-- dump date   	20140618_183357
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_001514433.1	cell death suppressor protein Lls1, putative
YP_001514438.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_001514445.1	PBS lyase HEAT-like repeat (COG1413) family protein
YP_001514451.1	named by homology to COG0702: Predicted nucleoside-diphosphate-sugar epimerases as well as a match to PF01370: NAD dependent epimerase/dehydratase family
YP_001514473.1	Good homology to a Ferric iron transporter.
YP_001514512.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_001514513.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_001514532.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001514533.1	catalyzes the transfer of electrons from NADH to quinones
YP_001514537.1	Putative multidrug resistance protein
YP_001514540.1	catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate
YP_001514541.1	Enables the enzymatic reduction of mercuric ions to elemental mercury
YP_001514549.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_001514553.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001514587.1	CAB/ELIP/HLIP superfamily protein
YP_001514684.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_001514778.1	Member of chain length determinant protein domain (on N terminal), PF02706, and COG3206, uncharacterized proteins involved in exopolysaccharide biosynthesis.
YP_001514785.1	catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate
YP_001514788.1	Member of bacterial type II secretion system protein F domain, PF00482.
YP_001514793.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_001514794.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_001514796.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_001514797.1	Streptomyces cyclase/dehydrase, putative
YP_001514801.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_001514810.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001514814.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001514815.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_001514820.1	Protein is a fusion of the Rieske protein from the cyt b6f complex (PetC) and a conserved hypothetical protein (COG3453).
YP_001514827.1	class III (anaerobic) ribonucleotide reductase: activating protein for anaerobic ribonucleotide triphosphate reductase (NrdG)
YP_001514835.1	oxidative; catalyzes the formation of divinylprotochlorophyllide from magnesium-protoporphyrin IX 13-monomethyl ester in isocyclic ring formation in chlorophyll biosynthesis
YP_001514837.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001514851.1	Disrupted reading frame. Sequence has been checked. Possible pseudogene.
YP_001514865.1	Upstream region overlaps with a putative transposase.
YP_001514866.1	Downstream region overlaps with a putative transposase-associated ATP-binding protein.
YP_001514874.1	Has a domain with similarity to IS4 family transposases.
YP_001514891.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls the expression of genes coding cell surface proteins involved in motility and growth on nitrogen
YP_001514899.1	magnesium protoporphyrin IX chelatase complex, subunit D
YP_001514904.1	Has a domain with similarity to IS4 family transposases.
YP_001514913.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_001514919.1	CobQ/CobB/MinD/ParA nucleotide binding domain (PF01656)
YP_001514926.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_001514946.1	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM
YP_001514950.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_001514952.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_001514959.1	Also member of sodium bile acid symporter family, PF01758.
YP_001514962.1	glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_001514965.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001514966.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_001514968.1	catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP
YP_001514972.1	bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate; note this protein has an additional C-terminal tail of unknown function as compared to similar bifunctional enzymes
YP_001514973.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_001514978.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_001514980.1	Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate
YP_001515000.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_001515005.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_001515012.1	5-formyluracil/5-hydroxymethyluracil DNA glycosylase; involved in base excision repair of DNA damaged by oxidation or by mutagenic agents; acts as DNA glycosylase that recognizes and removes damaged bases with a preference for oxidized pyrimidines; has apurinic/apyrimidinic lyase activity
YP_001515014.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_001515033.1	Member of COG0390, ABC-type uncharacterized transport system, permease component.
YP_001515054.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_001515065.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_001515102.1	main replicative polymerase
YP_001515128.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP
YP_001515140.1	catalyzes the phosphorylation of NAD to NADP
YP_001515160.1	Member of RmlD substrate binding domain PFAM, PF04321.
YP_001515161.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_001515164.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_001515165.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_001515172.1	Has a domain with similarity to IS4 family transposases.
YP_001515187.1	contains an N-terminal PF01590: GAF domain, central TIGR00229: PAS domain S-box and PF00989: PAS fold, with a C-terminal PF00512: His Kinase A (phosphoacceptor) domain and PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
YP_001515188.1	ATP:corrinoid adenosyltransferase BtuR/CobO/CobP family proteins
YP_001515198.1	Fe3+-transporting ATPase
YP_001515216.1	converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer
YP_001515232.1	catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite
YP_001515247.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_001515248.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_001515249.1	ATP synthase B' chain (Subunit II).
YP_001515250.1	ATP synthase F0, B subunit.
YP_001515251.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_001515252.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_001515253.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_001515254.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_001515258.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_001515261.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_001515270.1	This peptide has CheW like domain. PF01584: CheW-like domain
YP_001515276.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_001515281.1	Member of COG3670, lignostilbene-alpha,beta-dioxygenase and related enzymes.
YP_001515282.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_001515287.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_001515296.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001515319.1	catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate
YP_001515347.1	Contains both glycosyl transferase domain and tetratricopeptide repeat domain.
YP_001515348.1	acts as a promotor non-specific transcription repressor
YP_001515349.1	Decreases the phosphorylation of KaiC, a component of the main circadian regulator in cyanobacteria
YP_001515352.1	catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain
YP_001515364.1	Also known as riboflavin synthase beta subunit.
YP_001515391.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_001515412.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_001515416.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential
YP_001515421.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_001515431.1	FabF, beta-Ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.
YP_001515435.1	required for the assembly of photosystem I complex
YP_001515438.1	similar to light-independent protochlorophyllide reductase subunit B
YP_001515439.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, there are paralogous proteins that have been found to be nonessential but do function in secretion of a subset of exported proteins
YP_001515447.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_001515461.1	SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis
YP_001515463.1	catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate
YP_001515466.1	catalyzes the phosphorylation of NAD to NADP
YP_001515469.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_001515471.1	catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose
YP_001515482.1	Protein has cyt b559 domain at N terminus, with another unidentified domain fused to C terminal region.
