-- dump date 20140205_000730 -- class Genbank::CDS -- table cds_note -- id note YP_003254644.1 identified by Glimmer3; putative YP_003254645.1 identified by Glimmer3; putative YP_003254646.1 identified by Glimmer3; putative YP_003254647.1 identified by Glimmer3; putative YP_003254648.1 identified by Glimmer3; putative YP_003254649.1 identified by Glimmer3; putative YP_003254650.1 identified by Glimmer3; putative YP_003254651.1 identified by Glimmer3; putative YP_003254652.1 identified by Glimmer3; putative YP_003254653.1 identified by Glimmer3; putative YP_003254654.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine YP_003254655.1 identified by Glimmer3; putative YP_003254656.1 identified by Glimmer3; putative YP_003254657.1 identified by Glimmer3; putative YP_003254658.1 identified by Glimmer3; putative YP_003254659.1 identified by Glimmer3; putative YP_003254660.1 identified by Glimmer3; putative YP_003254661.1 identified by Glimmer3; putative YP_003254662.1 identified by Glimmer3; putative YP_003254663.1 identified by Glimmer3; putative YP_003254664.1 identified by Glimmer3; putative YP_003254665.1 identified by Glimmer3; putative YP_003254666.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_003254667.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_003254668.1 identified by Glimmer3; putative YP_003254669.1 identified by Glimmer3; putative YP_003254670.1 identified by Glimmer3; putative YP_003254671.1 identified by Glimmer3; putative YP_003254672.1 identified by Glimmer3; putative YP_003254673.1 identified by Glimmer3; putative YP_003254674.1 identified by Glimmer3; putative YP_003254675.1 identified by Glimmer3; putative YP_003254676.1 identified by Glimmer3; putative YP_003254677.1 identified by Glimmer3; putative YP_003254678.1 identified by Glimmer3; putative YP_003254679.1 identified by Glimmer3; putative YP_003254680.1 This protein performs the mismatch recognition step during the DNA repair process YP_003254681.1 identified by Glimmer3; putative YP_003254682.1 identified by Glimmer3; putative YP_003254683.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs YP_003254684.1 identified by Glimmer3; putative YP_003254685.1 identified by Glimmer3; putative YP_003254686.1 identified by Glimmer3; putative YP_003254687.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis YP_003254688.1 identified by Glimmer3; putative YP_003254689.1 phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr YP_003254690.1 converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers YP_003254691.1 identified by Glimmer3; putative YP_003254692.1 identified by Glimmer3; putative YP_003254693.1 identified by Glimmer3; putative YP_003254694.1 identified by Glimmer3; putative YP_003254695.1 identified by Glimmer3; putative YP_003254696.1 identified by Glimmer3; putative YP_003254697.1 identified by Glimmer3; putative YP_003254698.1 identified by Glimmer3; putative YP_003254699.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_003254700.1 identified by Glimmer3; putative YP_003254701.1 binds directly to 23S ribosomal RNA YP_003254702.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_003254703.1 identified by Glimmer3; putative YP_003254704.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_003254705.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_003254706.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_003254707.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_003254708.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_003254709.1 one of the stabilizing components for the large ribosomal subunit YP_003254710.1 identified by Glimmer3; putative YP_003254711.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_003254712.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_003254713.1 identified by Glimmer3; putative YP_003254714.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_003254715.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_003254716.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_003254717.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_003254718.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_003254719.1 identified by Glimmer3; putative YP_003254720.1 identified by Glimmer3; putative YP_003254721.1 identified by Glimmer3; putative YP_003254722.1 identified by Glimmer3; putative YP_003254723.1 identified by Glimmer3; putative YP_003254724.1 identified by Glimmer3; putative YP_003254725.1 identified by Glimmer3; putative YP_003254726.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_003254727.1 identified by Glimmer3; putative YP_003254728.1 identified by Glimmer3; putative YP_003254729.1 identified by Glimmer3; putative YP_003254730.1 catalyzes the formation of asparagine from aspartate and ammonia YP_003254731.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase YP_003254732.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway YP_003254733.1 identified by Glimmer3; putative YP_003254734.1 identified by Glimmer3; putative YP_003254735.1 identified by Glimmer3; putative YP_003254736.1 identified by Glimmer3; putative YP_003254737.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_003254738.1 identified by Glimmer3; putative YP_003254739.1 identified by Glimmer3; putative YP_003254740.1 identified by Glimmer3; putative YP_003254741.1 identified by Glimmer3; putative YP_003254742.1 identified by Glimmer3; putative YP_003254743.1 identified by Glimmer3; putative YP_003254744.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_003254745.1 identified by Glimmer3; putative YP_003254746.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_003254747.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_003254749.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate YP_003254750.1 part of the metNIQ transport system for methionine YP_003254751.1 identified by Glimmer3; putative YP_003254752.1 identified by Glimmer3; putative YP_003254753.1 identified by Glimmer3; putative YP_003254754.1 identified by Glimmer3; putative YP_003254755.1 identified by Glimmer3; putative YP_003254756.1 identified by Glimmer3; putative YP_003254757.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_003254758.1 identified by Glimmer3; putative YP_003254759.1 identified by Glimmer3; putative YP_003254760.1 identified by Glimmer3; putative YP_003254761.1 identified by Glimmer3; putative YP_003254762.1 identified by Glimmer3; putative YP_003254763.1 identified by Glimmer3; putative YP_003254764.1 identified by Glimmer3; putative YP_003254765.1 identified by Glimmer3; putative YP_003254766.1 identified by Glimmer3; putative YP_003254767.1 identified by Glimmer3; putative YP_003254768.1 identified by Glimmer3; putative YP_003254769.1 identified by Glimmer3; putative YP_003254770.1 identified by Glimmer3; putative YP_003254771.1 identified by Glimmer3; putative YP_003254772.1 identified by Glimmer3; putative YP_003254773.1 identified by Glimmer3; putative YP_003254774.1 identified by Glimmer3; putative YP_003254775.1 identified by Glimmer3; putative YP_003254776.1 identified by Glimmer3; putative YP_003254777.1 identified by Glimmer3; putative YP_003254778.1 identified by Glimmer3; putative YP_003254779.1 identified by Glimmer3; putative YP_003254780.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_003254781.1 identified by Glimmer3; putative YP_003254782.1 identified by Glimmer3; putative YP_003254783.1 identified by Glimmer3; putative YP_003254784.1 heat shock protein involved in degradation of misfolded proteins YP_003254785.1 heat shock protein involved in degradation of misfolded proteins YP_003254786.1 identified by Glimmer3; putative YP_003254787.1 Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity YP_003254788.1 identified by Glimmer3; putative YP_003254789.1 identified by Glimmer3; putative YP_003254790.1 identified by Glimmer3; putative YP_003254791.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_003254792.1 identified by Glimmer3; putative YP_003254793.1 DHBP synthase; functions during riboflavin biosynthesis YP_003254794.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003254795.1 identified by Glimmer3; putative YP_003254796.1 identified by Glimmer3; putative YP_003254797.1 identified by Glimmer3; putative YP_003254798.1 identified by Glimmer3; putative YP_003254799.1 identified by Glimmer3; putative YP_003254800.1 identified by Glimmer3; putative YP_003254801.1 identified by Glimmer3; putative YP_003254802.1 identified by Glimmer3; putative YP_003254803.1 identified by Glimmer3; putative YP_003254804.1 identified by Glimmer3; putative YP_003254805.1 identified by Glimmer3; putative YP_003254806.1 predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein YP_003254807.1 identified by Glimmer3; putative YP_003254808.1 identified by Glimmer3; putative YP_003254809.1 identified by Glimmer3; putative YP_003254810.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_003254811.1 identified by Glimmer3; putative YP_003254812.1 identified by Glimmer3; putative YP_003254813.1 identified by Glimmer3; putative YP_003254814.1 identified by Glimmer3; putative YP_003254815.1 facilitates an early step in the assembly of the 50S subunit of the ribosome YP_003254816.1 identified by Glimmer3; putative YP_003254817.1 identified by Glimmer3; putative YP_003254818.1 identified by Glimmer3; putative YP_003254819.1 identified by Glimmer3; putative YP_003254820.1 identified by Glimmer3; putative YP_003254821.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_003254822.1 identified by Glimmer3; putative YP_003254823.1 identified by Glimmer3; putative YP_003254824.1 identified by Glimmer3; putative YP_003254825.1 identified by Glimmer3; putative YP_003254826.1 identified by Glimmer3; putative YP_003254827.1 identified by Glimmer3; putative YP_003254828.1 identified by Glimmer3; putative YP_003254829.1 identified by Glimmer3; putative YP_003254830.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_003254831.1 identified by Glimmer3; putative YP_003254832.1 identified by Glimmer3; putative YP_003254833.1 identified by Glimmer3; putative YP_003254834.1 identified by Glimmer3; putative YP_003254835.1 identified by Glimmer3; putative YP_003254836.1 identified by Glimmer3; putative YP_003254837.1 identified by Glimmer3; putative YP_003254838.1 identified by Glimmer3; putative YP_003254839.1 catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction YP_003254840.1 identified by Glimmer3; putative YP_003254841.1 identified by Glimmer3; putative YP_003254842.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA YP_003254843.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway YP_003254844.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC YP_003254845.1 identified by Glimmer3; putative YP_003254846.1 identified by Glimmer3; putative YP_003254847.1 identified by Glimmer3; putative YP_003254848.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_003254849.1 identified by Glimmer3; putative YP_003254850.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_003254851.1 identified by Glimmer3; putative YP_003254852.1 identified by Glimmer3; putative YP_003254853.1 identified by Glimmer3; putative YP_003254854.1 identified by Glimmer3; putative YP_003254855.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_003254856.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_003254857.2 identified by Glimmer3; putative YP_003254858.1 identified by Glimmer3; putative YP_003254859.1 identified by Glimmer3; putative YP_003254860.1 identified by Glimmer3; putative YP_003254861.1 identified by Glimmer3; putative YP_003254862.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_003254863.1 identified by Glimmer3; putative YP_003254864.1 identified by Glimmer3; putative YP_003254865.1 identified by Glimmer3; putative YP_003254866.1 identified by Glimmer3; putative YP_003254867.1 identified by Glimmer3; putative YP_003254868.1 identified by Glimmer3; putative YP_003254869.1 identified by Glimmer3; putative YP_003254870.1 identified by Glimmer3; putative YP_003254871.1 identified by Glimmer3; putative YP_003254872.1 identified by Glimmer3; putative YP_003254873.1 identified by Glimmer3; putative YP_003254874.1 identified by Glimmer3; putative YP_003254875.1 identified by Glimmer3; putative YP_003254876.1 Catalyzes the phosphorylation of UMP to UDP YP_003254877.1 identified by Glimmer3; putative YP_003254878.1 identified by Glimmer3; putative YP_003254879.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_003254880.1 identified by Glimmer3; putative YP_003254881.1 identified by Glimmer3; putative YP_003254882.1 identified by Glimmer3; putative YP_003254883.1 identified by Glimmer3; putative YP_003254884.1 identified by Glimmer3; putative YP_003254885.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_003254886.1 identified by Glimmer3; putative YP_003254887.1 identified by Glimmer3; putative YP_003254888.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_003254889.1 identified by Glimmer3; putative YP_003254890.1 identified by Glimmer3; putative YP_003254891.1 identified by Glimmer3; putative YP_003254892.1 identified by Glimmer3; putative YP_003254893.1 identified by Glimmer3; putative YP_003254894.1 identified by Glimmer3; putative YP_003254895.1 identified by Glimmer3; putative YP_003254897.1 identified by Glimmer3; putative YP_003254898.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_003254899.1 identified by Glimmer3; putative YP_003254900.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_003254901.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_003254902.1 identified by Glimmer3; putative YP_003254903.1 identified by Glimmer3; putative YP_003254904.1 identified by Glimmer3; putative YP_003254905.1 identified by Glimmer3; putative YP_003254906.1 identified by Glimmer3; putative YP_003254907.1 identified by Glimmer3; putative YP_003254908.1 identified by Glimmer3; putative YP_003254909.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_003254910.1 identified by Glimmer3; putative YP_003254911.1 identified by Glimmer3; putative YP_003254912.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_003254913.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_003254914.1 identified by Glimmer3; putative YP_003254915.1 identified by Glimmer3; putative YP_003254916.1 identified by Glimmer3; putative YP_003254917.1 identified by Glimmer3; putative YP_003254918.1 identified by Glimmer3; putative YP_003254919.1 identified by Glimmer3; putative YP_003254920.1 identified by Glimmer3; putative YP_003254921.1 identified by Glimmer3; putative YP_003254922.1 identified by Glimmer3; putative YP_003254923.1 identified by Glimmer3; putative YP_003254924.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs YP_003254925.1 identified by Glimmer3; putative YP_003254926.1 identified by Glimmer3; putative YP_003254927.1 identified by Glimmer3; putative YP_003254928.1 identified by Glimmer3; putative YP_003254929.1 Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA YP_003254930.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis YP_003254931.1 identified by Glimmer3; putative YP_003254932.1 identified by Glimmer3; putative YP_003254933.