-- dump date 20140618_192555 -- class Genbank::CDS -- table cds_note -- id note YP_003006537.1 identified by Glimmer3; putative YP_003006538.1 identified by Glimmer3; putative YP_003006539.1 identified by Glimmer3; putative YP_003006540.1 catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis YP_003006541.1 identified by Glimmer3; putative YP_003006542.1 identified by Glimmer3; putative YP_003006543.1 identified by Glimmer3; putative YP_003006544.1 identified by Glimmer3; putative YP_003006545.1 identified by Glimmer3; putative YP_003006546.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_003006547.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_003006548.1 identified by Glimmer3; putative YP_003006549.1 identified by Glimmer3; putative YP_003006550.1 identified by Glimmer3; putative YP_003006551.1 identified by Glimmer3; putative YP_003006552.1 identified by Glimmer3; putative YP_003006553.1 identified by Glimmer3; putative YP_003006554.1 identified by Glimmer3; putative YP_003006555.1 putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport YP_003006556.1 catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate YP_003006557.1 identified by Glimmer3; putative YP_003006558.1 NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_003006559.1 identified by Glimmer3; putative; (16Spseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A) YP_003006560.1 identified by Glimmer3; putative YP_003006561.1 ATP-binding protein; required for proper cytochrome c maturation YP_003006562.1 identified by Glimmer3; putative YP_003006563.1 identified by Glimmer3; putative YP_003006564.1 identified by Glimmer3; putative YP_003006565.1 CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane YP_003006566.1 identified by Glimmer3; putative YP_003006567.1 identified by Glimmer3; putative YP_003006568.1 identified by Glimmer3; putative YP_003006569.1 identified by Glimmer3; putative YP_003006570.1 identified by Glimmer3; putative YP_003006571.1 identified by Glimmer3; putative YP_003006572.1 catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552 YP_003006573.1 part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia YP_003006574.1 identified by Glimmer3; putative YP_003006575.1 identified by Glimmer3; putative YP_003006576.1 identified by Glimmer3; putative YP_003006577.1 identified by Glimmer3; putative YP_003006578.1 identified by Glimmer3; putative YP_003006579.1 identified by Glimmer3; putative YP_003006580.1 identified by Glimmer3; putative YP_003006581.1 identified by Glimmer3; putative YP_003006582.1 identified by Glimmer3; putative YP_003006583.1 identified by Glimmer3; putative YP_003006584.1 identified by Glimmer3; putative YP_003006585.1 identified by Glimmer3; putative YP_003006586.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_003006587.1 binds the polymerase to DNA and acts as a sliding clamp YP_003006588.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_003006589.1 identified by Glimmer3; putative YP_003006590.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_003006591.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_003006592.1 identified by Glimmer3; putative YP_003006593.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_003006594.1 activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions YP_003006595.1 identified by Glimmer3; putative; (Class III anaerobic ribonucleotide reductase smallcomponent) YP_003006596.1 identified by Glimmer3; putative YP_003006597.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_003006598.1 identified by Glimmer3; putative YP_003006599.1 identified by Glimmer3; putative YP_003006600.1 identified by Glimmer3; putative YP_003006601.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase YP_003006602.1 identified by Glimmer3; putative YP_003006603.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_003006604.1 identified by Glimmer3; putative YP_003006605.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_003006606.1 identified by Glimmer3; putative YP_003006607.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_003006608.1 identified by Glimmer3; putative YP_003006609.1 identified by Glimmer3; putative YP_003006610.1 identified by Glimmer3; putative YP_003006611.1 identified by Glimmer3; putative YP_003006612.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_003006613.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_003006614.1 identified by Glimmer3; putative YP_003006615.1 orf2; identified by Glimmer3; putative YP_003006616.1 identified by Glimmer3; putative YP_003006617.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_003006618.1 identified by Glimmer3; putative YP_003006619.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_003006620.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA YP_003006621.1 catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate YP_003006622.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_003006623.1 identified by Glimmer3; putative YP_003006624.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_003006625.1 identified by Glimmer3; putative YP_003006626.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_003006627.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_003006628.1 identified by Glimmer3; putative YP_003006629.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_003006630.1 identified by Glimmer3; putative YP_003006631.1 stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit YP_003006632.1 identified by Glimmer3; putative YP_003006633.1 identified by Glimmer3; putative; similar to Sfri_2896 YP_003006634.1 identified by Glimmer3; putative YP_003006635.1 identified by Glimmer3; putative YP_003006636.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_003006637.1 RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA YP_003006638.1 hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides YP_003006639.1 identified by Glimmer3; putative YP_003006640.1 identified by Glimmer3; putative YP_003006641.1 identified by Glimmer3; putative YP_003006642.1 identified by Glimmer3; putative YP_003006643.1 identified by Glimmer3; putative YP_003006644.1 identified by Glimmer3; putative YP_003006645.1 identified by Glimmer3; putative YP_003006646.1 identified by Glimmer3; putative YP_003006647.1 identified by Glimmer3; putative YP_003006648.1 identified by Glimmer3; putative; (1-agpacyltransferase) (1-agpat) (lysophosphatidic acid acyltransferase)(lpaat) YP_003006649.1 catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine YP_003006650.1 identified by Glimmer3; putative YP_003006651.1 identified by Glimmer3; putative YP_003006652.1 identified by Glimmer3; putative YP_003006653.1 catalyzes the formation of phenol and pyruvate from tyrosine YP_003006654.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_003006655.1 identified by Glimmer3; putative YP_003006656.1 identified by Glimmer3; putative YP_003006657.1 identified by Glimmer3; putative YP_003006658.1 identified by Glimmer3; putative YP_003006659.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_003006660.1 putative transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters YP_003006661.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_003006662.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_003006663.1 identified by Glimmer3; putative YP_003006664.1 identified by Glimmer3; putative YP_003006665.1 identified by Glimmer3; putative YP_003006666.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_003006667.1 identified by Glimmer3; putative YP_003006668.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_003006669.1 identified by Glimmer3; putative YP_003006670.1 identified by Glimmer3; putative; (NAmPRTase)(Nampt) (Pre-B cell-enhancing factor) (Pre-B-cell colony-enhancingfactor 1) (Visfatin) YP_003006671.1 identified by Glimmer3; putative YP_003006672.1 identified by Glimmer3; putative YP_003006673.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_003006674.1 identified by Glimmer3; putative YP_003006675.1 identified by Glimmer3; putative YP_003006676.1 identified by Glimmer3; putative YP_003006677.1 identified by Glimmer3; putative YP_003006678.1 identified by Glimmer3; putative YP_003006679.1 identified by Glimmer3; putative YP_003006680.1 identified by Glimmer3; putative YP_003006681.1 identified by Glimmer3; putative YP_003006682.1 MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair YP_003006683.1 identified by Glimmer3; putative; (6-o-methylguanine-dna methyltransferase) (mgmt) (o-6-methylguanine-dna-alkyltransferase) YP_003006684.1 identified by Glimmer3; putative; (Outer membrane fadLprotein) (Outer membrane flp protein) YP_003006685.1 identified by Glimmer3; putative YP_003006686.1 identified by Glimmer3; putative YP_003006687.1 identified by Glimmer3; putative YP_003006688.1 identified by Glimmer3; putative YP_003006689.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_003006690.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_003006691.1 identified by Glimmer3; putative YP_003006692.1 identified by Glimmer3; putative YP_003006693.1 identified by Glimmer3; putative YP_003006694.1 identified by Glimmer3; putative YP_003006695.1 identified by Glimmer3; putative YP_003006696.1 identified by Glimmer3; putative YP_003006697.1 binds and unfolds substrates as part of the ClpXP protease YP_003006698.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_003006699.1 identified by Glimmer3; putative YP_003006700.1 identified by Glimmer3; putative YP_003006701.1 Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine YP_003006702.1 identified by Glimmer3; putative YP_003006703.1 identified by Glimmer3; putative YP_003006704.1 identified by Glimmer3; putative YP_003006705.1 identified by Glimmer3; putative YP_003006706.1 identified by Glimmer3; putative YP_003006707.1 identified by Glimmer3; putative YP_003006708.1 identified by Glimmer3; putative YP_003006709.1 identified by Glimmer3; putative YP_003006710.1 identified by Glimmer3; putative YP_003006711.1 identified by Glimmer3; putative YP_003006712.1 identified by Glimmer3; putative YP_003006713.1 identified by Glimmer3; putative YP_003006714.1 identified by Glimmer3; putative YP_003006715.1 identified by Glimmer3; putative YP_003006716.1 identified by Glimmer3; putative YP_003006717.1 OrfX; identified by Glimmer3; putative YP_003006718.1 identified by Glimmer3; putative YP_003006719.1 identified by Glimmer3; putative YP_003006720.1 identified by Glimmer3; putative YP_003006721.1 identified by Glimmer3; putative YP_003006722.1 identified by Glimmer3; putative YP_003006723.1 identified by Glimmer3; putative YP_003006724.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate YP_003006725.1 identified by Glimmer3; putative YP_003006726.1 With ArtMQJI transports arginine across the inner membrane YP_003006727.1 identified by Glimmer3; putative YP_003006728.1 with ArtPMJI transports arginine across the inner membrane YP_003006729.1 with ArtPQJI acts to transport arginine across the inner membrane YP_003006730.1 identified by Glimmer3; putative YP_003006731.1 identified by Glimmer3; putative YP_003006732.1 identified by Glimmer3; putative YP_003006733.1 identified by Glimmer3; putative YP_003006734.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_003006735.1 identified by Glimmer3; putative YP_003006736.1 identified by Glimmer3; putative YP_003006737.1 identified by Glimmer3; putative; (Peptidoglycanglycosyltransferase 3) (Penicillin-binding protein 3) (PBP-3) YP_003006738.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_003006739.1 identified by Glimmer3; putative; (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme) YP_003006740.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_003006741.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_003006742.1 identified by Glimmer3; putative YP_003006743.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_003006744.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_003006745.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_003006746.1 identified by Glimmer3; putative YP_003006747.1 identified by Glimmer3; putative YP_003006748.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_003006749.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_003006750.1 identified by Glimmer3; putative YP_003006751.1 identified by Glimmer3; putative YP_003006752.1 identified by Glimmer3; putative YP_003006753.1 identified by Glimmer3; putative YP_003006754.1 identified by Glimmer3; putative YP_003006755.1 molecular chaperone YP_003006756.1 identified by Glimmer3; putative YP_003006757.1 identified by Glimmer3; putative YP_003006758.1 identified by Glimmer3; putative YP_003006759.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_003006760.1 identified by Glimmer3; putative YP_003006761.1 identified by Glimmer3; putative; (adp-ribose diphosphatase)(adenosine diphosphoribose pyrophosphatase) (adpr-ppase) (adp-ribosephosphohydrolase) (asppase) YP_003006762.1 identified by Glimmer3; putative YP_003006763.1 identified by Glimmer3; putative YP_003006764.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA YP_003006765.1 identified by Glimmer3; putative YP_003006766.1 identified by Glimmer3; putative YP_003006767.1 3'-5' exonuclease of DNA polymerase III YP_003006768.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_003006769.1 identified by Glimmer3; putative YP_003006770.1 identified by Glimmer3; putative YP_003006771.1 identified by Glimmer3; putative YP_003006772.1 identified by Glimmer3; putative YP_003006773.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate YP_003006774.1 identified by Glimmer3; putative YP_003006775.1 identified by Glimmer3; putative YP_003006776.1 Transfers the fatty acyl group on membrane lipoproteins YP_003006777.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_003006778.1 catalyzes the removal of an N-terminal amino acid from a peptide or arylamide YP_003006779.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_003006780.1 identified by Glimmer3; putative YP_003006781.1 identified by Glimmer3; putative YP_003006782.1 identified by Glimmer3; putative YP_003006783.1 identified by Glimmer3; putative YP_003006784.1 identified by Glimmer3; putative; (Crystal violet resistance protein) (10-N-nonyl acridineorange resistance protein) YP_003006785.1 identified by Glimmer3; putative YP_003006786.1 identified by Glimmer3; putative YP_003006787.1 identified by Glimmer3; putative YP_003006788.1 identified by Glimmer3; putative YP_003006789.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_003006790.1 identified by Glimmer3; putative YP_003006791.1 identified by Glimmer3; putative YP_003006792.1 involved in the processing of the 5'end of 16S rRNA YP_003006793.1 cofactor involved in the reduction of disulfides YP_003006794.1 identified by Glimmer3; putative YP_003006795.1 identified by Glimmer3; putative YP_003006796.1 identified by Glimmer3; putative YP_003006797.1 identified by Glimmer3; putative YP_003006798.1 identified by Glimmer3; putative; (Sulfate-transporting ATPase) YP_003006799.1 involved in molybdenum transport YP_003006800.1 identified by Glimmer3; putative YP_003006801.1 identified by Glimmer3; putative YP_003006802.1 identified by Glimmer3; putative YP_003006803.1 identified by Glimmer3; putative YP_003006804.1 identified by Glimmer3; putative YP_003006805.1 identified by Glimmer3; putative YP_003006806.1 identified by Glimmer3; putative YP_003006807.1 identified by Glimmer3; putative YP_003006808.1 identified by Glimmer3; putative YP_003006809.1 identified by Glimmer3; putative YP_003006810.1 identified by Glimmer3; putative YP_003006811.1 identified by Glimmer3; putative YP_003006812.1 identified by Glimmer3; putative YP_003006813.1 identified by Glimmer3; putative YP_003006814.1 identified by Glimmer3; putative YP_003006815.1 identified by Glimmer3; putative YP_003006816.1 identified by Glimmer3; putative YP_003006817.1 identified by Glimmer3; putative YP_003006818.1 identified by Glimmer3; putative YP_003006819.