YP_001515483.1	photosystem II reaction center subunit VI; associated with the reaction center of photosystem II
YP_001515488.1	Chlorophyll binding protein family with six transmembrane helices.
YP_001515492.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_001515494.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_001515501.1	Member of predicted metal-dependent membrane proteases, COG1266.
YP_001515508.1	Member of stage II sporulation protein E (SpoIIE) domain, PF07228.
YP_001515522.1	Limited homology to outer membrane proteins
YP_001515538.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_001515542.1	Converts chlorophyllide a into protochlorophyllide; light dependent
YP_001515575.1	with SufCD activates cysteine desulfurase SufS
YP_001515593.1	Contains possible FG-GAP domains
YP_001515597.1	a domain of this peptide contains ErfK/YbiS/YcfS/YnhG motif
YP_001515598.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_001515600.1	forms a direct contact with the tRNA during translation
YP_001515601.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_001515602.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_001515603.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_001515604.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_001515616.1	Contains Peptidyl-tRNA hydrolase domain
YP_001515617.1	identified by homology to PF01541: GIY-YIG catalytic domain
YP_001515623.1	Member of COG3670, lignostilbene-alpha,beta-dioxygenase and related enzymes.
YP_001515625.1	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate
YP_001515630.1	Chlorophyll binding protein family with six transmembrane helices.
YP_001515634.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001515652.1	CAB/ELIP/HLIP superfamily protein
YP_001515657.1	similar to YegS from E. coli
YP_001515693.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_001515703.1	Member of prepilin-type N-terminal cleavage/methylation domain, TIGR02532, and prokaryotic N-terminal methylation motif PFAM, PF07963.
YP_001515706.1	identified by match to protein family HMM PF01078; match to protein family HMM TIGR00368
YP_001515708.1	Putative oligopeptide transporter
YP_001515714.1	original name of this protein: chlorophyll d binding protein PcbC. Chlorophyll binding protein family with six transmembrane helices.
YP_001515715.1	Original name of this protein was chlorophyll-binding protein PcbA. Chlorophyll binding protein family with six transmembrane helices.
YP_001515716.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_001515717.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_001515733.1	Uroporphyrinogen-III synthase HemD
YP_001515734.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_001515744.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_001515749.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_001515783.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_001515785.1	Member of COG1073, hydrolases of the alpha/beta superfamily.
YP_001515786.1	light-independent reduction of protochlorophyllide to form chlorophyllide a
YP_001515787.1	light-independent; with chlN(bchN) and chlB(bchB) reduces ring D of protochlorophyllide to form chlorophyllide a in chlorophyll/bacteriochlorophyll production
YP_001515803.1	catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine
YP_001515830.1	CCB3 putative
YP_001515831.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_001515832.1	Amine oxidase and carotenoid isomerase (CrtH), putative
YP_001515853.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_001515864.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_001515870.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_001515878.1	light-independent reduction of protochlorophyllide to form chlorophyllide a
YP_001515879.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_001515885.1	contains caspase domain
YP_001515888.1	class III (anaerobic) ribonucleotide reductase: activating protein for anaerobic ribonucleotide triphosphate reductase (NrdG)
YP_001515898.1	Gene named and identified based upon findings in Kuras, Richard, Denis Saint-Marcous, Francis-Andre Wollman and Catherine de Vitry. ''A specific c-type cytochrome maturation system is required for oxygenic photosynthesis.'' PNAS 104(2007): 9906-991
YP_001515911.1	catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
YP_001515931.1	CAB/ELIP/HLIP superfamily, putative.
YP_001515932.1	CAB/ELIP/HLIP superfamily protein
YP_001515940.1	Shows some similarity to DevC
YP_001515959.1	identified by match to protein family HMM PF00296
YP_001515965.1	Member of Oxidoreductase molybdopterin binding domain, PF00174.
YP_001515967.1	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate
YP_001515971.1	catalyzes the formation of pyruvate from D-cysteine
YP_001515973.1	catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis
YP_001515978.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_001515979.1	Member of COG1805, Na+transporting NADH:ubiquinone oxidoreductase, subunit NqrB.
YP_001515980.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001515993.1	catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis
YP_001515995.1	part of the core of the reaction center of photosystem I
YP_001516010.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_001516012.1	unknown function; YciI from Haemophilus influenzae has a crystal structure similar to a muconolactone isomerase, but does not seem to catalyze any of the reactions predicted from the sequence or structure similarity
YP_001516033.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_001516036.1	similar to  MiaB-like tRNA modifying enzyme YliG.
YP_001516039.1	catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole
YP_001516040.1	Shows strong similarity to ribonuclease G (rng) EC#: 3.1.4-
YP_001516049.1	Possible phosphate ABC transporter
YP_001516063.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_001516066.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_001516082.1	Putative Ycf49-like protein
YP_001516084.1	Contains the glycosyltransferase family 28 N-terminal domain, PF03033.
YP_001516087.1	catalyzes the phosphorylation of 4-diphosphocytidyl-2-C-methyl-D-erythritol in the nonmevalonate pathway of isoprenoid biosynthesis
YP_001516088.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_001516120.1	type III RuBisCO; involved in carbon fixation
YP_001516128.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_001516129.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001516130.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001516131.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_001516132.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_001516134.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_001516135.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_001516141.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_001516173.1	catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis
YP_001516176.1	catalyzes the formation of precorrin-3 from precorrin-2
YP_001516177.1	Shows similarity to an amine-related ABC transporter.
