-- dump date 20240506_001635 -- class Genbank::Contig -- table contig_comment -- id comment NC_013205.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001727.1.REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldariusREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMarkREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hotREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring"REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USAREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: SporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: ThermophileREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60CREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: ThermoacidophileREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: ChemoorganotrophREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38 Pseudo Genes (multiple problems) :: 8 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38 Pseudo Genes (multiple problems) :: 8 of 38 CRISPR Arrays :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38 Pseudo Genes (multiple problems) :: 8 of 38 CRISPR Arrays :: 4 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001727.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38 Pseudo Genes (multiple problems) :: 8 of 38 CRISPR Arrays :: 4 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_013206.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001728.1.REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldariusREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMarkREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hotREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring"REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USAREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: SporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: ThermophileREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60CREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: ThermoacidophileREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: ChemoorganotrophREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38 Pseudo Genes (multiple problems) :: 8 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38 Pseudo Genes (multiple problems) :: 8 of 38 CRISPR Arrays :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38 Pseudo Genes (multiple problems) :: 8 of 38 CRISPR Arrays :: 4 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001728.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38 Pseudo Genes (multiple problems) :: 8 of 38 CRISPR Arrays :: 4 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_013207.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001729.1.REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldariusREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMarkREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hotREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring"REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USAREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: SporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: ThermophileREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60CREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: ThermoacidophileREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: ChemoorganotrophREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38 Pseudo Genes (multiple problems) :: 8 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38 Pseudo Genes (multiple problems) :: 8 of 38 CRISPR Arrays :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38 Pseudo Genes (multiple problems) :: 8 of 38 CRISPR Arrays :: 4 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001729.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38 Pseudo Genes (multiple problems) :: 8 of 38 CRISPR Arrays :: 4 ##Genome-Annotation-Data-END## COMPLETENESS: full length. NC_013208.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001730.1.REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldariusREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMarkREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hotREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring"REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USAREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: SporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: ThermophileREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60CREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: ThermoacidophileREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: ChemoorganotrophREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38 Pseudo Genes (multiple problems) :: 8 of 38REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38 Pseudo Genes (multiple problems) :: 8 of 38 CRISPR Arrays :: 4REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38 Pseudo Genes (multiple problems) :: 8 of 38 CRISPR Arrays :: 4 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001730.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083332 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446 Culture Collection ID :: DSM 446, ATCC 27009 GOLD Stamp ID :: Gi02324 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: GeneMark Isolation Site :: "Yellowstone National Park, acid hot spring" Isolation Country :: USA Latitude :: 44.376262 Longitude :: -110.690383 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Sporulation :: Sporulating Temperature Range :: Thermophile Temperature Optimum :: 60C pH :: 3 - 4 Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Phenotypes :: Thermoacidophile Energy Source :: Chemoorganotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:38:04 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 3,188 CDSs (total) :: 3,104 Genes (coding) :: 3,066 CDSs (with protein) :: 3,066 Genes (RNA) :: 84 rRNAs :: 6, 6, 6 (5S, 16S, 23S) complete rRNAs :: 6, 6, 6 (5S, 16S, 23S) tRNAs :: 62 ncRNAs :: 4 Pseudo Genes (total) :: 38 CDSs (without protein) :: 38 Pseudo Genes (ambiguous residues) :: 0 of 38 Pseudo Genes (frameshifted) :: 11 of 38 Pseudo Genes (incomplete) :: 28 of 38 Pseudo Genes (internal stop) :: 7 of 38 Pseudo Genes (multiple problems) :: 8 of 38 CRISPR Arrays :: 4 ##Genome-Annotation-Data-END## COMPLETENESS: full length.