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB YP_003254934.1 identified by Glimmer3; putative YP_003254935.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_003254936.1 identified by Glimmer3; putative YP_003254937.1 identified by Glimmer3; putative YP_003254938.1 identified by Glimmer3; putative YP_003254939.1 identified by Glimmer3; putative YP_003254940.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_003254941.1 identified by Glimmer3; putative YP_003254942.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_003254943.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_003254944.1 identified by Glimmer3; putative YP_003254945.1 identified by Glimmer3; putative YP_003254946.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_003254947.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation YP_003254948.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_003254949.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_003254950.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_003254951.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_003254952.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_003254953.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_003254954.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_003254955.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_003254956.1 identified by Glimmer3; putative YP_003254957.1 identified by Glimmer3; putative YP_003254958.1 identified by Glimmer3; putative YP_003254959.1 identified by Glimmer3; putative YP_003254960.1 identified by Glimmer3; putative YP_003254961.1 identified by Glimmer3; putative YP_003254962.1 identified by Glimmer3; putative YP_003254963.1 identified by Glimmer3; putative YP_003254964.1 identified by Glimmer3; putative YP_003254965.1 identified by Glimmer3; putative YP_003254966.1 identified by Glimmer3; putative YP_003254967.1 identified by Glimmer3; putative YP_003254968.1 identified by Glimmer3; putative YP_003254969.1 identified by Glimmer3; putative YP_003254970.1 identified by Glimmer3; putative YP_003254971.1 identified by Glimmer3; putative YP_003254972.1 identified by Glimmer3; putative YP_003254973.1 identified by Glimmer3; putative YP_003254974.1 with XylFH is part of the high affinity xylose ABC transporter YP_003254975.1 periplasmic substrate-binding component of the ATP-dependent xylose transport system; high affinity YP_003254976.1 catalyzes the interconversion of D-xylose to D-xylulose YP_003254977.1 identified by Glimmer3; putative YP_003254978.1 identified by Glimmer3; putative YP_003254979.1 identified by Glimmer3; putative YP_003254980.1 identified by Glimmer3; putative YP_003254981.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome YP_003254982.1 identified by Glimmer3; putative YP_003254983.1 identified by Glimmer3; putative YP_003254984.1 identified by Glimmer3; putative YP_003254985.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_003254986.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_003254987.1 identified by Glimmer3; putative YP_003254988.1 identified by Glimmer3; putative YP_003254989.1 identified by Glimmer3; putative YP_003254990.1 identified by Glimmer3; putative YP_003254991.1 identified by Glimmer3; putative YP_003254992.1 identified by Glimmer3; putative YP_003254993.1 identified by Glimmer3; putative YP_003254994.1 putative ABC transporter, membrane protein YP_003254995.1 identified by Glimmer3; putative YP_003254996.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate YP_003254997.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_003254998.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein YP_003254999.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_003255000.1 identified by Glimmer3; putative YP_003255001.1 catalyzes the modification of U13 in tRNA(Glu) YP_003255002.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_003255003.1 identified by Glimmer3; putative YP_003255004.1 identified by Glimmer3; putative YP_003255005.1 identified by Glimmer3; putative YP_003255006.1 identified by Glimmer3; putative YP_003255007.1 identified by Glimmer3; putative YP_003255008.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A YP_003255009.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_003255010.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position YP_003255011.1 identified by Glimmer3; putative YP_003255012.1 identified by Glimmer3; putative YP_003255013.1 identified by Glimmer3; putative YP_003255014.1 identified by Glimmer3; putative YP_003255015.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA YP_003255016.1 Represses a number of genes involved in the response to DNA damage YP_003255017.1 identified by Glimmer3; putative YP_003255018.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_003255019.1 binds single-stranded DNA at the primosome assembly site YP_003255020.1 identified by Glimmer3; putative YP_003255021.1 identified by Glimmer3; putative YP_003255022.1 identified by Glimmer3; putative YP_003255023.1 hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic YP_003255024.1 identified by Glimmer3; putative YP_003255025.1 identified by Glimmer3; putative YP_003255026.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA YP_003255027.1 identified by Glimmer3; putative YP_003255028.1 functions in MreBCD complex in some organisms YP_003255029.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_003255030.1 identified by Glimmer3; putative YP_003255031.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_003255032.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_003255033.1 Essential for efficient processing of 16S rRNA YP_003255034.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_003255035.1 identified by Glimmer3; putative YP_003255036.1 identified by Glimmer3; putative YP_003255037.1 identified by Glimmer3; putative YP_003255038.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown YP_003255039.1 identified by Glimmer3; putative YP_003255040.1 identified by Glimmer3; putative YP_003255041.1 identified by Glimmer3; putative YP_003255042.1 responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA YP_003255043.1 identified by Glimmer3; putative YP_003255044.1 identified by Glimmer3; putative YP_003255045.1 identified by Glimmer3; putative YP_003255046.1 identified by Glimmer3; putative YP_003255047.1 identified by Glimmer3; putative YP_003255048.1 responsible for the influx of magnesium ions YP_003255049.1 identified by Glimmer3; putative YP_003255050.1 identified by Glimmer3; putative YP_003255051.1 identified by Glimmer3; putative YP_003255052.1 identified by Glimmer3; putative YP_003255053.1 identified by Glimmer3; putative YP_003255054.1 identified by Glimmer3; putative YP_003255055.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_003255056.1 identified by Glimmer3; putative YP_003255057.1 identified by Glimmer3; putative YP_003255058.1 identified by Glimmer3; putative YP_003255059.1 identified by Glimmer3; putative YP_003255060.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_003255061.1 identified by Glimmer3; putative YP_003255062.1 identified by Glimmer3; putative YP_003255063.1 identified by Glimmer3; putative YP_003255064.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_003255065.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_003255066.1 required for 70S ribosome assembly YP_003255067.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_003255068.1 identified by Glimmer3; putative YP_003255069.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_003255070.1 identified by Glimmer3; putative YP_003255071.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly YP_003255072.1 identified by Glimmer3; putative YP_003255073.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons YP_003255074.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense YP_003255075.1 identified by Glimmer3; putative YP_003255076.1 identified by Glimmer3; putative YP_003255077.1 identified by Glimmer3; putative YP_003255078.1 identified by Glimmer3; putative YP_003255079.1 identified by Glimmer3; putative YP_003255080.1 identified by Glimmer3; putative YP_003255081.1 identified by Glimmer3; putative YP_003255082.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_003255083.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_003255084.1 identified by Glimmer3; putative YP_003255085.1 identified by Glimmer3; putative YP_003255086.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_003255087.1 identified by Glimmer3; putative YP_003255088.1 identified by Glimmer3; putative YP_003255089.1 identified by Glimmer3; putative YP_003255090.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_003255091.1 identified by Glimmer3; putative YP_003255092.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_003255093.1 identified by Glimmer3; putative YP_003255094.1 identified by Glimmer3; putative YP_003255095.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_003255096.1 identified by Glimmer3; putative YP_003255097.1 identified by Glimmer3; putative YP_003255098.1 identified by Glimmer3; putative YP_003255099.1 identified by Glimmer3; putative YP_003255100.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_003255101.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_003255102.1 identified by Glimmer3; putative YP_003255103.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_003255104.1 identified by Glimmer3; putative YP_003255105.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis YP_003255106.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_003255107.1 identified by Glimmer3; putative YP_003255108.1 identified by Glimmer3; putative YP_003255109.1 identified by Glimmer3; putative YP_003255110.1 identified by Glimmer3; putative YP_003255111.1 identified by Glimmer3; putative YP_003255112.1 identified by Glimmer3; putative YP_003255113.1 identified by Glimmer3; putative YP_003255114.1 identified by Glimmer3; putative YP_003255115.1 identified by Glimmer3; putative YP_003255116.1 identified by Glimmer3; putative YP_003255117.1 identified by Glimmer3; putative YP_003255118.1 identified by Glimmer3; putative YP_003255119.1 identified by Glimmer3; putative YP_003255120.1 identified by Glimmer3; putative YP_003255121.1 identified by Glimmer3; putative YP_003255122.1 identified by Glimmer3; putative YP_003255123.1 identified by Glimmer3; putative YP_003255124.1 identified by Glimmer3; putative YP_003255125.1 binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane YP_003255126.1 identified by Glimmer3; putative YP_003255127.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_003255128.1 identified by Glimmer3; putative YP_003255129.1 identified by Glimmer3; putative YP_003255130.1 identified by Glimmer3; putative YP_003255131.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_003255132.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_003255133.1 identified by Glimmer3; putative YP_003255134.1 identified by Glimmer3; putative YP_003255135.1 identified by Glimmer3; putative YP_003255136.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_003255137.1 identified by Glimmer3; putative YP_003255138.1 identified by Glimmer3; putative YP_003255139.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose YP_003255140.1 identified by Glimmer3; putative YP_003255141.1 identified by Glimmer3; putative YP_003255142.1 identified by Glimmer3; putative YP_003255143.1 identified by Glimmer3; putative YP_003255144.1 identified by Glimmer3; putative YP_003255145.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_003255146.1 identified by Glimmer3; putative YP_003255147.1 identified by Glimmer3; putative YP_003255148.1 identified by Glimmer3; putative YP_003255149.1 identified by Glimmer3; putative YP_003255150.1 identified by Glimmer3; putative YP_003255151.1 identified by Glimmer3; putative YP_003255152.1 identified by Glimmer3; putative YP_003255153.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_003255154.1 identified by Glimmer3; putative YP_003255155.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_003255156.1 identified by Glimmer3; putative YP_003255157.1 identified by Glimmer3; putative YP_003255158.1 identified by Glimmer3; putative YP_003255159.1 identified by Glimmer3; putative YP_003255160.1 identified by Glimmer3; putative YP_003255161.1 identified by Glimmer3; putative YP_003255162.1 identified by Glimmer3; putative YP_003255163.1 identified by Glimmer3; putative YP_003255164.1 identified by Glimmer3; putative YP_003255165.1 identified by Glimmer3; putative YP_003255166.1 identified by Glimmer3; putative YP_003255167.1 identified by Glimmer3; putative YP_003255168.1 identified by Glimmer3; putative YP_003255169.1 identified by Glimmer3; putative YP_003255170.1 identified by Glimmer3; putative YP_003255171.1 identified by Glimmer3; putative YP_003255172.1 identified by Glimmer3; putative YP_003255173.1 identified by Glimmer3; putative YP_003255174.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_003255175.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_003255176.1 identified by Glimmer3; putative YP_003255177.1 identified by Glimmer3; putative YP_003255178.1 identified by Glimmer3; putative YP_003255179.1 identified by Glimmer3; putative YP_003255180.1 identified by Glimmer3; putative YP_003255181.1 identified by Glimmer3; putative YP_003255182.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_003255183.1 identified by Glimmer3; putative YP_003255184.1 identified by Glimmer3; putative YP_003255185.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source YP_003255186.1 identified by Glimmer3; putative YP_003255187.1 identified by Glimmer3; putative YP_003255188.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_003255189.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_003255190.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_003255191.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_003255192.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_003255193.1 identified by Glimmer3; putative YP_003255194.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_003255195.1 late assembly protein YP_003255196.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_003255197.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_003255198.1 identified by Glimmer3; putative YP_003255199.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_003255200.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_003255201.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_003255202.1 is a component of the macrolide binding site in the peptidyl transferase center YP_003255203.1 identified by Glimmer3; putative YP_003255204.1 identified by Glimmer3; putative YP_003255205.1 catalyzes the formation of NAD(+) from nicotinamide ribonucleotide YP_003255206.1 identified by Glimmer3; putative YP_003255207.1 identified by Glimmer3; putative YP_003255208.1 identified by Glimmer3; putative YP_003255209.1 identified by Glimmer3; putative YP_003255210.1 identified by Glimmer3; putative YP_003255211.1 catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX YP_003255213.1 identified by Glimmer3; putative YP_003255214.1 identified by Glimmer3; putative YP_003255215.1 identified by Glimmer3; putative YP_003255216.1 identified by Glimmer3; putative YP_003255217.1 identified by Glimmer3; putative YP_003255218.1 identified by Glimmer3; putative YP_003255219.1 identified by Glimmer3; putative YP_003255220.1 identified by Glimmer3; putative YP_003255221.1 identified by Glimmer3; putative YP_003255222.1 catalyzes the formation of fumarate from aspartate YP_003255223.