YP_001516181.1	Similar to UPF 0082 protein
YP_001516194.1	Similar to UPF0161 protein
YP_001516197.1	putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_001516199.1	catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis
YP_001516201.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_001516206.1	Putative membrane protein
YP_001516213.1	contains DUF897 domain
YP_001516214.1	catalyzes the interconversion of tetrahydrodipicolinate and L,L-diaminopimelate in lysine biosynthesis
YP_001516217.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_001516224.1	Similar to Beta-xylosidase
YP_001516242.1	Member of chain length determinant protein domain on the N terminal, PF02706, and COG0489, ATPases involved in chromosome partitioning.
YP_001516260.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_001516261.1	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate
YP_001516269.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_001516274.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_001516284.1	TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs
YP_001516288.1	catalyzes the formation of thiamine monophosphate from 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate
YP_001516290.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_001516314.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_001516339.1	cobalamin (vitamin B12) biosynthesis CbiX protein
YP_001516340.1	Member of the glycosyltransferase family 28 N-terminal domain PFAM, PF03033.
YP_001516343.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_001516346.1	catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway
YP_001516349.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001516351.1	catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose
YP_001516357.1	transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis
YP_001516362.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_001516372.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_001516373.1	transfers electrons from NAD(P)H to quinons in the respiratory chain
YP_001516378.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_001516381.1	cytochrome b6-f complex subunit 5; plastohydroquinone/plastocyanin oxidoreductase; with PetL, PetM and PetN makes up the small subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I
YP_001516390.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_001516397.1	similar to adenylate kinase
YP_001516398.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001516406.1	Similar to NAD-dependent epimerase/dehydratase
YP_001516407.1	contains transmembrane domain
YP_001516420.1	catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate
YP_001516432.1	amylomaltase; acts to release glucose from maltodextrins
YP_001516437.1	Gene named and identified based upon findings in Kuras, Richard, Denis Saint-Marcous, Francis-Andre Wollman and Catherine de Vitry. ''A specific c-type cytochrome maturation system is required for oxygenic photosynthesis.'' PNAS 104(2007): 9906-991
YP_001516438.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; the proteins in this cluster is involved expression of genes important stationary phase, nitrogen promoter recognition, and light/dark adaption
YP_001516447.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_001516450.1	Gene named and identified based upon findings in Kuras, Richard, Denis Saint-Marcous, Francis-Andre Wollman and Catherine de Vitry. ''A specific c-type cytochrome maturation system is required for oxygenic photosynthesis.'' PNAS 104(2007): 9906-9910.
YP_001516451.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_001516452.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_001516478.1	functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA
YP_001516479.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_001516482.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate
YP_001516485.1	catalyzes the formation of citrate from acetyl-CoA and oxaloacetate
YP_001516486.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001516487.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001516488.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001516489.1	Catalyzes the transfer of electrons from NADH to quinone
YP_001516491.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_001516500.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_001516510.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_001516521.1	CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS
YP_001516522.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_001516538.1	Has a domain with similarity to IS4 family transposases.
YP_001516550.1	similar toVWA domain containing CoxE-like protein
YP_001516558.1	Possible selenophosphate synthase
YP_001516574.1	similar to Anti-sigma factor
YP_001516583.1	contains possible cupin domain
YP_001516591.1	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_001516607.1	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate
YP_001516608.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_001516617.1	converts 1,4-alpha-D-glucans to maltodextrin
YP_001516619.1	oxidative; catalyzes the formation of divinylprotochlorophyllide from magnesium-protoporphyrin IX 13-monomethyl ester in isocyclic ring formation in chlorophyll biosynthesis
YP_001516620.1	catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine
YP_001516638.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_001516639.1	Shows similarity to PmgA protein
YP_001516644.1	PBS lyase HEAT-like repeat (COG1413) protein region
YP_001516645.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_001516646.1	Member of COG5401, Spore germination proteins.
YP_001516654.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_001516655.1	ClpR variant present in an operon with ClpP3 in Synechococcus PCC7942; ClpR is missing the catalytic triad Ser-His-Asp characteristic of serine-type proteases; the exact function of ClpR and ClpP3 is unknown however they appear to be necessary for cell viability; hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_001516658.1	Member of 7TM chemoreceptor PFAM, PF01461.
YP_001516664.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; the sigma factors in this cluster are not required for growth or development, however may be involved in expression of nitrogen fixation genes
YP_001516673.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_001516682.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_001516710.1	FAD dependent oxidoreductase family
YP_001516718.1	This gene contains InterPro domain NmrA-like protein, also contains DVR Locus (The plant cell, vol.17, 233-240. January 2005).
