-- dump date 20140618_194210 -- class Genbank::CDS -- table cds_note -- id note YP_740850.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_740851.1 KEGG: xoo:XOO0002 DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain YP_740852.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: sdn:Sden_0003 DNA replication and repair protein RecF YP_740853.1 KEGG: vvy:VV0014 DNA gyrase, subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II YP_740854.1 KEGG: stt:t0948 trehalose phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; sucrose-6F-phosphate phosphohydrolase YP_740855.1 PFAM: glycoside hydrolase 15-related; KEGG: csa:Csal_0235 glycoside hydrolase 15-related YP_740856.1 PFAM: glycosyl transferase, family 20; KEGG: rru:Rru_A2485 alpha,alpha-trehalose-phosphate synthase (UDP-forming) YP_740857.1 PFAM: Glucokinase; KEGG: mag:amb2112 glucokinase YP_740858.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: neu:NE1184 phospholipid and glycerol acyltransferase (from 'motifs_6.msf') YP_740859.1 TIGRFAM: histidinol-phosphate phosphatase; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: tbd:Tbd_2346 histidinol-phosphate phosphatase YP_740860.1 KEGG: tcx:Tcr_0355 glycyl-tRNA synthetase, beta subunit YP_740861.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_740862.1 KEGG: mca:MCA1677 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp YP_740863.1 KEGG: csa:Csal_0244 hypothetical protein YP_740864.1 KEGG: pae:PA5124 two-component sensor NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_740865.1 KEGG: pae:PA5125 two-component response regulator NtrC; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_740866.1 PFAM: Radical SAM domain protein; KEGG: fra:Francci3_3380 conserved hypothetical protein YP_740867.1 KEGG: pca:Pcar_2564 hypothetical protein YP_740868.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_740869.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_740870.1 PFAM: CutA1 divalent ion tolerance protein; KEGG: noc:Noc_1056 CutA1 divalent ion tolerance protein YP_740871.1 PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: tcx:Tcr_0446 protein-disulfide reductase YP_740872.1 PFAM: Redoxin domain protein; KEGG: noc:Noc_1054 thioredoxin YP_740873.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_740874.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sbo:SBO_3133 acetylCoA carboxylase, BccP subunit YP_740875.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: noc:Noc_1051 acetyl-CoA carboxylase, biotin carboxylase YP_740876.1 PFAM: YfaZ family protein; KEGG: hch:HCH_05290 hypothetical protein YP_740877.1 PFAM: protein of unknown function DUF81; KEGG: pae:PA0340 hypothetical protein YP_740878.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: noc:Noc_0390 NAD-dependent epimerase/dehydratase YP_740879.1 PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: pfl:PFL_5656 tRNA nucleotidyltransferase YP_740881.1 PFAM: aldo/keto reductase; KEGG: csa:Csal_3045 aldo/keto reductase YP_740882.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_740883.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_740884.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: csa:Csal_3147 thiamine biosynthesis protein ThiS YP_740889.1 KEGG: vch:VCA0020 hypothetical protein YP_740890.1 KEGG: vch:VCA0019 hypothetical protein YP_740891.1 PFAM: Rhs element Vgr protein; KEGG: vch:VC1416 VgrG protein YP_740892.1 PFAM: Uncharacterised conserved protein UCP028301; KEGG: vch:VCA0107 hypothetical protein YP_740893.1 PFAM: protein of unknown function DUF877; KEGG: vch:VCA0108 hypothetical protein YP_740894.1 PFAM: protein of unknown function DUF1316; KEGG: eca:ECA3443 hypothetical protein YP_740895.1 PFAM: protein of unknown function DUF879; KEGG: vch:VCA0110 hypothetical protein YP_740896.1 PFAM: protein of unknown function DUF1305; KEGG: eca:ECA3441 hypothetical protein YP_740897.1 KEGG: vch:VCA0112 FHA domain-containing protein YP_740898.1 KEGG: plu:plu0366 hypothetical protein YP_740899.1 PFAM: protein of unknown function DUF876; KEGG: vch:VCA0114 hypothetical protein YP_740900.1 KEGG: vch:VCA0115 hypothetical protein YP_740901.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: vch:VCA0117 sigma-54 dependent transcriptional regulator YP_740902.1 KEGG: yps:YPTB3627 hypothetical protein YP_740903.1 PFAM: ImpA domain protein; KEGG: vch:VCA0119 hypothetical protein YP_740904.1 PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: vch:VCA0120 IcmF-related protein YP_740905.1 PFAM: protein of unknown function DUF796; KEGG: eca:ECA2866 hypothetical protein YP_740906.1 PFAM: PAAR repeat-containing protein; KEGG: eca:ECA3478 hypothetical protein YP_740908.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_740909.1 PFAM: protein of unknown function DUF484; KEGG: noc:Noc_0317 protein of unknown function DUF484 YP_740910.1 TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase; phage integrase domain protein SAM domain protein; KEGG: pae:PA5280 site-specific recombinase Sss YP_740911.1 PFAM: regulatory protein, TetR; KEGG: dar:Daro_1527 regulatory protein, TetR YP_740912.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: eba:ebA3654 alcohol dehydrogenase YP_740913.1 heat shock protein involved in degradation of misfolded proteins YP_740914.1 heat shock protein involved in degradation of misfolded proteins YP_740915.1 PFAM: protein of unknown function DUF971; KEGG: noc:Noc_2342 protein of unknown function DUF971 YP_740916.1 TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_4117 ubiquinone/menaquinone biosynthesis methyltransferase YP_740917.1 PFAM: protein of unknown function DUF1243; KEGG: csa:Csal_0596 protein of unknown function DUF1243 YP_740918.1 TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: noc:Noc_2345 2-polyprenylphenol 6-hydroxylase YP_740919.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis YP_740920.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_740921.1 KEGG: neu:NE1700 diguanylate cyclase/phosphodiesterase domain 2 (EAL); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_740922.1 PFAM: RDD domain containing protein; KEGG: tcx:Tcr_1706 RDD YP_740923.1 PFAM: conserved hypothetical protein 245; KEGG: noc:Noc_1835 conserved hypothetical protein 245 YP_740924.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_01608 ABC-type spermidine/putrescine transport system, ATPase components YP_740925.1 PFAM: transcriptional activator domain; KEGG: sme:SMa1591 adenylate cyclase YP_740926.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: tcx:Tcr_1500 ammonium transporter YP_740927.1 PFAM: nitrogen regulatory protein P-II; KEGG: hch:HCH_06398 nitrogen regulatory protein PII YP_740928.1 PFAM: protein of unknown function DUF526; KEGG: noc:Noc_2004 protein of unknown function DUF526 YP_740929.1 KEGG: noc:Noc_2003 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_740930.1 KEGG: bbr:BB4582 cytochrome c YP_740931.