-- dump date   	20140618_185603
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_973999.1	KEGG: rme:Rmet_4020 hypothetical protein
YP_974000.1	PFAM: peptidase M48, Ste24p; KEGG: dar:Daro_0023 peptidase M48, Ste24p
YP_974003.1	PFAM: TraG domain protein; KEGG: dar:Daro_2331 hypothetical protein
YP_974004.1	PFAM: TraH family protein; KEGG: eba:ebA6635 hypothetical protein
YP_974005.1	KEGG: dar:Daro_2662 hypothetical protein
YP_974006.1	KEGG: eba:ebA6631 hypothetical protein
YP_974007.1	TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell
YP_974009.1	KEGG: dar:Daro_2659 hypothetical protein
YP_974010.1	PFAM: TraU family protein; KEGG: eba:ebA6622 hypothetical protein
YP_974011.1	KEGG: dar:Daro_2324 hypothetical protein
YP_974012.1	KEGG: eba:ebA6617 hypothetical protein
YP_974014.1	KEGG: dar:Daro_2653 hypothetical protein
YP_974015.1	TIGRFAM: Prokaryotic membrane lipoprotein lipid attachment site; KEGG: eba:ebA6611 hypothetical protein
YP_974016.1	KEGG: rme:Rmet_6169 protein-disulfide isomerase
YP_974017.1	PFAM: TraB pilus assembly family protein; KEGG: dar:Daro_2650 TraB pilus assembly
YP_974018.1	KEGG: dar:Daro_2316 hypothetical protein
YP_974019.1	KEGG: dar:Daro_2315 plasmid-like conjugative transfer protein TraE
YP_974020.1	KEGG: dar:Daro_2647 TraL
YP_974023.1	PFAM: Lytic transglycosylase, catalytic; KEGG: rme:Rmet_6296 lytic transglycosylase, catalytic
YP_974024.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: mfa:Mfla_0815 two component transcriptional regulator, LuxR family
YP_974025.1	PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: hch:HCH_00840 signal transduction histidine kinase, glucose-6-phosphate specific
YP_974026.1	KEGG: pat:Patl_1718 hypothetical protein
YP_974027.1	KEGG: fal:FRAAL3938 hypothetical protein
YP_974028.1	KEGG: sal:Sala_2489 TrwC protein
YP_974029.1	KEGG: rso:RSc2990 probable thiol:disulfide interchange transmembrane protein
YP_974030.1	KEGG: lpn:lpg2078 TraD
YP_974034.1	PFAM: Resolvase, N-terminal domain; KEGG: son:SOA0172 site-specific recombinase, resolvase family
YP_974038.1	PFAM: DNA repair protein RadC; KEGG: xac:XAC2179 RadC family protein
YP_974039.1	KEGG: rfr:Rfer_4386 hypothetical protein
YP_974042.1	PFAM: Methyltransferase type 11; KEGG: eci:UTI89_P088 hypothetical protein
YP_974044.1	KEGG: eba:p1B366 hypothetical protein
YP_974046.1	PFAM: protein of unknown function DUF932; KEGG: rme:Rmet_3034 protein of unknown function DUF932
YP_974047.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: swo:Swol_2539 single-strand binding protein
YP_974049.1	KEGG: pol:Bpro_4968 phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases like enzyme
YP_974050.1	PFAM: C-5 cytosine-specific DNA methylase; KEGG: pst:PSPTO_2386 C-5 cytosine-specific DNA methylase family protein
YP_974052.1	KEGG: rfr:Rfer_2821 hypothetical protein
YP_974053.1	PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: bcz:pE33L466_0012 possible DNA polymerase III fragment
YP_974054.1	KEGG: bam:Bamb_6604 hypothetical protein
YP_974055.1	KEGG: gox:GOX2704 RepA
YP_974056.1	KEGG: bxe:Bxe_C1184 predicted transcriptional regulator
YP_974057.1	PFAM: protein of unknown function DUF891; KEGG: bxe:Bxe_C1183 hypothetical protein
YP_974059.1	TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: fth:FTH_0421 chromosome partition protein B
YP_974060.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: net:Neut_2592 cobyrinic acid a,c-diamide synthase
YP_974062.1	KEGG: mes:Meso_3816 hypothetical protein
YP_974063.1	PFAM: transposase Tn3 family protein; KEGG: bxe:Bxe_C1202 transposase Tn3
YP_974065.1	KEGG: rru:Rru_A0225 metal dependent phosphohydrolase, HD region
YP_974066.1	KEGG: rfr:Rfer_1207 aspartyl protease-like
YP_974068.1	PFAM: NERD domain protein; KEGG: noc:Noc_0649 DNA topoisomerase I
YP_974069.1	KEGG: net:Neut_1890 conserved hypothetical protein
YP_974070.1	PFAM: OmpA/MotB domain protein; KEGG: dar:Daro_2645 OmpA/MotB
YP_974071.1	PFAM: histone family protein DNA-binding protein; KEGG: pol:Bpro_1551 histone-like DNA-binding protein
YP_974072.1	KEGG: bps:BPSL0759 hypothetical protein
YP_974073.1	PFAM: protein of unknown function DUF1173; KEGG: mes:Meso_4329 protein of unknown function DUF1173
YP_974074.1	PFAM: Zeta toxin family protein; KEGG: xac:XACb0057 hypothetical protein
YP_974075.1	KEGG: xom:XOO_0047 hypothetical protein
YP_974077.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: xft:PD1006 cell filamentation protein
YP_974081.1	KEGG: dar:Daro_2214 hypothetical protein
YP_974082.1	KEGG: dar:Daro_2528 hypothetical protein
YP_974083.1	PFAM: TOPRIM domain protein; domain of unknown function DUF1738; SMART: Toprim sub domain protein; KEGG: reu:Reut_D6521 toprim
YP_974084.1	PFAM: Resolvase, N-terminal domain; KEGG: xac:XACb0061 invertase recombinase-like protein
YP_974085.1	TIGRFAM: addiction module toxin, RelE/StbE family; KEGG: reu:Reut_D6454 plasmid stabilization system
YP_974086.1	KEGG: tbd:Tbd_1809 hypothetical protein
YP_974087.1	KEGG: ngo:NGO0873 DNA modification methylase M.NGOI; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase
YP_974088.1	KEGG: ngo:NGO0874 type II DNA restriction endonuclease R.NGOI
YP_974091.1	KEGG: sdn:Sden_0296 hypothetical protein
YP_974092.1	KEGG: reu:Reut_D6518 phage DNA methylase
YP_974093.1	KEGG: bam:Bamb_6620 hypothetical protein
YP_974094.1	PFAM: TraX family protein; KEGG: bam:Bamb_6621 TraX family protein
YP_974095.1	KEGG: bam:Bamb_6622 hypothetical protein
YP_974096.1	PFAM: Lytic transglycosylase, catalytic; KEGG: bam:Bamb_6623 lytic transglycosylase, catalytic
YP_974097.1	PFAM: TrbM family protein; KEGG: bam:Bamb_6624 TrbM family protein
YP_974098.1	PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: bam:Bamb_6625 TrbL/VirB6 plasmid conjugal transfer protein
YP_974099.1	KEGG: bam:Bamb_6626 entry exclusion protein TrbK
YP_974100.1	KEGG: bam:Bamb_6627 TrbJ protein of DNA transfer system
YP_974101.1	PFAM: conjugation TrbI family protein; KEGG: bam:Bamb_6628 conjugation TrbI family protein
YP_974102.1	PFAM: Conjugal transfer TrbH family protein; KEGG: bam:Bamb_6629 conjugal transfer TrbH family protein
YP_974103.1	type IV secretion system VirB9/CagX family
YP_974104.1	PFAM: Conjugal transfer protein; KEGG: bam:Bamb_6631 conjugal transfer protein
YP_974105.1	type IV secretion system ATPase VirB4 family
YP_974106.1	PFAM: Conjugal transfer TrbD family protein; KEGG: bam:Bamb_6633 conjugal transfer TrbD family protein
YP_974107.1	PFAM: Conjugal transfer protein TrbC; KEGG: bam:Bamb_6634 conjugal transfer protein TrbC
YP_974108.1	PFAM: type II secretion system protein E; KEGG: bam:Bamb_6635 type II secretion system protein E
YP_974109.1	TrbA repressor
YP_974110.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: bam:Bamb_6592 single-strand binding protein
YP_974111.1	PFAM: TrfA family protein; KEGG: bam:Bamb_6593 TrfA family protein
YP_974113.1	PFAM: transposase Tn3 family protein; KEGG: bxe:Bxe_C1202 transposase Tn3
YP_974114.1	KEGG: bam:Bamb_4312 hypothetical protein
YP_974115.1	PFAM: putative transposase; KEGG: sfx:S2705 putative transposase
YP_974116.1	PFAM: Hydratase/decarboxylase; KEGG: rha:RHA1_ro03880 4-oxalocrotonate decarboxylase
YP_974118.1	PFAM: transposase Tn3 family protein; KEGG: rme:Rmet_1544 transposase Tn3
YP_974119.1	PFAM: putative transposase; KEGG: sfx:S2705 putative transposase
YP_974120.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pfo:Pfl_0302 short-chain dehydrogenase/reductase SDR
YP_974122.1	TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: reu:Reut_D6454 plasmid stabilization system
YP_974123.1	TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: reu:Reut_D6453 RelB antitoxin
YP_974124.1	PFAM: Antirestriction protein; KEGG: reu:Reut_D6452 antirestriction protein
YP_974125.1	KEGG: reu:Reut_D6451 hypothetical protein
YP_974126.1	KEGG: reu:Reut_D6450 hypothetical protein
YP_974127.1	KEGG: reu:Reut_D6449 hypothetical protein
YP_974128.1	KEGG: reu:Reut_D6448 hypothetical protein
YP_974129.1	KEGG: reu:Reut_D6447 hypothetical protein
YP_974130.1	KEGG: reu:Reut_D6446 hypothetical protein
YP_974131.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: reu:Reut_D6445 cobyrinic acid a,c-diamide synthase
YP_974132.1	TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KorB domain protein; KEGG: bam:Bamb_6603 ParB-like partition proteins
YP_974133.1	KEGG: reu:Reut_D6443 hypothetical protein
YP_974134.1	KEGG: bam:Bamb_6605 putative conjugation protein TraO
YP_974135.1	KEGG: bam:Bamb_6606 hypothetical protein
YP_974136.1	KEGG: bam:Bamb_6607 TraM protein
YP_974137.1	KEGG: reu:Reut_D6529 transfer origin protein, TraL
YP_974138.1	KEGG: bam:Bamb_6609 TraK protein of DNA transfer system
YP_974140.1	KEGG: bam:Bamb_6610 TraJ protein of DNA transfer system
YP_974141.1	PFAM: Relaxase/mobilization nuclease family protein; KEGG: reu:Reut_D6526 relaxase/mobilization nuclease domain
YP_974142.1	KEGG: pau:PA14_15530 possible entry/exclusion protein TrbK
YP_974143.1	type IV secretion system VirD4 family
YP_974144.1	KEGG: bam:Bamb_6613 TraF protein of DNA transfer system
YP_974145.1	KEGG: bam:Bamb_6614 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; DNA topoisomerase, type IA, zn finger domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein
YP_974146.1	KEGG: bam:Bamb_6615 conjugal transfer protein
YP_984333.1	PFAM: NLP/P60 protein; KEGG: rfr:Rfer_0741 NLP/P60
YP_984334.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive
YP_984335.1	KEGG: tbd:Tbd_1042 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_984336.1	PFAM: regulatory proteins, IclR; KEGG: mag:amb2598 transcriptional regulator
YP_984337.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A1420 twin-arginine translocation pathway signal
YP_984338.1	KEGG: bxe:Bxe_A1159 hypothetical protein
YP_984339.1	KEGG: pol:Bpro_0029 hypothetical protein
YP_984340.1	Required for efficient pilin antigenic variation
YP_984341.1	PFAM: sodium:dicarboxylate symporter; KEGG: xac:XAC3471 C4-dicarboxylate transport protein
YP_984342.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: xcb:XC_0818 sensor histidine kinase
YP_984343.1	PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: xcb:XC_0816 transcriptional regulator LuxR/UhpA family
YP_984344.1	PFAM: nucleoside recognition domain protein; KEGG: rme:Rmet_3343 nucleoside recognition
YP_984345.1	KEGG: pol:Bpro_4168 hypothetical protein
YP_984346.1	catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA
YP_984347.1	PFAM: protein of unknown function DUF1130; KEGG: bbr:BB2477 hypothetical protein
YP_984348.1	KEGG: nha:Nham_2097 hypothetical protein
YP_984349.1	TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: rfr:Rfer_0023 transcriptional regulator, MerR family
YP_984350.1	PFAM: Heavy metal transport/detoxification protein; KEGG: bxe:Bxe_A3162 heavy metal binding protein
YP_984351.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rfr:Rfer_0024 heavy metal translocating P-type ATPase
YP_984352.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2354 methyl-accepting chemotaxis sensory transducer
YP_984353.1	KEGG: pen:PSEEN2125 hypothetical protein
YP_984354.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pol:Bpro_0063 NADH:flavin oxidoreductase/NADH oxidase
YP_984355.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rfr:Rfer_0047 glutathione S-transferase-like
YP_984356.1	PFAM: protein of unknown function UPF0153; KEGG: bbr:BB3393 hypothetical protein
YP_984357.1	PFAM: NADPH-dependent FMN reductase; KEGG: pol:Bpro_0072 NADPH-dependent FMN reductase
YP_984358.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_984359.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_984360.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pol:Bpro_0075 lysine exporter protein (LysE/YggA)
YP_984361.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_0076 cobyrinic acid a,c-diamide synthase
YP_984362.1	PFAM: protein of unknown function DUF1234; KEGG: rfr:Rfer_0052 protein of unknown function DUF1234
YP_984363.1	TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: pol:Bpro_0078 ParB-like partition proteins
YP_984364.1	PFAM: Methyltransferase type 12; KEGG: rfr:Rfer_0054 methyltransferase type 12
YP_984365.1	PFAM: Peptidoglycan-binding domain 1 protein; KEGG: bur:Bcep18194_B2884 hypothetical protein
YP_984366.1	PFAM: cytochrome c, class I; KEGG: pol:Bpro_3017 hypothetical protein
YP_984367.1	PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: pol:Bpro_3018 Mo-co oxidoreductase dimerisation domain
YP_984369.1	PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: dar:Daro_0521 sigma-70 region 2:sigma-70 region 4
YP_984370.1	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; Cupin 2, conserved barrel domain protein; KEGG: bpm:BURPS1710b_2619 transcriptional regulator, AraC family
YP_984371.1	PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_A1964 major facilitator superfamily MFS_1
YP_984372.1	PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_0111 FAD linked oxidase-like
YP_984373.1	PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase
YP_984374.1	PFAM: Calcium-binding EF-hand-containing protein; KEGG: pol:Bpro_0112 acid shock protein-like
YP_984375.1	TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: pol:Bpro_0113 ATP--cobalamin adenosyltransferase
YP_984376.1	TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_0061 phenylacetic acid degradation-related protein
YP_984377.1	KEGG: dar:Daro_3540 extracellular ligand-binding receptor
YP_984378.1	PFAM: acetyl-CoA hydrolase/transferase; KEGG: dar:Daro_2807 acetyl-CoA hydrolase/transferase
YP_984379.1	KEGG: dar:Daro_1795 hypothetical protein
YP_984380.1	TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: pol:Bpro_0117 uracil-xanthine permease
YP_984381.1	KEGG: pfo:Pfl_4308 chemotaxis sensory transducer, PAS/Pac sensor; TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_984382.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: eba:ebA5328 conserved hypothetical protein, predicted radical-SAM emzyme
YP_984383.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: xcc:XCC2647 hypothetical protein
YP_984385.1	AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase
YP_984386.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_B3561 regulatory protein, LysR:LysR, substrate-binding
YP_984387.1	PFAM: Uncharacterized protein UPF0065; KEGG: bpa:BPP3809 hypothetical protein
YP_984388.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pfo:Pfl_0118 L-carnitine dehydratase/bile acid-inducible protein F
YP_984389.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_B3560 L-carnitine dehydratase/bile acid-inducible protein F
YP_984390.1	KEGG: reu:Reut_B3559 hypothetical protein
YP_984391.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4073 uncharacterized protein UPF0065
YP_984392.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: eba:p2A7 putative acyl-CoA dehydrogenase
YP_984393.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: reu:Reut_B3556 acyl-CoA dehydrogenase, C-terminal
YP_984394.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_984395.1	TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: rfr:Rfer_2496 CDP-diacylglycerol--serine O-phosphatidyltransferase
YP_984396.1	TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: rfr:Rfer_0036 septum site-determining protein MinC
YP_984397.1	TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_0019 septum site-determining protein MinD
YP_984398.1	TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: rfr:Rfer_0034 cell division topological specificity factor MinE
YP_984399.1	PFAM: flavin reductase domain protein, FMN-binding; KEGG: rfr:Rfer_4057 flavin reductase-like, FMN-binding
YP_984400.1	PFAM: alpha/beta hydrolase fold; KEGG: bja:blr6083 putative hydrolase
YP_984401.1	PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_0150 extracellular ligand-binding receptor
YP_984402.1	PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_0148 D-amino-acid dehydrogenase
YP_984403.1	specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_984404.1	PFAM: regulatory protein, TetR; KEGG: pol:Bpro_0153 transcriptional regulator, TetR family
YP_984405.1	PFAM: UspA domain protein; KEGG: rfr:Rfer_0401 UspA
YP_984406.1	PFAM: metallophosphoesterase; KEGG: pol:Bpro_0155 metallophosphoesterase
YP_984407.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_0158 transcriptional regulator, LysR family
YP_984408.1	KEGG: pol:Bpro_0159 hypothetical protein
YP_984409.1	catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP
YP_984411.1	catalyzes the formation of 2-oxobutanoate from L-threonine
YP_984412.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bam:Bamb_0107 acyl-CoA dehydrogenase domain protein
YP_984414.1	PFAM: homocysteine S-methyltransferase; KEGG: pol:Bpro_0172 5-methyltetrahydrofolate--homocysteine S-methyltransferase
YP_984415.1	KEGG: rfr:Rfer_0459 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like
YP_984416.1	TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: rme:Rmet_5137 ribonucleoside-triphosphate reductase, anaerobic-like protein
YP_984417.1	KEGG: rme:Rmet_5138 hypothetical protein
YP_984418.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_984419.1	KEGG: rfr:Rfer_0458 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_984420.1	PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase
YP_984421.1	PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase
YP_984422.1	PFAM: Hemerythrin HHE cation binding domain protein; KEGG: rfr:Rfer_0892 hemerythrin HHE cation binding protein
YP_984423.1	KEGG: reu:Reut_B5055 nitric oxide reductase large subunit
YP_984424.1	Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon
YP_984425.1	KEGG: lma:LmjF35.0290 hypothetical protein, conserved
YP_984426.1	KEGG: pol:Bpro_4369 L-serine dehydratase 1; TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain
YP_984427.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_984428.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5058 uncharacterized protein UPF0065
YP_984429.1	PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_A1913 AMP-dependent synthetase and ligase
YP_984430.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5061 uncharacterized protein UPF0065
YP_984431.1	TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: reu:Reut_A0210 phenylacetic acid degradation-related protein
YP_984432.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A0242 hypothetical protein
YP_984433.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4501 twin-arginine translocation pathway signal
YP_984434.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bxe:Bxe_C0602 putative acyl-CoA dehydrogenase
YP_984435.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_5158 AMP-dependent synthetase and ligase
YP_984436.1	KEGG: rme:Rmet_5156 thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase
YP_984437.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: reu:Reut_A1668 NAD-dependent epimerase/dehydratase:short-chain dehydrogenase/reductase SDR
YP_984438.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_984439.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_5153 uncharacterized protein UPF0065
YP_984440.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sde:Sde_2377 oxidoreductase, short-chain dehydrogenase/reductase family
YP_984441.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: reu:Reut_B3551 enoyl-CoA hydratase/isomerase
YP_984442.1	SMART: regulatory proteins, IclR; KEGG: rme:Rmet_5157 transcriptional regulator, IclR family
YP_984443.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_2536 L-carnitine dehydratase/bile acid-inducible protein F
YP_984444.1	PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll2700 hypothetical protein
YP_984445.1	PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_0580 HpcH/HpaI aldolase
YP_984446.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0579 uncharacterized protein UPF0065
YP_984447.1	PFAM: MmgE/PrpD family protein; KEGG: pol:Bpro_0581 MmgE/PrpD
YP_984448.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_0582 L-carnitine dehydratase/bile acid-inducible protein F
YP_984449.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bur:Bcep18194_C7297 acyl-CoA dehydrogenase
YP_984450.1	KEGG: pol:Bpro_0584 hypothetical protein
YP_984451.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bja:bll6372 probable short-chain dehydrogenase
YP_984452.1	PFAM: MaoC domain protein dehydratase; KEGG: rme:Rmet_3807 MaoC-like dehydratase
YP_984453.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bbr:BB4711 probable enoyl-CoA hydratase
YP_984454.1	PFAM: acetyl-CoA hydrolase/transferase; KEGG: bpa:BPP0600 acetyl-CoA hydrolase/transferase
YP_984455.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_984456.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3797 uncharacterized protein UPF0065
YP_984457.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_3802 AMP-dependent synthetase and ligase
YP_984458.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3801 uncharacterized protein UPF0065
YP_984459.1	PFAM: protein of unknown function DUF35; KEGG: reu:Reut_B3511 protein of unknown function DUF35
YP_984460.1	KEGG: reu:Reut_B3512 thiolase
YP_984461.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bur:Bcep18194_C7329 acyl-CoA dehydrogenase
YP_984462.1	TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: bam:Bamb_1837 hypothetical protein
YP_984463.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bbr:BB2959 probable transcriptional regulator
YP_984464.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rme:Rmet_3808 L-carnitine dehydratase/bile acid-inducible protein F
YP_984465.1	PFAM: porin, Gram-negative type; KEGG: bcn:Bcen_4125 porin, gram-negative type
YP_984466.1	PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: pol:Bpro_3239 Glu/Leu/Phe/Val dehydrogenase, C terminal
YP_984467.1	PFAM: protein of unknown function DUF344; KEGG: pol:Bpro_4050 protein of unknown function DUF344
YP_984468.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mfa:Mfla_0402 transcriptional regulator, LysR family
YP_984469.1	PFAM: transmembrane pair domain protein; KEGG: bte:BTH_II1937 hypothetical protein
YP_984470.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bam:Bamb_5949 transcriptional regulator, LysR family
YP_984471.1	KEGG: reu:Reut_B4400 mandelate racemase/muconate lactonizing enzyme; TIGRFAM: muconate and chloromuconate cycloisomerases; PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
YP_984472.1	PFAM: Muconolactone delta-isomerase; KEGG: rme:Rmet_4877 muconolactone delta-isomerase
YP_984473.1	PFAM: intradiol ring-cleavage dioxygenase; Catechol dioxygenase, N-terminal domain protein; KEGG: rme:Rmet_1781 catechol 1,2-dioxygenase
YP_984474.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4876 uncharacterized protein UPF0065
YP_984475.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4301 4Fe-4S ferredoxin, iron-sulfur binding
YP_984476.1	KEGG: eba:ebA1198 iron-sulfur subunit of cytochrome bc1; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein
YP_984477.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: bxe:Bxe_B0676 sigma54 specific transcriptional regulator with PAS sensor, fis family
YP_984478.1	KEGG: rfr:Rfer_0466 5-methyltetrahydrofolate--homocysteine methyltransferase; TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase, DHPS; Methionine synthase, B12-binding module, cap domain protein; Vitamin B12 dependent methionine synthase, activation region; cobalamin B12-binding domain protein
YP_984479.1	PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rme:Rmet_3815 peptidoglycan-binding domain 1
YP_984480.1	PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: reu:Reut_B3941 twin-arginine translocation pathway signal
YP_984481.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_984482.1	PFAM: ribonuclease BN; KEGG: pol:Bpro_1517 ribonuclease BN
YP_984483.1	PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_0175 17 kDa surface antigen
YP_984484.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rfr:Rfer_0084 ferredoxin--NADP(+) reductase
YP_984485.1	PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_4064 extracellular ligand-binding receptor
YP_984486.1	PFAM: inner-membrane translocator; KEGG: pol:Bpro_4063 inner-membrane translocator
YP_984487.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4062 ABC transporter related
YP_984488.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4061 ABC transporter related
YP_984489.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0910 transcriptional regulator, LysR family
YP_984490.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rso:RSc1730 probable dehydrogenase/reductase oxidoreductase protein
YP_984491.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rme:Rmet_5612 methyl-accepting chemotaxis sensory transducer
YP_984492.1	KEGG: rfr:Rfer_0471 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_984493.1	KEGG: pol:Bpro_0182 hypothetical protein
YP_984494.1	PFAM: nitrogen regulatory protein P-II; KEGG: rfr:Rfer_0472 nitrogen regulatory protein P-II
YP_984495.1	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: rfr:Rfer_0473 ammonium transporter
YP_984496.1	PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rfr:Rfer_0479 senescence marker protein-30 (SMP-30)
YP_984497.1	PFAM: FAD linked oxidase domain protein; KEGG: rfr:Rfer_0480 FAD linked oxidase-like
YP_984498.1	PFAM: protein of unknown function DUF1275; KEGG: rso:RS00757 probable transmembrane protein
YP_984499.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: pol:Bpro_0188 protein of unknown function DUF224, cysteine-rich region
YP_984500.1	PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: pol:Bpro_1033 hypothetical protein
YP_984501.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bxe:Bxe_A4004 hypothetical protein
YP_984502.1	PFAM: transcription activator, effector binding; KEGG: pfl:PFL_3410 hypothetical protein
YP_984503.1	PFAM: Helix-turn-helix, type 11 domain protein; KEGG: rso:RSc2673 putative repressor transcription regulator protein
YP_984504.1	PFAM: glutathione peroxidase; KEGG: rfr:Rfer_0484 glutathione peroxidase
YP_984505.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_0486 protein of unknown function DUF6, transmembrane
YP_984506.1	PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0192 major facilitator superfamily MFS_1
YP_984507.1	KEGG: pol:Bpro_0193 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein
YP_984508.1	KEGG: bma:BMAA0623 hypothetical protein
YP_984509.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: sme:SMc00036 putative glutathione S-transferase protein
YP_984511.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_984512.1	KEGG: pol:Bpro_0202 hypothetical protein
YP_984513.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_984514.1	KEGG: rfr:Rfer_0507 hypothetical protein
YP_984515.1	PFAM: O-antigen polymerase; KEGG: msu:MS0243 RfaL protein
YP_984516.1	PFAM: glycosyl transferase, group 1; KEGG: sth:STH1101 glycosyl transferase
YP_984517.1	PFAM: glycosyl transferase, family 2; KEGG: sma:SAV5093 glycosyl transferase
YP_984518.1	KEGG: mmr:Mmar10_2764 hypothetical protein
YP_984519.1	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: bcn:Bcen_2830 2-nitropropane dioxygenase, NPD
YP_984520.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pae:PA4203 probable transcriptional regulator
YP_984521.1	PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: pol:Bpro_1488 protein of unknown function DUF1228
YP_984522.1	PFAM: MOSC domain containing protein; KEGG: pae:PA2229 hypothetical protein
YP_984523.1	KEGG: bbr:BB2475 hypothetical protein
YP_984524.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rfr:Rfer_0509 periplasmic sensor signal transduction histidine kinase
YP_984525.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rfr:Rfer_0510 two component transcriptional regulator, winged helix family
YP_984526.1	KEGG: cte:CT1159 type III restriction system methylase
YP_984527.1	KEGG: cch:Cag_1524 DNA-damage-inducible protein D
YP_984528.1	PFAM: Eco57I restriction endonuclease; KEGG: cte:CT1160 type III restriction system endonuclease, putative
YP_984529.1	KEGG: dge:Dgeo_0923 type III restriction system endonuclease, putative
YP_984530.1	PFAM: major facilitator superfamily MFS_1; KEGG: rfr:Rfer_0516 major facilitator superfamily MFS_1
YP_984531.1	PFAM: Cupin 2, conserved barrel domain protein; SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: pol:Bpro_0312 transcriptional regulator, AraC family
YP_984532.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rsp:RSP_3308 possible transporter, DME family, DMT superfamily
YP_984533.1	KEGG: reu:Reut_A2446 probable signal peptide protein
YP_984534.1	PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_0210 peptidase M48, Ste24p
YP_984535.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bur:Bcep18194_B2973 transcriptional regulator, GntR family
YP_984536.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; 4-vinyl reductase, 4VR; Activator of aromatic catabolism; SMART: AAA ATPase; KEGG: bur:Bcep18194_B2972 sigma54 specific transcriptional regulator with PAS sensor, fis family
YP_984537.1	PFAM: Phenol hydroxylase subunit; KEGG: dar:Daro_3797 phenol hydroxylase subunit
YP_984538.1	PFAM: methane/phenol/toluene hydroxylase; KEGG: reu:Reut_B5681 methane/phenol/toluene hydroxylase
YP_984539.1	PFAM: monooxygenase component MmoB/DmpM; KEGG: reu:Reut_B5682 monooxygenase component MmoB/DmpM
YP_984540.1	PFAM: methane/phenol/toluene hydroxylase; YHS domain protein; KEGG: reu:Reut_B5683 methane/phenol/toluene hydroxylase:YHS
YP_984541.1	PFAM: Phenol hydroxylase conserved region; KEGG: rme:Rmet_1327 phenol hydroxylase conserved region
YP_984542.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: reu:Reut_B5685 ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region
YP_984543.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: dar:Daro_3799 regulatory protein, LysR:LysR, substrate-binding
YP_984544.1	PFAM: ferredoxin; KEGG: reu:Reut_B5686 ferredoxin
YP_984545.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_B5687 catechol 2,3-dioxygenase
YP_984546.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: dar:Daro_3799 regulatory protein, LysR:LysR, substrate-binding
YP_984547.1	PFAM: ferredoxin; KEGG: dar:Daro_3791 ferredoxin
YP_984548.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dar:Daro_3789 glyoxalase/bleomycin resistance protein/dioxygenase
YP_984549.1	PFAM: protein of unknown function DUF336; KEGG: reu:Reut_B5688 protein of unknown function DUF336
YP_984550.1	PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_B5689 betaine-aldehyde dehydrogenase
YP_984551.1	PFAM: alpha/beta hydrolase fold; KEGG: dar:Daro_1331 alpha/beta hydrolase fold
YP_984552.1	PFAM: Hydratase/decarboxylase; KEGG: dar:Daro_3785 hydratase/decarboxylase
YP_984553.1	catalyzes the formation of acetyl-CoA from acetalaldehyde
YP_984554.1	catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate
YP_984555.1	PFAM: Hydratase/decarboxylase; KEGG: rme:Rmet_1318 hydratase/decarboxylase
YP_984556.1	PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1999 hypothetical protein
YP_984557.1	TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; KEGG: reu:Reut_B5693 4-oxalocrotonate tautomerase
YP_984558.1	PFAM: beta-lactamase domain protein; KEGG: rfr:Rfer_0167 beta-lactamase-like
YP_984559.1	PFAM: regulatory protein GntR, HTH; KEGG: reu:Reut_B4629 regulatory protein GntR, HTH
YP_984560.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pau:PA14_35970 probable acyl-CoA dehydrogenase
YP_984561.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: ppu:PP_2794 oxidoreductase, short chain dehydrogenase/reductase family
YP_984562.1	PFAM: aminoglycoside phosphotransferase; KEGG: reu:Reut_A1007 aminoglycoside phosphotransferase
YP_984563.1	KEGG: rfr:Rfer_3929 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase
YP_984564.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_984565.1	KEGG: pol:Bpro_0218 hypothetical protein
YP_984566.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB/Yqey domain protein; GatB N-terminal region; GatB, central domain protein; KEGG: rfr:Rfer_3926 glutamyl-tRNA(Gln) amidotransferase, B subunit
YP_984567.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_984568.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; KEGG: rfr:Rfer_3924 glutamyl-tRNA(Gln) amidotransferase, C subunit
YP_984569.1	functions in MreBCD complex in some organisms
YP_984570.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_984571.1	KEGG: pol:Bpro_0224 putative rod shape-determining MreD transmembrane protein
YP_984572.1	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: pol:Bpro_0225 peptidoglycan glycosyltransferase
YP_984573.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: dra:DR2393 hypothetical protein
YP_984574.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0403 ABC transporter related
YP_984575.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0402 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_984576.1	PFAM: extracellular solute-binding protein, family 3; KEGG: pol:Bpro_0401 extracellular solute-binding protein, family 3
YP_984577.1	TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rfr:Rfer_3884 arginase
YP_984578.1	PFAM: protein of unknown function DUF81; KEGG: rfr:Rfer_3919 protein of unknown function DUF81
YP_984579.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rfr:Rfer_3918 glucose-methanol-choline oxidoreductase
YP_984580.1	PFAM: protein of unknown function DUF140; KEGG: pol:Bpro_0230 protein of unknown function DUF140
YP_984581.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0231 ABC transporter related
YP_984582.1	PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_0232 mammalian cell entry related
YP_984583.1	KEGG: pol:Bpro_0233 putative lipoprotein
YP_984584.1	PFAM: CsbD family protein; KEGG: pol:Bpro_1152 CsbD-like
YP_984585.1	KEGG: pol:Bpro_1153 hypothetical protein
YP_984586.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: reu:Reut_A0820 hypothetical protein
YP_984587.1	KEGG: bxe:Bxe_B2063 putative diguanylate cyclase (GGDEF domain); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_984588.1	PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: pol:Bpro_0238 multiple antibiotic resistance (MarC)-related proteins
YP_984589.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_0239 short-chain dehydrogenase/reductase SDR
YP_984590.1	PFAM: dienelactone hydrolase; KEGG: pol:Bpro_0241 carboxymethylenebutenolidase
YP_984591.1	TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3234 drug resistance transporter EmrB/QacA subfamily
YP_984592.1	PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_3235 secretion protein HlyD
YP_984593.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_3236 RND efflux system, outer membrane lipoprotein, NodT
YP_984594.1	PFAM: regulatory protein, MarR; KEGG: rfr:Rfer_1513 transcriptional regulator, MarR family
YP_984595.1	PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pol:Bpro_0244 Mg2+ transporter protein, CorA-like
YP_984596.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_984597.1	PFAM: biotin/lipoate A/B protein ligase; KEGG: rfr:Rfer_3968 biotin/lipoate A/B protein ligase
YP_984598.1	PFAM: conserved hypothetical protein 701; KEGG: rfr:Rfer_3804 conserved hypothetical protein 701
YP_984599.1	PFAM: VanZ family protein; KEGG: rfr:Rfer_3803 VanZ like protein
YP_984600.1	KEGG: pol:Bpro_0248 ferredoxin-like
YP_984601.1	KEGG: pol:Bpro_0249 putative transmembrane protein
YP_984602.1	PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: rfr:Rfer_3801 serine-type D-Ala-D-Ala carboxypeptidase
YP_984603.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_984604.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_984605.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_984606.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_984607.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_984608.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_984609.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_984610.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_984611.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_984612.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_984613.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_984614.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_984615.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_984616.1	one of the stabilizing components for the large ribosomal subunit
YP_984617.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_984618.1	PFAM: Redoxin domain protein; KEGG: rfr:Rfer_3785 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_984619.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_3784 GCN5-related N-acetyltransferase
YP_984620.1	PFAM: cytochrome B561; KEGG: pol:Bpro_0268 cytochrome b561
YP_984621.1	PFAM: cytochrome c, class II; KEGG: pol:Bpro_0269 cytochrome c, class II
YP_984622.1	PFAM: Redoxin domain protein; KEGG: pol:Bpro_0270 putative transmembrane protein
YP_984623.1	KEGG: pol:Bpro_0295 hypothetical protein
YP_984624.1	PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0296 major facilitator superfamily MFS_1
YP_984625.1	PFAM: PTS system fructose subfamily IIA component; KEGG: pol:Bpro_0297 PTS system fructose subfamily IIA component
YP_984626.1	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: pol:Bpro_0298 HPrNtr
YP_984627.1	TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: pol:Bpro_0299 phosphoenolpyruvate-protein phosphotransferase
YP_984628.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_984629.1	lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein
YP_984630.1	PFAM: protein of unknown function DUF493; KEGG: pol:Bpro_0316 protein of unknown function DUF493
YP_984631.1	KEGG: rfr:Rfer_0113 putative ATP synthase protein I
YP_984632.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_984633.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_984634.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_984635.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_984636.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_984637.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_984638.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_984639.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_984640.1	KEGG: ppu:PP_1106 putative mRNA 3-end processing factor
YP_984641.1	catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA
YP_984642.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like; KEGG: reu:Reut_A1853 helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
YP_984643.1	PFAM: metallophosphoesterase; KEGG: reu:Reut_A1852 hypothetical protein
YP_984644.1	PFAM: protein of unknown function DUF477; KEGG: pol:Bpro_0329 protein of unknown function DUF477
YP_984645.1	PFAM: protein of unknown function DUF477; KEGG: rfr:Rfer_0103 protein of unknown function DUF477
YP_984646.1	PFAM: LemA family protein; KEGG: rfr:Rfer_0102 LemA
YP_984647.1	KEGG: pol:Bpro_0333 hypothetical protein
YP_984648.1	KEGG: rpe:RPE_0805 alpha/beta hydrolase fold
YP_984649.1	KEGG: rfr:Rfer_0100 hypothetical protein
YP_984650.1	PFAM: cytochrome c, class I; KEGG: rfr:Rfer_0208 cytochrome c, class I
YP_984651.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_2037 RND efflux system, outer membrane lipoprotein, NodT
YP_984652.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_2066 secretion protein HlyD
YP_984653.1	PFAM: regulatory protein, TetR; Tetracycline transcriptional repressor MAATS-type, C-terminal domain protein; KEGG: pol:Bpro_2034 transcriptional regulator, TetR family
YP_984654.1	PFAM: regulatory proteins, IclR; KEGG: mfa:Mfla_2558 transcriptional regulator, IclR family
YP_984655.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase
YP_984656.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mfa:Mfla_2557 secretion protein HlyD
YP_984657.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: pau:PA14_05540 RND multidrug efflux transporter MexB
YP_984658.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pfl:PFL_2142 outer membrane efflux protein
YP_984659.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_B1631 HAD-superfamily hydrolase, subfamily IA, variant3
YP_984660.1	KEGG: pol:Bpro_1739 hypothetical protein
YP_984662.1	PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: mfa:Mfla_1441 alcohol dehydrogenase GroES-like protein
YP_984663.1	KEGG: reu:Reut_B4919 putative outer membrane protein
YP_984664.1	PFAM: glutamine amidotransferase, class-II; KEGG: pol:Bpro_4539 glutamine amidotransferase, class-II
YP_984665.1	4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown
YP_984666.1	KEGG: psb:Psyr_3980 hypothetical protein
YP_984667.1	catalyzes the formation of malate from glyoxylate and acetyl-CoA
YP_984668.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4493 transcriptional regulator, LysR family
YP_984669.1	KEGG: xoo:XOO0695 hypothetical protein
YP_984670.1	KEGG: reu:Reut_A0848 probable transmembrane protein
YP_984671.1	PFAM: PsiF repeat protein; KEGG: pau:PA14_64460 putative phosphate starvation-inducible protein
YP_984672.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_984673.1	PFAM: Sporulation domain protein; KEGG: rfr:Rfer_0774 sporulation related
YP_984674.1	PFAM: DSBA oxidoreductase; KEGG: pol:Bpro_4488 DsbA oxidoreductase
YP_984675.1	PFAM: OstA family protein; KEGG: rfr:Rfer_0776 OstA-like protein
YP_984676.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_0777 ABC transporter related
YP_984677.1	TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: rfr:Rfer_0778 sigma-54 (RpoN)
YP_984678.1	KEGG: dar:Daro_1883 hypothetical protein
YP_984679.1	PFAM: putative RNA methylase; THUMP domain protein; KEGG: pol:Bpro_4484 putative RNA methylase
YP_984680.1	KEGG: pol:Bpro_4483 protein of unknown function DUF132
YP_984681.1	PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: bbr:BB1554 putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase
YP_984682.1	PFAM: SEC-C motif domain protein; KEGG: reu:Reut_B5710 sec-C motif
YP_984683.1	PFAM: CinA domain protein; KEGG: pol:Bpro_4476 CinA-like
YP_984684.1	PFAM: phosphatidylglycerophosphatase A; KEGG: pol:Bpro_4475 phosphatidylglycerophosphatase A
YP_984685.1	KEGG: pol:Bpro_4471 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein
YP_984686.1	ATP-dependent; carboxylate-amine ligase with weak glutamate--cysteine ligase activity
YP_984687.1	PFAM: sodium/hydrogen exchanger; KEGG: pol:Bpro_4469 sodium/hydrogen exchanger
YP_984688.1	KEGG: rfr:Rfer_0530 putative site-specific recombinase transmembrane protein
YP_984689.1	protein associated with Co2+ and Mg2+ efflux
YP_984690.1	PFAM: ribulose-phosphate 3-epimerase; KEGG: rfr:Rfer_0532 ribulose-phosphate 3-epimerase
YP_984691.1	KEGG: rfr:Rfer_1966 hypothetical protein
YP_984692.1	KEGG: rfr:Rfer_3611 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase
YP_984693.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2225 methyl-accepting chemotaxis sensory transducer
YP_984694.1	KEGG: pol:Bpro_4459 putative lipoprotein transmembrane
YP_984695.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_984696.1	PFAM: Chorismate mutase; KEGG: pol:Bpro_4456 chorismate mutase
YP_984697.1	TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity
YP_984698.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_984699.1	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water
YP_984700.1	KEGG: rfr:Rfer_3606 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_984701.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_984702.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_1004 putative transmembrane protein
YP_984703.1	TIGRFAM: S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: rfr:Rfer_0628 S-adenosylmethionine
YP_984704.1	catalyzes branch migration in Holliday junction intermediates
YP_984705.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_3681 transcriptional regulator, LysR family
YP_984706.1	PFAM: Ferritin, Dps family protein; KEGG: bbr:BB2935 putative DNA-binding protein
YP_984707.1	PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: rfr:Rfer_2024 adenylate cyclase
YP_984708.1	TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; KEGG: pol:Bpro_0474 4-hydroxybenzoate polyprenyl transferase
YP_984709.1	KEGG: pol:Bpro_0475 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent
YP_984710.1	TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: pol:Bpro_0476 glycerol kinase
YP_984711.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: pol:Bpro_0477 transcriptional regulator, DeoR family
YP_984712.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_0478 ABC transporter related
YP_984713.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_0479 ABC transporter related
YP_984714.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_3674 binding-protein-dependent transport systems inner membrane component
YP_984715.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0481 binding-protein-dependent transport systems inner membrane component
YP_984716.1	KEGG: rfr:Rfer_3672 putative integral membrane protein
YP_984717.1	PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_0483 twin-arginine translocation pathway signal
YP_984718.1	PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_0484 FAD dependent oxidoreductase