YP_001516737.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_001516744.1	4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction
YP_001516762.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_001516766.1	catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine
YP_001516779.1	with PsaB binds the primary electron donor of photosystem I, P700, and subsequent electron acceptors as part of photosystem I
YP_001516780.1	with PsaA binds the primary electron donor of photosystem I, P700, and subsequent electron acceptors as part of photosystem I
YP_001516809.1	similar to CP12 domain
YP_001516818.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_001516819.1	Shuttles electrons from NAD(P)H, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain
YP_001516824.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_001516825.1	Stabilizes the interaction between PsaC and the photosystem I core
YP_001516826.1	interacts with the circadian clock regulator KaiC to maintain circadian rhythms
YP_001516834.1	main replicative polymerase; these cyanobacterial enzymes contain C-terminal split inteins; they are joined with the C-terminal fragments that contain N-terminal inteins that are encoded elsewhere in the genome
YP_001516880.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis
YP_001516884.1	synthesizes RNA primers at the replication forks
YP_001516913.1	similar to transposase
YP_001516921.1	Shows homology to transcriptional modulator of MazE/toxin, MazF
YP_001516933.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_001516934.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_001516935.1	essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc)
YP_001516941.1	catalyzes the formation of pantothenate from pantoate and beta-alanine and the formation of cytidine diphosphate from cytidine monophosphate
YP_001516942.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001516943.1	oxidoreductase family protein, FAD-binding
YP_001516948.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_001516950.1	may be involved in assembling and maintaining PSII complexes in the thylakoid membrane
YP_001516951.1	may have a role in PSII core assembly, maintaining PSII dimers and donor side electron transfer
YP_001516952.1	photosystem II reaction center subunit VI; associated with the reaction center of photosystem II
YP_001516953.1	similar to Arabidopsis thaliana photosystem II assembly protein
YP_001516956.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_001516958.1	catalyzes the formation of precorrin-8x from precorrin-6y
YP_001516967.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001516973.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_001516978.1	TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine
YP_001517011.1	required for 70S ribosome assembly
YP_001517024.1	similarity to acyl carrier protein
YP_001517041.1	similar to GUN4
YP_001517064.1	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA
YP_001517074.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_001517100.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_001517153.1	Putative nitrate transporter
YP_001517154.1	Putative nitrate transporter
YP_001517156.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_001517160.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; this condensing enzyme differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_001517166.1	cell death suppressor protein
YP_001517170.1	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_001517173.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_001517175.1	CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6
YP_001517177.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_001517178.1	contains similarity to preprotein translocase domain, SecE subunit
YP_001517179.1	Modulates Rho-dependent transcription termination
YP_001517181.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_001517190.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_001517191.1	catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate
YP_001517192.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_001517196.1	responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid
YP_001517198.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_001517217.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_001517220.1	cell death suppressor protein Lls1,putative
YP_001517228.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_001517230.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_001517245.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_001517248.1	Possible thioredoxin reductase, vitamin k epoxide reductase protein.
YP_001517250.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_001517255.1	catalyzes the formation of tyrosine from arogenate
YP_001517258.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_001517280.1	similar to ABC-type transporter
YP_001517284.1	a domain of this peptide contains Rhomboid family domain
YP_001517295.1	PBS lyase HEAT-like repeat protein, CpcE-like protein
YP_001517296.1	ferredoxin-dependent assimilatory nitrite reductase
YP_001517301.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_001517310.1	Contains GTP-binding domain
YP_001517314.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_001517316.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_001517332.1	Member of the transcriptional regulator, ArsR family.
YP_001517339.1	probable signal peptide protein
YP_001517352.1	Homology to transporter 43, a probable ferrous iron transport protein
YP_001517365.1	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers
YP_001517367.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_001517368.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_001517383.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_001517397.1	catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit
YP_001517399.1	This protein also named'ribosome-associated inhibitor A', is a light stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site.
YP_001517400.1	lipoyl-[acyl-carrier protein]-protein-N-lipoyltransferse; lipoate-protein ligase B; transfers lipoate to apolipoproteins; involved in lipoate metabolism
YP_001517404.1	functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria
YP_001517407.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_001517408.1	binds the polymerase to DNA and acts as a sliding clamp
YP_001517414.1	Member of COG3670, lignostilbene-alpha,beta-dioxygenase and related enzymes.
YP_001517418.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_001517425.1	negatively supercoils closed circular double-stranded DNA
YP_001517436.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_001517455.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_001517464.1	Has high similarity to NADPH oxidase from humans
YP_001517466.1	NADH-dependent; catalyzes a key regulatory step in fatty acid biosynthesis
YP_001517469.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_001517471.1	Putative Ferric iron transporter
YP_001517473.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_001517475.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_001517476.1	contains DUF 901
YP_001517504.1	Member of COG0697, permeases of the drug/metabolite transporter (DMT) superfamily.
YP_001517505.1	CAB/ELIP/HLIP superfamily protein
YP_001517506.1	a domain of this peptide also matches family PF00722: Glycosyl hydrolases family 16
YP_001517510.1	subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_001517511.1	subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone
YP_001517515.1	similar to subunit B of multicomponent Na+/H+ antiporter
YP_001517516.1	subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_001517526.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth
YP_001517541.1	CAB/ELIP/HLIP superfamily protein
YP_001517544.1	CAB/ELIP/HLIP superfamily, putative.
YP_001517545.1	similar to light inducible protein. CAB/ELIP/HLIP superfamily protein
YP_001517576.1	identified by homology with TIGR01444: methyltransferase, FkbM family
YP_001517596.1	Possible aromatic ring-cleaving dioxygenase-like protein
YP_001517615.1	Creatinine amidohydrolase, or creatininase, catalyses the hydrolysis of creatinine to creatine
YP_001517625.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001517636.1	Cobalamin biosynthesis protein CobD/CbiB
YP_001517643.1	shuttles electrons from NAD(P)H, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradien
YP_001517654.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_001517657.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_001517668.1	TonB-dependent receptor, putative
YP_001517672.1	Chlorophyll binding protein family with six transmembrane helices.
YP_001517674.1	Chlorophyll binding protein family with six transmembrane helices.
YP_001517675.1	Chlorophyll binding protein family with six transmembrane helices.
YP_001517686.1	similar to transposase
YP_001517697.1	a domain of this peptide contains FAD binding domain
YP_001517739.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_001517746.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_001517750.1	similar to heavy metal associated domain protein
YP_001517756.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_001517757.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_001517760.1	binds and unfolds substrates as part of the ClpXP protease
YP_001517762.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_001517765.1	MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange
YP_001517807.1	Matches COG4323, predicted membrane proteins.
YP_001517819.1	putative DedA family protein
YP_001517837.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001517848.1	Has a domain with similarity to IS4 family transposases.
YP_001517850.1	Similar to SpoIID/LytB domain protein
YP_001517856.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_001517883.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001517886.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_001517888.1	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides
YP_001517896.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_001517898.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_001517899.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001517900.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_001517905.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_001517906.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response
YP_001517908.1	UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin
YP_001517937.1	involved in the peptidyltransferase reaction during translation
YP_001517939.1	a domain of this peptide also matches domain of unknown function DUF143
YP_001517952.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_001517958.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_001517960.1	Chlorophyll binding protein family with six transmembrane helices.