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein YP_003255224.1 identified by Glimmer3; putative YP_003255225.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_003255226.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_003255227.1 identified by Glimmer3; putative YP_003255228.1 identified by Glimmer3; putative YP_003255229.1 identified by Glimmer3; putative YP_003255230.1 identified by Glimmer3; putative YP_003255231.1 identified by Glimmer3; putative YP_003255232.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S] YP_003255233.1 identified by Glimmer3; putative YP_003255234.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_003255235.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_003255236.1 identified by Glimmer3; putative YP_003255237.1 identified by Glimmer3; putative YP_003255238.1 identified by Glimmer3; putative YP_003255239.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_003255240.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_003255241.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system YP_003255242.1 identified by Glimmer3; putative YP_003255243.1 identified by Glimmer3; putative YP_003255244.1 identified by Glimmer3; putative YP_003255245.1 identified by Glimmer3; putative YP_003255246.1 identified by Glimmer3; putative YP_003255247.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_003255248.1 identified by Glimmer3; putative YP_003255249.1 identified by Glimmer3; putative YP_003255250.1 Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues YP_003255251.1 identified by Glimmer3; putative YP_003255252.1 identified by Glimmer3; putative YP_003255253.1 identified by Glimmer3; putative YP_003255254.1 identified by Glimmer3; putative YP_003255255.1 identified by Glimmer3; putative YP_003255256.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_003255257.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_003255258.1 identified by Glimmer3; putative YP_003255259.1 identified by Glimmer3; putative YP_003255260.1 identified by Glimmer3; putative YP_003255261.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_003255262.1 identified by Glimmer3; putative YP_003255263.1 identified by Glimmer3; putative YP_003255264.1 identified by Glimmer3; putative YP_003255265.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_003255266.1 identified by Glimmer3; putative YP_003255267.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_003255268.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_003255269.1 identified by Glimmer3; putative YP_003255270.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_003255271.1 identified by Glimmer3; putative YP_003255272.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis YP_003255273.1 identified by Glimmer3; putative YP_003255274.1 identified by Glimmer3; putative YP_003255275.1 identified by Glimmer3; putative YP_003255276.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003255277.1 identified by Glimmer3; putative YP_003255278.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_003255279.1 identified by Glimmer3; putative YP_003255280.1 identified by Glimmer3; putative YP_003255281.1 identified by Glimmer3; putative YP_003255282.1 identified by Glimmer3; putative YP_003255283.1 identified by Glimmer3; putative YP_003255284.1 identified by Glimmer3; putative YP_003255285.1 part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors YP_003255286.1 identified by Glimmer3; putative YP_003255287.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_003255288.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease YP_003255289.1 identified by Glimmer3; putative YP_003255290.1 identified by Glimmer3; putative YP_003255291.1 identified by Glimmer3; putative YP_003255292.1 identified by Glimmer3; putative YP_003255293.1 identified by Glimmer3; putative YP_003255294.1 identified by Glimmer3; putative YP_003255295.1 identified by Glimmer3; putative YP_003255296.1 identified by Glimmer3; putative YP_003255297.1 identified by Glimmer3; putative YP_003255298.1 identified by Glimmer3; putative YP_003255299.1 identified by Glimmer3; putative YP_003255300.1 identified by Glimmer3; putative YP_003255301.1 identified by Glimmer3; putative YP_003255302.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_003255303.1 identified by Glimmer3; putative YP_003255304.1 identified by Glimmer3; putative YP_003255305.1 identified by Glimmer3; putative YP_003255306.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_003255307.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates YP_003255308.1 identified by Glimmer3; putative YP_003255309.1 identified by Glimmer3; putative YP_003255310.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_003255311.1 identified by Glimmer3; putative YP_003255312.1 identified by Glimmer3; putative YP_003255313.1 identified by Glimmer3; putative YP_003255314.1 identified by Glimmer3; putative YP_003255315.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP YP_003255316.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_003255317.1 identified by Glimmer3; putative YP_003255318.1 identified by Glimmer3; putative YP_003255319.1 identified by Glimmer3; putative YP_003255320.1 identified by Glimmer3; putative YP_003255321.1 identified by Glimmer3; putative YP_003255322.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_003255323.1 identified by Glimmer3; putative YP_003255324.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_003255325.1 identified by Glimmer3; putative YP_003255326.1 identified by Glimmer3; putative YP_003255327.1 identified by Glimmer3; putative YP_003255328.1 identified by Glimmer3; putative YP_003255329.1 identified by Glimmer3; putative YP_003255330.1 identified by Glimmer3; putative YP_003255331.1 identified by Glimmer3; putative YP_003255332.1 identified by Glimmer3; putative YP_003255333.1 identified by Glimmer3; putative YP_003255334.1 identified by Glimmer3; putative YP_003255335.1 identified by Glimmer3; putative YP_003255336.1 identified by Glimmer3; putative YP_003255337.1 identified by Glimmer3; putative YP_003255338.1 identified by Glimmer3; putative YP_003255339.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_003255340.1 negatively supercoils closed circular double-stranded DNA YP_003255341.1 identified by Glimmer3; putative YP_003255342.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly YP_003255343.1 identified by Glimmer3; putative YP_003255344.1 identified by Glimmer3; putative YP_003255345.1 identified by Glimmer3; putative YP_003255346.1 identified by Glimmer3; putative YP_003255347.1 determines N-hexane tolerance and is involved in outer membrane permeability YP_003255348.1 identified by Glimmer3; putative YP_003255349.1 identified by Glimmer3; putative YP_003255350.1 identified by Glimmer3; putative YP_003255351.1 identified by Glimmer3; putative YP_003255352.1 identified by Glimmer3; putative YP_003255353.1 identified by Glimmer3; putative YP_003255354.1 periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP YP_003255355.1 identified by Glimmer3; putative YP_003255356.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_003255357.1 identified by Glimmer3; putative YP_003255358.1 identified by Glimmer3; putative YP_003255359.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_003255360.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_003255361.1 identified by Glimmer3; putative YP_003255362.1 identified by Glimmer3; putative YP_003255363.1 identified by Glimmer3; putative YP_003255364.1 identified by Glimmer3; putative YP_003255365.1 identified by Glimmer3; putative YP_003255366.1 identified by Glimmer3; putative YP_003255367.1 identified by Glimmer3; putative YP_003255368.1 identified by Glimmer3; putative YP_003255369.1 identified by Glimmer3; putative YP_003255370.1 identified by Glimmer3; putative YP_003255371.1 identified by Glimmer3; putative YP_003255372.1 identified by Glimmer3; putative YP_003255373.1 identified by Glimmer3; putative YP_003255374.1 identified by Glimmer3; putative YP_003255375.1 identified by Glimmer3; putative YP_003255376.1 identified by Glimmer3; putative YP_003255377.1 identified by Glimmer3; putative YP_003255378.1 identified by Glimmer3; putative YP_003255379.1 identified by Glimmer3; putative YP_003255380.1 identified by Glimmer3; putative YP_003255381.1 identified by Glimmer3; putative YP_003255382.1 identified by Glimmer3; putative YP_003255383.1 identified by Glimmer3; putative YP_003255384.1 identified by Glimmer3; putative YP_003255385.1 identified by Glimmer3; putative YP_003255386.1 identified by Glimmer3; putative YP_003255387.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate YP_003255388.1 With ArtMQJI transports arginine across the inner membrane YP_003255389.1 identified by Glimmer3; putative YP_003255390.1 with ArtPMJI transports arginine across the inner membrane YP_003255391.1 with ArtPQJI acts to transport arginine across the inner membrane YP_003255392.1 identified by Glimmer3; putative YP_003255393.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_003255394.1 identified by Glimmer3; putative YP_003255395.1 identified by Glimmer3; putative YP_003255396.1 identified by Glimmer3; putative YP_003255397.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_003255398.1 identified by Glimmer3; putative YP_003255399.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_003255400.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_003255401.1 identified by Glimmer3; putative YP_003255402.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_003255403.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_003255404.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_003255405.1 identified by Glimmer3; putative YP_003255406.1 identified by Glimmer3; putative YP_003255407.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_003255408.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_003255409.1 identified by Glimmer3; putative YP_003255410.1 identified by Glimmer3; putative YP_003255411.1 molecular chaperone YP_003255412.1 identified by Glimmer3; putative YP_003255413.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_003255414.1 identified by Glimmer3; putative YP_003255415.1 identified by Glimmer3; putative YP_003255416.1 identified by Glimmer3; putative YP_003255417.1 identified by Glimmer3; putative YP_003255418.1 identified by Glimmer3; putative YP_003255419.1 identified by Glimmer3; putative YP_003255420.1 identified by Glimmer3; putative YP_003255421.1 identified by Glimmer3; putative YP_003255422.1 identified by Glimmer3; putative YP_003255423.1 identified by Glimmer3; putative YP_003255424.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA YP_003255425.1 in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane YP_003255426.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_003255427.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_003255428.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_003255429.1 identified by Glimmer3; putative YP_003255430.1 lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_003255431.1 Part of the FecBCDE citrate-dependent iron (III) transport system YP_003255432.1 Ferric citrate binds FecA and is transported across the outer membrane while transmits a signal across the cytoplasmic membrane protein FecR. FecR transmits a signal across the membrane and activates the cytoplasmic FecI that directs the RNA polymerase to express the fecABCDE operon (which encodes the ferric citrate outer membrane receptor and the ferric citrate ABC transporter), as well as fecIR. FecD is one of two (along with FecC) integral membrane protein components of the iron dicitrate ABC transporter. YP_003255433.1 part of the FecBCDE citrate-dependent iron (III) transport system YP_003255434.1 part of the ABC transporter involved in the uptake of citrate-dependent Fe(3+) YP_003255435.1 identified by Glimmer3; putative YP_003255436.1 identified by Glimmer3; putative YP_003255437.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_003255438.1 decatenates replicating daughter chromosomes YP_003255439.1 identified by Glimmer3; putative YP_003255440.1 identified by Glimmer3; putative YP_003255441.1 identified by Glimmer3; putative YP_003255442.1 identified by Glimmer3; putative YP_003255443.1 identified by Glimmer3; putative YP_003255444.1 identified by Glimmer3; putative YP_003255445.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription YP_003255446.1 identified by Glimmer3; putative YP_003255447.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_003255448.1 identified by Glimmer3; putative YP_003255449.1 Involved in cell division; probably involved in intracellular septation YP_003255450.1 identified by Glimmer3; putative YP_003255451.1 identified by Glimmer3; putative YP_003255452.1 identified by Glimmer3; putative YP_003255453.1 identified by Glimmer3; putative YP_003255454.1 identified by Glimmer3; putative YP_003255455.1 identified by Glimmer3; putative YP_003255456.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_003255457.1 identified by Glimmer3; putative YP_003255458.1 catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules YP_003255459.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_003255460.1 identified by Glimmer3; putative YP_003255461.1 identified by Glimmer3; putative YP_003255462.1 ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex YP_003255463.1 with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains YP_003255464.1 identified by Glimmer3; putative YP_003255465.1 identified by Glimmer3; putative YP_003255466.1 catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P YP_003255467.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism YP_003255468.1 catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose YP_003255469.1 identified by Glimmer3; putative YP_003255470.1 identified by Glimmer3; putative YP_003255471.1 identified by Glimmer3; putative YP_003255472.1 identified by Glimmer3; putative YP_003255473.1 identified by Glimmer3; putative YP_003255474.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate YP_003255475.1 identified by Glimmer3; putative YP_003255476.1 identified by Glimmer3; putative YP_003255477.1 identified by Glimmer3; putative YP_003255478.1 Transfers the fatty acyl group on membrane lipoproteins YP_003255479.1 identified by Glimmer3; putative YP_003255480.1 identified by Glimmer3; putative YP_003255481.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide YP_003255482.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_003255483.1 identified by Glimmer3; putative YP_003255484.1 identified by Glimmer3; putative YP_003255485.1 identified by Glimmer3; putative YP_003255486.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_003255487.1 identified by Glimmer3; putative YP_003255488.1 identified by Glimmer3; putative YP_003255489.1 involved in the maturation of iron-sulfur cluster-containing proteins YP_003255490.