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_003006820.1 identified by Glimmer3; putative YP_003006821.1 identified by Glimmer3; putative YP_003006822.1 MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor YP_003006823.1 identified by Glimmer3; putative YP_003006824.1 identified by Glimmer3; putative YP_003006825.1 identified by Glimmer3; putative YP_003006826.1 identified by Glimmer3; putative YP_003006827.1 identified by Glimmer3; putative YP_003006828.1 identified by Glimmer3; putative YP_003006829.1 identified by Glimmer3; putative YP_003006830.1 identified by Glimmer3; putative YP_003006831.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_003006832.1 catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases YP_003006833.1 identified by Glimmer3; putative YP_003006834.1 identified by Glimmer3; putative YP_003006835.1 identified by Glimmer3; putative YP_003006836.1 identified by Glimmer3; putative YP_003006837.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_003006838.1 mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system YP_003006839.1 participates with LolB in the incorporation of lipoprotein into the outer membrane YP_003006840.1 identified by Glimmer3; putative YP_003006841.1 identified by Glimmer3; putative YP_003006842.1 identified by Glimmer3; putative YP_003006843.1 catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme YP_003006844.1 identified by Glimmer3; putative YP_003006845.1 identified by Glimmer3; putative YP_003006846.1 identified by Glimmer3; putative YP_003006847.1 identified by Glimmer3; putative YP_003006848.1 identified by Glimmer3; putative YP_003006849.1 identified by Glimmer3; putative YP_003006850.1 identified by Glimmer3; putative YP_003006851.1 identified by Glimmer3; putative YP_003006852.1 identified by Glimmer3; putative YP_003006853.1 identified by Glimmer3; putative YP_003006854.1 identified by Glimmer3; putative YP_003006855.1 identified by Glimmer3; putative YP_003006856.1 identified by Glimmer3; putative YP_003006857.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_003006858.1 identified by Glimmer3; putative YP_003006859.1 identified by Glimmer3; putative YP_003006860.1 identified by Glimmer3; putative YP_003006861.1 identified by Glimmer3; putative YP_003006862.1 identified by Glimmer3; putative YP_003006863.1 identified by Glimmer3; putative YP_003006864.1 identified by Glimmer3; putative YP_003006865.1 identified by Glimmer3; putative YP_003006866.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_003006867.1 identified by Glimmer3; putative YP_003006868.1 identified by Glimmer3; putative YP_003006869.1 identified by Glimmer3; putative YP_003006870.1 identified by Glimmer3; putative YP_003006871.1 identified by Glimmer3; putative YP_003006872.1 negatively supercoils closed circular double-stranded DNA YP_003006873.1 Involved in ubiquinone biosynthesis YP_003006874.1 identified by Glimmer3; putative YP_003006875.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_003006876.1 identified by Glimmer3; putative YP_003006877.1 identified by Glimmer3; putative YP_003006878.1 negative modulator of the initiation of chromosome replication YP_003006879.1 identified by Glimmer3; putative YP_003006880.1 small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS YP_003006881.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_003006882.1 D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm YP_003006883.1 identified by Glimmer3; putative YP_003006884.1 Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA YP_003006885.1 identified by Glimmer3; putative YP_003006886.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_003006887.1 identified by Glimmer3; putative YP_003006888.1 identified by Glimmer3; putative; similar to VV1_1880 YP_003006889.1 identified by Glimmer3; putative YP_003006890.1 identified by Glimmer3; putative YP_003006891.1 identified by Glimmer3; putative YP_003006892.1 Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction YP_003006893.1 identified by Glimmer3; putative; (nadh-dependent enoyl-acp reductase) YP_003006894.1 identified by Glimmer3; putative YP_003006895.1 identified by Glimmer3; putative YP_003006896.1 identified by Glimmer3; putative YP_003006897.1 identified by Glimmer3; putative YP_003006898.1 identified by Glimmer3; putative YP_003006899.1 involved in methylation of ribosomal protein L3 YP_003006900.1 identified by Glimmer3; putative YP_003006901.1 identified by Glimmer3; putative; similar to y1583 YP_003006902.1 identified by Glimmer3; putative YP_003006903.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_003006904.1 identified by Glimmer3; putative YP_003006905.1 catalyzes the hydrolysis of acylphosphate YP_003006906.1 identified by Glimmer3; putative YP_003006907.1 identified by Glimmer3; putative YP_003006908.1 identified by Glimmer3; putative YP_003006909.1 identified by Glimmer3; putative YP_003006910.1 identified by Glimmer3; putative YP_003006911.1 identified by Glimmer3; putative YP_003006912.1 identified by Glimmer3; putative YP_003006913.1 identified by Glimmer3; putative YP_003006914.1 identified by Glimmer3; putative YP_003006915.1 identified by Glimmer3; putative YP_003006916.1 identified by Glimmer3; putative YP_003006917.1 identified by Glimmer3; putative YP_003006918.1 identified by Glimmer3; putative YP_003006919.1 identified by Glimmer3; putative YP_003006920.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_003006921.1 identified by Glimmer3; putative YP_003006922.1 identified by Glimmer3; putative YP_003006923.1 identified by Glimmer3; putative YP_003006924.1 catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis YP_003006925.1 identified by Glimmer3; putative YP_003006926.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_003006927.1 identified by Glimmer3; putative YP_003006928.1 identified by Glimmer3; putative YP_003006929.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_003006930.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_003006931.1 identified by Glimmer3; putative YP_003006932.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component YP_003006933.1 can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component YP_003006934.1 functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase YP_003006935.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_003006936.1 identified by Glimmer3; putative YP_003006938.1 identified by Glimmer3; putative YP_003006939.1 affects solute and DNA transport through an unknown mechanism YP_003006940.1 identified by Glimmer3; putative YP_003006941.1 identified by Glimmer3; putative YP_003006942.1 identified by Glimmer3; putative YP_003006943.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_003006944.1 identified by Glimmer3; putative; E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex YP_003006945.1 identified by Glimmer3; putative YP_003006946.1 catalyzes the interconversion of succinyl-CoA and succinate YP_003006947.1 identified by Glimmer3; putative; (Succinyl-CoA synthetase subunit alpha) (SCS-alpha) YP_003006949.1 identified by Glimmer3; putative YP_003006950.1 identified by Glimmer3; putative YP_003006951.1 identified by Glimmer3; putative YP_003006952.1 identified by Glimmer3; putative YP_003006953.1 identified by Glimmer3; putative YP_003006954.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_003006955.1 identified by Glimmer3; putative YP_003006956.1 identified by Glimmer3; putative YP_003006957.1 identified by Glimmer3; putative YP_003006958.1 identified by Glimmer3; putative YP_003006959.1 identified by Glimmer3; putative YP_003006960.1 identified by Glimmer3; putative; (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) YP_003006961.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal YP_003006962.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_003006963.1 identified by Glimmer3; putative YP_003006964.1 identified by Glimmer3; putative YP_003006965.1 identified by Glimmer3; putative YP_003006966.1 identified by Glimmer3; putative YP_003006967.1 identified by Glimmer3; putative YP_003006968.1 identified by Glimmer3; putative YP_003006969.1 identified by Glimmer3; putative YP_003006970.1 identified by Glimmer3; putative YP_003006971.1 identified by Glimmer3; putative YP_003006972.1 identified by Glimmer3; putative YP_003006973.1 identified by Glimmer3; putative YP_003006974.1 identified by Glimmer3; putative YP_003006975.1 identified by Glimmer3; putative YP_003006976.1 identified by Glimmer3; putative YP_003006977.1 identified by Glimmer3; putative YP_003006978.1 identified by Glimmer3; putative YP_003006979.1 identified by Glimmer3; putative YP_003006980.1 identified by Glimmer3; putative YP_003006981.1 identified by Glimmer3; putative YP_003006982.1 identified by Glimmer3; putative YP_003006983.1 identified by Glimmer3; putative YP_003006984.1 identified by Glimmer3; putative YP_003006985.1 identified by Glimmer3; putative YP_003006986.1 identified by Glimmer3; putative YP_003006987.1 identified by Glimmer3; putative YP_003006988.1 identified by Glimmer3; putative YP_003006989.1 identified by Glimmer3; putative YP_003006990.1 identified by Glimmer3; putative YP_003006991.1 identified by Glimmer3; putative YP_003006992.1 identified by Glimmer3; putative YP_003006993.1 identified by Glimmer3; putative YP_003006994.1 identified by Glimmer3; putative YP_003006995.1 identified by Glimmer3; putative YP_003006996.1 identified by Glimmer3; putative YP_003006997.1 identified by Glimmer3; putative YP_003006998.1 identified by Glimmer3; putative YP_003006999.1 identified by Glimmer3; putative YP_003007000.1 identified by Glimmer3; putative YP_003007001.1 identified by Glimmer3; putative YP_003007002.1 identified by Glimmer3; putative YP_003007003.1 identified by Glimmer3; putative YP_003007004.1 identified by Glimmer3; putative YP_003007005.1 identified by Glimmer3; putative YP_003007006.1 identified by Glimmer3; putative YP_003007007.1 identified by Glimmer3; putative YP_003007008.1 identified by Glimmer3; putative YP_003007009.1 identified by Glimmer3; putative YP_003007010.1 identified by Glimmer3; putative YP_003007011.1 identified by Glimmer3; putative YP_003007012.1 identified by Glimmer3; putative YP_003007013.1 identified by Glimmer3; putative YP_003007014.1 identified by Glimmer3; putative YP_003007015.1 identified by Glimmer3; putative YP_003007016.1 identified by Glimmer3; putative YP_003007017.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_003007018.1 identified by Glimmer3; putative YP_003007019.1 identified by Glimmer3; putative YP_003007020.1 responsible for the transport of C4-dicarboxylates during anaerobic growth YP_003007021.1 identified by Glimmer3; putative YP_003007022.1 identified by Glimmer3; putative YP_003007023.1 identified by Glimmer3; putative YP_003007027.1 identified by Glimmer3; putative YP_003007028.1 identified by Glimmer3; putative YP_003007029.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_003007030.1 catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon YP_003007031.1 identified by Glimmer3; putative YP_003007032.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine YP_003007033.1 identified by Glimmer3; putative; thiamin/thiamin pyrophospate-binding protein YP_003007034.1 permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine YP_003007035.1 identified by Glimmer3; putative YP_003007036.1 identified by Glimmer3; putative YP_003007037.1 identified by Glimmer3; putative YP_003007038.1 identified by Glimmer3; putative; similar to modification methylase KpnI (Adenine-specificmethyltransferase KpnI) (M.KpnI) YP_003007039.1 identified by Glimmer3; putative YP_003007040.1 identified by Glimmer3; putative YP_003007041.1 identified by Glimmer3; putative YP_003007042.1 identified by Glimmer3; putative YP_003007043.1 identified by Glimmer3; putative YP_003007044.1 identified by Glimmer3; putative YP_003007045.1 Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate YP_003007046.1 catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein YP_003007047.1 identified by Glimmer3; putative YP_003007048.1 catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid YP_003007049.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate YP_003007050.1 catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate YP_003007051.1 identified by Glimmer3; putative YP_003007052.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_003007053.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_003007054.1 identified by Glimmer3; putative YP_003007055.1 identified by Glimmer3; putative YP_003007056.1 identified by Glimmer3; putative; (Outer membrane protein 33K) (Outermembrane major heat-modifiable protein) YP_003007057.1 identified by Glimmer3; putative YP_003007058.1 identified by Glimmer3; putative YP_003007059.1 identified by Glimmer3; putative YP_003007060.1 identified by Glimmer3; putative YP_003007061.1 identified by Glimmer3; putative YP_003007062.1 identified by Glimmer3; putative YP_003007063.1 involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain YP_003007064.1 identified by Glimmer3; putative YP_003007065.1 identified by Glimmer3; putative YP_003007066.1 identified by Glimmer3; putative YP_003007067.1 identified by Glimmer3; putative YP_003007068.1 identified by Glimmer3; putative YP_003007069.1 identified by Glimmer3; putative YP_003007070.1 identified by Glimmer3; putative YP_003007071.1 identified by Glimmer3; putative YP_003007072.1 identified by Glimmer3; putative YP_003007073.1 identified by Glimmer3; putative YP_003007074.1 identified by Glimmer3; putative YP_003007075.1 identified by Glimmer3; putative YP_003007076.1 identified by Glimmer3; putative YP_003007077.1 identified by Glimmer3; putative YP_003007078.1 orf1; identified by Glimmer3; putative YP_003007079.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors YP_003007080.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_003007081.1 identified by Glimmer3; putative YP_003007082.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_003007083.1 identified by Glimmer3; putative YP_003007085.1 identified by Glimmer3; putative YP_003007086.1 identified by Glimmer3; putative YP_003007087.1 identified by Glimmer3; putative YP_003007088.1 identified by Glimmer3; putative YP_003007089.1 identified by Glimmer3; putative YP_003007090.1 identified by Glimmer3; putative YP_003007091.1 identified by Glimmer3; putative YP_003007092.1 identified by Glimmer3; putative YP_003007093.1 identified by Glimmer3; putative YP_003007094.1 identified by Glimmer3; putative YP_003007095.1 identified by Glimmer3; putative YP_003007096.1 identified by Glimmer3; putative YP_003007097.1 identified by Glimmer3; putative YP_003007098.1 identified by Glimmer3; putative; (HF-I) (HF-1) (Yersinia multipleregulator) (Yersinia regulator for pleiotropic phenotype) YP_003007099.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_003007100.