-- dump date 20140618_184116 -- class Genbank::CDS -- table cds_note -- id note YP_001620022.1 horisontally transferred from any Enterobacterium YP_001620027.1 this protein contains five predicted transmembrane helices YP_001620030.1 this protein contains one predicted N-terminal transmembrane helix YP_001620035.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_001620043.1 this protein contains three predicted transmembrane helices YP_001620044.1 this protein contains three predicted N-terminal transmembrane helices YP_001620045.1 this protein contains two predicted transmembrane domains YP_001620055.1 this protein contains six predicted transmembrane helices YP_001620056.1 this protein contains six predicted transmembrane helices YP_001620059.1 this protein contains one predicted N-terminal transmembrane helix YP_001620060.1 this protein contains one predicted N-terminal transmembrane helix YP_001620067.1 this protein contains 11 predicted transmembrane helices YP_001620068.1 this protein contains one predicted N-terminal transmembrane helix YP_001620069.1 this protein contains one predicted N-terminal transmembrane helix YP_001620070.1 this protein contains six predicted transmembrane helices YP_001620071.1 this protein contains six predicted transmembrane helices YP_001620072.1 this protein contains one predicted N-terminal transmembrane helix YP_001620073.1 this protein contains one predicted N-terminal transmembrane helix YP_001620074.1 this protein contains five predicted transmembrane helices YP_001620078.1 this protein contains two predicted transmembrane helices in the central part YP_001620079.1 transketolase requires thiamine pyrophosphate as a cofactor YP_001620080.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001620083.1 this protein contains two predicted transmembrane helices YP_001620088.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001620091.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_001620092.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001620095.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_001620096.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001620107.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_001620109.1 this protein contains 10 predicted transmembrane helices YP_001620112.1 this protein consists largely of an S1 RNA binding domain YP_001620113.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif YP_001620119.1 this protein contains one predicted N-terminal transmembrane helix YP_001620123.1 this protein contains one predicted N-terminal transmembrane helix YP_001620127.1 this protein contains seven predicted transmembrane helices YP_001620128.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001620133.1 this protein contains one predicted N-terminal transmembrane helix YP_001620134.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_001620135.1 this protein contains seven predicted transmembrane helices YP_001620138.1 this protein contains six predicted N-terminal transmembrane helices YP_001620140.1 forms a direct contact with the tRNA during translation YP_001620142.1 this protein contains one predicted N-terminal transmembrane domain YP_001620143.1 this protein contains 12 predicted transmembrane helices YP_001620147.1 this protein contains 10 predicted transmembrane helices YP_001620150.1 this protein contains four predicted transmembrane helices YP_001620152.1 this protein contains three predicted transmembrane helices YP_001620161.1 this protein contains one predicted N-terminal transmembrane helix YP_001620165.1 this protein contains two predicted transmembrane helices YP_001620167.1 this protein contains four predicted transmembrane helices YP_001620171.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001620173.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001620176.1 this protein contains seven predicted transmembrane helices YP_001620178.1 this protein contains three predicted transmembrane helices YP_001620181.1 this protein contains one predicted N-terminal transmembrane helix YP_001620183.1 this protein contains one predicted N-terminal transmembrane helix YP_001620185.1 this protein contains one predicted N-terminal transmembrane helix YP_001620187.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001620188.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001620189.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001620190.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001620192.1 this protein contains one predicted N-terminal transmembrane helix YP_001620198.1 this protein contains two predicted N-terminal transmembrane helices YP_001620201.1 this protein contains six predicted transmembrane helices YP_001620202.1 this protein contains five predicted transmembrane helices YP_001620212.1 this protein contains one predicted N-terminal transmembrane helix YP_001620215.1 this protein contains two predicted transmembrane helices YP_001620220.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001620223.