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins YP_003255491.1 identified by Glimmer3; putative YP_003255492.1 identified by Glimmer3; putative YP_003255493.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis YP_003255494.1 identified by Glimmer3; putative YP_003255495.1 identified by Glimmer3; putative YP_003255496.1 identified by Glimmer3; putative YP_003255497.1 identified by Glimmer3; putative YP_003255498.1 Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import YP_003255499.1 identified by Glimmer3; putative YP_003255500.1 identified by Glimmer3; putative YP_003255501.1 identified by Glimmer3; putative YP_003255502.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_003255503.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_003255504.1 identified by Glimmer3; putative YP_003255505.1 identified by Glimmer3; putative YP_003255506.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_003255507.1 identified by Glimmer3; putative YP_003255508.1 identified by Glimmer3; putative YP_003255509.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_003255510.1 identified by Glimmer3; putative YP_003255511.1 identified by Glimmer3; putative YP_003255512.1 involved in the processing of the 5'end of 16S rRNA YP_003255513.1 cofactor involved in the reduction of disulfides YP_003255514.1 identified by Glimmer3; putative YP_003255515.1 identified by Glimmer3; putative YP_003255516.1 identified by Glimmer3; putative YP_003255517.1 identified by Glimmer3; putative YP_003255518.1 identified by Glimmer3; putative YP_003255519.1 identified by Glimmer3; putative YP_003255520.1 identified by Glimmer3; putative YP_003255521.1 identified by Glimmer3; putative YP_003255522.1 identified by Glimmer3; putative YP_003255523.1 identified by Glimmer3; putative YP_003255524.1 identified by Glimmer3; putative YP_003255525.1 identified by Glimmer3; putative YP_003255526.1 identified by Glimmer3; putative YP_003255527.1 identified by Glimmer3; putative YP_003255528.1 catalyzes the formation of L-homocysteine from cystathionine YP_003255529.1 identified by Glimmer3; putative YP_003255530.1 identified by Glimmer3; putative YP_003255531.1 identified by Glimmer3; putative YP_003255532.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_003255533.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_003255534.1 identified by Glimmer3; putative YP_003255535.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_003255536.1 identified by Glimmer3; putative YP_003255537.1 identified by Glimmer3; putative YP_003255538.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_003255539.1 identified by Glimmer3; putative YP_003255540.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_003255541.1 identified by Glimmer3; putative YP_003255542.1 identified by Glimmer3; putative YP_003255543.1 identified by Glimmer3; putative YP_003255544.1 identified by Glimmer3; putative YP_003255545.1 identified by Glimmer3; putative YP_003255546.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_003255547.1 identified by Glimmer3; putative YP_003255548.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_003255549.1 identified by Glimmer3; putative YP_003255550.1 identified by Glimmer3; putative YP_003255551.1 identified by Glimmer3; putative YP_003255552.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_003255553.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_003255554.1 identified by Glimmer3; putative YP_003255556.1 identified by Glimmer3; putative YP_003255557.1 identified by Glimmer3; putative YP_003255558.1 identified by Glimmer3; putative YP_003255559.1 identified by Glimmer3; putative YP_003255560.1 identified by Glimmer3; putative YP_003255561.1 identified by Glimmer3; putative YP_003255562.1 identified by Glimmer3; putative YP_003255563.1 identified by Glimmer3; putative YP_003255564.1 identified by Glimmer3; putative YP_003255565.1 identified by Glimmer3; putative YP_003255566.1 identified by Glimmer3; putative YP_003255567.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_003255568.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_003255569.1 identified by Glimmer3; putative YP_003255570.1 identified by Glimmer3; putative YP_003255571.1 identified by Glimmer3; putative YP_003255572.1 identified by Glimmer3; putative YP_003255573.1 identified by Glimmer3; putative YP_003255574.1 identified by Glimmer3; putative YP_003255575.1 identified by Glimmer3; putative YP_003255576.1 identified by Glimmer3; putative YP_003255577.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_003255578.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_003255579.1 identified by Glimmer3; putative YP_003255580.1 Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system YP_003255581.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose YP_003255582.1 identified by Glimmer3; putative YP_003255583.1 identified by Glimmer3; putative YP_003255584.1 identified by Glimmer3; putative YP_003255585.1 identified by Glimmer3; putative YP_003255586.1 catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine YP_003255587.1 catalyzes the formation of anthranilate from chorismate and glutamine; functions in tryptophan biosynthesis YP_003255588.1 Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor YP_003255589.1 identified by Glimmer3; putative YP_003255590.1 identified by Glimmer3; putative YP_003255591.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane YP_003255592.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_003255593.1 identified by Glimmer3; putative YP_003255594.1 identified by Glimmer3; putative YP_003255595.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_003255596.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_003255597.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_003255598.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_003255599.1 identified by Glimmer3; putative YP_003255600.1 identified by Glimmer3; putative YP_003255601.1 identified by Glimmer3; putative YP_003255602.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_003255603.1 identified by Glimmer3; putative YP_003255604.1 identified by Glimmer3; putative YP_003255605.1 identified by Glimmer3; putative YP_003255606.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA YP_003255607.1 Catalyzes the rate-limiting step in dNTP synthesis YP_003255608.1 identified by Glimmer3; putative; similar to type I restriction enzyme EcoR124II R protein YP_003255609.1 identified by Glimmer3; putative YP_003255610.1 identified by Glimmer3; putative YP_003255611.1 identified by Glimmer3; putative YP_003255612.1 identified by Glimmer3; putative YP_003255613.1 identified by Glimmer3; putative YP_003255614.1 periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds YP_003255615.1 with MalKFE is involved in the transport of maltose into the cell YP_003255616.1 with MalKGE is involved in maltose transport into the cell YP_003255617.1 identified by Glimmer3; putative YP_003255618.1 functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis YP_003255619.1 with malEFG is involved in import of maltose/maltodextrin YP_003255620.1 porin involved in the transport of maltose and maltodextrins YP_003255621.1 identified by Glimmer3; putative YP_003255622.1 identified by Glimmer3; putative YP_003255623.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase YP_003255624.1 identified by Glimmer3; putative YP_003255625.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_003255626.1 penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains YP_003255627.1 identified by Glimmer3; putative YP_003255628.1 identified by Glimmer3; putative YP_003255629.1 identified by Glimmer3; putative YP_003255630.1 identified by Glimmer3; putative YP_003255631.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_003255632.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones YP_003255633.1 identified by Glimmer3; putative YP_003255634.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_003255635.1 identified by Glimmer3; putative YP_003255636.1 identified by Glimmer3; putative YP_003255637.1 identified by Glimmer3; putative YP_003255638.1 identified by Glimmer3; putative YP_003255639.1 identified by Glimmer3; putative YP_003255640.1 identified by Glimmer3; putative YP_003255641.1 identified by Glimmer3; putative YP_003255642.1 identified by Glimmer3; putative YP_003255643.1 identified by Glimmer3; putative YP_003255644.1 identified by Glimmer3; putative YP_003255645.1 identified by Glimmer3; putative YP_003255646.1 involved in molybdenum transport YP_003255647.1 identified by Glimmer3; putative YP_003255648.1 identified by Glimmer3; putative YP_003255649.1 identified by Glimmer3; putative YP_003255650.1 identified by Glimmer3; putative YP_003255651.1 identified by Glimmer3; putative YP_003255652.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization YP_003255653.1 identified by Glimmer3; putative YP_003255654.1 identified by Glimmer3; putative YP_003255655.1 identified by Glimmer3; putative YP_003255656.1 negative regulator of ulaG and ulaABCDEF YP_003255657.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate YP_003255658.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source YP_003255659.1 identified by Glimmer3; putative YP_003255660.1 identified by Glimmer3; putative YP_003255661.1 identified by Glimmer3; putative YP_003255662.1 identified by Glimmer3; putative YP_003255663.1 NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds YP_003255664.1 identified by Glimmer3; putative YP_003255665.1 identified by Glimmer3; putative YP_003255666.1 identified by Glimmer3; putative YP_003255667.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_003255668.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_003255669.1 identified by Glimmer3; putative YP_003255670.1 identified by Glimmer3; putative YP_003255671.1 identified by Glimmer3; putative YP_003255672.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_003255673.1 identified by Glimmer3; putative YP_003255674.1 identified by Glimmer3; putative YP_003255675.1 identified by Glimmer3; putative YP_003255676.1 identified by Glimmer3; putative YP_003255677.1 identified by Glimmer3; putative YP_003255678.1 identified by Glimmer3; putative YP_003255679.1 identified by Glimmer3; putative YP_003255680.1 identified by Glimmer3; putative YP_003255681.1 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction YP_003255682.1 identified by Glimmer3; putative YP_003255683.1 identified by Glimmer3; putative YP_003255684.1 identified by Glimmer3; putative YP_003255685.1 identified by Glimmer3; putative YP_003255686.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_003255687.1 identified by Glimmer3; putative YP_003255688.1 identified by Glimmer3; putative YP_003255689.1 identified by Glimmer3; putative YP_003255690.1 identified by Glimmer3; putative YP_003255691.1 identified by Glimmer3; putative YP_003255692.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_003255693.1 identified by Glimmer3; putative YP_003255694.1 identified by Glimmer3; putative YP_003255695.1 catalyzes the ATP-dependent transport of cobalt YP_003255696.1 identified by Glimmer3; putative YP_003255697.1 identified by Glimmer3; putative YP_003255698.1 GTP hydrolase involved in nickel liganding into hydrogenases YP_003255699.1 identified by Glimmer3; putative YP_003255700.1 identified by Glimmer3; putative YP_003255701.1 identified by Glimmer3; putative YP_003255702.1 catalyzes the conversion of shikimate to 3-dehydroshikimate YP_003255703.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor YP_003255704.1 identified by Glimmer3; putative YP_003255705.1 identified by Glimmer3; putative YP_003255706.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_003255707.1 Part of the ABC transporter complex modABC involved in molybdenum import YP_003255708.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE YP_003255709.1 identified by Glimmer3; putative YP_003255710.1 identified by Glimmer3; putative YP_003255711.1 identified by Glimmer3; putative YP_003255712.1 identified by Glimmer3; putative YP_003255713.1 identified by Glimmer3; putative YP_003255714.1 identified by Glimmer3; putative YP_003255715.1 identified by Glimmer3; putative YP_003255716.1 identified by Glimmer3; putative YP_003255717.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_003255718.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_003255719.1 identified by Glimmer3; putative YP_003255720.1 oxidizes malate to oxaloacetate YP_003255721.1 identified by Glimmer3; putative YP_003255722.1 identified by Glimmer3; putative YP_003255723.1 identified by Glimmer3; putative YP_003255724.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen YP_003255725.1 identified by Glimmer3; putative YP_003255726.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents YP_003255727.1 identified by Glimmer3; putative YP_003255728.1 identified by Glimmer3; putative YP_003255729.1 identified by Glimmer3; putative YP_003255730.1 identified by Glimmer3; putative YP_003255731.1 identified by Glimmer3; putative YP_003255732.1 identified by Glimmer3; putative YP_003255733.1 identified by Glimmer3; putative YP_003255734.1 identified by Glimmer3; putative YP_003255735.1 identified by Glimmer3; putative YP_003255736.1 identified by Glimmer3; putative YP_003255737.1 identified by Glimmer3; putative YP_003255738.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate YP_003255739.1 identified by Glimmer3; putative YP_003255740.1 identified by Glimmer3; putative YP_003255741.1 identified by Glimmer3; putative YP_003255742.1 identified by Glimmer3; putative YP_003255743.1 identified by Glimmer3; putative YP_003255744.1 identified by Glimmer3; putative YP_003255745.1 identified by Glimmer3; putative YP_003255746.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis YP_003255747.1 identified by Glimmer3; putative YP_003255748.1 identified by Glimmer3; putative YP_003255749.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_003255750.1 identified by Glimmer3; putative YP_003255751.1 identified by Glimmer3; putative YP_003255752.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_003255753.1 identified by Glimmer3; putative YP_003255754.1 identified by Glimmer3; putative YP_003255755.1 identified by Glimmer3; putative YP_003255756.1 identified by Glimmer3; putative YP_003255757.1 identified by Glimmer3; putative YP_003255758.1 identified by Glimmer3; putative YP_003255759.1 identified by Glimmer3; putative YP_003255760.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine YP_003255761.1 identified by Glimmer3; putative YP_003255762.1 identified by Glimmer3; putative YP_003255763.1 identified by Glimmer3; putative YP_003255764.1 identified by Glimmer3; putative YP_003255765.1 identified by Glimmer3; putative YP_003255766.1 identified by Glimmer3; putative YP_003255767.1 identified by Glimmer3; putative YP_003255768.1 identified by Glimmer3; putative YP_003255769.1 identified by Glimmer3; putative YP_003255770.1 identified by Glimmer3; putative YP_003255771.1 identified by Glimmer3; putative YP_003255772.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_003255773.1 identified by Glimmer3; putative YP_003255774.