-- dump date 20240506_001908 -- class Genbank::Contig -- table contig_comment -- id comment NC_013740.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001859.1.REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319 Greengenes ID :: 13852REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319 Greengenes ID :: 13852 Isolation Site :: Pig gutREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319 Greengenes ID :: 13852 Isolation Site :: Pig gut Host Name :: Sus scrofaREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319 Greengenes ID :: 13852 Isolation Site :: Pig gut Host Name :: Sus scrofa Body Sample Site :: Gastrointestinal tractREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319 Greengenes ID :: 13852 Isolation Site :: Pig gut Host Name :: Sus scrofa Body Sample Site :: Gastrointestinal tract Body Sample SubSite :: Intestinal tractREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319 Greengenes ID :: 13852 Isolation Site :: Pig gut Host Name :: Sus scrofa Body Sample Site :: Gastrointestinal tract Body Sample SubSite :: Intestinal tract Oxygen Requirement :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319 Greengenes ID :: 13852 Isolation Site :: Pig gut Host Name :: Sus scrofa Body Sample Site :: Gastrointestinal tract Body Sample SubSite :: Intestinal tract Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319 Greengenes ID :: 13852 Isolation Site :: Pig gut Host Name :: Sus scrofa Body Sample Site :: Gastrointestinal tract Body Sample SubSite :: Intestinal tract Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: NonmotileREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319 Greengenes ID :: 13852 Isolation Site :: Pig gut Host Name :: Sus scrofa Body Sample Site :: Gastrointestinal tract Body Sample SubSite :: Intestinal tract Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319 Greengenes ID :: 13852 Isolation Site :: Pig gut Host Name :: Sus scrofa Body Sample Site :: Gastrointestinal tract Body Sample SubSite :: Intestinal tract Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319 Greengenes ID :: 13852 Isolation Site :: Pig gut Host Name :: Sus scrofa Body Sample Site :: Gastrointestinal tract Body Sample SubSite :: Intestinal tract Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37CREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319 Greengenes ID :: 13852 Isolation Site :: Pig gut Host Name :: Sus scrofa Body Sample Site :: Gastrointestinal tract Body Sample SubSite :: Intestinal tract Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 7REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319 Greengenes ID :: 13852 Isolation Site :: Pig gut Host Name :: Sus scrofa Body Sample Site :: Gastrointestinal tract Body Sample SubSite :: Intestinal tract Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 7 Gram Staining :: gram-REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319 Greengenes ID :: 13852 Isolation Site :: Pig gut Host Name :: Sus scrofa Body Sample Site :: Gastrointestinal tract Body Sample SubSite :: Intestinal tract Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319 Greengenes ID :: 13852 Isolation Site :: Pig gut Host Name :: Sus scrofa Body Sample Site :: Gastrointestinal tract Body Sample SubSite :: Intestinal tract Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319 Greengenes ID :: 13852 Isolation Site :: Pig gut Host Name :: Sus scrofa Body Sample Site :: Gastrointestinal tract Body Sample SubSite :: Intestinal tract Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Intestinal tractREFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319 Greengenes ID :: 13852 Isolation Site :: Pig gut Host Name :: Sus scrofa Body Sample Site :: Gastrointestinal tract Body Sample SubSite :: Intestinal tract Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Intestinal tract ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001859.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083224 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Name :: GCF_000025305.1-RS_2024_03_12 Annotation Date :: 03/12/2024 00:37:18 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.7 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,177 CDSs (total) :: 2,095 Genes (coding) :: 2,092 CDSs (with protein) :: 2,092 Genes (RNA) :: 82 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 60 ncRNAs :: 4 Pseudo Genes (total) :: 3 CDSs (without protein) :: 3 Pseudo Genes (ambiguous residues) :: 0 of 3 Pseudo Genes (frameshifted) :: 1 of 3 Pseudo Genes (incomplete) :: 2 of 3 Pseudo Genes (internal stop) :: 0 of 3 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## ##Metadata-START## Organism Display Name :: Acidaminococcus fermentans VR4, DSM 20731 Culture Collection ID :: DSM 20731, ATCC 25085 GOLD Stamp ID :: Gi02319 Greengenes ID :: 13852 Isolation Site :: Pig gut Host Name :: Sus scrofa Body Sample Site :: Gastrointestinal tract Body Sample SubSite :: Intestinal tract Oxygen Requirement :: Anaerobe Cell Shape :: Coccus-shaped Motility :: Nonmotile Sporulation :: Nonsporulating Temperature Range :: Mesophile Temperature Optimum :: 37C pH :: 7 Gram Staining :: gram- Biotic Relationship :: Free living Diseases :: None Habitat :: Host, Intestinal tract ##Metadata-END## COMPLETENESS: full length.