YP_984719.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_984720.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_984721.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_984722.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif
YP_984723.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_984724.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_984725.1	binds 5S rRNA along with protein L5 and L25
YP_984726.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_984727.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_984728.1	late assembly protein
YP_984729.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_984730.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_984731.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_984732.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_984733.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_984734.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_984735.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_984736.1	PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: xcb:XC_2733 UDP-glucose dehydrogenase
YP_984737.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: eba:ebA1639 predicted nucleoside-diphosphate-sugar epimerase
YP_984738.1	KEGG: sme:SMc02383 hypothetical protein
YP_984739.1	PFAM: glycosyl transferase, family 2; KEGG: ana:alr3380 dolichol-phosphate mannosyltransferase
YP_984740.1	KEGG: gvi:gll0941 hypothetical protein
YP_984741.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rfr:Rfer_3872 protein of unknown function UPF0011
YP_984742.1	PFAM: protein of unknown function UPF0102; KEGG: rfr:Rfer_3873 protein of unknown function UPF0102
YP_984743.1	KEGG: pol:Bpro_0392 phosphoheptose isomerase
YP_984744.1	PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: rfr:Rfer_3875 transport-associated
YP_984745.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: rfr:Rfer_3876 6-phosphogluconate dehydrogenase, NAD-binding
YP_984746.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_0395 twitching motility protein
YP_984747.1	PFAM: cyclic nucleotide-binding; KEGG: psp:PSPPH_1557 cyclic nucleotide-binding protein
YP_984748.1	KEGG: pol:Bpro_0396 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase
YP_984749.1	PFAM: alanine racemase domain protein; KEGG: pol:Bpro_0397 protein of unknown function UPF0001
YP_984750.1	PFAM: aminotransferase, class V; aminotransferase class-III; KEGG: rfr:Rfer_3691 aminotransferase, class V
YP_984751.1	PFAM: protein of unknown function DUF445; KEGG: bxe:Bxe_B1234 hypothetical protein
YP_984752.1	KEGG: bbr:BB3068 hypothetical protein
YP_984753.1	PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_0433 FAD linked oxidase-like
YP_984754.1	PFAM: MT-A70 family protein; KEGG: nmu:Nmul_A2608 MT-A70
YP_984755.1	KEGG: rde:RD1_1080 hypothetical protein
YP_984756.1	produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine
YP_984757.1	KEGG: pol:Bpro_0441 hypothetical protein
YP_984758.1	TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit, N terminal domain protein; KEGG: bte:BTH_II1936 ribonucleotide reductase system
YP_984759.1	PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: pol:Bpro_4599 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ
YP_984760.1	PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_1869 two component transcriptional regulator, LuxR family
YP_984761.1	PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4597 major facilitator superfamily MFS_1
YP_984762.1	TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: gme:Gmet_0334 nitrate transporter
YP_984763.1	TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: rfr:Rfer_2792 nitrate reductase, alpha subunit
YP_984764.1	KEGG: pol:Bpro_4594 nitrate reductase, beta subunit; TIGRFAM: nitrate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein
YP_984765.1	TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: pol:Bpro_4593 nitrate reductase molybdenum cofactor assembly chaperone
YP_984766.1	TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: rfr:Rfer_2795 respiratory nitrate reductase, gamma subunit
YP_984767.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rfr:Rfer_2796 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_984768.1	PFAM: carbonic anhydrase; KEGG: pol:Bpro_4590 carbonate dehydratase
YP_984769.1	PFAM: NnrS family protein; KEGG: rfr:Rfer_4151 NnrS
YP_984770.1	PFAM: nitroreductase; KEGG: pol:Bpro_4587 nitroreductase
YP_984771.1	KEGG: rfr:Rfer_2344 hypothetical protein
YP_984772.1	PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pol:Bpro_4585 hypothetical protein
YP_984773.1	KEGG: pol:Bpro_0443 hypothetical protein
YP_984774.1	KEGG: pol:Bpro_0444 hypothetical protein
YP_984775.1	PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_0445 transcriptional regulator, IclR family
YP_984776.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: pol:Bpro_0446 fumarylacetoacetate (FAA) hydrolase
YP_984777.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A0112 hypothetical protein
YP_984778.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pol:Bpro_4032 molybdopterin oxidoreductase
YP_984779.1	PFAM: Extracellular ligand-binding receptor; KEGG: rso:RSc2864 probable LEU/ILE/VAL-binding signal peptide protein
YP_984780.1	KEGG: pol:Bpro_2111 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_984781.1	KEGG: pol:Bpro_2110 hypothetical protein
YP_984782.1	PFAM: acyl-coA-binding protein, ACBP; KEGG: rfr:Rfer_3532 acyl-coA-binding protein, ACBP
YP_984783.1	KEGG: pol:Bpro_4033 putative zinc protease protein
YP_984784.1	PFAM: methyladenine glycosylase; KEGG: pol:Bpro_3540 DNA-3-methyladenine glycosylase I
YP_984785.1	KEGG: eca:ECA2796 hypothetical protein
YP_984786.1	KEGG: rfr:Rfer_0521 hypothetical protein
YP_984787.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_3190 cyclopropane-fatty-acyl-phospholipid synthase
YP_984788.1	KEGG: rfr:Rfer_3535 hypothetical protein
YP_984789.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0596 uncharacterized protein UPF0065
YP_984790.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0597 uncharacterized protein UPF0065
YP_984791.1	KEGG: pol:Bpro_0598 putative phenylacetate-CoA ligase
YP_984792.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0599 ABC transporter related
YP_984793.1	KEGG: rfr:Rfer_3538 hypothetical protein
YP_984794.1	PFAM: inner-membrane translocator; KEGG: pol:Bpro_0601 inner-membrane translocator
YP_984795.1	PFAM: inner-membrane translocator; KEGG: pol:Bpro_0602 inner-membrane translocator
YP_984796.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3541 ABC transporter related
YP_984797.1	PFAM: AMP-dependent synthetase and ligase; KEGG: dar:Daro_0249 AMP-dependent synthetase and ligase
YP_984798.1	PFAM: Peptidoglycan-binding domain 1 protein; SMART: AAA ATPase; KEGG: pol:Bpro_2822 peptidoglycan-binding domain 1
YP_984799.1	KEGG: rfr:Rfer_0082 hypothetical protein
YP_984800.1	PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: pol:Bpro_0605 transcriptional regulator, Crp/Fnr family
YP_984801.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pol:Bpro_0606 pseudouridine synthase, Rsu
YP_984802.1	molecular chaperone
YP_984803.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4856 hypothetical protein
YP_984804.1	KEGG: sru:SRU_0623 hypothetical protein
YP_984806.1	catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages
YP_984807.1	PFAM: protein kinase; UspA domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: ade:Adeh_3699 serine/threonine protein kinase
YP_984808.1	PFAM: metallophosphoesterase; KEGG: ade:Adeh_3700 metallophosphoesterase
YP_984809.1	PFAM: OsmC family protein; KEGG: pfo:Pfl_2206 OsmC-like protein
YP_984810.1	PFAM: regulatory protein, MarR; KEGG: pol:Bpro_0623 transcriptional regulator, MarR family
YP_984811.1	TIGRFAM: CRISPR-associated protein, Csy4 family; KEGG: eca:ECA3684 hypothetical protein
YP_984812.1	TIGRFAM: CRISPR-associated protein, Csy3 family; KEGG: cvi:CV1752 hypothetical protein
YP_984813.1	TIGRFAM: CRISPR-associated protein, Csy2 family; KEGG: cvi:CV1753 hypothetical protein
YP_984814.1	TIGRFAM: CRISPR-associated protein, Csy1 family; KEGG: cvi:CV1754 hypothetical protein
YP_984815.1	TIGRFAM: CRISPR-associated helicase Cas3 family; KEGG: cvi:CV1755 hypothetical protein
YP_984816.1	TIGRFAM: CRISPR-associated protein Cas1; KEGG: cvi:CV1756 hypothetical protein
YP_984817.1	PFAM: alanine racemase domain protein; KEGG: pol:Bpro_4092 putative threonine aldolase
YP_984818.1	PFAM: Phosphoglycerate mutase; KEGG: rfr:Rfer_0816 phosphoglycerate mutase
YP_984819.1	KEGG: nmu:Nmul_A2600 hypothetical protein
YP_984820.1	KEGG: pol:Bpro_4090 hypothetical protein
YP_984821.1	TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs
YP_984822.1	PFAM: dihydroneopterin aldolase; KEGG: pol:Bpro_4088 dihydroneopterin aldolase
YP_984823.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_4087 short-chain dehydrogenase/reductase SDR
YP_984824.1	PFAM: protein of unknown function DUF185; KEGG: pol:Bpro_4086 protein of unknown function DUF185
YP_984825.1	KEGG: rfr:Rfer_0811 hypothetical protein
YP_984826.1	PFAM: ROK family protein; KEGG: pol:Bpro_4084 hypothetical protein
YP_984827.1	KEGG: reu:Reut_A0416 glycosyl transferase, family 20; TIGRFAM: alpha,alpha-trehalose-phosphate synthase [UDP-forming]; PFAM: glycosyl transferase, family 20
YP_984828.1	PFAM: glycoside hydrolase 15-related; KEGG: reu:Reut_A0415 glycoside hydrolase 15-related
YP_984829.1	KEGG: pol:Bpro_3915 HAD-superfamily hydrolase subfamily IIB; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase
YP_984830.1	TIGRFAM: thioredoxin; MJ0042 family finger-like protein; PFAM: Thioredoxin domain; KEGG: pol:Bpro_3369 thioredoxin
YP_984831.1	PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: rfr:Rfer_1090 metal dependent phosphohydrolase
YP_984832.1	PFAM: metallophosphoesterase; KEGG: rfr:Rfer_4142 metallophosphoesterase
YP_984833.1	PFAM: Glutathione S-transferase, N-terminal domain; KEGG: rfr:Rfer_1089 glutathione S-transferase-like
YP_984834.1	PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: rfr:Rfer_1087 5-formyltetrahydrofolate cyclo-ligase
YP_984835.1	PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_0652 lytic transglycosylase, catalytic
YP_984836.1	PFAM: cytochrome B561; KEGG: rsp:RSP_2807 putative cytochrome b
YP_984837.1	KEGG: rso:RSc2353 probable signal peptide protein
YP_984838.1	PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: pat:Patl_2273 2OG-Fe(II) oxygenase
YP_984839.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pat:Patl_2274 (S)-2-hydroxy-acid oxidase
YP_984840.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pat:Patl_2275 TonB-dependent receptor
YP_984841.1	PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_4226 beta-lactamase-like
YP_984842.1	PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_4225 AMP-dependent synthetase and ligase
YP_984843.1	PFAM: PGAP1 family protein; KEGG: pol:Bpro_4221 putative lipase transmembrane protein
YP_984844.1	phenylalanine 4-hydroxylase; phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin
YP_984845.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3791 uncharacterized protein UPF0065
YP_984846.1	KEGG: reu:Reut_B4501 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_984847.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_4212 transcriptional regulator, AsnC family
YP_984848.1	PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_4211 GCN5-related N-acetyltransferase
YP_984849.1	PFAM: CBS domain containing protein; transporter-associated region; KEGG: rfr:Rfer_3698 CBS
YP_984850.1	Transfers the fatty acyl group on membrane lipoproteins
YP_984851.1	catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP
YP_984852.1	PFAM: beta-ketoacyl synthase; KEGG: pen:PSEEN3623 beta-ketoacyl-ACP synthase I (3-oxoacyl-[acyl-carrier-protein] synthase I)
YP_984853.1	glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
YP_984854.1	KEGG: pol:Bpro_4202 glycine--tRNA ligase
YP_984855.1	TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: pol:Bpro_4201 histidinol-phosphate phosphatase
YP_984856.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: pol:Bpro_4200 phospholipid/glycerol acyltransferase
YP_984857.1	PFAM: protein of unknown function DUF45; KEGG: pol:Bpro_4199 protein of unknown function DUF45
YP_984858.1	SMART: Rhodanese domain protein; KEGG: rfr:Rfer_3613 rhodanese-like
YP_984859.1	PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: eba:ebA3069 conserved hypothetical protein, probably involved in cell wall turnover
YP_984860.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_984861.1	PFAM: regulatory protein, TetR; KEGG: rfr:Rfer_3529 transcriptional regulator, TetR family
YP_984862.1	TIGRFAM: poly(hydroxyalkanoate) granule-associated protein; PFAM: poly granule associated family protein; KEGG: pol:Bpro_4024 poly granule associated
YP_984863.1	TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_4022 dTDP-glucose 4,6-dehydratase
YP_984864.1	PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_4021 dTDP-4-dehydrorhamnose reductase
YP_984865.1	TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pol:Bpro_4018 glucose-1-phosphate thymidylyltransferase
YP_984866.1	KEGG: rme:Rmet_2732 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related
YP_984867.1	TIGRFAM: rhamnosyltransferase; PFAM: glycosyl transferase, family 2; KEGG: noc:Noc_2177 rhamnosyltransferase
YP_984868.1	PFAM: glycosyl transferase, family 2; KEGG: xac:XAC3598 truncated O-antigen biosynthesis protein
YP_984869.1	KEGG: nar:Saro_3231 hypothetical protein
YP_984870.1	PFAM: ABC-2 type transporter; KEGG: bur:Bcep18194_A3980 ABC polysaccharide/polyol phosphate export pump, inner membrane subunit
YP_984871.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mes:Meso_3694 ABC transporter related
YP_984872.1	KEGG: fal:FRAAL5663 hypothetical protein; putative acetyltransferases (isoleucine patch superfamily)
YP_984873.1	KEGG: nfa:nfa2110 hypothetical protein
YP_984874.1	PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase
YP_984875.1	PFAM: glycosyl transferase, family 2; KEGG: zmo:ZMO0947 hypothetical protein
YP_984876.1	PFAM: GtrA family protein; KEGG: ret:RHE_CH00273 hypothetical conserved membrane protein
YP_984877.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bth:BT3376 nucleotide sugar transaminase
YP_984878.1	PFAM: TonB-dependent receptor, plug; KEGG: rfr:Rfer_2036 TonB-dependent receptor
YP_984879.1	KEGG: rfr:Rfer_2037 hypothetical protein
YP_984880.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rfr:Rfer_2038 periplasmic sensor hybrid histidine kinase
YP_984881.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: mes:Meso_0341 two component transcriptional regulator, LuxR family
YP_984882.1	PFAM: glycosyl transferase, family 2; KEGG: pfo:Pfl_4042 glycosyl transferase, family 2
YP_984883.1	PFAM: acyltransferase 3; KEGG: rru:Rru_A2715 acyltransferase 3
YP_984884.1	KEGG: ava:Ava_4160 VCBS
YP_984885.1	PFAM: glycosyl transferase, group 1; KEGG: syf:Synpcc7942_1625 probable glycosyltransferase
YP_984887.1	KEGG: ccr:CC3052 hypothetical protein
YP_984888.1	PFAM: protein of unknown function DUF1568; KEGG: eba:ebA1554 hypothetical transposase
YP_984890.1	KEGG: bcn:Bcen_2656 hypothetical protein
YP_984892.1	KEGG: tdn:Tmden_1855 DNA (cytosine-5-)-methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase
YP_984893.1	KEGG: nmu:Nmul_A0918 hypothetical protein
YP_984894.1	KEGG: nmu:Nmul_A0917 hypothetical protein
YP_984895.1	KEGG: wol:WD0572 hypothetical protein
YP_984896.1	PFAM: transposase IS3/IS911 family protein; KEGG: pst:PSPTO_5581 hypothetical protein
YP_984897.1	PFAM: IS66 Orf2 family protein; KEGG: psb:Psyr_0746 IS66 Orf2 like
YP_984898.1	PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66
YP_984899.1	PFAM: transposase, IS4 family protein; KEGG: pol:Bpro_2203 ISRSO17-transposase protein
YP_984900.1	PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase
YP_984901.1	PFAM: glycosyl transferase, group 1; KEGG: cch:Cag_0447 hypothetical protein
YP_984902.1	KEGG: ccr:CC3052 hypothetical protein
YP_984903.1	PFAM: SapC family protein; KEGG: eba:ebA1573 SapC family protein
YP_984904.1	KEGG: noc:Noc_2211 transposase, IS605 OrfB
YP_984905.1	KEGG: cch:Cag_0740 type I secretion system ATPase, PrtD; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_984906.1	KEGG: ppu:PP_2560 transport protein HasD, putative; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase
YP_984907.1	TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: mfa:Mfla_1346 type I secretion membrane fusion protein, HlyD
YP_984908.1	TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dar:Daro_3926 type I secretion outer membrane protein, TolC
YP_984909.1	PFAM: glycosyl transferase, group 1; KEGG: sfr:Sfri_2826 glycosyl transferase, group 1
YP_984910.1	PFAM: glycosyl transferase, family 4; KEGG: pol:Bpro_3998 glycosyl transferase, family 4
YP_984911.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_984912.1	FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly
YP_984913.1	PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein
YP_984914.1	PFAM: regulatory protein, TetR; KEGG: pol:Bpro_3958 transcriptional regulator, TetR family
YP_984915.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3957 acyl-CoA dehydrogenase-like
YP_984916.1	KEGG: rfr:Rfer_3518 hypothetical protein
YP_984917.1	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: rfr:Rfer_3517 3-hydroxyacyl-CoA dehydrogenase, NAD-binding
YP_984918.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_984919.1	KEGG: pau:PA14_40820 putative hydrolase
YP_984920.1	KEGG: pol:Bpro_3933 hypothetical protein
YP_984921.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_984922.1	TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_3505 phenylacetic acid degradation-related protein
YP_984923.1	PFAM: protein of unknown function DUF583; KEGG: rfr:Rfer_3896 protein of unknown function DUF583
YP_984924.1	PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_3907 thioesterase superfamily
YP_984925.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3906 ABC transporter related
YP_984926.1	PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: rfr:Rfer_3445 hypothetical protein
YP_984927.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rme:Rmet_1150 TRAP dicarboxylate transporter, DctP subunit
YP_984928.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rme:Rmet_1149 TRAP dicarboxylate transporter-DctM subunit
YP_984929.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rme:Rmet_1148 tripartite ATP-independent periplasmic transporter, DctQ component
YP_984930.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3905 transcriptional regulator, LysR family
YP_984931.1	PFAM: extracellular solute-binding protein, family 3; KEGG: reu:Reut_A2361 extracellular solute-binding protein, family 3
YP_984932.1	PFAM: extracellular solute-binding protein, family 3; KEGG: pol:Bpro_3904 extracellular solute-binding protein, family 3
YP_984933.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3903 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_984934.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_3902 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_984935.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3901 ABC transporter related
YP_984936.1	catalyzes the formation of L-proline from L-ornithine
YP_984937.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: reu:Reut_A2673 helix-turn-helix, fis-type
YP_984938.1	PFAM: cytochrome c, class I; KEGG: dar:Daro_3327 cytochrome c, class I
YP_984939.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: rfr:Rfer_0644 HAD-superfamily hydrolase subfamily IIB
YP_984940.1	stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein
YP_984941.1	catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine
YP_984942.1	PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pol:Bpro_4131 ribosomal RNA methyltransferase RrmJ/FtsJ
YP_984943.1	TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; KEGG: pol:Bpro_4130 5,10-methylenetetrahydrofolate reductase
YP_984945.1	TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; KEGG: pol:Bpro_4129 rare lipoprotein A
YP_984946.1	PFAM: protein of unknown function DUF519; KEGG: rfr:Rfer_0720 protein of unknown function DUF519
YP_984947.1	PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: bte:BTH_II0256 serine/threonine protein kinase
YP_984948.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_984949.1	forms a direct contact with the tRNA during translation
YP_984950.1	PFAM: protein of unknown function DUF583; KEGG: pol:Bpro_4110 protein of unknown function DUF583
YP_984951.1	essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors
YP_984952.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_984953.1	PFAM: peptidase M23B; KEGG: pol:Bpro_4107 peptidase M23B
YP_984954.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_984955.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: shm:Shewmr7_0766 methyl-accepting chemotaxis sensory transducer
YP_984956.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_1086 transcriptional regulator, LysR family
YP_984957.1	KEGG: rfr:Rfer_1085 hypothetical protein
YP_984958.1	KEGG: pol:Bpro_0671 UDP-N-acetylglucosamine pyrophosphorylase; TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase
YP_984959.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: dge:Dgeo_2525 multi-sensor signal transduction histidine kinase
YP_984960.1	KEGG: csa:Csal_1427 transcriptional regulatory protein, MerR family
YP_984961.1	PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: eba:ebA2728 curved DNA-binding protein
YP_984962.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: mxa:MXAN_0502 transcriptional regulator, AsnC family
YP_984963.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_984964.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; KEGG: cvi:CV0714 hypothetical protein
YP_984965.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cvi:CV0715 transcriptional regulator PtxR
YP_984966.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: eca:ECA3950 putative zinc-binding dehydrogenase
YP_984967.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_984968.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; CHASE3 domain protein; KEGG: mes:Meso_1942 multi-sensor hybrid histidine kinase
YP_984969.1	PFAM: MCP methyltransferase, CheR-type; KEGG: xcb:XC_3058 chemotaxis protein
YP_984970.1	PFAM: CheB methylesterase; KEGG: xac:XAC1280 protein-glutamate methylesterase
YP_984971.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: xcb:XC_3060 two-component system regulatory protein
YP_984972.1	PFAM: response regulator receiver; KEGG: syw:SYNW0947 two-component response regulator, phosphate
YP_984973.1	PFAM: 2OG-Fe(II) oxygenase; KEGG: rso:RSc2568 probable alkylated DNA repair protein
YP_984974.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_3284 AMP-dependent synthetase and ligase
YP_984975.1	PFAM: DSBA oxidoreductase; KEGG: rfr:Rfer_0115 DsbA oxidoreductase
YP_984976.1	PFAM: CreA family protein; KEGG: rme:Rmet_4747 CreA
YP_984977.1	catalyze the formation of cyanophycin which may act to store excess nitrogen
YP_984978.1	catalyze the formation of cyanophycin which may act to store excess nitrogen
YP_984979.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1417 ABC transporter related
YP_984980.1	KEGG: pol:Bpro_1418 hypothetical protein
YP_984981.1	KEGG: rfr:Rfer_0823 hypothetical protein
YP_984982.1	PFAM: Calcium-binding EF-hand-containing protein; KEGG: rso:RSc3104 putative calcium binding signal peptide protein
YP_984983.1	PFAM: 5-nucleotidase; KEGG: rfr:Rfer_0734 5-nucleotidase
YP_984984.1	TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: pol:Bpro_1331 general secretion pathway protein F
YP_984985.1	PFAM: luciferase family protein; KEGG: dar:Daro_1097 luciferase-like
YP_984987.1	KEGG: pol:Bpro_1330 type II secretion system protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase
YP_984988.1	TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: rfr:Rfer_0542 type II and III secretion system protein
YP_984989.1	KEGG: rfr:Rfer_0541 putative general secretory pathway N transmembrane protein
YP_984990.1	KEGG: pol:Bpro_1327 hypothetical protein
YP_984991.1	PFAM: General secretion pathway L; KEGG: pol:Bpro_1326 hypothetical protein
YP_984992.1	PFAM: General secretion pathway protein K; KEGG: pol:Bpro_1325 general secretion pathway protein K
YP_984993.1	KEGG: rfr:Rfer_0537 methylation
YP_984994.1	TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: rfr:Rfer_0536 general secretion pathway protein I
YP_984995.1	TIGRFAM: general secretion pathway protein H; KEGG: rfr:Rfer_0535 general secretion pathway protein H
YP_984996.1	TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: pol:Bpro_1321 general secretion pathway protein G
YP_984997.1	KEGG: pol:Bpro_1320 hypothetical protein
YP_984998.1	PFAM: Phosphoglycerate mutase; KEGG: pol:Bpro_0739 phosphoglycerate mutase
YP_984999.1	PFAM: cobalamin-5-phosphate synthase CobS; KEGG: pol:Bpro_0740 cobalamin 5'-phosphate synthase
YP_985000.1	threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway
YP_985001.1	PFAM: OsmC family protein; KEGG: rfr:Rfer_0732 OsmC-like protein
YP_985002.1	KEGG: pol:Bpro_0745 putative ubiquinone biosynthesis protein
YP_985003.1	PFAM: porin, Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type
YP_985004.1	PFAM: porin, Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type
YP_985005.1	PFAM: extracellular solute-binding protein, family 5; KEGG: bpe:BP3237 putative binding-protein-dependent transport protein (periplasmic)
YP_985006.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2112 binding-protein-dependent transport systems inner membrane component
YP_985007.1	KEGG: pol:Bpro_0749 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein
YP_985008.1	PFAM: extracellular solute-binding protein, family 5; KEGG: pol:Bpro_2113 extracellular solute-binding protein, family 5
YP_985009.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2114 binding-protein-dependent transport systems inner membrane component
YP_985010.1	KEGG: pol:Bpro_2115 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_985011.1	KEGG: pol:Bpro_2116 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_985012.1	PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: mxa:MXAN_2236 putative 5'-nucleotidase
YP_985013.1	PFAM: PEBP family protein; KEGG: rfr:Rfer_3962 YbcL
YP_985014.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: pol:Bpro_0750 transcriptional regulator, RpiR family
YP_985015.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_985016.1	KEGG: pol:Bpro_0752 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase
YP_985017.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_985018.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: abo:ABO_1262 GGDEF domain protein
YP_985019.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_985020.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_985021.1	TIGRFAM: cytidyltransferase-related domain; PFAM: NUDIX hydrolase; cytidylyltransferase; KEGG: bam:Bamb_4267 cytidyltransferase-related domain
YP_985022.1	KEGG: rpb:RPB_2359 hypothetical protein
YP_985023.1	PFAM: protein of unknown function DUF1328; KEGG: pol:Bpro_0066 protein of unknown function DUF1328
YP_985025.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_985026.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: rfr:Rfer_3881 putative acyltransferase
YP_985027.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: pol:Bpro_0769 lipid A biosynthesis acyltransferase
YP_985028.1	PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_0770 alpha/beta hydrolase fold
YP_985029.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_985030.1	PFAM: cytochrome c, class I; KEGG: pol:Bpro_0772 cytochrome c, class I
YP_985031.1	PFAM: ResB family protein; KEGG: pol:Bpro_0773 ResB-like
YP_985032.1	PFAM: cytochrome c assembly protein; KEGG: pol:Bpro_0774 cytochrome c assembly protein
YP_985033.1	in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ
YP_985034.1	PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: pol:Bpro_0776 ferric reductase-like transmembrane component-like
YP_985035.1	PFAM: beta-lactamase domain protein; KEGG: reu:Reut_A0043 beta-lactamase-like
YP_985036.1	TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: pol:Bpro_0777 diaminopimelate decarboxylase
YP_985038.1	PFAM: Resolvase, N-terminal domain; KEGG: eci:UTI89_C0920 putative DNA-invertase
YP_985039.1	PFAM: Zonular occludens toxin; KEGG: nme:NMB1626 hypothetical protein
YP_985041.1	KEGG: bps:BPSL3349 hypothetical protein
YP_985043.1	KEGG: ngo:NGO1270 conserved hypothetical protein, putative phage associated protein
YP_985044.1	PFAM: replication initiation factor; KEGG: nme:NMB1634 hypothetical protein
YP_985048.1	PFAM: Frataxin family protein; KEGG: rfr:Rfer_2917 frataxin-like
YP_985049.1	KEGG: rfr:Rfer_2918 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase
YP_985050.1	TIGRFAM: type IV pilus assembly protein PilM; KEGG: pol:Bpro_0781 type IV pilus assembly protein PilM
YP_985051.1	PFAM: Fimbrial assembly family protein; KEGG: rfr:Rfer_2920 fimbrial assembly
YP_985052.1	PFAM: Pilus assembly protein, PilO; KEGG: pol:Bpro_0783 pilus assembly protein, PilO
YP_985053.1	PFAM: Pilus assembly protein, PilQ; KEGG: pol:Bpro_0784 pilus assembly protein, PilQ
YP_985054.1	TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB, short N-terminal domain; KEGG: rfr:Rfer_2923 type II and III secretion system protein
YP_985055.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_985056.1	dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_985057.1	PFAM: protein of unknown function DUF1415; KEGG: rme:Rmet_0870 protein of unknown function DUF1415
YP_985058.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rfr:Rfer_4202 IstB-like ATP-binding protein
YP_985059.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5321 ISPsy20, transposase IstA
YP_985060.1	PFAM: protein of unknown function DUF1568; KEGG: rfr:Rfer_2932 protein of unknown function DUF1568
YP_985061.1	PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rfr:Rfer_2933 glutamate synthase (ferredoxin)
YP_985062.1	glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate
YP_985063.1	PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: reu:Reut_A3014 extracellular solute-binding protein, family 3
YP_985064.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB2796 putative ABC transporter permease protein
YP_985065.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2971 ABC transporter related
YP_985066.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_985067.1	PFAM: S-adenosylmethionine decarboxylase related; KEGG: net:Neut_2465 S-adenosylmethionine decarboxylase-related protein
YP_985068.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2935 ABC transporter related
YP_985069.1	PFAM: protein of unknown function DUF140; KEGG: rfr:Rfer_2936 protein of unknown function DUF140
YP_985070.1	PFAM: Mammalian cell entry related domain protein; KEGG: rfr:Rfer_2937 mammalian cell entry related
YP_985071.1	PFAM: VacJ family lipoprotein; KEGG: rfr:Rfer_2938 VacJ-like lipoprotein
YP_985072.1	PFAM: toluene tolerance family protein; KEGG: rfr:Rfer_3630 toluene tolerance
YP_985073.1	KEGG: rfr:Rfer_2940 sulfate transporter/antisigma-factor antagonist STAS
YP_985074.1	PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase
YP_985075.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2941 ABC transporter related
YP_985076.1	PFAM: ABC-2 type transporter; KEGG: pol:Bpro_0800 ABC-2
YP_985077.1	PFAM: BolA family protein; KEGG: pol:Bpro_0801 BolA-like protein
YP_985078.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_985079.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_985080.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_985081.1	KEGG: sus:Acid_7695 PilT protein domain protein
YP_985082.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_985083.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_985084.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_985085.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_985086.1	KEGG: rso:RS01997 hypothetical signal peptide protein
YP_985087.1	KEGG: rme:Rmet_4161 putative transmembrane protein
YP_985088.1	PFAM: glycosyl transferase, group 1; KEGG: rme:Rmet_4160 glycosyl transferase, group 1
YP_985089.1	KEGG: rso:RSc2272 probable transmembrane protein
YP_985090.1	KEGG: bxe:Bxe_A2972 putative transmembrane protein
YP_985091.1	KEGG: rso:RSc2274 putative lipoprotein
YP_985092.1	PFAM: Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; KEGG: rso:RSc2275 putative signal peptide protein
YP_985093.1	PFAM: polysaccharide deacetylase; KEGG: rso:RSc2276 putative signal peptide protein
YP_985094.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mfa:Mfla_2007 UDP-glucose 4-epimerase
YP_985095.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_985096.1	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers
YP_985097.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis
YP_985098.1	KEGG: rfr:Rfer_2954 putative transmembrane protein
YP_985099.1	PFAM: Patatin; KEGG: pol:Bpro_3621 patatin
YP_985100.1	PFAM: histidine triad (HIT) protein; KEGG: pol:Bpro_0813 histidine triad (HIT) protein
YP_985101.1	TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_985102.1	TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: pol:Bpro_0815 twin-arginine translocation protein TatB
YP_985103.1	TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: pol:Bpro_0816 sec-independent protein translocase TatC
YP_985104.1	PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rfr:Rfer_2959 peptidase S1 and S6, chymotrypsin/Hap
YP_985105.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: rme:Rmet_3017 ferric reductase-like transmembrane component-like
YP_985106.1	PFAM: protein of unknown function DUF34; KEGG: pol:Bpro_0818 protein of unknown function DUF34
YP_985107.1	KEGG: rfr:Rfer_2962 4-hydroxythreonine-4-phosphate dehydrogenase; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA
YP_985108.1	homopentamer; channel that opens in response to pressure or hypoosmotic shock
YP_985109.1	KEGG: pol:Bpro_0821 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein
YP_985110.1	PFAM: Cytochrome b/b6, N-terminal domain; KEGG: pol:Bpro_0822 cytochrome b/b6-like
YP_985111.1	PFAM: cytochrome c1; KEGG: pol:Bpro_0823 cytochrome c1
YP_985112.1	PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: rfr:Rfer_2967 glutathione S-transferase-like
YP_985113.1	PFAM: Stringent starvation protein B; KEGG: rfr:Rfer_2968 stringent starvation protein B
YP_985114.1	KEGG: rfr:Rfer_2913 hypothetical protein
YP_985115.1	PFAM: peptidase M23B; KEGG: rfr:Rfer_2912 peptidase M23B
YP_985116.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_985117.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_985118.1	PFAM: protein of unknown function DUF815; KEGG: rfr:Rfer_2909 protein of unknown function DUF815
YP_985119.1	PFAM: NUDIX hydrolase; KEGG: rfr:Rfer_2908 NUDIX hydrolase
YP_985120.1	PFAM: protein of unknown function DUF329; KEGG: pol:Bpro_0846 protein of unknown function DUF329
YP_985121.1	PFAM: protein of unknown function DUF1342; KEGG: pol:Bpro_0845 protein of unknown function DUF1342
YP_985122.1	KEGG: rfr:Rfer_2905 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase
YP_985123.1	PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: rfr:Rfer_2904 prepilin peptidase
YP_985124.1	PFAM: type II secretion system protein; KEGG: pol:Bpro_0842 type II secretion system protein
YP_985125.1	KEGG: rfr:Rfer_2902 type II secretion system protein E; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase
YP_985126.1	PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase
YP_985127.1	PFAM: phage integrase family protein; KEGG: psp:PSPPH_0099 shufflon-specific recombinase
YP_985128.1	KEGG: hhe:HH1029 hypothetical protein
YP_985129.1	PFAM: protein of unknown function DUF262; KEGG: hhe:HH1030 hypothetical protein
YP_985130.1	KEGG: vvu:VV20627 hypothetical protein
YP_985132.1	KEGG: rfr:Rfer_3053 hypothetical protein
YP_985133.1	KEGG: sdn:Sden_1113 hypothetical protein
YP_985136.1	PFAM: Silent information regulator protein Sir2; KEGG: bpm:BURPS1710b_3116 transcriptional regulator, Sir2 family
YP_985141.1	PFAM: metallophosphoesterase; KEGG: reu:Reut_C6150 metallophosphoesterase
YP_985143.1	KEGG: nar:Saro_0358 putative restriction endonuclease
YP_985144.1	KEGG: neu:NE1884 possible homolog of eukaryotic DNA ligase III
YP_985145.1	KEGG: rpb:RPB_2980 hypothetical protein
YP_985146.1	KEGG: rpb:RPB_2979 hypothetical protein
YP_985147.1	KEGG: gox:GOX1506 putative chromosome segregation SMC protein
YP_985148.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rfr:Rfer_4202 IstB-like ATP-binding protein
YP_985149.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5321 ISPsy20, transposase IstA
YP_985150.1	SMART: DEAD-like helicases-like; KEGG: hch:HCH_03805 superfamily II DNA/RNA helicase, SNF2 family
YP_985151.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: hch:HCH_03804 distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster
YP_985152.1	PFAM: filamentation induced by cAMP protein Fic; KEGG: bbr:BB0907 hypothetical protein
YP_985153.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_5343 IstB-like ATP-binding protein
YP_985154.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region
YP_985156.1	PFAM: plasmid encoded RepA protein; KEGG: xac:XAC2441 replication protein
YP_985158.1	PFAM: Polyprenyl synthetase; KEGG: pol:Bpro_0840 trans-hexaprenyltranstransferase
YP_985159.1	PFAM: ribosomal protein L21; KEGG: rfr:Rfer_1268 ribosomal protein L21
YP_985160.1	involved in the peptidyltransferase reaction during translation
YP_985161.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_985162.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_985163.1	hydrolyzes diadenosine polyphosphate
YP_985164.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_985165.1	PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_0832 lytic transglycosylase, catalytic
YP_985166.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: sdy:SDY_4455 putative transport protein
YP_985167.1	TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: rfr:Rfer_1276 glutaredoxin-related protein
YP_985168.1	TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_1279 modification methylase, HemK family
YP_985169.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_985170.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_985171.1	KEGG: rfr:Rfer_1282 hypothetical protein
YP_985172.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_A3360 regulatory protein, LysR:LysR, substrate-binding
YP_985173.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A3359 hypothetical protein
YP_985174.1	PFAM: N-formylglutamate amidohydrolase; KEGG: rme:Rmet_3507 N-formylglutamate amidohydrolase
YP_985175.1	PFAM: MscS Mechanosensitive ion channel; KEGG: bbr:BB1859 hypothetical protein
YP_985176.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pol:Bpro_0853 glycerophosphodiester phosphodiesterase
YP_985177.1	PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_1284 ABC transporter related
YP_985178.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0855 binding-protein-dependent transport systems inner membrane component
YP_985179.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_0856 binding-protein-dependent transport systems inner membrane component
YP_985180.1	PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_0857 extracellular solute-binding protein, family 1
YP_985181.1	PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pae:PA0316 D-3-phosphoglycerate dehydrogenase
YP_985182.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: pol:Bpro_0858 FAD linked oxidase-like
YP_985183.1	PFAM: histidine triad (HIT) protein; KEGG: rfr:Rfer_1289 histidine triad (HIT) protein
YP_985184.1	PFAM: protein of unknown function DUF971; KEGG: rfr:Rfer_1290 protein of unknown function DUF971
YP_985185.1	TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_1291 ubiquinone/menaquinone biosynthesis methyltransferases
YP_985186.1	PFAM: import inner membrane translocase, subunit Tim44; KEGG: pol:Bpro_0861 import inner membrane translocase, subunit Tim44
YP_985187.1	KEGG: rfr:Rfer_1293 hypothetical protein
YP_985188.1	an Escherichia coli mutant results in accumulation of octaprenylphenol and no ubiquinone; functions in the formation of 2-octaprenyl-6-hydroxy-phenol from 2-octaprenylphenol in ubiquinone (coenzyme Q) biosynthesis; similar to eukaryotic proteins that exhibit kinase functions
YP_985189.1	PFAM: Na+/solute symporter; KEGG: rso:RSc0463 probable sodium/solute symporter transmembrane protein
YP_985190.1	TIGRFAM: putative regulatory protein, FmdB family; KEGG: rso:RSc0464 hypothetical protein
YP_985191.1	PFAM: protein of unknown function DUF502; KEGG: pol:Bpro_0865 protein of unknown function DUF502
YP_985192.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_985193.1	KEGG: xcb:XC_0710 hypothetical protein
YP_985194.1	PFAM: NUDIX hydrolase; KEGG: rfr:Rfer_1298 NUDIX hydrolase
YP_985195.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rfr:Rfer_1299 endonuclease/exonuclease/phosphatase
YP_985196.1	PFAM: phospholipase D/Transphosphatidylase; KEGG: rfr:Rfer_1300 phospholipase D/transphosphatidylase
YP_985197.1	PFAM: GTP cyclohydrolase I; KEGG: pol:Bpro_0869 GTP cyclohydrolase I
YP_985198.1	PFAM: BLUF domain protein; KEGG: pol:Bpro_0870 sensors of blue-light using FAD
YP_985199.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: bbr:BB3444 hypothetical protein
YP_985200.1	KEGG: rfr:Rfer_1303 hypothetical protein
YP_985201.1	KEGG: mfa:Mfla_1735 hypothetical protein
YP_985202.1	KEGG: rfr:Rfer_3472 hypothetical protein
YP_985203.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: bbr:BB4942 hypothetical protein
YP_985204.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_985205.1	PFAM: extracellular solute-binding protein, family 5; KEGG: bja:blr3234 ABC transporter substrate-binding protein
YP_985206.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr3233 ABC transporter ATP-binding protein
YP_985207.1	KEGG: bja:blr3232 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase
YP_985208.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3231 ABC transporter permease protein
YP_985209.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bja:blr3230 ABC transporter permease protein
YP_985210.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_1283 4Fe-4S ferredoxin, iron-sulfur binding
YP_985211.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_985212.1	the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response
YP_985213.1	KEGG: pol:Bpro_1293 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase
YP_985214.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_985215.1	KEGG: pol:Bpro_1295 putative lipoprotein
YP_985216.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_1296 tetratricopeptide TPR_4
YP_985217.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_985218.1	KEGG: pol:Bpro_1298 hypothetical protein
YP_985219.1	KEGG: pol:Bpro_1299 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop
YP_985220.1	PFAM: Uncharacterised P-loop ATPase protein UPF0042; KEGG: rfr:Rfer_1653 uncharacterised P-loop ATPase protein UPF0042
YP_985221.1	TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: rfr:Rfer_1652 DNA repair protein RecN
YP_985222.1	catalyzes the phosphorylation of NAD to NADP
YP_985223.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_985224.1	PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_5203 transposase IS3/IS911
YP_985225.1	PFAM: Integrase, catalytic region; KEGG: neu:NE1271 integrase, catalytic core
YP_985226.1	KEGG: eba:ebA89 hypothetical protein
YP_985227.1	PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase
YP_985228.1	KEGG: eba:ebA89 hypothetical protein
YP_985229.1	KEGG: xom:XOO_2997 hypothetical protein
YP_985230.1	KEGG: xom:XOO_2998 hypothetical protein
YP_985231.1	PFAM: transposase, mutator type; KEGG: xcv:XCVc0009 transposase, mutator family
YP_985232.1	KEGG: sma:SAV307 hypothetical protein
YP_985233.1	KEGG: bpm:BURPS1710b_A1367 hypothetical protein
YP_985234.1	PFAM: isochorismatase hydrolase; KEGG: sus:Acid_6920 isochorismatase hydrolase
YP_985235.1	KEGG: reu:Reut_A3332 hypothetical protein
YP_985236.1	KEGG: pol:Bpro_1343 hypothetical protein
YP_985237.1	KEGG: pol:Bpro_1341 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_985238.1	HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
YP_985239.1	KEGG: pol:Bpro_1339 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease
YP_985240.1	PFAM: protein phosphatase 2C domain protein; Stage II sporulation E family protein; KEGG: pol:Bpro_1338 protein serine/threonine phosphatases
YP_985241.1	PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: pol:Bpro_1337 serine/threonine protein kinase
YP_985242.1	PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: rfr:Rfer_1626 conserved hypothetical protein 255
YP_985243.1	PFAM: phage integrase family protein; KEGG: nmu:Nmul_A0064 phage integrase
YP_985245.1	PFAM: Prophage CP4-57 regulatory; KEGG: nmu:Nmul_A0062 putative transcriptional regulator
YP_985246.1	KEGG: tbd:Tbd_2069 hypothetical protein
YP_985247.1	KEGG: tbd:Tbd_2068 DnaB helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase