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_003007101.1 identified by Glimmer3; putative YP_003007102.1 identified by Glimmer3; putative YP_003007103.1 identified by Glimmer3; putative YP_003007104.1 identified by Glimmer3; putative YP_003007105.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_003007106.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_003007107.1 identified by Glimmer3; putative YP_003007108.1 Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system YP_003007109.1 functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose YP_003007110.1 identified by Glimmer3; putative YP_003007111.1 identified by Glimmer3; putative YP_003007112.1 identified by Glimmer3; putative YP_003007113.1 identified by Glimmer3; putative YP_003007114.1 identified by Glimmer3; putative YP_003007115.1 catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate YP_003007116.1 identified by Glimmer3; putative YP_003007117.1 catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine YP_003007118.1 identified by Glimmer3; putative YP_003007119.1 identified by Glimmer3; putative YP_003007120.1 identified by Glimmer3; putative YP_003007121.1 identified by Glimmer3; putative; (Teichoicacid-transporting ATPase) YP_003007122.1 identified by Glimmer3; putative YP_003007123.1 identified by Glimmer3; putative YP_003007124.1 identified by Glimmer3; putative YP_003007125.1 identified by Glimmer3; putative YP_003007126.1 identified by Glimmer3; putative YP_003007127.1 identified by Glimmer3; putative YP_003007128.1 identified by Glimmer3; putative YP_003007129.1 identified by Glimmer3; putative YP_003007130.1 removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction YP_003007131.1 identified by Glimmer3; putative YP_003007132.1 identified by Glimmer3; putative YP_003007133.1 identified by Glimmer3; putative YP_003007134.1 identified by Glimmer3; putative YP_003007135.1 identified by Glimmer3; putative YP_003007136.1 identified by Glimmer3; putative YP_003007137.1 catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis YP_003007138.1 identified by Glimmer3; putative YP_003007139.1 identified by Glimmer3; putative YP_003007140.1 identified by Glimmer3; putative YP_003007141.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation YP_003007142.1 identified by Glimmer3; putative YP_003007143.1 with TehA confers resistance to tellurite YP_003007144.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_003007145.1 E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains YP_003007146.1 E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_003007147.1 identified by Glimmer3; putative YP_003007148.1 identified by Glimmer3; putative YP_003007149.1 catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine YP_003007150.1 catalyzes the formation of anthranilate from chorismate and glutamine; functions in tryptophan biosynthesis YP_003007151.1 Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor YP_003007152.1 identified by Glimmer3; putative YP_003007153.1 identified by Glimmer3; putative YP_003007154.1 identified by Glimmer3; putative YP_003007155.1 identified by Glimmer3; putative YP_003007156.1 identified by Glimmer3; putative YP_003007157.1 identified by Glimmer3; putative YP_003007158.1 identified by Glimmer3; putative YP_003007159.1 identified by Glimmer3; putative YP_003007160.1 identified by Glimmer3; putative YP_003007161.1 identified by Glimmer3; putative YP_003007162.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_003007163.1 identified by Glimmer3; putative YP_003007164.1 identified by Glimmer3; putative YP_003007165.1 part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane YP_003007166.1 identified by Glimmer3; putative YP_003007167.1 converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer YP_003007168.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_003007169.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_003007170.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_003007171.1 identified by Glimmer3; putative YP_003007172.1 identified by Glimmer3; putative YP_003007173.1 identified by Glimmer3; putative YP_003007174.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_003007175.1 identified by Glimmer3; putative YP_003007176.1 identified by Glimmer3; putative YP_003007177.1 B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA YP_003007178.1 identified by Glimmer3; putative YP_003007179.1 Catalyzes the rate-limiting step in dNTP synthesis YP_003007180.1 identified by Glimmer3; putative YP_003007181.1 identified by Glimmer3; putative YP_003007182.1 identified by Glimmer3; putative YP_003007183.1 identified by Glimmer3; putative YP_003007184.1 identified by Glimmer3; putative YP_003007185.1 identified by Glimmer3; putative YP_003007186.1 identified by Glimmer3; putative YP_003007187.1 identified by Glimmer3; putative YP_003007188.1 identified by Glimmer3; putative YP_003007189.1 identified by Glimmer3; putative YP_003007190.1 identified by Glimmer3; putative YP_003007191.1 identified by Glimmer3; putative YP_003007192.1 identified by Glimmer3; putative YP_003007193.1 identified by Glimmer3; putative YP_003007194.1 identified by Glimmer3; putative YP_003007195.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_003007196.1 identified by Glimmer3; putative YP_003007197.1 identified by Glimmer3; putative YP_003007198.1 identified by Glimmer3; putative; (fmn-dependent nadh-azocompound oxidoreductase) (azo-dye reductase) YP_003007199.1 SohB; periplasmic protein; member of the peptidase S49 family YP_003007200.1 identified by Glimmer3; putative YP_003007201.1 identified by Glimmer3; putative YP_003007202.1 identified by Glimmer3; putative YP_003007203.1 catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003007204.1 identified by Glimmer3; putative YP_003007205.1 identified by Glimmer3; putative YP_003007206.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_003007207.1 identified by Glimmer3; putative YP_003007208.1 identified by Glimmer3; putative YP_003007209.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_003007210.1 identified by Glimmer3; putative YP_003007211.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_003007212.1 identified by Glimmer3; putative YP_003007213.1 identified by Glimmer3; putative YP_003007214.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_003007215.1 identified by Glimmer3; putative YP_003007216.1 identified by Glimmer3; putative YP_003007217.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) YP_003007218.1 identified by Glimmer3; putative YP_003007219.1 identified by Glimmer3; putative YP_003007220.1 identified by Glimmer3; putative YP_003007221.1 identified by Glimmer3; putative YP_003007222.1 identified by Glimmer3; putative YP_003007223.1 identified by Glimmer3; putative YP_003007224.1 identified by Glimmer3; putative YP_003007225.1 identified by Glimmer3; putative YP_003007226.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003007227.1 identified by Glimmer3; putative YP_003007228.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_003007229.1 identified by Glimmer3; putative YP_003007230.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_003007231.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_003007232.1 identified by Glimmer3; putative YP_003007233.1 identified by Glimmer3; putative YP_003007234.1 identified by Glimmer3; putative YP_003007235.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_003007236.1 identified by Glimmer3; putative YP_003007237.1 identified by Glimmer3; putative YP_003007238.1 acts with MukB and MukE to condense the chromosome and allow for segregation during cell division YP_003007239.1 identified by Glimmer3; putative YP_003007240.1 identified by Glimmer3; putative YP_003007241.1 acts with MukB and MukF to condense the chromosome and allow for segregation during cell division YP_003007242.1 SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects YP_003007243.1 identified by Glimmer3; putative YP_003007244.1 Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates YP_003007245.1 identified by Glimmer3; putative YP_003007246.1 identified by Glimmer3; putative YP_003007247.1 identified by Glimmer3; putative YP_003007248.1 Global transcription factor that controls the expression of over 100 target genes in response to anoxia YP_003007249.1 with UspC and UspD is involved in resistance to UV irradiation YP_003007250.1 identified by Glimmer3; putative YP_003007251.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_003007252.1 identified by Glimmer3; putative YP_003007253.1 identified by Glimmer3; putative YP_003007254.1 identified by Glimmer3; putative YP_003007255.1 identified by Glimmer3; putative YP_003007256.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors YP_003007257.1 identified by Glimmer3; putative YP_003007258.1 identified by Glimmer3; putative YP_003007259.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_003007260.1 catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate YP_003007261.1 identified by Glimmer3; putative YP_003007262.1 identified by Glimmer3; putative YP_003007263.1 identified by Glimmer3; putative YP_003007264.1 identified by Glimmer3; putative YP_003007265.1 identified by Glimmer3; putative YP_003007266.1 identified by Glimmer3; putative YP_003007267.1 identified by Glimmer3; putative YP_003007268.1 identified by Glimmer3; putative YP_003007269.1 identified by Glimmer3; putative YP_003007270.1 identified by Glimmer3; putative; (Outer membrane protein 33K) (Outermembrane major heat-modifiable protein) YP_003007271.1 identified by Glimmer3; putative YP_003007272.1 identified by Glimmer3; putative YP_003007273.1 ORF-17; identified by Glimmer3; putative YP_003007274.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_003007275.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_003007276.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_003007277.1 putative metalloprotease YP_003007278.1 identified by Glimmer3; putative YP_003007279.1 identified by Glimmer3; putative YP_003007280.1 identified by Glimmer3; putative YP_003007281.1 identified by Glimmer3; putative YP_003007282.1 identified by Glimmer3; putative YP_003007283.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_003007284.1 identified by Glimmer3; putative YP_003007285.1 identified by Glimmer3; putative YP_003007286.1 identified by Glimmer3; putative YP_003007287.1 monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate YP_003007288.1 involved in hydrogen uptake YP_003007289.1 Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2 YP_003007290.1 HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits YP_003007291.1 involved in hydrogen uptake YP_003007292.1 protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC) YP_003007293.1 identified by Glimmer3; putative YP_003007294.1 identified by Glimmer3; putative YP_003007295.1 identified by Glimmer3; putative YP_003007296.1 identified by Glimmer3; putative YP_003007297.1 catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide YP_003007298.1 catalyzes the formation of pyruvate from oxaloacetate YP_003007299.1 identified by Glimmer3; putative YP_003007300.1 identified by Glimmer3; putative YP_003007301.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_003007302.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_003007303.1 Catalyzes the rate-limiting step in dNTP synthesis YP_003007304.1 identified by Glimmer3; putative YP_003007305.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_003007306.1 identified by Glimmer3; putative YP_003007307.1 identified by Glimmer3; putative YP_003007308.1 identified by Glimmer3; putative YP_003007309.1 identified by Glimmer3; putative YP_003007310.1 identified by Glimmer3; putative YP_003007311.1 identified by Glimmer3; putative YP_003007312.1 identified by Glimmer3; putative YP_003007313.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_003007314.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003007315.1 identified by Glimmer3; putative YP_003007316.1 identified by Glimmer3; putative YP_003007317.1 identified by Glimmer3; putative YP_003007318.1 identified by Glimmer3; putative YP_003007319.1 identified by Glimmer3; putative YP_003007320.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_003007321.1 identified by Glimmer3; putative; similar to y3024 YP_003007322.1 alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family YP_003007323.1 TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor YP_003007324.1 identified by Glimmer3; putative YP_003007325.1 identified by Glimmer3; putative YP_003007326.1 identified by Glimmer3; putative YP_003007327.1 Required for the synthesis of the thiazole moiety YP_003007328.1 identified by Glimmer3; putative YP_003007329.1 identified by Glimmer3; putative YP_003007330.1 identified by Glimmer3; putative YP_003007331.1 identified by Glimmer3; putative YP_003007332.1 identified by Glimmer3; putative YP_003007333.1 phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel YP_003007334.1 identified by Glimmer3; putative YP_003007335.1 forms a direct contact with the tRNA during translation YP_003007336.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_003007337.1 identified by Glimmer3; putative YP_003007338.1 identified by Glimmer3; putative YP_003007339.1 identified by Glimmer3; putative YP_003007340.1 identified by Glimmer3; putative YP_003007341.1 identified by Glimmer3; putative YP_003007342.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_003007343.1 identified by Glimmer3; putative YP_003007344.1 identified by Glimmer3; putative; simlar to y2737 YP_003007345.1 identified by Glimmer3; putative YP_003007346.1 identified by Glimmer3; putative YP_003007347.1 catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp YP_003007349.1 identified by Glimmer3; putative YP_003007350.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis YP_003007351.1 identified by Glimmer3; putative YP_003007352.1 identified by Glimmer3; putative YP_003007353.1 identified by Glimmer3; putative YP_003007354.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_003007355.1 identified by Glimmer3; putative YP_003007356.1 identified by Glimmer3; putative YP_003007357.1 identified by Glimmer3; putative YP_003007358.1 identified by Glimmer3; putative YP_003007359.1 binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism YP_003007360.1 identified by Glimmer3; putative YP_003007361.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_003007362.1 identified by Glimmer3; putative YP_003007363.1 binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers YP_003007364.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_003007365.1 highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein YP_003007366.1 identified by Glimmer3; putative YP_003007367.1 identified by Glimmer3; putative YP_003007368.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones YP_003007369.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_003007370.1 identified by Glimmer3; putative YP_003007371.1 identified by Glimmer3; putative YP_003007372.1 penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains YP_003007373.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_003007374.1 identified by Glimmer3; putative YP_003007375.