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001620224.1 this protein contains four predicted N-terminal transmembrane helices YP_001620234.1 this protein contains six predicted N-terminal transmembrane helices YP_001620235.1 this protein contains five predicted N-terminal transmembrane helices YP_001620236.1 this protein contains one predicted N-terminal transmembrane helix YP_001620242.1 this protein similar to putative 3-carboxymuconate cyclase YP_001620244.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_001620248.1 this protein contains three predicted transmembrane helices YP_001620250.1 this protein contains seven predicted transmembrane helices YP_001620257.1 required for 70S ribosome assembly YP_001620264.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_001620269.1 this protein contains one predicted N-terminal transmembrane helix YP_001620271.1 this protein contains one predicted N-terminal transmembrane helix YP_001620272.1 this protein contains one predicted N-terminal transmembrane helix YP_001620273.1 this protein contains six predicted transmembrane helices YP_001620274.1 this protein contains six predicted transmembrane helices YP_001620275.1 this protein contains one predicted N-terminal transmembrane helix YP_001620276.1 this protein contains six predicted transmembrane helices YP_001620277.1 this protein contains six predicted transmembrane helices YP_001620278.1 this protein contains five predicted transmembrane helices YP_001620290.1 this protein contains four predicted transmembrane helices YP_001620294.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001620298.1 YifA family contains the sigma-54 modulation protein family and the S30AE family of ribosomal proteins YP_001620302.1 Essential for recycling GMP and indirectly, cGMP YP_001620306.1 this protein contains 12 predicted transmembrane helices YP_001620315.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_001620320.1 this protein contains two predicted N-terminal transmembrane helices YP_001620325.1 this protein contains six predicted N-terminal transmembrane helices YP_001620327.1 this protein contains one predicted N-terminal transmembrane helix YP_001620330.1 this protein contains six predicted transmembrane helices YP_001620333.1 this protein contains one predicted N-terminal transmembrane helix YP_001620340.1 this protein contains six predicted transmembrane helices YP_001620341.1 this protein contains three predicted C-terminal transmembrane domains YP_001620354.1 this protein contains seven predicted transmembrane helices YP_001620355.1 putative Mrp-related protein YP_001620357.1 this protein contains six predicted transmembrane helices YP_001620359.1 this protein contains two predicted N-terminal transmembrane helices YP_001620362.1 involved in the peptidyltransferase reaction during translation YP_001620364.1 this protein contains one predicted N-terminal transmembrane helix YP_001620368.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001620370.1 this protein contains six predicted transmembrane helices YP_001620373.1 this protein contains nine predicted transmembrane helices YP_001620377.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001620383.1 this protein contains three predicted N-terminal transmembrane helices YP_001620385.1 this protein contains one predicted N-terminal transmembrane helix YP_001620386.1 this protein contains 10 predicted transmembrane helices YP_001620387.1 this protein contains 8 predicted transmembrane helices YP_001620390.1 this protein contains one predicted N-terminal transmembrane helix YP_001620391.1 this protein contains one predicted N-terminal transmembrane helix YP_001620392.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_001620393.1 dehydrogenase YP_001620395.1 aminomethyltransferase YP_001620397.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_001620398.1 this protein contains five predicted transmembrane helices YP_001620400.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_001620401.1 this protein contains three predicted transmembrane helices YP_001620404.1 patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids YP_001620405.1 this protein contains 8 predicted transmembrane helices YP_001620407.1 this protein contains four predicted transmembrane helices YP_001620414.1 this protein contains five predicted N-terminal transmembrane helices YP_001620415.1 this protein contains six predicted N-terminal transmembrane helices YP_001620416.1 this protein contains six predicted transmembrane helices YP_001620417.1 enzyme from Treponema denticola exhibits NADH-dependent trans-2-enoyl-CoA reductase activity YP_001620423.1 this protein contains one predicted N-terminal transmembrane domain YP_001620425.1 this protein contains 8 predicted transmembrane helices YP_001620438.1 this protein contains 2 predicted N-terminal transmembrane domains YP_001620440.1 this protein contains nine predicted transmembrane helices YP_001620441.1 N-terminal part contains HTH DNA-binding domain. C-terminal part of this protein forms the transmembrane anchor (six predicted transmembrane helices) YP_001620443.1 this protein contains six predicted transmembrane helices YP_001620445.1 this protein contains one