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_740932.1 KEGG: noc:Noc_0305 hypothetical protein YP_740933.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_740934.1 threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway YP_740935.1 PFAM: regulatory protein, TetR; KEGG: neu:NE0300 bacterial regulatory proteins, TetR family YP_740936.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: noc:Noc_2821 membrane-bound metal-dependent hydrolase YP_740937.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: ava:Ava_2874 oxidoreductase FAD/NAD(P)-binding YP_740938.1 PFAM: major facilitator superfamily MFS_1; KEGG: psb:Psyr_3491 major facilitator superfamily YP_740940.1 KEGG: noc:Noc_2484 transcriptional activator RfaH; TIGRFAM: transcriptional activator RfaH; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein YP_740941.1 PFAM: Invasion gene expression up-regulator, SirB; KEGG: neu:NE1499 hypothetical protein YP_740942.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: hch:HCH_01736 molybdopterin biosynthesis protein MoeB YP_740943.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: hch:HCH_04383 hypothetical protein YP_740944.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: nmu:Nmul_A2676 peptidase S1 and S6, chymotrypsin/Hap YP_740945.1 TIGRFAM: PEP motif anchor-like; PFAM: protein of unknown function DUF1555; KEGG: tbd:Tbd_0194 hypothetical protein YP_740947.1 KEGG: dde:Dde_2931 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein YP_740948.1 KEGG: tbd:Tbd_2498 hypothetical protein YP_740949.1 KEGG: tbd:Tbd_2497 HPr kinase YP_740951.1 KEGG: tbd:Tbd_2495 hypothetical protein YP_740952.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mba:Mbar_A0463 ubiquinone/menaquinone biosynthesis methyltransferase YP_740953.1 KEGG: nmu:Nmul_A2513 hypothetical protein YP_740954.1 PFAM: VanZ family protein; KEGG: nmu:Nmul_A2514 VanZ like protein YP_740955.1 TIGRFAM: PEP motif anchor-like YP_740956.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: mag:amb0102 UDP-N-acetylglucosamine 2-epimerase YP_740957.1 PFAM: polysaccharide deacetylase; KEGG: noc:Noc_1967 polysaccharide deacetylase YP_740958.1 PFAM: Inorganic pyrophosphatase; KEGG: eba:ebA594 inorganic pyrophosphatase YP_740959.1 PFAM: polysaccharide deacetylase; KEGG: noc:Noc_2914 hypothetical protein YP_740960.1 KEGG: neu:NE1793 hypothetical protein YP_740961.1 KEGG: noc:Noc_2913 hypothetical protein YP_740962.1 PFAM: glycosyl transferase, family 2; KEGG: rsp:RSP_1539 glycosyl transferase, family 2 YP_740963.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: cch:Cag_1580 transposase YP_740964.1 PFAM: O-antigen polymerase; KEGG: noc:Noc_1955 O-antigen polymerase YP_740965.1 KEGG: eba:ebA4313 hypothetical protein YP_740967.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sru:SRU_0598 ABC transporter, multidrug efflux family YP_740968.1 KEGG: ana:all0589 unknown protein YP_740969.1 KEGG: ret:RHE_CH03218 galactosyltransferase YP_740970.1 PFAM: AMP-dependent synthetase and ligase; KEGG: nmu:Nmul_A2670 AMP-dependent synthetase and ligase YP_740971.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: noc:Noc_1957 Orn/DAP/Arg decarboxylase 2 YP_740972.1 PFAM: protein of unknown function DUF201; KEGG: hch:HCH_02725 predicted ATP-grasp enzyme YP_740973.1 KEGG: noc:Noc_1959 esterase/lipase/thioesterase YP_740974.1 PFAM: transposase, IS4 family protein; KEGG: eba:ebA575 transposase, IS4 family YP_740975.1 PFAM: amidinotransferase; KEGG: mbo:Mb2350c hypothetical protein YP_740976.1 TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; KEGG: bxe:Bxe_A2036 non-ribosomal peptide synthase, amino acid adenylation domain YP_740977.1 PFAM: glycosyl transferase, family 2; KEGG: eba:ebA4304 glycosyl transferase, family 2 YP_740978.1 KEGG: rfr:Rfer_0698 hypothetical protein YP_740979.1 PFAM: asparagine synthase; KEGG: noc:Noc_1965 asparagine synthase, glutamine-hydrolyzing YP_740980.1 KEGG: eba:ebA4317 CoA ligase, possible involved in capsular antigen synthesis (related to CapK protein) YP_740981.1 PFAM: glycosyl transferase, group 1; KEGG: neu:NE0795 glycosyl transferases group 1 YP_740982.1 PFAM: glycosyl transferase, group 1; KEGG: tbd:Tbd_0293 glycosyl transferase, group 1 YP_740983.1 KEGG: tbd:Tbd_0292 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase YP_740984.1 PFAM: glycosyl transferase, group 1; KEGG: dar:Daro_2407 glycosyl transferase, group 1 YP_740985.1 TIGRFAM: eight transmembrane protein EpsH; KEGG: neu:NE1797 hypothetical protein YP_740986.1 PFAM: glycosyl transferase, group 1; KEGG: tbd:Tbd_0289 glycosyl transferase group 1 YP_740987.1 KEGG: tbd:Tbd_0288 hypothetical protein YP_740988.1 PFAM: polysaccharide deacetylase; KEGG: tbd:Tbd_0287 polysaccharide deacetylase YP_740989.1 SMART: AAA ATPase; KEGG: tbd:Tbd_0285 ATPase YP_740990.1 KEGG: neu:NE1802 hypothetical protein YP_740991.1 KEGG: tbd:Tbd_0283 protein-tyrosine kinase YP_740992.1 PFAM: lipopolysaccharide biosynthesis; KEGG: tbd:Tbd_0282 polysaccharide chain length determinant protein YP_740993.1 PFAM: type IV pilus assembly PilZ YP_740994.1 KEGG: eba:ebA845 hypothetical protein YP_740995.1 KEGG: cps:CPS_4396 hypothetical protein YP_740996.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: eba:ebA7215 hypothetical protein YP_740997.1 KEGG: tbd:Tbd_0634 hypothetical protein YP_740998.1 KEGG: tbd:Tbd_0633 hypothetical protein YP_740999.1 KEGG: tbd:Tbd_0632 exporter of the RND superfamily YP_741000.1 KEGG: tbd:Tbd_0194 hypothetical protein YP_741001.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_1987 TPR repeat protein YP_741002.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: noc:Noc_1997 two component transcriptional regulator, sigma-54 specific, fis family YP_741003.1 PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: neu:NE0377 sensory transduction histidine kinase YP_741004.1 PFAM: sugar transferase; KEGG: eba:ebA40 glycosyltransferase YP_741005.1 PFAM: polysaccharide export protein; KEGG: neu:NE1805 polysaccharide export protein, outer membrane YP_741006.1 PFAM: type IV pilus assembly PilZ YP_741007.1 PFAM: protein of unknown function DUF218; KEGG: eba:ebA2301 probable transmembrane protein YP_741008.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: hch:HCH_04939 UDP-glucose 4-epimerase YP_741009.1 KEGG: dps:DP2951 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_741010.1 PFAM: Hsp33 protein; KEGG: mfa:Mfla_1108 HSP33 protein YP_741011.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_741012.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_741013.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_741014.1 functions in MreBCD complex in some organisms YP_741015.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_741016.1 PFAM: Rod shape-determining protein MreD; KEGG: pae:PA4479 rod shape-determining protein MreD YP_741017.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: pae:PA4003 penicillin-binding protein 2 YP_741018.