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase YP_003007376.1 identified by Glimmer3; putative YP_003007377.1 porin involved in the transport of maltose and maltodextrins YP_003007378.1 identified by Glimmer3; putative YP_003007379.1 with malEFG is involved in import of maltose/maltodextrin YP_003007380.1 functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis YP_003007381.1 functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis YP_003007382.1 with MalKGE is involved in maltose transport into the cell YP_003007383.1 with MalKFE is involved in the transport of maltose into the cell YP_003007384.1 periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds YP_003007385.1 identified by Glimmer3; putative YP_003007386.1 identified by Glimmer3; putative YP_003007387.1 identified by Glimmer3; putative YP_003007388.1 identified by Glimmer3; putative YP_003007389.1 identified by Glimmer3; putative YP_003007390.1 identified by Glimmer3; putative YP_003007391.1 identified by Glimmer3; putative YP_003007392.1 identified by Glimmer3; putative YP_003007393.1 identified by Glimmer3; putative YP_003007394.1 identified by Glimmer3; putative YP_003007395.1 identified by Glimmer3; putative YP_003007396.1 identified by Glimmer3; putative YP_003007397.1 identified by Glimmer3; putative YP_003007398.1 identified by Glimmer3; putative YP_003007399.1 identified by Glimmer3; putative YP_003007400.1 identified by Glimmer3; putative YP_003007401.1 identified by Glimmer3; putative YP_003007402.1 Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides YP_003007403.1 identified by Glimmer3; putative YP_003007404.1 amylomaltase; acts to release glucose from maltodextrins YP_003007405.1 identified by Glimmer3; putative YP_003007406.1 catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate YP_003007407.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_003007408.1 identified by Glimmer3; putative YP_003007409.1 identified by Glimmer3; putative YP_003007410.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_003007411.1 catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate YP_003007412.1 identified by Glimmer3; putative YP_003007413.1 identified by Glimmer3; putative; (G-3-P transporter) (G-3-P permease) YP_003007414.1 identified by Glimmer3; putative YP_003007415.1 identified by Glimmer3; putative YP_003007416.1 identified by Glimmer3; putative YP_003007417.1 identified by Glimmer3; putative YP_003007418.1 identified by Glimmer3; putative YP_003007419.1 identified by Glimmer3; putative YP_003007420.1 involved in the transport of lipid A across the inner membrane YP_003007421.1 identified by Glimmer3; putative YP_003007422.1 identified by Glimmer3; putative YP_003007423.1 CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS YP_003007424.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_003007425.1 identified by Glimmer3; putative YP_003007426.1 identified by Glimmer3; putative YP_003007427.1 lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments YP_003007428.1 identified by Glimmer3; putative YP_003007429.1 identified by Glimmer3; putative YP_003007430.1 identified by Glimmer3; putative YP_003007431.1 identified by Glimmer3; putative YP_003007432.1 identified by Glimmer3; putative YP_003007433.1 identified by Glimmer3; putative YP_003007434.1 catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme YP_003007435.1 forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm YP_003007436.1 identified by Glimmer3; putative YP_003007437.1 Regulatory factor involved in maltose metabolism YP_003007438.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_003007439.1 phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least YP_003007440.1 identified by Glimmer3; putative YP_003007441.1 identified by Glimmer3; putative YP_003007442.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_003007443.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_003007444.1 identified by Glimmer3; putative YP_003007445.1 identified by Glimmer3; putative YP_003007446.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_003007447.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_003007448.1 identified by Glimmer3; putative YP_003007449.1 identified by Glimmer3; putative YP_003007450.1 identified by Glimmer3; putative YP_003007451.1 identified by Glimmer3; putative; similar to minC YP_003007452.1 identified by Glimmer3; putative YP_003007453.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_003007454.1 identified by Glimmer3; putative YP_003007455.1 identified by Glimmer3; putative YP_003007456.1 identified by Glimmer3; putative YP_003007457.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_003007458.1 identified by Glimmer3; putative YP_003007459.1 involved in the import of serine and threonine coupled with the import of sodium YP_003007460.1 identified by Glimmer3; putative YP_003007461.1 identified by Glimmer3; putative YP_003007462.1 identified by Glimmer3; putative YP_003007463.1 identified by Glimmer3; putative YP_003007464.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_003007465.1 identified by Glimmer3; putative YP_003007466.1 identified by Glimmer3; putative YP_003007467.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_003007468.1 identified by Glimmer3; putative YP_003007469.1 identified by Glimmer3; putative YP_003007470.1 identified by Glimmer3; putative YP_003007471.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_003007472.1 identified by Glimmer3; putative YP_003007473.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_003007474.1 identified by Glimmer3; putative YP_003007475.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_003007476.1 identified by Glimmer3; putative YP_003007477.1 catalyzes the formation of L-homocysteine from cystathionine YP_003007478.1 identified by Glimmer3; putative YP_003007479.1 identified by Glimmer3; putative YP_003007480.1 identified by Glimmer3; putative YP_003007481.1 identified by Glimmer3; putative YP_003007482.1 identified by Glimmer3; putative YP_003007483.1 identified by Glimmer3; putative YP_003007484.1 identified by Glimmer3; putative YP_003007485.1 identified by Glimmer3; putative YP_003007486.1 identified by Glimmer3; putative YP_003007487.1 identified by Glimmer3; putative YP_003007488.1 identified by Glimmer3; putative YP_003007489.1 identified by Glimmer3; putative YP_003007490.1 identified by Glimmer3; putative YP_003007491.1 identified by Glimmer3; putative YP_003007492.1 identified by Glimmer3; putative YP_003007493.1 identified by Glimmer3; putative YP_003007494.1 identified by Glimmer3; putative YP_003007495.1 identified by Glimmer3; putative YP_003007496.1 identified by Glimmer3; putative YP_003007497.1 identified by Glimmer3; putative YP_003007498.1 identified by Glimmer3; putative YP_003007499.1 identified by Glimmer3; putative YP_003007500.1 identified by Glimmer3; putative YP_003007501.1 identified by Glimmer3; putative YP_003007502.1 identified by Glimmer3; putative YP_003007503.1 identified by Glimmer3; putative YP_003007504.1 identified by Glimmer3; putative YP_003007505.1 identified by Glimmer3; putative YP_003007506.1 identified by Glimmer3; putative YP_003007507.1 identified by Glimmer3; putative YP_003007508.1 identified by Glimmer3; putative YP_003007509.1 identified by Glimmer3; putative YP_003007510.1 identified by Glimmer3; putative YP_003007511.1 identified by Glimmer3; putative YP_003007512.1 identified by Glimmer3; putative YP_003007513.1 Activates fatty acids by binding to coenzyme A YP_003007514.1 identified by Glimmer3; putative YP_003007515.1 identified by Glimmer3; putative YP_003007516.1 identified by Glimmer3; putative YP_003007517.1 identified by Glimmer3; putative YP_003007518.1 identified by Glimmer3; putative YP_003007519.1 identified by Glimmer3; putative; carnitine/choline ABC transporter, glycine betaine/carnitine/choline-binding protein YP_003007520.1 identified by Glimmer3; putative; (Quaternary-amine-transporting ATPase) YP_003007521.1 identified by Glimmer3; putative YP_003007522.1 identified by Glimmer3; putative YP_003007523.1 identified by Glimmer3; putative YP_003007524.1 in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c YP_003007525.1 identified by Glimmer3; putative YP_003007526.1 identified by Glimmer3; putative YP_003007527.1 identified by Glimmer3; putative YP_003007528.1 identified by Glimmer3; putative YP_003007529.1 identified by Glimmer3; putative YP_003007530.1 identified by Glimmer3; putative YP_003007531.1 identified by Glimmer3; putative YP_003007532.1 identified by Glimmer3; putative YP_003007533.1 identified by Glimmer3; putative YP_003007534.1 identified by Glimmer3; putative YP_003007535.1 identified by Glimmer3; putative YP_003007536.1 identified by Glimmer3; putative YP_003007537.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA YP_003007538.1 identified by Glimmer3; putative YP_003007539.1 unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair. YP_003007540.1 identified by Glimmer3; putative YP_003007541.1 identified by Glimmer3; putative YP_003007542.1 identified by Glimmer3; putative; (Gluconate utilization systemGNT-I transcriptional repressor) YP_003007543.1 identified by Glimmer3; putative YP_003007544.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth YP_003007545.1 identified by Glimmer3; putative YP_003007546.1 identified by Glimmer3; putative YP_003007547.1 identified by Glimmer3; putative YP_003007548.1 identified by Glimmer3; putative YP_003007549.1 Part of the ABC transporter complex modABC involved in molybdenum import YP_003007550.1 part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE YP_003007551.1 identified by Glimmer3; putative YP_003007552.1 identified by Glimmer3; putative YP_003007553.1 identified by Glimmer3; putative; (Nucleoside 5'-monophosphatephosphohydrolase) (5'-deoxyribonucleotidase) YP_003007554.1 identified by Glimmer3; putative YP_003007555.1 identified by Glimmer3; putative YP_003007556.1 identified by Glimmer3; putative YP_003007557.1 identified by Glimmer3; putative YP_003007558.1 Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence YP_003007559.1 identified by Glimmer3; putative; (RNA-uridine isomerase) (RNA pseudouridylate synthase) (ORF2) YP_003007560.1 identified by Glimmer3; putative YP_003007561.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_003007562.1 oxidizes malate to oxaloacetate YP_003007563.1 identified by Glimmer3; putative YP_003007564.1 identified by Glimmer3; putative YP_003007565.1 identified by Glimmer3; putative YP_003007566.1 identified by Glimmer3; putative; (na(+)-translocating nqr subunit e) (na(+)-nqr subunit e) (nqr complexsubunit e) (nqr-1 subunit e) YP_003007567.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen YP_003007568.1 identified by Glimmer3; putative YP_003007569.1 RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents YP_003007570.1 identified by Glimmer3; putative YP_003007571.1 identified by Glimmer3; putative YP_003007572.1 identified by Glimmer3; putative YP_003007573.1 identified by Glimmer3; putative YP_003007574.1 identified by Glimmer3; putative YP_003007575.1 identified by Glimmer3; putative YP_003007576.1 identified by Glimmer3; putative YP_003007577.1 Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth YP_003007578.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate YP_003007579.1 identified by Glimmer3; putative YP_003007580.1 identified by Glimmer3; putative YP_003007581.1 identified by Glimmer3; putative YP_003007582.1 identified by Glimmer3; putative YP_003007583.1 identified by Glimmer3; putative YP_003007584.1 identified by Glimmer3; putative YP_003007585.1 identified by Glimmer3; putative YP_003007586.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose YP_003007587.1 Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA YP_003007588.1 identified by Glimmer3; putative YP_003007589.1 identified by Glimmer3; putative YP_003007590.1 identified by Glimmer3; putative YP_003007591.1 identified by Glimmer3; putative YP_003007592.1 periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate YP_003007593.1 identified by Glimmer3; putative YP_003007594.1 identified by Glimmer3; putative YP_003007595.1 identified by Glimmer3; putative YP_003007596.1 identified by Glimmer3; putative YP_003007597.1 identified by Glimmer3; putative YP_003007598.1 identified by Glimmer3; putative YP_003007599.1 identified by Glimmer3; putative; (Formate-hydrogen-lyase-linked,selenocysteine-containing polypeptide) (Formate dehydrogenase-H alphasubunit) (FDH-H) YP_003007600.1 identified by Glimmer3; putative; 707UM ORF YP_003007601.1 involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE YP_003007602.1 identified by Glimmer3; putative YP_003007603.1 identified by Glimmer3; putative YP_003007604.1 identified by Glimmer3; putative YP_003007605.1 identified by Glimmer3; putative YP_003007606.1 identified by Glimmer3; putative YP_003007607.1 interacts with formate dehydrogenase to produce an active formate hydrogenlyase complex which cleaves formate to dihydrogen and carbon dioxide YP_003007608.1 identified by Glimmer3; putative YP_003007609.1 identified by Glimmer3; putative YP_003007610.1 identified by Glimmer3; putative YP_003007611.1 identified by Glimmer3; putative YP_003007612.1 identified by Glimmer3; putative YP_003007613.1 catalyzes the conversion of shikimate to 3-dehydroshikimate YP_003007614.1 identified by Glimmer3; putative YP_003007615.1 identified by Glimmer3; putative YP_003007616.1 identified by Glimmer3; putative YP_003007617.1 identified by Glimmer3; putative YP_003007618.1 identified by Glimmer3; putative YP_003007619.1 GTP hydrolase involved in nickel liganding into hydrogenases YP_003007620.1 identified by Glimmer3; putative YP_003007621.1 identified by Glimmer3; putative YP_003007622.1 catalyzes the ATP-dependent transport of cobalt YP_003007623.1 identified by Glimmer3; putative YP_003007624.1 identified by Glimmer3; putative YP_003007625.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_003007626.1 identified by Glimmer3; putative YP_003007627.1 identified by Glimmer3; putative YP_003007628.1 identified by Glimmer3; putative YP_003007629.1 identified by Glimmer3; putative YP_003007630.1 identified by Glimmer3; putative YP_003007631.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_003007632.1 identified by Glimmer3; putative YP_003007633.1 identified by Glimmer3; putative YP_003007634.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_003007635.1 identified by Glimmer3; putative YP_003007636.1 identified by Glimmer3; putative YP_003007637.1 identified by Glimmer3; putative YP_003007638.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_003007639.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_003007640.1 identified by Glimmer3; putative YP_003007641.1 identified by Glimmer3; putative YP_003007642.1 identified by Glimmer3; putative YP_003007643.1 identified by Glimmer3; putative YP_003007644.1 Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import YP_003007645.1 identified by Glimmer3; putative YP_003007646.1 identified by Glimmer3; putative YP_003007647.1 identified by Glimmer3; putative YP_003007648.1 identified by Glimmer3; putative YP_003007649.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis YP_003007650.1 identified by Glimmer3; putative YP_003007651.1 identified by Glimmer3; putative YP_003007652.1 J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins YP_003007653.1 involved in the maturation of iron-sulfur cluster-containing proteins YP_003007654.1 identified by Glimmer3; putative YP_003007655.1 identified by Glimmer3; putative YP_003007656.