predicted N-terminal transmembrane helix YP_001620447.1 this protein contains seven predicted transmembrane helices YP_001620448.1 this protein contains nine predicted transmembrane helices YP_001620449.1 this protein contains one predicted transmembrane helix YP_001620450.1 this protein contains three predicted N-terminal transmembrane domains YP_001620451.1 this protein contains six predicted transmembrane helices YP_001620462.1 this protein contains one predicted N-terminal transmembrane helix YP_001620464.1 this protein contains 12 predicted transmembrane helices YP_001620467.1 this protein contains five predicted transmembrane helices YP_001620468.1 this protein contains six predicted transmembrane helices YP_001620469.1 this protein contains one predicted N-terminal transmembrane helix YP_001620478.1 this protein contains one predicted N-terminal transmembrane domain YP_001620481.1 this protein contains 8 predicted transmembrane helices YP_001620485.1 this protein contains 11 predicted transmembrane helices; this protein is similar to PfoR protein of C. perfringens, that was initially described as regulator of the pfoA gene, encoding perfringolysin O(theta-toxin). However, recent study by Milena et al (2002) dispoves the regulatory role of PfoR. YP_001620486.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_001620487.1 this protein contains 12 predicted transmembrane helices YP_001620489.1 this protein contains seven predicted transmembrane helices YP_001620490.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_001620491.1 this protein contains 8 predicted transmembrane helices YP_001620492.1 this protein contains 8 predicted transmembrane helices YP_001620495.1 this protein contains one predicted N-terminal transmembrane helix YP_001620504.1 this protein contains one predicted N-terminal transmembrane domain YP_001620505.1 this protein contains four predicted transmembrane domains YP_001620510.1 this protein contains one N-terminal predicted transmembrane domain. C-terminal part is cytosolic. YP_001620511.1 this protein contains 12 predicted transmembrane helices YP_001620515.1 this protein contains four predicted transmembrane domains YP_001620517.1 this protein contains three predicted transmembrane domains YP_001620518.1 this is an intracellular membrane-anchored protein YP_001620521.1 this protein is similar to luciferases, that catalyse the oxidation of long-chain aldehydes to carboxylic acids and release energy in the form of visible light YP_001620532.1 DegV protein structure indicates that this family has the molecular function of fatty-acid binding and may play a role in the cellular functions of fatty acid transport or metabolism YP_001620538.1 this protein contains 12 predicted transmembrane helices YP_001620539.1 this protein contains six predicted transmembrane helices YP_001620541.1 this protein contains five predicted transmembrane helices YP_001620544.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_001620548.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001620553.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001620558.1 this is Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein YP_001620560.1 this is a phospholipase/carboxylesterase family member YP_001620561.1 this protein contains two predicted N-terminal transmembrane domains YP_001620569.1 this protein contains three predicted transmembrane helices YP_001620579.1 excisionase is the phage-encoded protein involved in excisive recombination by regulating the assembly of the excisive intasome and by inhibiting viral integration YP_001620598.1 this protein is similar to phage protein YP_001620604.1 similar to Caudovirus prohead protease; such proteins are found in a number of bacteria possibly as the result of horizontal transfer YP_001620610.1 this protein is similar to phage protein YP_001620612.1 this protein contains three predicted transmembrane domains YP_001620621.1 this protein contains two predicted transmembrane helices YP_001620622.1 this protein contains one predicted N-terminal transmembrane helix YP_001620624.1 this protein contains one predicted N-terminal transmembrane domain. YP_001620630.1 this protein contains one predicted N-terminal transmembrane helix YP_001620633.1 this protein contains 11 predicted transmembrane helices YP_001620636.1 this protein contains 8 predicted transmembrane domains YP_001620640.1 this protein contains six predicted transmembrane helices YP_001620641.1 this protein contains one predicted N-terminal transmembrane helix YP_001620644.1 this protein contains six predicted transmembrane helices YP_001620651.1 this protein contains 10 predicted transmembrane helices YP_001620652.1 this protein contains 9 predicted transmembrane helices YP_001620653.1 this protein contains one predicted N-terminal transmembrane helix YP_001620654.1 this protein contains one predicted N-terminal transmembrane helix YP_001620655.1 this protein contains four predicted transmembrane helices YP_001620656.1 this protein contains three predicted transmembrane domains YP_001620657.1 this protein contains one predicted N-terminal transmembrane helix YP_001620658.1 this protein contains one predicted N-terminal transmembrane helix YP_001620663.1 this protein contains four predicted N-terminal transmembrane helices YP_001620664.1 this protein contains one predicted N-terminal transmembrane helix YP_001620665.1 this protein contains six predicted N-terminal transmembrane helices YP_001620666.1 this protein contains three predicted transmembrane helices YP_001620667.1 this protein contains one predicted N-terminal transmembrane helix YP_001620668.