YP_985248.1	SMART: helix-turn-helix domain protein
YP_985255.1	KEGG: eci:UTI89_C2655 hypothetical protein
YP_985259.1	KEGG: dar:Daro_2702 hypothetical protein
YP_985261.1	KEGG: eba:ebB86 RelE-like cytotoxic translational repressor of toxin-antitoxin stability system
YP_985262.1	PFAM: helix-turn-helix domain protein; KEGG: bpa:BPP2999 putative DNA-binding protein
YP_985263.1	Essential for recycling GMP and indirectly, cGMP
YP_985264.1	Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_985265.1	KEGG: rfr:Rfer_3149 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region
YP_985266.1	TIGRFAM: transcription elongation factor GreB; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pol:Bpro_1332 GreA/GreB family elongation factor
YP_985268.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_985269.1	PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: rfr:Rfer_1489 3' exoribonuclease
YP_985270.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rfr:Rfer_1490 alcohol dehydrogenase, zinc-binding
YP_985271.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_985272.1	TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: pol:Bpro_3257 preprotein translocase, SecG subunit
YP_985273.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: pol:Bpro_3256 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
YP_985274.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_985275.1	KEGG: rfr:Rfer_1495 NADH (or F420H2) dehydrogenase, subunit C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit
YP_985276.1	Catalyzes the transfer of electrons from NADH to quinone
YP_985277.1	KEGG: pol:Bpro_3252 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit
YP_985278.1	KEGG: pol:Bpro_3251 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
YP_985279.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_985280.1	PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: pol:Bpro_3249 respiratory-chain NADH dehydrogenase, subunit 1
YP_985281.1	Catalyzes the transfer of electrons from NADH to quinone
YP_985282.1	PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: pol:Bpro_3247 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6
YP_985283.1	PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: rfr:Rfer_1503 NADH-ubiquinone oxidoreductase, chain 4L
YP_985284.1	KEGG: pol:Bpro_3245 proton-translocating NADH-quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I)
YP_985285.1	KEGG: pol:Bpro_3244 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I)
YP_985286.1	Catalyzes the transfer of electrons from NADH to quinone
YP_985287.1	KEGG: pol:Bpro_3242 putative transmembrane protein
YP_985288.1	PFAM: protein of unknown function DUF1178; KEGG: rfr:Rfer_1508 protein of unknown function DUF1178
YP_985289.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3238 ABC transporter related
YP_985291.1	KEGG: rfr:Rfer_3383 ABC transporter related
YP_985292.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pfo:Pfl_2160 lysine exporter protein (LysE/YggA)
YP_985293.1	converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer
YP_985294.1	TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase domain protein domain protein; DNA mismatch repair protein, C-terminal domain protein; KEGG: pol:Bpro_3209 DNA mismatch repair protein MutL
YP_985295.1	PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_3200 17 kDa surface antigen
YP_985296.1	KEGG: pol:Bpro_3208 DedA protein (DSG-1 protein)
YP_985298.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: rme:Rmet_5777 cupin 2, conserved barrel
YP_985299.1	PFAM: cell wall hydrolase/autolysin; KEGG: rfr:Rfer_3303 N-acetylmuramoyl-L-alanine amidase
YP_985300.1	TIGRFAM: putative iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: pol:Bpro_3197 4Fe-4S cluster binding
YP_985301.1	PFAM: Auxin Efflux Carrier; KEGG: rfr:Rfer_2655 auxin efflux carrier
YP_985302.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3194 uncharacterized protein UPF0065
YP_985303.1	TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: pol:Bpro_3191 tyrosine recombinase XerD
YP_985304.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_0026 uncharacterized protein UPF0065
YP_985305.1	PFAM: EAL domain protein; HDOD; KEGG: mfa:Mfla_1965 diguanylate phosphodiesterase (EAL domain)
YP_985306.1	PFAM: EAL domain protein; HDOD; KEGG: cvi:CV3451 putative signal transduction protein containing EAL and modified HD-GYP domains
YP_985307.1	PFAM: protein of unknown function DUF455; KEGG: pol:Bpro_3189 protein of unknown function DUF455
YP_985308.1	KEGG: rfr:Rfer_2653 transferase hexapeptide protein
YP_985309.1	PFAM: Hsp33 protein; KEGG: rfr:Rfer_2652 HSP33 protein
YP_985310.1	KEGG: pol:Bpro_3186 hypothetical protein
YP_985311.1	PFAM: Septum formation initiator; KEGG: rfr:Rfer_2651 septum formation initiator
YP_985312.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_985313.1	catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis
YP_985314.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_985315.1	TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: pol:Bpro_3180 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
YP_985316.1	catalyzes the formation of dUMP from dUTP
YP_985317.1	PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_3177 17 kDa surface antigen
YP_985318.1	KEGG: rfr:Rfer_2645 fkbp-type peptidyl-prolyl cis-trans isomerase
YP_985319.1	PFAM: AraC protein, arabinose-binding/dimerisation; Cupin 4 family protein; SMART: transcription factor jumonji, jmjC domain protein; KEGG: rfr:Rfer_2644 cupin 4
YP_985320.1	KEGG: rfr:Rfer_2643 hypothetical protein
YP_985321.1	KEGG: dar:Daro_0849 hypothetical protein
YP_985322.1	PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_3172 beta-lactamase-like
YP_985323.1	PFAM: NlpBDapX family lipoprotein; KEGG: rfr:Rfer_2096 NlpBDapX lipoprotein
YP_985324.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_985325.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_3169 methyltransferase type 11
YP_985327.1	PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3167 major facilitator superfamily MFS_1
YP_985328.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_985329.1	PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_3164 lytic transglycosylase, catalytic
YP_985330.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_985331.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2507 methyl-accepting chemotaxis sensory transducer
YP_985332.1	PFAM: Endoribonuclease L-PSP; KEGG: rfr:Rfer_2506 endoribonuclease L-PSP
YP_985333.1	PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: pol:Bpro_3157 protein of unknown function DUF404
YP_985334.1	PFAM: protein of unknown function DUF403; KEGG: rfr:Rfer_2473 protein of unknown function DUF403
YP_985336.1	KEGG: rfr:Rfer_1416 hypothetical protein
YP_985337.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3431 transcriptional regulator, LysR family
YP_985338.1	PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_0086 aldehyde dehydrogenase
YP_985339.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bbr:BB1785 putative ferrisiderophore receptor
YP_985340.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: gvi:glr0349 ferrichrome-iron receptor
YP_985341.1	KEGG: bxe:Bxe_C0724 hypothetical protein
YP_985342.1	KEGG: pfl:PFL_0987 hypothetical protein
YP_985343.1	PFAM: PepSY-associated TM helix domain protein; KEGG: bbr:BB3604 putative iron uptake protein
YP_985344.1	KEGG: bbr:BB3605 putative iron uptake protein
YP_985345.1	PFAM: Rhodanese domain protein; KEGG: pol:Bpro_1742 3-mercaptopyruvate sulfurtransferase
YP_985346.1	KEGG: pol:Bpro_1743 putative transmembrane protein
YP_985347.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: rfr:Rfer_2878 Rieske (2Fe-2S) protein
YP_985348.1	TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: pol:Bpro_1745 exonuclease VII, small subunit
YP_985349.1	PFAM: Polyprenyl synthetase; KEGG: pol:Bpro_1746 polyprenyl synthetase
YP_985350.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_985351.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rfr:Rfer_2874 twin-arginine translocation pathway signal
YP_985352.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rfr:Rfer_2872 TRAP dicarboxylate transporter-DctM subunit
YP_985353.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: rfr:Rfer_2871 tripartite ATP-independent periplasmic transporter, DctQ component
YP_985354.1	KEGG: pol:Bpro_3094 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase
YP_985355.1	PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: mag:amb4144 response regulator containing a CheY-like receiver domain and an HD-GYP domain
YP_985356.1	PFAM: inositol monophosphatase; KEGG: rfr:Rfer_2892 inositol-1(or 4)-monophosphatase
YP_985357.1	TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_3292 RNA methyltransferase TrmH, group 1
YP_985358.1	TIGRFAM: serine O-acetyltransferase; KEGG: pol:Bpro_3291 serine O-acetyltransferase
YP_985359.1	PFAM: nitroreductase; KEGG: ccr:CC0324 NADH dehydrogenase
YP_985360.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bxe:Bxe_C1356 alcohol dehydrogenase (Zn-dependent)
YP_985361.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: bma:BMA1270 sulfate permease family protein
YP_985362.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: rfr:Rfer_2889 molybdopterin binding domain
YP_985363.1	PFAM: protein of unknown function DUF615; KEGG: rfr:Rfer_2888 protein of unknown function DUF615
YP_985364.1	PFAM: peptidase U62, modulator of DNA gyrase; KEGG: rfr:Rfer_2887 peptidase U62, modulator of DNA gyrase
YP_985365.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: cvi:CV1904 probable transmembrane protein, DMT Superfamily
YP_985366.1	KEGG: eba:ebA7139 hypothetical protein, INTERPRO suggestion: probable sugar transporter superfamily
YP_985367.1	TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: pol:Bpro_2046 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
YP_985368.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_985369.1	PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: rfr:Rfer_3326 transcriptional regulator, Crp/Fnr family
YP_985370.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sfv:SFV_2140 transcriptional response regulatory protein
YP_985371.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: psb:Psyr_2867 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal
YP_985372.1	with ProVW, part of the high-affinity transport system for the osmoprotectant glycine betaine
YP_985373.1	PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase
YP_985374.1	KEGG: rru:Rru_A2477 substrate-binding region of ABC-type glycine betaine transport system
YP_985375.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A2476 binding-protein-dependent transport systems inner membrane component
YP_985376.1	KEGG: sbo:SBO_2839 ProV; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase
YP_985377.1	PFAM: Uncharacterized protein UPF0114; KEGG: pol:Bpro_2048 uncharacterized protein UPF0114
YP_985378.1	TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_2581 acetate--CoA ligase
YP_985379.1	KEGG: rfr:Rfer_3310 hypothetical protein
YP_985380.1	PFAM: cytochrome c, class I; KEGG: pol:Bpro_2050 cytochrome c, class I
YP_985381.1	KEGG: pol:Bpro_2051 hypothetical protein
YP_985382.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_985383.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_985384.1	TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: mlo:mlr6946 hypothetical protein
YP_985385.1	TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: xac:XAC1438 bacterioferritin
YP_985386.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_985387.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_2090 transcriptional regulator, GntR family
YP_985388.1	PFAM: Malonyl-CoA decarboxylase; KEGG: pol:Bpro_2091 malonyl-CoA decarboxylase
YP_985389.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2092 twin-arginine translocation pathway signal
YP_985390.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rfr:Rfer_1924 enoyl-CoA hydratase/isomerase
YP_985391.1	catalyzes the formation of malonyl-CoA from malonate and CoA
YP_985392.1	PFAM: UspA domain protein; KEGG: rfr:Rfer_1926 UspA
YP_985393.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: rfr:Rfer_1927 heavy metal translocating P-type ATPase
YP_985394.1	TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: rfr:Rfer_1929 cytochrome oxidase maturation protein, cbb3-type
YP_985395.1	CcoN; FixN
YP_985396.1	CcoO; FixO
YP_985397.1	PFAM: Cbb3-type cytochrome oxidase component; KEGG: pol:Bpro_4303 Cbb3-type cytochrome oxidase component
YP_985398.1	TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: pol:Bpro_4302 cytochrome c oxidase, cbb3-type, subunit III
YP_985399.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_4301 4Fe-4S ferredoxin, iron-sulfur binding
YP_985400.1	KEGG: pol:Bpro_4300 hypothetical protein
YP_985401.1	KEGG: rfr:Rfer_1936 hypothetical protein
YP_985402.1	PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rfr:Rfer_1937 transcriptional regulator, Crp/Fnr family
YP_985403.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_985404.1	KEGG: pol:Bpro_1209 hypothetical protein
YP_985405.1	PFAM: protein of unknown function DUF710; KEGG: rfr:Rfer_2627 protein of unknown function DUF710
YP_985406.1	KEGG: rfr:Rfer_2626 hypothetical protein
YP_985407.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cvi:CV0494 probable outer membrane receptor protein
YP_985408.1	PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pol:Bpro_2785 cobyrinic acid a,c-diamide synthase
YP_985409.1	PFAM: cobalbumin biosynthesis enzyme; KEGG: rfr:Rfer_2622 cobalbumin biosynthesis enzyme
YP_985410.1	PFAM: periplasmic binding protein; KEGG: pol:Bpro_2782 periplasmic binding protein
YP_985411.1	PFAM: transport system permease protein; KEGG: pol:Bpro_2781 transport system permease protein
YP_985412.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2780 ABC transporter related
YP_985413.1	KEGG: rfr:Rfer_2618 cob(I)alamin adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
YP_985414.1	KEGG: sma:SAV1685 hypothetical protein
YP_985415.1	KEGG: dar:Daro_3102 hypothetical protein
YP_985416.1	PFAM: transposase, mutator type; KEGG: xcv:XCVc0009 transposase, mutator family
YP_985417.1	TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rxy:Rxyl_0508 haloacid dehalogenase, type II
YP_985418.1	PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_4025 major facilitator superfamily MFS_1
YP_985419.1	KEGG: bpa:BPP1290 hypothetical protein
YP_985420.1	PFAM: regulatory protein, MarR; KEGG: gme:Gmet_0359 transcriptional regulator, MarR family
YP_985421.1	NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate
YP_985422.1	TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: sme:SMc02512 putative permease transmembrane protein
YP_985423.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pol:Bpro_1422 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
YP_985424.1	putative bifunctional enzyme; OHCU decarboxylase catalyzes 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline to allantoin and allantoate amidohydrolase converts allantoate to (S)-ureidoglycolate and ammonia
YP_985425.1	PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: xoo:XOO1675 transposase
YP_985426.1	PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1424 polysaccharide deacetylase
YP_985427.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_1425 transcriptional regulator, GntR family
YP_985428.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0441 transcriptional regulator, LysR family
YP_985429.1	KEGG: bxe:Bxe_B1620 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase
YP_985430.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065
YP_985431.1	PFAM: MOFRL domain protein; KEGG: pol:Bpro_1434 hydroxypyruvate reductase
YP_985432.1	PFAM: Transthyretin; KEGG: pol:Bpro_1426 transthyretin
YP_985433.1	KEGG: pol:Bpro_1428 hypothetical protein
YP_985434.1	PFAM: protein of unknown function DUF182; KEGG: pol:Bpro_1429 protein of unknown function DUF182
YP_985435.1	PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_2844 aldehyde dehydrogenase
YP_985436.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bja:blr0382 transcriptional regulatory protein
YP_985437.1	PFAM: protein of unknown function DUF989; KEGG: pol:Bpro_1430 putative transmembrane protein
YP_985438.1	Catalyzes the deamination of guanine
YP_985439.1	Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis
YP_985440.1	PFAM: protein of unknown function, zinc metallopeptidase putative; KEGG: pol:Bpro_1515 protein of unknown function, zinc metallopeptidase putative
YP_985441.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_1516 DEAD/DEAH box helicase-like
YP_985442.1	KEGG: rfr:Rfer_3207 hypothetical protein
YP_985443.1	PFAM: NosL family protein; KEGG: tbd:Tbd_1394 putative lipoprotein involved in nitrous oxide reduction
YP_985444.1	PFAM: ABC-2 type transporter; KEGG: eba:ebA6266 probable transmembrane protein
YP_985445.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1392 ABC transporter ATPase
YP_985446.1	PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: tbd:Tbd_1391 nitrous oxidase accessory protein
YP_985447.1	PFAM: FMN-binding domain protein; KEGG: rfr:Rfer_3198 FMN-binding
YP_985448.1	reduces nitrous oxide to nitrogen
YP_985449.1	KEGG: rfr:Rfer_0616 hypothetical protein
YP_985450.1	PFAM: cytochrome c, class I; KEGG: tbd:Tbd_1398 putative cytochrome c-type protein
YP_985451.1	PFAM: ApbE family lipoprotein; KEGG: rme:Rmet_4919 ApbE-like lipoprotein
YP_985452.1	hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP
YP_985453.1	PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: rso:RS00711 putative HNS-like transcription regulator protein
YP_985454.1	Catalyzes the conversion of citrate to isocitrate
YP_985455.1	PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: pol:Bpro_3591 salicylate 1-monooxygenase
YP_985456.1	PFAM: major facilitator superfamily MFS_1; KEGG: bja:bll2700 hypothetical protein
YP_985457.1	PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: rso:RSc1352 probable two-component response regulator transcription regulator protein
YP_985458.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902
YP_985459.1	PFAM: histidine kinase internal region; KEGG: rme:Rmet_1380 histidine kinase internal region
YP_985460.1	KEGG: rso:RSc1350 probable transmembrane protein
YP_985461.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_985462.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, transmembrane region; KEGG: rfr:Rfer_3471 diguanylate cyclase
YP_985463.1	PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_1830 alpha/beta hydrolase
YP_985464.1	PFAM: 20S proteasome, A and B subunits; KEGG: rfr:Rfer_1831 hypothetical protein
YP_985465.1	PFAM: Alkaline phosphatase; KEGG: rfr:Rfer_1326 alkaline phosphatase
YP_985466.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_0005 diguanylate cyclase
YP_985467.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rfr:Rfer_2783 alcohol dehydrogenase, zinc-binding
YP_985468.1	catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate
YP_985469.1	KEGG: pol:Bpro_3060 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_985470.1	PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: rfr:Rfer_2780 peptidase M23B
YP_985471.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rfr:Rfer_2314 pseudouridine synthase, RluD
YP_985472.1	TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: rfr:Rfer_2313 putative transcriptional regulator
YP_985473.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: rfr:Rfer_2312 pseudouridine synthase, Rsu
YP_985474.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_985475.1	TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: rfr:Rfer_2310 hypothetical protein
YP_985476.1	KEGG: pol:Bpro_2610 tetratricopeptide TPR_2; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein
YP_985477.1	KEGG: pol:Bpro_2609 hypothetical protein
YP_985478.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_985479.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_985480.1	KEGG: pol:Bpro_2606 hypothetical protein
YP_985481.1	PFAM: Pyrrolo-quinoline quinone; KEGG: pol:Bpro_2605 pyrrolo-quinoline quinone
YP_985482.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_985483.1	TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: rfr:Rfer_2302 host factor Hfq
YP_985484.1	TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: rfr:Rfer_2301 small GTP-binding protein domain
YP_985485.1	TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: rfr:Rfer_2300 HflK protein
YP_985486.1	TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: rfr:Rfer_2299 HflC protein
YP_985487.1	KEGG: rfr:Rfer_2298 hypothetical protein
YP_985488.1	PFAM: tRNA synthetase, class II (G, H, P and S); KEGG: rfr:Rfer_2297 tRNA synthetase, class II (G, H, P and S)
YP_985489.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_985490.1	PFAM: phosphoribosyltransferase; KEGG: pol:Bpro_2596 phosphoribosyltransferase
YP_985491.1	PFAM: pseudouridine synthase; KEGG: rfr:Rfer_2976 pseudouridine synthase, Rsu
YP_985492.1	KEGG: pol:Bpro_1802 hypothetical protein
YP_985493.1	PFAM: polysaccharide deacetylase; KEGG: pol:Bpro_1803 polysaccharide deacetylase
YP_985494.1	KEGG: pol:Bpro_1804 hypothetical protein
YP_985495.1	KEGG: rfr:Rfer_2977 putative transmembrane protein
YP_985496.1	PFAM: molybdopterin binding domain; KEGG: pol:Bpro_1806 molybdopterin binding domain
YP_985497.1	KEGG: pol:Bpro_1807 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp
YP_985498.1	KEGG: rfr:Rfer_2980 conserved hypothetical signal peptide protein
YP_985499.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1809 signal transduction histidine kinase, nitrogen specific, NtrB
YP_985500.1	KEGG: pol:Bpro_1810 nitrogen metabolism transcriptional regulator, NtrC, fis family; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_985501.1	KEGG: par:Psyc_1331 hypothetical protein
YP_985502.1	TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pol:Bpro_1820 exodeoxyribonuclease III (xth)
YP_985503.1	PFAM: dihydrofolate reductase region; KEGG: pol:Bpro_1822 dihydrofolate reductase
YP_985504.1	KEGG: net:Neut_1890 conserved hypothetical protein
YP_985505.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_985506.1	PFAM: FAD linked oxidase domain protein; KEGG: pol:Bpro_1828 FAD linked oxidase-like
YP_985507.1	KEGG: pol:Bpro_1829 membrane protein-like
YP_985508.1	TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: pol:Bpro_1830 ribonuclease BN, putative
YP_985509.1	PFAM: amine oxidase; KEGG: rfr:Rfer_1548 amine oxidase
YP_985510.1	PFAM: Squalene/phytoene synthase; KEGG: pol:Bpro_2017 squalene/phytoene synthase
YP_985511.1	PFAM: metallophosphoesterase; KEGG: pol:Bpro_2244 metallophosphoesterase
YP_985512.1	KEGG: eba:ebA5591 hypothetical protein
YP_985513.1	PFAM: Squalene/phytoene synthase; KEGG: rfr:Rfer_1550 squalene/phytoene synthase
YP_985514.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_1551 secretion protein HlyD
YP_985515.1	PFAM: acriflavin resistance protein; KEGG: pol:Bpro_2028 acriflavin resistance protein
YP_985516.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_985517.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_985518.1	binds and unfolds substrates as part of the ClpXP protease
YP_985519.1	KEGG: rfr:Rfer_1556 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_985520.1	PFAM: phage integrase family protein; KEGG: xcv:XCV2261 phage-related integrase
YP_985521.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5321 ISPsy20, transposase IstA
YP_985522.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rfr:Rfer_4202 IstB-like ATP-binding protein
YP_985523.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein
YP_985524.1	PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: sco:SCO2329 transcriptional regulator
YP_985525.1	PFAM: LysR, substrate-binding; KEGG: xfa:XF1719 hypothetical protein
YP_985526.1	KEGG: mag:amb3764 hypothetical protein
YP_985527.1	PFAM: Integrase, catalytic region; KEGG: nha:Nham_4579 integrase, catalytic region
YP_985528.1	PFAM: TniB family protein; KEGG: rme:Rmet_4973 TniB
YP_985529.1	KEGG: mag:amb3760 hypothetical protein
YP_985530.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase
YP_985531.1	PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: xoo:XOO1675 transposase
YP_985532.1	PFAM: LysR, substrate-binding; KEGG: bxe:Bxe_A1136 transcriptional regulator, LysR family
YP_985533.1	PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase
YP_985534.1	KEGG: xfa:XF1722 hypothetical protein
YP_985535.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: pfo:Pfl_2396 heavy metal efflux pump CzcA
YP_985536.1	PFAM: copper resistance B precursor; KEGG: rso:RSp0657 probable copper resistance protein B
YP_985537.1	TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: net:Neut_0021 copper-resistance protein, CopA family protein
YP_985538.1	TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: net:Neut_0018 two component heavy metal response transcriptional regulator, winged helix family protein
YP_985539.1	PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_C0741 putative transposase IS30
YP_985540.1	KEGG: pol:Bpro_2475 integrase, catalytic region
YP_985541.1	PFAM: cytochrome c, class I; iron permease FTR1; KEGG: rme:Rmet_5945 iron permease FTR1
YP_985542.1	TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: rme:Rmet_5946 transcriptional regulator, MerR family
YP_985543.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rme:Rmet_5947 heavy metal translocating P-type ATPase
YP_985544.1	TIGRFAM: lipoprotein signal peptidase; PFAM: phosphoesterase, PA-phosphatase related; peptidase A8, signal peptidase II; KEGG: rme:Rmet_5948 lipoprotein signal peptidase
YP_985545.1	PFAM: protein of unknown function DUF1528; Relaxase; KEGG: xfa:XF1753 hypothetical protein
YP_985546.1	TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: bxe:Bxe_A1174 transcriptional regulator, AbrB family
YP_985547.1	KEGG: bxe:Bxe_A1175 hypothetical protein
YP_985548.1	KEGG: bxe:Bxe_A1176 hypothetical protein
YP_985549.1	KEGG: bxe:Bxe_A1177 hypothetical protein
YP_985550.1	KEGG: rme:Rmet_2359 hypothetical protein
YP_985551.1	KEGG: rme:Rmet_2358 hypothetical protein
YP_985552.1	PFAM: protein of unknown function DUF1527; KEGG: rme:Rmet_2357 protein of unknown function DUF1527
YP_985553.1	PFAM: protein of unknown function DUF1525; KEGG: rme:Rmet_2356 protein of unknown function DUF1525
YP_985554.1	PFAM: DNA repair protein RadC; KEGG: rme:Rmet_2355 DNA repair protein RadC
YP_985555.1	KEGG: rme:Rmet_2354 hypothetical protein
YP_985556.1	KEGG: rme:Rmet_2353 hypothetical protein
YP_985557.1	KEGG: rme:Rmet_2352 putative secreted protein
YP_985558.1	KEGG: rme:Rmet_2351 putative secreted protein
YP_985559.1	KEGG: rme:Rmet_2350 putative secreted protein
YP_985560.1	KEGG: rme:Rmet_2349 putative secreted protein
YP_985561.1	KEGG: rme:Rmet_2348 hypothetical protein
YP_985562.1	KEGG: rme:Rmet_2347 hypothetical protein
YP_985563.1	KEGG: bxe:Bxe_A1191 hypothetical protein
YP_985564.1	KEGG: rme:Rmet_2345 plasmid conserved hypothetical protein, RAQPRD
YP_985565.1	TIGRFAM: DNA binding domain, excisionase family; KEGG: rme:Rmet_2344 excisionase/Xis, DNA-binding
YP_985566.1	KEGG: rme:Rmet_2343 hypothetical protein
YP_985567.1	PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rme:Rmet_2342 AAA ATPase, central region
YP_985568.1	KEGG: rpe:RPE_2468 hypothetical protein
YP_985569.1	KEGG: rme:Rmet_2341 hypothetical protein
YP_985570.1	KEGG: rme:Rmet_2340 hypothetical protein
YP_985571.1	KEGG: rme:Rmet_2339 hypothetical protein
YP_985572.1	KEGG: rme:Rmet_2338 hypothetical protein
YP_985573.1	KEGG: rme:Rmet_2337 hypothetical protein
YP_985574.1	KEGG: bxe:Bxe_A1195 hypothetical protein
YP_985575.1	KEGG: rme:Rmet_2335 putative secreted protein
YP_985576.1	PFAM: Lytic transglycosylase, catalytic; KEGG: xcv:XCV2379 putative lytic transglycosylase precursor
YP_985577.1	KEGG: xcv:XCV2380 putative secreted protein
YP_985578.1	KEGG: xcb:XC_2044 hypothetical protein
YP_985579.1	KEGG: xcv:XCV2382 putative secreted protein
YP_985580.1	SMART: regulatory protein, ArsR; KEGG: bbr:BB2784 putative transcriptional regulator
YP_985581.1	PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mes:Meso_4199 protein tyrosine phosphatase
YP_985582.1	TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: net:Neut_2261 bile acid:sodium symporter
YP_985583.1	TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: bbr:BB2782 arsenate reductase
YP_985584.1	PFAM: NADPH-dependent FMN reductase; KEGG: bpa:BPP2717 putative NADPH-dependent FMN reductase
YP_985585.1	PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rme:Rmet_2330 helicase-like protein
YP_985586.1	KEGG: rme:Rmet_2329 hypothetical protein
YP_985587.1	KEGG: xcv:XCV2388 hypothetical protein
YP_985588.1	KEGG: xcv:XCV2389 hypothetical protein
YP_985589.1	KEGG: xcv:XCV2390 hypothetical protein
YP_985590.1	KEGG: xcv:XCV2391 hypothetical protein
YP_985591.1	KEGG: xcv:XCV2392 hypothetical protein
YP_985592.1	KEGG: xcv:XCV2393 hypothetical protein
YP_985593.1	KEGG: rme:Rmet_2322 hypothetical protein
YP_985594.1	KEGG: rme:Rmet_2320 hypothetical protein
YP_985595.1	KEGG: rme:Rmet_2318 hypothetical protein
YP_985596.1	TIGRFAM: mercuric reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; Heavy metal transport/detoxification protein; KEGG: mca:MCA1340 mercuric reductase
YP_985597.1	TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: rme:Rmet_2314 mercuric transport protein periplasmic component
YP_985598.1	PFAM: Mercuric transport protein MerT; KEGG: rme:Rmet_2313 mercuric transport protein MerT
YP_985599.1	TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: rme:Rmet_2312 transcriptional regulator, MerR family
YP_985600.1	KEGG: rme:Rmet_2311 hypothetical protein
YP_985601.1	KEGG: rme:Rmet_2310 hypothetical protein
YP_985602.1	KEGG: rme:Rmet_2309 hypothetical protein
YP_985603.1	KEGG: rme:Rmet_2308 hypothetical protein
YP_985604.1	KEGG: rme:Rmet_2307 hypothetical protein
YP_985605.1	KEGG: xfa:XF1773 hypothetical protein
YP_985606.1	PFAM: C-5 cytosine-specific DNA methylase; KEGG: xcv:XCV2405 DNA methyltransferase
YP_985607.1	decatenates replicating daughter chromosomes
YP_985608.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_985609.1	KEGG: bxe:Bxe_A1225 putative integrase regulator R protein
YP_985610.1	KEGG: rme:Rmet_2295 hypothetical protein
YP_985611.1	KEGG: rme:Rmet_2294 hypothetical protein
YP_985612.1	KEGG: rme:Rmet_2293 hypothetical protein
YP_985613.1	KEGG: rme:Rmet_2292 hypothetical protein
YP_985614.1	KEGG: rme:Rmet_2291 hypothetical protein
YP_985615.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rme:Rmet_2290 cobyrinic acid a,c-diamide synthase
YP_985616.1	PFAM: Prophage CP4-57 regulatory; KEGG: rme:Rmet_2289 phage transcriptional regulator, AlpA
YP_985617.1	KEGG: rme:Rmet_2288 hypothetical protein
YP_985618.1	PFAM: protein of unknown function DUF305; KEGG: rme:Rmet_2287 protein of unknown function DUF305
YP_985619.1	PFAM: transposase Tn3 family protein; KEGG: pol:Bpro_2470 transposase Tn3
YP_985620.1	TIGRFAM: putative addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: ccr:CC2985 hypothetical protein
YP_985621.1	PFAM: protein of unknown function UPF0060; KEGG: nmu:Nmul_A0351 hypothetical protein
YP_985623.1	KEGG: dar:Daro_2616 hypothetical protein
YP_985624.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2617 heavy metal efflux pump CzcA
YP_985625.1	KEGG: dar:Daro_2618 hypothetical protein
YP_985626.1	KEGG: dar:Daro_2619 hypothetical protein
YP_985627.1	PFAM: outer membrane efflux protein; KEGG: dar:Daro_2620 outer membrane efflux protein
YP_985628.1	KEGG: dar:Daro_2621 hypothetical protein
YP_985629.1	KEGG: dsy:DSY0910 hypothetical protein
YP_985630.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_2631 ATPase, E1-E2 type:heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:heavy metal translocating P-type ATPase
YP_985631.1	TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: dar:Daro_2633 Cd(II)/Pb(II)-responsive transcriptional regulator
YP_985632.1	PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: bma:BMAA1051 phage integrase family protein
YP_985633.1	KEGG: mlo:mlr6200 hypothetical protein
YP_985634.1	PFAM: phage integrase family protein; KEGG: xcv:XCV2298 phage-related integrase
YP_985635.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_5343 IstB-like ATP-binding protein
YP_985636.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region
YP_985637.1	PFAM: LysR, substrate-binding; KEGG: xcv:XCV2299 transcriptional regulator, LysR family
YP_985638.1	KEGG: mag:amb3764 hypothetical protein
YP_985639.1	PFAM: Integrase, catalytic region; KEGG: nha:Nham_4579 integrase, catalytic region
YP_985640.1	PFAM: TniB family protein; KEGG: rme:Rmet_4973 TniB
YP_985641.1	KEGG: mag:amb3760 hypothetical protein
YP_985642.1	PFAM: helix-turn-helix domain protein; KEGG: xcv:XCV2300 hypothetical protein
YP_985643.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: xcv:XCV2301 transcriptional regulator, LysR family
YP_985644.1	KEGG: xcv:XCV2302 hypothetical protein
YP_985645.1	Catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_985646.1	PFAM: protein of unknown function DUF81; KEGG: xcv:XCV2304 hypothetical protein
YP_985647.1	KEGG: xcv:XCV2305 hypothetical protein
YP_985648.1	Involved in disulfide bond formation
YP_985649.1	PFAM: Redoxin domain protein; KEGG: xcv:XCV2307 putative thiol disulfide interchange protein
YP_985650.1	PFAM: cytochrome c biogenesis protein, transmembrane region; Thioredoxin domain; KEGG: xcv:XCV2308 putative thiol:disulfide interchange protein
YP_985651.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xcv:XCV2309 two-component system regulatory protein
YP_985652.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: xcv:XCV2310 two-component system sensor protein
YP_985653.1	KEGG: xcv:XCV2311 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_985654.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: xcv:XCV2312 hypothetical protein
YP_985655.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: xcv:XCV2313 putative thioredoxin
YP_985656.1	PFAM: Rhodanese domain protein; regulatory protein, ArsR; KEGG: xcv:XCV2314 transcriptional regulator, ArsR family
YP_985657.1	PFAM: DSBA oxidoreductase; KEGG: xcv:XCV2315 putative thiol:disulfide interchange protein
YP_985658.1	KEGG: xcv:XCV2316 putative secreted protein
YP_985659.1	KEGG: xcv:XCV2317 putative secreted protein
YP_985660.1	PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: xcv:XCV2318 tellurite-resistance/dicarboxylate transporter family protein
YP_985661.1	PFAM: Heavy metal transport/detoxification protein; KEGG: xcv:XCV2319 hypothetical protein
YP_985662.1	PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV2339 putative major facilitator superfamily protein
YP_985663.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: xcv:XCV2338 cobalt-zinc-cadmium resistance protein
YP_985664.1	PFAM: regulatory protein, ArsR; KEGG: xcv:XCV2337 transcriptional regulator, ArsR family
YP_985665.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: xcv:XCV2336 copper-translocating P-type ATPase
YP_985666.1	TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: xcv:XCV2335 transcriptional regulator, MerR family
YP_985667.1	PFAM: major facilitator superfamily MFS_1; KEGG: xcv:XCV2334 putative major facilitator superfamily protein
YP_985668.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: xcv:XCV2333 putative Zn-dependent alcohol dehydrogenase
YP_985669.1	PFAM: aminotransferase, class I and II; KEGG: xcv:XCV2332 putative aminotransferase
YP_985670.1	PFAM: amine oxidase; KEGG: xcv:XCV2331 putative amine oxidase
YP_985671.1	PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase
YP_985672.1	PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase
YP_985673.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bam:Bamb_6446 alkylhydroperoxidase like protein, AhpD family
YP_985674.1	KEGG: bam:Bamb_6447 hypothetical protein
YP_985675.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: bam:Bamb_6448 short-chain dehydrogenase/reductase SDR
YP_985676.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: xcv:XCV2354 transcriptional regulator, LysR family
YP_985677.1	KEGG: xcv:XCV2355 hypothetical protein
YP_985678.1	PFAM: protein of unknown function DUF1528; Relaxase; KEGG: xcv:XCV2356 hypothetical protein
YP_985679.1	KEGG: xcv:XCV2357 hypothetical protein
YP_985680.1	KEGG: xcv:XCV2358 hypothetical protein
YP_985681.1	KEGG: xcv:XCV2359 hypothetical protein
YP_985682.1	KEGG: xcv:XCV2360 hypothetical protein
YP_985683.1	KEGG: xcv:XCV2361 hypothetical protein
YP_985684.1	KEGG: xcv:XCV2362 hypothetical protein
YP_985685.1	PFAM: protein of unknown function DUF1527; KEGG: xcv:XCV2363 putative secreted protein
YP_985686.1	PFAM: protein of unknown function DUF1525; KEGG: rme:Rmet_2356 protein of unknown function DUF1525
YP_985687.1	PFAM: DNA repair protein RadC; KEGG: rme:Rmet_2355 DNA repair protein RadC
YP_985688.1	KEGG: xcv:XCV2366 hypothetical protein
YP_985689.1	KEGG: xcv:XCV2367 hypothetical protein
YP_985690.1	KEGG: xcv:XCV2368 putative secreted protein
YP_985691.1	KEGG: rme:Rmet_2351 putative secreted protein
YP_985692.1	KEGG: rme:Rmet_2350 putative secreted protein
YP_985693.1	KEGG: rme:Rmet_2349 putative secreted protein
YP_985694.1	KEGG: rme:Rmet_2348 hypothetical protein
YP_985695.1	KEGG: rme:Rmet_2347 hypothetical protein
YP_985696.1	KEGG: bxe:Bxe_A1191 hypothetical protein
YP_985697.1	KEGG: xcv:XCV2375 putative secreted protein
YP_985698.1	KEGG: xcv:XCV2376 hypothetical protein
YP_985699.1	KEGG: bxe:Bxe_A1195 hypothetical protein
YP_985700.1	KEGG: rme:Rmet_2335 putative secreted protein
YP_985701.1	PFAM: Lytic transglycosylase, catalytic; KEGG: xcv:XCV2379 putative lytic transglycosylase precursor
YP_985702.1	KEGG: xcv:XCV2380 putative secreted protein
YP_985703.1	KEGG: xcv:XCV2381 putative secreted protein
YP_985704.1	KEGG: xcv:XCV2382 putative secreted protein
YP_985705.1	KEGG: xcv:XCV2383 hypothetical protein
YP_985706.1	PFAM: cytochrome c, class I; KEGG: xcv:XCV2384 putative cytochrome precursor
YP_985707.1	KEGG: xcv:XCV2385 hypothetical protein
YP_985708.1	PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: xcv:XCV2386 putative helicase
YP_985709.1	KEGG: rme:Rmet_2329 hypothetical protein
YP_985710.1	KEGG: rme:Rmet_2328 hypothetical protein
YP_985711.1	KEGG: xcv:XCV2389 hypothetical protein
YP_985712.1	KEGG: rme:Rmet_2326 hypothetical protein
YP_985713.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902
YP_985714.1	KEGG: xcv:XCV2391 hypothetical protein
YP_985715.1	KEGG: xfa:XF1758 hypothetical protein
YP_985716.1	KEGG: rme:Rmet_2323 hypothetical protein
YP_985717.1	PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: aeh:Mlg_0116 transposase, IS204/IS1001/IS1096/IS1165 family protein
YP_985718.1	KEGG: ecs:pO157p35 similar to SwissProt accession number P19593
YP_985719.1	PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase
YP_985720.1	KEGG: xcv:XCV2394 hypothetical protein
YP_985721.1	KEGG: xcv:XCV2395 hypothetical protein
YP_985722.1	KEGG: xcv:XCV2396 hypothetical protein
YP_985723.1	KEGG: xcv:XCV2397 hypothetical protein
YP_985724.1	KEGG: xcv:XCV2398 hypothetical protein
YP_985725.1	KEGG: xcv:XCV2399 hypothetical protein
YP_985726.1	KEGG: xcv:XCV2400 hypothetical protein
YP_985727.1	KEGG: xcv:XCV2401 hypothetical protein
YP_985728.1	KEGG: rme:Rmet_2307 hypothetical protein
YP_985729.1	KEGG: xfa:XF1773 hypothetical protein
YP_985730.1	PFAM: C-5 cytosine-specific DNA methylase; KEGG: xcv:XCV2405 DNA methyltransferase
YP_985731.1	decatenates replicating daughter chromosomes
YP_985732.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_985733.1	KEGG: bxe:Bxe_A1225 putative integrase regulator R protein
YP_985734.1	KEGG: rme:Rmet_2295 hypothetical protein
YP_985735.1	KEGG: rme:Rmet_2294 hypothetical protein
YP_985736.1	KEGG: xcv:XCV2411 hypothetical protein
YP_985737.1	KEGG: xcv:XCV2412 hypothetical protein
YP_985738.1	KEGG: xcv:XCV2413 hypothetical protein
YP_985739.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: xcv:XCV2414 chromosome partitioning related protein
YP_985740.1	PFAM: Prophage CP4-57 regulatory; KEGG: xcv:XCV2415 putative regulatory protein, AlpA family
YP_985741.1	KEGG: xcv:XCV2416 hypothetical protein
YP_985742.1	KEGG: rso:RSc2574 hypothetical/unknown protein
YP_985743.1	PFAM: transposase IS3/IS911 family protein; KEGG: xcb:XC_0859 IS1477 transposase ORFA
YP_985744.1	PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein
YP_985745.1	TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rme:Rmet_5673 heavy metal sensor signal transduction histidine kinase
YP_985746.1	TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tbd:Tbd_1749 two component heavy metal response transcriptional regulator, winged helix family
YP_985747.1	KEGG: pol:Bpro_3489 hypothetical protein
YP_985748.1	KEGG: ppu:PP_5391 hypothetical protein
YP_985749.1	KEGG: ppu:PP_5390 hypothetical protein
YP_985750.1	PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: ppu:PP_5389 hypothetical protein
YP_985751.1	PFAM: Heavy metal transport/detoxification protein; KEGG: mmc:Mmcs_3947 heavy metal transport/detoxification protein
YP_985752.1	KEGG: ana:asl7591 hypothetical protein
YP_985753.1	KEGG: rfr:Rfer_0418 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein
YP_985754.1	KEGG: lpp:lpp2348 hypothetical protein
YP_985755.1	TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: cytochrome d1, heme region; KEGG: pol:Bpro_1180 40-residue YVTN beta-propeller repeat
YP_985756.1	KEGG: mac:MA2063 hypothetical protein
YP_985757.1	PFAM: protein of unknown function UPF0060; KEGG: rso:RS05320 probable transmembrane protein
YP_985758.1	TIGRFAM: Hg(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: noc:Noc_2760 Hg(II)-responsive transcriptional regulator
YP_985759.1	PFAM: Mercuric transport protein MerT; KEGG: pol:Bpro_4797 mercuric transport protein MerT
YP_985760.1	TIGRFAM: mercuric transport protein periplasmic component; PFAM: Heavy metal transport/detoxification protein; KEGG: neu:NE0841 mercury scavenger protein:heavy-metal-associated domain
YP_985762.1	KEGG: pol:Bpro_1182 membrane protein-like
YP_985763.1	KEGG: reu:Reut_A1356 hypothetical protein
YP_985764.1	PFAM: outer membrane efflux protein; KEGG: dar:Daro_2263 outer membrane efflux protein
YP_985765.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dar:Daro_2264 secretion protein HlyD
YP_985766.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2265 heavy metal efflux pump CzcA
YP_985767.1	TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: rfr:Rfer_0549 flagellar hook-basal body complex protein
YP_985768.1	KEGG: rme:Rmet_6120 hypothetical protein
YP_985771.1	KEGG: ana:asl7591 hypothetical protein
YP_985772.1	PFAM: Heavy metal transport/detoxification protein; KEGG: bcn:Bcen_5366 heavy metal translocating P-type ATPase
YP_985773.1	KEGG: tbd:Tbd_1323 hypothetical protein
YP_985774.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: psp:PSPPH_5162 cyclopropane-fatty-acyl-phospholipid synthase
YP_985775.1	KEGG: reu:Reut_C6194 peptidase M41, FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; SMART: AAA ATPase
YP_985776.1	PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: mes:Meso_3878 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
YP_985777.1	PFAM: ABC-1 domain protein; KEGG: mes:Meso_3885 twin-arginine translocation pathway signal
YP_985778.1	KEGG: pol:Bpro_1196 hypothetical protein
YP_985779.1	KEGG: son:SO3561 hypothetical protein
YP_985780.1	PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mfa:Mfla_0261 peptidase S1 and S6, chymotrypsin/Hap
YP_985781.1	Catalyzes the formation of PRPP from ATP and ribose 5-phosphate
YP_985782.1	catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine
YP_985783.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pol:Bpro_1210 beta-lactamase-like
YP_985784.1	PFAM: protein of unknown function DUF477; KEGG: rpc:RPC_1335 protein of unknown function DUF477
YP_985785.1	PFAM: protein of unknown function DUF477; KEGG: bpm:BURPS1710b_0509 lipoprotein, putative
YP_985786.1	PFAM: LemA family protein; KEGG: rfr:Rfer_0102 LemA
YP_985787.1	PFAM: major facilitator superfamily MFS_1; KEGG: nha:Nham_4365 major facilitator superfamily MFS_1
YP_985788.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: nha:Nham_4364 copper-translocating P-type ATPase
YP_985789.1	PFAM: protein of unknown function DUF344; KEGG: reu:Reut_C6193 protein of unknown function DUF344
YP_985790.1	PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase
YP_985791.1	KEGG: dar:Daro_2332 hypothetical protein
YP_985792.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: nmu:Nmul_A1260 TonB-dependent siderophore receptor
YP_985793.1	PFAM: TraG domain protein; KEGG: dar:Daro_2331 hypothetical protein
YP_985794.1	PFAM: TraH family protein; KEGG: eba:ebA6635 hypothetical protein
YP_985795.1	KEGG: eba:ebA6633 hypothetical protein
YP_985796.1	KEGG: eba:ebA6631 hypothetical protein
YP_985797.1	TraN; TrhN; involved in stabilizing mating pairs during plasmid conjugation; F plasmid TraN appears to recognize OmpA in the recipient cell
YP_985798.1	KEGG: dar:Daro_2659 hypothetical protein
YP_985799.1	PFAM: TraU family protein; KEGG: eba:ebA6622 hypothetical protein