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: ppr:PBPRA2891 rod shape-determining protein RodA YP_741019.1 TIGRFAM: lytic murein transglycosylase B; KEGG: pfl:PFL_5450 lytic murein transglycosylase B YP_741020.1 TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: csa:Csal_1548 rare lipoprotein A YP_741021.1 PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: tcx:Tcr_1635 serine-type D-Ala-D-Ala carboxypeptidase YP_741022.1 PFAM: aminotransferase, class IV; KEGG: mca:MCA0106 D-amino acid aminotransferase YP_741023.1 PFAM: protein of unknown function DUF493; KEGG: mfa:Mfla_2499 protein of unknown function DUF493 YP_741024.1 lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein YP_741025.1 PFAM: HupE/UreJ protein; KEGG: ret:RHE_PB00145 hypothetical protein YP_741026.1 PFAM: Urease accessory protein UreD; KEGG: reu:Reut_A0991 urease accessory protein UreD YP_741027.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_741028.1 KEGG: rso:RSc2033 probable urease (beta subunit) protein; TIGRFAM: urease, beta subunit; PFAM: Urease, beta subunit YP_741029.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_741030.1 involved in the assembly of the urease metallocenter; possible nickel donor YP_741031.1 PFAM: Urease accessory protein UreF; KEGG: hch:HCH_04525 urease accessory protein UreF YP_741032.1 TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K; KEGG: pha:PSHAa1762 urease accessory protein YP_741033.1 KEGG: ppu:PP4841 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein YP_741034.1 PFAM: inner-membrane translocator; KEGG: dar:Daro_1437 inner-membrane translocator YP_741035.1 PFAM: inner-membrane translocator; KEGG: pst:PSPTO4887 branched-chain amino acid ABC transporter, permease YP_741036.1 PFAM: ABC transporter related; KEGG: csa:Csal_2310 ABC transporter related YP_741037.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_2309 ABC transporter related YP_741038.1 PFAM: major facilitator superfamily MFS_1; KEGG: gme:Gmet_0333 major facilitator superfamily MFS_1 YP_741039.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: csa:Csal_2408 TRAP transporter solute receptor, TAXI family YP_741040.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: cya:CYA_0261 hypothetical protein YP_741041.1 KEGG: noc:Noc_2286 hypothetical protein YP_741042.1 PFAM: Nucleotidyl transferase; KEGG: ppu:PP0406 nucleotidyltransferase YP_741043.1 PFAM: aminoglycoside phosphotransferase; KEGG: pfl:PFL_5645 conserved hypothetical protein YP_741044.1 PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: noc:Noc_1724 organic solvent tolerance protein YP_741045.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: noc:Noc_1723 PpiC-type peptidyl-prolyl cis-trans isomerase YP_741046.1 KEGG: tbd:Tbd_2339 4-hydroxythreonine-4-phosphate dehydrogenase PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA YP_741047.1 PFAM: thiamineS protein; KEGG: aci:ACIAD1905 hypothetical protein YP_741048.1 PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_3345 major facilitator superfamily MFS_1 YP_741049.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: csa:Csal_1199 succinylglutamate desuccinylase/aspartoacylase YP_741050.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: pae:PA0066 hypothetical protein YP_741051.1 PFAM: UspA domain protein; KEGG: mbo:Mb2051c hypothetical protein YP_741053.1 PFAM: regulatory protein, TetR; KEGG: bur:Bcep18194_B0251 transcriptional regulator, TetR family YP_741054.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: csa:Csal_3112 diaminopimelate decarboxylase YP_741056.1 PFAM: phospholipase/Carboxylesterase; KEGG: pol:Bpro_3402 carboxylesterase YP_741057.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: tde:TDE1925 peptidyl-prolyl cis-trans isomerase, FKBP-type YP_741058.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: cch:Cag_0951 hypothetical protein YP_741059.1 PFAM: Polysulphide reductase, NrfD; KEGG: wsu:WS0707 molybdopterin oxidoreductase, membrane subunit YP_741060.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dvu:DVU0693 molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit YP_741061.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dsy:DSY4131 anaerobic dehydrogenase YP_741062.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sth:STH228 polyferredoxin YP_741063.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dar:Daro_2602 phosphonate-binding periplasmic protein YP_741064.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: dar:Daro_2601 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal YP_741065.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: eba:ebA6441 acetoacetate metabolism regulatory protein AtoC YP_741066.1 catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate YP_741067.1 protein associated with Co2+ and Mg2+ efflux YP_741068.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP YP_741069.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: noc:Noc_0866 N-acetylmuramoyl-L-alanine amidase, family 2 YP_741070.1 PFAM: protein of unknown function DUF255; KEGG: noc:Noc_2549 protein of unknown function DUF255 YP_741071.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: mag:amb1318 predicted transcriptional regulator YP_741072.1 PFAM: NnrS family protein; KEGG: tbd:Tbd_1409 uncharacterized protein involved in response to NO; K07234 uncharacterized protein involved in response to NO YP_741073.1 PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rba:RB13094 conserved hypothetical protein- cobalamin synthesis protein CobW YP_741074.1 TIGRFAM: regulatory protein, FmdB family; KEGG: sde:Sde_0912 hypothetical protein YP_741075.1 PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: par:Psyc_2129 possible OmpA family protein YP_741076.1 KEGG: cvi:CV1996 hypothetical protein YP_741077.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: mca:MCA1754 monooxygenase, FAD-binding YP_741078.1 KEGG: cte:CT2131 hypothetical protein YP_741079.1 KEGG: reu:Reut_A1445 cell divisionFtsK/SpoIIIE YP_741080.1 PFAM: ferredoxin-dependent glutamate synthase; KEGG: bbr:BB1970 hypothetical protein YP_741081.1 KEGG: vvy:VV0792 hypothetical protein YP_741082.1 KEGG: cne:CNK02440 hypothetical protein YP_741083.1 PFAM: DoxX family protein; KEGG: bja:bll6552 hypothetical protein YP_741084.1 PFAM: Tubulin-tyrosine ligase; KEGG: cfa:488525 similar to Tubulin tyrosine ligase-like protein 4 YP_741085.1 KEGG: xac:XAC3140 hypothetical protein YP_741086.1 PFAM: OmpA/MotB domain protein; KEGG: noc:Noc_0146 OmpA/MotB YP_741087.1 forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA YP_741088.1 TIGRFAM: TonB family protein; PFAM: TolA family protein; KEGG: noc:Noc_0144 TonB-like YP_741089.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ilo:IL1082 biopolymer transport protein YP_741090.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: mca:MCA1226 TolQ protein YP_741091.1 Phosphate acetyltransferase; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate YP_741093.