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_003007657.1 identified by Glimmer3; putative YP_003007658.1 identified by Glimmer3; putative YP_003007659.1 identified by Glimmer3; putative YP_003007660.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_003007661.1 identified by Glimmer3; putative YP_003007662.1 identified by Glimmer3; putative YP_003007663.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_003007664.1 identified by Glimmer3; putative YP_003007665.1 identified by Glimmer3; putative YP_003007666.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_003007667.1 identified by Glimmer3; putative YP_003007668.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_003007669.1 identified by Glimmer3; putative YP_003007670.1 identified by Glimmer3; putative YP_003007671.1 identified by Glimmer3; putative YP_003007672.1 identified by Glimmer3; putative YP_003007673.1 identified by Glimmer3; putative YP_003007674.1 identified by Glimmer3; putative YP_003007675.1 identified by Glimmer3; putative YP_003007676.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_003007677.1 identified by Glimmer3; putative YP_003007678.1 identified by Glimmer3; putative YP_003007679.1 binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_003007680.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_003007681.1 identified by Glimmer3; putative YP_003007682.1 identified by Glimmer3; putative YP_003007683.1 identified by Glimmer3; putative YP_003007684.1 NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds YP_003007685.1 identified by Glimmer3; putative YP_003007686.1 identified by Glimmer3; putative YP_003007687.1 identified by Glimmer3; putative YP_003007688.1 identified by Glimmer3; putative YP_003007689.1 identified by Glimmer3; putative YP_003007690.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source YP_003007691.1 L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate YP_003007692.1 negative regulator of ulaG and ulaABCDEF YP_003007693.1 identified by Glimmer3; putative YP_003007694.1 identified by Glimmer3; putative YP_003007695.1 identified by Glimmer3; putative; (pts system ascorbate-specific eiia component) YP_003007696.1 catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization YP_003007697.1 identified by Glimmer3; putative YP_003007698.1 identified by Glimmer3; putative; similar to y2607 YP_003007699.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_003007700.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_003007701.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_003007702.1 catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose YP_003007703.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism YP_003007704.1 catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P YP_003007705.1 identified by Glimmer3; putative; (Mgl repressor and galactoseultrainduction factor) YP_003007706.1 identified by Glimmer3; putative; (gbp) (d-galactose/d-glucose-binding protein) (ggbp) YP_003007707.1 with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains YP_003007708.1 ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex YP_003007709.1 identified by Glimmer3; putative YP_003007710.1 identified by Glimmer3; putative YP_003007711.1 FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_003007712.1 identified by Glimmer3; putative YP_003007713.1 identified by Glimmer3; putative YP_003007714.1 identified by Glimmer3; putative YP_003007715.1 identified by Glimmer3; putative YP_003007716.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_003007717.1 identified by Glimmer3; putative YP_003007718.1 identified by Glimmer3; putative YP_003007719.1 identified by Glimmer3; putative YP_003007720.1 identified by Glimmer3; putative YP_003007721.1 Involved in cell division; probably involved in intracellular septation YP_003007722.1 identified by Glimmer3; putative YP_003007723.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_003007724.1 identified by Glimmer3; putative YP_003007725.1 When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription YP_003007726.1 identified by Glimmer3; putative YP_003007727.1 exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH YP_003007728.1 identified by Glimmer3; putative YP_003007729.1 identified by Glimmer3; putative YP_003007730.1 identified by Glimmer3; putative YP_003007731.1 identified by Glimmer3; putative YP_003007732.1 identified by Glimmer3; putative YP_003007733.1 decatenates replicating daughter chromosomes YP_003007734.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_003007735.1 identified by Glimmer3; putative YP_003007736.1 identified by Glimmer3; putative YP_003007737.1 identified by Glimmer3; putative YP_003007738.1 part of the ABC transporter involved in the uptake of citrate-dependent Fe(3+) YP_003007739.1 part of the FecBCDE citrate-dependent iron (III) transport system YP_003007740.1 Ferric citrate binds FecA and is transported across the outer membrane while transmits a signal across the cytoplasmic membrane protein FecR. FecR transmits a signal across the membrane and activates the cytoplasmic FecI that directs the RNA polymerase to express the fecABCDE operon (which encodes the ferric citrate outer membrane receptor and the ferric citrate ABC transporter), as well as fecIR. FecD is one of two (along with FecC) integral membrane protein components of the iron dicitrate ABC transporter. YP_003007741.1 Part of the FecBCDE citrate-dependent iron (III) transport system YP_003007742.1 lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_003007743.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_003007744.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_003007745.1 part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB YP_003007746.1 in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane YP_003007747.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_003007748.1 identified by Glimmer3; putative YP_003007749.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_003007750.1 identified by Glimmer3; putative YP_003007751.1 identified by Glimmer3; putative YP_003007752.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_003007753.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_003007754.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_003007755.1 identified by Glimmer3; putative YP_003007756.1 identified by Glimmer3; putative YP_003007757.1 identified by Glimmer3; putative YP_003007758.1 identified by Glimmer3; putative YP_003007759.1 identified by Glimmer3; putative YP_003007760.1 identified by Glimmer3; putative YP_003007761.1 identified by Glimmer3; putative YP_003007762.1 identified by Glimmer3; putative YP_003007763.1 identified by Glimmer3; putative YP_003007764.1 identified by Glimmer3; putative YP_003007765.1 identified by Glimmer3; putative YP_003007766.1 identified by Glimmer3; putative YP_003007767.1 identified by Glimmer3; putative YP_003007768.1 identified by Glimmer3; putative YP_003007769.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_003007770.1 identified by Glimmer3; putative YP_003007771.1 identified by Glimmer3; putative YP_003007772.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_003007773.1 involved in de novo purine biosynthesis YP_003007774.1 identified by Glimmer3; putative YP_003007775.1 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit YP_003007776.1 with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB YP_003007777.1 alanine acetyltransferase that specifically acetylates ribosomal protein S18 YP_003007778.1 identified by Glimmer3; putative YP_003007779.1 identified by Glimmer3; putative YP_003007780.1 identified by Glimmer3; putative YP_003007781.1 identified by Glimmer3; putative YP_003007782.1 identified by Glimmer3; putative YP_003007783.1 identified by Glimmer3; putative YP_003007784.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_003007785.1 membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins YP_003007786.1 identified by Glimmer3; putative YP_003007787.1 identified by Glimmer3; putative YP_003007788.1 identified by Glimmer3; putative YP_003007789.1 identified by Glimmer3; putative YP_003007790.1 identified by Glimmer3; putative YP_003007791.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_003007792.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_003007793.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_003007794.1 identified by Glimmer3; putative YP_003007795.1 identified by Glimmer3; putative YP_003007796.1 converts dATP to dAMP and pyrophosphate YP_003007797.1 identified by Glimmer3; putative YP_003007798.1 identified by Glimmer3; putative YP_003007799.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_003007800.1 identified by Glimmer3; putative YP_003007801.1 identified by Glimmer3; putative YP_003007802.1 identified by Glimmer3; putative YP_003007803.1 identified by Glimmer3; putative YP_003007804.1 identified by Glimmer3; putative YP_003007805.1 identified by Glimmer3; putative YP_003007806.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A) YP_003007807.1 identified by Glimmer3; putative YP_003007808.1 identified by Glimmer3; putative YP_003007809.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_003007810.1 identified by Glimmer3; putative YP_003007811.1 identified by Glimmer3; putative YP_003007812.1 identified by Glimmer3; putative YP_003007813.1 identified by Glimmer3; putative YP_003007814.1 identified by Glimmer3; putative YP_003007815.1 identified by Glimmer3; putative YP_003007816.1 involved in the peptidyltransferase reaction during translation YP_003007817.1 identified by Glimmer3; putative YP_003007818.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_003007819.1 identified by Glimmer3; putative YP_003007820.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_003007821.1 identified by Glimmer3; putative YP_003007822.1 identified by Glimmer3; putative YP_003007823.1 identified by Glimmer3; putative YP_003007824.1 identified by Glimmer3; putative YP_003007825.1 identified by Glimmer3; putative YP_003007826.1 identified by Glimmer3; putative YP_003007827.1 identified by Glimmer3; putative YP_003007828.1 identified by Glimmer3; putative YP_003007829.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_003007830.1 identified by Glimmer3; putative YP_003007831.1 identified by Glimmer3; putative YP_003007832.1 identified by Glimmer3; putative; (Protein-disulfide reductase) (Disulfide reductase) (C-type cytochromebiogenesis protein cycZ) (Inner membrane copper tolerance protein) YP_003007833.1 identified by Glimmer3; putative YP_003007834.1 identified by Glimmer3; putative YP_003007835.1 catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA YP_003007836.1 identified by Glimmer3; putative YP_003007837.1 identified by Glimmer3; putative YP_003007838.1 catalyzes the formation of cysteine from cystathionine; in B. subtilis also has O-acetylhomoserine thiolyase activity YP_003007839.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive YP_003007840.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_003007841.1 identified by Glimmer3; putative YP_003007842.1 identified by Glimmer3; putative YP_003007843.1 catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate YP_003007844.1 identified by Glimmer3; putative YP_003007846.1 membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues YP_003007847.1 identified by Glimmer3; putative YP_003007848.1 identified by Glimmer3; putative YP_003007849.1 identified by Glimmer3; putative YP_003007850.1 identified by Glimmer3; putative YP_003007851.1 identified by Glimmer3; putative YP_003007853.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_003007854.1 identified by Glimmer3; putative YP_003007855.1 identified by Glimmer3; putative YP_003007856.1 identified by Glimmer3; putative YP_003007857.1 identified by Glimmer3; putative YP_003007858.1 Essential for recycling GMP and indirectly, cGMP YP_003007859.1 promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_003007860.1 identified by Glimmer3; putative; (ATP:GTP 3'-pyrophosphotransferase)(ppGpp synthetase I) ((P)ppGpp synthetase) YP_003007861.1 catalyzes branch migration in Holliday junction intermediates YP_003007862.1 identified by Glimmer3; putative YP_003007863.1 identified by Glimmer3; putative YP_003007864.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_003007865.1 identified by Glimmer3; putative YP_003007866.1 identified by Glimmer3; putative YP_003007867.1 identified by Glimmer3; putative YP_003007868.1 identified by Glimmer3; putative YP_003007869.1 identified by Glimmer3; putative YP_003007870.1 identified by Glimmer3; putative YP_003007871.1 identified by Glimmer3; putative YP_003007872.1 identified by Glimmer3; putative YP_003007873.1 identified by Glimmer3; putative YP_003007874.1 identified by Glimmer3; putative YP_003007875.1 identified by Glimmer3; putative YP_003007876.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_003007877.1 identified by Glimmer3; putative; similar to Plu4061 YP_003007878.1 identified by Glimmer3; putative YP_003007879.1 identified by Glimmer3; putative YP_003007880.1 identified by Glimmer3; putative YP_003007881.1 identified by Glimmer3; putative YP_003007882.1 identified by Glimmer3; putative YP_003007883.1 identified by Glimmer3; putative YP_003007884.1 identified by Glimmer3; putative YP_003007885.1 identified by Glimmer3; putative YP_003007886.1 identified by Glimmer3; putative YP_003007887.1 identified by Glimmer3; putative YP_003007888.1 identified by Glimmer3; putative YP_003007889.1 lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing YP_003007890.1 identified by Glimmer3; putative YP_003007891.1 identified by Glimmer3; putative YP_003007892.1 identified by Glimmer3; putative YP_003007893.1 identified by Glimmer3; putative YP_003007894.1 identified by Glimmer3; putative YP_003007895.1 identified by Glimmer3; putative YP_003007896.1 identified by Glimmer3; putative YP_003007897.1 identified by Glimmer3; putative YP_003007898.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_003007899.1 identified by Glimmer3; putative YP_003007900.1 identified by Glimmer3; putative YP_003007901.1 identified by Glimmer3; putative YP_003007902.1 identified by Glimmer3; putative YP_003007903.1 identified by Glimmer3; putative YP_003007904.1 identified by Glimmer3; putative YP_003007905.1 identified by Glimmer3; putative YP_003007906.1 identified by Glimmer3; putative YP_003007907.1 identified by Glimmer3; putative YP_003007908.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_003007909.1 Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription YP_003007910.1 identified by Glimmer3; putative YP_003007911.1 identified by Glimmer3; putative YP_003007912.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase YP_003007913.1 identified by Glimmer3; putative YP_003007914.1 identified by Glimmer3; putative YP_003007915.1 identified by Glimmer3; putative YP_003007916.1 identified by Glimmer3; putative YP_003007917.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_003007918.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_003007919.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein YP_003007920.1 identified by Glimmer3; putative YP_003007921.1 identified by Glimmer3; putative YP_003007922.1 identified by Glimmer3; putative YP_003007923.1 identified by Glimmer3; putative YP_003007924.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_003007925.1 identified by Glimmer3; putative YP_003007926.1 enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation YP_003007927.