YP_985800.1	TIGRFAM: Prokaryotic membrane lipoprotein lipid attachment site; KEGG: eba:ebA6618 hypothetical protein
YP_985801.1	KEGG: dar:Daro_2323 hypothetical protein
YP_985802.1	KEGG: eba:ebA6617 hypothetical protein
YP_985803.1	KEGG: eba:ebD17 hypothetical protein
YP_985804.1	KEGG: dar:Daro_2653 hypothetical protein
YP_985805.1	KEGG: eba:ebA6611 hypothetical protein
YP_985806.1	KEGG: eba:ebA6610 periplasmic thiol:disulfide interchange protein
YP_985807.1	PFAM: TraB pilus assembly family protein; KEGG: eba:ebA6607 plasmid-like sex pilus assembly protein TraB
YP_985808.1	KEGG: eba:ebA6601 hypothetical protein
YP_985809.1	KEGG: eba:ebA6600 plasmid-like conjugative transfer protein TraE
YP_985810.1	PFAM: TraL family protein; KEGG: dar:Daro_2647 TraL
YP_985811.1	KEGG: dar:Daro_2313 hypothetical protein
YP_985813.1	PFAM: Lytic transglycosylase, catalytic; KEGG: dar:Daro_2644 lytic transglycosylase, catalytic
YP_985814.1	KEGG: eba:ebA6591 hypothetical protein
YP_985815.1	KEGG: dar:Daro_2232 hypothetical protein
YP_985816.1	PFAM: helix-turn-helix domain protein; KEGG: bte:BTH_I3134 DNA-binding protein
YP_985817.1	KEGG: dar:Daro_2308 hypothetical protein
YP_985818.1	KEGG: dar:Daro_2307 hypothetical protein
YP_985819.1	PFAM: Relaxase; KEGG: dar:Daro_2306 relaxase
YP_985820.1	KEGG: dar:Daro_2305 hypothetical protein
YP_985821.1	KEGG: dar:Daro_2304 hypothetical protein
YP_985822.1	PFAM: peptidase S24, S26A and S26B; KEGG: eci:UTI89_C5095 putative regulatory protein
YP_985823.1	KEGG: dar:Daro_2292 hypothetical protein
YP_985825.1	SMART: Phage P4 alpha, zinc-binding domain protein; KEGG: dar:Daro_2291 hypothetical protein
YP_985826.1	KEGG: dar:Daro_2290 ATP-binding region, ATPase-like
YP_985827.1	KEGG: dar:Daro_2571 hypothetical protein
YP_985828.1	KEGG: dar:Daro_2288 hypothetical protein
YP_985829.1	KEGG: dar:Daro_2287 hypothetical protein
YP_985830.1	KEGG: dar:Daro_2286 hypothetical protein
YP_985831.1	PFAM: Prophage CP4-57 regulatory; KEGG: dar:Daro_2566 prophage CP4-57 regulatory
YP_985833.1	PFAM: protein of unknown function DUF1173; KEGG: dar:Daro_2244 protein of unknown function DUF1173
YP_985834.1	PFAM: phage integrase family protein; KEGG: dar:Daro_2245 hypothetical protein
YP_985835.1	KEGG: dar:Daro_2239 hypothetical protein
YP_985836.1	PFAM: metallophosphoesterase; KEGG: dar:Daro_2561 DNA repair exonuclease-like protein
YP_985837.1	PFAM: protein of unknown function DUF450
YP_985838.1	KEGG: bpm:BURPS1710b_2544 hypothetical protein
YP_985839.1	KEGG: plt:Plut_1900 hypothetical protein
YP_985840.1	KEGG: dar:Daro_2237 putative ATPase involved in DNA repair
YP_985841.1	KEGG: dar:Daro_2232 hypothetical protein
YP_985842.1	KEGG: dar:Daro_2230 hypothetical protein
YP_985843.1	KEGG: dar:Daro_2227 hypothetical protein
YP_985844.1	KEGG: dar:Daro_2226 hypothetical protein
YP_985845.1	KEGG: dar:Daro_2225 hypothetical protein
YP_985847.1	PFAM: helicase domain protein; KEGG: dar:Daro_2221 helicase, C-terminal
YP_985848.1	KEGG: eba:ebB75 hypothetical protein
YP_985849.1	KEGG: dar:Daro_2229 hypothetical protein
YP_985850.1	KEGG: dar:Daro_2228 hypothetical protein
YP_985851.1	KEGG: plu:plu1482 hypothetical protein
YP_985852.1	KEGG: eba:ebA2475 hypothetical protein
YP_985853.1	KEGG: rpa:RPA2566 putative EA59 gene protein, phage lambda
YP_985854.1	KEGG: rpa:RPA2567 possible EA31 gene protein, phage lambda
YP_985855.1	KEGG: dar:Daro_2544 hypothetical protein
YP_985856.1	TIGRFAM: DNA binding domain, excisionase family; KEGG: ttj:TTHA1162 excisionase domain protein
YP_985857.1	KEGG: rpc:RPC_4423 hypothetical protein
YP_985858.1	PFAM: histone family protein DNA-binding protein; KEGG: xcv:XCV3071 bacterial DNA-binding protein
YP_985860.1	TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: dar:Daro_2542 ParB-like partition protein
YP_985861.1	KEGG: dar:Daro_2541 hypothetical protein
YP_985862.1	KEGG: dar:Daro_2540 hypothetical protein
YP_985863.1	KEGG: dar:Daro_2539 hypothetical protein
YP_985864.1	KEGG: dar:Daro_2538 hypothetical protein
YP_985865.1	KEGG: dar:Daro_2537 hypothetical protein
YP_985866.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: dar:Daro_2536 UBA/ThiF-type NAD/FAD binding fold
YP_985867.1	PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: reu:Reut_B5596 histone-like nucleoid-structuring protein H-NS
YP_985868.1	KEGG: dar:Daro_2218 hypothetical protein
YP_985869.1	KEGG: dar:Daro_2217 hypothetical protein
YP_985870.1	KEGG: dar:Daro_2216 hypothetical protein
YP_985871.1	KEGG: dar:Daro_2528 hypothetical protein
YP_985872.1	KEGG: dar:Daro_2214 hypothetical protein
YP_985873.1	PFAM: phage integrase family protein; KEGG: bxe:Bxe_C0409 putative phage integrase
YP_985875.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_2204 short-chain dehydrogenase/reductase SDR
YP_985876.1	PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_2758 extracellular solute-binding protein, family 1
YP_985877.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_985878.1	KEGG: pol:Bpro_3349 hypothetical protein
YP_985879.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_985880.1	PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1863 alpha/beta hydrolase fold
YP_985881.1	PFAM: Class I peptide chain release factor; KEGG: pol:Bpro_1858 class I peptide chain release factor
YP_985882.1	PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: pol:Bpro_1860 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B
YP_985883.1	PFAM: phospholipase/Carboxylesterase; KEGG: pol:Bpro_1861 phospholipase/carboxylesterase
YP_985884.1	KEGG: rfr:Rfer_1149 hypothetical protein
YP_985885.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_3830 transcriptional regulator, AsnC family
YP_985886.1	paralogs to the E1 component of pyruvate dehydrogenase subunit E1
YP_985887.1	PFAM: protein of unknown function DUF980; KEGG: pol:Bpro_2870 protein of unknown function DUF980
YP_985888.1	TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: pol:Bpro_2869 metallophosphoesterase
YP_985889.1	PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: pol:Bpro_2868 peptidyl-prolyl cis-trans isomerase, cyclophilin type
YP_985890.1	PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: rso:RSc1165 probable peptidyl-prolyl cis-trans isomerase A (PPIase A)(rotamase A)(CypH) signal peptide protein
YP_985891.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pol:Bpro_2866 tetratricopeptide TPR_2
YP_985892.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_985893.1	PFAM: HhH-GPD family protein; KEGG: rfr:Rfer_1350 HhH-GPD
YP_985894.1	TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase, alpha subunit; KEGG: pol:Bpro_2863 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
YP_985895.1	TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: rfr:Rfer_1352 tRNA(Ile)-lysidine synthetase-like
YP_985896.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_985897.1	KEGG: rfr:Rfer_1219 hypothetical protein
YP_985898.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_985899.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bte:BTH_I1605 transcriptional regulator MetR
YP_985900.1	KEGG: bur:Bcep18194_B1614 PEP phosphonomutase
YP_985901.1	TIGRFAM: putative AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: xcv:XCV1160 hypothetical protein
YP_985902.1	catalyzes the conversion of citrate to isocitrate
YP_985903.1	catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity
YP_985904.1	PFAM: thioesterase superfamily protein; KEGG: rpc:RPC_3513 thioesterase superfamily
YP_985905.1	PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: rru:Rru_A2316 transcriptional regulator, XRE family
YP_985907.1	PFAM: RNA-binding S4 domain protein; KEGG: pol:Bpro_2006 RNA-binding S4
YP_985908.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; KEGG: pol:Bpro_2007 periplasmic sensor signal transduction histidine kinase
YP_985909.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_2008 two component transcriptional regulator, winged helix family
YP_985910.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2009 uncharacterized protein UPF0065
YP_985911.1	KEGG: pol:Bpro_2010 hypothetical protein
YP_985912.1	PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_2011 protein of unknown function DUF112, transmembrane
YP_985913.1	KEGG: bxe:Bxe_B2979 sigma54 specific transcriptional regulator containing PAS, fis family
YP_985914.1	PFAM: alpha/beta hydrolase fold; KEGG: bpe:BP3623 putative hydrolase
YP_985915.1	PFAM: Rhodanese domain protein; KEGG: pol:Bpro_1362 rhodanese-like
YP_985917.1	PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: rsp:RSP_2739 hypothetical protein
YP_985918.1	PFAM: Rhodanese domain protein; KEGG: rsp:RSP_2738 probable rhodanese-related sulfurtransferase
YP_985919.1	PFAM: ferrochelatase; KEGG: pol:Bpro_2013 ferrochelatase
YP_985920.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_2014 HAD-superfamily hydrolase subfamily IA, variant 3
YP_985921.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: pae:PA1429 probable cation-transporting P-type ATPase
YP_985922.1	PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_3159 alpha/beta hydrolase
YP_985923.1	catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol
YP_985924.1	PFAM: CBS domain containing protein; KEGG: pol:Bpro_1837 CBS domain
YP_985925.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_985926.1	PFAM: ATP-cone domain protein; KEGG: pol:Bpro_2875 protein of unknown function DUF193
YP_985927.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_985928.1	PFAM: Lytic transglycosylase, catalytic; KEGG: pol:Bpro_2873 lytic transglycosylase, catalytic
YP_985929.1	PFAM: protein of unknown function DUF748; KEGG: pol:Bpro_2872 protein of unknown function DUF748
YP_985930.1	KEGG: rfr:Rfer_2656 hypothetical protein
YP_985931.1	TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pol:Bpro_2177 transcriptional regulator, BadM/Rrf2 family
YP_985933.1	PFAM: N-formylglutamate amidohydrolase; KEGG: rme:Rmet_2850 N-formylglutamate amidohydrolase
YP_985935.1	catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine
YP_985936.1	PFAM: CBS domain containing protein; HPP family protein+B94; KEGG: pol:Bpro_0211 CBS domain containing membrane protein
YP_985937.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_985939.1	PFAM: protein of unknown function DUF1624; KEGG: rfr:Rfer_2413 protein of unknown function DUF1624
YP_985940.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: rfr:Rfer_2399 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_985941.1	PFAM: BolA family protein; KEGG: pol:Bpro_2584 BolA-like protein
YP_985942.1	Involved in cell division; probably involved in intracellular septation
YP_985943.1	KEGG: pol:Bpro_2582 protein-methionine-S-oxide reductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B
YP_985944.1	PFAM: protein of unknown function UPF0061; KEGG: rfr:Rfer_2395 protein of unknown function UPF0061
YP_985945.1	activates fatty acids by binding to coenzyme A
YP_985946.1	PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_2391 extracellular ligand-binding receptor
YP_985947.1	PFAM: inner-membrane translocator; KEGG: rfr:Rfer_2390 inner-membrane translocator
YP_985948.1	PFAM: inner-membrane translocator; KEGG: rfr:Rfer_2389 inner-membrane translocator
YP_985949.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2575 ABC transporter related
YP_985950.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_2574 ABC transporter related
YP_985951.1	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: pol:Bpro_2573 3-hydroxyacyl-CoA dehydrogenase, NAD-binding
YP_985952.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_985953.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aae:aq_035 hypothetical protein
YP_985954.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rfr:Rfer_2384 acyl-CoA dehydrogenase-like
YP_985955.1	KEGG: reu:Reut_B3490 NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase
YP_985956.1	TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dar:Daro_1824 phosphonate uptake transporter
YP_985957.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_1825 ABC transporter related
YP_985958.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: dar:Daro_1826 phosphonate-binding periplasmic protein
YP_985959.1	PFAM: major facilitator superfamily MFS_1; KEGG: bha:BH2694 transporter
YP_985960.1	PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_4140 extracellular ligand-binding receptor
YP_985961.1	Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate
YP_985962.1	TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_2566 phenylacetic acid degradation-related protein
YP_985963.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rfr:Rfer_2491 alcohol dehydrogenase, zinc-binding
YP_985964.1	PFAM: GCN5-related N-acetyltransferase; KEGG: xcb:XC_0671 ElaA protein
YP_985965.1	KEGG: rfr:Rfer_2490 putative glutathione S-transferase-related protein
YP_985966.1	probable dehydrogenase
YP_985967.1	PFAM: protein of unknown function DUF1566; KEGG: pha:PSHAa2268 Fimh-like protein
YP_985968.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: ret:RHE_PE00015 putative drug transporter protein, Bcr/CflA subfamily
YP_985969.1	PFAM: major facilitator superfamily MFS_1; KEGG: yps:YPTB2369 MFS superfamily multidrug efflux transporter
YP_985970.1	PFAM: protein of unknown function DUF72; KEGG: rso:RSc0765 hypothetical protein
YP_985971.1	KEGG: reu:Reut_A1851 hypothetical protein
YP_985972.1	PFAM: protein of unknown function DUF88; KEGG: dde:Dde_2484 hypothetical protein
YP_985973.1	PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: pol:Bpro_2537 RNA binding S1
YP_985974.1	PFAM: HDOD; KEGG: rfr:Rfer_2482 putative signal transduction protein
YP_985975.1	KEGG: ppu:PP_2344 hypothetical protein
YP_985976.1	PFAM: histidine kinase, HAMP region domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: sus:Acid_0021 multi-sensor signal transduction histidine kinase
YP_985977.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: pol:Bpro_2526 iron-containing alcohol dehydrogenase
YP_985978.1	PFAM: Hydratase/decarboxylase; KEGG: dar:Daro_4183 hydratase/decarboxylase
YP_985979.1	PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: pol:Bpro_2525 alpha/beta hydrolase fold-3
YP_985980.1	PFAM: GCN5-related N-acetyltransferase; thioesterase superfamily protein; KEGG: pol:Bpro_2524 4-hydroxybenzoyl-CoA thioesterase
YP_985981.1	PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: rfr:Rfer_2253 glycine cleavage T protein (aminomethyl transferase)
YP_985982.1	PFAM: aminodeoxychorismate lyase; KEGG: rfr:Rfer_2254 aminodeoxychorismate lyase
YP_985983.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_985984.1	KEGG: rfr:Rfer_2256 DNA-directed DNA polymerase
YP_985985.1	PFAM: type IV pilus assembly PilZ; KEGG: pol:Bpro_2517 type IV pilus assembly PilZ
YP_985986.1	TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: rfr:Rfer_2258 TatD-related deoxyribonuclease
YP_985987.1	PFAM: Ankyrin; KEGG: pol:Bpro_2515 ankyrin
YP_985988.1	KEGG: pol:Bpro_1979 lipid A export ATP-binding/permease protein MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase
YP_985989.1	forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
YP_985990.1	TIGRFAM: TonB box domain protein; PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_1985 OmpA/MotB
YP_985991.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rfr:Rfer_2094 tetratricopeptide TPR_2
YP_985992.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: rfr:Rfer_2095 UBA/ThiF-type NAD/FAD binding protein
YP_985994.1	KEGG: eba:ebB20 hypothetical protein
YP_985996.1	KEGG: tbd:Tbd_2678 hypothetical protein
YP_985999.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein
YP_986000.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase
YP_986001.1	KEGG: pol:Bpro_1938 integrase, catalytic region
YP_986002.1	KEGG: pol:Bpro_1532 hypothetical protein
YP_986003.1	KEGG: xcv:XCVc0009 transposase, mutator family
YP_986004.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902
YP_986005.1	KEGG: bxe:Bxe_A3305 hypothetical protein
YP_986006.1	PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: pol:Bpro_2278 lytic transglycosylase, catalytic
YP_986007.1	PFAM: beta-lactamase domain protein; KEGG: rfr:Rfer_1462 hydroxyacylglutathione hydrolase
YP_986008.1	PFAM: Methyltransferase type 11; KEGG: pol:Bpro_2280 hypothetical protein
YP_986009.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_986010.1	PFAM: Thioredoxin domain; KEGG: pae:PA2694 probable thioredoxin
YP_986011.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: rfr:Rfer_1466 MoeA-like, domain I and II
YP_986012.1	in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis
YP_986013.1	together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
YP_986014.1	KEGG: dar:Daro_3326 hypothetical protein
YP_986015.1	PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase
YP_986016.1	PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase
YP_986017.1	PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein
YP_986018.1	KEGG: bxe:Bxe_A3516 putative transposase
YP_986019.1	KEGG: pol:Bpro_2081 hypothetical protein
YP_986020.1	PFAM: aldehyde dehydrogenase; KEGG: pol:Bpro_2290 aldehyde dehydrogenase (NAD+)
YP_986021.1	pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient
YP_986022.1	PFAM: Inorganic pyrophosphatase; KEGG: pol:Bpro_2300 inorganic diphosphatase
YP_986023.1	PFAM: CheW domain protein; KEGG: rfr:Rfer_1476 CheW protein
YP_986024.1	PFAM: protein of unknown function DUF482; KEGG: pol:Bpro_2308 protein of unknown function DUF482
YP_986025.1	KEGG: rfr:Rfer_1699 NAD+ synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase
YP_986026.1	PFAM: nitrogen regulatory protein P-II; KEGG: rfr:Rfer_1700 nitrogen regulatory protein P-II (GlnB, GlnK)
YP_986027.1	PFAM: conserved hypothetical protein 730; KEGG: pol:Bpro_2311 conserved hypothetical protein 730
YP_986028.1	PFAM: diacylglycerol kinase; KEGG: pol:Bpro_2312 diacylglycerol kinase
YP_986029.1	PFAM: RDD domain containing protein; KEGG: rfr:Rfer_3318 RDD
YP_986030.1	KEGG: pol:Bpro_2314 putative transmembrane protein
YP_986031.1	KEGG: pol:Bpro_2315 putative transmembrane protein
YP_986032.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_986033.1	acetolactate synthase large subunit; catalyzes the formation of 2-acetolactate from pyruvate
YP_986034.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_986035.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_986036.1	KEGG: pol:Bpro_2320 CDP-diacylglycerol--serine O-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_986037.1	KEGG: pol:Bpro_2321 2-isopropylmalate synthase; TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain
YP_986038.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_986039.1	PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: pol:Bpro_2323 peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
YP_986040.1	PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_2324 transcriptional regulator, IclR family
YP_986041.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_3328 acyl-CoA dehydrogenase-like
YP_986042.1	PFAM: aminoglycoside phosphotransferase; KEGG: rfr:Rfer_3327 aminoglycoside phosphotransferase
YP_986043.1	PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: pol:Bpro_2959 transcriptional regulator, Crp/Fnr family
YP_986044.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pol:Bpro_2958 enoyl-CoA hydratase/isomerase
YP_986045.1	converts 3-hydroxyadipyl-CoA to beta-ketoadipyl-CoA in phenylacetate degradation
YP_986046.1	KEGG: rfr:Rfer_3583 hypothetical protein
YP_986047.1	KEGG: rfr:Rfer_2467 thiamine-phosphate diphosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase
YP_986048.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_986049.1	TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: rfr:Rfer_2465 thiamine biosynthesis protein ThiS
YP_986050.1	PFAM: FAD dependent oxidoreductase; KEGG: rfr:Rfer_2464 FAD dependent oxidoreductase
YP_986051.1	TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: mfa:Mfla_0997 phosphomethylpyrimidine kinase
YP_986052.1	PFAM: protein of unknown function DUF1058; SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: dps:DP2276 hypothetical protein
YP_986053.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rme:Rmet_2452 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_986054.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: pol:Bpro_2334 4Fe-4S ferredoxin, iron-sulfur binding
YP_986055.1	KEGG: rfr:Rfer_2460 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding
YP_986056.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_986057.1	PFAM: phosphoadenosine phosphosulfate reductase; KEGG: mfa:Mfla_1679 phosphoadenosine phosphosulfate reductase
YP_986058.1	PFAM: Uncharacterised conserved protein UCP030820; KEGG: rfr:Rfer_2457 uncharacterised conserved protein UCP030820
YP_986059.1	PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: pol:Bpro_2339 nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like
YP_986060.1	PFAM: FAD dependent oxidoreductase; protein of unknown function DUF752; KEGG: pol:Bpro_2343 protein of unknown function DUF752
YP_986061.1	PFAM: protein of unknown function UPF0126; KEGG: dar:Daro_3213 hypothetical protein
YP_986062.1	PFAM: Fe(II) trafficking protein YggX; KEGG: rfr:Rfer_2102 Fe(II) trafficking protein YggX
YP_986063.1	TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2345 thiosulphate-binding protein
YP_986064.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: bxe:Bxe_B0273 putative glutathione S-transferase
YP_986065.1	PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: cvi:CV3481 deoxyribodipyrimidine photo-lyase
YP_986066.1	PFAM: phage integrase family protein; KEGG: rru:Rru_A3316 phage integrase
YP_986067.1	PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; KEGG: bte:BTH_I3231 transposon Tn2501 resolvase
YP_986070.1	PFAM: helix-turn-helix domain protein; KEGG: spt:SPA4290 subunit S of type I restriction-modification system
YP_986072.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_2419 short-chain dehydrogenase/reductase SDR
YP_986073.1	PFAM: extracellular solute-binding protein, family 5; KEGG: rfr:Rfer_2128 extracellular solute-binding protein, family 5
YP_986074.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2129 binding-protein-dependent transport systems inner membrane component
YP_986075.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2130 binding-protein-dependent transport systems inner membrane component
YP_986076.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_2423 ABC transporter related
YP_986077.1	KEGG: pol:Bpro_3517 putative lipoprotein
YP_986078.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pol:Bpro_4876 hydroxypyruvate isomerase
YP_986079.1	PFAM: UspA domain protein; KEGG: bbr:BB3577 hypothetical protein
YP_986080.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bpe:BP1820 probable LysR-family transcriptional regulator
YP_986081.1	PFAM: protein of unknown function DUF1446; KEGG: bbr:BB3206 hypothetical protein
YP_986082.1	KEGG: bbr:BB3205 hypothetical protein
YP_986083.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B5400 hypothetical protein
YP_986084.1	PFAM: protein of unknown function UPF0118; KEGG: pae:PA2651 hypothetical protein
YP_986085.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_986086.1	TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: pol:Bpro_2623 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
YP_986087.1	E3 component of 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_986088.1	PFAM: AFG1-family ATPase; KEGG: pol:Bpro_2621 AFG1-like ATPase
YP_986089.1	KEGG: pol:Bpro_2620 hypothetical protein
YP_986090.1	PFAM: protein phosphatase 2C domain protein; KEGG: pol:Bpro_2619 protein serine/threonine phosphatases
YP_986091.1	SMART: helicase c2; KEGG: rfr:Rfer_2316 helicase C2
YP_986092.1	KEGG: pol:Bpro_2616 putative transmembrane protein
YP_986093.1	KEGG: rfr:Rfer_2040 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein
YP_986094.1	involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA
YP_986095.1	KEGG: pol:Bpro_2940 ATPase AAA-2; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase
YP_986096.1	PFAM: regulatory protein, TetR; KEGG: eba:ebA6247 transcriptional regulator, TetR family
YP_986097.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA6248 hypothetical protein
YP_986098.1	PFAM: protein of unknown function DUF214; KEGG: net:Neut_1935 protein of unknown function DUF214
YP_986099.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1359 ABC transporter ATPase
YP_986100.1	TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rfr:Rfer_0327 lytic murein transglycosylase
YP_986101.1	Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates
YP_986102.1	PFAM: Silent information regulator protein Sir2; KEGG: xcb:XC_0318 NAD-dependent deacetylase
YP_986103.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: reu:Reut_A1778 helix-turn-helix, fis-type
YP_986104.1	KEGG: pol:Bpro_2487 hypothetical protein
YP_986105.1	PFAM: transposase Tn3 family protein; KEGG: pol:Bpro_2486 transposase Tn3
YP_986106.1	PFAM: Integrase, catalytic region; KEGG: pen:PSEEN3944 transposase, IS3 family (orf 2)
YP_986107.1	PFAM: transposase IS3/IS911 family protein; KEGG: pen:PSEEN3943 transposase, IS3 family (orf 1)
YP_986108.1	KEGG: dar:Daro_2621 hypothetical protein
YP_986109.1	PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1329 probable cobalt-zinc-cadmium outer membrane resistance protein
YP_986110.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rme:Rmet_5981 membrane fusion protein cluster 2
YP_986111.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rme:Rmet_5980 heavy metal efflux pump CzcA
YP_986112.1	KEGG: dar:Daro_2616 hypothetical protein
YP_986113.1	TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; KEGG: cvi:CV1153 probable transcriptional regulator, MerR family
YP_986114.1	PFAM: transposase Tn3 family protein; KEGG: pol:Bpro_2470 transposase Tn3
YP_986115.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein
YP_986116.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_1938 integrase, catalytic region
YP_986117.1	KEGG: eba:ebA2165 hypothetical protein
YP_986118.1	PFAM: sulfatase; protein of unknown function DUF1705; KEGG: ppu:PP_0024 membrane protein, putative
YP_986119.1	PFAM: Prophage CP4-57 regulatory; KEGG: bxe:Bxe_A2662 phage transcriptional regulator, AlpA
YP_986120.1	KEGG: pha:PSHAa0354 cell division transporter substrate-binding protein
YP_986121.1	KEGG: ter:Tery_0707 stress protein
YP_986123.1	KEGG: bxe:Bxe_A3516 putative transposase
YP_986124.1	KEGG: xom:XOO_2697 hypothetical protein
YP_986125.1	PFAM: Patatin; KEGG: nha:Nham_3555 patatin
YP_986126.1	KEGG: rpd:RPD_2132 hypothetical protein
YP_986127.1	PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: xoo:XOO1675 transposase
YP_986128.1	KEGG: reu:Reut_A3332 hypothetical protein
YP_986129.1	PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase
YP_986130.1	KEGG: sfr:Sfri_3475 hypothetical protein
YP_986131.1	KEGG: pol:Bpro_4633 PAP2 (acid phosphatase) superfamily protein-like
YP_986132.1	PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase
YP_986133.1	KEGG: fal:FRAAL1708 hypothetical protein
YP_986134.1	KEGG: bur:Bcep18194_A5506 hypothetical protein
YP_986135.1	KEGG: pol:Bpro_2470 transposase Tn3
YP_986136.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: sal:Sala_2582 heavy metal translocating P-type ATPase
YP_986137.1	PFAM: sodium/calcium exchanger membrane region; KEGG: dvu:DVU2617 sodium/calcium exchanger family protein
YP_986138.1	KEGG: bbr:BB0177 hypothetical protein
YP_986139.1	PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: rso:RS01673 putative integrase/recombinase protein
YP_986140.1	KEGG: pol:Bpro_2510 transcriptional regulator, XRE family
YP_986141.1	PFAM: protein of unknown function DUF891; KEGG: pol:Bpro_2509 protein of unknown function DUF891
YP_986142.1	PFAM: phage integrase family protein; KEGG: reu:Reut_A1625 phage integrase:phage integrase, N-terminal SAM-like
YP_986143.1	KEGG: reu:Reut_A1626 hypothetical protein
YP_986144.1	PFAM: protein of unknown function DUF779; KEGG: aeh:Mlg_2727 protein of unknown function DUF779
YP_986145.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bmb:BruAb1_0198 alcohol dehydrogenase, zinc-containing
YP_986146.1	PFAM: aldehyde dehydrogenase; KEGG: reu:Reut_B3678 aldehyde dehydrogenase (NAD+)
YP_986147.1	PFAM: Na+/Pi-cotransporter; KEGG: hch:HCH_00018 Na+/phosphate symporter
YP_986148.1	PFAM: protein of unknown function UPF0118; GAF domain protein; KEGG: nha:Nham_4144 putative GAF sensor protein
YP_986149.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_986150.1	PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pol:Bpro_3215 pyridoxal-5'-phosphate-dependent enzyme, beta subunit
YP_986151.1	flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine
YP_986152.1	Required for the expression of anaerobic nitric oxide (NO) reductase; acts as a transcriptional activator for the norVW operon
YP_986153.1	PFAM: protein of unknown function DUF853, NPT hydrolase putative; KEGG: pol:Bpro_1966 protein of unknown function DUF853, NPT hydrolase putative
YP_986154.1	PFAM: protein of unknown function DUF28; KEGG: rfr:Rfer_2075 protein of unknown function DUF28
YP_986155.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_986156.1	catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis
YP_986157.1	TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: pol:Bpro_1972 iojap-related protein
YP_986158.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_986159.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: pol:Bpro_1974 maf protein
YP_986160.1	PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rfr:Rfer_0060 transcriptional regulator, Crp/Fnr family
YP_986161.1	PFAM: cytochrome d1, heme region; KEGG: dar:Daro_3260 cytochrome d1, heme region
YP_986162.1	PFAM: Radical SAM domain protein; KEGG: tbd:Tbd_0071 elongator protein 3/MiaB/NifB
YP_986163.1	KEGG: dar:Daro_3267 regulatory proteins, AsnC/Lrp
YP_986164.1	KEGG: eba:ebA880 NirG protein precursor
YP_986165.1	KEGG: tbd:Tbd_0074 possible transcriptional regulator, AsnC family
YP_986166.1	PFAM: cytochrome d1, heme region; KEGG: eba:ebA883 NirF
YP_986167.1	KEGG: dar:Daro_3271 hypothetical protein
YP_986168.1	PFAM: cytochrome d1, heme region; KEGG: eba:ebA888 cytochrome cd1 nitrite reductase precursor
YP_986169.1	TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: net:Neut_1002 uroporphyrin-III C-methyltransferase
YP_986170.1	TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: rfr:Rfer_2082 ribonuclease, Rne/Rng family
YP_986171.1	catalyzes the transfer of an amino moiety
YP_986172.1	PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase
YP_986173.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_2112 transcriptional regulator, LysR family
YP_986174.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: rfr:Rfer_2113 cobalamin (vitamin B12) biosynthesis CbiX protein
YP_986175.1	PFAM: permease YjgP/YjgQ family protein; KEGG: rfr:Rfer_2114 permease YjgP/YjgQ
YP_986176.1	PFAM: permease YjgP/YjgQ family protein; KEGG: rfr:Rfer_2115 permease YjgP/YjgQ
YP_986177.1	PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: pol:Bpro_2408 leucyl aminopeptidase
YP_986178.1	PFAM: DNA polymerase III chi subunit, HolC; KEGG: rfr:Rfer_2117 DNA polymerase III chi subunit, HolC
YP_986179.1	KEGG: pol:Bpro_2410 hypothetical protein
YP_986180.1	PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase
YP_986181.1	PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_2411 extracellular ligand-binding receptor
YP_986182.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_2956 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_986183.1	KEGG: pol:Bpro_3461 hypothetical protein
YP_986184.1	KEGG: mxa:MXAN_6813 hypothetical protein
YP_986185.1	PFAM: UspA domain protein; KEGG: pol:Bpro_3459 UspA
YP_986186.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_4232 uncharacterized protein UPF0065
YP_986187.1	catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA
YP_986188.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bbr:BB2294 short chain dehydrogenase
YP_986189.1	PFAM: pseudouridine synthase; KEGG: pol:Bpro_3457 pseudouridine synthase
YP_986190.1	KEGG: rfr:Rfer_2766 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_986191.1	PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: pol:Bpro_1864 peptidylprolyl isomerase, FKBP-type
YP_986192.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine
YP_986193.1	TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: pol:Bpro_1867 glycine cleavage system H protein
YP_986194.1	TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; KEGG: pol:Bpro_1868 glycine cleavage system T protein
YP_986195.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_1869 TRAP dicarboxylate transporter-DctM subunit
YP_986196.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_1870 tripartite ATP-independent periplasmic transporter, DctQ component
YP_986197.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1871 TRAP dicarboxylate transporter, DctP subunit
YP_986198.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_4248 transcriptional regulator, AsnC family
YP_986199.1	PFAM: TonB-dependent receptor; KEGG: ngo:NGO2093 iron complex outermembrane recepter protein
YP_986200.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase
YP_986201.1	PFAM: TonB-dependent receptor, plug; KEGG: pat:Patl_3414 TonB-dependent receptor
YP_986202.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bpa:BPP2496 putative transcriptional regulator
YP_986203.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB3354 putative ABC-transporter ATP-binding component
YP_986204.1	PFAM: inner-membrane translocator; KEGG: pau:PA14_14380 putative transmembrane component of ABC transporte
YP_986205.1	PFAM: protein of unknown function DUF534; KEGG: pae:PA3836 hypothetical protein
YP_986206.1	PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; KEGG: rfr:Rfer_3018 electron-transferring-flavoprotein dehydrogenase
YP_986207.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: eca:ECA3642 methyl-accepting chemotaxis protein
YP_986208.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rsp:RSP_3086 periplasmic sensor signal transduction histidine kinase
YP_986209.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bpm:BURPS1710b_A0490 two component response regulator
YP_986210.1	KEGG: pol:Bpro_4633 PAP2 (acid phosphatase) superfamily protein-like
YP_986211.1	PFAM: sulfatase; protein of unknown function DUF1705; KEGG: pol:Bpro_3130 sulfatase
YP_986212.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: pol:Bpro_1899 uncharacterised peroxidase-related
YP_986213.1	PFAM: DTW domain containing protein; KEGG: tcx:Tcr_0863 DTW
YP_986214.1	PFAM: Catalase domain protein; KEGG: sco:SCO0379 catalase
YP_986215.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bbr:BB0958 putative NADH dehydrogenase
YP_986216.1	KEGG: pol:Bpro_1904 transcriptional regulator, LuxR family; TIGRFAM: PAS sensor protein; PFAM: regulatory protein, LuxR; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_986217.1	KEGG: pol:Bpro_1905 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase
YP_986218.1	KEGG: pol:Bpro_1906 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase
YP_986219.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: rfr:Rfer_2755 metal dependent phosphohydrolase
YP_986220.1	KEGG: pol:Bpro_3166 hypothetical protein
YP_986221.1	KEGG: rfr:Rfer_1225 hypothetical protein
YP_986222.1	KEGG: rfr:Rfer_1226 hypothetical protein
YP_986223.1	KEGG: rfr:Rfer_1227 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein
YP_986224.1	PFAM: Sel1 domain protein repeat-containing protein; KEGG: rpa:RPA0938 hypothetical protein
YP_986225.1	KEGG: rru:Rru_A0873 hypothetical protein
YP_986228.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA562 transposase
YP_986229.1	PFAM: phage integrase family protein; KEGG: net:Neut_0006 phage integrase family protein
YP_986230.1	KEGG: rfr:Rfer_0598 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase
YP_986231.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_986232.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_1673 diguanylate cyclase
YP_986233.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_986234.1	PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: rfr:Rfer_1905 glutamate--tRNA ligase
YP_986235.1	PFAM: FAD dependent oxidoreductase; KEGG: rfr:Rfer_1906 FAD dependent oxidoreductase
YP_986236.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_1907 transcriptional regulator, LysR family
YP_986237.1	PFAM: Pirin domain protein domain protein; Cupin 2, conserved barrel domain protein; KEGG: rfr:Rfer_2575 pirin-like
YP_986238.1	PFAM: DoxX family protein; KEGG: rfr:Rfer_2574 DoxX
YP_986239.1	Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate
YP_986240.1	leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys
YP_986241.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll1814 hypothetical protein
YP_986242.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: pol:Bpro_3421 glucarate dehydratase
YP_986243.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rme:Rmet_5274 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_986244.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B4644 hypothetical protein
YP_986245.1	catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate
YP_986246.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3101 uncharacterized protein UPF0065
YP_986247.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pfo:Pfl_0823 regulatory protein GntR, HTH
YP_986248.1	PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: pfo:Pfl_3283 mandelate racemase/muconate lactonizing enzyme
YP_986249.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_1635 uncharacterized protein UPF0065
YP_986250.1	PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: pol:Bpro_3104 galactarate dehydratase
YP_986251.1	PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: rso:RS05371 putative gluconolactonase precursor (D-glucono-delta-lactone lactonohydrolase) protein
YP_986252.1	PFAM: protein of unknown function DUF469; KEGG: psb:Psyr_2112 protein with unknown function DUF469
YP_986253.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_986255.1	KEGG: vpa:VP1564 hypothetical protein
YP_986256.1	PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein
YP_986257.1	KEGG: pol:Bpro_2471 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: TrkA-N domain protein; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding
YP_986258.1	KEGG: mlo:mlr7906 hypothetical protein
YP_986259.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: bbr:BB2630 probable acyl-CoA dehydrogenase
YP_986260.1	PFAM: protein of unknown function DUF1311; KEGG: stm:STM1123 putative periplasmic protein
YP_986261.1	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: xac:XAC1312 methylmalonate-semialdehyde dehydrogenase
YP_986262.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: bbr:BB3734 probable LysR-family transcriptional regulator
YP_986263.1	KEGG: tbd:Tbd_0731 hypothetical protein
YP_986264.1	PFAM: CBS domain containing protein; KEGG: pol:Bpro_2185 putative signal transduction protein with CBS domains
YP_986265.1	KEGG: pol:Bpro_2400 hypothetical protein
YP_986266.1	PFAM: glucose sorbosone dehydrogenase; KEGG: pol:Bpro_2666 glucose sorbosone dehydrogenase
YP_986267.1	PFAM: isochorismatase hydrolase; KEGG: rfr:Rfer_2323 isochorismatase hydrolase
YP_986268.1	catalyzes the formation of propionyl-CoA using propionate as a substrate; PrpE from Ralstonia solanacearum can produce acetyl-, propionyl-, butyryl- and acrylyl-coenzyme A, and Salmonella enterica produces propionyl- and butyryl-coenzyme A; not expressed in Escherichia coli when grown on propionate/minimal media; ATP-dependent
YP_986269.1	KEGG: ppu:PP_1983 sensory box protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_986270.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_3002 protein of unknown function DUF6, transmembrane
YP_986271.1	KEGG: pol:Bpro_1637 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase
YP_986272.1	PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; KEGG: pol:Bpro_1638 transcriptional regulator, AraC family
YP_986273.1	PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: rfr:Rfer_2999 phosphomannomutase
YP_986274.1	PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: pol:Bpro_1641 three-deoxy-D-manno-octulosonic-acid transferase-like
YP_986275.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_2352 GCN5-related N-acetyltransferase
YP_986276.1	KEGG: eba:ebB231 hypothetical protein
YP_986277.1	PFAM: bifunctional deaminase-reductase domain protein; KEGG: nfa:nfa6270 hypothetical protein
YP_986278.1	TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: pol:Bpro_1664 type I secretion outer membrane protein, TolC
YP_986279.1	SMART: Rhodanese domain protein; KEGG: rfr:Rfer_2603 rhodanese-like
YP_986280.1	PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: rfr:Rfer_2602 protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_986281.1	PFAM: regulatory protein, TetR; KEGG: pol:Bpro_1669 transcriptional regulator, TetR family
YP_986282.1	KEGG: pol:Bpro_1674 peptide methionine sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A
YP_986283.1	KEGG: pol:Bpro_1680 hypothetical protein
YP_986285.1	PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bpa:BPP0186 putative outer membrane protein
YP_986286.1	KEGG: eba:ebA6713 hypothetical protein
YP_986287.1	TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: pau:PA14_55740 putative chromate transport protein
YP_986288.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_2154 transcriptional regulator, AsnC family
YP_986289.1	PFAM: Saccharopine dehydrogenase; KEGG: bpe:BP3682 putative dehydrogenase
YP_986290.1	PFAM: AMP-dependent synthetase and ligase; KEGG: bja:blr1288 probable long-chain-fatty-acid-CoA ligase
YP_986291.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pol:Bpro_2160 transcriptional regulator, GntR family
YP_986292.1	MDM; functions in conversion of succinate to propionate
YP_986293.1	functions in transport of arginine/ornithine; inner membrane ATPase that cleaves ATP and phosphorylates two periplasmic proteins that function as two distinct transport systems, the AO (arginine and ornithine) and LAO (lysine, arginine, and ornithine) periplasmic binding proteins
YP_986294.1	PFAM: carboxyl transferase; KEGG: pol:Bpro_2164 carboxyl transferase
YP_986295.1	PFAM: biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: pol:Bpro_2167 carbamoyl-phosphate synthase L chain, ATP-binding
YP_986296.1	KEGG: pol:Bpro_2168 lactoylglutathione lyase
YP_986297.1	KEGG: rfr:Rfer_2292 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB
YP_986298.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_3536 short-chain dehydrogenase/reductase SDR
YP_986299.1	KEGG: pol:Bpro_3549 glyoxalase I; TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_986300.1	KEGG: rfr:Rfer_2061 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase
YP_986301.1	catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate
YP_986302.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: gka:GK1971 C4-dicarboxylate transport system (C4-dicarboxylate-binding protein)
YP_986303.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rsp:RSP_3662 TRAP-T family transporter, large (12TMs) inner membrane subunit
YP_986304.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_2839 tripartite ATP-independent periplasmic transporter, DctQ component
YP_986305.1	TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: pen:PSEEN2421 gluconokinase
YP_986306.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rfr:Rfer_0957 transcriptional regulator, LacI family
YP_986307.1	PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_3552 OmpA/MotB
YP_986308.1	PFAM: ChaC family protein; KEGG: pol:Bpro_3553 ChaC-like protein
YP_986309.1	PFAM: superoxide dismutase, copper/zinc binding; KEGG: pol:Bpro_3554 superoxide dismutase
YP_986310.1	KEGG: pol:Bpro_3559 pyridoxamine 5'-phosphate oxidase; TIGRFAM: pyridoxamine 5'-phosphate oxidase; PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding
YP_986311.1	PFAM: Auxin Efflux Carrier; KEGG: rfr:Rfer_2056 auxin efflux carrier
YP_986312.1	TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_2153 TIM-barrel protein, YjbN family
YP_986313.1	KEGG: bxe:Bxe_A3034 putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS/PAC and CHASE sensors; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein
YP_986314.1	PFAM: RelA/SpoT domain protein; KEGG: sth:STH1636 putative GTP pyrophosphokinase
YP_986315.1	TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: pol:Bpro_2173 polyhydroxyalkanoate depolymerase, intracellular
YP_986316.1	TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: pol:Bpro_2170 electron transport complex, RnfABCDGE type, B subunit
YP_986317.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2342 methyl-accepting chemotaxis sensory transducer
YP_986318.1	catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate
YP_986319.1	catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway
YP_986320.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pol:Bpro_1995 twitching motility protein
YP_986321.1	dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.