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_003255775.1 identified by Glimmer3; putative YP_003255776.1 identified by Glimmer3; putative YP_003255777.1 identified by Glimmer3; putative YP_003255778.1 identified by Glimmer3; putative YP_003255779.1 identified by Glimmer3; putative YP_003255780.1 identified by Glimmer3; putative YP_003255781.1 identified by Glimmer3; putative YP_003255782.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal YP_003255783.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_003255784.1 identified by Glimmer3; putative YP_003255785.1 identified by Glimmer3; putative YP_003255786.1 identified by Glimmer3; putative YP_003255787.1 identified by Glimmer3; putative YP_003255788.1 identified by Glimmer3; putative YP_003255789.1 identified by Glimmer3; putative YP_003255790.1 identified by Glimmer3; putative YP_003255791.1 identified by Glimmer3; putative YP_003255792.1 identified by Glimmer3; putative YP_003255793.1 identified by Glimmer3; putative YP_003255794.1 identified by Glimmer3; putative YP_003255795.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_003255796.1 identified by Glimmer3; putative YP_003255797.1 identified by Glimmer3; putative YP_003255798.1 identified by Glimmer3; putative YP_003255799.1 responsible for the transport of C4-dicarboxylates during anaerobic growth YP_003255800.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_003255801.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_003255802.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_003255803.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_003255804.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_003255805.1 identified by Glimmer3; putative YP_003255806.1 identified by Glimmer3; putative YP_003255807.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_003255808.1 Regulatory factor involved in maltose metabolism YP_003255809.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm YP_003255810.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme YP_003255811.1 identified by Glimmer3; putative YP_003255812.1 identified by Glimmer3; putative YP_003255813.1 identified by Glimmer3; putative YP_003255814.1 identified by Glimmer3; putative YP_003255815.1 identified by Glimmer3; putative YP_003255816.1 identified by Glimmer3; putative YP_003255817.1 identified by Glimmer3; putative YP_003255818.1 identified by Glimmer3; putative YP_003255819.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_003255820.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_003255821.1 identified by Glimmer3; putative YP_003255822.1 identified by Glimmer3; putative YP_003255823.1 involved in the transport of lipid A across the inner membrane YP_003255824.1 identified by Glimmer3; putative YP_003255825.1 identified by Glimmer3; putative YP_003255826.1 identified by Glimmer3; putative YP_003255827.1 identified by Glimmer3; putative YP_003255828.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate YP_003255829.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_003255830.1 identified by Glimmer3; putative YP_003255831.1 identified by Glimmer3; putative YP_003255832.1 identified by Glimmer3; putative YP_003255833.1 amylomaltase; acts to release glucose from maltodextrins YP_003255834.1 identified by Glimmer3; putative YP_003255835.1 Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides YP_003255836.1 with TehA confers resistance to tellurite YP_003255837.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_003255838.1 identified by Glimmer3; putative YP_003255839.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_003255840.1 identified by Glimmer3; putative YP_003255841.1 identified by Glimmer3; putative YP_003255842.1 identified by Glimmer3; putative YP_003255843.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis YP_003255844.1 identified by Glimmer3; putative YP_003255845.1 identified by Glimmer3; putative YP_003255846.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation YP_003255847.1 catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway YP_003255848.1 highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein YP_003255849.1 identified by Glimmer3; putative YP_003255850.1 binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers YP_003255851.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_003255852.1 identified by Glimmer3; putative YP_003255853.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism YP_003255854.1 identified by Glimmer3; putative YP_003255855.1 identified by Glimmer3; putative YP_003255856.1 identified by Glimmer3; putative YP_003255857.1 identified by Glimmer3; putative YP_003255858.1 identified by Glimmer3; putative YP_003255859.1 identified by Glimmer3; putative YP_003255860.1 identified by Glimmer3; putative YP_003255861.1 identified by Glimmer3; putative YP_003255862.1 identified by Glimmer3; putative YP_003255863.1 identified by Glimmer3; putative YP_003255864.1 identified by Glimmer3; putative YP_003255865.1 identified by Glimmer3; putative YP_003255866.1 identified by Glimmer3; putative YP_003255867.1 identified by Glimmer3; putative YP_003255868.1 SohB; periplasmic protein; member of the peptidase S49 family YP_003255869.1 identified by Glimmer3; putative YP_003255870.1 identified by Glimmer3; putative YP_003255871.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003255872.1 might be a pseudogene; identified by Glimmer3; putative YP_003255873.1 identified by Glimmer3; putative YP_003255874.1 identified by Glimmer3; putative YP_003255875.1 identified by Glimmer3; putative YP_003255876.1 identified by Glimmer3; putative YP_003255877.1 identified by Glimmer3; putative YP_003255878.1 identified by Glimmer3; putative YP_003255879.1 identified by Glimmer3; putative YP_003255880.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_003255881.1 identified by Glimmer3; putative YP_003255882.1 identified by Glimmer3; putative YP_003255883.1 identified by Glimmer3; putative YP_003255884.1 identified by Glimmer3; putative YP_003255885.1 identified by Glimmer3; putative YP_003255886.1 identified by Glimmer3; putative YP_003255887.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_003255888.1 identified by Glimmer3; putative YP_003255889.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_003255890.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_003255891.1 identified by Glimmer3; putative YP_003255892.1 identified by Glimmer3; putative YP_003255893.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) YP_003255894.1 identified by Glimmer3; putative YP_003255895.1 identified by Glimmer3; putative YP_003255896.1 identified by Glimmer3; putative YP_003255897.1 identified by Glimmer3; putative YP_003255898.1 identified by Glimmer3; putative YP_003255899.1 identified by Glimmer3; putative YP_003255900.1 identified by Glimmer3; putative YP_003255901.1 identified by Glimmer3; putative YP_003255902.1 identified by Glimmer3; putative YP_003255903.1 identified by Glimmer3; putative YP_003255904.1 identified by Glimmer3; putative YP_003255905.1 identified by Glimmer3; putative YP_003255906.1 identified by Glimmer3; putative YP_003255907.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003255908.1 identified by Glimmer3; putative YP_003255909.1 identified by Glimmer3; putative YP_003255910.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_003255911.1 identified by Glimmer3; putative YP_003255912.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_003255913.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_003255914.1 identified by Glimmer3; putative YP_003255915.1 identified by Glimmer3; putative YP_003255916.1 identified by Glimmer3; putative YP_003255917.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_003255918.1 identified by Glimmer3; putative YP_003255919.1 identified by Glimmer3; putative YP_003255920.1 acts with MukB and MukE to condense the chromosome and allow for segregation during cell division YP_003255921.1 identified by Glimmer3; putative YP_003255922.1 identified by Glimmer3; putative YP_003255923.1 acts with MukB and MukF to condense the chromosome and allow for segregation during cell division YP_003255924.1 SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects YP_003255925.1 identified by Glimmer3; putative YP_003255926.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates YP_003255927.1 identified by Glimmer3; putative YP_003255928.1 identified by Glimmer3; putative YP_003255929.1 identified by Glimmer3; putative YP_003255930.1 identified by Glimmer3; putative YP_003255931.1 identified by Glimmer3; putative YP_003255932.1 identified by Glimmer3; putative YP_003255933.1 identified by Glimmer3; putative YP_003255934.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia YP_003255935.1 with UspC and UspD is involved in resistance to UV irradiation YP_003255936.1 identified by Glimmer3; putative YP_003255937.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_003255938.1 identified by Glimmer3; putative YP_003255939.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_003255940.1 identified by Glimmer3; putative YP_003255941.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_003255942.1 identified by Glimmer3; putative YP_003255943.1 identified by Glimmer3; putative YP_003255944.1 identified by Glimmer3; putative YP_003255945.1 identified by Glimmer3; putative YP_003255946.1 identified by Glimmer3; putative YP_003255947.1 identified by Glimmer3; putative YP_003255948.1 identified by Glimmer3; putative YP_003255949.1 identified by Glimmer3; putative YP_003255950.1 identified by Glimmer3; putative YP_003255951.1 identified by Glimmer3; putative YP_003255952.1 identified by Glimmer3; putative YP_003255953.1 identified by Glimmer3; putative YP_003255954.1 identified by Glimmer3; putative YP_003255955.1 identified by Glimmer3; putative YP_003255956.1 identified by Glimmer3; putative YP_003255957.1 identified by Glimmer3; putative YP_003255958.1 identified by Glimmer3; putative YP_003255959.1 identified by Glimmer3; putative YP_003255960.1 identified by Glimmer3; putative YP_003255961.1 identified by Glimmer3; putative YP_003255962.1 identified by Glimmer3; putative YP_003255963.1 identified by Glimmer3; putative YP_003255964.1 identified by Glimmer3; putative YP_003255965.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_003255966.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_003255967.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_003255968.1 putative metalloprotease YP_003255969.1 identified by Glimmer3; putative YP_003255970.1 identified by Glimmer3; putative YP_003255971.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_003255972.1 identified by Glimmer3; putative YP_003255973.1 identified by Glimmer3; putative YP_003255974.1 identified by Glimmer3; putative YP_003255975.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate YP_003255976.1 identified by Glimmer3; putative YP_003255977.1 identified by Glimmer3; putative YP_003255978.1 identified by Glimmer3; putative YP_003255979.1 identified by Glimmer3; putative YP_003255980.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide YP_003255981.1 catalyzes the formation of pyruvate from oxaloacetate YP_003255982.1 identified by Glimmer3; putative YP_003255983.1 identified by Glimmer3; putative YP_003255984.1 identified by Glimmer3; putative YP_003255985.1 identified by Glimmer3; putative YP_003255986.1 identified by Glimmer3; putative YP_003255987.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_003255988.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_003255989.1 Catalyzes the rate-limiting step in dNTP synthesis YP_003255990.1 identified by Glimmer3; putative YP_003255991.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_003255992.1 identified by Glimmer3; putative YP_003255993.1 identified by Glimmer3; putative YP_003255994.1 identified by Glimmer3; putative YP_003255995.1 identified by Glimmer3; putative YP_003255996.1 identified by Glimmer3; putative YP_003255997.1 identified by Glimmer3; putative YP_003255998.1 identified by Glimmer3; putative YP_003255999.1 identified by Glimmer3; putative YP_003256000.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_003256001.1 identified by Glimmer3; putative YP_003256002.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003256003.1 identified by Glimmer3; putative YP_003256004.1 identified by Glimmer3; putative YP_003256005.1 identified by Glimmer3; putative YP_003256006.1 identified by Glimmer3; putative YP_003256007.1 identified by Glimmer3; putative YP_003256008.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_003256009.1 identified by Glimmer3; putative YP_003256010.1 identified by Glimmer3; putative YP_003256011.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family YP_003256012.1 Required for the synthesis of the thiazole moiety YP_003256013.1 identified by Glimmer3; putative YP_003256014.1 identified by Glimmer3; putative YP_003256015.1 identified by Glimmer3; putative YP_003256016.1 identified by Glimmer3; putative YP_003256017.1 identified by Glimmer3; putative YP_003256018.1 identified by Glimmer3; putative YP_003256019.1 identified by Glimmer3; putative YP_003256020.1 identified by Glimmer3; putative YP_003256021.1 identified by Glimmer3; putative YP_003256022.1 forms a direct contact with the tRNA during translation YP_003256023.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_003256024.1 identified by Glimmer3; putative YP_003256025.1 identified by Glimmer3; putative YP_003256026.1 identified by Glimmer3; putative YP_003256027.1 identified by Glimmer3; putative YP_003256028.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_003256029.1 identified by Glimmer3; putative YP_003256030.1 identified by Glimmer3; putative YP_003256031.1 identified by Glimmer3; putative YP_003256032.1 identified by Glimmer3; putative YP_003256033.1 catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp YP_003256034.1 identified by Glimmer3; putative YP_003256035.1 identified by Glimmer3; putative YP_003256036.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis YP_003256037.1 identified by Glimmer3; putative YP_003256038.1 identified by Glimmer3; putative YP_003256039.1 identified by Glimmer3; putative YP_003256040.1 identified by Glimmer3; putative YP_003256041.1 identified by Glimmer3; putative YP_003256042.1 identified by Glimmer3; putative YP_003256043.1 identified by Glimmer3; putative YP_003256044.1 identified by Glimmer3; putative YP_003256045.1 identified by Glimmer3; putative YP_003256046.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_003256047.1 identified by Glimmer3; putative YP_003256048.1 identified by Glimmer3; putative YP_003256050.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_003256051.1 identified by Glimmer3; putative YP_003256052.1 catalyzes branch migration in Holliday junction intermediates YP_003256053.1 identified by Glimmer3; putative YP_003256054.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_003256055.1 Essential for recycling GMP and indirectly, cGMP YP_003256056.1 identified by Glimmer3; putative YP_003256057.1 identified by Glimmer3; putative YP_003256058.1 identified by Glimmer3; putative YP_003256059.1 identified by Glimmer3; putative YP_003256060.1 identified by Glimmer3; putative YP_003256061.1 identified by Glimmer3; putative YP_003256062.