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vpa:VP1251 thioredoxin reductase YP_741094.1 PFAM: Fimbrial protein pilin; KEGG: pae:PA4525 type 4 fimbrial precursor PilA YP_741095.1 PFAM: DNA polymerase, beta domain protein region; KEGG: mta:Moth_0178 DNA polymerase, beta-like region YP_741096.1 KEGG: lpp:lpp0203 hypothetical protein YP_741097.1 PFAM: Fimbrial protein pilin; KEGG: xcb:XC_1058 pilin YP_741098.1 KEGG: neu:NE1751 type-4 fimbrial pilin related signal peptide protein YP_741099.1 KEGG: csa:Csal_0486 methylation YP_741100.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: csa:Csal_0491 Tfp pilus assembly protein PilW-like protein YP_741101.1 KEGG: mtu:Rv3512 PE-PGRS family protein YP_741102.1 KEGG: psb:Psyr_4853 hypothetical protein YP_741103.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: hch:HCH_05925 sigma 54-dependent transcriptional activator containing CheY-like receiver domain YP_741105.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_741106.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate YP_741107.1 TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: CBS domain containing protein; isocitrate/isopropylmalate dehydrogenase; KEGG: pae:PA2623 isocitrate dehydrogenase YP_741108.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: pfo:Pfl_2625 hypothetical protein YP_741109.1 KEGG: pfo:Pfl_2629 hypothetical protein YP_741110.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: pfo:Pfl_2625 hypothetical protein YP_741111.1 KEGG: pfo:Pfl_2629 hypothetical protein YP_741112.1 KEGG: noc:Noc_1721 16S rRNA dimethylase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase YP_741113.1 PFAM: protein of unknown function DUF502; KEGG: pca:Pcar_2706 hypothetical protein YP_741114.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC YP_741115.1 KEGG: xcb:XC_3691 dihydrolipoamide acetyltranferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein YP_741116.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: nmu:Nmul_A0515 dihydrolipoamide dehydrogenase YP_741117.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; KEGG: xoo:XOO3644 protoporphyrinogen oxidase YP_741118.1 PFAM: protein of unknown function DUF343; KEGG: xcb:XC_1612 hypothetical protein YP_741119.1 binds and unfolds substrates as part of the ClpXP protease YP_741120.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive YP_741121.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: hch:HCH_06256 DnaK suppressor protein YP_741122.1 PFAM: metallophosphoesterase; Calcineurin phosphoesterase C-terminal domain protein; KEGG: pae:PA4969 Icc protein YP_741123.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_741124.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_741125.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mca:MCA1053 TPR domain protein YP_741126.1 PFAM: outer membrane lipoprotein LolB; KEGG: csa:Csal_1526 outer membrane lipoprotein LolB YP_741127.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_741128.1 KEGG: mca:MCA1056 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_741129.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_741130.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_741131.1 TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein, HSR1-related; Protein of unknown function DUF933; KEGG: noc:Noc_0517 GTP-binding protein, HSR1-related YP_741132.1 KEGG: noc:Noc_1326 sterol desaturase-related protein YP_741133.1 KEGG: sil:SPO0665 SlyX protein YP_741134.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: mca:MCA2487 UDP-glucose 6-dehydrogenase YP_741135.1 PFAM: phosphoglucose isomerase (PGI); KEGG: pca:Pcar_2367 glucose-6-phosphate isomerase YP_741136.1 PFAM: protein of unknown function DUF815; KEGG: nmu:Nmul_A1008 protein of unknown function DUF815 YP_741137.1 KEGG: pae:PA0504 dethiobiotin synthase; TIGRFAM: dethiobiotin synthase; PFAM: Cobyrinic acid a,c-diamide synthase YP_741138.1 PFAM: cytochrome c oxidase, subunit II; cytochrome C oxidase subunit II, transmembrane region; KEGG: mca:MCA0879 cytochrome c oxidase, subunit II YP_741139.1 PFAM: cytochrome c oxidase, subunit I; KEGG: pha:PSHAa2871 cytochrome c oxidase, subunit I YP_741140.1 PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: noc:Noc_3045 cytochrome c oxidase assembly protein CtaG/Cox11 YP_741141.1 PFAM: cytochrome c oxidase, subunit III; KEGG: xcb:XC_3901 cytochrome c oxidase subunit III YP_741142.1 KEGG: xoo:XOO4136 hypothetical protein YP_741143.1 KEGG: pae:PA0110 hypothetical protein YP_741144.1 KEGG: dar:Daro_1464 probable transmembrane protein YP_741145.1 PFAM: cytochrome oxidase assembly; KEGG: noc:Noc_3040 cytochrome oxidase assembly YP_741146.1 TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: mca:MCA0062 protoheme IX farnesyl transferase YP_741147.1 KEGG: pca:Pcar_0180 hypothetical protein YP_741148.1 KEGG: ade:Adeh_2674 hypothetical protein YP_741150.1 PFAM: VacJ family lipoprotein; KEGG: mfa:Mfla_0585 VacJ-like lipoprotein YP_741151.1 KEGG: xcb:XC_0831 hypothetical protein YP_741152.1 PFAM: FAD linked oxidase domain protein; KEGG: mag:amb3713 FAD/FMN-containing dehydrogenase YP_741153.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: dde:Dde_0590 phospholipase D/transphosphatidylase YP_741154.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: cps:CPS_4027 transporter, BCCT family YP_741155.1 PFAM: ferric-uptake regulator; KEGG: mag:amb4306 Fe2+/Zn2+ uptake regulation protein YP_741156.1 PFAM: protein of unknown function DUF88; KEGG: dps:DP0904 hypothetical protein YP_741157.1 KEGG: bha:BH1795 arsenical pump-driving ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_741158.1 KEGG: bha:BH1794 hypothetical protein YP_741159.1 PFAM: carbon starvation protein CstA; KEGG: csa:Csal_2003 carbon starvation protein CstA YP_741160.1 PFAM: UspA domain protein; KEGG: tfu:Tfu_1412 hypothetical protein YP_741161.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: mca:MCA0398 oxidoreductase, Gfo/Idh/MocA family YP_741162.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rru:Rru_A1910 cyclopropane-fatty-acyl-phospholipid synthase YP_741163.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: csa:Csal_3035 thioredoxin-related YP_741164.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: sbo:SBO_1727 Fnr YP_741165.1 PFAM: heat shock protein Hsp20; KEGG: mca:MCA2532 heat shock protein, HSP20 family YP_741167.1 PFAM: Ion transport protein; KEGG: jan:Jann_0087 ion transport protein YP_741168.1 PFAM: Heavy metal transport/detoxification protein; KEGG: tth:TTC1356 heavy metal binding protein YP_741169.1 PFAM: protein of unknown function DUF156; KEGG: ttj:TTHA1719 copper homeostasis operon regulatory protein YP_741170.