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_003007928.1 identified by Glimmer3; putative YP_003007929.1 carries the fatty acid chain in fatty acid biosynthesis YP_003007930.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_003007931.1 identified by Glimmer3; putative YP_003007932.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_003007933.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_003007934.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_003007935.1 identified by Glimmer3; putative YP_003007936.1 identified by Glimmer3; putative YP_003007937.1 identified by Glimmer3; putative YP_003007938.1 identified by Glimmer3; putative YP_003007939.1 identified by Glimmer3; putative; (aons) (8-amino-7-ketopelargonate synthase) (7-keto-8-amino-pelargonic acid synthetase)(7-kap synthetase) (l-alanine--pimelyl coa ligase) YP_003007940.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_003007941.1 identified by Glimmer3; putative YP_003007942.1 identified by Glimmer3; putative YP_003007943.1 identified by Glimmer3; putative YP_003007944.1 identified by Glimmer3; putative YP_003007945.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine YP_003007946.1 identified by Glimmer3; putative YP_003007947.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_003007948.1 identified by Glimmer3; putative YP_003007949.1 identified by Glimmer3; putative YP_003007950.1 identified by Glimmer3; putative YP_003007951.1 identified by Glimmer3; putative YP_003007952.1 identified by Glimmer3; putative YP_003007953.1 identified by Glimmer3; putative YP_003007954.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_003007955.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_003007956.1 identified by Glimmer3; putative YP_003007957.1 identified by Glimmer3; putative YP_003007958.1 identified by Glimmer3; putative YP_003007959.1 identified by Glimmer3; putative YP_003007960.1 identified by Glimmer3; putative YP_003007961.1 identified by Glimmer3; putative YP_003007962.1 identified by Glimmer3; putative YP_003007963.1 identified by Glimmer3; putative YP_003007964.1 identified by Glimmer3; putative YP_003007965.1 identified by Glimmer3; putative YP_003007966.1 identified by Glimmer3; putative YP_003007967.1 identified by Glimmer3; putative YP_003007968.1 identified by Glimmer3; putative YP_003007969.1 identified by Glimmer3; putative YP_003007970.1 identified by Glimmer3; putative YP_003007971.1 identified by Glimmer3; putative YP_003007972.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_003007973.1 identified by Glimmer3; putative YP_003007974.1 identified by Glimmer3; putative YP_003007975.1 adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis YP_003007976.1 identified by Glimmer3; putative YP_003007977.1 identified by Glimmer3; putative YP_003007978.1 identified by Glimmer3; putative YP_003007979.1 identified by Glimmer3; putative YP_003007980.1 identified by Glimmer3; putative YP_003007981.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_003007982.1 identified by Glimmer3; putative YP_003007983.1 identified by Glimmer3; putative YP_003007984.1 Catalyzes the phosphorylation of UMP to UDP YP_003007985.1 identified by Glimmer3; putative YP_003007986.1 identified by Glimmer3; putative YP_003007987.1 identified by Glimmer3; putative YP_003007988.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_003007989.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_003007990.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_003007991.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_003007992.1 identified by Glimmer3; putative YP_003007993.1 identified by Glimmer3; putative YP_003007994.1 identified by Glimmer3; putative YP_003007995.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_003007996.1 identified by Glimmer3; putative YP_003007997.1 identified by Glimmer3; putative YP_003007998.1 identified by Glimmer3; putative YP_003007999.1 identified by Glimmer3; putative YP_003008000.1 identified by Glimmer3; putative YP_003008001.1 identified by Glimmer3; putative YP_003008002.1 identified by Glimmer3; putative YP_003008003.1 identified by Glimmer3; putative YP_003008004.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA YP_003008005.1 Represses a number of genes involved in the response to DNA damage YP_003008006.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_003008007.1 binds single-stranded DNA at the primosome assembly site YP_003008008.1 identified by Glimmer3; putative YP_003008009.1 identified by Glimmer3; putative YP_003008010.1 identified by Glimmer3; putative YP_003008011.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_003008012.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_003008013.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_003008014.1 identified by Glimmer3; putative YP_003008015.1 identified by Glimmer3; putative YP_003008016.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_003008017.1 identified by Glimmer3; putative YP_003008018.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_003008019.1 identified by Glimmer3; putative YP_003008020.1 identified by Glimmer3; putative YP_003008021.1 identified by Glimmer3; putative YP_003008022.1 identified by Glimmer3; putative YP_003008023.1 identified by Glimmer3; putative YP_003008024.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_003008025.1 catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP YP_003008026.1 identified by Glimmer3; putative YP_003008027.1 identified by Glimmer3; putative YP_003008028.1 identified by Glimmer3; putative YP_003008029.1 identified by Glimmer3; putative YP_003008030.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_003008031.1 identified by Glimmer3; putative YP_003008032.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_003008033.1 identified by Glimmer3; putative YP_003008034.1 identified by Glimmer3; putative YP_003008035.1 identified by Glimmer3; putative YP_003008036.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_003008037.1 identified by Glimmer3; putative YP_003008038.1 identified by Glimmer3; putative YP_003008039.1 identified by Glimmer3; putative YP_003008040.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_003008041.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm YP_003008042.1 identified by Glimmer3; putative YP_003008043.1 identified by Glimmer3; putative YP_003008044.1 identified by Glimmer3; putative YP_003008045.1 Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues YP_003008046.1 identified by Glimmer3; putative YP_003008047.1 identified by Glimmer3; putative YP_003008048.1 identified by Glimmer3; putative YP_003008049.1 identified by Glimmer3; putative YP_003008050.1 identified by Glimmer3; putative YP_003008051.1 identified by Glimmer3; putative YP_003008052.1 identified by Glimmer3; putative YP_003008053.1 identified by Glimmer3; putative YP_003008054.1 identified by Glimmer3; putative YP_003008055.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position YP_003008056.1 identified by Glimmer3; putative YP_003008057.1 ORF-23; HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis YP_003008058.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_003008059.1 identified by Glimmer3; putative YP_003008060.1 identified by Glimmer3; putative YP_003008061.1 identified by Glimmer3; putative YP_003008062.1 identified by Glimmer3; putative YP_003008063.1 identified by Glimmer3; putative YP_003008064.1 identified by Glimmer3; putative YP_003008065.1 identified by Glimmer3; putative YP_003008066.1 identified by Glimmer3; putative YP_003008067.1 functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system YP_003008068.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_003008069.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_003008070.1 identified by Glimmer3; putative YP_003008071.1 identified by Glimmer3; putative YP_003008072.1 identified by Glimmer3; putative YP_003008073.1 identified by Glimmer3; putative YP_003008074.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_003008075.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_003008076.1 identified by Glimmer3; putative YP_003008077.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S] YP_003008078.1 identified by Glimmer3; putative; (ATP:GTP 3'-pyrophosphotransferase)(ppGpp synthetase I) ((P)ppGpp synthetase) YP_003008079.1 identified by Glimmer3; putative YP_003008080.1 identified by Glimmer3; putative YP_003008081.1 identified by Glimmer3; putative YP_003008082.1 identified by Glimmer3; putative YP_003008083.1 putative ABC transporter, membrane protein YP_003008084.1 identified by Glimmer3; putative YP_003008085.1 identified by Glimmer3; putative YP_003008086.1 identified by Glimmer3; putative YP_003008087.1 identified by Glimmer3; putative YP_003008088.1 identified by Glimmer3; putative; (pts system fructose-specific eiiccomponent) (eiic-fru) (p28) YP_003008089.1 identified by Glimmer3; putative; (pts system mannose-specific eiidcomponent) (eiid-man) (eii-m-man) YP_003008090.1 identified by Glimmer3; putative YP_003008091.1 catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate YP_003008092.1 identified by Glimmer3; putative YP_003008093.1 identified by Glimmer3; putative YP_003008094.1 identified by Glimmer3; putative YP_003008095.1 identified by Glimmer3; putative YP_003008096.1 identified by Glimmer3; putative YP_003008097.1 identified by Glimmer3; putative YP_003008098.1 identified by Glimmer3; putative YP_003008099.1 predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein YP_003008100.1 identified by Glimmer3; putative YP_003008101.1 identified by Glimmer3; putative YP_003008102.1 identified by Glimmer3; putative YP_003008103.1 identified by Glimmer3; putative YP_003008104.1 identified by Glimmer3; putative YP_003008105.1 catalyzes the formation of fumarate from aspartate YP_003008106.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein YP_003008107.1 identified by Glimmer3; putative YP_003008108.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_003008109.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_003008110.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_003008111.1 identified by Glimmer3; putative YP_003008112.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_003008113.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_003008114.1 identified by Glimmer3; putative YP_003008115.1 identified by Glimmer3; putative YP_003008116.1 identified by Glimmer3; putative YP_003008117.1 identified by Glimmer3; putative YP_003008118.1 identified by Glimmer3; putative YP_003008119.1 identified by Glimmer3; putative YP_003008120.1 identified by Glimmer3; putative YP_003008121.1 identified by Glimmer3; putative YP_003008122.1 identified by Glimmer3; putative YP_003008123.1 identified by Glimmer3; putative YP_003008124.1 identified by Glimmer3; putative YP_003008125.1 identified by Glimmer3; putative YP_003008126.1 identified by Glimmer3; putative YP_003008127.1 identified by Glimmer3; putative YP_003008128.1 identified by Glimmer3; putative YP_003008129.1 identified by Glimmer3; putative YP_003008130.1 identified by Glimmer3; putative YP_003008131.1 identified by Glimmer3; putative YP_003008132.1 identified by Glimmer3; putative YP_003008133.1 identified by Glimmer3; putative YP_003008134.1 identified by Glimmer3; putative YP_003008135.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_003008136.1 identified by Glimmer3; putative YP_003008137.1 catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome YP_003008138.1 identified by Glimmer3; putative YP_003008139.1 identified by Glimmer3; putative YP_003008140.1 identified by Glimmer3; putative YP_003008141.1 identified by Glimmer3; putative YP_003008142.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_003008143.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_003008144.1 identified by Glimmer3; putative YP_003008145.1 identified by Glimmer3; putative YP_003008146.1 identified by Glimmer3; putative YP_003008147.1 identified by Glimmer3; putative YP_003008148.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_003008149.1 identified by Glimmer3; putative; (ahas-ii)(acetohydroxy-acid synthase ii small subunit) (als-ii) YP_003008150.1 identified by Glimmer3; putative YP_003008151.1 identified by Glimmer3; putative YP_003008152.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_003008153.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_003008154.1 identified by Glimmer3; putative YP_003008155.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; this condensing enzyme differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_003008156.1 identified by Glimmer3; putative YP_003008157.1 identified by Glimmer3; putative YP_003008158.1 identified by Glimmer3; putative YP_003008159.1 identified by Glimmer3; putative; ABC-2 YP_003008160.1 identified by Glimmer3; putative YP_003008161.1 identified by Glimmer3; putative YP_003008162.1 identified by Glimmer3; putative YP_003008164.1 catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX YP_003008165.1 identified by Glimmer3; putative YP_003008166.1 identified by Glimmer3; putative YP_003008167.1 identified by Glimmer3; putative YP_003008168.1 identified by Glimmer3; putative YP_003008169.1 catalyzes the formation of NAD(+) from nicotinamide ribonucleotide YP_003008170.1 identified by Glimmer3; putative YP_003008171.1 identified by Glimmer3; putative YP_003008172.1 identified by Glimmer3; putative YP_003008173.1 identified by Glimmer3; putative YP_003008174.1 identified by Glimmer3; putative YP_003008175.1 identified by Glimmer3; putative YP_003008176.1 identified by Glimmer3; putative YP_003008177.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_003008178.1 identified by Glimmer3; putative YP_003008179.1 identified by Glimmer3; putative YP_003008180.1 cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source YP_003008181.1 identified by Glimmer3; putative YP_003008182.1 identified by Glimmer3; putative YP_003008183.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_003008184.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_003008185.1 identified by Glimmer3; putative YP_003008186.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_003008187.1 identified by Glimmer3; putative YP_003008188.1 catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate YP_003008189.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_003008190.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_003008191.1 long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors YP_003008192.1 identified by Glimmer3; putative YP_003008193.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_003008194.1 identified by Glimmer3; putative YP_003008195.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_003008196.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_003008197.1 identified by Glimmer3; putative YP_003008198.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_003008199.1 when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis YP_003008200.1 identified by Glimmer3; putative YP_003008201.1 identified by Glimmer3; putative YP_003008202.1 identified by Glimmer3; putative YP_003008203.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003008204.1 identified by Glimmer3; putative YP_003008205.1 functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era YP_003008206.1 identified by Glimmer3; putative YP_003008207.1 identified by Glimmer3; putative YP_003008208.1 identified by Glimmer3; putative YP_003008209.1 identified by Glimmer3; putative YP_003008210.1 identified by Glimmer3; putative YP_003008211.1 identified by Glimmer3; putative YP_003008212.1 part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors YP_003008213.1 identified by Glimmer3; putative YP_003008214.