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_003256063.1 identified by Glimmer3; putative YP_003256064.1 identified by Glimmer3; putative YP_003256065.1 identified by Glimmer3; putative YP_003256066.1 identified by Glimmer3; putative YP_003256067.1 identified by Glimmer3; putative YP_003256068.1 identified by Glimmer3; putative YP_003256069.1 identified by Glimmer3; putative YP_003256070.1 identified by Glimmer3; putative YP_003256071.1 identified by Glimmer3; putative YP_003256072.1 identified by Glimmer3; putative YP_003256073.1 identified by Glimmer3; putative YP_003256074.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_003256075.1 identified by Glimmer3; putative YP_003256076.1 identified by Glimmer3; putative YP_003256077.1 identified by Glimmer3; putative YP_003256078.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair YP_003256079.1 identified by Glimmer3; putative YP_003256080.1 identified by Glimmer3; putative YP_003256081.1 identified by Glimmer3; putative YP_003256082.1 identified by Glimmer3; putative YP_003256083.1 identified by Glimmer3; putative YP_003256084.1 identified by Glimmer3; putative YP_003256085.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_003256086.1 identified by Glimmer3; putative YP_003256087.1 identified by Glimmer3; putative YP_003256088.1 identified by Glimmer3; putative YP_003256089.1 identified by Glimmer3; putative YP_003256090.1 identified by Glimmer3; putative YP_003256091.1 identified by Glimmer3; putative YP_003256092.1 multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways YP_003256093.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_003256094.1 identified by Glimmer3; putative YP_003256095.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_003256096.1 identified by Glimmer3; putative YP_003256097.1 identified by Glimmer3; putative YP_003256098.1 identified by Glimmer3; putative YP_003256099.1 identified by Glimmer3; putative YP_003256100.1 identified by Glimmer3; putative YP_003256101.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_003256102.1 identified by Glimmer3; putative YP_003256103.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_003256104.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_003256105.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_003256106.1 identified by Glimmer3; putative YP_003256107.1 identified by Glimmer3; putative YP_003256108.1 identified by Glimmer3; putative YP_003256109.1 identified by Glimmer3; putative YP_003256110.1 identified by Glimmer3; putative YP_003256111.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate YP_003256112.1 identified by Glimmer3; putative YP_003256113.1 identified by Glimmer3; putative YP_003256114.1 identified by Glimmer3; putative YP_003256115.1 putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport YP_003256116.1 identified by Glimmer3; putative YP_003256117.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_003256118.1 synthesizes RNA primers at the replication forks YP_003256119.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_003256120.1 identified by Glimmer3; putative YP_003256121.1 identified by Glimmer3; putative YP_003256122.1 identified by Glimmer3; putative YP_003256123.1 identified by Glimmer3; putative YP_003256124.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_003256125.1 interacts with cell division protein FitsZ and may be required to anchor septal ring structure YP_003256126.1 putative role in sulfur assimilation YP_003256127.1 identified by Glimmer3; putative YP_003256128.1 identified by Glimmer3; putative YP_003256129.1 identified by Glimmer3; putative YP_003256130.1 identified by Glimmer3; putative YP_003256131.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_003256132.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_003256134.1 identified by Glimmer3; putative YP_003256135.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_003256136.1 identified by Glimmer3; putative YP_003256137.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_003256138.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors YP_003256139.1 identified by Glimmer3; putative YP_003256140.1 identified by Glimmer3; putative YP_003256141.1 identified by Glimmer3; putative YP_003256142.1 identified by Glimmer3; putative YP_003256143.1 identified by Glimmer3; putative YP_003256144.1 identified by Glimmer3; putative YP_003256145.1 identified by Glimmer3; putative YP_003256146.1 identified by Glimmer3; putative YP_003256147.1 identified by Glimmer3; putative YP_003256148.1 identified by Glimmer3; putative YP_003256149.1 identified by Glimmer3; putative YP_003256150.1 identified by Glimmer3; putative YP_003256151.1 identified by Glimmer3; putative YP_003256152.1 identified by Glimmer3; putative YP_003256153.1 involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain YP_003256154.1 identified by Glimmer3; putative YP_003256155.1 identified by Glimmer3; putative YP_003256156.1 identified by Glimmer3; putative YP_003256157.1 identified by Glimmer3; putative YP_003256158.1 identified by Glimmer3; putative YP_003256159.1 identified by Glimmer3; putative YP_003256160.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_003256161.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_003256162.1 catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate YP_003256163.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate YP_003256164.1 catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid YP_003256165.1 identified by Glimmer3; putative YP_003256166.1 catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein YP_003256167.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate YP_003256168.1 identified by Glimmer3; putative YP_003256169.1 identified by Glimmer3; putative YP_003256170.1 identified by Glimmer3; putative YP_003256171.1 identified by Glimmer3; putative YP_003256172.1 identified by Glimmer3; putative YP_003256173.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_003256174.1 identified by Glimmer3; putative YP_003256175.1 identified by Glimmer3; putative YP_003256176.1 identified by Glimmer3; putative YP_003256177.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_003256178.1 identified by Glimmer3; putative YP_003256179.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_003256180.1 identified by Glimmer3; putative YP_003256181.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_003256182.1 identified by Glimmer3; putative YP_003256183.1 identified by Glimmer3; putative YP_003256184.1 identified by Glimmer3; putative YP_003256185.1 identified by Glimmer3; putative YP_003256186.1 identified by Glimmer3; putative YP_003256187.1 identified by Glimmer3; putative YP_003256188.1 identified by Glimmer3; putative YP_003256189.1 identified by Glimmer3; putative YP_003256190.1 identified by Glimmer3; putative YP_003256191.1 identified by Glimmer3; putative YP_003256192.1 identified by Glimmer3; putative YP_003256193.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA YP_003256194.1 identified by Glimmer3; putative YP_003256195.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm YP_003256196.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_003256197.1 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS YP_003256198.1 identified by Glimmer3; putative YP_003256199.1 negative modulator of the initiation of chromosome replication YP_003256200.1 identified by Glimmer3; putative YP_003256201.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_003256202.1 identified by Glimmer3; putative YP_003256203.1 negatively supercoils closed circular double-stranded DNA YP_003256204.1 identified by Glimmer3; putative YP_003256205.1 identified by Glimmer3; putative YP_003256206.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_003256207.1 identified by Glimmer3; putative YP_003256208.1 identified by Glimmer3; putative YP_003256209.1 identified by Glimmer3; putative YP_003256210.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_003256211.1 identified by Glimmer3; putative YP_003256212.1 identified by Glimmer3; putative YP_003256213.1 identified by Glimmer3; putative YP_003256214.1 identified by Glimmer3; putative YP_003256215.1 identified by Glimmer3; putative YP_003256216.1 identified by Glimmer3; putative YP_003256217.1 identified by Glimmer3; putative YP_003256218.1 identified by Glimmer3; putative YP_003256219.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_003256220.1 identified by Glimmer3; putative YP_003256221.1 identified by Glimmer3; putative YP_003256222.1 identified by Glimmer3; putative YP_003256223.1 identified by Glimmer3; putative YP_003256224.1 identified by Glimmer3; putative YP_003256225.1 identified by Glimmer3; putative YP_003256226.1 identified by Glimmer3; putative YP_003256227.1 identified by Glimmer3; putative YP_003256228.1 catalyzes the hydrolysis of acylphosphate YP_003256229.1 identified by Glimmer3; putative YP_003256230.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_003256231.1 identified by Glimmer3; putative YP_003256232.1 identified by Glimmer3; putative YP_003256233.1 identified by Glimmer3; putative YP_003256234.1 identified by Glimmer3; putative YP_003256235.1 involved in methylation of ribosomal protein L3 YP_003256236.1 identified by Glimmer3; putative YP_003256237.1 identified by Glimmer3; putative YP_003256238.1 identified by Glimmer3; putative YP_003256239.1 identified by Glimmer3; putative YP_003256240.1 identified by Glimmer3; putative YP_003256241.1 identified by Glimmer3; putative YP_003256242.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth YP_003256243.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_003256244.1 identified by Glimmer3; putative YP_003256245.1 identified by Glimmer3; putative YP_003256246.1 identified by Glimmer3; putative YP_003256247.1 identified by Glimmer3; putative YP_003256248.1 identified by Glimmer3; putative YP_003256249.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose YP_003256250.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_003256251.1 identified by Glimmer3; putative YP_003256252.1 identified by Glimmer3; putative YP_003256253.1 identified by Glimmer3; putative YP_003256254.1 identified by Glimmer3; putative YP_003256255.1 identified by Glimmer3; putative YP_003256256.1 identified by Glimmer3; putative YP_003256257.1 identified by Glimmer3; putative YP_003256258.1 identified by Glimmer3; putative YP_003256259.1 identified by Glimmer3; putative YP_003256260.1 Activates fatty acids by binding to coenzyme A YP_003256261.1 identified by Glimmer3; putative YP_003256262.1 identified by Glimmer3; putative YP_003256263.1 identified by Glimmer3; putative YP_003256264.1 identified by Glimmer3; putative YP_003256265.1 identified by Glimmer3; putative YP_003256266.1 identified by Glimmer3; putative YP_003256267.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c YP_003256268.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c YP_003256269.1 identified by Glimmer3; putative YP_003256270.1 identified by Glimmer3; putative YP_003256271.1 identified by Glimmer3; putative YP_003256272.1 identified by Glimmer3; putative YP_003256273.1 catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine YP_003256274.1 identified by Glimmer3; putative YP_003256275.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate YP_003256276.1 identified by Glimmer3; putative YP_003256277.1 identified by Glimmer3; putative YP_003256278.1 identified by Glimmer3; putative YP_003256279.1 identified by Glimmer3; putative YP_003256280.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction YP_003256281.1 identified by Glimmer3; putative YP_003256282.1 identified by Glimmer3; putative YP_003256283.1 identified by Glimmer3; putative YP_003256284.1 identified by Glimmer3; putative YP_003256285.1 identified by Glimmer3; putative YP_003256286.1 identified by Glimmer3; putative YP_003256287.1 identified by Glimmer3; putative YP_003256288.1 identified by Glimmer3; putative YP_003256289.1 identified by Glimmer3; putative YP_003256290.1 identified by Glimmer3; putative YP_003256291.1 identified by Glimmer3; putative YP_003256292.1 identified by Glimmer3; putative YP_003256293.1 identified by Glimmer3; putative YP_003256294.1 identified by Glimmer3; putative YP_003256295.1 identified by Glimmer3; putative YP_003256296.1 identified by Glimmer3; putative YP_003256297.1 identified by Glimmer3; putative YP_003256298.1 identified by Glimmer3; putative YP_003256299.1 identified by Glimmer3; putative YP_003256300.1 identified by Glimmer3; putative YP_003256301.1 identified by Glimmer3; putative YP_003256302.1 identified by Glimmer3; putative YP_003256303.1 identified by Glimmer3; putative YP_003256304.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA YP_003256305.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair. YP_003256306.1 identified by Glimmer3; putative YP_003256307.1 identified by Glimmer3; putative YP_003256308.1 identified by Glimmer3; putative YP_003256309.1 identified by Glimmer3; putative YP_003256310.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth YP_003256311.1 identified by Glimmer3; putative YP_003256312.1 identified by Glimmer3; putative YP_003256313.1 identified by Glimmer3; putative YP_003256314.1 identified by Glimmer3; putative YP_003256315.1 identified by Glimmer3; putative YP_003256316.1 identified by Glimmer3; putative YP_003256317.1 identified by Glimmer3; putative YP_003256318.1 identified by Glimmer3; putative YP_003256319.1 identified by Glimmer3; putative YP_003256320.1 identified by Glimmer3; putative YP_003256321.1 identified by Glimmer3; putative YP_003256322.1 identified by Glimmer3; putative YP_003256323.1 interacts with formate dehydrogenase to produce an active formate hydrogenlyase complex which cleaves formate to dihydrogen and carbon dioxide YP_003256324.1 identified by Glimmer3; putative YP_003256325.1 identified by Glimmer3; putative YP_003256326.1 identified by Glimmer3; putative YP_003256327.1 identified by Glimmer3; putative YP_003256328.1 identified by Glimmer3; putative YP_003256329.1 involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE YP_003256330.1 identified by Glimmer3; putative YP_003256331.1 identified by Glimmer3; putative YP_003256332.1 identified by Glimmer3; putative YP_003256333.1 catalyzes the interconversion of succinyl-CoA and succinate YP_003256334.1 identified by Glimmer3; putative YP_003256335.1 identified by Glimmer3; putative YP_003256336.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_003256337.1 identified by Glimmer3; putative YP_003256338.1 identified by Glimmer3; putative YP_003256339.1 identified by Glimmer3; putative YP_003256340.1 identified by Glimmer3; putative YP_003256341.1 Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 YP_003256342.1 affects solute and DNA transport through an unknown mechanism YP_003256343.1 identified by Glimmer3; putative YP_003256344.1 identified by Glimmer3; putative YP_003256345.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_003256346.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase YP_003256347.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component YP_003256348.