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dge:Dgeo_0089 ATPase, P type cation/copper-transporter YP_741171.1 PFAM: protein of unknown function DUF1365; KEGG: rpb:RPB_2905 protein of unknown function DUF1365 YP_741172.1 catalyzes the formation of L-tryptophan from indole and L-serine YP_741173.1 PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: sme:SMc00354 hypothetical protein YP_741175.1 PFAM: SirA family protein; KEGG: nmu:Nmul_A1011 SirA-like YP_741176.1 KEGG: csa:Csal_2464 hypothetical protein YP_741177.1 SohB; periplasmic protein; member of the peptidase S49 family YP_741179.1 PFAM: AFG1-family ATPase; KEGG: hch:HCH_05300 predicted ATPase YP_741180.1 PFAM: histone deacetylase superfamily; KEGG: mca:MCA2486 histone deacetylase/AcuC/AphA family protein YP_741181.1 PFAM: Spermine synthase; KEGG: sat:SYN_01347 spermidine synthase YP_741182.1 TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: hch:HCH_06360 methionine biosynthesis protein MetW YP_741183.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine YP_741184.1 PFAM: protein of unknown function YGGT; KEGG: mca:MCA1534 YGGT family protein YP_741185.1 KEGG: noc:Noc_3002 delta 1-pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein YP_741186.1 TIGRFAM: Protein of unknown function UPF0001; PFAM: alanine racemase domain protein; KEGG: bpm:BURPS1710b_3346 conserved hypothetical protein TIGR00044 YP_741187.1 KEGG: noc:Noc_3004 pilus retraction protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_741188.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pae:PA0396 twitching motility protein PilU YP_741189.1 KEGG: noc:Noc_0363 dihydroorotate dehydrogenase electron transfer subunit YP_741190.1 TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; KEGG: mca:MCA2332 dihydroorotase YP_741191.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_741192.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_741193.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase, RNase H domain protein fold; KEGG: eca:ECA3926 Holliday junction resolvase YP_741194.1 PFAM: protein of unknown function DUF179; KEGG: noc:Noc_0368 protein of unknown function DUF179 YP_741195.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xac:XAC3104 TonB protein YP_741196.1 PFAM: Heptaprenyl diphosphate synthase component I; KEGG: dar:Daro_0068 heptaprenyl diphosphate synthase component I YP_741197.1 KEGG: tbd:Tbd_0528 hypothetical protein YP_741198.1 PFAM: ApbE family lipoprotein; KEGG: rsp:RSP_3188 ApbE family protein YP_741199.1 KEGG: hch:HCH_00547 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: protein of unknown function DUF201; glutathione synthetase domain protein; glutathione synthetase, ATP-binding; RimK domain protein ATP-grasp YP_741200.1 PFAM: response regulator receiver; KEGG: xcb:XC_1183 pilus protein YP_741201.1 PFAM: response regulator receiver; KEGG: pae:PA0409 twitching motility protein PilH YP_741202.1 PFAM: CheW domain protein; KEGG: ppu:PP4990 type IV pili signal transduction protein PilI YP_741203.1 PFAM: chemotaxis sensory transducer; KEGG: pae:PA0411 twitching motility protein PilJ YP_741204.1 PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: noc:Noc_0126 CheA signal transduction histidine kinase YP_741205.1 KEGG: xcb:XC_1190 chemosensory pili system protein ChpC YP_741206.1 PFAM: protein of unknown function DUF558; KEGG: tbd:Tbd_0155 hypothetical protein YP_741207.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_741208.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis YP_741209.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis YP_741210.1 PFAM: protein of unknown function DUF1058; SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: neu:NE2386 bacterial SH3 domain homologue YP_741211.1 PFAM: RNA methylase; conserved hypothetical protein 95; methyltransferase small; KEGG: pfl:PFL_5872 conserved hypothetical protein YP_741212.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_741213.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: tbd:Tbd_0036 thioredoxin YP_741214.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hch:HCH_00564 predicted hydrolase (HAD superfamily) YP_741215.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose YP_741216.1 PFAM: thymidylate synthase; KEGG: pae:PA0342 thymidylate synthase YP_741217.1 KEGG: tbr:Tb927.4.5120 hypothetical protein YP_741218.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_741219.1 TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone domain protein; KEGG: noc:Noc_2026 protein of unknown function DUF193 YP_741220.1 KEGG: dar:Daro_0605 riboflavin biosynthesis protein RibD:riboflavin-specific deaminase, C-terminal; TIGRFAM: riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase-like; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein YP_741221.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_741222.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: noc:Noc_2023 GTP cyclohydrolase II YP_741223.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_741224.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: noc:Noc_0803 NusB antitermination factor YP_741225.1 KEGG: son:SO3464 thiamin-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein YP_741226.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: lma:LmjF28.2160 hypothetical protein, conserved YP_741227.1 TIGRFAM: integron integrase; PFAM: phage integrase; transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2 YP_741228.1 KEGG: dps:DP0242 hypothetical protein YP_741229.1 KEGG: tdn:Tmden_0946 hypothetical protein YP_741230.1 KEGG: ilo:IL0647 hypothetical protein YP_741232.1 KEGG: ilo:IL1489 hypothetical protein YP_741233.1 PFAM: transposase, IS4 family protein; KEGG: eba:ebA575 transposase, IS4 family YP_741234.1 PFAM: phosphatidylglycerophosphatase A; KEGG: son:SO3463 phosphatidylglycerophosphatase A YP_741235.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: nmu:Nmul_A0682 ABC transporter related YP_741236.1 PFAM: Phytanoyl-CoA dioxygenase; KEGG: bcl:ABC3489 L-proline 4-hydroxylase YP_741238.1 KEGG: mca:MCA1459 tRNA-i(6)A37 modification enzyme MiaB; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; protein of unknown function UPF0004; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_741239.1 PFAM: PhoH family protein; KEGG: noc:Noc_0238 PhoH-like protein YP_741240.1 PFAM: protein of unknown function UPF0054; KEGG: xac:XAC2464 hypothetical protein YP_741241.1 PFAM: CBS domain containing protein; transporter-associated region; KEGG: noc:Noc_0240 Mg2+ and Co2+ transporter CorC YP_741242.1 TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: noc:Noc_0241 apolipoprotein N-acyltransferase YP_741243.1 PFAM: protein of unknown function DUF1451; KEGG: noc:Noc_2600 conserved hypothetical protein YbeL YP_741244.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_741245.1 KEGG: dar:Daro_0543 rare lipoprotein B YP_741246.1 KEGG: pst:PSPTO4814 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta YP_741247.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_741248.1 KEGG: noc:Noc_2661 nicotinic acid mononucleotide adenyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase YP_741249.