YP_001517961.1	original name: PcbC. Chlorophyll binding protein family with six transmembrane helices.
YP_001517969.1	required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA
YP_001517970.1	catalyzes the interconversion of precorrin-8X and hydrogenobyrinate
YP_001517971.1	precorrin-6y C5,15-methyltransferase (decarboxylating)containing conserved CbiE and CbiT domains.
YP_001517973.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_001517974.1	CAB/ELIP/HLIP superfamily protein
YP_001517980.1	catalyzes the formation of Mg-protoporphyrin IX methyl ester and S-adenosyl-L-homocysteine from Mg-protoporphyrin IX and S-adenosyl-L-methionine
YP_001517987.1	catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense
YP_001517998.1	carotene 7,8-desaturase; zeta-carotene desaturase CtrQ
YP_001518030.1	Shows some homology to Glutamine/ Methionine transporters.
YP_001518040.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_001518060.1	catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate
YP_001518075.1	similarity to photosystem II protein PsbY
YP_001518080.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_001518082.1	similar to Colicin immunity protein
YP_001518090.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_001518093.1	Also member of stage II sporulation protein E (SpoIIE) domain, PF07228.
YP_001518100.1	peptidase M1 and conserved PBS lyase HEAT-like repeat protein
YP_001518111.1	Transmembrane protein 14C
YP_001518128.1	Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone
YP_001518133.1	similar to nitroreductase
YP_001518147.1	stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein
YP_001518153.1	may be involved in binding plastoquinone and maintaining PSII dimers
YP_001518182.1	hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide
YP_001518184.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits
YP_001518188.1	low-potential cytochrome c; with PsbO, PsbP, PsbQ, and PsbU makes up the oxygen-evolving complex of photosystem II
YP_001518199.1	Member of ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II), COG4360.
YP_001518200.1	contains transmembrane domain similarity. CAB/ELIP/HLIP superfamily protein
YP_001518209.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme
YP_001518211.1	Shows homology with haemagglutination activity domain protein
YP_001518216.1	similar to 2Fe-2S iron-sulfur cluster binding domain
YP_001518219.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_001518227.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; the sigma factors in this cluster are not essential for growth or development; however they may be involved in the expression of nitrogen fixation genes and in dark/light adaption
YP_001518236.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_001518242.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_001518246.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_001518249.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_001518267.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_001518285.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_001518286.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_001518292.1	May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
YP_001518293.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_001518298.1	catalyzes the formation of N-succinyl-2-L-amino-6-oxoheptanedioate and L-glutamate from N-succinyl-L-2,6-diaminoheptanedioate and 2-oxoglutarate
YP_001518303.1	catalyzes the formation of citrate from acetyl-CoA and oxaloacetate
YP_001518329.1	similar to organic solvent tolerant proteins
YP_001518333.1	Oxygenase that introduces the hydroxyl group at carbon four of 2-octaprenyl-6-methoxyphenol resulting in the formation of 2-octaprenyl-6-methoxy-1,4-benzoquinone
YP_001518366.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_001518367.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_001518396.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_001518404.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_001518405.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_001518406.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_001518423.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_001518442.1	Member of COG0697, permeases of the drug/metabolite transporter (DMT) superfamily.
YP_001518456.1	Small subunit of nitrite reductase (NirD) family and Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain
YP_001518464.1	Shows similarity to C-terminus of transposases in addition to similarity to full length transposases.
YP_001518472.1	member of antibiotic biosynthesis monooxygenase domain protein HMM
YP_001518486.1	zeta-carotene desaturase-like (CrtQ) and amine oxidase putative
YP_001518490.1	similar transposase and inactivated derivatives
YP_001518513.1	This protein is also predicted exoribonuclease II activity.
YP_001518529.1	similar to transposase and inactivated derivatives
YP_001518531.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_001518536.1	Member of cell division protein FtsA PFAM, PF02491.
YP_001518544.1	Homology starts at about AA 100, however ORF starts earlier.
YP_001518568.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_001518589.1	a domain of this peptide also matches yrdC domain
YP_001518602.1	PFAM: contains Penicillin binding protein transpeptidase domain
YP_001518610.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_001518625.1	protoporphyrinogen oxidase, HemK family protein
YP_001518643.1	forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm
YP_001518648.1	NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis
YP_001518657.1	E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_001518662.1	catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1
YP_001518663.1	type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_001518664.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_001518670.1	catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate
YP_001518681.1	MobA; links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide; involved in molybdenum cofactor biosynthesis
YP_001518682.1	Member of COG0547, Anthranilate phosphoribosyltransferases.
YP_001518705.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_001518707.1	regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity
YP_001518709.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_001518715.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_001518719.1	similar to mttA/Hcf106 family protein
YP_001518720.1	Gene is sometimes called psbZ.
YP_001518721.1	Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A
YP_001518722.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_001518725.1	with CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism
YP_001518738.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001518743.1	cytochrome f, with cytochrome b6, subunit IV, and the Rieske protein, makes up the large subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I
YP_001518744.1	Rieske protein, with cytochrome b6, cytochrome f, and subunit IV, makes up the large subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I
YP_001518756.1	threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway
YP_001518758.1	containing V4R domain protein
YP_001518760.1	putative phycobilisome protein
YP_001518773.1	involved in light-induced Na+-dependent proton extrusion
YP_001518793.1	negatively supercoils closed circular double-stranded DNA
YP_001518799.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_001518805.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_001518807.1	Also member of type IV pilus assembly protein PilZ PFAM, PF07238.