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component YP_003256349.1 identified by Glimmer3; putative YP_003256350.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_003256351.1 identified by Glimmer3; putative YP_003256352.1 identified by Glimmer3; putative YP_003256353.1 identified by Glimmer3; putative YP_003256354.1 identified by Glimmer3; putative YP_003256355.1 participates with LolB in the incorporation of lipoprotein into the outer membrane YP_003256356.1 identified by Glimmer3; putative YP_003256357.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system YP_003256358.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_003256359.1 identified by Glimmer3; putative YP_003256360.1 identified by Glimmer3; putative YP_003256361.1 identified by Glimmer3; putative YP_003256362.1 identified by Glimmer3; putative YP_003256363.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases YP_003256364.1 Incorporates lipoproteins in the outer membrane after they are released by the LolA protein YP_003256365.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_003256366.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_003256367.1 identified by Glimmer3; putative YP_003256368.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration YP_003256369.1 identified by Glimmer3; putative YP_003256370.1 identified by Glimmer3; putative YP_003256371.1 identified by Glimmer3; putative YP_003256372.1 identified by Glimmer3; putative YP_003256373.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_003256374.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_003256375.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_003256376.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_003256377.1 3'-5' exonuclease of DNA polymerase III YP_003256378.1 identified by Glimmer3; putative YP_003256379.1 identified by Glimmer3; putative YP_003256380.1 identified by Glimmer3; putative YP_003256381.1 identified by Glimmer3; putative YP_003256382.1 identified by Glimmer3; putative YP_003256383.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_003256384.1 identified by Glimmer3; putative YP_003256385.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_003256386.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_003256387.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_003256388.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_003256389.1 identified by Glimmer3; putative YP_003256390.1 identified by Glimmer3; putative YP_003256391.1 identified by Glimmer3; putative YP_003256392.1 identified by Glimmer3; putative YP_003256393.1 identified by Glimmer3; putative YP_003256394.1 Acts as a repressor of the mtlAD operon YP_003256395.1 identified by Glimmer3; putative YP_003256396.1 identified by Glimmer3; putative YP_003256397.1 identified by Glimmer3; putative YP_003256398.1 identified by Glimmer3; putative YP_003256399.1 identified by Glimmer3; putative YP_003256400.1 identified by Glimmer3; putative YP_003256401.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_003256402.1 identified by Glimmer3; putative YP_003256403.1 identified by Glimmer3; putative YP_003256404.1 identified by Glimmer3; putative YP_003256405.1 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit YP_003256406.1 with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_003256407.1 alanine acetyltransferase that specifically acetylates ribosomal protein S18 YP_003256408.1 identified by Glimmer3; putative YP_003256409.1 identified by Glimmer3; putative YP_003256410.1 identified by Glimmer3; putative YP_003256411.1 identified by Glimmer3; putative YP_003256412.1 identified by Glimmer3; putative YP_003256413.1 identified by Glimmer3; putative YP_003256414.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_003256415.1 inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins YP_003256416.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins YP_003256417.1 identified by Glimmer3; putative YP_003256418.1 identified by Glimmer3; putative YP_003256419.1 identified by Glimmer3; putative YP_003256420.1 identified by Glimmer3; putative YP_003256421.1 identified by Glimmer3; putative YP_003256422.1 identified by Glimmer3; putative YP_003256423.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_003256424.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_003256425.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_003256426.1 identified by Glimmer3; putative YP_003256427.1 identified by Glimmer3; putative YP_003256428.1 converts dATP to dAMP and pyrophosphate YP_003256429.1 identified by Glimmer3; putative YP_003256430.1 identified by Glimmer3; putative YP_003256431.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_003256432.1 identified by Glimmer3; putative YP_003256433.1 identified by Glimmer3; putative YP_003256434.1 identified by Glimmer3; putative YP_003256435.1 identified by Glimmer3; putative YP_003256436.1 identified by Glimmer3; putative YP_003256437.1 identified by Glimmer3; putative YP_003256438.1 identified by Glimmer3; putative YP_003256439.1 identified by Glimmer3; putative YP_003256440.1 identified by Glimmer3; putative YP_003256441.1 identified by Glimmer3; putative YP_003256442.1 identified by Glimmer3; putative YP_003256443.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A) YP_003256444.1 identified by Glimmer3; putative YP_003256445.1 identified by Glimmer3; putative YP_003256446.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_003256447.1 identified by Glimmer3; putative YP_003256448.1 identified by Glimmer3; putative YP_003256449.1 identified by Glimmer3; putative YP_003256450.1 identified by Glimmer3; putative YP_003256451.1 identified by Glimmer3; putative YP_003256452.1 involved in the peptidyltransferase reaction during translation YP_003256453.1 identified by Glimmer3; putative YP_003256454.1 identified by Glimmer3; putative YP_003256455.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_003256456.1 identified by Glimmer3; putative YP_003256457.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_003256458.1 identified by Glimmer3; putative YP_003256459.1 identified by Glimmer3; putative YP_003256460.1 identified by Glimmer3; putative YP_003256461.1 identified by Glimmer3; putative YP_003256462.1 identified by Glimmer3; putative YP_003256463.1 identified by Glimmer3; putative YP_003256464.1 identified by Glimmer3; putative YP_003256465.1 identified by Glimmer3; putative YP_003256466.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_003256467.1 identified by Glimmer3; putative YP_003256468.1 identified by Glimmer3; putative YP_003256469.1 identified by Glimmer3; putative YP_003256470.1 identified by Glimmer3; putative YP_003256471.1 identified by Glimmer3; putative YP_003256472.1 identified by Glimmer3; putative YP_003256473.1 catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA YP_003256474.1 identified by Glimmer3; putative YP_003256475.1 identified by Glimmer3; putative YP_003256476.1 catalyzes the formation of cysteine from cystathionine; in B. subtilis also has O-acetylhomoserine thiolyase activity YP_003256477.1 identified by Glimmer3; putative YP_003256478.1 identified by Glimmer3; putative YP_003256479.1 identified by Glimmer3; putative YP_003256480.1 identified by Glimmer3; putative YP_003256481.1 identified by Glimmer3; putative YP_003256482.1 identified by Glimmer3; putative YP_003256483.1 identified by Glimmer3; putative YP_003256484.1 identified by Glimmer3; putative YP_003256485.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_003256486.1 identified by Glimmer3; putative YP_003256487.1 membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues YP_003256488.1 identified by Glimmer3; putative YP_003256489.1 identified by Glimmer3; putative YP_003256490.1 identified by Glimmer3; putative YP_003256491.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_003256492.1 catalyzes the formation of serine from O-phosphoserine YP_003256493.1 identified by Glimmer3; putative YP_003256494.1 identified by Glimmer3; putative YP_003256495.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_003256496.1 identified by Glimmer3; putative YP_003256497.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_003256498.1 identified by Glimmer3; putative YP_003256499.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_003256500.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_003256501.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_003256502.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_003256503.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_003256504.1 putative transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters YP_003256505.1 identified by Glimmer3; putative YP_003256506.1 identified by Glimmer3; putative YP_003256507.1 Required for efficient pilin antigenic variation YP_003256508.1 identified by Glimmer3; putative YP_003256509.1 identified by Glimmer3; putative YP_003256510.1 identified by Glimmer3; putative YP_003256511.1 identified by Glimmer3; putative YP_003256512.1 identified by Glimmer3; putative YP_003256513.1 catalyzes the formation of phenol and pyruvate from tyrosine YP_003256514.1 identified by Glimmer3; putative YP_003256515.1 identified by Glimmer3; putative YP_003256516.1 identified by Glimmer3; putative YP_003256517.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine YP_003256518.1 identified by Glimmer3; putative YP_003256519.1 identified by Glimmer3; putative YP_003256520.1 identified by Glimmer3; putative YP_003256521.1 identified by Glimmer3; putative YP_003256522.1 identified by Glimmer3; putative YP_003256523.1 identified by Glimmer3; putative YP_003256524.1 identified by Glimmer3; putative YP_003256525.1 identified by Glimmer3; putative YP_003256526.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides YP_003256527.1 identified by Glimmer3; putative YP_003256528.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA YP_003256529.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_003256530.1 identified by Glimmer3; putative YP_003256531.1 identified by Glimmer3; putative YP_003256532.1 identified by Glimmer3; putative YP_003256533.1 identified by Glimmer3; putative YP_003256534.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit YP_003256535.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_003256536.1 identified by Glimmer3; putative YP_003256537.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_003256538.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_003256539.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_003256540.1 functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria YP_003256541.1 identified by Glimmer3; putative YP_003256542.1 identified by Glimmer3; putative YP_003256543.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_003256544.1 identified by Glimmer3; putative YP_003256545.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_003256546.1 binds the polymerase to DNA and acts as a sliding clamp YP_003256547.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_003256548.1 identified by Glimmer3; putative YP_003256549.1 identified by Glimmer3; putative YP_003256550.1 identified by Glimmer3; putative YP_003256551.1 identified by Glimmer3; putative YP_003256552.1 identified by Glimmer3; putative YP_003256553.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_003256554.1 identified by Glimmer3; putative YP_003256555.1 identified by Glimmer3; putative YP_003256556.1 identified by Glimmer3; putative YP_003256557.1 identified by Glimmer3; putative YP_003256558.1 identified by Glimmer3; putative YP_003256559.1 identified by Glimmer3; putative YP_003256560.1 identified by Glimmer3; putative YP_003256561.1 part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia YP_003256562.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552 YP_003256563.1 identified by Glimmer3; putative YP_003256564.1 identified by Glimmer3; putative YP_003256565.1 identified by Glimmer3; putative YP_003256566.1 identified by Glimmer3; putative YP_003256567.1 identified by Glimmer3; putative YP_003256568.1 identified by Glimmer3; putative YP_003256569.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane YP_003256570.1 identified by Glimmer3; putative YP_003256571.1 identified by Glimmer3; putative YP_003256572.1 identified by Glimmer3; putative YP_003256573.1 ATP-binding protein; required for proper cytochrome c maturation YP_003256574.1 identified by Glimmer3; putative YP_003256575.1 identified by Glimmer3; putative YP_003256576.1 identified by Glimmer3; putative YP_003256577.1 identified by Glimmer3; putative YP_003256578.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_003256579.1 identified by Glimmer3; putative YP_003256580.1 identified by Glimmer3; putative YP_003256581.1 identified by Glimmer3; putative YP_003256582.1 identified by Glimmer3; putative YP_003256583.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_003256584.1 identified by Glimmer3; putative YP_003256585.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function YP_003256586.1 identified by Glimmer3; putative YP_003256587.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein YP_003256588.1 involved in regulation of intracellular pH under alkaline conditions YP_003256589.1 Multifunctional regulator of fatty acid metabolism YP_003256590.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_003256591.1 identified by Glimmer3; putative YP_003256592.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis YP_003256593.1 catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA YP_003256594.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_003256595.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_003256596.1 identified by Glimmer3; putative YP_003256597.1 identified by Glimmer3; putative YP_003256598.1 identified by Glimmer3; putative YP_003256599.1 catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis YP_003256600.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_003256601.1 identified by Glimmer3; putative YP_003256602.1 identified by Glimmer3; putative YP_003256603.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_003256604.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_003256605.1 identified by Glimmer3; putative YP_003256606.1 identified by Glimmer3; putative YP_003256607.1 identified by Glimmer3; putative YP_003256608.1 identified by Glimmer3; putative YP_003256609.1 identified by Glimmer3; putative YP_003256610.1 identified by Glimmer3; putative YP_003256611.1 identified by Glimmer3; putative YP_003256612.1 Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine YP_003256613.1 identified by Glimmer3; putative YP_003256614.1 identified by Glimmer3; putative YP_003256615.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_003256616.1 binds and unfolds substrates as part of the ClpXP protease YP_003256617.1 identified by Glimmer3; putative YP_003256618.1 identified by Glimmer3; putative YP_003256619.1 identified by Glimmer3; putative YP_003256620.1 identified by Glimmer3; putative YP_003256621.1 identified by Glimmer3; putative YP_003256622.1 identified by Glimmer3; putative YP_003256623.1 identified by Glimmer3; putative YP_003256624.1 identified by Glimmer3; putative YP_003256625.1 identified by Glimmer3; putative YP_003256626.