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: csa:Csal_1543 iojap-related protein YP_741250.1 PFAM: protein of unknown function DUF163; KEGG: hin:HI0033 hypothetical protein YP_741251.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pae:PA1673 hemerythrin YP_741252.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: sde:Sde_3189 inhibitor of septum formation YP_741253.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: noc:Noc_2657 ribonuclease E and G YP_741254.1 TIGRFAM: conserved hypothetical protein; KEGG: noc:Noc_2656 conserved hypothetical protein 2099 YP_741255.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mca:MCA0381 hydrolase, carbon-nitrogen family YP_741256.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: mca:MCA0382 TldD protein YP_741257.1 PFAM: peptidase U62, modulator of DNA gyrase; KEGG: mca:MCA0383 PmbA protein YP_741258.1 KEGG: rfr:Rfer_2154 ribosomal subunit interface protein YP_741259.1 PFAM: FAD dependent oxidoreductase; KEGG: mag:amb2799 glycine/D-amino acid oxidase YP_741260.1 PFAM: protein of unknown function DUF81; KEGG: vfi:VF1119 hypothetical protein YP_741261.1 PFAM: NHL repeat containing protein; glucose sorbosone dehydrogenase; KEGG: cya:CYA_2304 glucose/sorbosone dehydrogenase YP_741262.1 KEGG: pae:PA0353 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_741263.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: mfa:Mfla_0623 hypothetical protein YP_741264.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: vpa:VP0112 methyltransferase-related protein YP_741265.1 KEGG: sil:SPO2248 DnaK suppressor protein YP_741266.1 PFAM: Appr-1-p processing domain protein; KEGG: sru:SRU_0547 Appr-1-p processing enzyme family protein YP_741267.1 PFAM: dihydrofolate reductase region; KEGG: bmb:BruAb1_1393 FolA, dihydrofolate reductase YP_741268.1 PFAM: LrgB family protein; KEGG: csa:Csal_1794 LrgB-like protein YP_741269.1 PFAM: LrgA family protein; KEGG: csa:Csal_1793 LrgA YP_741270.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: csa:Csal_2578 HAD-superfamily subfamily IB, PSPase-like protein YP_741271.1 hydrolyzes diadenosine polyphosphate YP_741272.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: ppu:PP5145 phosphoenolpyruvate-protein phosphotransferase PtsP YP_741273.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: aci:ACIAD3328 regulatory or redox component complexing with Bfr, in iron storage and mobility (Bfd) YP_741274.1 TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: cvi:CV3399 bacterioferritin YP_741275.1 PFAM: conserved hypothetical protein 701; KEGG: noc:Noc_0228 conserved hypothetical protein 701 YP_741276.1 PFAM: Redoxin domain protein; KEGG: tbd:Tbd_2431 thioredoxin YP_741277.1 PFAM: Cl- channel, voltage-gated family protein; KEGG: noc:Noc_0358 Cl-channel, voltage gated YP_741278.1 KEGG: hch:HCH_06245 N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region YP_741279.1 essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors YP_741280.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_741281.1 PFAM: peptidase M23B; KEGG: pae:PA0667 hypothetical protein YP_741282.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_741283.1 catalyzes the removal of amino acids from the N termini of peptides YP_741284.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11 domain protein; KEGG: xcb:XC_4026 biotin acetyl-CoA-carboxylase synthetase YP_741285.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_741287.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: mag:amb3725 poly(3-hydroxyalkanoate) synthetase YP_741288.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_741289.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_741290.1 KEGG: noc:Noc_2336 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein YP_741291.1 PFAM: ribosomal protein L11; KEGG: csa:Csal_0410 ribosomal protein L11 YP_741292.1 PFAM: ribosomal protein L1; KEGG: noc:Noc_2334 ribosomal protein L1 YP_741293.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_741294.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_741295.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_741296.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_741297.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_741298.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_741299.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_741300.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_741301.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_741302.1 PFAM: ribosomal protein L3; KEGG: ssn:SSO_3461 50S ribosomal subunit protein L3 YP_741303.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_741304.1 PFAM: Ribosomal protein L25/L23; KEGG: pha:PSHAa0146 50S ribosomal protein L23 YP_741305.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_741306.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: pae:PA4259 30S ribosomal protein S19 YP_741307.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_741308.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_741309.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_741310.1 one of the stabilizing components for the large ribosomal subunit YP_741311.1 PFAM: ribosomal protein S17; KEGG: ppu:PP0463 ribosomal protein S17 YP_741312.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: dar:Daro_0329 ribosomal protein L14, bacterial and organelle form YP_741313.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_741314.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_741315.1 PFAM: ribosomal protein S14; KEGG: csa:Csal_0434 ribosomal protein S14 YP_741316.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_741317.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_741318.1 binds 5S rRNA along with protein L5 and L25 YP_741319.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_741320.1 PFAM: ribosomal protein L30; KEGG: tcx:Tcr_0313 ribosomal protein L30 YP_741321.1 late assembly protein YP_741322.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_741323.1 PFAM: ribosomal protein L36; KEGG: ilo:IL1895 ribosomal protein L36 YP_741324.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_741325.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_741326.1 PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: csa:Csal_0445 ribosomal protein S4 YP_741327.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_741328.1 PFAM: ribosomal protein L17; KEGG: ilo:IL1890 ribosomal protein L17 YP_741329.1 PFAM: protein of unknown function DUF62; KEGG: rru:Rru_A1812 protein of unknown function DUF62 YP_741330.1 KEGG: mag:amb4558 hypothetical protein YP_741331.1 catalyzes the oxidation of malate to oxaloacetate YP_741332.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: pca:Pcar_0430 lipase YP_741333.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: bur:Bcep18194_B3173 tartrate dehydrogenase YP_741334.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: son:SO0541 metallo-beta-lactamase YP_741335.1 PFAM: aminotransferase class-III; KEGG: sco:SCO7034 aminotransferase (fragment) YP_741336.