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001620673.1 this protein contains one predicted N-terminal transmembrane helix YP_001620676.1 this protein contains two predicted transmembrane helices YP_001620678.1 this protein contains 13 predicted transmembrane helices YP_001620684.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases YP_001620685.1 this protein contains four predicted N-terminal transmembrane helices YP_001620693.1 surE disruption decreased the survivability of E.coli cells. Thus, SurE may be involved in stress response. One member of SurE family can complement a mutation in acid phosphatase, suggesting that members of this family could be phosphatases. YP_001620700.1 this protein contains five predicted transmembrane helices YP_001620704.1 this protein contains four predicted transmembrane helices YP_001620707.1 this protein contains one predicted N-terminal transmembrane helix YP_001620710.1 this protein contains six predicted transmembrane helices YP_001620711.1 this protein contains six predicted transmembrane helices YP_001620712.1 this protein contains one predicted N-terminal transmembrane helix YP_001620713.1 this protein contains seven predicted transmembrane helices YP_001620714.1 this protein contains four predicted transmembrane helices YP_001620715.1 this protein contains six predicted transmembrane helices YP_001620716.1 this protein contains one predicted N-terminal transmembrane helix YP_001620718.1 this protein contains one predicted N-terminal transmembrane helix YP_001620724.1 this protein contains two predicted transmembrane domains YP_001620726.1 this protein contains four predicted transmembrane helices YP_001620729.1 this protein contains three predicted transmembrane helices YP_001620730.1 LemA-like protein; contains one predicted transmembrane helix YP_001620731.1 this protein contains six predicted transmembrane helices YP_001620734.1 this protein contains 8 predicted transmembrane helices YP_001620737.1 ATPase homolog 1-like protein; this entry belongs to the family of eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 YP_001620738.1 this protein contains three predicted transmembrane helices YP_001620742.1 this protein contains six predicted transmembrane helices YP_001620743.1 TmrB was found in Thermococcus litoralis (Archaeon). TmrB was characterized as direct sugar-specific transcriptional regulator of the trehalose/maltose ABC transporter and tmrB itself. YP_001620749.1 this protein contains 8 predicted transmembrane helices YP_001620750.1 ArsR family includes several proteins that appear to dissociate from DNA in the presence of metal ions YP_001620751.1 this protein contains 6 predicted transmembrane helices YP_001620754.1 this protein contains 5 predicted transmembrane helices YP_001620755.1 lysine biosynthesis protein YP_001620760.1 this protein contains 12 predicted transmembrane helices YP_001620761.1 this protein contains three predicted transmembrane helices YP_001620762.1 the BspA antigen participates in the adherence and colonization of oral surfaces as it binds strongly to fibronectin and fibrinogen of the extracellular matrix in a dose-dependent manner. YP_001620764.1 this protein contains six predicted transmembrane helices YP_001620765.1 this protein contains six predicted transmembrane helices YP_001620768.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001620770.1 this entry is highly similar to the transposase N-terminal domain YP_001620771.1 this protein contains a single copy of the Heavy-Metal-Associated (HMA) domain YP_001620774.1 this protein contains 8 predicted transmembrane helices YP_001620782.1 this protein contains one predicted N-terminal transmembrane helix YP_001620783.1 this protein contains 8 predicted transmembrane helices YP_001620786.1 this protein contains one N-terminal and one C-terminal transmembrane helices YP_001620787.1 this protein contains 8 predicted transmembrane helices YP_001620788.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_001620789.1 this protein contains 2 predicted transmembrane helices YP_001620790.1 mevalonate is a key intermediate in the biosynthesis of sterols and non-sterol isoprenes in the mevalonate pathway YP_001620793.1 indigoidine is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function remained is unknown. YP_001620794.1 this protein contains 12 predicted transmembrane helices YP_001620797.1 this protein contains three predicted transmembrane helices YP_001620808.1 this protein contains four predicted transmembrane helices YP_001620809.1 this protein contains three predicted transmembrane helices YP_001620813.