YP_001518831.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_001518832.1	cytochrome b6-f complex subunit 8; with PetL, PetG and PetM makes up the small subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I
YP_001518835.1	phytyltransferase acting specifically in the tocopherol biosynthetic pathway; member of the UbiA prenyltransferase family which catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin
YP_001518847.1	catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate)
YP_001518848.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_001518852.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_001518856.1	ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms
YP_001518860.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_001518861.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_001518866.1	similar to transposase and inactivated derivatives
YP_001518875.1	CAB/ELIP/HLIP superfamily, putative
YP_001518876.1	CAB/ELIP/HLIP superfamily protein
YP_001518877.1	contains transmembrane domain. CAB/ELIP/HLIP superfamily protein
YP_001518910.1	catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide
YP_001518925.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_001518926.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_001518929.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_001518938.1	blocks the formation of polar Z-ring septums
YP_001518945.1	putative fusion protein of Uroporphyrinogen-III methylase (CobA) and Uroporphyrinogen-III synthase (HemD)
YP_001518947.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_001518952.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_001518955.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_001518957.1	PetD, with cytochrome b6, cytochrome F, and the Rieske protein, makes up the large subunit of the cytochrome b6-f complex; cytochrome b6-f mediates electron transfer between photosystem II and photosystem I
YP_001518958.1	electron transport protein
YP_001518968.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_001518977.1	Member of 7TM chemoreceptor PFAM, PF01461.
YP_001518978.1	Containing conserved hypothetic CbiG and CobJ domain proteins
YP_001518981.1	catalyzes the formation of adenosylcob(III)yrinic acid a,c-diamide from cob(I)yrinic acid a,c-diamide
YP_001518986.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_001518987.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_001518988.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_001518989.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_001518990.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_001518991.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_001518992.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_001518993.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_001518996.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_001518998.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_001518999.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_001519002.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_001519004.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_001519005.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_001519006.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_001519043.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_001519047.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls the expression of genes coding cell surface proteins involved in motility and growth on nitrogen
YP_001519048.1	Member of COG0670, Integral membrane proteins, interacts with FtsH.
YP_001519051.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_001519058.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_001519092.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_001519094.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_001519101.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_001519102.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif
YP_001519115.1	CrtP is correspond to PDS in higher plants
YP_001519125.1	Member of the DegT/DnrJ/EryC1/StrS aminotransferase superfamily.
YP_001519141.1	magnesium protoporphyrin IX chelatase complex, subunit H.
YP_001519145.1	bifunctional protein includes: Methylenetetrahydrofolatedehydrogenase; Methenyltetrahydrofolate cyclohydrolase
YP_001519149.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate
YP_001519152.1	Member of ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain, PF02518, and COG1215, Glycosyltransferases.
YP_001519157.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_001519163.1	Has a domain with similarity to IS4 family transposases.
YP_001519178.1	catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate
YP_001519180.1	Psb29; involved in biogenesis of the photosystem II; in Arabidopsis it interacts with the heterotrimeric G-protein (GPA1) and seems to be involved in a D-glucose signaling mechanism between plastid and the plasma membranes
YP_001519185.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate
YP_001519188.1	NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_001519196.1	magnesium protoporphyrin IX chelatase complex, subunit I. ATP binding site.
YP_001519202.1	Catalyzes a reaction in which the CO2 acceptor molecule, RuBP, is generated via the phosphorylation of ribulose 5-phosphate with ATP
YP_001519205.1	contains transmembrane domain. CAB/ELIP/HLIP superfamily protein
YP_001519213.1	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis
YP_001519239.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_001519242.1	Similar to adhesin
YP_001519260.1	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers
YP_001519264.1	Ferredoxin, putative
YP_001519269.1	Similar to haemagglutination protein family
YP_001519270.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor controls the expression of genes coding cell surface proteins involved in motility and growth on nitrogen
YP_001519291.1	similar to CsbD family proteins
YP_001519292.1	Shows similarity to H-repeat associated proteins in E. coli
YP_001519294.1	CAB/ELIP/HLIP superfamily protein
YP_001519315.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_001519358.1	similar to NAD dependent epimerase/dehydratase
YP_001519374.1	CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis
YP_001519376.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_001519392.1	ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits
YP_001519405.1	catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate
YP_001519410.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_001519413.1	Possible polyamine transporter
YP_001519445.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_001519446.1	catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide
YP_001519466.1	isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway
YP_001519467.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_001519470.1	functions in MreBCD complex in some organisms
YP_001519474.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_001519506.1	catalyzes branch migration in Holliday junction intermediates
YP_001519536.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_001519537.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_001519539.1	catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA
YP_001519544.1	Member of COG0697, permeases of the drug/metabolite transporter (DMT) superfamily.
YP_001519588.1	catalyzes the reduction of biliverdin IX-alpha producing (3Z)-phycocyanobilin and oxidized ferredoxin
YP_001519597.1	Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases, containing conserved Rieske (2Fe-2S) region
YP_001519603.1	Putative transcriptional modulator
YP_001519604.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_001519605.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_001519607.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_001519638.1	This is a divergent form of trpE. It is not obvious if it is active in Trp biosynthesis. Component I catalyzes the formation of anthranilate using ammonia rather than glutamine, whereas component II provides glutamine amidotransferase activity
YP_001519654.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_001519661.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_001519667.1	similar to YegS from E. coli
YP_001519688.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_001519694.1	similar to ATP-utilizing enzymes of the PP-loop superfamily
YP_001519697.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; involved in carboxysome formation
YP_001519700.1	FAD-binding oxidoreductase family protein
YP_001519733.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_001519757.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_001519785.1	may be involved in regulating PSII assembly and/or stability
YP_001519786.1	TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_001519794.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_001519795.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_001519799.1	also has strong similarity to succinate dehydrogenase subunit C
YP_001519802.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_001519816.1	member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions
YP_001519825.1	PsbW; part of the phosystem II reaction center
YP_001519829.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_001519832.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_001519837.1	catalyzes the formation of Mg-protoporphyrin IX from protoporphyrin IX and Mg(2+); first committed step of chlorophyll biosynthesis
YP_001519849.1	catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione
YP_001519865.1	This protein performs the mismatch recognition step during the DNA repair process
YP_001519879.1	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA
YP_001519889.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_001519901.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_001519902.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_001519913.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_001519928.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_001519958.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_001519968.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_001519972.1	Shows homology to Tellurite resistance protein TehB
YP_001520001.1	DNA gyrase is also known as DNA topoisomerase IV
YP_001520004.1	catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP
YP_001520022.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_001520023.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_001520043.1	involved in de novo purine biosynthesis
YP_001520054.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_001520059.1	Member of COG0697, permeases of the drug/metabolite transporter (DMT) superfamily.
