-- dump date 20240506_001342 -- class Genbank::Contig -- table contig_comment -- id comment NC_011992.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001392.1.REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. CoatesREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps withREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. EachREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total errorREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376)REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information:REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSYREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.htmlREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: CompleteREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizerREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh waterREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: FacultativeREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living.REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620 CDSs (total) :: 3,555REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620 CDSs (total) :: 3,555 Genes (coding) :: 3,504REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620 CDSs (total) :: 3,555 Genes (coding) :: 3,504 CDSs (with protein) :: 3,504REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620 CDSs (total) :: 3,555 Genes (coding) :: 3,504 CDSs (with protein) :: 3,504 Genes (RNA) :: 65REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620 CDSs (total) :: 3,555 Genes (coding) :: 3,504 CDSs (with protein) :: 3,504 Genes (RNA) :: 65 rRNAs :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620 CDSs (total) :: 3,555 Genes (coding) :: 3,504 CDSs (with protein) :: 3,504 Genes (RNA) :: 65 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620 CDSs (total) :: 3,555 Genes (coding) :: 3,504 CDSs (with protein) :: 3,504 Genes (RNA) :: 65 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620 CDSs (total) :: 3,555 Genes (coding) :: 3,504 CDSs (with protein) :: 3,504 Genes (RNA) :: 65 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620 CDSs (total) :: 3,555 Genes (coding) :: 3,504 CDSs (with protein) :: 3,504 Genes (RNA) :: 65 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 3 Pseudo Genes (total) :: 51REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620 CDSs (total) :: 3,555 Genes (coding) :: 3,504 CDSs (with protein) :: 3,504 Genes (RNA) :: 65 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 3 Pseudo Genes (total) :: 51 CDSs (without protein) :: 51REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620 CDSs (total) :: 3,555 Genes (coding) :: 3,504 CDSs (with protein) :: 3,504 Genes (RNA) :: 65 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 3 Pseudo Genes (total) :: 51 CDSs (without protein) :: 51 Pseudo Genes (ambiguous residues) :: 0 of 51REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620 CDSs (total) :: 3,555 Genes (coding) :: 3,504 CDSs (with protein) :: 3,504 Genes (RNA) :: 65 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 3 Pseudo Genes (total) :: 51 CDSs (without protein) :: 51 Pseudo Genes (ambiguous residues) :: 0 of 51 Pseudo Genes (frameshifted) :: 14 of 51REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620 CDSs (total) :: 3,555 Genes (coding) :: 3,504 CDSs (with protein) :: 3,504 Genes (RNA) :: 65 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 3 Pseudo Genes (total) :: 51 CDSs (without protein) :: 51 Pseudo Genes (ambiguous residues) :: 0 of 51 Pseudo Genes (frameshifted) :: 14 of 51 Pseudo Genes (incomplete) :: 39 of 51REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620 CDSs (total) :: 3,555 Genes (coding) :: 3,504 CDSs (with protein) :: 3,504 Genes (RNA) :: 65 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 3 Pseudo Genes (total) :: 51 CDSs (without protein) :: 51 Pseudo Genes (ambiguous residues) :: 0 of 51 Pseudo Genes (frameshifted) :: 14 of 51 Pseudo Genes (incomplete) :: 39 of 51 Pseudo Genes (internal stop) :: 3 of 51REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620 CDSs (total) :: 3,555 Genes (coding) :: 3,504 CDSs (with protein) :: 3,504 Genes (RNA) :: 65 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 3 Pseudo Genes (total) :: 51 CDSs (without protein) :: 51 Pseudo Genes (ambiguous residues) :: 0 of 51 Pseudo Genes (frameshifted) :: 14 of 51 Pseudo Genes (incomplete) :: 39 of 51 Pseudo Genes (internal stop) :: 3 of 51 Pseudo Genes (multiple problems) :: 5 of 51REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620 CDSs (total) :: 3,555 Genes (coding) :: 3,504 CDSs (with protein) :: 3,504 Genes (RNA) :: 65 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 3 Pseudo Genes (total) :: 51 CDSs (without protein) :: 51 Pseudo Genes (ambiguous residues) :: 0 of 51 Pseudo Genes (frameshifted) :: 14 of 51 Pseudo Genes (incomplete) :: 39 of 51 Pseudo Genes (internal stop) :: 3 of 51 Pseudo Genes (multiple problems) :: 5 of 51 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620 CDSs (total) :: 3,555 Genes (coding) :: 3,504 CDSs (with protein) :: 3,504 Genes (RNA) :: 65 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 3 Pseudo Genes (total) :: 51 CDSs (without protein) :: 51 Pseudo Genes (ambiguous residues) :: 0 of 51 Pseudo Genes (frameshifted) :: 14 of 51 Pseudo Genes (incomplete) :: 39 of 51 Pseudo Genes (internal stop) :: 3 of 51 Pseudo Genes (multiple problems) :: 5 of 51 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001392.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4084098 Source DNA and bacteria available from John D. Coates (jcoates@nature.berkeley.edu) Contacts: John D. Coates (jcoates@nature.berkeley.edu) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) Meta information: Organism display name: Diaphorobacter sp TPSY GOLD ID: Gi02057 http://genomesonline.org/GOLD_CARDS/Gi02057.html Sequencing Status: Complete Phenotypes: Iron oxidizer, Uranium oxidizer Diseases: None Habitat: Fresh water Oxygen Requirement: Facultative Cell Shape: Rod-shaped Motility: Motile Temperature Range: Mesophile Biotic Relationship: Free living. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 06/23/2023 16:06:21 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,620 CDSs (total) :: 3,555 Genes (coding) :: 3,504 CDSs (with protein) :: 3,504 Genes (RNA) :: 65 rRNAs :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs :: 3, 3, 3 (5S, 16S, 23S) tRNAs :: 53 ncRNAs :: 3 Pseudo Genes (total) :: 51 CDSs (without protein) :: 51 Pseudo Genes (ambiguous residues) :: 0 of 51 Pseudo Genes (frameshifted) :: 14 of 51 Pseudo Genes (incomplete) :: 39 of 51 Pseudo Genes (internal stop) :: 3 of 51 Pseudo Genes (multiple problems) :: 5 of 51 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length.