YP_986322.1	involved in methylation of ribosomal protein L3
YP_986323.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1992 ABC transporter related
YP_986324.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_986325.1	KEGG: pol:Bpro_2140 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase
YP_986326.1	TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rfr:Rfer_2562 poly(R)-hydroxyalkanoic acid synthase, class I
YP_986327.1	KEGG: rfr:Rfer_2563 hypothetical protein
YP_986328.1	PFAM: protein of unknown function DUF152; KEGG: rfr:Rfer_2564 protein of unknown function DUF152
YP_986329.1	TIGRFAM: maleylacetoacetate isomerase; PFAM: Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_2136 maleylacetoacetate isomerase
YP_986330.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rfr:Rfer_2567 fumarylacetoacetate (FAA) hydrolase
YP_986331.1	PFAM: NUDIX hydrolase; KEGG: pol:Bpro_2117 NUDIX hydrolase
YP_986332.1	PFAM: major facilitator superfamily MFS_1; KEGG: rso:RSc1445 probable transmembrane protein
YP_986333.1	PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: rme:Rmet_4835 glycosyl transferase, family 51
YP_986334.1	PFAM: Patatin; KEGG: nmu:Nmul_A0164 patatin
YP_986335.1	KEGG: rfr:Rfer_2201 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: Helix-hairpin-helix DNA-binding, class 1; NAD-dependent DNA ligase-like
YP_986336.1	KEGG: neu:NE2258 hypothetical protein
YP_986337.1	SMART: ZipA, C-terminal FtsZ-binding region; KEGG: rfr:Rfer_2200 hypothetical protein
YP_986338.1	TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: rfr:Rfer_2199 chromosome segregation protein SMC
YP_986339.1	PFAM: protein of unknown function UPF0060; KEGG: rme:Rmet_4032 protein of unknown function UPF0060
YP_986340.1	KEGG: rfr:Rfer_3250 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_986341.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bur:Bcep18194_C7674 ABC efflux pump, ATPase subunit
YP_986342.1	PFAM: major facilitator superfamily MFS_1; KEGG: rso:RS05323 probable transporter transmembrane protein
YP_986343.1	PFAM: NLP/P60 protein; KEGG: pol:Bpro_2667 peptidace C40 NLP/P60
YP_986344.1	PFAM: protein of unknown function DUF55; KEGG: bte:BTH_I0831 family of unknown function (DUF589) superfamily
YP_986345.1	PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: reu:Reut_C5900 NADP oxidoreductase, coenzyme F420-dependent:6-phosphogluconate dehydrogenase, NAD-binding:3-hydroxyacyl-CoA dehydrogenase, NAD-binding
YP_986346.1	PFAM: conserved hypothetical protein 95; KEGG: she:Shewmr4_1486 conserved hypothetical protein 95
YP_986347.1	KEGG: eba:ebB41 hypothetical protein
YP_986348.1	TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rfr:Rfer_2214 dihydrolipoamide dehydrogenase
YP_986349.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rpa:RPA3655 probable alcohol dehydrogenase
YP_986350.1	KEGG: reu:Reut_A1460 conserved hypothetical protein; putative signal peptide
YP_986351.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: pol:Bpro_5564 short-chain dehydrogenase/reductase SDR
YP_986352.1	PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: aeh:Mlg_0116 transposase, IS204/IS1001/IS1096/IS1165 family protein
YP_986353.1	KEGG: pol:Bpro_5565 flavin-containing monooxygenase FMO
YP_986354.1	KEGG: bmb:BruAb2_0725 hypothetical protein
YP_986355.1	PFAM: MgtC/SapB transporter; KEGG: bbr:BB4258 putative Mg(2+) transporter
YP_986356.1	PFAM: putative transposase; KEGG: sfx:S2705 putative transposase
YP_986357.1	PFAM: O-methyltransferase domain protein; KEGG: mlo:mll3178 hypothetical protein
YP_986358.1	KEGG: pau:PA14_04100 hypothetical protein
YP_986359.1	PFAM: extracellular solute-binding protein, family 3; KEGG: pau:PA14_04090 putative binding protein component of ABC transporter
YP_986360.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pau:PA14_04080 putative permease of ABC transporter
YP_986361.1	PFAM: protein of unknown function DUF523; KEGG: pau:PA14_04070 hypothetical protein
YP_986362.1	KEGG: pau:PA14_04060 hypothetical protein
YP_986363.1	KEGG: pau:PA14_04050 putative proline hydroxylase
YP_986364.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pen:PSEEN2040 pyridine nucleotide-disulphide oxidoreductase
YP_986365.1	TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: pen:PSEEN2041 transcriptional regulator
YP_986366.1	PFAM: putative transposase; KEGG: sfx:S2705 putative transposase
YP_986367.1	PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase
YP_986368.1	TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: rfr:Rfer_2214 dihydrolipoamide dehydrogenase
YP_986369.1	KEGG: pol:Bpro_2671 dihydrolipoamide acetyltransferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein
YP_986370.1	E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC
YP_986371.1	KEGG: pol:Bpro_2673 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_986372.1	PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: pol:Bpro_2674 two component transcriptional regulator, LuxR family
YP_986373.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_986374.1	PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: pol:Bpro_2855 oligopeptidase A
YP_986375.1	PFAM: glutaredoxin; KEGG: pol:Bpro_2856 glutaredoxin
YP_986376.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_986377.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors
YP_986379.1	KEGG: nmu:Nmul_A0655 hypothetical protein
YP_986380.1	PFAM: protein of unknown function DUF883, ElaB; KEGG: cvi:CV3467 transmembrane protein
YP_986381.1	PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_2706 FAD dependent oxidoreductase
YP_986382.1	PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_2707 histone deacetylase superfamily
YP_986383.1	KEGG: pol:Bpro_2184 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease
YP_986384.1	TIGRFAM: ferredoxin, 2Fe-2S type, ISC system; PFAM: ferredoxin; KEGG: pol:Bpro_2183 ferredoxin, 2Fe-2S type
YP_986385.1	involved in the maturation of iron-sulfur cluster-containing proteins
YP_986386.1	TIGRFAM: co-chaperone Hsc20; PFAM: heat shock protein DnaJ domain protein; HSCB oligomerisation domain protein; KEGG: rfr:Rfer_2180 co-chaperone Hsc20
YP_986387.1	TIGRFAM: iron-sulfur cluster assembly accessory protein; iron-sulfur cluster assembly protein IscA; PFAM: HesB/YadR/YfhF-family protein; KEGG: pol:Bpro_2180 iron-sulfur cluster assembly protein IscA
YP_986388.1	TIGRFAM: FeS cluster assembly scaffold IscU; PFAM: nitrogen-fixing NifU domain protein; KEGG: pol:Bpro_2179 FeS cluster assembly scaffold IscU
YP_986389.1	TIGRFAM: cysteine desulfurase IscS; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rfr:Rfer_2177 cysteine desulfurase IscS
YP_986390.1	TIGRFAM: putative transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: pol:Bpro_2177 transcriptional regulator, BadM/Rrf2 family
YP_986391.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase
YP_986392.1	PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: xoo:XOO1675 transposase
YP_986393.1	KEGG: bxe:Bxe_A3516 putative transposase
YP_986394.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_986395.1	catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate
YP_986396.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_3609 methyl-accepting chemotaxis sensory transducer
YP_986397.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rfr:Rfer_1333 L-carnitine dehydratase/bile acid-inducible protein F
YP_986398.1	PFAM: protein of unknown function DUF1294; KEGG: shm:Shewmr7_2883 protein of unknown function DUF1294
YP_986399.1	PFAM: transposase, mutator type; KEGG: net:Neut_0357 transposase, mutator type
YP_986400.1	PFAM: Integrase, catalytic region; KEGG: rme:Rmet_6282 integrase, catalytic region
YP_986401.1	KEGG: aeh:Mlg_1386 hypothetical protein
YP_986402.1	KEGG: aeh:Mlg_1384 hypothetical protein
YP_986403.1	PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dsy:DSY0852 hypothetical protein
YP_986404.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; HAD-superfamily hydrolase, subfamily IA, variant 3; beta-phosphoglucomutase family hydrolase; PFAM: trehalose-phosphatase; Haloacid dehalogenase domain protein hydrolase; KEGG: noc:Noc_1775 beta-phosphoglucomutase hydrolase
YP_986405.1	PFAM: glycoside hydrolase, family 65 domain protein; glycoside hydrolase family 65, central catalytic; glycoside hydrolase family 65 domain protein; KEGG: noc:Noc_1775 beta-phosphoglucomutase hydrolase
YP_986406.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; alanine dehydrogenase/PNT domain protein; KEGG: mes:Meso_3888 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_986407.1	TIGRFAM: phosphoenolpyruvate synthase; PFAM: PEP-utilizing enzyme; pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; KEGG: noc:Noc_1446 phosphoenolpyruvate synthase
YP_986408.1	catalyzes the formation of 3-phospho-D-glycerol phosphate from D-glyceraldehyde 3-phosphate in glycolysis
YP_986409.1	PFAM: regulatory protein, TetR; KEGG: bam:Bamb_4737 transcriptional regulator, TetR family
YP_986410.1	PFAM: LysR, substrate-binding; KEGG: eba:ebA2490 transcriptional regulator
YP_986411.1	KEGG: mag:amb3764 hypothetical protein
YP_986412.1	PFAM: Integrase, catalytic region; KEGG: nha:Nham_4579 integrase, catalytic region
YP_986413.1	PFAM: TniB family protein; KEGG: rme:Rmet_4973 TniB
YP_986414.1	KEGG: mes:Meso_4392 hypothetical protein
YP_986415.1	PFAM: helix-turn-helix domain protein; KEGG: eba:ebA2491 hypothetical protein
YP_986416.1	PFAM: protein of unknown function DUF1528; Relaxase; KEGG: eba:ebA2492 hypothetical protein
YP_986417.1	KEGG: xcb:XC_1037 hypothetical protein
YP_986418.1	KEGG: xcb:XC_1038 hypothetical protein
YP_986419.1	KEGG: net:Neut_0072 conserved hypothetical protein
YP_986420.1	KEGG: eba:ebA2395 hypothetical protein
YP_986421.1	KEGG: eba:ebB79 hypothetical protein
YP_986422.1	KEGG: eba:ebA2510 hypothetical protein
YP_986423.1	PFAM: protein of unknown function DUF1527; KEGG: eba:ebA2511 hypothetical protein
YP_986424.1	PFAM: protein of unknown function DUF1525; KEGG: eba:ebB80 hypothetical protein
YP_986425.1	PFAM: DNA repair protein RadC; KEGG: eba:ebA2514 DNA repair protein similar to radC-family
YP_986426.1	KEGG: eba:ebA2405 hypothetical protein
YP_986427.1	KEGG: eba:ebA2406 hypothetical protein
YP_986428.1	KEGG: eba:ebA2407 hypothetical protein
YP_986429.1	KEGG: eba:ebA2408 hypothetical protein
YP_986430.1	KEGG: eba:ebA2409 hypothetical protein
YP_986431.1	KEGG: eba:ebA2410 hypothetical protein
YP_986432.1	KEGG: eba:ebB69 hypothetical protein
YP_986433.1	KEGG: eba:ebB70 hypothetical protein
YP_986434.1	KEGG: xcv:XCV2374 hypothetical protein
YP_986435.1	KEGG: eba:ebA2412 hypothetical protein
YP_986436.1	TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: sde:Sde_2760 putative transcriptional regulator
YP_986437.1	KEGG: ter:Tery_4678 DNA-cytosine methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase
YP_986438.1	KEGG: rha:RHA1_ro04148 probable very short patch repair protein
YP_986439.1	PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bps:BPSL0763 putative helicase SNF2 family protein
YP_986440.1	KEGG: bps:BPSL0764 hypothetical protein
YP_986441.1	PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: xoo:XOO1675 transposase
YP_986442.1	KEGG: ava:Ava_C0223 hypothetical protein
YP_986443.1	KEGG: nma:NMA0428 hypothetical protein
YP_986444.1	PFAM: helicase domain protein; KEGG: bps:BPSL0765 putative helicase family protein
YP_986445.1	KEGG: bps:BPSL0766 hypothetical protein
YP_986446.1	PFAM: phospholipase D/Transphosphatidylase; KEGG: bps:BPSL0767 putative phospholipase protein
YP_986447.1	KEGG: ade:Adeh_3541 hypothetical protein
YP_986448.1	KEGG: eba:ebA2420 hypothetical protein
YP_986449.1	KEGG: eba:ebA2421 hypothetical protein
YP_986450.1	KEGG: eba:ebA2423 hypothetical protein
YP_986451.1	PFAM: Lytic transglycosylase, catalytic; KEGG: eba:ebA2424 hypothetical protein
YP_986452.1	KEGG: xcv:XCV2380 putative secreted protein
YP_986453.1	KEGG: eba:ebA2426 hypothetical protein
YP_986454.1	KEGG: bxe:Bxe_A1200 hypothetical protein
YP_986455.1	KEGG: nmu:Nmul_B2805 transcriptional regulator, XRE family
YP_986456.1	KEGG: vvy:VV2237 hypothetical protein
YP_986457.1	KEGG: tfu:Tfu_0717 hypothetical protein
YP_986458.1	KEGG: bms:BRA0377 hypothetical protein
YP_986459.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dsy:DSY2854 hypothetical protein
YP_986460.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: ppu:PP_3868 group II intron-encoding maturase
YP_986461.1	PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: eba:ebA2431 conserved plasmid related protein
YP_986462.1	KEGG: eba:ebB75 hypothetical protein
YP_986463.1	KEGG: eba:ebA2433 conserved hypothetical plasmid protein
YP_986464.1	KEGG: bxe:Bxe_A1204 hypothetical protein
YP_986465.1	KEGG: rme:Rmet_2324 hypothetical protein
YP_986466.1	KEGG: eba:ebA2436 hypothetical protein
YP_986467.1	KEGG: eba:ebA2440 hypothetical protein
YP_986468.1	KEGG: eba:ebB76 hypothetical protein
YP_986469.1	KEGG: eba:ebA2454 hypothetical protein
YP_986470.1	KEGG: net:Neut_0113 conserved hypothetical protein
YP_986471.1	KEGG: eba:ebA2455 hypothetical protein
YP_986472.1	KEGG: bxe:Bxe_A1220 hypothetical protein
YP_986473.1	decatenates replicating daughter chromosomes
YP_986474.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_986475.1	KEGG: eba:ebA2461 hypothetical protein
YP_986476.1	KEGG: eba:ebA2462 hypothetical protein
YP_986477.1	KEGG: rru:Rru_A3537 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
YP_986478.1	TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: plu:plu2210 hypothetical protein
YP_986479.1	TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: aba:Acid345_2090 RelB antitoxin
YP_986480.1	PFAM: transposase Tn3 family protein; KEGG: rme:Rmet_1544 transposase Tn3
YP_986481.1	KEGG: pol:Bpro_2151 hypothetical protein
YP_986482.1	PFAM: Radical SAM domain protein; Radical SAM N-terminal domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rfr:Rfer_2734 radical SAM
YP_986483.1	PFAM: protein of unknown function UPF0029; KEGG: dar:Daro_1379 hypothetical protein
YP_986484.1	Catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_986486.1	PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_1468 FAD dependent oxidoreductase
YP_986487.1	PFAM: Amidase; KEGG: pol:Bpro_3826 amidase
YP_986488.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3827 uncharacterized protein UPF0065
YP_986489.1	catalyzes the formation of pyruvate from serine
YP_986490.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: reu:Reut_A2914 regulatory protein, LysR:LysR, substrate-binding
YP_986491.1	PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_4900 transcriptional regulator, XRE family
YP_986492.1	PFAM: HipA domain protein; KEGG: rme:Rmet_4901 HipA-like protein
YP_986493.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: ava:Ava_4466 transcriptional regulator, LysR family
YP_986494.1	PFAM: protein of unknown function DUF897; KEGG: chu:CHU_2730 permease
YP_986495.1	PFAM: Ankyrin; KEGG: bxe:Bxe_B1343 ankyrin domain protein
YP_986496.1	PFAM: small multidrug resistance protein; KEGG: mfa:Mfla_1027 small multidrug resistance protein
YP_986497.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: reu:Reut_A0050 5-carboxymethyl-2-hydroxymuconate delta-isomerase
YP_986498.1	PFAM: Chromate transporter; KEGG: rfr:Rfer_2756 chromate transporter
YP_986499.1	PFAM: Chromate transporter; KEGG: rfr:Rfer_2757 chromate transporter
YP_986500.1	PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; KEGG: rso:RSp1191 probable 3,4-dihydroxy-2-butanone 4-phosphate synthase protein
YP_986501.1	PFAM: Silent information regulator protein Sir2; KEGG: reu:Reut_A2070 silent information regulator protein Sir2
YP_986502.1	PFAM: regulatory protein, TetR; KEGG: pol:Bpro_4769 transcriptional regulator, TetR family
YP_986503.1	PFAM: protein of unknown function DUF1428; KEGG: lpp:lpp2085 hypothetical protein
YP_986504.1	PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: nha:Nham_3665 3-demethylubiquinone-9 3-methyltransferase
YP_986505.1	PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mlo:mlr2292 hypothetical protein
YP_986506.1	PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: gme:Gmet_2483 3-demethylubiquinone-9 3-methyltransferase
YP_986507.1	TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: pol:Bpro_3029 RNA methyltransferase TrmH, group 3
YP_986508.1	involved in the import of serine and threonine coupled with the import of sodium
YP_986509.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_2425 ABC transporter related
YP_986510.1	PFAM: lipolytic enzyme, G-D-S-L family; KEGG: rfr:Rfer_2424 lipolytic enzyme, G-D-S-L
YP_986511.1	KEGG: rfr:Rfer_3771 integral membrane protein
YP_986512.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; KEGG: rfr:Rfer_2294 Cys/Met metabolism pyridoxal-phosphate-dependent enzymes
YP_986513.1	PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_0874 transport-associated
YP_986514.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: eba:ebA4484 putative sulfate transporter
YP_986515.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rfr:Rfer_1305 diguanylate cyclase
YP_986516.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rfr:Rfer_1304 cobyrinic acid a,c-diamide synthase
YP_986517.1	PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: pol:Bpro_2897 pirin-like
YP_986518.1	PFAM: OsmC family protein; KEGG: pol:Bpro_2898 OsmC-like protein
YP_986519.1	PFAM: peptidase U61, LD-carboxypeptidase A; KEGG: pol:Bpro_2448 muramoyltetrapeptide carboxypeptidase
YP_986520.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: pol:Bpro_2447 CMP/dCMP deaminase, zinc-binding
YP_986521.1	KEGG: rfr:Rfer_2809 hypothetical protein
YP_986522.1	PFAM: sodium/glutamate symporter; KEGG: aci:ACIAD0804 sodium/glutamate symport carrier protein
YP_986523.1	PFAM: peptidase U32; KEGG: rfr:Rfer_2414 peptidase U32
YP_986524.1	KEGG: reu:Reut_B4968 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase
YP_986525.1	PFAM: protein of unknown function DUF323; KEGG: bbr:BB1966 hypothetical protein
YP_986526.1	KEGG: rfr:Rfer_1610 putative uncharacterized conserved protein
YP_986527.1	PFAM: OmpW family protein; OmpF family protein; KEGG: pol:Bpro_0280 OmpW
YP_986528.1	PFAM: protein of unknown function DUF808; KEGG: pen:PSEEN1676 hypothetical protein
YP_986529.1	KEGG: fra:Francci3_4182 hypothetical protein
YP_986530.1	KEGG: bpm:BURPS1710b_2462 hypothetical protein
YP_986531.1	KEGG: pol:Bpro_2587 methionine aminopeptidase, type I; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24
YP_986532.1	catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein
YP_986533.1	KEGG: pol:Bpro_2590 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase
YP_986534.1	PFAM: protein of unknown function DUF454; KEGG: xcb:XC_0660 hypothetical protein
YP_986535.1	Converts isocitrate to alpha ketoglutarate
YP_986536.1	KEGG: rfr:Rfer_2762 protein tyrosine phosphatase, receptor type, F-like
YP_986537.1	PFAM: protein of unknown function DUF192; KEGG: pol:Bpro_2944 protein of unknown function DUF192
YP_986538.1	KEGG: cvi:CV3664 probable isocitrate dehydrogenase (NADP); TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type
YP_986539.1	PFAM: manganese and iron superoxide dismutase; KEGG: pol:Bpro_2945 superoxide dismutase
YP_986540.1	KEGG: rfr:Rfer_3152 exodeoxyribonuclease VII, large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type
YP_986541.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_2947 MotA/TolQ/ExbB proton channel
YP_986542.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_2948 biopolymer transport protein ExbD/TolR
YP_986543.1	transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate
YP_986544.1	PFAM: protein of unknown function DUF343; KEGG: pol:Bpro_2950 protein of unknown function DUF343
YP_986545.1	KEGG: pol:Bpro_2951 3-deoxy-D-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase
YP_986546.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_986547.1	PFAM: Asparaginase/glutaminase; KEGG: pol:Bpro_2953 asparaginase
YP_986548.1	Represses a number of genes involved in the response to DNA damage
YP_986550.1	PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: rfr:Rfer_1441 pyridoxamine 5'-phosphate oxidase-related, FMN-binding
YP_986551.1	KEGG: rfr:Rfer_2106 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD-like helicases-like
YP_986552.1	PFAM: oxidoreductase domain protein; homoserine dehydrogenase, NAD-binding; SAF domain; KEGG: pol:Bpro_1713 oxidoreductase-like
YP_986553.1	PFAM: metallophosphoesterase; KEGG: eca:ECA1908 putative membrane-attached phosphoesterase
YP_986554.1	PFAM: nitroreductase; KEGG: bxe:Bxe_B0222 putative nitroreductase
YP_986555.1	KEGG: rpc:RPC_1050 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase
YP_986556.1	PFAM: AMP-dependent synthetase and ligase; KEGG: rpc:RPC_1049 AMP-dependent synthetase and ligase
YP_986557.1	PFAM: BioY protein; KEGG: rsp:RSP_2173 putative biotin biosynthesis protein BioY
YP_986558.1	PFAM: cobalt transport protein; KEGG: rsp:RSP_2174 putative ABC transporter, inner membrane subunit
YP_986559.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2175 ABC transporter, ATPase subunit
YP_986560.1	PFAM: major facilitator superfamily MFS_1; KEGG: rme:Rmet_2369 major facilitator superfamily MFS_1
YP_986561.1	KEGG: bba:Bd1787 hypothetical protein
YP_986562.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ade:Adeh_0453 methyltransferase type 12
YP_986563.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_3671 uncharacterized protein UPF0065
YP_986564.1	PFAM: acyltransferase 3; KEGG: sde:Sde_0174 acyltransferase-like
YP_986565.1	catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis
YP_986566.1	PFAM: beta-lactamase; KEGG: mes:Meso_2215 beta-lactamase
YP_986567.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sal:Sala_1903 transcriptional regulator, LysR family
YP_986568.1	KEGG: rfr:Rfer_0616 hypothetical protein
YP_986569.1	PFAM: PepSY-associated TM helix domain protein; KEGG: bpe:BP2921 hypothetical protein
YP_986570.1	PFAM: glutaredoxin; Glutathione S-transferase, N-terminal domain; KEGG: pol:Bpro_2938 glutathione S-transferase-like
YP_986571.1	PFAM: Disulphide bond formation protein DsbB; KEGG: rfr:Rfer_2104 disulphide bond formation protein DsbB
YP_986572.1	KEGG: pol:Bpro_2379 sulphate transport system permease protein 1; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_986573.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysW; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2378 sulfate ABC transporter, permease protein CysW
YP_986574.1	TIGRFAM: sulfate ABC transporter, inner membrane subunit; sulfate ABC transporter, inner membrane subunit CysT; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1761 sulfate ABC transporter, permease protein CysT
YP_986575.1	TIGRFAM: sulfate ABC transporter, periplasmic sulfate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: rfr:Rfer_1762 thiosulphate-binding protein
YP_986576.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2373 transcriptional regulator, LysR family
YP_986577.1	PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: pol:Bpro_2372 (acyl-carrier protein) phosphodiesterase
YP_986578.1	PFAM: NADPH-dependent FMN reductase; KEGG: rfr:Rfer_2368 NADPH-dependent FMN reductase
YP_986579.1	TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: rfr:Rfer_1770 lipoprotein YaeC
YP_986580.1	KEGG: bpa:BPP0392 hypothetical protein
YP_986581.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2368 binding-protein-dependent transport systems inner membrane component
YP_986582.1	part of the metNIQ transport system for methionine
YP_986583.1	PFAM: major facilitator superfamily MFS_1; KEGG: mmc:Mmcs_4056 major facilitator superfamily MFS_1
YP_986584.1	KEGG: pol:Bpro_2271 membrane protein-like
YP_986585.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_986586.1	PFAM: conserved hypothetical protein 103; KEGG: rfr:Rfer_1458 conserved hypothetical protein 103
YP_986587.1	KEGG: rfr:Rfer_1457 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase
YP_986590.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pol:Bpro_2266 HI0933-like protein
YP_986591.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mag:amb2135 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase
YP_986592.1	PFAM: UvrD/REP helicase; KEGG: pol:Bpro_2265 UvrD/REP helicase
YP_986593.1	KEGG: pol:Bpro_2264 RecB family exonuclease-like
YP_986594.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pol:Bpro_2263 thioredoxin
YP_986595.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_986596.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rme:Rmet_1686 RND efflux system, outer membrane lipoprotein, NodT
YP_986597.1	PFAM: secretion protein HlyD family protein; KEGG: mfa:Mfla_0168 secretion protein HlyD
YP_986598.1	PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: mfa:Mfla_0167 response regulator receiver domain protein (CheY-like)
YP_986599.1	PFAM: ABC-2 type transporter; KEGG: mfa:Mfla_0166 ABC-2
YP_986600.1	PFAM: ribosomal protein L31; KEGG: pol:Bpro_2261 ribosomal protein L31
YP_986601.1	KEGG: rfr:Rfer_2901 putative inner membrane transmembrane protein
YP_986602.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pol:Bpro_2259 MATE efflux family protein
YP_986603.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: rfr:Rfer_0577 multi-sensor signal transduction histidine kinase
YP_986604.1	TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_2257 two component transcriptional regulator, winged helix family
YP_986605.1	TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: pol:Bpro_2256 phosphate uptake regulator, PhoU
YP_986606.1	KEGG: pol:Bpro_2255 phosphate transport system permease protein 1; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_986607.1	Part of the ABC transporter complex PstABCS responsible for inorganic phosphate (Pi) uptake under Pi starvation conditions
YP_986608.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_2253 phosphate ABC transporter, permease protein PstC
YP_986609.1	TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pol:Bpro_2252 periplasmic phosphate binding protein
YP_986610.1	PFAM: beta-Ig-H3/fasciclin; KEGG: pol:Bpro_2251 beta-Ig-H3/fasciclin
YP_986611.1	KEGG: pol:Bpro_2250 twin-arginine translocation pathway signal
YP_986612.1	PFAM: Ppx/GppA phosphatase; KEGG: pol:Bpro_2249 Ppx/GppA phosphatase
YP_986613.1	KEGG: pol:Bpro_2248 hypothetical protein
YP_986614.1	PFAM: Phosphoglycerate mutase; KEGG: rfr:Rfer_2018 phosphohistidine phosphatase, SixA
YP_986615.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_986616.1	KEGG: rfr:Rfer_2028 hypothetical protein
YP_986617.1	KEGG: rfr:Rfer_3192 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_986618.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_986619.1	KEGG: rfr:Rfer_2012 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS
YP_986620.1	KEGG: rfr:Rfer_2011 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_986621.1	PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pol:Bpro_2853 ribosomal RNA methyltransferase RrmJ/FtsJ
YP_986622.1	PFAM: protein of unknown function UPF0044; KEGG: rfr:Rfer_2009 protein of unknown function UPF0044
YP_986623.1	KEGG: par:Psyc_1205 hypothetical protein
YP_986624.1	KEGG: bxe:Bxe_A3699 hypothetical protein
YP_986625.1	KEGG: rfr:Rfer_2008 hypothetical protein
YP_986626.1	TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: pol:Bpro_2677 GreA/GreB family elongation factor
YP_986627.1	TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: pol:Bpro_2678 carbamoyl-phosphate synthase, large subunit
YP_986629.1	TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: rfr:Rfer_2004 carbamoyl-phosphate synthase, small subunit
YP_986630.1	PFAM: regulatory protein, MerR; KEGG: pol:Bpro_2109 transcriptional regulator, MerR family
YP_986631.1	This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control
YP_986632.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_986633.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_986634.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_986635.1	PFAM: ribosomal protein L35; KEGG: pol:Bpro_2104 ribosomal protein L35
YP_986636.1	TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: rfr:Rfer_1337 translation initiation factor IF-3
YP_986637.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_986638.1	TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: rfr:Rfer_1335 isocitrate lyase
YP_986639.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_1956 protein of unknown function DUF6, transmembrane
YP_986640.1	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
YP_986641.1	PFAM: SWIB/MDM2 domain protein; KEGG: pol:Bpro_2811 SWIB complex, BAF60b
YP_986642.1	PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pol:Bpro_3050 hypothetical protein
YP_986643.1	TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: pol:Bpro_3051 TonB-like
YP_986644.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_3052 MotA/TolQ/ExbB proton channel
YP_986645.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_3053 biopolymer transport protein ExbD/TolR
YP_986646.1	KEGG: pol:Bpro_3054 hypothetical protein
YP_986647.1	PFAM: protein of unknown function DUF336; KEGG: rfr:Rfer_2775 protein of unknown function DUF336
YP_986648.1	PFAM: protein of unknown function UPF0005; KEGG: rfr:Rfer_2776 protein of unknown function UPF0005
YP_986649.1	KEGG: rfr:Rfer_2777 hypothetical protein
YP_986650.1	in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]
YP_986652.1	PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_4146 sigma-24 (FecI-like)
YP_986653.1	KEGG: eba:ebA4513 hypothetical protein
YP_986654.1	KEGG: tbd:Tbd_2155 hypothetical protein
YP_986656.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_0399 transcriptional regulator, AsnC family
YP_986657.1	TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; Proline dehydrogenase; KEGG: pfo:Pfl_0452 delta-1-pyrroline-5-carboxylate dehydrogenase 3
YP_986658.1	KEGG: bcn:Bcen_6095 2',5' RNA ligase
YP_986659.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: bbr:BB1245 tetrathionate reductase subunit B
YP_986660.1	PFAM: Polysulphide reductase, NrfD; KEGG: bbr:BB1244 tetrathionate reductase subunit C
YP_986661.1	PFAM: molydopterin dinucleotide-binding region; KEGG: bpa:BPP1028 tetrathionate reductase subunit A
YP_986662.1	KEGG: bca:BCE_0854 hypothetical protein
YP_986663.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: nha:Nham_1150 DEAD/DEAH box helicase-like
YP_986664.1	KEGG: bja:bll1929 hypothetical protein
YP_986665.1	SMART: DEXDc2; helicase c2; KEGG: bps:BPSS0856 hypothetical protein
YP_986666.1	KEGG: bur:Bcep18194_B1631 hypothetical protein
YP_986667.1	KEGG: pol:Bpro_3166 hypothetical protein
YP_986668.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tbd:Tbd_2791 two component transcriptional regulator, winged helix family
YP_986669.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: tbd:Tbd_2792 periplasmic sensor signal transduction histidine kinase
YP_986670.1	PFAM: Redoxin domain protein; KEGG: bbr:BB2319 putative thiol:disulfide interchange protein
YP_986671.1	PFAM: beta-lactamase domain protein; KEGG: pol:Bpro_4844 beta-lactamase-like
YP_986672.1	PFAM: regulatory protein, ArsR; KEGG: pfo:Pfl_3459 regulatory protein, ArsR
YP_986673.1	PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: pol:Bpro_4846 protein of unknown function DUF395, YeeE/YedE
YP_986674.1	PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: bxe:Bxe_B1027 hypothetical protein
YP_986675.1	KEGG: pol:Bpro_4848 protein of unknown function DUF599
YP_986677.1	PFAM: Negative transcriptional regulator; KEGG: bbr:BB2357 hypothetical protein
YP_986678.1	PFAM: regulatory protein, TetR; KEGG: rme:Rmet_3608 transcriptional regulator, TetR family
YP_986679.1	PFAM: beta-ketoacyl synthase; KEGG: pae:PA1373 3-oxoacyl-acyl carrier protein synthase II
YP_986680.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region
YP_986681.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_5343 IstB-like ATP-binding protein
YP_986684.1	KEGG: dar:Daro_1658 hypothetical protein
YP_986685.1	KEGG: ppu:PP_2495 hypothetical protein
YP_986686.1	KEGG: ppu:PP_2496 hypothetical protein
YP_986687.1	KEGG: dar:Daro_1655 hypothetical protein
YP_986688.1	KEGG: rpd:RPD_2285 hypothetical protein
YP_986689.1	KEGG: psb:Psyr_4511 hypothetical protein
YP_986690.1	PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; KEGG: bpa:BPP0485 plasmid-related protein
YP_986692.1	PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66
YP_986693.1	PFAM: IS66 Orf2 family protein; KEGG: psb:Psyr_0746 IS66 Orf2 like
YP_986694.1	PFAM: transposase IS3/IS911 family protein; KEGG: pst:PSPTO_5581 hypothetical protein
YP_986695.1	PFAM: UvrD/REP helicase; KEGG: eba:ebA6583 predicted DNA helicase
YP_986696.1	KEGG: eba:ebA6581 hypothetical protein
YP_986697.1	PFAM: phage integrase family protein; KEGG: rfr:Rfer_2830 phage integrase
YP_986698.1	KEGG: rfr:Rfer_2829 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase
YP_986699.1	Involved in ubiquinone biosynthesis
YP_986700.1	PFAM: OmpA/MotB domain protein; KEGG: pol:Bpro_1796 OmpA/MotB
YP_986701.1	negatively supercoils closed circular double-stranded DNA
YP_986702.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_986703.1	TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: pol:Bpro_1792 chorismate mutase
YP_986704.1	PFAM: Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pol:Bpro_1791 prephenate dehydrogenase
YP_986705.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; catalyzes CMP phosphorylation
YP_986706.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_986707.1	TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; KEGG: pol:Bpro_1788 integration host factor, beta subunit
YP_986708.1	KEGG: rfr:Rfer_1564 hypothetical protein
YP_986709.1	PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: rfr:Rfer_1563 putative transmembrane protein
YP_986710.1	KEGG: pol:Bpro_1783 hypothetical protein
YP_986711.1	subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+
YP_986712.1	subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali
YP_986713.1	subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone
YP_986714.1	subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport
YP_986715.1	PFAM: multiple resistance and pH regulation protein F; KEGG: psp:PSPPH_3176 potassium efflux system protein PhaF
YP_986716.1	PFAM: Na+/H+ antiporter subunit; KEGG: pen:PSEEN3538 multicomponent potassium-proton antiporter, subunit G (PhaG)
YP_986717.1	PFAM: Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: pol:Bpro_1781 5-oxoprolinase (ATP-hydrolyzing)
YP_986718.1	KEGG: bpa:BPP4392 hypothetical protein
YP_986719.1	KEGG: rme:Rmet_1871 putative transcriptional regulator
YP_986720.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_1774 TRAP dicarboxylate transporter-DctP subunit
YP_986721.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_1773 hypothetical protein
YP_986722.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_1772 TRAP dicarboxylate transporter-DctM subunit
YP_986723.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_986724.1	PFAM: conserved hypothetical protein 730; KEGG: pol:Bpro_3075 conserved hypothetical protein 730
YP_986725.1	PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3076 major facilitator superfamily MFS_1
YP_986726.1	PFAM: protein of unknown function DUF195; KEGG: bur:Bcep18194_A4217 protein of unknown function DUF195
YP_986727.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_3078 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_986728.1	KEGG: pol:Bpro_3079 putative transmembrane protein
YP_986729.1	catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate
YP_986730.1	PFAM: thioesterase superfamily protein; KEGG: rfr:Rfer_2141 thioesterase superfamily
YP_986731.1	TIGRFAM: phasin family protein; KEGG: pol:Bpro_3088 phasin
YP_986732.1	PFAM: peptidase M23B; KEGG: bpa:BPP1182 putative peptidase
YP_986733.1	PFAM: pseudouridine synthase; KEGG: tbd:Tbd_0853 pseudouridine synthase, Rsu
YP_986734.1	PFAM: Sel1 domain protein repeat-containing protein; KEGG: zmo:ZMO1969 hypothetical protein
YP_986736.1	TIGRFAM: RarD protein, DMT superfamily transporter; KEGG: pen:PSEEN3058 chloramphenicol-sensitive protein RarD
YP_986737.1	PFAM: nuclease (SNase domain protein); KEGG: mca:MCA2942 prophage MuMc02, nuclease, putative
YP_986738.1	PFAM: phosphoesterase, DHHA1; KEGG: rfr:Rfer_1390 phosphoesterase, DHHA1
YP_986741.1	PFAM: pseudouridine synthase; KEGG: gsu:GSU3160 RNA pseudouridine synthase family protein
YP_986742.1	PFAM: MgtC/SapB transporter; KEGG: pfl:PFL_2871 transporter, MgtC family
YP_986743.1	KEGG: pol:Bpro_3354 hypothetical protein
YP_986744.1	KEGG: pen:PSEEN2301 hypothetical protein
YP_986745.1	PFAM: OsmC family protein; KEGG: pol:Bpro_4479 OsmC-like protein
YP_986746.1	PFAM: GTP-binding protein, HSR1-related; KEGG: rfr:Rfer_1388 GTP-binding
YP_986747.1	KEGG: pol:Bpro_3397 hypothetical protein
YP_986748.1	KEGG: pol:Bpro_3398 hypothetical protein
YP_986749.1	KEGG: mag:amb1833 Oxyanion-translocating ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase
YP_986750.1	SMART: regulatory protein, ArsR; KEGG: rso:RSp1129 putative arsenical resistance operon repressor transcription regulator protein
YP_986751.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_A1137 glyoxalase/bleomycin resistance protein/dioxygenase
YP_986752.1	PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pol:Bpro_2216 protein tyrosine phosphatase
YP_986753.1	TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: dar:Daro_0700 bile acid:sodium symporter
YP_986754.1	PFAM: major facilitator superfamily MFS_1; KEGG: bpe:BP1682 hypothetical protein
YP_986755.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_0879 transcriptional regulator, LysR family
YP_986756.1	catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit
YP_986757.1	TIGRFAM: glutamate--cysteine ligase; KEGG: pol:Bpro_3399 glutamate--cysteine ligase, monofunctional
YP_986758.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bur:Bcep18194_C7556 short-chain dehydrogenase/reductase SDR
YP_986759.1	catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA
YP_986760.1	PFAM: Ku domain protein; KEGG: nmu:Nmul_A1176 Ku
YP_986761.1	KEGG: net:Neut_2266 conserved hypothetical protein
YP_986762.1	PFAM: AAA-4 family protein; KEGG: xcv:XCV2169 ATP-dependent DNA helicase
YP_986763.1	KEGG: xcv:XCV2168 hypothetical protein
YP_986764.1	KEGG: xcv:XCV2167 hypothetical protein
YP_986765.1	KEGG: xcv:XCV2166 hypothetical protein
YP_986766.1	KEGG: xcv:XCV2165 putative DNA methylase
YP_986767.1	TIGRFAM: DNA binding domain, excisionase family; PFAM: Prophage CP4-57 regulatory; KEGG: pau:PA14_15570 hypothetical protein
YP_986768.1	KEGG: xcv:XCV2162 hypothetical protein
YP_986770.1	PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: pau:PA14_15540 putative mating pair formation protein TrbL
YP_986771.1	KEGG: pau:PA14_15530 possible entry/exclusion protein TrbK
YP_986772.1	KEGG: pau:PA14_15520 mating pair formation protein TrbJ
YP_986773.1	KEGG: pau:PA14_15510 OriT-binding protein, TraJ
YP_986774.1	KEGG: pau:PA14_15500 possible OriT-binding protein, TraK
YP_986775.1	PFAM: replication C family protein; KEGG: pau:PA14_15400 putative replication protein, RepC
YP_986776.1	KEGG: xcv:XCV2481 replication protein A
YP_986777.1	KEGG: abo:ABO_2067 hypothetical protein
YP_986778.1	KEGG: pau:PA14_15360 hypothetical protein
YP_986779.1	PFAM: Prophage CP4-57 regulatory; KEGG: xcv:XCV2483 putative regulatory protein, AlpA family
YP_986780.1	PFAM: phage integrase family protein; KEGG: xcv:XCV2484 phage-related integrase
YP_986781.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_986782.1	KEGG: rfr:Rfer_2288 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; 2-nitropropane dioxygenase, NPD
YP_986783.1	KEGG: pol:Bpro_2439 hypothetical protein
YP_986784.1	PFAM: protein of unknown function UPF0125; KEGG: pol:Bpro_2438 protein of unknown function UPF0125
YP_986785.1	PFAM: cyclase/dehydrase; KEGG: pol:Bpro_2437 cyclase/dehydrase
YP_986786.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_986787.1	PFAM: Secreted repeat of unknown function; KEGG: rfr:Rfer_2547 secreted repeat of unknown function
YP_986788.1	PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_2548 sigma-24 (FecI-like)
YP_986789.1	KEGG: rfr:Rfer_2549 putative transmembrane transcriptional regulator
YP_986790.1	catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA
YP_986791.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_2138 protein of unknown function DUF6, transmembrane
YP_986792.1	TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: pol:Bpro_2429 GTP-binding protein TypA
YP_986793.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_986794.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_986795.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_986796.1	KEGG: pol:Bpro_2425 NusA antitermination factor; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; KH, type 1, domain protein; NusA N-terminal domain protein; SMART: KH domain protein
YP_986797.1	PFAM: protein of unknown function DUF150; KEGG: rfr:Rfer_2132 protein of unknown function DUF150
YP_986798.1	KEGG: pol:Bpro_1834 hypothetical protein
YP_986799.1	PFAM: cytochrome c, class I; KEGG: pol:Bpro_3449 cytochrome c, class I
YP_986800.1	KEGG: bbr:BB4510 probable cytochrome c
YP_986801.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_1977 short-chain dehydrogenase/reductase SDR
YP_986802.1	KEGG: pol:Bpro_2700 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein
YP_986804.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_2680 tRNA/rRNA methyltransferase (SpoU)
YP_986805.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_986806.1	catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM
YP_986807.1	catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis
YP_986808.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_986809.1	adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis
YP_986810.1	PFAM: outer membrane chaperone Skp (OmpH); KEGG: pol:Bpro_2686 outer membrane chaperone Skp (OmpH)
YP_986811.1	PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: pol:Bpro_2687 surface antigen (D15)
YP_986812.1	TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: pol:Bpro_2688 peptidase M50, putative membrane-associated zinc metallopeptidase
YP_986813.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_986814.1	PFAM: phosphatidate cytidylyltransferase; KEGG: pol:Bpro_2690 phosphatidate cytidylyltransferase
YP_986815.1	KEGG: pol:Bpro_2691 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase
YP_986816.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_986817.1	Catalyzes the phosphorylation of UMP to UDP
YP_986818.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_986819.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_986820.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_986821.1	PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_2697 D-amino-acid dehydrogenase
YP_986822.1	TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: rfr:Rfer_1984 protein of unknown function UPF0031
YP_986824.1	KEGG: pol:Bpro_2657 hypothetical protein
YP_986825.1	PFAM: Mammalian cell entry related domain protein; KEGG: pol:Bpro_2658 ABC-type transport system periplasmic component
YP_986826.1	KEGG: pol:Bpro_2659 ABC-type transport system ipermease component
YP_986827.1	PFAM: regulatory protein, MerR; KEGG: pol:Bpro_3479 transcriptional regulator, MerR family
YP_986828.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dar:Daro_2631 ATPase, E1-E2 type:heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase:heavy metal translocating P-type ATPase
YP_986829.1	KEGG: sal:Sala_2445 hypothetical protein
YP_986830.1	PFAM: protein of unknown function DUF161; KEGG: sme:SMc02240 hypothetical protein
YP_986831.1	KEGG: pol:Bpro_3482 hypothetical protein