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001620816.1 this protein contains 8 predicted transmembrane helices YP_001620823.1 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC YP_001620824.1 this protein contains five predicted transmembrane helices YP_001620826.1 this protein contains three predicted N-terminal transmembrane helices YP_001620827.1 this protein contains one predicted N-terminal transmembrane helix YP_001620830.1 this protein contains 8 predicted N-terminal transmembrane helices YP_001620834.1 this protein contains five predicted transmembrane helices YP_001620835.1 this protein contains six predicted transmembrane helices YP_001620836.1 this protein contains one predicted N-terminal transmembrane helix YP_001620837.1 this protein contains one predicted N-terminal transmembrane helix YP_001620840.1 Bgv accessory factor (Baf) was identified as an accessory factor of two-component regulatory system BgvAS in Bordetella pertussis; this protein contains one predicted N-terminal transmembrane helix YP_001620842.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_001620843.1 this protein contains duplicated ATPase domain YP_001620844.1 this protein contains one predicted N-terminal transmembrane helix YP_001620846.1 this protein contains one predicted N-terminal transmembrane domain YP_001620848.1 this protein contains six predicted transmembrane helices YP_001620850.1 this protein contains one predicted N-terminal transmembrane helix YP_001620855.1 EAL domain is found in diverse bacterial signaling proteins YP_001620858.1 Ham1 protein related YP_001620859.1 this protein contains seven predicted transmembrane helices YP_001620860.1 ankyrin repeats mediate protein-protein interactions in very diverse families of proteins YP_001620863.1 this protein contains duplicated GTP-binding domain YP_001620869.1 the shikimate pathway is a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. YP_001620873.1 this protein contains four predicted C-terminal transmembrane helices YP_001620875.1 this protein contains one predicted N-terminal transmembrane helix YP_001620876.1 this protein contains one predicted N-terminal transmembrane helix YP_001620877.1 this protein contains five predicted transmembrane helices YP_001620878.1 this protein contains six predicted transmembrane helices YP_001620880.1 integral membrane protein: contains six predicted transmembrane helices YP_001620881.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_001620884.1 the comE locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA YP_001620885.1 the comE locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA; this protein contains one predicted N-terminal transmembrane helix YP_001620890.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001620894.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_001620895.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001620897.1 this protein contains four predicted transmembrane helices YP_001620900.1 this protein contains 12 predicted transmembrane helices YP_001620906.1 this protein contains six predicted transmembrane helices YP_001620907.1 this protein contains ten predicted transmembrane helices YP_001620909.1 this protein contains three predicted transmembrane helices YP_001620910.1 this protein contains two predicted transmembrane domains YP_001620912.1 this protein contains two predicted transmembrane helices YP_001620914.1 this protein contains two predicted transmembrane domains YP_001620921.1 this protein contains two predicted transmembrane helices YP_001620924.1 this protein contains two predicted N-terminal transmembrane helices YP_001620927.1 this protein contains four predicted transmembrane helices YP_001620928.1 this protein contains five predicted transmembrane helices YP_001620940.1 this protein contains two predicted transmembrane helices YP_001620941.1 this protein contains one predicted N-terminal transmembrane helix YP_001620943.1 this protein contains six predicted transmembrane helices YP_001620944.1 this protein contains nine predicted transmembrane helices YP_001620949.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_001620950.1 this protein contains six predicted C-terminal transmembrane helices YP_001620951.1 this protein contains four predicted C-terminal transmembrane helices YP_001620952.1 this protein contains 10 predicted transmembrane helices YP_001620953.1 this protein contains one predicted N-terminal transmembrane helix YP_001620954.1 this protein contains six predicted transmembrane helices YP_001620955.1 this protein contains six predicted transmembrane helices YP_001620956.1 this protein contains one predicted N-terminal transmembrane helix YP_001620958.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex YP_001620963.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits YP_001620964.1 this protein contains 8 predicted C-terminal transmembrane helices YP_001620966.1 this protein contains one predicted transmembrane domain YP_001620968.