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_003008215.1 RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease YP_003008216.1 identified by Glimmer3; putative YP_003008217.1 identified by Glimmer3; putative YP_003008218.1 identified by Glimmer3; putative YP_003008219.1 identified by Glimmer3; putative YP_003008220.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_003008221.1 identified by Glimmer3; putative YP_003008222.1 identified by Glimmer3; putative YP_003008223.1 identified by Glimmer3; putative YP_003008224.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_003008225.1 can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates YP_003008226.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_003008227.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_003008228.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_003008229.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_003008230.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_003008231.1 binds directly to 23S ribosomal RNA YP_003008232.1 identified by Glimmer3; putative YP_003008233.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_003008234.1 identified by Glimmer3; putative YP_003008235.1 identified by Glimmer3; putative YP_003008236.1 identified by Glimmer3; putative YP_003008237.1 identified by Glimmer3; putative YP_003008238.1 identified by Glimmer3; putative YP_003008239.1 identified by Glimmer3; putative YP_003008240.1 identified by Glimmer3; putative YP_003008241.1 identified by Glimmer3; putative YP_003008242.1 identified by Glimmer3; putative YP_003008243.1 identified by Glimmer3; putative YP_003008244.1 identified by Glimmer3; putative YP_003008245.1 identified by Glimmer3; putative YP_003008246.1 identified by Glimmer3; putative YP_003008247.1 identified by Glimmer3; putative YP_003008248.1 identified by Glimmer3; putative YP_003008249.1 identified by Glimmer3; putative YP_003008250.1 identified by Glimmer3; putative YP_003008251.1 identified by Glimmer3; putative YP_003008252.1 identified by Glimmer3; putative YP_003008253.1 identified by Glimmer3; putative YP_003008254.1 identified by Glimmer3; putative YP_003008255.1 identified by Glimmer3; putative YP_003008256.1 similar to restriction enzyme BgcI alpha subunit; identified by Glimmer3; putative YP_003008257.1 similar to restriction enzyme BgcI subunit beta (S.BcgI); identified by Glimmer3; putative YP_003008258.1 identified by Glimmer3; putative YP_003008259.1 This protein performs the mismatch recognition step during the DNA repair process YP_003008260.1 facilitates an early step in the assembly of the 50S subunit of the ribosome YP_003008261.1 identified by Glimmer3; putative YP_003008262.1 identified by Glimmer3; putative YP_003008263.1 identified by Glimmer3; putative YP_003008264.1 identified by Glimmer3; putative YP_003008265.1 identified by Glimmer3; putative YP_003008266.1 identified by Glimmer3; putative YP_003008267.1 identified by Glimmer3; putative YP_003008268.1 identified by Glimmer3; putative YP_003008269.1 identified by Glimmer3; putative YP_003008270.1 identified by Glimmer3; putative YP_003008271.1 identified by Glimmer3; putative YP_003008272.1 identified by Glimmer3; putative YP_003008273.1 identified by Glimmer3; putative YP_003008274.1 identified by Glimmer3; putative YP_003008275.1 identified by Glimmer3; putative YP_003008276.1 identified by Glimmer3; putative YP_003008277.1 identified by Glimmer3; putative YP_003008278.1 identified by Glimmer3; putative YP_003008279.1 DHBP synthase; functions during riboflavin biosynthesis YP_003008280.1 identified by Glimmer3; putative YP_003008281.1 identified by Glimmer3; putative YP_003008282.1 identified by Glimmer3; putative YP_003008283.1 identified by Glimmer3; putative YP_003008284.1 identified by Glimmer3; putative YP_003008285.1 converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers YP_003008286.1 phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr YP_003008287.1 identified by Glimmer3; putative YP_003008288.1 in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis YP_003008289.1 identified by Glimmer3; putative YP_003008290.1 identified by Glimmer3; putative YP_003008291.1 ORF3; identified by Glimmer3; putative YP_003008292.1 catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs YP_003008293.1 identified by Glimmer3; putative YP_003008294.1 identified by Glimmer3; putative YP_003008295.1 identified by Glimmer3; putative YP_003008296.1 identified by Glimmer3; putative YP_003008297.1 identified by Glimmer3; putative YP_003008298.1 identified by Glimmer3; putative YP_003008299.1 identified by Glimmer3; putative YP_003008300.1 identified by Glimmer3; putative YP_003008301.1 identified by Glimmer3; putative YP_003008302.1 identified by Glimmer3; putative YP_003008303.1 identified by Glimmer3; putative YP_003008304.1 identified by Glimmer3; putative YP_003008305.1 identified by Glimmer3; putative YP_003008306.1 identified by Glimmer3; putative YP_003008307.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_003008308.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_003008309.1 identified by Glimmer3; putative YP_003008310.1 identified by Glimmer3; putative YP_003008311.1 identified by Glimmer3; putative YP_003008312.1 identified by Glimmer3; putative YP_003008313.1 identified by Glimmer3; putative YP_003008314.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_003008315.1 identified by Glimmer3; putative YP_003008316.1 identified by Glimmer3; putative YP_003008317.1 identified by Glimmer3; putative YP_003008318.1 identified by Glimmer3; putative YP_003008319.1 identified by Glimmer3; putative YP_003008320.1 identified by Glimmer3; putative YP_003008321.1 identified by Glimmer3; putative YP_003008322.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_003008323.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_003008324.1 identified by Glimmer3; putative YP_003008325.1 identified by Glimmer3; putative YP_003008326.1 identified by Glimmer3; putative YP_003008327.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_003008328.1 identified by Glimmer3; putative YP_003008329.1 identified by Glimmer3; putative YP_003008330.1 identified by Glimmer3; putative YP_003008331.1 identified by Glimmer3; putative YP_003008332.1 identified by Glimmer3; putative YP_003008333.1 identified by Glimmer3; putative YP_003008334.1 identified by Glimmer3; putative YP_003008335.1 identified by Glimmer3; putative YP_003008336.1 identified by Glimmer3; putative YP_003008337.1 identified by Glimmer3; putative YP_003008338.1 identified by Glimmer3; putative YP_003008339.1 identified by Glimmer3; putative YP_003008340.1 identified by Glimmer3; putative YP_003008342.1 identified by Glimmer3; putative YP_003008343.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_003008344.1 PliC; periplasmic lysozyme inhibitor of c-type lysozyme YP_003008345.1 identified by Glimmer3; putative YP_003008346.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_003008347.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_003008348.1 identified by Glimmer3; putative YP_003008349.1 identified by Glimmer3; putative YP_003008350.1 identified by Glimmer3; putative YP_003008351.1 identified by Glimmer3; putative YP_003008352.1 identified by Glimmer3; putative YP_003008353.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_003008354.1 catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate YP_003008355.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_003008356.1 forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein YP_003008357.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_003008358.1 identified by Glimmer3; putative YP_003008359.1 catalyzes the modification of U13 in tRNA(Glu) YP_003008360.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_003008361.1 identified by Glimmer3; putative YP_003008362.1 identified by Glimmer3; putative YP_003008363.1 identified by Glimmer3; putative YP_003008364.1 identified by Glimmer3; putative YP_003008365.1 identified by Glimmer3; putative YP_003008366.1 identified by Glimmer3; putative YP_003008367.1 identified by Glimmer3; putative YP_003008368.1 identified by Glimmer3; putative YP_003008369.1 identified by Glimmer3; putative YP_003008370.1 periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP YP_003008371.1 identified by Glimmer3; putative YP_003008372.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_003008373.1 identified by Glimmer3; putative YP_003008374.1 identified by Glimmer3; putative; (Efflux-multidrug resistance protein emrE)(Methyl viologen resistance protein C) (Ethidium resistance protein) YP_003008375.1 identified by Glimmer3; putative YP_003008376.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_003008377.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis YP_003008378.1 identified by Glimmer3; putative YP_003008379.1 identified by Glimmer3; putative YP_003008380.1 identified by Glimmer3; putative YP_003008381.1 identified by Glimmer3; putative YP_003008382.1 identified by Glimmer3; putative YP_003008383.1 identified by Glimmer3; putative YP_003008384.1 identified by Glimmer3; putative YP_003008385.1 identified by Glimmer3; putative YP_003008386.1 identified by Glimmer3; putative YP_003008387.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB YP_003008388.1 identified by Glimmer3; putative YP_003008389.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_003008390.1 identified by Glimmer3; putative; (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) (NAD(P)H-dependentdihydroxyacetone-phosphate reductase) YP_003008391.1 identified by Glimmer3; putative YP_003008392.1 identified by Glimmer3; putative YP_003008393.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_003008394.1 identified by Glimmer3; putative YP_003008395.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_003008396.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_003008397.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_003008398.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation YP_003008399.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_003008400.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_003008401.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_003008402.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_003008403.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_003008404.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_003008405.1 identified by Glimmer3; putative YP_003008406.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_003008407.1 identified by Glimmer3; putative YP_003008408.1 identified by Glimmer3; putative YP_003008409.1 identified by Glimmer3; putative YP_003008410.1 identified by Glimmer3; putative YP_003008411.1 identified by Glimmer3; putative YP_003008412.1 negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis YP_003008413.1 Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA YP_003008414.1 identified by Glimmer3; putative YP_003008415.1 catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction YP_003008416.1 identified by Glimmer3; putative YP_003008417.1 identified by Glimmer3; putative YP_003008418.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA YP_003008419.1 part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway YP_003008420.1 periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC YP_003008421.1 identified by Glimmer3; putative YP_003008422.1 identified by Glimmer3; putative YP_003008423.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_003008424.1 identified by Glimmer3; putative YP_003008425.1 identified by Glimmer3; putative YP_003008426.1 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters YP_003008427.1 identified by Glimmer3; putative; (Xaa-His dipeptidase)(X-His dipeptidase) (Beta-alanyl-histidine dipeptidase) (Carnosinase)(Cysteinylglycinase) (Peptidase D) YP_003008428.1 identified by Glimmer3; putative;(xanthine-guaninephosphoribosyltransferase) (xgprt) YP_003008429.1 flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration YP_003008430.1 identified by Glimmer3; putative YP_003008431.1 determines N-hexane tolerance and is involved in outer membrane permeability YP_003008432.1 identified by Glimmer3; putative; (dna-3-methyladenineglycosylase i) (3-methyladenine-dna glycosylase i, constitutive) (tagi) (dna-3-methyladenine glycosidase i) YP_003008433.1 identified by Glimmer3; putative YP_003008434.1 identified by Glimmer3; putative YP_003008435.1 identified by Glimmer3; putative YP_003008436.1 identified by Glimmer3; putative YP_003008437.1 defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly YP_003008438.1 identified by Glimmer3; putative YP_003008439.1 negatively supercoils closed circular double-stranded DNA YP_003008440.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_003008441.1 identified by Glimmer3; putative YP_003008442.1 identified by Glimmer3; putative YP_003008443.1 identified by Glimmer3; putative YP_003008444.1 identified by Glimmer3; putative YP_003008445.1 identified by Glimmer3; putative; (Gamma-glutamylputrescine oxidase) (Gamma-Glu-Put oxidase) YP_003008446.1 identified by Glimmer3; putative YP_003008447.1 identified by Glimmer3; putative YP_003008448.1 identified by Glimmer3; putative YP_003008449.1 in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs YP_003008450.1 identified by Glimmer3; putative YP_003008451.1 identified by Glimmer3; putative YP_003008452.1 identified by Glimmer3; putative YP_003008453.1 identified by Glimmer3; putative YP_003008454.1 identified by Glimmer3; putative YP_003008455.1 identified by Glimmer3; putative YP_003008456.1 identified by Glimmer3; putative YP_003008457.1 identified by Glimmer3; putative YP_003008458.1 identified by Glimmer3; putative YP_003008459.1 identified by Glimmer3; putative YP_003008460.1 identified by Glimmer3; putative YP_003008461.1 identified by Glimmer3; putative YP_003008462.1 identified by Glimmer3; putative YP_003008463.1 identified by Glimmer3; putative YP_003008464.1 identified by Glimmer3; putative YP_003008465.1 identified by Glimmer3; putative YP_003008466.1 identified by Glimmer3; putative YP_003008467.1 identified by Glimmer3; putative YP_003008468.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_003008469.1 identified by Glimmer3; putative YP_003008470.1 identified by Glimmer3; putative YP_003008471.1 identified by Glimmer3; putative YP_003008472.1 identified by Glimmer3; putative YP_003008473.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_003008474.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_003008475.1 identified by Glimmer3; putative YP_003008476.1 identified by Glimmer3; putative YP_003008477.1 identified by Glimmer3; putative YP_003008478.1 identified by Glimmer3; putative YP_003008479.1 identified by Glimmer3; putative YP_003008480.1 identified by Glimmer3; putative YP_003008481.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_003008482.1 identified by Glimmer3; putative YP_003008483.1 identified by Glimmer3; putative YP_003008484.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose YP_003008485.1 identified by Glimmer3; putative YP_003008486.1 identified by Glimmer3; putative YP_003008487.1 identified by Glimmer3; putative YP_003008488.1 identified by Glimmer3; putative YP_003008489.1 identified by Glimmer3; putative YP_003008490.