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: noc:Noc_0914 phosphatidylethanolamine N-methyltransferase YP_741337.1 TIGRFAM: conserved hypothetical protein; KEGG: mlo:mlr9078 hypothetical protein YP_741338.1 KEGG: mlo:mlr9079 hypothetical protein YP_741339.1 PFAM: outer membrane efflux protein; KEGG: bur:Bcep18194_B2765 outer membrane efflux protein YP_741340.1 PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: bur:Bcep18194_B2764 multicopper oxidase, type 3 YP_741341.1 PFAM: copper resistance protein CopC; KEGG: ilo:IL1233 copper resistance protein YP_741342.1 PFAM: copper resistance D domain protein; KEGG: pha:PSHAb0008 copper export protein YP_741343.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: cef:CE0257 restriction enzyme subunit M YP_741344.1 PFAM: restriction modification system DNA specificity domain; KEGG: mth:MTH941 type I restriction modification system, subunit S YP_741345.1 KEGG: mhu:Mhun_2961 protein of unknown function DUF262 YP_741346.1 KEGG: ilo:IL1614 hypothetical protein YP_741347.1 PFAM: Appr-1-p processing domain protein; KEGG: ppu:PP5129 hypothetical protein YP_741348.1 KEGG: cef:CE0259 hypothetical protein; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD/DEAH box helicase domain protein YP_741349.1 PFAM: protein of unknown function DUF45; KEGG: fra:Francci3_4010 protein of unknown function DUF45 YP_741350.1 KEGG: psb:Psyr_3725 ATPas YP_741352.1 KEGG: eba:ebA5435 conserved hypothetical protein, probable DNA/RNA helicase YP_741353.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: mca:MCA0835 fic family protein YP_741355.1 PFAM: Redoxin domain protein; KEGG: csa:Csal_2593 thiol:disulfide interchange protein YP_741356.1 TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: mca:MCA0386 2'-5' RNA ligase YP_741357.1 PFAM: protein of unknown function DUF336; KEGG: bmb:BruAb1_1757 hypothetical protein YP_741358.1 KEGG: pfo:Pfl_1631 hypothetical protein YP_741359.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_741360.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_741361.1 KEGG: hch:HCH_01907 hypothetical protein YP_741362.1 PFAM: Chromosomal replication initiator, DnaA; KEGG: csa:Csal_2110 chromosomal replication initiator, DnaA YP_741363.1 KEGG: rso:RSc1557 probable transmembrane protein YP_741364.1 KEGG: noc:Noc_0187 flavodoxin/nitric oxide synthase YP_741365.1 TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: lpp:lpp0698 hypothetical protein YP_741366.1 PFAM: acylphosphatase; KEGG: hch:HCH_04535 acylphosphatase YP_741367.1 PFAM: cytochrome c, class I; KEGG: noc:Noc_3050 cytochrome c, class I YP_741368.1 PFAM: cytochrome c, class I; KEGG: noc:Noc_3049 cytochrome c, class I YP_741369.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: aba:Acid345_4330 protein serine/threonine phosphatases YP_741370.1 KEGG: dar:Daro_1971 protein of unknown function DUF52 YP_741372.1 PFAM: protein of unknown function DUF59; KEGG: xac:XAC0926 hypothetical protein YP_741373.1 PFAM: glutaredoxin; KEGG: psb:Psyr_2639 hypothetical protein YP_741374.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tbd:Tbd_1110 conserved hypothetical protein containing TPR repeat YP_741375.1 KEGG: tcx:Tcr_0270 hypothetical protein YP_741376.1 PFAM: GCN5-related N-acetyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: hch:HCH_04040 predicted amidohydrolase YP_741377.1 PFAM: surface antigen (D15); KEGG: pfo:Pfl_3647 surface antigen (D15) YP_741378.1 PFAM: protein of unknown function DUF490; KEGG: spt:SPA4230 hypothetical protein YP_741379.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: mfa:Mfla_2045 NAD-dependent epimerase/dehydratase YP_741380.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dge:Dgeo_2234 tRNA (guanosine-2'-O-)-methyltransferase YP_741381.1 KEGG: ilo:IL2540 hypothetical protein YP_741382.1 PFAM: Lytic transglycosylase, catalytic; KEGG: hch:HCH_04774 soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains) YP_741383.1 TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: csa:Csal_2139 prolyl-tRNA synthetase YP_741384.1 KEGG: rme:Rmet_6140 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_741385.1 KEGG: rme:Rmet_6141 hypothetical protein YP_741386.1 KEGG: vvu:VV20031 predicted membrane protein YP_741387.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_741388.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_741390.1 PFAM: protein of unknown function DUF107; KEGG: tfu:Tfu_2226 integral membrane protein YP_741393.1 TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: noc:Noc_2517 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_741394.1 PFAM: peptidase M48, Ste24p; KEGG: noc:Noc_1572 peptidase M48, Ste24p YP_741395.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_741396.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: rme:Rmet_1397 phage SPO1 DNA polymerase-related protein YP_741397.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: xcv:XCV3688 acetyltransferase YP_741398.1 KEGG: pfo:Pfl_3109 hypothetical protein YP_741399.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_741400.1 PFAM: GCN5-related N-acetyltransferase; KEGG: reu:Reut_B3997 GCN5-related N-acetyltransferase YP_741401.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: noc:Noc_0288 DNA polymerase III chi subunit, HolC YP_741402.1 PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: nmu:Nmul_A0746 leucyl aminopeptidase YP_741403.1 PFAM: permease YjgP/YjgQ family protein; KEGG: hch:HCH_01933 predicted permease YP_741404.1 PFAM: permease YjgP/YjgQ family protein; KEGG: noc:Noc_1909 permease YjgP/YjgQ YP_741405.1 PFAM: RDD domain containing protein; KEGG: tbd:Tbd_1995 transmembrane protein YP_741406.1 TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: mca:MCA2312 polyA polymerase YP_741407.1 KEGG: noc:Noc_0884 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK YP_741408.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_741409.1 KEGG: ppu:PP4700 pantoate--beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_741410.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_741411.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: pae:PA4950 hypothetical protein YP_741412.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: noc:Noc_0339 hypothetical protein YP_741413.1 PFAM: protein of unknown function UPF0079; KEGG: sgl:SG0333 hypothetical protein YP_741414.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: noc:Noc_0337 N-acetylmuramoyl-L-alanine amidase YP_741415.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase domain protein domain protein; DNA mismatch repair protein, C-terminal domain protein; KEGG: pae:PA4946 DNA mismatch repair protein MutL YP_741416.1 KEGG: pfo:Pfl_0522 tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_741417.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: xfa:XF0089 host factor-I protein YP_741418.1 PFAM: GTP-binding protein, HSR1-related; KEGG: pfo:Pfl_0524 GTP-binding protein, HSR1-like YP_741419.