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001620971.1 this protein contains one predicted transmembrane helix in the central part YP_001620972.1 this protein contains one predicted N-terminal transmembrane helix YP_001620973.1 this protein contains two predicted transmembrane helices YP_001620974.1 this protein contains six predicted transmembrane helices YP_001620975.1 this protein contains three predicted transmembrane helices YP_001620976.1 this protein contains two predicted transmembrane domains YP_001620979.1 this protein contains six predicted N-terminal transmembrane helices YP_001620980.1 this protein contains six predicted N-terminal transmembrane helices YP_001620983.1 this protein contains one predicted transmembrane helix in the central part YP_001620985.1 this protein contains one predicted N-terminal transmembrane helix YP_001620988.1 this protein contains four predicted transmembrane helices YP_001620989.1 this protein contains one predicted N-terminal transmembrane helix YP_001620990.1 this protein contains three predicted transmembrane helices YP_001620991.1 this protein contains one predicted N-terminal transmembrane helix YP_001620992.1 this protein contains one predicted N-terminal transmembrane helix YP_001620993.1 this protein contains one predicted N-terminal transmembrane helix, and one C-terminal transmembrane helix with the extracellular loop in the middle YP_001620995.1 this protein contains three predicted N-terminal transmembrane helices YP_001620996.1 this protein contains one predicted N-terminal transmembrane helix, and one C-terminal transmembrane helix with the extracellular loop in the middle YP_001620997.1 this protein contains one predicted N-terminal transmembrane helix YP_001620998.1 this protein contains one predicted N-terminal transmembrane helix YP_001620999.1 this protein contains one predicted N-terminal transmembrane helix YP_001621000.1 this protein contains one predicted N-terminal transmembrane helix YP_001621001.1 this protein contains three predicted N-terminal transmembrane helices YP_001621006.1 this protein contains one predicted N-terminal transmembrane helix, and one C-terminal transmembrane helix with the extracellular loop in the middle YP_001621008.1 this protein contains one predicted N-terminal transmembrane domain YP_001621009.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001621012.1 this protein contains 8 predicted transmembrane helices YP_001621013.1 this protein contains seven predicted transmembrane helices YP_001621014.1 this protein contains one predicted N-terminal transmembrane helix YP_001621024.1 this protein contains 14 predicted transmembrane helices YP_001621026.1 this protein contains nine predicted transmembrane helices YP_001621035.1 this protein contains one predicted N-terminal transmembrane helix YP_001621045.1 this protein contains two predicted transmembrane helices YP_001621046.1 this protein contains six predicted transmembrane helices YP_001621049.1 this protein contains duplicated glycosyl hydrolase domain YP_001621052.1 this protein contains six predicted transmembrane helices YP_001621053.1 this protein contains six predicted transmembrane helices YP_001621054.1 this protein contains one predicted N-terminal transmembrane helix YP_001621060.1 this protein contains one predicted transmembrane domain YP_001621061.1 this protein contains one predicted N-terminal transmembrane helix YP_001621062.1 this protein contains three predicted transmembrane domains YP_001621064.1 this protein contains one predicted N-terminal transmembrane helix YP_001621065.1 this protein contains one predicted N-terminal transmembrane helix YP_001621075.1 this protein contains three predicted N-terminal transmembrane helix YP_001621078.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_001621079.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_001621080.1 this protein contains 12 predicted transmembrane helices YP_001621084.1 this protein contains 8 predicted transmembrane helices YP_001621086.1 this protein contains one predicted N-terminal transmembrane helix YP_001621089.1 this protein contains duplicated ATPase domain YP_001621090.1 this protein contains six predicted transmembrane helices YP_001621091.1 this protein contains four predicted transmembrane helices YP_001621098.1 this protein contains four predicted transmembrane helices YP_001621099.1 this protein contains 11 predicted transmembrane helices YP_001621102.1 this protein contains three predicted N-terminal transmembrane helices YP_001621103.1 this protein contains one predicted N-terminal transmembrane helix YP_001621104.1 this protein contains one predicted N-terminal transmembrane helix, and one C-terminal transmembrane helix with the extracellular loop in the middle YP_001621111.1 this protein contains six predicted transmembrane helices YP_001621112.1 this protein contains three predicted N-terminal transmembrane helices YP_001621113.1 this protein contains two predicted transmembrane helices. YP_001621114.1 this protein contains three predicted transmembrane helices YP_001621117.1 this protein contains 8 predicted transmembrane helices YP_001621121.1 this protein contains one predicted N-terminal transmembrane helix YP_001621123.1 this protein contains five predicted transmembrane helices YP_001621124.1 this protein contains nine predicted transmembrane helices YP_001621126.