YP_986833.1	KEGG: bpm:BURPS1710b_A2008 copper tolerance protein
YP_986834.1	PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal
YP_986835.1	PFAM: blue (type 1) copper domain protein; KEGG: eba:ebA1878 predicted multicopper oxidase
YP_986836.1	PFAM: protein of unknown function DUF411; KEGG: pol:Bpro_3488 protein of unknown function DUF411
YP_986837.1	KEGG: pol:Bpro_3489 hypothetical protein
YP_986838.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: pol:Bpro_1178 heavy metal translocating P-type ATPase
YP_986839.1	PFAM: peptidase S58, DmpA; KEGG: bmb:BruAb2_0832 hypothetical protein
YP_986840.1	KEGG: pol:Bpro_3507 TRAP transporter solute receptor, TAXI family
YP_986841.1	KEGG: rfr:Rfer_2170 hypothetical protein
YP_986842.1	ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence
YP_986843.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rfr:Rfer_2169 DEAD/DEAH box helicase-like
YP_986844.1	PFAM: peptidase M14, carboxypeptidase A; KEGG: pol:Bpro_2152 peptidase M14, carboxypeptidase A
YP_986845.1	PFAM: Integrase, catalytic region; KEGG: bpm:BURPS1710b_A1950 integrase core domain protein
YP_986846.1	PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase
YP_986847.1	KEGG: eba:ebD99 hypothetical protein
YP_986848.1	PFAM: DNA polymerase, beta domain protein region; KEGG: eba:ebA5860 predicted ArsR subfamily of helix-turn-helix bacterial transcription regulatory protein
YP_986849.1	PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: shm:Shewmr7_2863 N-6 DNA methylase
YP_986851.1	PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; EcoEI R, C-terminal domain protein; SMART: DEAD-like helicases-like; KEGG: dde:Dde_2499 DEAD/DEAH box helicase-like
YP_986853.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_3064 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_986854.1	PFAM: histone family protein DNA-binding protein; KEGG: pol:Bpro_3065 histone-like DNA-binding protein
YP_986855.1	KEGG: rfr:Rfer_2245 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_986856.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_986857.1	KEGG: pol:Bpro_2033 hypothetical protein
YP_986858.1	PFAM: phage integrase family protein; KEGG: pau:PA14_31280 putative integrase
YP_986859.1	PFAM: protein of unknown function DUF1044; KEGG: rru:Rru_A0922 protein of unknown function DUF1044
YP_986860.1	KEGG: pen:PSEEN2902 transcriptional regulator
YP_986861.1	KEGG: shm:Shewmr7_1033 hypothetical protein
YP_986862.1	KEGG: rfr:Rfer_1064 hypothetical protein
YP_986863.1	KEGG: shm:Shewmr7_1035 hypothetical protein
YP_986864.1	KEGG: shm:Shewmr7_1036 hypothetical protein
YP_986865.1	KEGG: neu:NE2099 hypothetical protein
YP_986867.1	KEGG: pca:Pcar_2916 hypothetical protein
YP_986868.1	PFAM: DNA repair protein RadC; KEGG: pau:PA14_31260 RadC-like protein
YP_986869.1	KEGG: rso:RSc2619 hypothetical protein
YP_986871.1	PFAM: protein of unknown function DUF932; KEGG: rme:Rmet_1244 protein of unknown function DUF932
YP_986872.1	PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_1245 ParB-like nuclease
YP_986873.1	PFAM: protein of unknown function DUF736; KEGG: rme:Rmet_1248 protein of unknown function DUF736
YP_986874.1	PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_1249 transcriptional regulator, XRE family
YP_986875.1	KEGG: mes:Meso_4392 hypothetical protein
YP_986876.1	PFAM: TniB family protein; KEGG: rme:Rmet_4973 TniB
YP_986877.1	PFAM: Integrase, catalytic region; KEGG: nha:Nham_4579 integrase, catalytic region
YP_986878.1	KEGG: mag:amb3764 hypothetical protein
YP_986879.1	KEGG: rme:Rmet_1250 putative lipoprotein
YP_986880.1	KEGG: rme:Rmet_1252 hypothetical protein
YP_986881.1	KEGG: rme:Rmet_1253 hypothetical protein
YP_986882.1	KEGG: rme:Rmet_1485 conserved hypothetical replication initiator and transcription repressor protein
YP_986883.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rso:RSc2605 putative partition protein
YP_986884.1	KEGG: rme:Rmet_1256 hypothetical protein
YP_986885.1	KEGG: bam:Bamb_1987 hypothetical protein
YP_986886.1	KEGG: rso:RSc2602 probable conjugal transfer TRAF transmembrane protein
YP_986887.1	PFAM: Integrase, catalytic region; KEGG: rme:Rmet_1301 integrase, catalytic region
YP_986889.1	PFAM: transposase, mutator type; KEGG: xcv:XCVc0009 transposase, mutator family
YP_986890.1	KEGG: pol:Bpro_3489 hypothetical protein
YP_986891.1	PFAM: blue (type 1) copper domain protein; KEGG: pol:Bpro_3487 blue (type 1) copper domain
YP_986892.1	PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal
YP_986893.1	KEGG: pol:Bpro_3484 putative copper resistance-related lipoprotein
YP_986894.1	KEGG: pol:Bpro_3483 hypothetical protein
YP_986895.1	TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: rfr:Rfer_0549 flagellar hook-basal body complex protein
YP_986896.1	TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: nwi:Nwi_1948 acetate kinase
YP_986897.1	PFAM: regulatory protein, MerR; KEGG: csa:Csal_3005 transcriptional regulator, MerR family
YP_986898.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: gme:Gmet_2187 cyclopropane-fatty-acyl-phospholipid synthase
YP_986899.1	KEGG: mmc:Mmcs_1460 hypothetical protein
YP_986900.1	PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; KEGG: mes:Meso_3878 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase
YP_986901.1	KEGG: rme:Rmet_6120 hypothetical protein
YP_986902.1	catalyzes the formation of 3-phospho-D-glycerol phosphate from D-glyceraldehyde 3-phosphate in glycolysis
YP_986903.1	PFAM: ABC-1 domain protein; KEGG: mes:Meso_3885 twin-arginine translocation pathway signal
YP_986904.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: mes:Meso_3888 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_986905.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sal:Sala_2559 methyltransferase type 11
YP_986906.1	PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase
YP_986907.1	KEGG: pol:Bpro_1196 hypothetical protein
YP_986909.1	PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: tbd:Tbd_1834 putative protease
YP_986910.1	Catalyzes the formation of PRPP from ATP and ribose 5-phosphate
YP_986911.1	catalyzes the formation of thymine and 2-deoxy-alpha-D-ribose 1-phosphate from thymidine
YP_986912.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: pol:Bpro_1210 beta-lactamase-like
YP_986913.1	PFAM: protein of unknown function DUF477; KEGG: rpc:RPC_1335 protein of unknown function DUF477
YP_986914.1	PFAM: protein of unknown function DUF477; KEGG: nha:Nham_3401 protein of unknown function DUF477
YP_986915.1	PFAM: LemA family protein; KEGG: pol:Bpro_0331 LemA
YP_986916.1	PFAM: major facilitator superfamily MFS_1; KEGG: nha:Nham_4365 major facilitator superfamily MFS_1
YP_986917.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: nha:Nham_4364 copper-translocating P-type ATPase
YP_986918.1	PFAM: protein of unknown function DUF344; KEGG: reu:Reut_C6193 protein of unknown function DUF344
YP_986920.1	PFAM: regulatory protein, MerR; KEGG: sme:SMa0281 putative regulator, MerR family
YP_986923.1	KEGG: eba:ebA6677 hypothetical protein
YP_986924.1	TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: dar:Daro_2265 heavy metal efflux pump CzcA
YP_986925.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dar:Daro_2264 secretion protein HlyD
YP_986926.1	PFAM: outer membrane efflux protein; KEGG: dar:Daro_2263 outer membrane efflux protein
YP_986927.1	KEGG: reu:Reut_A1356 hypothetical protein
YP_986928.1	KEGG: pol:Bpro_1182 membrane protein-like
YP_986929.1	KEGG: eba:ebA3243 transposase, IS5 family
YP_986930.1	KEGG: lpp:lpp2348 hypothetical protein
YP_986931.1	KEGG: rfr:Rfer_0418 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; YHS domain protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein
YP_986932.1	KEGG: ana:asl7591 hypothetical protein
YP_986933.1	KEGG: rfr:Rfer_0419 hypothetical protein
YP_986934.1	KEGG: pol:Bpro_1175 hypothetical protein
YP_986935.1	KEGG: ppu:PP_5391 hypothetical protein
YP_986936.1	KEGG: dar:Daro_2282 hypothetical protein
YP_986937.1	PFAM: transposase, IS4 family protein; KEGG: rso:RSp1136 ISRSO18-transposase protein
YP_986939.1	KEGG: pol:Bpro_3489 hypothetical protein
YP_986940.1	PFAM: blue (type 1) copper domain protein; KEGG: pol:Bpro_3487 blue (type 1) copper domain
YP_986941.1	PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: pol:Bpro_3485 twin-arginine translocation pathway signal
YP_986942.1	KEGG: pol:Bpro_3484 putative copper resistance-related lipoprotein
YP_986943.1	KEGG: pol:Bpro_3483 hypothetical protein
YP_986944.1	TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tbd:Tbd_1749 two component heavy metal response transcriptional regulator, winged helix family
YP_986945.1	TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rme:Rmet_5673 heavy metal sensor signal transduction histidine kinase
YP_986946.1	KEGG: bpe:BP0266 hypothetical protein
YP_986948.1	KEGG: spr:spr0717 transposase
YP_986949.1	KEGG: spn:SP0811 transposase family protein
YP_986950.1	KEGG: bms:BRA0376 hypothetical protein
YP_986951.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_986952.1	KEGG: pol:Bpro_1608 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase
YP_986953.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_986954.1	PFAM: Colicin V production protein; KEGG: pol:Bpro_1606 colicin V production protein
YP_986955.1	PFAM: Sporulation domain protein; KEGG: pol:Bpro_1605 sporulation related
YP_986956.1	TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rfr:Rfer_2686 FolC bifunctional protein
YP_986957.1	PFAM: arsenate reductase and related; KEGG: pol:Bpro_1602 hypothetical protein
YP_986958.1	PFAM: 17 kDa surface antigen; KEGG: pol:Bpro_1601 17 kDa surface antigen
YP_986959.1	PFAM: protein of unknown function DUF1255; KEGG: rso:RSc2552 hypothetical protein
YP_986960.1	catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis
YP_986961.1	TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: rpa:RPA2810 possible ExsB protein
YP_986962.1	TIGRFAM: conserved hypothetical integral membrane protein; PFAM: protein of unknown function DUF165; KEGG: pau:PA14_00140 hypothetical protein
YP_986963.1	PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: bps:BPSL1130 putative sigma factor
YP_986964.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: ade:Adeh_3128 alkylhydroperoxidase AhpD core
YP_986965.1	TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; KEGG: mag:amb4305 di- and tricarboxylate transporters
YP_986966.1	KEGG: rfr:Rfer_2691 UDP-N-acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase domain protein
YP_986967.1	putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_986968.1	KEGG: pol:Bpro_1595 hypothetical protein
YP_986969.1	KEGG: rfr:Rfer_2693 HD-GYP domain-like
YP_986970.1	PFAM: protein of unknown function DUF205; KEGG: rfr:Rfer_2695 protein of unknown function DUF205
YP_986971.1	TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pol:Bpro_1593 hypothetical protein
YP_986972.1	PFAM: aldo/keto reductase; KEGG: pol:Bpro_1592 aldo/keto reductase
YP_986973.1	PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_1589 alpha/beta hydrolase fold
YP_986974.1	TIGRFAM: diaminopimelate dehydrogenase; KEGG: dsy:DSY0242 hypothetical protein
YP_986976.1	TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: pol:Bpro_1587 peptidase M1, alanyl aminopeptidase
YP_986977.1	catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate
YP_986978.1	catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA
YP_986979.1	PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: pol:Bpro_2415 lysine decarboxylase
YP_986980.1	KEGG: pol:Bpro_2414 protein of unknown function DUF107
YP_986981.1	PFAM: band 7 protein; KEGG: rfr:Rfer_2124 band 7 protein
YP_986982.1	PFAM: ferredoxin; KEGG: rfr:Rfer_1389 ferredoxin
YP_986983.1	PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: pol:Bpro_2885 3,4-dihydroxy-2-butanone 4-phosphate synthase
YP_986984.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_986985.1	TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: rfr:Rfer_2670 NusB antitermination factor
YP_986986.1	PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2888 aminotransferase, class I and II
YP_986987.1	TIGRFAM: 4-hydroxybenzoyl-CoA thioesterase; PFAM: thioesterase superfamily protein; KEGG: pol:Bpro_2889 4-hydroxybenzoyl-CoA thioesterase
YP_986988.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_2890 MotA/TolQ/ExbB proton channel
YP_986989.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rfr:Rfer_2673 biopolymer transport protein ExbD/TolR
YP_986990.1	TIGRFAM: TonB family protein; PFAM: TolA family protein; KEGG: rfr:Rfer_1159 TonB-like
YP_986991.1	PFAM: General substrate transporter; KEGG: bpe:BP2732 putative membrane transport protein
YP_986992.1	TIGRFAM: ubiquinol oxidase, subunit II; PFAM: cytochrome c oxidase, subunit II; COX aromatic rich domain protein; KEGG: sme:SMb21487 putative cytochrome o ubiquinol oxidase chain II protein
YP_986993.1	PFAM: cytochrome c oxidase, subunit I; KEGG: atc:AGR_C_227 ba-type ubiquinol oxidase chain I
YP_986994.1	PFAM: cytochrome c oxidase, subunit III; KEGG: atc:AGR_C_225 bo-type ubiquinol oxidase chain III
YP_986995.1	PFAM: cytochrome C oxidase subunit IV; KEGG: reu:Reut_B4893 prokaryotic cytochrome c oxidase subunit IV
YP_986996.1	PFAM: Surfeit locus 1 family protein; KEGG: bpa:BPP1090 exported SurF1-family protein
YP_986997.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: abo:ABO_2032 two-component, sensor histidine protein kinase, putative
YP_986998.1	PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: abo:ABO_2031 response regulator
YP_986999.1	KEGG: bja:blr1415 hypothetical glutathione S-transferase like protein
YP_987000.1	PFAM: peptidase U32; KEGG: cvi:CV1955 probable protease
YP_987001.1	KEGG: xac:XAC2490 hypothetical protein
YP_987002.1	KEGG: rpa:RPA3870 hypothetical protein
YP_987003.1	PFAM: helix-turn-helix domain protein; KEGG: pol:Bpro_3594 transcriptional regulator, XRE family
YP_987004.1	catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate
YP_987005.1	KEGG: pol:Bpro_3596 hypothetical protein
YP_987006.1	PFAM: HpcH/HpaI aldolase; KEGG: pol:Bpro_3597 HpcH/HpaI aldolase
YP_987007.1	catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate
YP_987008.1	catalyzes the oxidation of malate to oxaloacetate
YP_987009.1	PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: pol:Bpro_3599 transcriptional regulator, GntR family
YP_987010.1	PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: pol:Bpro_3600 succinate dehydrogenase, cytochrome b subunit
YP_987011.1	KEGG: pol:Bpro_3601 succinate dehydrogenase, cytochrome b subunit
YP_987012.1	KEGG: pol:Bpro_3602 succinate dehydrogenase, flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_987013.1	KEGG: pol:Bpro_3603 succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin
YP_987014.1	PFAM: protein of unknown function DUF339; KEGG: pol:Bpro_3604 protein of unknown function DUF339
YP_987015.1	type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH
YP_987016.1	PFAM: protein of unknown function DUF156; KEGG: bms:BR0131 hypothetical protein
YP_987017.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bam:Bamb_6311 alcohol dehydrogenase GroES domain protein
YP_987018.1	PFAM: putative esterase; KEGG: rfr:Rfer_0122 carboxylesterase
YP_987019.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: mlo:mll2956 hypothetical protein
YP_987020.1	PFAM: Radical SAM domain protein; KEGG: pol:Bpro_3135 radical SAM
YP_987021.1	KEGG: pol:Bpro_3166 hypothetical protein
YP_987022.1	PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: nmu:Nmul_A0938 GreA/GreB family elongation factor
YP_987023.1	PFAM: acyltransferase 3; KEGG: pol:Bpro_3139 acyltransferase 3
YP_987024.1	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: pol:Bpro_3140 2-nitropropane dioxygenase, NPD
YP_987025.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_3141 acyl-CoA dehydrogenase-like
YP_987026.1	PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: bbr:BB0621 electron transfer flavoprotein alpha-subunit
YP_987027.1	PFAM: electron transfer flavoprotein beta-subunit; KEGG: bbr:BB0620 electron transfer flavoprotein beta-subunit
YP_987028.1	PFAM: MscS Mechanosensitive ion channel; KEGG: pol:Bpro_3144 MscS mechanosensitive ion channel
YP_987029.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bxe:Bxe_A0993 enoyl-CoA hydratase/isomerase family protein
YP_987030.1	PFAM: histone deacetylase superfamily; KEGG: pol:Bpro_3145 histone deacetylase superfamily
YP_987031.1	PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rfr:Rfer_2529 AAA_3 ATPase
YP_987032.1	PFAM: protein of unknown function DUF58; KEGG: rfr:Rfer_2530 protein of unknown function DUF58
YP_987033.1	PFAM: transglutaminase domain protein; KEGG: rfr:Rfer_2531 transglutaminase-like
YP_987034.1	TIGRFAM: lytic murein transglycosylase B; KEGG: rfr:Rfer_2545 lytic murein transglycosylase B
YP_987035.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: xcv:XCV2184 transcriptional regulator, LysR family
YP_987036.1	PFAM: conserved hypothetical protein 698; KEGG: pae:PA5383 hypothetical protein
YP_987037.1	KEGG: rfr:Rfer_1487 putative transporter signal peptide protein
YP_987038.1	KEGG: pfl:PFL_3978 lipoprotein, putative
YP_987039.1	PFAM: CS; KEGG: pol:Bpro_3264 heat shock protein HSP20
YP_987040.1	PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3187 protein of unknown function DUF214
YP_987041.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3186 ABC transporter related
YP_987042.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_3185 secretion protein HlyD
YP_987043.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rfr:Rfer_3184 RND efflux system, outer membrane lipoprotein, NodT
YP_987044.1	PFAM: aldehyde dehydrogenase; KEGG: bpm:BURPS1710b_1049 aldehyde dehydrogenase family protein
YP_987045.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_987046.1	PFAM: Extracellular ligand-binding receptor; KEGG: bxe:Bxe_A0821 ABC branched chain amino acid family transporter, periplasmic ligand binding protein
YP_987047.1	PFAM: ANTAR domain protein; KEGG: pol:Bpro_3266 response regulator receiver (CheY-like) and ANTAR domain protein
YP_987048.1	KEGG: pol:Bpro_3267 twin-arginine translocation pathway signal
YP_987049.1	TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2555 nitrate transport permease
YP_987050.1	KEGG: pol:Bpro_3269 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase
YP_987051.1	PFAM: CBS domain containing protein; KEGG: bpm:BURPS1710b_A2480 CBS domain protein
YP_987052.1	KEGG: xcb:XC_3036 hypothetical protein
YP_987053.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: abo:ABO_0965 multidrug/solvent RND membrane fusion protein, putative
YP_987054.1	TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: psb:Psyr_2865 hydrophobe/amphiphile efflux-1 HAE1
YP_987055.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_1416 RND efflux system outer membrane lipoprotein NodT
YP_987056.1	TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rfr:Rfer_2557 nitrite reductase (NAD(P)H) large subunit, NirB
YP_987057.1	TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3278 nitrite reductase (NAD(P)H) large subunit, NirD
YP_987058.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: pol:Bpro_3279 molybdopterin oxidoreductase
YP_987059.1	PFAM: glycosyl transferase, family 3; KEGG: pol:Bpro_3280 glycosyl transferase, family 3
YP_987060.1	TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rfr:Rfer_2883 uroporphyrin-III C-methyltransferase
YP_987061.1	PFAM: thioesterase superfamily protein; KEGG: dar:Daro_3519 thioesterase superfamily
YP_987062.1	PFAM: Extracellular ligand-binding receptor; KEGG: reu:Reut_B5396 extracellular ligand-binding receptor
YP_987063.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_2884 HI0933-like protein
YP_987064.1	PFAM: NnrS family protein; KEGG: rfr:Rfer_1884 NnrS
YP_987065.1	KEGG: bps:BPSL2375 hypothetical protein
YP_987066.1	PFAM: protein of unknown function DUF59; KEGG: bte:BTH_I1792 domain of unknown function domain protein
YP_987067.1	TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: bps:BPSL2373 NifU family protein
YP_987068.1	PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bte:BTH_I1794 cysteine desulfurase SufS
YP_987069.1	PFAM: SufBD protein; KEGG: bte:BTH_I1795 SufD domain protein
YP_987070.1	KEGG: bte:BTH_I1796 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase
YP_987071.1	with SufCD activates cysteine desulfurase SufS
YP_987072.1	PFAM: regulatory protein, ArsR; KEGG: bms:BR1913 transcriptional regulator, ArsR family
YP_987073.1	PFAM: NIPSNAP family containing protein; KEGG: bxe:Bxe_B1182 hypothetical protein
YP_987074.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: bbr:BB3722 hypothetical protein
YP_987075.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_987076.1	PFAM: GatB/Yqey domain protein; KEGG: pol:Bpro_3285 GatB/YqeY
YP_987077.1	KEGG: rso:RSp1612 probable tartrate dehydrogenase oxidoreductase protein; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase
YP_987078.1	PFAM: protein of unknown function DUF156; KEGG: atc:AGR_C_1623 hypothetical protein
YP_987079.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: sme:SMc04167 putative histidine-rich transporter transmembrane protein
YP_987080.1	PFAM: protein of unknown function DUF938; KEGG: tbd:Tbd_0032 hypothetical protein
YP_987081.1	PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: aci:ACIAD0422 hypothetical protein
YP_987082.1	PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase
YP_987083.1	PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase
YP_987084.1	KEGG: pol:Bpro_2045 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase
YP_987085.1	PFAM: protein of unknown function DUF45; KEGG: pol:Bpro_3622 protein of unknown function DUF45
YP_987086.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A2106 hypothetical protein
YP_987087.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_0585 uncharacterized protein UPF0065
YP_987088.1	PFAM: pyruvate carboxyltransferase; KEGG: bxe:Bxe_A2729 putative hydroxymethylglutaryl-CoA lyase
YP_987089.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bxe:Bxe_A2730 predicted acyl-CoA transferases/carnitine dehydratase, CaiB/BaiF family
YP_987090.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mca:MCA0999 transcriptional regulator, LysR family
YP_987091.1	KEGG: pol:Bpro_3073 hypothetical protein
YP_987092.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_987093.1	KEGG: pol:Bpro_4141 hypothetical protein
YP_987094.1	PFAM: Na+/solute symporter; KEGG: rfr:Rfer_2192 Na+/solute symporter
YP_987095.1	KEGG: rfr:Rfer_2192 Na+/solute symporter
YP_987096.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_987097.1	PFAM: protein of unknown function DUF299; KEGG: pol:Bpro_3043 protein of unknown function DUF299
YP_987098.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sbo:SBO_0471 alkyl hydroperoxide reductase, F52a subunit
YP_987099.1	with AhpF catalyzes the conversion of alkyl hydroperoxides to their corresponding alcohols; AhpC reduced the hydroperoxide substrate
YP_987100.1	TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: pol:Bpro_3046 bacterioferritin
YP_987101.1	PFAM: flagellar transcriptional activator; KEGG: rfr:Rfer_3700 flagellar transcriptional activator FlhD
YP_987102.1	With FlhD is involved in the activation of class 2 flagellar genes and as well as a number of other genetic systems
YP_987103.1	KEGG: mfa:Mfla_2213 hypothetical protein
YP_987104.1	KEGG: dde:Dde_2399 hypothetical protein
YP_987105.1	TIGRFAM: hypothetical membrane protein; integral membrane protein, YccS/YhfK family; PFAM: protein of unknown function DUF893, YccS/YhfK; KEGG: pfo:Pfl_5250 intergral membrane protein
YP_987106.1	catalyzes the formation of oxaloacetate from phosphoenolpyruvate
YP_987107.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_987108.1	KEGG: rfr:Rfer_1716 uroporphyrinogen III synthase
YP_987109.1	PFAM: protein of unknown function DUF513, hemX; KEGG: rfr:Rfer_1717 protein of unknown function DUF513, HemX
YP_987110.1	PFAM: HemY domain protein; KEGG: pol:Bpro_3661 putative porphyrin biosynthesis related protein
YP_987111.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902
YP_987112.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_3717 glyoxalase/bleomycin resistance protein/dioxygenase
YP_987113.1	TIGRFAM: valyl-tRNA synthetase; KEGG: rfr:Rfer_2376 valyl-tRNA synthetase
YP_987114.1	TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pol:Bpro_3723 UTP-glucose-1-phosphate uridylyltransferase
YP_987115.1	PFAM: SirA family protein; KEGG: rfr:Rfer_2377 SirA-like
YP_987116.1	PFAM: NUDIX hydrolase; KEGG: pol:Bpro_3725 NUDIX hydrolase
YP_987117.1	catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide
YP_987118.1	KEGG: rso:RSc2574 hypothetical/unknown protein
YP_987119.1	PFAM: conjugation TrbI family protein; KEGG: pau:PA14_30850 TrbI-like protein
YP_987120.1	PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: pau:PA14_30860 TrbG-like protein
YP_987121.1	PFAM: Conjugal transfer protein; KEGG: rme:Rmet_1557 conjugal transfer protein
YP_987122.1	type IV secretion VirB6 family
YP_987123.1	KEGG: bam:Bamb_2009 putative lipoprotein
YP_987124.1	KEGG: rme:Rmet_1554 putative conjugal transfer TrbJ signal peptide protein
YP_987125.1	type IV secretion system VirB4 family
YP_987126.1	KEGG: rme:Rmet_1343 putative conjugal transfer TrbD transmembrane protein
YP_987127.1	PFAM: Conjugal transfer protein TrbC; KEGG: rme:Rmet_1342 conjugal transfer protein TrbC
YP_987128.1	PFAM: type II secretion system protein E; KEGG: rme:Rmet_1341 type II secretion system protein E
YP_987129.1	KEGG: bam:Bamb_2003 CopG domain protein DNA-binding domain protein
YP_987130.1	type IV secretion VirD4 coupling protein family
YP_987131.1	KEGG: rme:Rmet_1547 putative lipoprotein
YP_987132.1	PFAM: transposase IS66; KEGG: rfr:Rfer_3059 transposase IS66
YP_987133.1	PFAM: IS66 Orf2 family protein; KEGG: psb:Psyr_0746 IS66 Orf2 like
YP_987134.1	PFAM: transposase IS3/IS911 family protein; KEGG: pst:PSPTO_5581 hypothetical protein
YP_987135.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pau:PA14_30970 putative transcriptional regulator
YP_987136.1	KEGG: bxe:Bxe_A1158 hypothetical protein
YP_987137.1	PFAM: secretion protein HlyD family protein; KEGG: bxe:Bxe_A1157 MFS multidrug efflux pump, membrane fusion protein, EmrA subfamily
YP_987138.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902
YP_987139.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bxe:Bxe_A1155 MFS efflux system, outer membrane porin
YP_987140.1	PFAM: regulatory protein, TetR; KEGG: bxe:Bxe_A1138 transcriptional regulator, TetR family
YP_987141.1	PFAM: regulatory protein, MarR; KEGG: bxe:Bxe_A1137 transcriptional regulator, MarR family
YP_987142.1	PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein
YP_987143.1	KEGG: rme:Rmet_1258 putative conjugal transfer TRAF transmembrane protein
YP_987144.1	KEGG: pau:PA14_31090 hypothetical protein
YP_987145.1	KEGG: rme:Rmet_3022 hypothetical protein
YP_987146.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: rme:Rmet_3023 cobyrinic acid a,c-diamide synthase
YP_987147.1	KEGG: rme:Rmet_3024 conserved hypothetical replication initiator and transcription repressor protein
YP_987148.1	KEGG: rme:Rmet_1484 hypothetical protein
YP_987149.1	KEGG: rme:Rmet_3026 hypothetical protein
YP_987150.1	KEGG: rme:Rmet_3027 putative lipoprotein
YP_987151.1	PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_3028 transcriptional regulator, XRE family
YP_987152.1	KEGG: xac:XAC2189 hypothetical protein
YP_987153.1	PFAM: protein of unknown function DUF736; KEGG: rso:RSc2613 hypothetical protein
YP_987154.1	KEGG: sfr:Sfri_1670 hypothetical protein
YP_987155.1	KEGG: rme:Rmet_3032 hypothetical protein
YP_987156.1	PFAM: ParB domain protein nuclease; KEGG: rme:Rmet_3033 ParB-like nuclease
YP_987157.1	PFAM: protein of unknown function DUF932; KEGG: rme:Rmet_3034 protein of unknown function DUF932
YP_987159.1	KEGG: psb:Psyr_1555 cobyrinic acid a,c-diamide synthase
YP_987161.1	KEGG: dar:Daro_2335 hypothetical protein
YP_987162.1	KEGG: hch:HCH_07043 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PapS reductase)/FAD synthetase and related enzyme
YP_987164.1	KEGG: bcz:BCZK0828 conserved hypothetical protein; possible ATPase
YP_987165.1	KEGG: hch:HCH_07046 hypothetical protein
YP_987166.1	PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein
YP_987168.1	KEGG: rde:RD1_0808 hypothetical protein
YP_987169.1	KEGG: bxe:Bxe_C1184 predicted transcriptional regulator
YP_987170.1	PFAM: protein of unknown function DUF891; KEGG: bxe:Bxe_C1183 hypothetical protein
YP_987171.1	PFAM: phage integrase family protein; KEGG: pau:PA14_31280 putative integrase
YP_987173.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_987174.1	PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_4894 RNA-binding region RNP-1 (RNA recognition motif)
YP_987175.1	KEGG: cvi:CV3228 hypothetical protein
YP_987176.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cvi:CV3227 hypothetical protein
YP_987177.1	KEGG: dar:Daro_0495 lipoprotein, putative
YP_987178.1	KEGG: dar:Daro_0494 major facilitator superfamily MFS_1
YP_987179.1	KEGG: dar:Daro_0493 hypothetical protein
YP_987180.1	PFAM: chemotaxis sensory transducer; KEGG: reu:Reut_C6240 chemotaxis sensory transducer
YP_987181.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_0492 cyclopropane-fatty-acyl-phospholipid synthase
YP_987182.1	PFAM: protein of unknown function DUF1365; KEGG: cvi:CV3225 hypothetical protein
YP_987183.1	PFAM: FAD dependent oxidoreductase; KEGG: bur:Bcep18194_C6583 FAD dependent oxidoreductase
YP_987184.1	PFAM: regulatory protein, MerR; cobalamin B12-binding domain protein; KEGG: reu:Reut_C6238 regulatory protein, MerR
YP_987185.1	PFAM: Lipocalin family protein; KEGG: reu:Reut_C6237 outer membrane lipoprotein, lipocalin
YP_987188.1	PFAM: LrgA family protein; KEGG: dar:Daro_3105 LrgA
YP_987189.1	PFAM: LrgB family protein; KEGG: reu:Reut_A2795 LrgB-like protein
YP_987190.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rfr:Rfer_4071 transcriptional regulator, LysR family
YP_987191.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: aci:ACIAD1660 glutaryl-CoA dehydrogenase
YP_987192.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rfr:Rfer_4069 L-carnitine dehydratase/bile acid-inducible protein F
YP_987193.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_3194 uncharacterized protein UPF0065
YP_987194.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: bcn:Bcen_2208 transposase IS116/IS110/IS902
YP_987195.1	KEGG: dme:Dmel_CG2839 CG2839
YP_987196.1	KEGG: rso:RSc0392 probable proline-rich transmembrane protein
YP_987197.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: pol:Bpro_3789 NAD-dependent epimerase/dehydratase
YP_987198.1	catalyzes the formation of 3,6-dideoxy-D-glycero-D-glycero-4-hexulose
YP_987199.1	PFAM: protein of unknown function DUF326; KEGG: tbd:Tbd_2742 hypothetical protein
YP_987200.1	PFAM: Uncharacterized protein UPF0065; KEGG: rfr:Rfer_3300 uncharacterized protein UPF0065
YP_987201.1	KEGG: bpa:BPP3629 2-amino-4-hydroxy-6-hydroxymethyldihydropteridi ne pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK
YP_987202.1	TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: rfr:Rfer_2509 poly(A) polymerase
YP_987203.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: rfr:Rfer_2510 HAD-superfamily subfamily IB, PSPase-like
YP_987204.1	PFAM: Chromosomal replication initiator, DnaA; KEGG: rfr:Rfer_2511 chromosomal replication initiator, DnaA
YP_987205.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_987206.1	KEGG: rme:Rmet_5901 hypothetical protein
YP_987207.1	PFAM: UspA domain protein; KEGG: rfr:Rfer_0629 UspA
YP_987208.1	PFAM: protein of unknown function DUF344; KEGG: rme:Rmet_0550 protein of unknown function DUF344
YP_987209.1	KEGG: rfr:Rfer_2526 hypothetical protein
YP_987210.1	TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: pol:Bpro_3569 integral membrane protein MviN
YP_987211.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_987212.1	KEGG: pol:Bpro_3571 hypothetical protein
YP_987213.1	catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine
YP_987214.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_987215.1	PFAM: protein of unknown function UPF0153; KEGG: pfl:PFL_1305 conserved hypothetical protein
YP_987217.1	PFAM: transposase Tn3 family protein; KEGG: bxe:Bxe_C1202 transposase Tn3
YP_987218.1	KEGG: cvi:CV3035 probable transposase
YP_987219.1	PFAM: PHP C-terminal domain protein; KEGG: eba:ebA6802 capsular polysaccharide biosynthesis protein
YP_987220.1	KEGG: noc:Noc_1499 hypothetical protein
YP_987221.1	KEGG: bpm:BURPS1710b_1566 hypothetical protein
YP_987222.1	PFAM: lipopolysaccharide biosynthesis; KEGG: eba:ebA6797 exopolysaccharide biosynthesis protein
YP_987223.1	PFAM: polysaccharide export protein; KEGG: noc:Noc_1525 polysaccharide export protein
YP_987224.1	PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: msu:MS1501 WecC protein
YP_987225.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pae:PA3158 probable oxidoreductase WpbB
YP_987226.1	KEGG: bbr:BB0154 probable acetyltransferase
YP_987228.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; aminotransferase class-III; KEGG: msu:MS1498 WecE protein
YP_987229.1	KEGG: mac:MA2370 ATP-dependent DNA helicase
YP_987230.1	KEGG: syn:sll1543 hypothetical protein
YP_987231.1	KEGG: swo:Swol_2490 hypothetical protein
YP_987232.1	KEGG: mhu:Mhun_2377 polysaccharide biosynthesis protein
YP_987233.1	PFAM: glycosyl transferase, group 1; KEGG: mma:MM1178 glycosyltransferase
YP_987234.1	KEGG: plt:Plut_1854 hypothetical protein
YP_987235.1	PFAM: glycosyl transferase, group 1; KEGG: pfl:PFL_5103 glycosyl transferase, group 1 family protein
YP_987236.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; Polysaccharide biosynthesis C-terminal domain protein; KEGG: eba:ebA5885 hypothetical protein
YP_987237.1	KEGG: net:Neut_1360 conserved hypothetical protein
YP_987238.1	TIGRFAM: PIN domain family protein; KEGG: net:Neut_1359 PIN domain family protein
YP_987239.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: eba:ebA5887 probable NAD dependent epimerase/dehydratase, possibly involved in polysaccharide biosynthesis
YP_987240.1	PFAM: SMC domain protein; KEGG: cch:Cag_0257 ATPase
YP_987241.1	KEGG: cch:Cag_0256 hypothetical protein
YP_987242.1	PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: eba:ebA5890 predicted UDP-N-acetylglucosamine 2-epimerase
YP_987243.1	PFAM: glycosyl transferase, group 1; KEGG: eba:ebA5893 predicted glycosyltransferase
YP_987244.1	PFAM: sugar transferase; KEGG: rme:Rmet_2726 sugar transferase
YP_987245.1	KEGG: rso:RS02341 putative acetyl transferase protein
YP_987246.1	PFAM: VanZ family protein
YP_987247.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rme:Rmet_2724 DegT/DnrJ/EryC1/StrS aminotransferase
YP_987248.1	KEGG: noc:Noc_1503 probable binding-protein-dependent transport system protein
YP_987251.1	PFAM: protein of unknown function UPF0029; KEGG: dar:Daro_1379 hypothetical protein
YP_987252.1	PFAM: Radical SAM N-terminal domain protein; KEGG: rfr:Rfer_2734 radical SAM
YP_987253.1	PFAM: transposase Tn3 family protein; KEGG: bxe:Bxe_C1202 transposase Tn3
YP_987255.1	SMART: regulatory protein, LuxR; KEGG: bam:Bamb_3845 transcriptional regulator, LuxR family
YP_987256.1	KEGG: xcb:XC_2079 YeeC-like protein
YP_987257.1	PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: pol:Bpro_0339 integrase, catalytic region
YP_987258.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rfr:Rfer_4202 IstB-like ATP-binding protein
YP_987259.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5321 ISPsy20, transposase IstA
YP_987260.1	PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mca:MCA1387 arsenate reductase, putative
YP_987261.1	SMART: regulatory protein, ArsR; KEGG: rso:RSp1129 putative arsenical resistance operon repressor transcription regulator protein
YP_987262.1	PFAM: lipid A biosynthesis acyltransferase; KEGG: mxa:MXAN_1057 bacterial lipid A biosynthesis acyltransferase
YP_987263.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nmu:Nmul_A1174 ABC transporter related
YP_987264.1	PFAM: diacylglycerol kinase, catalytic region; KEGG: nmu:Nmul_A0405 diacylglycerol kinase, catalytic region
YP_987265.1	PFAM: fatty acid desaturase; KEGG: rba:RB5740 hypothetical protein-transmembrane prediction
YP_987266.1	KEGG: rfr:Rfer_0612 hypothetical protein
YP_987267.1	KEGG: gox:GOX2055 hypothetical protein
YP_987268.1	KEGG: ccr:CC1159 hypothetical protein
YP_987269.1	PFAM: metallophosphoesterase; KEGG: gox:GOX2053 hypothetical protein
YP_987270.1	PFAM: histidine triad (HIT) protein; KEGG: ccr:CC1157 hypothetical protein
YP_987271.1	PFAM: permease YjgP/YjgQ family protein; KEGG: ccr:CC1156 hypothetical protein
YP_987272.1	PFAM: permease YjgP/YjgQ family protein; KEGG: ccr:CC1155 hypothetical protein
YP_987273.1	KEGG: hne:HNE_1581 putative phosphatidyltransferase
YP_987274.1	KEGG: ccr:CC1154 hypothetical protein
YP_987275.1	KEGG: ccr:CC1153 hypothetical protein
YP_987276.1	PFAM: Nucleotidyl transferase; KEGG: ccr:CC1152 nucleotidyltransferase family protein
YP_987277.1	PFAM: 4'-phosphopantetheinyl transferase; KEGG: bte:BTH_II2340 4-phosphopantetheinyl transferase family protein
YP_987278.1	PFAM: cytochrome P450; KEGG: mxa:MXAN_2304 cytochrome P450 family protein
YP_987279.1	PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; KEGG: sdn:Sden_3532 amino acid adenylation
YP_987280.1	PFAM: AMP-dependent synthetase and ligase; KEGG: nmu:Nmul_A0231 AMP-dependent synthetase and ligase
YP_987281.1	KEGG: gbe:GbCGDNIH1_0240 acyl carrier protein
YP_987282.1	PFAM: aminotransferase, class V; aminotransferase, class I and II; aminotransferase class-III; KEGG: neu:NE1655 aminotransferase class-I
YP_987284.1	KEGG: syf:Synpcc7942_2287 hypothetical protein
YP_987285.1	KEGG: mag:amb2083 predicted nucleoside-diphosphate-sugar epimerase
YP_987286.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KR; KEGG: gbe:GbCGDNIH1_0241 NADH-ubiquinone oxidoreductase 39-40 kDa subunit-like protein
YP_987287.1	KEGG: ade:Adeh_3627 HNH endonuclease
YP_987288.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: bxe:Bxe_A1491 putative cytidine/deoxycytidylate deaminase family protein
YP_987290.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_5343 IstB-like ATP-binding protein
YP_987291.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5344 integrase, catalytic region
YP_987292.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_0990 methyl-accepting chemotaxis sensory transducer
YP_987293.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rso:RSc1092 probable transcriptional regulatory DNA-binding transcription regulator protein
YP_987294.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_0980 oxidoreductase FAD-binding region
YP_987295.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_0983 Rieske (2Fe-2S) region
YP_987296.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_0985 Rieske (2Fe-2S) region
YP_987297.1	PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: sfv:SFV_2586 large terminal subunit of phenylpropionate dioxygenase
YP_987298.1	PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: ssn:SSO_2621 small terminal subunit of phenylpropionate dioxygenase
YP_987299.1	PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein
YP_987300.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: rfr:Rfer_4202 IstB-like ATP-binding protein
YP_987301.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_5321 ISPsy20, transposase IstA
YP_987302.1	KEGG: pol:Bpro_1484 inner-membrane translocator
YP_987303.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1483 ABC transporter related
YP_987304.1	PFAM: ferredoxin; molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; KEGG: pol:Bpro_1481 molybdopterin dehydrogenase, FAD-binding
YP_987305.1	PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: pol:Bpro_1480 xanthine dehydrogenase
YP_987306.1	KEGG: csa:Csal_1723 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_987307.1	PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rfr:Rfer_3168 transcriptional regulator, Crp/Fnr family
YP_987308.1	PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: rfr:Rfer_2030 diguanylate cyclase/phosphodiesterase
YP_987309.1	PFAM: histidine triad (HIT) protein; KEGG: dar:Daro_0004 histidine triad (HIT) protein
YP_987310.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rso:RSp0505 2-hydroxyacid dehydrogenase
YP_987311.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_3211 drug resistance transporter Bcr/CflA subfamily
YP_987312.1	KEGG: rfr:Rfer_1535 tRNA delta(2)-isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase
YP_987313.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3214 ABC transporter related
YP_987314.1	PFAM: heat shock protein Hsp20; KEGG: cvi:CV1177 probable small heat shock protein
YP_987315.1	PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_3224 protein of unknown function DUF214
YP_987316.1	PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rfr:Rfer_1520 pyridoxal-5'-phosphate-dependent enzyme, beta subunit
YP_987317.1	KEGG: pol:Bpro_3228 secreted hydrolase-like
YP_987318.1	PFAM: inner-membrane translocator; KEGG: rme:Rmet_3516 inner-membrane translocator
YP_987319.1	PFAM: inner-membrane translocator; KEGG: reu:Reut_A3368 inner-membrane translocator
YP_987320.1	KEGG: reu:Reut_A3369 extracellular ligand-binding receptor
YP_987321.1	KEGG: rso:RSc3342 putative substrate-binding periplasmic (pbp) ABC transporter protein
YP_987322.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bte:BTH_I3330 branched-chain amino acid ABC transporter, ATP-binding protein
YP_987323.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_3520 ABC transporter-related protein
YP_987324.1	PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: rfr:Rfer_2857 putative transcriptional regulator, ModE family
YP_987325.1	TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: pae:PA1863 molybdate transport system substrate-binding protein
YP_987326.1	TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB0824 molybdenum transport system permease protein
YP_987327.1	KEGG: rfr:Rfer_2860 molybdate ABC transporter, ATP-binding protein; TIGRFAM: molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase
YP_987328.1	PFAM: extracellular solute-binding protein, family 1; KEGG: bpa:BPP1941 putative exported protein
YP_987329.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bbr:BB2128 probable ATP-binding component of ABC transporter
YP_987330.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_2869 binding-protein-dependent transport systems inner membrane component
YP_987331.1	PFAM: regulatory protein, LysR; KEGG: rfr:Rfer_2870 transcriptional regulator of molybdate metabolism, LysR family
YP_987332.1	PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pol:Bpro_4053 TRAP C4-dicarboxylate transport system permease DctM subunit
YP_987333.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: pol:Bpro_4052 tripartite ATP-independent periplasmic transporter, DctQ component
YP_987334.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pol:Bpro_4051 twin-arginine translocation pathway signal
YP_987335.1	PFAM: Malate/L-lactate dehydrogenase; KEGG: psb:Psyr_2143 malate/L-lactate dehydrogenase
YP_987336.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_A0898 major facilitator superfamily (MFS) multidrug efflux pump, Bcr/CflA subfamily
YP_987337.1	PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA3433 acyl-CoA synthase
YP_987338.1	KEGG: rfr:Rfer_2203 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein
YP_987339.1	TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor RpoD domain protein; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: pol:Bpro_3097 sigma 70 (RpoD)