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_003008491.1 identified by Glimmer3; putative YP_003008492.1 identified by Glimmer3; putative YP_003008493.1 identified by Glimmer3; putative YP_003008494.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_003008495.1 identified by Glimmer3; putative YP_003008496.1 identified by Glimmer3; putative YP_003008497.1 identified by Glimmer3; putative YP_003008498.1 identified by Glimmer3; putative YP_003008499.1 Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity YP_003008500.1 heat shock protein involved in degradation of misfolded proteins YP_003008501.1 identified by Glimmer3; putative YP_003008502.1 heat shock protein involved in degradation of misfolded proteins YP_003008503.1 identified by Glimmer3; putative YP_003008504.1 identified by Glimmer3; putative YP_003008505.1 identified by Glimmer3; putative YP_003008506.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_003008507.1 identified by Glimmer3; putative YP_003008508.1 identified by Glimmer3; putative YP_003008509.1 identified by Glimmer3; putative YP_003008510.1 identified by Glimmer3; putative YP_003008511.1 identified by Glimmer3; putative YP_003008512.1 identified by Glimmer3; putative YP_003008513.1 identified by Glimmer3; putative YP_003008514.1 identified by Glimmer3; putative YP_003008515.1 identified by Glimmer3; putative YP_003008516.1 identified by Glimmer3; putative YP_003008517.1 identified by Glimmer3; putative YP_003008518.1 identified by Glimmer3; putative YP_003008519.1 identified by Glimmer3; putative YP_003008520.1 identified by Glimmer3; putative YP_003008521.1 identified by Glimmer3; putative YP_003008522.1 identified by Glimmer3; putative YP_003008523.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_003008524.1 identified by Glimmer3; putative YP_003008525.1 identified by Glimmer3; putative YP_003008526.1 identified by Glimmer3; putative YP_003008527.1 identified by Glimmer3; putative YP_003008528.1 identified by Glimmer3; putative YP_003008529.1 part of the metNIQ transport system for methionine YP_003008530.1 Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate YP_003008533.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_003008534.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_003008535.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_003008536.1 identified by Glimmer3; putative YP_003008537.1 identified by Glimmer3; putative YP_003008538.1 identified by Glimmer3; putative YP_003008539.1 identified by Glimmer3; putative YP_003008540.1 identified by Glimmer3; putative YP_003008541.1 identified by Glimmer3; putative YP_003008542.1 identified by Glimmer3; putative YP_003008543.1 catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit YP_003008544.1 identified by Glimmer3; putative YP_003008545.1 identified by Glimmer3; putative YP_003008546.1 identified by Glimmer3; putative YP_003008547.1 identified by Glimmer3; putative YP_003008548.1 catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway YP_003008549.1 transcriptional repressor of asnA which codes for aspartate-ammonia ligase YP_003008550.1 catalyzes the formation of asparagine from aspartate and ammonia YP_003008551.1 identified by Glimmer3; putative YP_003008552.1 identified by Glimmer3; putative YP_003008553.1 identified by Glimmer3; putative YP_003008554.1 reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP YP_003008555.1 identified by Glimmer3; putative YP_003008556.1 identified by Glimmer3; putative YP_003008557.1 identified by Glimmer3; putative YP_003008558.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_003008559.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_003008560.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_003008561.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_003008562.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_003008563.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_003008564.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_003008565.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_003008566.1 identified by Glimmer3; putative YP_003008567.1 one of the stabilizing components for the large ribosomal subunit YP_003008568.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_003008569.1 identified by Glimmer3; putative YP_003008570.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_003008571.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_003008572.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_003008573.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_003008574.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_003008575.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_003008576.1 binds 5S rRNA along with protein L5 and L25 YP_003008577.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_003008578.1 late assembly protein YP_003008579.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_003008580.1 identified by Glimmer3; putative YP_003008581.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_003008582.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_003008583.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_003008584.1 is a component of the macrolide binding site in the peptidyl transferase center YP_003008585.1 identified by Glimmer3; putative YP_003008586.1 catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A YP_003008587.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_003008588.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_003008589.1 identified by Glimmer3; putative YP_003008590.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_003008591.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_003008592.1 identified by Glimmer3; putative YP_003008593.1 identified by Glimmer3; putative YP_003008594.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_003008595.1 identified by Glimmer3; putative YP_003008596.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_003008597.1 identified by Glimmer3; putative YP_003008598.1 identified by Glimmer3; putative YP_003008599.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_003008600.1 identified by Glimmer3; putative YP_003008601.1 identified by Glimmer3; putative YP_003008602.1 identified by Glimmer3; putative YP_003008603.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_003008604.1 identified by Glimmer3; putative YP_003008605.1 identified by Glimmer3; putative YP_003008606.1 identified by Glimmer3; putative YP_003008607.1 identified by Glimmer3; putative YP_003008608.1 identified by Glimmer3; putative YP_003008609.1 identified by Glimmer3; putative YP_003008610.1 identified by Glimmer3; putative YP_003008611.1 identified by Glimmer3; putative YP_003008612.1 identified by Glimmer3; putative YP_003008613.1 identified by Glimmer3; putative YP_003008614.1 identified by Glimmer3; putative YP_003008615.1 identified by Glimmer3; putative YP_003008616.1 identified by Glimmer3; putative YP_003008617.1 identified by Glimmer3; putative YP_003008618.1 identified by Glimmer3; putative YP_003008619.1 identified by Glimmer3; putative YP_003008620.1 identified by Glimmer3; putative YP_003008621.1 identified by Glimmer3; putative YP_003008622.1 identified by Glimmer3; putative YP_003008623.1 identified by Glimmer3; putative; (Deoxyadenosyl-methyltransferase)(DNA adenine methyltransferase) (M.EcoDam) YP_003008624.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_003008625.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_003008626.1 identified by Glimmer3; putative YP_003008627.1 identified by Glimmer3; putative YP_003008628.1 identified by Glimmer3; putative YP_003008629.1 identified by Glimmer3; putative YP_003008630.1 identified by Glimmer3; putative YP_003008631.1 identified by Glimmer3; putative YP_003008632.1 identified by Glimmer3; putative YP_003008633.1 catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense YP_003008634.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons YP_003008635.1 identified by Glimmer3; putative YP_003008636.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly YP_003008637.1 identified by Glimmer3; putative YP_003008638.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_003008639.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_003008640.1 required for 70S ribosome assembly YP_003008641.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_003008642.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_003008643.1 identified by Glimmer3; putative YP_003008644.1 identified by Glimmer3; putative YP_003008645.1 identified by Glimmer3; putative YP_003008646.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_003008647.1 identified by Glimmer3; putative YP_003008648.1 identified by Glimmer3; putative YP_003008649.1 identified by Glimmer3; putative YP_003008650.1 identified by Glimmer3; putative YP_003008651.1 identified by Glimmer3; putative YP_003008652.1 identified by Glimmer3; putative YP_003008653.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_003008654.1 identified by Glimmer3; putative YP_003008655.1 identified by Glimmer3; putative YP_003008656.1 identified by Glimmer3; putative YP_003008657.1 identified by Glimmer3; putative YP_003008658.1 identified by Glimmer3; putative YP_003008659.1 identified by Glimmer3; putative YP_003008660.1 responsible for the influx of magnesium ions YP_003008661.1 identified by Glimmer3; putative YP_003008662.1 identified by Glimmer3; putative YP_003008663.1 identified by Glimmer3; putative YP_003008664.1 identified by Glimmer3; putative YP_003008665.1 identified by Glimmer3; putative YP_003008666.1 identified by Glimmer3; putative YP_003008667.1 identified by Glimmer3; putative YP_003008668.1 responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA YP_003008669.1 identified by Glimmer3; putative YP_003008670.1 identified by Glimmer3; putative YP_003008671.1 identified by Glimmer3; putative YP_003008672.1 the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown YP_003008673.1 identified by Glimmer3; putative; (X-Pro aminopeptidase)(Aminopeptidase P II) (APP-II) (Aminoacylproline aminopeptidase) YP_003008674.1 identified by Glimmer3; putative YP_003008675.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_003008676.1 Essential for efficient processing of 16S rRNA YP_003008677.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_003008678.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_003008679.1 identified by Glimmer3; putative YP_003008680.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_003008681.1 functions in MreBCD complex in some organisms YP_003008682.1 identified by Glimmer3; putative YP_003008683.1 identified by Glimmer3; putative YP_003008684.1 Specifically methylates the ribose of guanosine 2251 in 23S rRNA YP_003008685.1 identified by Glimmer3; putative YP_003008686.1 identified by Glimmer3; putative YP_003008687.1 hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic YP_003008688.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_003008689.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate YP_003008690.1 identified by Glimmer3; putative YP_003008691.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_003008692.1 identified by Glimmer3; putative YP_003008693.1 identified by Glimmer3; putative YP_003008694.1 identified by Glimmer3; putative YP_003008695.1 identified by Glimmer3; putative YP_003008696.1 identified by Glimmer3; putative YP_003008697.1 identified by Glimmer3; putative YP_003008698.1 identified by Glimmer3; putative YP_003008699.1 identified by Glimmer3; putative YP_003008700.1 identified by Glimmer3; putative YP_003008701.1 identified by Glimmer3; putative YP_003008702.1 identified by Glimmer3; putative YP_003008703.1 identified by Glimmer3; putative YP_003008704.1 identified by Glimmer3; putative YP_003008705.1 identified by Glimmer3; putative YP_003008706.1 identified by Glimmer3; putative YP_003008707.1 identified by Glimmer3; putative YP_003008708.1 identified by Glimmer3; putative YP_003008709.1 identified by Glimmer3; putative YP_003008710.1 identified by Glimmer3; putative YP_003008711.1 identified by Glimmer3; putative YP_003008712.1 identified by Glimmer3; putative YP_003008713.1 identified by Glimmer3; putative YP_003008714.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria YP_003008715.1 synthesizes RNA primers at the replication forks YP_003008716.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_003008717.1 identified by Glimmer3; putative YP_003008718.1 identified by Glimmer3; putative YP_003008719.1 identified by Glimmer3; putative YP_003008720.1 identified by Glimmer3; putative YP_003008721.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_003008722.1 interacts with cell division protein FitsZ and may be required to anchor septal ring structure YP_003008723.1 putative role in sulfur assimilation YP_003008724.1 identified by Glimmer3; putative YP_003008725.1 identified by Glimmer3; putative YP_003008726.1 identified by Glimmer3; putative YP_003008727.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_003008728.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_003008729.1 identified by Glimmer3; putative YP_003008730.1 identified by Glimmer3; putative; similar to Plu3881 YP_003008731.1 catalyzes the formation of serine from O-phosphoserine YP_003008732.1 identified by Glimmer3; putative YP_003008733.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_003008734.1 identified by Glimmer3; putative YP_003008735.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_003008736.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_003008737.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_003008738.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_003008739.1 identified by Glimmer3; putative YP_003008740.1 identified by Glimmer3; putative YP_003008741.1 HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine YP_003008742.1 identified by Glimmer3; putative YP_003008743.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_003008744.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_003008745.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_003008746.1 identified by Glimmer3; putative YP_003008747.1 identified by Glimmer3; putative YP_003008748.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_003008749.1 identified by Glimmer3; putative YP_003008750.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function YP_003008751.1 identified by Glimmer3; putative YP_003008752.1 disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein YP_003008753.1 involved in regulation of intracellular pH under alkaline conditions YP_003008754.1 Multifunctional regulator of fatty acid metabolism YP_003008755.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor YP_003008756.1 identified by Glimmer3; putative YP_003008757.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis YP_003008758.1 catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA YP_003008759.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_003008760.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_003008761.1 identified by Glimmer3; putative YP_003008762.1 identified by Glimmer3; putative YP_003008763.1 identified by Glimmer3; putative YP_003008764.1 identified by Glimmer3; putative YP_003008765.1 identified by Glimmer3; putative YP_003008766.1 identified by Glimmer3; putative YP_003008767.1 identified by Glimmer3; putative