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_001621127.1 this protein contains two predicted transmembrane domains YP_001621128.1 this protein contains two predicted transmembrane helices YP_001621130.1 Catalyzes the phosphorylation of UMP to UDP YP_001621131.1 this gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor YP_001621137.1 this protein contains six predicted transmembrane helices YP_001621138.1 this protein contains four predicted transmembrane helices YP_001621139.1 this protein contains five predicted transmembrane helices YP_001621141.1 this protein contains one predicted N-terminal transmembrane helix, and one C-terminal transmembrane helix with the extracellular loop in the middle YP_001621143.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex YP_001621147.1 this protein contains four predicted transmembrane helices YP_001621148.1 this protein contains 8 predicted C-terminal transmembrane helices YP_001621153.1 this protein contains one predicted N-terminal transmembrane helix YP_001621154.1 this protein contains six predicted transmembrane helices YP_001621158.1 this protein contains three predicted N-terminal transmembrane helices YP_001621159.1 this protein contains one predicted C-terminal transmembrane helix YP_001621163.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_001621166.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_001621173.1 Required for the synthesis of the thiazole moiety YP_001621175.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001621180.1 this protein contains four predicted transmembrane helices YP_001621182.1 this protein contains one predicted N-terminal transmembrane helix YP_001621187.1 this protein contains one predicted N-terminal transmembrane helix YP_001621193.1 this protein contains two predicted N-terminal transmembrane helices YP_001621196.1 this protein contains six predicted transmembrane helices YP_001621197.1 this protein contains six predicted transmembrane helices YP_001621198.1 this protein contains one predicted N-terminal transmembrane helix YP_001621199.1 this protein contains three predicted transmembrane helices YP_001621200.1 this protein contains one predicted N-terminal transmembrane helix YP_001621202.1 this protein contains four predicted transmembrane helices YP_001621203.1 catalyzes the formation of asparagine from aspartate and ammonia YP_001621205.1 this protein contains one predicted N-terminal transmembrane helix YP_001621206.1 this protein contains four predicted N-terminal transmembrane helices YP_001621208.1 this protein contains three predicted N-terminal transmembrane helices; C-terminal part is predicted to be intracellular YP_001621209.1 this protein contains six predicted transmembrane helices YP_001621210.1 this protein contains six predicted transmembrane helices YP_001621212.1 this protein contains six predicted N-terminal transmembrane helices YP_001621213.1 this protein contains six predicted N-terminal transmembrane helices YP_001621216.1 this protein contains one predicted N-terminal transmembrane helix YP_001621222.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_001621224.1 this protein contains 8 predicted transmembrane helices YP_001621226.1 this protein contains one predicted N-terminal and five C-terminal transmembrane helices YP_001621227.1 this protein contains 8 predicted transmembrane helices YP_001621228.1 this protein contains one predicted N-terminal transmembrane helix YP_001621233.1 this protein contains 8 predicted transmembrane helices YP_001621235.1 this protein contains one predicted N-terminal transmembrane helix YP_001621237.1 this protein contains two predicted transmembrane helices YP_001621243.1 this protein contains one predicted N-terminal transmembrane helix YP_001621245.1 this protein contains four predicted transmembrane helices YP_001621249.1 this protein has weak similarity with the HsdR protein, specific methylase of the type I restriction-modification system YP_001621250.1 this protein contains one predicted N-terminal transmembrane helix, and one C-terminal transmembrane helix with the extracellular loop in the middle YP_001621251.1 DNA-binding HTH motif occupies N-terminal part of this protein, while C-terminal part contains four predicted transmembrane helices YP_001621252.1 this protein contains 8 predicted transmembrane helices YP_001621253.1 this protein contains one predicted N-terminal transmembrane helix YP_001621255.1 this protein contains six predicted transmembrane helices YP_001621256.1 this protein contains six predicted transmembrane helices YP_001621257.1 this protein contains one predicted N-terminal transmembrane helix YP_001621260.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_001621262.1 ribonucleoside-diphosphate reductase of class Ib is encoded in four different genes: nrdH, nrdI, nrdA and nrdB. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised YP_001621264.