YP_987340.1	KEGG: eba:ebA232 ketopantoate reductase ApbA; TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein
YP_987341.1	KEGG: pol:Bpro_3366 putative protein-S-isoprenylcysteine methyltransferase-like
YP_987342.1	PFAM: Uncharacterized protein UPF0065; KEGG: pol:Bpro_2351 uncharacterized protein UPF0065
YP_987343.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: pol:Bpro_2352 L-carnitine dehydratase/bile acid-inducible protein F
YP_987344.1	PFAM: pyruvate carboxyltransferase; KEGG: pol:Bpro_2353 pyruvate carboxyltransferase
YP_987345.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_2354 transcriptional regulator, LysR family
YP_987346.1	KEGG: pol:Bpro_3120 putative transcriptional regulator
YP_987347.1	PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: rfr:Rfer_1971 peptidylprolyl isomerase, FKBP-type
YP_987348.1	catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit
YP_987349.1	TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: pol:Bpro_2702 polyhydroxyalkanoate synthesis repressor PhaR
YP_987350.1	KEGG: rfr:Rfer_2071 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; RelA/SpoT domain protein
YP_987351.1	PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_2704 alpha/beta hydrolase fold
YP_987352.1	catalyzes the formation of acetoacetate from 3-hydroxybutyrate
YP_987353.1	PFAM: protein of unknown function DUF541; KEGG: pol:Bpro_2712 protein of unknown function DUF541
YP_987354.1	part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation
YP_987355.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_2714 periplasmic sensor signal transduction histidine kinase
YP_987356.1	KEGG: pol:Bpro_2715 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase
YP_987357.1	TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: pol:Bpro_2716 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
YP_987358.1	KEGG: rfr:Rfer_1331 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like
YP_987359.1	KEGG: rme:Rmet_1193 hypothetical protein
YP_987360.1	KEGG: pol:Bpro_2720 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase, subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase, type 3
YP_987361.1	TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: bbr:BB4519 putative exported protein
YP_987362.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: reu:Reut_B3694 lysine exporter protein (LysE/YggA)
YP_987363.1	specific inhibitor of chromosomal initiation of replication in vitro; inds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport
YP_987364.1	TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: rfr:Rfer_1883 transcriptional regulator, BadM/Rrf2 family
YP_987365.1	PFAM: protein of unknown function DUF542, ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: reu:Reut_B5056 protein of unknown function DUF542, ScdA N-terminal:hemerythrin HHE cation binding region
YP_987366.1	KEGG: rme:Rmet_3997 hypothetical protein
YP_987367.1	KEGG: par:Psyc_0620 hypothetical protein
YP_987368.1	PFAM: aldo/keto reductase; KEGG: rfr:Rfer_3469 aldo/keto reductase
YP_987369.1	PFAM: SlyX family protein; KEGG: bbr:BB1266 SlyX protein
YP_987370.1	PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2746 aminotransferase, class I and II
YP_987371.1	KEGG: pol:Bpro_2747 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop
YP_987372.1	KEGG: bur:Bcep18194_B2655 hypothetical protein
YP_987373.1	KEGG: bur:Bcep18194_C7091 hypothetical protein
YP_987374.1	PFAM: Tetratricopeptide TPR_4; KEGG: pst:PSPTO_1193 hypothetical protein
YP_987375.1	PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: rfr:Rfer_2611 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
YP_987376.1	TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: dar:Daro_0141 nitroreductase
YP_987377.1	TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: pol:Bpro_2760 cobyric acid synthase CobQ
YP_987378.1	PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_2761 aminotransferase, class I and II
YP_987379.1	TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: rfr:Rfer_2616 cobalamin biosynthesis protein CobD
YP_987380.1	KEGG: reu:Reut_A0400 prokaryotic N-terminal methylation site
YP_987381.1	KEGG: rso:RS05337 putative type-4 fimbrial pilin related signal peptide protein
YP_987382.1	TIGRFAM: type IV pilus modification protein PilV; KEGG: lpf:lpl0668 type IV pilus assembly protein PilV
YP_987383.1	PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase
YP_987385.1	KEGG: rso:RSc0726 probable transmembrane protein
YP_987386.1	KEGG: rfr:Rfer_2662 putative transmembrane protein
YP_987387.1	KEGG: pae:PA4554 type 4 fimbrial biogenesis protein PilY1
YP_987388.1	KEGG: net:Neut_1832 fimbrial protein pilin
YP_987389.1	KEGG: pol:Bpro_2883 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein
YP_987390.1	PFAM: phospholipase D/Transphosphatidylase; KEGG: pol:Bpro_4230 phospholipase D/transphosphatidylase
YP_987391.1	PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_3425 dihydrouridine synthase, DuS
YP_987392.1	PFAM: methyltransferase small; KEGG: eba:ebA5030 hypothetical protein
YP_987393.1	PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_2769 GCN5-related N-acetyltransferase
YP_987394.1	PFAM: aldehyde dehydrogenase; KEGG: mlo:mlr4051 probable coniferyl aldehyde dehydrogenase
YP_987395.1	PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: ava:Ava_B0058 glutathione-dependent formaldehyde-activating, GFA
YP_987396.1	KEGG: rfr:Rfer_2034 hypothetical protein
YP_987397.1	PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_2201 ATPase AAA-2
YP_987398.1	PFAM: molybdopterin biosynthesis MoaE; KEGG: rfr:Rfer_1917 molybdopterin biosynthesis MoaE
YP_987401.1	TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; KEGG: rfr:Rfer_1916 molybdopterin converting factor, subunit 1
YP_987402.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: pol:Bpro_2193 MoeA-like, domain I and II
YP_987403.1	TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: pol:Bpro_2192 molybdopterin-guanine dinucleotide biosynthesis protein B
YP_987404.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_987405.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_987406.1	broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor
YP_987407.1	PFAM: protein of unknown function DUF498; KEGG: pol:Bpro_2188 protein of unknown function DUF498
YP_987408.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pol:Bpro_2187 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_987409.1	PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: pol:Bpro_2186 PhoH-like protein
YP_987410.1	KEGG: nmu:Nmul_A1081 hypothetical protein
YP_987411.1	KEGG: rfr:Rfer_2580 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: AAA ATPase
YP_987412.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_987413.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_987414.1	KEGG: rfr:Rfer_2194 putative primosomal replication protein
YP_987415.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_987416.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_987417.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_987418.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_987419.1	PFAM: peptidase U32; KEGG: rfr:Rfer_0136 peptidase U32
YP_987420.1	PFAM: peptidase U32; KEGG: rfr:Rfer_0135 peptidase U32
YP_987421.1	KEGG: rfr:Rfer_0134 hypothetical protein
YP_987422.1	KEGG: bte:BTH_I1807 hypothetical protein
YP_987423.1	TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: reu:Reut_A3048 phenylacrylic acid decarboxylase
YP_987424.1	TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: rfr:Rfer_0132 carboxylyase-related protein
YP_987425.1	PFAM: cytochrome P450; KEGG: bms:BRA0388 heme-thiolate monooxygenase, putative
YP_987426.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: rfr:Rfer_1967 beta-lactamase-like
YP_987427.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_3607 transcriptional regulator, LysR family
YP_987428.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_987429.1	PFAM: Entericidin EcnAB
YP_987431.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_987432.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_987433.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr3115 short chain dehydrogenase
YP_987434.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_987435.1	KEGG: pol:Bpro_3613 putative transmembrane protein
YP_987436.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_987437.1	PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: rfr:Rfer_1789 phosphoribosylanthranilate isomerase
YP_987438.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_987439.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_987440.1	TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: pol:Bpro_3618 acetyl-CoA carboxylase, carboxyl transferase, beta subunit
YP_987441.1	PFAM: protein of unknown function YGGT; KEGG: rfr:Rfer_1785 protein of unknown function YGGT
YP_987442.1	PFAM: peptidase S16, lon domain protein; KEGG: pol:Bpro_3619 peptidase S16, lon-like
YP_987443.1	PFAM: glycosyl transferase, group 1; KEGG: rme:Rmet_2717 glycosyl transferase, group 1
YP_987444.1	PFAM: sugar transferase; KEGG: rme:Rmet_2718 sugar transferase
YP_987445.1	KEGG: bja:blr2372 hypothetical protein
YP_987446.1	PFAM: glycosyl transferase, group 1; KEGG: rme:Rmet_2717 glycosyl transferase, group 1
YP_987447.1	KEGG: bte:BTH_I1358 putative glycosyltransferase
YP_987449.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_987450.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; KEGG: dar:Daro_1597 GGDEF
YP_987451.1	KEGG: pae:PA5251 hypothetical protein
YP_987452.1	PFAM: Extracellular ligand-binding receptor; KEGG: bbr:BB2916 leu/ile/val-binding protein precursor
YP_987453.1	PFAM: inner-membrane translocator; KEGG: bbr:BB2908 high-affinity branched-chain amino acid transport system, permease protein
YP_987454.1	Part of the ABC transporter complex LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_987455.1	Part of the ABC transporter complexes LivFGHMJ and LivFGHMK involved in the high-affinity transport of branched-chain amino acids; LivFGHMK is specific for the transport of leucine, while LivFGHMJ is a transporter for leucine, isoleucine, and valine
YP_987456.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bps:BPSS0579 high-affinity branched-chain amino acid transport ATP-binding protein
YP_987457.1	KEGG: ddi:DDB0205680 hypothetical protein
YP_987458.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: nmu:Nmul_A0996 alkylhydroperoxidase AhpD core
YP_987459.1	PFAM: phosphofructokinase; KEGG: sru:SRU_2111 phosphofructokinase subfamily
YP_987460.1	PFAM: glycoside hydrolase, family 3 domain protein; KEGG: rfr:Rfer_1754 beta-N-acetylhexosaminidase
YP_987461.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_987462.1	involved in the de novo synthesis of pyridoxine (Vitamin B6)
YP_987463.1	KEGG: mfa:Mfla_0595 hypothetical protein
YP_987464.1	TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: rfr:Rfer_1751 DNA repair protein RecO
YP_987465.1	TIGRFAM: small GTP-binding protein; GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; KH, type 2 domain protein; Miro domain protein; KEGG: rfr:Rfer_1744 GTP-binding protein Era
YP_987466.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_987467.1	KEGG: rfr:Rfer_1742 putative transmembrane protein
YP_987468.1	KEGG: rfr:Rfer_1741 peptidase S26A, signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B
YP_987469.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_987470.1	TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: rfr:Rfer_1739 peptidase S1C, Do
YP_987471.1	PFAM: MucB/RseB family protein; KEGG: pol:Bpro_3641 putative sigma E regulatory protein, MucB/RseB
YP_987472.1	PFAM: Anti sigma-E protein RseA family protein; KEGG: rfr:Rfer_1737 anti sigma-E protein, RseA, Burkholderiaceae specific
YP_987473.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response
YP_987474.1	KEGG: rfr:Rfer_1735 hypothetical protein
YP_987475.1	PFAM: beta-ketoacyl synthase; KEGG: rfr:Rfer_1734 beta-ketoacyl synthase
YP_987476.1	carries the fatty acid chain in fatty acid biosynthesis
YP_987477.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: rfr:Rfer_1732 3-oxoacyl-(acyl-carrier-protein) reductase
YP_987478.1	TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: pol:Bpro_3648 malonyl CoA-acyl carrier protein transacylase
YP_987479.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_987480.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_987481.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_987482.1	PFAM: protein of unknown function DUF177; KEGG: rfr:Rfer_1727 protein of unknown function DUF177
YP_987483.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: pol:Bpro_3654 maf protein
YP_987484.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pol:Bpro_3655 putative transmembrane protein
YP_987485.1	PFAM: peptidase S49; KEGG: rfr:Rfer_1724 peptidase S49
YP_987486.1	PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3657 Rieske (2Fe-2S) region
YP_987487.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pol:Bpro_3658 HAD-superfamily hydrolase, subfamily IA, variant 1
YP_987488.1	TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: pol:Bpro_3660 ribonuclease, Rne/Rng family
YP_987489.1	PFAM: protein of unknown function DUF328; KEGG: rfr:Rfer_2372 protein of unknown function DUF328
YP_987491.1	PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: pol:Bpro_3712 procollagen-proline, 2-oxoglutarate-4-dioxygenase
YP_987492.1	catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis
YP_987493.1	TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold domain protein; KEGG: rfr:Rfer_0120 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor
YP_987494.1	PFAM: UMUC domain protein DNA-repair protein; KEGG: rfr:Rfer_2353 DNA-directed DNA polymerase
YP_987495.1	KEGG: nha:Nham_0475 hypothetical protein
YP_987496.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pol:Bpro_3678 L-lactate dehydrogenase (cytochrome)
YP_987497.1	TIGRFAM: penicillin-binding protein 1C; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: reu:Reut_A3383 penicillin-binding protein 1C
YP_987498.1	KEGG: bbr:BB2283 hypothetical protein
YP_987499.1	PFAM: protein of unknown function DUF1232; KEGG: gme:Gmet_2189 protein of unknown function DUF1232
YP_987500.1	KEGG: bps:BPSS1335 hypothetical protein
YP_987501.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rso:RSc1208 hypothetical protein
YP_987502.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4935 inner membrane component of binding-protein-dependent transport system
YP_987503.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbr:BB4934 inner membrane component of binding-protein-dependent transport system
YP_987504.1	PFAM: extracellular solute-binding protein, family 1; KEGG: bbr:BB4933 probable extracellular solute-binding protein
YP_987505.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bpe:BP0122 sugar ABC transporter, ATP-binding protein
YP_987506.1	TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: bps:BPSS1310 putative BCCT (betaine/carnitine/choline) family transporter
YP_987507.1	PFAM: alpha-2-macroglobulin domain protein; KEGG: reu:Reut_A3385 alpha-2-macroglobulin, N-terminal
YP_987508.1	PFAM: Catalase domain protein; KEGG: xac:XAC1211 catalase
YP_987509.1	PFAM: Uncharacterized protein UPF0065; KEGG: rfr:Rfer_3194 uncharacterized protein UPF0065
YP_987510.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_987511.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; KEGG: rfr:Rfer_1711 histidine kinase internal protein
YP_987512.1	PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: pol:Bpro_3670 transcriptional regulator, LytR/AlgR family
YP_987513.1	PFAM: zinc/iron permease; KEGG: pol:Bpro_1734 zinc/iron permease
YP_987514.1	PFAM: dienelactone hydrolase; KEGG: pol:Bpro_1733 carboxymethylenebutenolidase
YP_987515.1	KEGG: pol:Bpro_1729 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2
YP_987517.1	KEGG: pol:Bpro_1728 hypothetical protein
YP_987518.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine
YP_987519.1	KEGG: pol:Bpro_1726 hypothetical protein
YP_987520.1	PFAM: OmpA/MotB domain protein; KEGG: gvi:glr1828 probable outer membrane protein
YP_987521.1	KEGG: gvi:glr1827 unknown protein
YP_987522.1	PFAM: UvrD/REP helicase; KEGG: pol:Bpro_1723 UvrD/REP helicase
YP_987523.1	KEGG: rfr:Rfer_3036 hypothetical protein
YP_987524.1	TIGRFAM: guanosine monophosphate reductase; PFAM: IMP dehydrogenase/GMP reductase; KEGG: rfr:Rfer_3037 guanosine monophosphate reductase
YP_987527.1	KEGG: son:SO4261 hypothetical protein
YP_987529.1	PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase
YP_987530.1	KEGG: bps:BPSL1146 hypothetical protein
YP_987533.1	KEGG: eba:ebD32 hypothetical protein
YP_987534.1	KEGG: pol:Bpro_1532 hypothetical protein
YP_987536.1	KEGG: bbr:BB1688 hypothetical protein
YP_987537.1	PFAM: protein of unknown function DUF497; KEGG: bbr:BB1689 hypothetical protein
YP_987538.1	PFAM: phage integrase family protein; KEGG: bcn:Bcen_0845 phage integrase
YP_987539.1	PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: eca:ECA1829 putative Crp/Fnr-family of transcriptional regulator
YP_987540.1	KEGG: rfr:Rfer_0616 hypothetical protein
YP_987541.1	PFAM: protein of unknown function DUF461; KEGG: eba:ebA6147 hypothetical protein
YP_987542.1	TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_0389 drug resistance transporter Bcr/CflA subfamily
YP_987543.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: rfr:Rfer_1413 DEAD/DEAH box helicase-like
YP_987544.1	3'-5' exoribonuclease specific for small oligoribonuclotides
YP_987545.1	PFAM: peptidase M48, Ste24p; KEGG: rfr:Rfer_1411 STE24 endopeptidase
YP_987546.1	PFAM: transcriptional coactivator/pterin dehydratase; KEGG: rfr:Rfer_1410 transcriptional coactivator/pterin dehydratase
YP_987547.1	TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: rfr:Rfer_1409 GTPase EngC
YP_987548.1	PFAM: cobalamin biosynthesis protein CbiB; KEGG: pol:Bpro_1695 hypothetical protein
YP_987549.1	PFAM: NUDIX hydrolase; KEGG: rfr:Rfer_1406 NUDIX hydrolase
YP_987550.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_987551.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_987552.1	Essential for efficient processing of 16S rRNA
YP_987553.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_987554.1	PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_1689 GCN5-related N-acetyltransferase
YP_987555.1	KEGG: rfr:Rfer_1400 hypothetical protein
YP_987556.1	PFAM: phosphate transporter; KEGG: pol:Bpro_1687 phosphate transporter
YP_987557.1	PFAM: protein of unknown function DUF47; KEGG: rfr:Rfer_1398 protein of unknown function DUF47
YP_987558.1	PFAM: protein of unknown function DUF486; KEGG: pol:Bpro_1685 protein of unknown function DUF486
YP_987559.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3793 ABC transporter related
YP_987560.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rfr:Rfer_3170 ABC transporter related
YP_987561.1	PFAM: inner-membrane translocator; KEGG: rfr:Rfer_3171 inner-membrane translocator
YP_987562.1	PFAM: inner-membrane translocator; KEGG: rfr:Rfer_3172 inner-membrane translocator
YP_987563.1	PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_3176 AAA ATPase
YP_987564.1	TIGRFAM: integron integrase; PFAM: phage integrase family protein; KEGG: tbd:Tbd_1215 integron integrase
YP_987565.1	PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein
YP_987566.1	PFAM: protein of unknown function DUF1010
YP_987568.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase
YP_987570.1	PFAM: protein of unknown function DUF1010
YP_987571.1	PFAM: protein of unknown function DUF1010
YP_987572.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase
YP_987573.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase
YP_987574.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase
YP_987575.1	KEGG: eba:ebA2554 hypothetical protein
YP_987576.1	PFAM: Uracil-DNA glycosylase superfamily; KEGG: bte:BTH_II0381 uracil DNA glycosylase superfamily superfamily
YP_987577.1	PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: rfr:Rfer_3177 outer membrane lipoprotein carrier protein LolA
YP_987578.1	PFAM: cell divisionFtsK/SpoIIIE; KEGG: pol:Bpro_3799 cell divisionFtsK/SpoIIIE
YP_987579.1	TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_3179 thioredoxin reductase
YP_987580.1	required for 70S ribosome assembly
YP_987581.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_987582.1	PFAM: fatty acid desaturase; KEGG: pol:Bpro_3804 fatty acid desaturase
YP_987583.1	PFAM: Fmu (Sun) domain protein; KEGG: rfr:Rfer_3183 Fmu (Sun)
YP_987584.1	PFAM: peptidase M48, Ste24p; KEGG: pol:Bpro_3806 peptidase M48, Ste24p
YP_987585.1	PFAM: protein of unknown function DUF1653; KEGG: pol:Bpro_3807 protein of unknown function DUF1653
YP_987586.1	KEGG: tbd:Tbd_2249 hypothetical protein
YP_987587.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_987588.1	PFAM: protein of unknown function DUF480; KEGG: rfr:Rfer_1648 protein of unknown function DUF480
YP_987589.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_3845 acyl-CoA dehydrogenase-like
YP_987590.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_1645 acyl-CoA dehydrogenase-like
YP_987591.1	PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein
YP_987592.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: xac:XAC4125 hypothetical protein
YP_987593.1	PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: pol:Bpro_3847 HNH endonuclease
YP_987594.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_987595.1	TIGRFAM: isoleucyl-tRNA synthetase; KEGG: pol:Bpro_3849 isoleucyl-tRNA synthetase
YP_987596.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_987597.1	TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Pi-cotransporter; KEGG: pol:Bpro_3851 Na/Pi cotransporter II-related
YP_987598.1	KEGG: pae:PA2026 conserved hypothetical protein
YP_987599.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase
YP_987600.1	PFAM: NUDIX hydrolase; KEGG: pol:Bpro_3852 NUDIX hydrolase
YP_987601.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: rfr:Rfer_1426 protein of unknown function DUF6, transmembrane
YP_987602.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rfr:Rfer_1428 putative transport protein
YP_987603.1	PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase
YP_987604.1	PFAM: protein of unknown function DUF112, transmembrane; KEGG: pol:Bpro_3880 protein of unknown function DUF112, transmembrane
YP_987605.1	PFAM: protein of unknown function DUF1468; KEGG: pol:Bpro_3881 protein of unknown function DUF1468
YP_987606.1	PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: rfr:Rfer_3214 type II secretion system protein E
YP_987607.1	KEGG: rfr:Rfer_3215 hypothetical protein
YP_987608.1	KEGG: rfr:Rfer_3216 hypothetical protein
YP_987609.1	PFAM: TatD-related deoxyribonuclease; KEGG: rfr:Rfer_3221 TatD-related deoxyribonuclease
YP_987610.1	KEGG: rfr:Rfer_0021 hypothetical protein
YP_987611.1	PFAM: regulatory protein, MarR; regulatory protein, ArsR; transcriptional regulator TrmB; KEGG: eca:ECA3780 ArsR-family transcriptional regulator
YP_987612.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rme:Rmet_2368 alkylhydroperoxidase AhpD core
YP_987613.1	KEGG: pol:Bpro_1015 lipoprotein releasing system, ATP-binding protein; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase
YP_987614.1	TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3232 lipoprotein releasing system, transmembrane protein, LolC/E family
YP_987615.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pol:Bpro_3128 glycerophosphoryl diester phosphodiesterase
YP_987616.1	KEGG: rfr:Rfer_3233 hypothetical protein
YP_987617.1	TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: rfr:Rfer_3234 single-stranded-DNA-specific exonuclease RecJ
YP_987618.1	KEGG: eca:ECA4460 putative lipoprotein
YP_987619.1	PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein
YP_987620.1	KEGG: bte:BTH_I3205 hypothetical protein
YP_987621.1	PFAM: protein of unknown function DUF799; KEGG: psp:PSPPH_1127 lipoprotein, putative
YP_987622.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2507 methyl-accepting chemotaxis sensory transducer
YP_987623.1	PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pol:Bpro_1005 PHP-like
YP_987624.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: rfr:Rfer_3238 SUA5/YciO/YrdC/YwlC
YP_987625.1	PFAM: von Willebrand factor, type A; KEGG: nmu:Nmul_A1253 von Willebrand factor, type A
YP_987626.1	PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: nmu:Nmul_A1254 ATPase associated with various cellular activities, AAA_5
YP_987627.1	PFAM: cytochrome c oxidase, subunit I; KEGG: tbd:Tbd_0823 nitric-oxide reductase subunit B
YP_987628.1	PFAM: cytochrome c, class I; KEGG: tbd:Tbd_0822 nitric oxide reductase, cytochrome c-containing subunit
YP_987629.1	PFAM: peptidase M50; KEGG: rfr:Rfer_3239 peptidase M50
YP_987630.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_987632.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase
YP_987633.1	PFAM: EAL domain protein; KEGG: pfl:PFL_0280 EAL domain protein
YP_987634.1	KEGG: net:Neut_0367 hypothetical protein
YP_987635.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_987636.1	PFAM: CBS domain containing protein; KEGG: rfr:Rfer_1632 CBS domain containing membrane protein
YP_987637.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: rme:Rmet_4765 protein of unknown function DUF21
YP_987638.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_987639.1	KEGG: pol:Bpro_0950 peptidylprolyl isomerase, FKBP-type
YP_987640.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_987641.1	KEGG: gvi:gll2885 hypothetical protein
YP_987642.1	PFAM: Smr protein/MutS2; KEGG: pol:Bpro_0947 Smr protein/MutS2
YP_987643.1	PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: bte:BTH_I0372 2',3'-cyclic-nucleotide 2'-phosphodiesterase
YP_987644.1	PFAM: globin; KEGG: pol:Bpro_0945 globin
YP_987645.1	PFAM: zinc finger, DksA/TraR C4-type; KEGG: pol:Bpro_0100 transcriptional regulators, TraR/DksA family
YP_987646.1	KEGG: nmu:Nmul_A0912 hypothetical protein
YP_987648.1	PFAM: protein of unknown function DUF214; KEGG: rfr:Rfer_3255 protein of unknown function DUF214
YP_987649.1	PFAM: formate dehydrogenase, subunit FdhD; KEGG: rfr:Rfer_3256 formate dehydrogenase, subunit FdhD
YP_987650.1	KEGG: pol:Bpro_0941 hypothetical protein
YP_987651.1	TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: bbr:BB2124 formate dehydrogenase subunit C precursor
YP_987652.1	KEGG: pol:Bpro_0939 putative lipoprotein
YP_987653.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_3260 4Fe-4S ferredoxin, iron-sulfur binding
YP_987654.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rfr:Rfer_3261 twin-arginine translocation pathway signal
YP_987656.1	PFAM: cytoplasmic chaperone TorD family protein; KEGG: rfr:Rfer_3263 cytoplasmic chaperone TorD
YP_987657.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: bbr:BB2119 putative iron-sulfur binding protein
YP_987658.1	KEGG: rfr:Rfer_3265 hypothetical protein
YP_987659.1	KEGG: pol:Bpro_0932 hypothetical protein
YP_987660.1	TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: rfr:Rfer_3269 formate dehydrogenase, alpha subunit
YP_987661.1	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: rfr:Rfer_3270 NADH dehydrogenase (quinone)
YP_987663.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_987664.1	KEGG: abo:ABO_1368 cation efflux system permease, putative
YP_987666.1	PFAM: protein of unknown function DUF59; KEGG: rfr:Rfer_3272 putative iron sulfur binding protein
YP_987667.1	KEGG: rfr:Rfer_4140 C4-dicarboxylate transporter/malic acid transport protein
YP_987668.1	KEGG: rfr:Rfer_4140 C4-dicarboxylate transporter/malic acid transport protein
YP_987669.1	TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rme:Rmet_3860 selenide, water dikinase
YP_987670.1	catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
YP_987671.1	PFAM: restriction endonuclease; KEGG: rfr:Rfer_1543 hypothetical protein
YP_987672.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_987674.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ppu:PP_4508 transcriptional regulator, AraC family
YP_987675.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: rfr:Rfer_3510 fumarate reductase/succinate dehydrogenase flavoprotein-like
YP_987676.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ccr:CC1151 L-lactate dehydrogenase
YP_987677.1	thiamine-pyrophosphate requiring enzyme
YP_987678.1	PFAM: protein of unknown function DUF161; KEGG: ret:RHE_CH00545 hypothetical protein
YP_987679.1	KEGG: pol:Bpro_0908 putative lipoprotein
YP_987680.1	KEGG: pol:Bpro_0907 hypothetical protein
YP_987681.1	PFAM: chromosome segregation and condensation protein ScpA; KEGG: rfr:Rfer_3030 chromosome segregation and condensation protein ScpA
YP_987682.1	KEGG: pol:Bpro_0905 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase
YP_987683.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_987684.1	PFAM: 5-carboxymethyl-2-hydroxymuconate isomerase; KEGG: pfl:PFL_1486 5-carboxymethyl-2-hydroxymuconate isomerase, putative
YP_987685.1	TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; KEGG: pol:Bpro_0904 para-aminobenzoate synthase, component I
YP_987686.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_987687.1	KEGG: pol:Bpro_0902 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase
YP_987688.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_987689.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_987690.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_987691.1	molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA
YP_987692.1	TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: rfr:Rfer_1311 glutaredoxin, GrxC
YP_987693.1	PFAM: Rhodanese domain protein; KEGG: rfr:Rfer_1310 rhodanese-like
YP_987694.1	2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_987695.1	KEGG: pol:Bpro_0885 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41
YP_987696.1	PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: rfr:Rfer_1307 UBA/ThiF-type NAD/FAD binding protein
YP_987697.1	PFAM: response regulator receiver; KEGG: pol:Bpro_0882 response regulator receiver domain protein (CheY-like)
YP_987698.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: pol:Bpro_0881 two component transcriptional regulator, LuxR family
YP_987699.1	PFAM: ATP-binding region, ATPase domain protein domain protein; CHASE3 domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: pol:Bpro_0880 multi-sensor signal transduction histidine kinase
YP_987700.1	PFAM: protein of unknown function DUF1328; KEGG: pol:Bpro_0879 protein of unknown function DUF1328
YP_987701.1	KEGG: pol:Bpro_0878 hypothetical protein
YP_987702.1	PFAM: Rubrerythrin; Ferritin, Dps family protein; KEGG: reu:Reut_A2901 rubrerythrin:ferritin and Dps
YP_987703.1	PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: pol:Bpro_0875 transport-associated
YP_987704.1	KEGG: hch:HCH_03595 hypothetical protein
YP_987705.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_987706.1	TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: rfr:Rfer_1668 conserved hypothetical protein 95
YP_987707.1	PFAM: peptidase M16 domain protein; KEGG: rfr:Rfer_1670 peptidase M16-like
YP_987708.1	PFAM: peptidase M16 domain protein; KEGG: rfr:Rfer_1671 peptidase M16-like
YP_987709.1	KEGG: pol:Bpro_1278 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase
YP_987710.1	PFAM: CutA1 divalent ion tolerance protein; KEGG: cyb:CYB_2195 divalent-cation tolerance protein CutA
YP_987711.1	TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 domain protein; KEGG: pol:Bpro_1256 sigma 32 (RpoH)
YP_987712.1	PFAM: Uncharacterized protein UPF0065; KEGG: rfr:Rfer_1691 uncharacterized protein UPF0065
YP_987713.1	PFAM: cyclic nucleotide-binding; KEGG: fra:Francci3_4286 transcriptional regulator, Crp/Fnr family
YP_987714.1	KEGG: rfr:Rfer_2220 diguanylate cyclase/phosphodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_987715.1	PFAM: electron transport protein SCO1/SenC; KEGG: rfr:Rfer_1690 electron transport protein SCO1/SenC
YP_987716.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_987717.1	PFAM: cytochrome oxidase assembly; KEGG: rfr:Rfer_1688 cytochrome oxidase assembly
YP_987718.1	KEGG: rfr:Rfer_1687 hypothetical protein
YP_987719.1	KEGG: pol:Bpro_1251 putative transmembrane cytochrome oxidase
YP_987720.1	KEGG: pol:Bpro_1250 putative transmembrane protein
YP_987721.1	PFAM: cytochrome c oxidase, subunit III; KEGG: pol:Bpro_1249 cytochrome c oxidase, subunit III
YP_987722.1	KEGG: pol:Bpro_1248 hypothetical protein
YP_987723.1	involved in the insertion of copper into subunit I of cytochrome C oxidase
YP_987725.1	PFAM: cytochrome c oxidase, subunit I; KEGG: rfr:Rfer_1681 cytochrome-c oxidase
YP_987726.1	PFAM: cytochrome c oxidase, subunit II; cytochrome c, class I; cytochrome C oxidase subunit II, transmembrane region; KEGG: pol:Bpro_1245 cytochrome c oxidase, subunit II
YP_987728.1	KEGG: pol:Bpro_1243 biotin synthesis protein BioC
YP_987729.1	KEGG: rfr:Rfer_1678 ComF family protein
YP_987730.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: pol:Bpro_1241 RNA methyltransferase TrmH, group 2
YP_987731.1	PFAM: MaoC domain protein dehydratase; KEGG: pol:Bpro_1240 MaoC-like dehydratase
YP_987732.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pol:Bpro_1239 cobyrinic acid a,c-diamide synthase
YP_987733.1	PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: pol:Bpro_2660 lysine exporter protein (LysE/YggA)
YP_987734.1	TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; KEGG: pol:Bpro_1237 potassium efflux system protein
YP_987735.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B5589 hypothetical protein
YP_987736.1	TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: pen:PSEEN1168 3-oxoadipate enol-lactonase II (beta-ketoadipate enol-lactone hydrolase II)
YP_987737.1	KEGG: rfr:Rfer_0226 beta-ketoadipyl CoA thiolase; TIGRFAM: acetyl-CoA acetyltransferases; beta-ketoadipyl CoA thiolase; PFAM: Thiolase
YP_987738.1	KEGG: pol:Bpro_1230 3-oxoacid CoA-transferase, subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase
YP_987739.1	KEGG: pol:Bpro_1229 3-oxoacid CoA-transferase, subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase
YP_987740.1	TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory proteins, IclR; KEGG: pol:Bpro_1228 transcriptional regulator, IclR family
YP_987741.1	KEGG: pol:Bpro_1226 hypothetical protein
YP_987742.1	PFAM: UspA domain protein; KEGG: ppu:PP_2648 universal stress protein family
YP_987743.1	PFAM: cytochrome c, class I; KEGG: pol:Bpro_1223 cytochrome c, class I
YP_987744.1	PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pol:Bpro_1222 ATPase associated with various cellular activities, AAA_5
YP_987745.1	KEGG: pol:Bpro_1221 hypothetical protein
YP_987746.1	PFAM: GCN5-related N-acetyltransferase; KEGG: pol:Bpro_1220 hypothetical protein
YP_987747.1	KEGG: rfr:Rfer_1591 hypothetical protein
YP_987748.1	PFAM: surface antigen (D15); KEGG: rfr:Rfer_1592 surface antigen (D15)
YP_987749.1	PFAM: protein of unknown function DUF490; KEGG: rfr:Rfer_1593 protein of unknown function DUF490
YP_987750.1	KEGG: pcr:Pcryo_0811 17 kDa surface antigen
YP_987751.1	PFAM: phospholipase D/Transphosphatidylase; KEGG: tdn:Tmden_1156 phospholipase D/transphosphatidylase
YP_987752.1	TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: pfl:PFL_4456 arsenate reductase
YP_987753.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_1594 binding-protein-dependent transport systems inner membrane component
YP_987754.1	PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_1148 ABC transporter related
YP_987755.1	KEGG: sal:Sala_1097 hypothetical protein
YP_987756.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: pol:Bpro_1147 phospholipid/glycerol acyltransferase
YP_987757.1	PFAM: amidohydrolase; KEGG: rfr:Rfer_1381 amidohydrolase
YP_987758.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_987759.1	PFAM: phosphoribosyltransferase; KEGG: pol:Bpro_1144 phosphoribosyltransferase
YP_987760.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_987761.1	PFAM: protein of unknown function DUF179; KEGG: pol:Bpro_1142 protein of unknown function DUF179
YP_987762.1	PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: pol:Bpro_1140 CheA signal transduction histidine kinases
YP_987763.1	PFAM: chemotaxis sensory transducer; KEGG: rfr:Rfer_1374 methyl-accepting chemotaxis sensory transducer
YP_987764.1	PFAM: CheW domain protein; KEGG: pol:Bpro_1138 CheW-like protein
YP_987765.1	PFAM: response regulator receiver; KEGG: pol:Bpro_1137 response regulator receiver domain protein (CheY-like)
YP_987766.1	PFAM: response regulator receiver; KEGG: rfr:Rfer_1371 response regulator receiver domain protein
YP_987767.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pol:Bpro_1135 rubredoxin-type Fe(Cys)4 protein
YP_987768.1	PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: pol:Bpro_1134 putative phosphomethylpyrimidine kinase
YP_987769.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_987770.1	PFAM: Alkaline phosphatase; KEGG: son:SO0806 alkaline phosphatase, putative
YP_987771.1	PFAM: cytochrome c, class I; KEGG: bbr:BB4215 cytochrome c552 precursor
YP_987772.1	involved in de novo purine biosynthesis
YP_987773.1	PFAM: helix-turn-helix, Fis-type; KEGG: pol:Bpro_1131 transcriptional regulator, fis family
YP_987774.1	TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: pol:Bpro_1130 dihydrouridine synthase TIM-barrel protein nifR3
YP_987775.1	KEGG: pol:Bpro_1129 hypothetical protein
YP_987776.1	PFAM: HipA domain protein; KEGG: bam:Bamb_3753 HipA domain protein
YP_987777.1	PFAM: helix-turn-helix domain protein; KEGG: plu:plu2422 hypothetical protein
YP_987778.1	PFAM: helix-turn-helix domain protein; KEGG: xcv:XCV2619 hypothetical protein
YP_987781.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: pol:Bpro_1939 IstB-like ATP-binding protein
YP_987782.1	PFAM: Integrase, catalytic region; KEGG: pol:Bpro_1938 integrase, catalytic region
YP_987784.1	KEGG: sat:SYN_02013 hypothetical cytosolic protein
YP_987785.1	KEGG: rso:RS05533 hypothetical protein
YP_987786.1	PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: bam:Bamb_3094 AAA ATPase, central domain protein
YP_987788.1	KEGG: pha:PSHAa1245 hypothetical protein
YP_987789.1	KEGG: pfl:PFL_5240 hypothetical protein
YP_987790.1	KEGG: ppu:PP_0695 hypothetical protein
YP_987791.1	PFAM: protein of unknown function DUF262; KEGG: rfr:Rfer_1061 protein of unknown function DUF262
YP_987792.1	PFAM: AAA-4 family protein; KEGG: aeh:Mlg_1541 putative transcriptional regulator
YP_987793.1	PFAM: SMC domain protein; KEGG: aeh:Mlg_1540 SMC domain protein
YP_987794.1	KEGG: neu:NE2527 restriction enzymes type I helicase subunits and related helicases; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like
YP_987795.1	KEGG: neu:NE2526 restriction modification system, type I
YP_987796.1	PFAM: AAA-4 family protein; KEGG: neu:NE2525 possible ATP-dependent DNA helicase RecG-related protein
YP_987797.1	PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: neu:NE2524 possible type I restriction-modification system methylation subunit
YP_987798.1	PFAM: N-6 DNA methylase; KEGG: neu:NE2522 type I restriction-modification system methylation subunit
YP_987801.1	PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase
YP_987802.1	PFAM: phage integrase family protein
YP_987803.1	KEGG: xcv:XCV1295 putative phage replication protein
YP_987805.1	PFAM: phage integrase family protein; KEGG: pst:PSPTO_1100 site-specific recombinase, phage integrase family
YP_987806.1	TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein, HSR1-related; Protein of unknown function DUF933; KEGG: bam:Bamb_0429 GTP-binding protein YchF
YP_987807.1	PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: pol:Bpro_1126 MOSC-like beta barrel
YP_987808.1	TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: rfr:Rfer_1576 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family
YP_987809.1	KEGG: rfr:Rfer_1575 thiol:disulfide interchange protein DsbC
YP_987810.1	PFAM: peptidase M61 domain protein; KEGG: pol:Bpro_1123 peptidase M61
YP_987811.1	PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rfr:Rfer_1573 enoyl-CoA hydratase/isomerase
YP_987812.1	KEGG: rfr:Rfer_3366 hypothetical protein
YP_987813.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_987814.1	KEGG: pol:Bpro_1114 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase
YP_987815.1	PFAM: cytochrome c assembly protein; KEGG: rfr:Rfer_3343 cytochrome c assembly protein
YP_987816.1	KEGG: mfa:Mfla_0216 hypothetical protein
YP_987817.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_1111 periplasmic sensor signal transduction histidine kinase
YP_987818.1	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: pol:Bpro_1110 two component, sigma54 specific, transcriptional regulator, fis family
YP_987819.1	PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: pol:Bpro_1109 negative regulator of AmpC, AmpD
YP_987820.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_987821.1	Catalyzes the rate-limiting step in dNTP synthesis
YP_987822.1	KEGG: rfr:Rfer_3349 histone protein
YP_987823.1	PFAM: PfkB domain protein; KEGG: pol:Bpro_1103 PfkB
YP_987824.1	TIGRFAM: MJ0042 family finger-like protein; KEGG: rso:RSc2789 probable transmembrane protein
YP_987825.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_987826.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rfr:Rfer_3352 acetyl-CoA carboxylase, biotin carboxylase
YP_987827.1	TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: pol:Bpro_1099 acetyl-CoA carboxylase, biotin carboxyl carrier protein
YP_987828.1	PFAM: Redoxin domain protein; KEGG: rfr:Rfer_3354 putative thioredoxin-related transmembrane protein
YP_987829.1	KEGG: pol:Bpro_1097 hypothetical protein
YP_987830.1	TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: rfr:Rfer_3356 UDP-N-acetylmuramate
YP_987831.1	KEGG: pol:Bpro_1095 hypothetical protein
YP_987832.1	catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive
YP_987834.1	PFAM: peptidase U62, modulator of DNA gyrase; KEGG: rfr:Rfer_3369 peptidase U62, modulator of DNA gyrase
YP_987835.1	TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: pol:Bpro_1091 rod shape-determining protein RodA
YP_987836.1	PFAM: protein of unknown function UPF0227; KEGG: pol:Bpro_1090 protein of unknown function UPF0227
YP_987837.1	PFAM: O-antigen polymerase; KEGG: rfr:Rfer_4036 O-antigen polymerase
YP_987838.1	PFAM: cytochrome c, class I; KEGG: bbr:BB1839 putative cytochrome c
YP_987839.1	KEGG: eba:ebA6069 conserved hypothetical protein, putatively exported via twin-arginine system
YP_987840.1	PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: bbr:BB1837 putative ECF-family RNA polymerase sigma factor
YP_987841.1	PFAM: ribonuclease II; KEGG: rfr:Rfer_3411 ribonuclease II
YP_987842.1	TIGRFAM: TonB family protein; KEGG: pol:Bpro_1088 TonB-like
YP_987843.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_987844.1	TIGRFAM: monofunctional biosynthetic peptidoglycan transglycosylase; PFAM: glycosyl transferase, family 51; KEGG: rfr:Rfer_3419 monofunctional biosynthetic peptidoglycan transglycosylase
YP_987845.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_987846.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2354 methyl-accepting chemotaxis sensory transducer
YP_987847.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_2029 methyl-accepting chemotaxis sensory transducer
YP_987848.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_987849.1	KEGG: pol:Bpro_1082 hypothetical protein
YP_987850.1	zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis
YP_987851.1	PFAM: chemotaxis sensory transducer; Cache, type 2 domain protein; KEGG: rso:RSc1155 probable methyl-accepting chemotaxis transducer transmembrane protein