YP_001520065.1	Radical SAM domain protein and putative CobW/P47K family protein
YP_001520076.1	containing V4R domain protein.
YP_001520080.1	Has a domain with similarity to IS4 family transposases.
YP_001520138.1	a domain of this peptide also matches uncharacterized ACR, YdiU/UPF0061 family
YP_001520163.1	putative histidinol-phosphate aminotransferase and L-threonine-O-3-phosphate decarboxylase
YP_001520185.1	molecular chaperone
YP_001520195.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_001520211.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_001520214.1	catalyzes the conversion of N-acetyl_L-aspartic acid (NAA) to aspartate and acetate
YP_001520224.1	Shows homology to haemagglutination family proteins
YP_001520229.1	Has an ammonium transporter domain.
YP_001520231.1	Member of stage II sporulation protein E (SpoIIE) domain, PF07228.
YP_001520243.1	Possible urea/ amine transporter
YP_001520244.1	aliphatic amidase; catalyzes the hydrolysis of short-chain aliphatic amides to their organic acids and can also transfer the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates
YP_001520254.1	iron stress-induced chlorophyll-binding protein IsiA. Chlorophyll binding protein family with six transmembrane helices.
YP_001520255.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_001520262.1	maintains the balance of metabolites in the pentose-phosphate pathway
YP_001520283.1	Shows homology to arsenate-activated ATPase
YP_001520303.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_001520328.1	Has a domain with similarity to IS4 family transposases.
YP_001520333.1	identified by homology to PF00107: oxidoreductase, zinc-binding dehydrogenase family
YP_001520351.1	identified by homology to PF00107: oxidoreductase, zinc-binding dehydrogenase family
YP_001520360.1	similar to integral membrane protein
YP_001520402.1	Upstream region overlaps with a putative transposase.
YP_001520403.1	Downstream region overlaps with a putative transposase-associated ATP-binding protein.
YP_001520423.1	Has a domain with similarity to IS4 family transposases.
YP_001520455.1	Possible taurine dehydrogenase, small subunit
YP_001520485.1	identified by homology to PF00107: oxidoreductase, zinc-binding dehydrogenase family
YP_001520488.1	Downstream region overlaps with a putative transposase-associated ATP-binding protein.
YP_001520489.1	Upstream region overlaps with a putative transposase.
YP_001520567.1	catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; catalyzes isomerization of glucose 6-phosphate and fructose 6-phosphate
YP_001520568.1	similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate
YP_001520569.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_001520594.1	Member of COG0697, permeases of the drug/metabolite transporter (DMT) superfamily.
YP_001520600.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_001520616.1	similar to transcriptional regulator
YP_001520622.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_001520664.1	Member of COG1077, Actin-like ATPases involved in cell morphogenesis.
YP_001520668.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_001520673.1	Upstream region overlaps with a putative transposase.
YP_001520674.1	Downstream region overlaps with a putative transposase-associated ATP-binding protein.
YP_001520726.1	Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
YP_001520751.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_001520757.1	Homologous to biopolymer transport protein ExbD/TolR
YP_001520758.1	Limited homology to membrane transport protein ExbD/TolR
YP_001520801.1	2 frame shifts/ deletions
YP_001520810.1	Member of COG0390, ABC-type uncharacterized transport system, permease components.
YP_001520846.1	Ferrichrome ABC transporter, disrupted by frame shift and transposon elements.
YP_001520847.1	May be a member of OrfB IS3 family.
YP_001520850.1	May be a member of OrfA IS3 family.
YP_001520886.1	catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde
YP_001520893.1	aminotransferase, class III superfamily protein
YP_001520899.1	Putative Anthranilate synthase protein
YP_001520909.1	Upstream region overlaps with a putative transposase.
YP_001520910.1	Downstream region overlaps with a putative transposase-associated ATP-binding protein.
YP_001520964.1	containing CobQ/CobB/MinD/ParA nucleotide binding domain (PF01656)
YP_001521013.1	Putative outer membrane protein
YP_001521036.1	Shows homology to DNA helicase but no HMM support
YP_001521043.1	Upstream region overlaps with a putative transposase.
YP_001521044.1	Downstream region overlaps with a putative transposase-associated ATP-binding protein.
YP_001521051.1	Downstream region overlaps with a putative transposase-associated ATP-binding protein.
YP_001521052.1	Upstream region overlaps with a putative transposase.
YP_001521067.1	CobQ/CobB/MinD/ParA nucleotide binding domain (PF01656 and COG1192)
YP_001521151.1	putative cobalamin biosynthesis protein CobW/P47K family protein (Cyanobacteria).
YP_001521158.1	formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate
YP_001521185.1	putative cobalamin biosynthesis protein CobW/P47K family protein (Proteobacteria)
YP_001521202.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_001521209.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_001521215.1	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides
YP_001521298.1	contains DUF323 domain
YP_001521304.1	Shows homology to DNA helicase but no HMM support
YP_001521346.1	contains a tandem repeat of the PF07411:  Domain of unknown function (DUF1508)
YP_001521397.1	contains DUF323 domain
YP_001521410.1	Upstream region overlaps with a putative transposase.