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_001621266.1 this protein contains six predicted transmembrane helices YP_001621267.1 this protein contains three predicted transmembrane helices YP_001621268.1 this protein contains three predicted N-terminal transmembrane helices YP_001621272.1 this protein contains six predicted transmembrane helices YP_001621273.1 this protein contains six predicted transmembrane helices YP_001621274.1 this protein contains one predicted N-terminal transmembrane helix YP_001621275.1 this protein contains six predicted transmembrane helices YP_001621279.1 this protein contains six predicted transmembrane helices YP_001621284.1 the exact molecular function of this protein is uncertain. The Fic protein is involved in cell division and is suggested to be involved in the synthesis of PAB or folate, indicating that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism YP_001621286.1 this protein contains one predicted N-terminal transmembrane helix, and one C-terminal transmembrane helix with the extracellular loop in the middle YP_001621289.1 this protein contains two predicted N-terminal transmenmbrane helices YP_001621291.1 this protein contains one predicted N-terminal transmembrane helix YP_001621294.1 this protein contains one predicted N-terminal transmembrane helix YP_001621295.1 this protein contains four predicted transmembrane helices YP_001621301.1 this protein contains ten predicted transmembrane helices YP_001621304.1 this protein contains one predicted N-terminal transmembrane helix YP_001621308.1 this protein contains one predicted N-terminal transmembrane helix YP_001621312.1 this protein contain 8 predicted N-terminal transmembrane helices YP_001621314.1 this protein contains four predicted transmembrane helices YP_001621318.1 this protein contains one predicted N-terminal transmembrane helix YP_001621320.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001621321.1 this protein contains one predicted N-terminal transmembrane helix YP_001621322.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001621323.1 GNAT superfamily protein YP_001621328.1 this protein contains six predicted transmembrane helices YP_001621330.1 this protein contains four predicted transmembrane helices YP_001621331.1 in the nitrogen-fixing bacteria nif operon encodes proteins that execute specific functions in the assembly of nitrogenase, a complex metalloenzyme that catalyses the fixation of nitrogen. NifU is a protein associated with the nif operon. This entry occupies ony C-terminal domain of the NifU proteins YP_001621334.1 this protein contains three predicted N-terminal transmembrane helices YP_001621335.1 this protein contains one predicted transmembrane domain YP_001621336.1 this protein contains three predicted N-terminal transmembrane helices YP_001621339.1 this protein contains 12 predicted transmembrane helices YP_001621340.1 catalyzes the hydrolysis of both purine and pyrimidine ribonucleosides YP_001621344.1 this protein contains 12 predicted transmembrane helices YP_001621346.1 activity of this chaperone is redox regulated YP_001621347.1 this protein contains one predicted N-terminal transmembrane helix YP_001621348.1 this protein contains three predicted transmembrane helices YP_001621354.1 the S4 domain was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation. The S4 domain probably mediates binding to RNA YP_001621356.1 this protein contains three predicted transmembrane helices YP_001621358.1 this protein contains two predicted transmembrane helices YP_001621363.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001621364.1 this protein contains seven predicted transmembrane helices YP_001621370.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001621371.1 this protein contains five predicted transmembrane helices YP_001621374.1 this protein contains one predicted N-terminal transmembrane helix YP_001621375.1 this protein contains one predicted N-terminal transmembrane helix, and one C-terminal transmembrane helix with the extracellular loop in the middle YP_001621376.1 this protein contains one predicted N-terminal transmembrane helix YP_001621377.1 this protein contains one predicted N-terminal transmembrane helix YP_001621378.1 this protein contains six predicted transmembrane helices YP_001621379.1 this protein contains six predicted transmembrane helices YP_001621381.1 this protein contains six predicted transmembrane helices YP_001621384.1 this protein contains 8 predicted transmembrane helices YP_001621386.1 this protein contains one N-terminal and three C-terminal transmembrane helices YP_001621389.1 this protein contains 8 predicted N-terminal transmembrane helices; C-terminal part f this protein is extracellular YP_001621390.1 this protein contains seven predicted transmembrane helices YP_001621392.1 this protein contains 4 predicted transmembrane helices YP_001621394.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001621396.1 this protein contains one predicted N-terminal transmembrane helix YP_001621398.1 this protein contains six predicted transmembrane helices