YP_987852.1	TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: pol:Bpro_1080 cell division protein FtsZ
YP_987853.1	PFAM: cell division protein FtsA; KEGG: pol:Bpro_1079 cell division protein FtsA
YP_987854.1	PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: rfr:Rfer_3422 cell division protein FtsQ
YP_987855.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_987856.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_987857.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_987858.1	TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: pol:Bpro_1074 cell cycle protein
YP_987859.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_987860.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_987861.1	TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pol:Bpro_1071 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase
YP_987862.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_987863.1	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: pol:Bpro_1069 peptidoglycan glycosyltransferase
YP_987864.1	PFAM: cell division protein FtsL; KEGG: pol:Bpro_1068 cell division protein, FtsL -like
YP_987865.1	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: rfr:Rfer_3433 methyltransferase
YP_987866.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_987867.1	heat shock protein involved in degradation of misfolded proteins
YP_987868.1	heat shock protein involved in degradation of misfolded proteins
YP_987869.1	KEGG: pol:Bpro_1065 hypothetical protein
YP_987870.1	TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: pol:Bpro_1064 transcriptional regulators, TraR/DksA family
YP_987871.1	PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rfr:Rfer_3439 cobalamin synthesis protein, P47K
YP_987872.1	KEGG: rfr:Rfer_3440 PUA
YP_987873.1	TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: rfr:Rfer_3442 phage integrase
YP_987874.1	PFAM: protein of unknown function DUF484; KEGG: rfr:Rfer_3443 hypothetical protein
YP_987875.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_987878.1	PFAM: NUDIX hydrolase; beta-lactamase domain protein; KEGG: pol:Bpro_1055 beta-lactamase-like
YP_987879.1	PFAM: RNA-binding S4 domain protein; KEGG: pol:Bpro_1128 RNA-binding S4
YP_987880.1	PFAM: YhhN family protein; KEGG: pfo:Pfl_5467 hypothetical protein
YP_987881.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_987882.1	KEGG: reu:Reut_A1751 hypothetical protein
YP_987883.1	KEGG: reu:Reut_A1752 putative heat-shock chaperone protein
YP_987884.1	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: sme:SMc00379 putative oxidoreductase protein
YP_987885.1	KEGG: eba:ebA1979 DnaK-related protein
YP_987886.1	KEGG: xac:XAC2992 endoproteinase Arg-C
YP_987887.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_987888.1	PFAM: PhoH family protein; KEGG: pol:Bpro_4095 PhoH-like protein
YP_987889.1	PFAM: protein of unknown function UPF0054; KEGG: rfr:Rfer_0737 protein of unknown function UPF0054
YP_987890.1	PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase
YP_987891.1	PFAM: protein of unknown function DUF81; KEGG: ade:Adeh_2178 protein of unknown function DUF81
YP_987892.1	PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: pol:Bpro_0650 DEAD/DEAH box helicase-like
YP_987893.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_987894.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: pol:Bpro_4099 cation diffusion facilitator family transporter
YP_987895.1	KEGG: dar:Daro_1052 PAS:GGDEF; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_987896.1	Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile
YP_987897.1	KEGG: par:Psyc_1092 hypothetical protein
YP_987898.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0633 ABC transporter related
YP_987899.1	TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: rfr:Rfer_3557 ABC-2 type transporter, NodJ family
YP_987900.1	PFAM: GAF domain protein; pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: pol:Bpro_0630 putative GAF sensor protein
YP_987902.1	KEGG: pol:Bpro_0629 hypothetical protein
YP_987903.1	PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: rfr:Rfer_0572 glucose-methanol-choline oxidoreductase
YP_987904.1	converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA
YP_987905.1	PFAM: HpcH/HpaI aldolase; KEGG: reu:Reut_C5927 2-dehydro-3-deoxyglucarate aldolase
YP_987906.1	PFAM: protein of unknown function DUF898, transmembrane; KEGG: rme:Rmet_2800 protein of unknown function DUF898, transmembrane
YP_987907.1	PFAM: peptidase M48, Ste24p; KEGG: rso:RSc0644 putative transmembrane protein
YP_987909.1	TIGRFAM: cysteine synthases; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: rfr:Rfer_3460 cysteine synthases
YP_987910.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: rfr:Rfer_3616 endonuclease/exonuclease/phosphatase
YP_987911.1	KEGG: pol:Bpro_0025 phospholipase D/transphosphatidylase
YP_987912.1	KEGG: rfr:Rfer_3618 hypothetical protein
YP_987913.1	PFAM: FAD dependent oxidoreductase; KEGG: pol:Bpro_1049 FAD dependent oxidoreductase
YP_987914.1	PFAM: protein of unknown function UPF0126; KEGG: rxy:Rxyl_2647 protein of unknown function UPF0126
YP_987915.1	PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; KEGG: bbr:BB0621 electron transfer flavoprotein alpha-subunit
YP_987916.1	PFAM: electron transfer flavoprotein beta-subunit; KEGG: bbr:BB0620 electron transfer flavoprotein beta-subunit
YP_987917.1	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: bur:Bcep18194_B1554 2-nitropropane dioxygenase, NPD
YP_987918.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3875 hypothetical protein
YP_987919.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reu:Reut_B3874 L-carnitine dehydratase/bile acid-inducible protein F
YP_987920.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_987921.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_2592 acyl-CoA dehydrogenase-like
YP_987922.1	PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bxe:Bxe_A1390 putative acyl-CoA dehydrogenase
YP_987923.1	KEGG: rfr:Rfer_2594 acetyl-CoA C-acyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase
YP_987924.1	PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: reu:Reut_B3873 enoyl-CoA hydratase/isomerase:3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA dehydrogenase, NAD-binding
YP_987925.1	PFAM: regulatory protein, MarR; regulatory protein, LysR; LysR, substrate-binding; KEGG: bur:Bcep18194_A6222 transcriptional regulator, LysR family
YP_987926.1	KEGG: dar:Daro_3332 hypothetical protein
YP_987927.1	putative metalloprotease
YP_987928.1	KEGG: pol:Bpro_1031 putative transmembrane protein
YP_987929.1	PFAM: protein of unknown function DUF88; KEGG: pol:Bpro_1025 protein of unknown function DUF88
YP_987930.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_987932.1	KEGG: pol:Bpro_4139 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase
YP_987933.1	PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_4140 extracellular ligand-binding receptor
YP_987934.1	PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_4140 extracellular ligand-binding receptor
YP_987936.1	PFAM: porin, Gram-negative type; KEGG: eba:ebA4244 outer membrane protein (porin)
YP_987937.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rme:Rmet_0462 major facilitator superfamily MFS_1
YP_987938.1	PFAM: DSBA oxidoreductase; KEGG: rfr:Rfer_3816 DsbA oxidoreductase
YP_987939.1	PFAM: protein of unknown function DUF1289; KEGG: rfr:Rfer_3823 YbaK/prolyl-tRNA synthetase associated protein
YP_987940.1	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: pol:Bpro_4154 YbaK/prolyl-tRNA synthetase associated region
YP_987941.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, extracellular region 2; Diverse 7TM receptor, transmembrane region; KEGG: pae:PA4929 hypothetical protein
YP_987942.1	PFAM: pyruvate carboxyltransferase; KEGG: rfr:Rfer_3824 pyruvate carboxyltransferase
YP_987943.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: pol:Bpro_4156 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_987944.1	PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: pol:Bpro_4157 carbamoyl-phosphate synthase L chain, ATP-binding
YP_987945.1	KEGG: pol:Bpro_4158 putative transmembrane protein
YP_987946.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_987947.1	PFAM: DinB family protein; KEGG: bmb:BruAb1_0712 hypothetical protein
YP_987948.1	PFAM: carboxyl transferase; KEGG: pol:Bpro_4160 propionyl-CoA carboxylase
YP_987949.1	activates fatty acids by binding to coenzyme A
YP_987950.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: rfr:Rfer_3834 transcriptional regulator, AraC family
YP_987951.1	PFAM: transposase, IS4 family protein; KEGG: rso:RSc1704 ISRSO18-transposase protein
YP_987952.1	PFAM: Glutathione S-transferase, N-terminal domain; KEGG: eba:ebA4663 glutathione S-transferase family protein
YP_987953.1	KEGG: dar:Daro_4102 hypothetical protein
YP_987954.1	PFAM: AMP-dependent synthetase and ligase; KEGG: sil:SPOA0130 AMP-binding enzyme family protein
YP_987955.1	KEGG: pol:Bpro_0271 hypothetical protein
YP_987956.1	KEGG: pol:Bpro_4182 hypothetical protein
YP_987957.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_3937 methyl-accepting chemotaxis sensory transducer
YP_987958.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bxe:Bxe_B1631 HAD-superfamily hydrolase, subfamily IA, variant3
YP_987959.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rfr:Rfer_3838 acyl-CoA dehydrogenase-like
YP_987960.1	PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_4186 short-chain dehydrogenase/reductase SDR
YP_987961.1	KEGG: pol:Bpro_4187 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase
YP_987962.1	catalyzes the phosphorylation/dephosphorylation of the enzyme isocitrate dehydrogenase on a specific serine which regulates activity; unphosphorylated IDH is fully active when cells are grown on glucose while the enzyme becomes phosphorylated and inactive in the presence of acetate or ethanol
YP_987963.1	PFAM: carbonic anhydrase; KEGG: rfr:Rfer_3841 carbonate dehydratase
YP_987964.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: pol:Bpro_4190 acyl-CoA dehydrogenase-like
YP_987965.1	PFAM: regulatory protein, MerR; KEGG: rfr:Rfer_3843 transcriptional regulator, MerR family
YP_987966.1	PFAM: transposase, mutator type; KEGG: xcv:XCVc0009 transposase, mutator family
YP_987967.1	PFAM: Integrase, catalytic region; KEGG: dvu:DVU2010 ISD1, transposase OrfB
YP_987968.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_4229 ABC transporter related
YP_987969.1	PFAM: CheB methylesterase; response regulator receiver; KEGG: rfr:Rfer_0571 response regulator receiver modulated CheB methylesterase
YP_987970.1	catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors
YP_987971.1	PFAM: MCP methyltransferase, CheR-type; Methyltransferase type 11; KEGG: rfr:Rfer_0569 MCP methyltransferase, CheR-type
YP_987972.1	PFAM: CheW domain protein; KEGG: rfr:Rfer_0568 CheW protein
YP_987973.1	PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rfr:Rfer_0567 CheA signal transduction histidine kinases
YP_987974.1	PFAM: response regulator receiver; KEGG: rfr:Rfer_0566 response regulator receiver domain protein
YP_987975.1	KEGG: rfr:Rfer_0565 hypothetical protein
YP_987976.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rfr:Rfer_0564 putative signal transduction histidine kinase
YP_987977.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: rfr:Rfer_0563 two component transcriptional regulator, LuxR family
YP_987978.1	TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: rfr:Rfer_0562 flagellar biosynthetic protein FliR
YP_987979.1	TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: rfr:Rfer_0561 flagellar biosynthetic protein FliQ
YP_987980.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_987981.1	PFAM: flagellar biosynthesis protein, FliO; KEGG: rfr:Rfer_0559 hypothetical protein
YP_987982.1	TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: rfr:Rfer_0558 flagellar motor switch FliN
YP_987983.1	PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: rfr:Rfer_0557 flagellar motor switch protein FliM
YP_987984.1	PFAM: flagellar basal body-associated protein FliL; KEGG: rfr:Rfer_0556 flagellar basal body-associated protein FliL
YP_987985.1	PFAM: flagellar hook-length control protein; KEGG: rfr:Rfer_0555 flagellar hook-length control protein
YP_987986.1	TIGRFAM: flagellar export protein FliJ; KEGG: rfr:Rfer_0554 flagellar export FliJ
YP_987987.1	KEGG: rfr:Rfer_0553 ATPase FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase
YP_987988.1	PFAM: flagellar assembly protein FliH; KEGG: rfr:Rfer_0552 flagellar assembly protein FliH
YP_987989.1	PFAM: flagellar motor switch protein FliG; KEGG: rfr:Rfer_0551 flagellar motor switch protein FliG
YP_987990.1	TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; KEGG: rfr:Rfer_0550 flagellar M-ring protein FliF
YP_987991.1	TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: rfr:Rfer_0549 flagellar hook-basal body complex protein
YP_987992.1	KEGG: rfr:Rfer_0634 flagellar protein FliT
YP_987993.1	PFAM: flagellar protein FliS; KEGG: rfr:Rfer_0633 flagellar protein FliS
YP_987994.1	PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: rfr:Rfer_0632 flagellar hook-associated 2-like
YP_987995.1	PFAM: flagellin domain protein; KEGG: mfa:Mfla_1986 flagellin-like protein
YP_987996.1	PFAM: flagellin domain protein; KEGG: mfa:Mfla_1986 flagellin-like protein
YP_987997.1	PFAM: flagellin domain protein; KEGG: mfa:Mfla_1986 flagellin-like protein
YP_987998.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: rfr:Rfer_3702 MotA/TolQ/ExbB proton channel
YP_987999.1	PFAM: OmpA/MotB domain protein; KEGG: rfr:Rfer_3703 OmpA/MotB
YP_988000.1	PFAM: response regulator receiver; KEGG: rfr:Rfer_3704 response regulator receiver domain protein
YP_988001.1	PFAM: Chemotaxis phosphatase, CheZ; KEGG: rfr:Rfer_3705 chemotaxis phosphatase, CheZ
YP_988002.1	PFAM: type III secretion exporter; KEGG: rfr:Rfer_3706 type III secretion exporter
YP_988003.1	TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: rfr:Rfer_3707 flagellar biosynthesis protein FlhA
YP_988004.1	PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; KEGG: rfr:Rfer_3708 GTP-binding signal recognition particle SRP54, G-domain
YP_988005.1	KEGG: rfr:Rfer_3709 hypothetical protein
YP_988006.1	TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_3710 sigma 28 (flagella/sporulation)
YP_988008.1	PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: rfr:Rfer_3712 anti-sigma-28 factor, FlgM
YP_988009.1	PFAM: SAF domain; KEGG: rfr:Rfer_3713 flageller protein FlgA
YP_988010.1	TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: rfr:Rfer_3714 flagellar basal-body rod protein FlgB
YP_988011.1	TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rfr:Rfer_3715 flagellar basal-body rod protein FlgC
YP_988012.1	PFAM: flagellar hook capping protein; KEGG: rfr:Rfer_3716 flagellar hook capping protein
YP_988013.1	PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: dar:Daro_0752 flagellar basal body rod protein:protein of unknown function DUF1078:flagellar basal body FlaE
YP_988014.1	TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; KEGG: rfr:Rfer_3718 flagellar basal-body rod FlgF
YP_988015.1	TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rfr:Rfer_3719 flagellar basal-body rod FlgG
YP_988016.1	PFAM: flagellar L-ring protein; KEGG: rfr:Rfer_3720 flagellar L-ring protein
YP_988017.1	KEGG: bba:Bd2659 hypothetical protein
YP_988018.1	part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum
YP_988019.1	KEGG: rfr:Rfer_3722 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2
YP_988020.1	TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rfr:Rfer_3723 flagellar hook-associated protein
YP_988021.1	TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: rfr:Rfer_3724 flagellin-like
YP_988022.1	PFAM: HDOD; KEGG: mfa:Mfla_1965 diguanylate phosphodiesterase (EAL domain)
YP_988023.1	PFAM: sodium:neurotransmitter symporter; KEGG: rfr:Rfer_2107 sodium:neurotransmitter symporter
YP_988024.1	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: bam:Bamb_4936 2-nitropropane dioxygenase, NPD
YP_988025.1	PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: pol:Bpro_4233 transcriptional regulator, GntR family
YP_988026.1	KEGG: pol:Bpro_4234 hypothetical protein
YP_988027.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_4235 protein of unknown function DUF6, transmembrane
YP_988028.1	PFAM: aminotransferase, class I and II; KEGG: pol:Bpro_4240 aminotransferase, class I and II
YP_988029.1	TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: pfl:PFL_2288 phenazine biosynthesis protein, PhzF family
YP_988030.1	PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; KEGG: pol:Bpro_4245 pyridoxal-5'-phosphate-dependent enzyme, beta subunit
YP_988031.1	KEGG: reu:Reut_B3888 hypothetical protein
YP_988032.1	KEGG: reu:Reut_B3887 possible UreA/short-chain amide ABC transporter
YP_988033.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_C0869 hypothetical protein
YP_988034.1	PFAM: Phosphoglycerate mutase; KEGG: rfr:Rfer_3732 phosphoglycerate mutase
YP_988035.1	PFAM: Creatininase; KEGG: rfr:Rfer_3746 creatininase
YP_988036.1	PFAM: Threonyl/alanyl tRNA synthetase, SAD; KEGG: bam:Bamb_2316 threonyl/alanyl tRNA synthetase, SAD
YP_988037.1	PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: rfr:Rfer_0748 cytochrome c biogenesis protein, transmembrane protein
YP_988038.1	PFAM: protein of unknown function DUF323; KEGG: rba:RB8026 hypothetical protein
YP_988039.1	PFAM: Na+/H+ antiporter NhaA; KEGG: nwi:Nwi_2853 Na+/H+ antiporter NhaA
YP_988040.1	PFAM: CoA-binding domain protein; KEGG: rfr:Rfer_0747 CoA-binding
YP_988041.1	KEGG: sus:Acid_5487 O-acetylhomoserine/O-acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase
YP_988042.1	PFAM: Integral membrane protein TerC; KEGG: xcb:XC_4321 export protein
YP_988043.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: eba:ebA2202 transcriptional regulator, LysR family
YP_988044.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_988045.1	KEGG: rfr:Rfer_0822 primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like
YP_988046.1	KEGG: pol:Bpro_4206 L-asparaginases, type II; TIGRFAM: L-asparaginases, type II; PFAM: Asparaginase/glutaminase
YP_988047.1	PFAM: Auxin Efflux Carrier; KEGG: pol:Bpro_4280 auxin efflux carrier
YP_988048.1	PFAM: UvrD/REP helicase; KEGG: pol:Bpro_4281 UvrD/REP helicase
YP_988049.1	KEGG: pol:Bpro_4283 hypothetical protein
YP_988050.1	PFAM: phospholipase A1; KEGG: rfr:Rfer_0525 phospholipase
YP_988051.1	KEGG: rfr:Rfer_0375 hypothetical protein
YP_988052.1	PFAM: UspA domain protein; KEGG: rfr:Rfer_1666 UspA
YP_988053.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_988054.1	PFAM: protein of unknown function DUF72; KEGG: xac:XAC0605 hypothetical protein
YP_988055.1	KEGG: pol:Bpro_0461 hypothetical protein
YP_988056.1	KEGG: pol:Bpro_0460 hypothetical protein
YP_988057.1	KEGG: pol:Bpro_0459 hypothetical protein
YP_988058.1	KEGG: pol:Bpro_0458 hypothetical protein
YP_988059.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: bpm:BURPS1710b_A0345 Lrp regulator
YP_988060.1	catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate
YP_988061.1	PFAM: phospholipid/glycerol acyltransferase; major facilitator superfamily MFS_1; KEGG: pol:Bpro_0457 phospholipid/glycerol acyltransferase
YP_988062.1	SMART: helix-turn-helix domain protein; KEGG: pol:Bpro_0454 transcriptional regulator, XRE family
YP_988063.1	PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: ade:Adeh_1418 zinc-binding alcohol dehydrogenase
YP_988064.1	KEGG: pol:Bpro_3367 hypothetical protein
YP_988065.1	KEGG: bam:Bamb_3919 hypothetical protein
YP_988066.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_A0548 hypothetical protein
YP_988067.1	PFAM: FAD dependent oxidoreductase; KEGG: reu:Reut_A1449 putative transmembrane oxidoreductase protein
YP_988068.1	TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: rso:RSc1888 hypothetical protein
YP_988069.1	PFAM: FAD dependent oxidoreductase; KEGG: dar:Daro_3842 FAD dependent oxidoreductase
YP_988070.1	PFAM: domain of unknown function DUF1745; KEGG: rfr:Rfer_0622 hypothetical protein
YP_988071.1	KEGG: pol:Bpro_0449 hypothetical protein
YP_988072.1	PFAM: histone family protein DNA-binding protein; KEGG: bte:BTH_II0701 DNA-binding protein BpH2
YP_988073.1	KEGG: bja:bll4165 hypothetical protein
YP_988074.1	PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: rfr:Rfer_3587 response regulator receiver domain protein
YP_988075.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; SMART: PAS domain containing protein; KEGG: pol:Bpro_4434 multi-sensor signal transduction histidine kinase
YP_988076.1	KEGG: rfr:Rfer_3589 putative proline rich signal peptide protein
YP_988077.1	TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; KEGG: rfr:Rfer_3590 sun protein
YP_988078.1	KEGG: pol:Bpro_4440 LemA
YP_988079.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_988080.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_988081.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_988082.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_988083.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_988084.1	binds directly to 23S ribosomal RNA
YP_988085.1	KEGG: rfr:Rfer_3597 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein
YP_988086.1	forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_988087.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_988088.1	PFAM: transposase IS3/IS911 family protein; KEGG: pol:Bpro_5203 transposase IS3/IS911
YP_988089.1	catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione
YP_988090.1	TIGRFAM: benzoate transporter; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: xcb:XC_4240 benzoate transporter
YP_988091.1	PFAM: K+ potassium transporter; KEGG: pol:Bpro_4582 K+ potassium transporter
YP_988092.1	TIGRFAM: glutamate--cysteine ligase; KEGG: pol:Bpro_4583 glutamate--cysteine ligase GshA
YP_988093.1	PFAM: cation transporter; KEGG: bbr:BB0267 Trk system potassium uptake protein
YP_988094.1	involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain
YP_988095.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_988096.1	KEGG: pol:Bpro_3478 hypothetical protein
YP_988097.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_988098.1	PFAM: Rare lipoprotein B; KEGG: pol:Bpro_4604 rare lipoprotein B
YP_988099.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_988100.1	PFAM: transposase, IS4 family protein; KEGG: mca:MCA2964 ISMca1, transposase
YP_988101.1	PFAM: MscS Mechanosensitive ion channel; KEGG: pfl:PFL_1548 mechanosensitive ion channel family protein
YP_988102.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: pol:Bpro_4606 biopolymer transport protein ExbD/TolR
YP_988103.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: pol:Bpro_4607 MotA/TolQ/ExbB proton channel
YP_988104.1	PFAM: dihydrodipicolinate reductase; KEGG: pol:Bpro_4608 dihydrodipicolinate reductase
YP_988105.1	PFAM: SmpA/OmlA domain protein; KEGG: pol:Bpro_4609 SmpA/OmlA
YP_988106.1	PFAM: ferric-uptake regulator; KEGG: pol:Bpro_4610 ferric uptake regulator, FUR family
YP_988107.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_988108.1	PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: pol:Bpro_4612 PTS IIA-like nitrogen-regulatory protein PtsN
YP_988109.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: rfr:Rfer_0750 sigma 54 modulation protein/ribosomal protein S30EA
YP_988110.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_988111.1	TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_2549 TonB-dependent siderophore receptor
YP_988112.1	PFAM: protein of unknown function DUF306, Meta and HslJ; KEGG: ppr:PBPRA2462 hypothetical protein
YP_988113.1	TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: pol:Bpro_4628 thioredoxin
YP_988114.1	TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: bms:BR1197 ThiJ/PfpI family protein
YP_988115.1	KEGG: rso:RSc0415 hypothetical protein
YP_988116.1	KEGG: pol:Bpro_4627 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
YP_988117.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_988118.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; KEGG: pol:Bpro_4625 SUA5/YciO/YrdC/YwlC
YP_988119.1	KEGG: bpm:BURPS1710b_1005 lipase
YP_988120.1	KEGG: rfr:Rfer_0193 hypothetical protein
YP_988121.1	TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; KEGG: rfr:Rfer_0191 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
YP_988122.1	PFAM: peptidase M22, glycoprotease; KEGG: rfr:Rfer_0189 peptidase M22, glycoprotease
YP_988123.1	TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: rfr:Rfer_0188 ribosomal-protein-alanine acetyltransferase
YP_988124.1	KEGG: pol:Bpro_4619 phage SPO1 DNA polymerase-related protein
YP_988125.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_2851 4Fe-4S ferredoxin, iron-sulfur binding
YP_988126.1	PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: rfr:Rfer_2850 aldehyde ferredoxin oxidoreductase
YP_988127.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_2849 FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_988128.1	PFAM: thiamineS protein; KEGG: rfr:Rfer_2848 thiamineS
YP_988129.1	KEGG: rfr:Rfer_2847 hypothetical protein
YP_988130.1	TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2+ transporter protein, CorA family protein; KEGG: pol:Bpro_4615 magnesium and cobalt transport protein CorA
YP_988131.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_988132.1	PFAM: AMP-dependent synthetase and ligase; KEGG: pol:Bpro_4543 AMP-dependent synthetase and ligase
YP_988133.1	PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: pol:Bpro_4544 NAD(P) transhydrogenase, beta subunit
YP_988134.1	KEGG: pol:Bpro_4545 NAD(P) transhydrogenase, subunit alpha part 2
YP_988136.1	PFAM: alanine dehydrogenase/PNT domain protein; KEGG: pol:Bpro_4546 NAD(P)(+) transhydrogenase (AB-specific)
YP_988137.1	KEGG: rso:RSc0573 probable fructose-bisphosphate aldolase protein; TIGRFAM: ketose-bisphosphate aldolases; fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: ketose-bisphosphate aldolase, class-II
YP_988138.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_988139.1	PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: rfr:Rfer_0086 peptidase M24
YP_988140.1	PFAM: Nucleotidyl transferase; KEGG: rfr:Rfer_0085 nucleotidyl transferase
YP_988141.1	TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: pol:Bpro_4827 transketolase
YP_988142.1	KEGG: pol:Bpro_4826 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase
YP_988143.1	PFAM: protein of unknown function DUF924; KEGG: ilo:IL1577 hypothetical protein
YP_988144.1	KEGG: rfr:Rfer_2154 ribosomal subunit interface protein, putative
YP_988145.1	PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: pol:Bpro_4701 peptidase C26
YP_988146.1	KEGG: pol:Bpro_4719 peptidylprolyl isomerase, FKBP-type
YP_988147.1	PFAM: Pirin domain protein domain protein; Pirin domain protein; KEGG: pol:Bpro_4775 pirin-like
YP_988148.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: pol:Bpro_4772 3-demethylubiquinone-9 3-methyltransferase
YP_988150.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: ret:RHE_CH02674 probable oxidoreductase protein
YP_988151.1	KEGG: rfr:Rfer_4031 hypothetical protein
YP_988152.1	PFAM: DTW domain containing protein; KEGG: pol:Bpro_4750 hypothetical protein
YP_988153.1	PFAM: regulatory proteins, IclR; KEGG: reu:Reut_B3889 regulatory protein, IclR
YP_988154.1	KEGG: reu:Reut_B3886 thiolase
YP_988155.1	PFAM: protein of unknown function DUF35; KEGG: reu:Reut_B3885 protein of unknown function DUF35
YP_988156.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B3884 hypothetical protein
YP_988157.1	PFAM: CoA-binding domain protein; KEGG: reu:Reut_B3883 CoA-binding
YP_988158.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: pol:Bpro_1375 glutathione S-transferase-like
YP_988159.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_988160.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfr:Sfri_0888 glyoxalase/bleomycin resistance protein/dioxygenase
YP_988162.1	KEGG: pen:PSEEN0757 hypothetical protein
YP_988164.1	PFAM: protein of unknown function DUF1010
YP_988165.1	KEGG: rso:RSc3250 probable signal peptide protein
YP_988166.1	KEGG: rpa:RPA2254 hypothetical protein
YP_988167.1	PFAM: protein of unknown function DUF88; KEGG: cvi:CV0746 hypothetical protein
YP_988168.1	KEGG: rfr:Rfer_4005 hypothetical protein
YP_988170.1	decatenates replicating daughter chromosomes
YP_988171.1	PFAM: nuclear protein SET; KEGG: rfr:Rfer_3954 nuclear protein SET
YP_988172.1	TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; KEGG: pol:Bpro_4716 biotin--acetyl-CoA-carboxylase ligase
YP_988173.1	PFAM: Sporulation domain protein; KEGG: rfr:Rfer_3952 hypothetical protein
YP_988174.1	PFAM: Uncharacterized protein UPF0065; KEGG: bbr:BB1948 hypothetical protein
YP_988175.1	PFAM: N-formylglutamate amidohydrolase; KEGG: pol:Bpro_2708 N-formylglutamate amidohydrolase
YP_988176.1	PFAM: Uncharacterized protein UPF0065; KEGG: rme:Rmet_0521 uncharacterized protein UPF0065
YP_988177.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_0983 transcriptional regulator, LysR family
YP_988178.1	PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Two-component sensor kinase N-terminal domain protein; KEGG: rfr:Rfer_3951 periplasmic sensor signal transduction histidine kinase
YP_988179.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: pol:Bpro_4687 two component transcriptional regulator, winged helix family
YP_988180.1	PFAM: regulatory protein, MarR; KEGG: pol:Bpro_4686 transcriptional regulator, MarR family
YP_988181.1	KEGG: rfr:Rfer_3948 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase
YP_988182.1	KEGG: pol:Bpro_4684 regulatory protein RecX
YP_988183.1	KEGG: rfr:Rfer_3864 hypothetical protein
YP_988184.1	forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_988185.1	part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane
YP_988186.1	TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: pol:Bpro_4646 preprotein translocase, YajC subunit
YP_988187.1	PFAM: MscS Mechanosensitive ion channel; KEGG: ppu:PP_3360 hypothetical protein
YP_988188.1	Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates
YP_988189.1	PFAM: regulatory protein, AsnC/Lrp family; KEGG: pol:Bpro_4648 transcriptional regulator, AsnC family
YP_988190.1	KEGG: bja:blr4317 hypothetical protein
YP_988191.1	KEGG: hch:HCH_04199 hypothetical protein
YP_988192.1	PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: pol:Bpro_0736 protein of unknown function DUF894, DitE
YP_988193.1	PFAM: MltA domain protein; 3D domain protein; KEGG: rfr:Rfer_0365 MltA
YP_988194.1	PFAM: OmpA/MotB domain protein; KEGG: rfr:Rfer_0206 OmpA/MotB
YP_988195.1	PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: pol:Bpro_4652 two component transcriptional regulator, LuxR family
YP_988196.1	KEGG: pol:Bpro_4653 signal transduction histidine kinase, nitrogen specific, NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_988197.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: rfr:Rfer_0849 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_988198.1	KEGG: rfr:Rfer_0366 hypothetical protein
YP_988199.1	PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: rfr:Rfer_0367 glutamate-ammonia-ligase adenylyltransferase
YP_988200.1	PFAM: regulatory protein, TetR; KEGG: mca:MCA1807 transcriptional regulator, TetR family
YP_988201.1	TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rfr:Rfer_4106 RND efflux system, outer membrane lipoprotein, NodT
YP_988202.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rfr:Rfer_4105 secretion protein HlyD
YP_988203.1	PFAM: acriflavin resistance protein; KEGG: dar:Daro_0459 acriflavin resistance protein
YP_988204.1	PFAM: glutathione peroxidase; KEGG: pol:Bpro_4659 glutathione peroxidase
YP_988205.1	PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rfr:Rfer_4050 glutathione S-transferase-like
YP_988206.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_988207.1	PFAM: YaeQ family protein; KEGG: rfr:Rfer_4048 YaeQ
YP_988208.1	KEGG: pol:Bpro_4663 hypothetical protein
YP_988209.1	PFAM: protein of unknown function DUF1289; KEGG: pol:Bpro_4664 protein of unknown function DUF1289
YP_988210.1	PFAM: Integral membrane protein TerC; KEGG: rfr:Rfer_3943 integral membrane protein TerC
YP_988211.1	KEGG: pol:Bpro_4667 hypothetical protein
YP_988212.1	PFAM: membrane protein of unknown function; KEGG: rfr:Rfer_4042 membrane protein of unknown function
YP_988213.1	PFAM: peptidase M48, Ste24p; KEGG: rfr:Rfer_4041 peptidase M48, Ste24p
YP_988214.1	TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: pol:Bpro_4671 molybdenum cofactor biosynthesis protein C
YP_988215.1	PFAM: DNA polymerase, beta domain protein region; KEGG: swo:Swol_0221 hypothetical protein
YP_988216.1	TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; KEGG: xom:XOO_3261 nucleotidyltransferase
YP_988217.1	KEGG: rfr:Rfer_4041 peptidase M48, Ste24p
YP_988218.1	TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: rfr:Rfer_4040 molybdenum cofactor biosynthesis protein C
YP_988219.1	KEGG: pol:Bpro_4670 FimB
YP_988220.1	PFAM: Fimbrial protein pilin; KEGG: rfr:Rfer_1265 methylation
YP_988221.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase
YP_988222.1	PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; KEGG: eba:ebA3455 transposase
YP_988223.1	PFAM: Forkhead-associated protein; KEGG: pol:Bpro_4677 FHA domain containing protein
YP_988224.1	PFAM: protein phosphatase 2C domain protein; Stage II sporulation E family protein; KEGG: rfr:Rfer_3941 protein serine/threonine phosphatases
YP_988225.1	PFAM: Integral membrane protein TerC; KEGG: bbr:BB2083 integral membrane protein
YP_988226.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_988227.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_988228.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis
YP_988229.1	TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: rfr:Rfer_3862 DNA processing protein DprA, putative
YP_988230.1	PFAM: Peptidoglycan-binding LysM; KEGG: rfr:Rfer_3861 peptidoglycan-binding LysM
YP_988231.1	KEGG: pol:Bpro_4639 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase
YP_988232.1	KEGG: pol:Bpro_0388 putative lipoprotein transmembrane
YP_988233.1	TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: pol:Bpro_4638 methionyl-tRNA formyltransferase
YP_988234.1	PFAM: AzlC family protein; KEGG: pol:Bpro_4637 AzlC-like
YP_988235.1	PFAM: branched-chain amino acid transport; KEGG: pol:Bpro_4636 branched-chain amino acid transport
YP_988236.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_988237.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: pol:Bpro_4618 protein of unknown function DUF6, transmembrane
YP_988238.1	type 2 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_988239.1	KEGG: bbr:BB4564 putative LysR-family transcriptional regulator
YP_988240.1	PFAM: Uncharacterized protein UPF0065; KEGG: bpa:BPP4092 hypothetical protein
YP_988241.1	KEGG: bbr:BB4562 hypothetical protein
YP_988242.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rfr:Rfer_1480 methyl-accepting chemotaxis sensory transducer
YP_988243.1	TIGRFAM: SSS sodium solute transporter superfamily; sodium/proline symporter; PFAM: Na+/solute symporter; KEGG: pae:PA0783 sodium/proline symporter PutP
YP_988244.1	TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; KEGG: pol:Bpro_4568 excinuclease ABC, A subunit
YP_988245.1	PFAM: major facilitator superfamily MFS_1; KEGG: pol:Bpro_4567 major facilitator superfamily MFS_1
YP_988246.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pol:Bpro_4565 single-strand binding protein
YP_988247.1	TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: dar:Daro_1762 L-lactate permease
YP_988248.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_988249.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rme:Rmet_4206 transcriptional regulator, LysR family
YP_988250.1	catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica
YP_988251.1	TIGRFAM: CitB domain protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_3489 citrate utilization protein B
YP_988252.1	PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase
YP_988253.1	PFAM: Uncharacterized protein UPF0065; KEGG: reu:Reut_B5589 hypothetical protein
YP_988254.1	PFAM: NUDIX hydrolase; KEGG: pol:Bpro_4549 NUDIX hydrolase
YP_988255.1	TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bpm:BURPS1710b_A0821 TonB-dependent copper receptor
YP_988256.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bbr:BB4270 putative acetyltransferase
YP_988257.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_988258.1	KEGG: mca:MCA0551 hypothetical protein
YP_988259.1	KEGG: mhu:Mhun_1889 hypothetical protein
YP_988260.1	KEGG: gvi:glr1927 unknown protein
YP_988261.1	PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cte:CT1729 DNA methylase, putative
YP_988262.1	PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: eba:ebA7143 two-component sensor histidine kinase
YP_988263.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: eba:ebA7146 two component response regulator
YP_988264.1	KEGG: mag:amb0190 predicted membrane protein
YP_988265.1	PFAM: Oxidoreductase FAD-binding domain protein; FAD-binding 8 domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: eba:ebA7152 putative flavocytochrome subuit of an oxidoreductase
YP_988266.1	KEGG: reu:Reut_B5167 hypothetical protein
YP_988267.1	KEGG: bmb:BruAb2_0227 hypothetical protein
YP_988268.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; Oxidoreductase FAD-binding domain protein; KEGG: bms:BRA0233 oxidoreductase, FAD-binding, putative
YP_988269.1	PFAM: ApbE family lipoprotein; KEGG: bmb:BruAb2_0229 ApbE family protein
YP_988272.1	KEGG: dar:Daro_3715 twin-arginine translocation pathway signal
YP_988273.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_988274.1	PFAM: type III restriction enzyme, res subunit; KEGG: gme:Gmet_0675 type III restriction enzyme, res subunit
YP_988275.1	PFAM: DNA methylase N-4/N-6 domain protein; KEGG: pen:PSEEN0753 adenine specific DNA methylase
YP_988276.1	PFAM: protein of unknown function DUF350; KEGG: aba:Acid345_0110 protein of unknown function DUF350
YP_988277.1	KEGG: rme:Rmet_3458 putative transmembrane protein
YP_988278.1	KEGG: dar:Daro_3752 putative transmembrane protein
YP_988279.1	KEGG: pol:Bpro_4856 hypothetical protein
YP_988280.1	PFAM: flagellar basal body rod protein; KEGG: xom:XOO_2971 hypothetical protein
YP_988281.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: pol:Bpro_4285 transcriptional regulator, LysR family
YP_988282.1	catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate
YP_988283.1	TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: rfr:Rfer_0372 methylmalonate-semialdehyde dehydrogenase
YP_988284.1	NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate
YP_988285.1	PFAM: guanine-specific ribonuclease N1 and T1; KEGG: rfr:Rfer_0094 guanine-specific ribonuclease N1 and T1
YP_988286.1	KEGG: pol:Bpro_4860 hypothetical protein
YP_988287.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_988288.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: pol:Bpro_4862 PpiC-type peptidyl-prolyl cis-trans isomerase
YP_988289.1	PFAM: Organic solvent tolerance protein; KEGG: rfr:Rfer_0098 organic solvent tolerance protein
YP_988290.1	PFAM: aminoglycoside phosphotransferase; KEGG: rfr:Rfer_0099 aminoglycoside phosphotransferase
YP_988291.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_988293.1	KEGG: cvi:CV0860 hypothetical protein
YP_988294.1	PFAM: SMC domain protein; KEGG: bpm:BURPS1710b_2543 hypothetical protein
YP_988295.1	KEGG: bpm:BURPS1710b_2542 hypothetical protein
YP_988296.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: abo:ABO_1262 GGDEF domain protein
YP_988297.1	PFAM: alpha/beta hydrolase fold; KEGG: rfr:Rfer_0402 alpha/beta hydrolase
YP_988298.1	PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rfr:Rfer_0403 peptidase M20
YP_988299.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bpe:BP1441 probable membrane protein
YP_988300.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: rso:RSc3136 putative methyl-accepting chemotaxis transmembrane protein
YP_988301.1	TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_4888 methionine biosynthesis MetW
YP_988302.1	Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine
YP_988303.1	PFAM: protein of unknown function UPF0016; KEGG: rfr:Rfer_0520 protein of unknown function UPF0016
YP_988304.1	PFAM: RNP-1 like RNA-binding protein; KEGG: rfr:Rfer_4234 RNA-binding region RNP-1
YP_988305.1	PFAM: RNP-1 like RNA-binding protein; KEGG: pol:Bpro_4894 RNA-binding region RNP-1 (RNA recognition motif)
YP_988306.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: pol:Bpro_4895 short-chain dehydrogenase/reductase SDR
YP_988307.1	PFAM: protein of unknown function DUF1239; KEGG: pol:Bpro_4896 protein of unknown function DUF1239
YP_988308.1	TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: pol:Bpro_4897 phosphatase KdsC
YP_988309.1	KEGG: rfr:Rfer_4237 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS)
YP_988310.1	TIGRFAM: potassium efflux system protein; PFAM: TrkA-N domain protein; TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: pol:Bpro_4900 potassium efflux system protein
YP_988311.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_988312.1	PFAM: Integrase, catalytic region; KEGG: bxe:Bxe_A3516 putative transposase
YP_988313.1	KEGG: rfr:Rfer_4240 hypothetical protein
YP_988314.1	PFAM: cyclic nucleotide-binding; KEGG: pol:Bpro_4903 cyclic nucleotide-binding domain (cNMP-BD) protein
YP_988315.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_988316.1	PFAM: extracellular solute-binding protein, family 5; KEGG: bpe:BP3237 putative binding-protein-dependent transport protein (periplasmic)
YP_988317.1	PFAM: 60 kDa inner membrane insertion protein; KEGG: pol:Bpro_4905 60 kDa inner membrane insertion protein
YP_988318.1	PFAM: protein of unknown function DUF37; KEGG: rfr:Rfer_4243 protein of unknown function DUF37
YP_988319.1	KEGG: rfr:Rfer_4244 hypothetical protein
YP_988320.1	in Escherichia coli transcription of this gene is enhanced by polyamines
YP_988321.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_988322.1	KEGG: pol:Bpro_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain
YP_988323.1	KEGG: pol:Bpro_0003 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II
YP_988324.1	KEGG: atc:AGR_C_3308 hypothetical protein
YP_988325.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bam:Bamb_2453 GCN5-related N-acetyltransferase
YP_988326.1	PFAM: protein of unknown function UPF0153; KEGG: cvi:CV0280 hypothetical protein
YP_988327.1	PFAM: OsmC family protein; KEGG: rru:Rru_A0580 OsmC-like protein
YP_988328.1	PFAM: protein of unknown function DUF72; KEGG: pol:Bpro_4869 protein of unknown function DUF72
YP_988329.1	PFAM: acylphosphatase; KEGG: tbd:Tbd_0859 putative acylphosphatase
YP_988330.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_4119 4Fe-4S ferredoxin, iron-sulfur binding
YP_988331.1	PFAM: gamma-glutamyltranspeptidase; KEGG: bbr:BB1598 putative glutamyltransferase
YP_988332.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_988333.1	KEGG: pol:Bpro_0143 hypothetical protein
YP_988334.1	KEGG: pol:Bpro_3166 hypothetical protein
YP_988335.1	helicase involved in DNA repair and perhaps also replication
YP_988336.1	KEGG: rfr:Rfer_0182 hypothetical protein
YP_988337.1	KEGG: pol:Bpro_0009 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease
YP_988338.1	PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: mxa:MXAN_0453 putative general stress protein 26
YP_988339.1	PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: sco:SCO1360 GntR-family transcriptional regulator