YP_001521411.1	Downstream region overlaps with a putative transposase-associated ATP-binding protein.
YP_001521443.1	Member of transglycosylase, PF00912.
YP_001521446.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_001521515.1	Upstream region overlaps with a putative transposase.
YP_001521516.1	Downstream region overlaps with a putative transposase-associated ATP-binding protein.
YP_001521527.1	Downstream region overlaps with a putative transposase-associated ATP-binding protein.
YP_001521528.1	Upstream region overlaps with a putative transposase.
YP_001521540.1	fusion of cpcD/cpcH domain protein.
YP_001521541.1	Phycobilisome linker polypeptide, phycocyanin-associated, CpcC/CpcI
YP_001521552.1	Iron-stress induced chlorophyll binding protein belongs to the superfamily protein of chlorophyll-binding proteins with six transmembrane helices.
YP_001521554.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_001521564.1	Phycocyanobilin lyase subunit alpha, CpcE
YP_001521592.1	Highly conserved
YP_001521625.1	catalyzes the reduction of biliverdin IX-alpha producing (3Z)-phycocyanobilin and oxidized ferredoxin
YP_001521641.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_001521642.1	Heme oxygenase (decyclizing)
YP_001521651.1	Phycobilisome linker polypeptide, phycocyanin-associated, CpcC/CpcI
YP_001521652.1	fusion of cpcD/cpcH domain protein.
YP_001521712.1	contains DUF500 domain
YP_001521718.1	A conserved hypothetical protein (COG1192)
YP_001521761.1	not a good match to PF03551: transcriptional regulator, PadR family as does the characterized Pex circadian period extender protein
YP_001521772.1	a domain of this polypeptide containing uncharacterized protein conserved in bacteria (DinB)
YP_001521806.1	Shows homology to DNA helicase but no HMM support
YP_001521865.1	Upstream region overlaps with a putative transposase.
YP_001521867.1	Shows homology to DNA helicase but no HMM support
YP_001521912.1	Shows similarity to Phage derived protein Gp49-like (DUF891)
YP_001521946.1	Highly similar to transposases however too short to be an active transposase.
YP_001521950.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_001521952.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_001521965.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001521966.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_001521967.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_001521968.1	H(+)-transporting ATP synthase, gene 1
YP_001521971.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_001521972.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0
YP_001521973.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_001521974.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_001521991.1	with HoxF and HoxE catalyzes H2-dependent NAD(P)+-reduction as well as NAD(P)H-dependent H2-evolution
YP_001522032.1	similar to insertion element IS1
YP_001522035.1	Downstream region overlaps with a putative transposase-associated ATP-binding protein.
YP_001522036.1	Upstream region overlaps with a putative transposase.
YP_001522050.1	catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol)
YP_001522076.1	CAB/ELIP/HLIP superfamily, putative.
YP_001522081.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_001522097.1	a conserved protein domain (COG1192)
YP_001522131.1	Similar to Bacteriophage N15 gp49 gene 49
YP_001522161.1	Downstream region overlaps with a putative transposase-associated ATP-binding protein.
YP_001522162.1	Upstream region overlaps with a putative transposase.
YP_001522169.1	identified by homology with TIGR01444: methyltransferase, FkbM family
YP_001522172.1	ankyrin repeat-containing protein
YP_001522174.1	CobQ/CobB/MinD/ParA nucleotide binding domain (PF01656 and COG1192)
YP_001522207.1	catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs
YP_001522212.1	contains a tandem repeat of the PF07411:  Domain of unknown function (DUF1508)
YP_001522258.1	Upstream region overlaps with a putative transposase.
YP_001522259.1	Downstream region overlaps with a putative transposase-associated ATP-binding protein.
YP_001522273.1	Shows homology to DNA helicase but no HMM support
YP_001522342.1	CobQ/CobB/MinD/ParA nucleotide binding domain (PF01656)
YP_001522348.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_001522353.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_001522354.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_001522360.1	Homologous to AMP-dependent synthetase and ligase
YP_001522363.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_001522381.1	Shows limited homology to ferrous ion transporter
YP_001522389.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_001522455.1	Downstream region overlaps with a putative transposase-associated ATP-binding protein.
YP_001522456.1	Upstream region overlaps with a putative transposase.
YP_001522461.1	Shows homology to DNA helicase but no HMM support
YP_001522517.1	contains DUF323 domain
YP_001522522.1	A conserved hypothetical protein (COG1192)
YP_001522535.1	Has similarity to a domain of adenylate/guanylate cyclase.
YP_001522591.1	Shows homology to DNA helicase but no HMM support
YP_001522592.1	may contain protein kinase domain
YP_001522612.1	Downstream region overlaps with a putative transposase-associated ATP-binding protein.
YP_001522613.1	Upstream region overlaps with a putative transposase.
YP_001522654.1	Member of Ion channel PFAM, PF07885.
YP_001522667.1	similar to Na-Ca exchanger/integrin-beta4 [Trichodesmium erythraeum IMS101] and Integrins alpha chain [Anabaena variabilis ATCC 29413]
YP_001522668.1	Downstream region overlaps with a putative transposase-associated ATP-binding protein.
YP_001522669.1	Upstream region overlaps with a putative transposase.
YP_001522671.1	Shows homology to DNA helicase but no HMM support
YP_001522734.1	CobQ/CobB/MinD/ParA nucleotide binding domain (PF01656 and COG1192)
YP_001522736.1	CobQ/CobB/MinD/ParA nucleotide binding domain protein, putative
YP_001522739.1	Upstream region overlaps with a putative transposase.