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_003256627.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_003256628.1 identified by Glimmer3; putative YP_003256629.1 identified by Glimmer3; putative YP_003256630.1 identified by Glimmer3; putative YP_003256631.1 identified by Glimmer3; putative YP_003256632.1 identified by Glimmer3; putative YP_003256633.1 identified by Glimmer3; putative YP_003256634.1 identified by Glimmer3; putative YP_003256635.1 identified by Glimmer3; putative YP_003256636.1 identified by Glimmer3; putative YP_003256637.1 identified by Glimmer3; putative YP_003256638.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing YP_003256639.1 identified by Glimmer3; putative YP_003256640.1 identified by Glimmer3; putative YP_003256641.1 identified by Glimmer3; putative YP_003256642.1 identified by Glimmer3; putative YP_003256643.1 identified by Glimmer3; putative YP_003256644.1 identified by Glimmer3; putative YP_003256645.1 identified by Glimmer3; putative YP_003256646.1 identified by Glimmer3; putative YP_003256647.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_003256648.1 identified by Glimmer3; putative YP_003256649.1 identified by Glimmer3; putative YP_003256650.1 identified by Glimmer3; putative YP_003256651.1 identified by Glimmer3; putative YP_003256652.1 identified by Glimmer3; putative YP_003256653.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription YP_003256654.1 identified by Glimmer3; putative YP_003256655.1 identified by Glimmer3; putative YP_003256656.1 identified by Glimmer3; putative YP_003256657.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase YP_003256658.1 identified by Glimmer3; putative YP_003256659.1 identified by Glimmer3; putative YP_003256660.1 identified by Glimmer3; putative YP_003256661.1 identified by Glimmer3; putative YP_003256662.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_003256663.1 identified by Glimmer3; putative YP_003256664.1 identified by Glimmer3; putative YP_003256665.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_003256666.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate YP_003256667.1 identified by Glimmer3; putative YP_003256668.1 identified by Glimmer3; putative; similar to HI0074 YP_003256669.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA YP_003256670.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_003256671.1 identified by Glimmer3; putative YP_003256672.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_003256673.1 identified by Glimmer3; putative YP_003256674.1 identified by Glimmer3; putative protein in HemN 3'region YP_003256675.1 identified by Glimmer3; putative YP_003256676.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_003256677.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_003256678.1 identified by Glimmer3; putative YP_003256679.1 identified by Glimmer3; putative YP_003256680.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source YP_003256681.1 with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain YP_003256682.1 functions to transport ribose at high affinity; forms a complex with RbsA2C2B YP_003256683.1 periplasmic substrate-binding component of the ATP-dependent ribose transport system YP_003256684.1 identified by Glimmer3; putative YP_003256685.1 identified by Glimmer3; putative YP_003256686.1 identified by Glimmer3; putative YP_003256687.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_003256688.1 identified by Glimmer3; putative YP_003256689.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_003256690.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_003256691.1 identified by Glimmer3; putative YP_003256692.1 identified by Glimmer3; putative YP_003256693.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_003256694.1 identified by Glimmer3; putative YP_003256695.1 identified by Glimmer3; putative YP_003256696.1 identified by Glimmer3; putative YP_003256697.1 identified by Glimmer3; putative YP_003256698.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_003256699.1 identified by Glimmer3; putative YP_003256700.1 identified by Glimmer3; putative YP_003256701.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions YP_003256702.1 identified by Glimmer3; putative YP_003256703.1 identified by Glimmer3; putative YP_003256704.1 identified by Glimmer3; putative YP_003256705.1 identified by Glimmer3; putative YP_003256706.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_003256707.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_003256708.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein YP_003256709.1 identified by Glimmer3; putative YP_003256710.1 identified by Glimmer3; putative YP_003256711.1 identified by Glimmer3; putative YP_003256712.1 identified by Glimmer3; putative YP_003256713.1 identified by Glimmer3; putative YP_003256714.1 identified by Glimmer3; putative YP_003256715.1 identified by Glimmer3; putative YP_003256716.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation YP_003256717.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_003256718.1 identified by Glimmer3; putative YP_003256719.1 identified by Glimmer3; putative YP_003256720.1 carries the fatty acid chain in fatty acid biosynthesis YP_003256721.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_003256722.1 identified by Glimmer3; putative YP_003256723.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_003256724.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_003256725.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_003256726.1 identified by Glimmer3; putative YP_003256727.1 identified by Glimmer3; putative YP_003256728.1 identified by Glimmer3; putative YP_003256729.1 identified by Glimmer3; putative YP_003256730.1 identified by Glimmer3; putative YP_003256731.1 identified by Glimmer3; putative YP_003256732.1 identified by Glimmer3; putative YP_003256733.1 identified by Glimmer3; putative YP_003256734.1 identified by Glimmer3; putative YP_003256735.1 identified by Glimmer3; putative YP_003256736.1 identified by Glimmer3; putative YP_003256737.1 identified by Glimmer3; putative YP_003256738.1 identified by Glimmer3; putative YP_003256739.1 identified by Glimmer3; putative YP_003256740.1 identified by Glimmer3; putative YP_003256741.1 identified by Glimmer3; putative YP_003256742.1 identified by Glimmer3; putative YP_003256743.1 identified by Glimmer3; putative YP_003256744.1 identified by Glimmer3; putative YP_003256745.1 identified by Glimmer3; putative YP_003256746.1 identified by Glimmer3; putative YP_003256747.1 identified by Glimmer3; putative YP_003256748.1 identified by Glimmer3; putative YP_003256749.1 identified by Glimmer3; putative YP_003256750.1 identified by Glimmer3; putative YP_003256751.1 identified by Glimmer3; putative YP_003256752.1 identified by Glimmer3; putative YP_003256753.1 identified by Glimmer3; putative YP_003256754.1 identified by Glimmer3; putative YP_003256755.1 identified by Glimmer3; putative YP_003256756.1 identified by Glimmer3; putative YP_003256757.1 identified by Glimmer3; putative YP_003256758.1 identified by Glimmer3; putative YP_003256759.1 identified by Glimmer3; putative YP_003256760.1 identified by Glimmer3; putative YP_003256761.1 identified by Glimmer3; putative YP_003256762.1 identified by Glimmer3; putative YP_003256763.1 identified by Glimmer3; putative YP_003256764.1 identified by Glimmer3; putative YP_003256765.1 identified by Glimmer3; putative YP_003256766.1 identified by Glimmer3; putative YP_003256767.1 identified by Glimmer3; putative YP_003256768.1 identified by Glimmer3; putative YP_003256769.1 identified by Glimmer3; putative YP_003256770.1 identified by Glimmer3; putative YP_003256771.1 identified by Glimmer3; putative YP_003256772.1 identified by Glimmer3; putative YP_003256773.1 identified by Glimmer3; putative YP_003256774.1 identified by Glimmer3; putative YP_003256775.1 identified by Glimmer3; putative YP_003256776.1 identified by Glimmer3; putative YP_003256777.1 identified by Glimmer3; putative YP_003264481.1 identified by Glimmer3; putative YP_003264482.1 identified by Glimmer3; putative YP_003264483.1 identified by Glimmer3; putative YP_003264484.1 identified by Glimmer3; putative YP_003264485.1 identified by Glimmer3; putative YP_003264486.1 identified by Glimmer3; putative YP_003264487.1 identified by Glimmer3; putative YP_003264488.1 identified by Glimmer3; putative YP_003264489.1 identified by Glimmer3; putative YP_003264490.1 identified by Glimmer3; putative YP_003264491.1 identified by Glimmer3; putative YP_003264492.1 identified by Glimmer3; putative YP_003264493.1 identified by Glimmer3; putative YP_003264494.1 identified by Glimmer3; putative YP_003264495.1 identified by Glimmer3; putative YP_003264496.1 identified by Glimmer3; putative YP_003264497.1 identified by Glimmer3; putative YP_003264498.1 identified by Glimmer3; putative YP_003264499.1 identified by Glimmer3; putative YP_003264500.1 identified by Glimmer3; putative YP_003264501.1 identified by Glimmer3; putative YP_003264502.1 identified by Glimmer3; putative YP_003264503.1 identified by Glimmer3; putative YP_003264504.1 identified by Glimmer3; putative YP_003264505.1 identified by Glimmer3; putative YP_003264506.1 identified by Glimmer3; putative YP_003264507.1 identified by Glimmer3; putative YP_003264508.1 identified by Glimmer3; putative YP_003264509.1 identified by Glimmer3; putative YP_003264510.1 identified by Glimmer3; putative YP_003264511.1 identified by Glimmer3; putative YP_003264512.1 identified by Glimmer3; putative YP_003264513.1 identified by Glimmer3; putative YP_003264514.1 identified by Glimmer3; putative YP_003264515.1 identified by Glimmer3; putative YP_003264516.1 identified by Glimmer3; putative YP_003264517.1 identified by Glimmer3; putative YP_003264518.1 identified by Glimmer3; putative YP_003264519.1 identified by Glimmer3; putative YP_003264520.1 identified by Glimmer3; putative YP_003264521.1 identified by Glimmer3; putative YP_003264522.1 identified by Glimmer3; putative YP_003264523.1 identified by Glimmer3; putative YP_003344781.1 identified by Glimmer3; putative YP_003344782.1 identified by Glimmer3; putative YP_003344783.1 identified by Glimmer3; putative YP_003344784.1 identified by Glimmer3; putative YP_003344785.1 identified by Glimmer3; putative YP_003344786.1 identified by Glimmer3; putative YP_003344787.1 identified by Glimmer3; putative YP_003344788.1 identified by Glimmer3; putative YP_003344789.1 identified by Glimmer3; putative YP_003344790.1 identified by Glimmer3; putative YP_003344791.1 identified by Glimmer3; putative YP_003344792.1 identified by Glimmer3; putative YP_003344793.1 identified by Glimmer3; putative YP_003344794.1 identified by Glimmer3; putative YP_003344795.1 identified by Glimmer3; putative YP_003344796.1 identified by Glimmer3; putative YP_003344797.1 identified by Glimmer3; putative YP_003344798.1 identified by Glimmer3; putative YP_003344799.1 identified by Glimmer3; putative YP_003344800.1 identified by Glimmer3; putative YP_003344801.1 identified by Glimmer3; putative YP_003344802.1 identified by Glimmer3; putative YP_003344803.1 identified by Glimmer3; putative YP_003344804.1 identified by Glimmer3; putative YP_003344805.1 identified by Glimmer3; putative YP_003344806.1 identified by Glimmer3; putative YP_003344807.1 identified by Glimmer3; putative YP_003344808.1 identified by Glimmer3; putative YP_003344809.1 identified by Glimmer3; putative YP_003344810.1 identified by Glimmer3; putative YP_003344811.1 identified by Glimmer3; putative YP_003344812.1 identified by Glimmer3; putative YP_003344813.1 identified by Glimmer3; putative YP_003344814.1 identified by Glimmer3; putative YP_003344815.1 identified by Glimmer3; putative YP_003344816.1 identified by Glimmer3; putative YP_003344817.1 identified by Glimmer3; putative YP_003344818.1 identified by Glimmer3; putative YP_003344819.1 identified by Glimmer3; putative YP_003344820.1 identified by Glimmer3; putative YP_003344821.1 identified by Glimmer3; putative YP_003344822.1 identified by Glimmer3; putative YP_003344823.1 identified by Glimmer3; putative YP_003344824.1 identified by Glimmer3; putative YP_003344825.1 identified by Glimmer3; putative YP_003344826.1 identified by Glimmer3; putative YP_003344827.1 COG3646; identified by Glimmer3; putative YP_003344828.1 identified by Glimmer3; putative YP_003344829.1 identified by Glimmer3; putative YP_003344830.1 identified by Glimmer3; putative YP_003344831.1 identified by Glimmer3; putative YP_003344832.1 identified by Glimmer3; putative YP_003344833.1 identified by Glimmer3; putative YP_003344834.1 identified by Glimmer3; putative YP_003344835.1 identified by Glimmer3; putative YP_003344836.1 identified by Glimmer3; putative YP_003344837.1 identified by Glimmer3; putative YP_003344838.1 identified by Glimmer3; putative YP_003344839.1 identified by Glimmer3; putative YP_003344840.1 identified by Glimmer3; putative YP_003344841.1 identified by Glimmer3; putative YP_003344842.1 identified by Glimmer3; putative YP_003344843.1 identified by Glimmer3; putative YP_003344844.1 identified by Glimmer3; putative YP_003344845.1 identified by Glimmer3; putative YP_003344846.1 identified by Glimmer3; putative YP_003966090.1 identified by Glimmer3; putative YP_003966091.1 identified by Glimmer3; putative YP_003966092.1 identified by Glimmer3; putative YP_003966093.1 identified by Glimmer3; putative YP_003966094.1 identified by Glimmer3; putative YP_003966095.1 identified by Glimmer3; putative YP_003966096.1 identified by Glimmer3; putative YP_003966097.1 identified by Glimmer3; putative YP_003966098.1 identified by Glimmer3; putative YP_003966099.1 identified by Glimmer3; putative YP_003966100.1 identified by Glimmer3; putative YP_003966101.1 identified by Glimmer3; putative YP_003966102.1 identified by Glimmer3; putative YP_003966104.1 identified by Glimmer3; putative YP_003966105.1 identified by Glimmer3; putative YP_003966106.1 identified by Glimmer3; putative YP_003966107.1 identified by Glimmer3; putative YP_003966108.1 identified by Glimmer3; putative YP_003966109.1 identified by Glimmer3; putative YP_003966110.1 identified by Glimmer3; putative YP_003966111.1 identified by Glimmer3; putative YP_003966112.1 identified by Glimmer3; putative YP_003966113.1 identified by Glimmer3; putative YP_003966114.1 identified by Glimmer3; putative YP_003966115.1 identified by Glimmer3; putative YP_003966116.1 identified by Glimmer3; putative YP_003966117.1 identified by Glimmer3; putative YP_003966118.1 identified by Glimmer3; putative YP_003966119.1 identified by Glimmer3; putative YP_003966120.1 identified by Glimmer3; putative YP_003966121.1 identified by Glimmer3; putative YP_003966122.1 identified by Glimmer3; putative YP_003966123.1 identified by Glimmer3; putative YP_003966124.1 identified by Glimmer3; putative YP_003966125.1 identified by Glimmer3; putative YP_003966126.1 identified by Glimmer3; putative YP_003966127.1 identified by Glimmer3; putative YP_003966128.1 identified by Glimmer3; putative YP_003966129.1 identified by Glimmer3; putative YP_003966130.1 identified by Glimmer3; putative YP_003966131.1 identified by Glimmer3; putative