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: noc:Noc_2588 HflK-like protein YP_741420.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: tcx:Tcr_1091 HflC protein YP_741421.1 Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_741422.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_741423.1 PFAM: 17 kDa surface antigen; KEGG: lpp:lpp0805 hypothetical protein YP_741424.1 KEGG: mca:MCA1976 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein YP_741425.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: sdn:Sden_0512 RNA methyltransferase TrmH, group 3 YP_741426.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_741427.1 PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pha:PSHAa2441 primosomal replication protein N YP_741428.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_741429.1 KEGG: pfo:Pfl_0536 hypothetical protein YP_741430.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_741431.1 KEGG: nfa:nfa55760 replicative DNA helicase; TIGRFAM: Protein splicing (intein) site; PFAM: helix-turn-helix domain protein; DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: Hedgehog/intein hint domain protein YP_741432.1 KEGG: pae:PA5302 catabolic alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_741433.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_741434.1 PFAM: type IV pilus assembly PilZ; KEGG: ade:Adeh_2982 hypothetical protein YP_741435.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_741436.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_741437.1 PFAM: porin, Gram-negative type; KEGG: tbd:Tbd_0448 outer membrane protein (porin) YP_741438.1 PFAM: porin, Gram-negative type; KEGG: tbd:Tbd_0448 outer membrane protein (porin) YP_741439.1 TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: ilo:IL1804 glutaredoxin-related protein YP_741440.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_741441.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_741442.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein YP_741443.1 PFAM: protein of unknown function DUF488; KEGG: gme:Gmet_0156 protein of unknown function DUF488 YP_741444.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sme:SMa1195 hypothetical protein YP_741445.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_741446.1 PFAM: peptidase S16, lon domain protein; KEGG: dar:Daro_0066 peptidase S16, lon N-terminal YP_741447.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: pae:PA4019 probable aromatic acid decarboxylase YP_741448.1 TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pae:PA4020 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase YP_741449.1 KEGG: mca:MCA1366 hypothetical protein YP_741450.1 PFAM: Inorganic pyrophosphatase; KEGG: tbd:Tbd_1652 inorganic pyrophosphatase YP_741452.1 TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; KEGG: pae:PA4850 ribosomal protein L11 methyltransferase YP_741453.1 KEGG: pst:PSPTO4863 hypothetical protein YP_741454.1 PFAM: helix-turn-helix, Fis-type; KEGG: sgl:SG0150 DNA-binding protein fis YP_741455.1 KEGG: tcx:Tcr_0439 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme; MGS domain protein YP_741456.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_741457.1 TIGRFAM: phasin family protein; KEGG: csa:Csal_2464 hypothetical protein YP_741458.1 PFAM: RNP-1 like RNA-binding protein; KEGG: dvu:DVU2215 RNA-binding protein YP_741459.1 PFAM: protein of unknown function DUF583; KEGG: tcx:Tcr_0799 protein of unknown function DUF583 YP_741460.1 PFAM: peptidase M23B; KEGG: tcx:Tcr_0798 peptidase M23B YP_741462.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU0913 ABC transporter, ATP-binding protein YP_741463.1 KEGG: mag:amb4155 uncharacterized membrane-anchored protein conserved in bacteria YP_741464.1 PFAM: Fmu (Sun) domain protein; KEGG: hma:rrnAC0628 tRNA and rRNA cytosine-C5-methylase YP_741466.1 PFAM: Auxin Efflux Carrier; KEGG: csa:Csal_1038 auxin efflux carrier YP_741467.1 PFAM: protein of unknown function UPF0074; Rhodanese domain protein; regulatory protein, ArsR; KEGG: bur:Bcep18194_B2905 transcriptional regulator, ArsR family YP_741468.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bps:BPSS2121 cysteine desulfurase YP_741469.1 PFAM: DsrE family protein; KEGG: rfr:Rfer_0463 DsrE-like protein YP_741470.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gvi:gll2421 hypothetical protein YP_741471.1 PFAM: Bile acid:sodium symporter; KEGG: gsu:GSU1411 sodium/bile acid symporter family protein YP_741472.1 PFAM: KaiC domain protein; SMART: AAA ATPase; KEGG: noc:Noc_1328 KaiC YP_741473.1 KEGG: noc:Noc_1329 response regulator receiver YP_741474.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: noc:Noc_1330 diguanylate cyclase/phosphodiesterase YP_741475.1 PFAM: cyclic nucleotide-binding; KEGG: rru:Rru_A1622 transcriptional regulator, Crp/Fnr family YP_741476.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: cte:CT0493 hypothetical protein YP_741477.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: tth:TTC0155 thiosulfate reductase precursor YP_741478.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: eba:ebA1012 molybdenum enzyme of unknown function, medium subunit YP_741479.1 KEGG: dde:Dde_0680 formate dehydrogenase gamma subunit YP_741480.1 PFAM: Auxin Efflux Carrier; KEGG: pol:Bpro_4280 auxin efflux carrier YP_741481.1 PFAM: phage integrase; KEGG: pol:Bpro_0966 phage integrase YP_741482.1 PFAM: Prophage CP4-57 regulatory; KEGG: dar:Daro_2246 prophage CP4-57 regulatory YP_741483.1 KEGG: bme:BMEI1696 hypothetical membrane spanning protein YP_741486.1 KEGG: eba:ebA809 hypothetical protein YP_741488.1 TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: sil:SPO2261 major capsid protein, HK97 family YP_741490.1 KEGG: pst:PSPTO3852 hypothetical protein YP_741491.1 KEGG: pst:PSPTO3852 hypothetical protein YP_741492.1 PFAM: Peptidoglycan-binding LysM YP_741493.1 KEGG: pst:PSPTO3850 hypothetical protein YP_741494.1 PFAM: Rhs element Vgr protein; KEGG: eca:ECA4142 RHS accessory genetic element YP_741495.1 PFAM: outer membrane efflux protein; KEGG: gme:Gmet_1650 outer membrane efflux protein YP_741496.1 PFAM: acriflavin resistance protein; KEGG: sth:STH3276 AcrB family membrane transport protein YP_741497.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: syf:Synpcc7942_1870 secretion protein HlyD YP_741498.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: tcx:Tcr_0186 K+ transporter trk YP_741499.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_741500.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: noc:Noc_1406 cation transport ATPase YP_741501.1 the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli YP_741502.1 KEGG: chy:CHY_1194 PII family protein YP_741503.1 PFAM: protein of unknown function DUF1538; KEGG: wsu:WS0013 hypothetical protein YP_741504.1 KEGG: wsu:WS0015 hypothetical protein YP_741505.1 PFAM: CBS domain containing protein; KEGG: wsu:WS0014 hypothetical protein YP_741506.1 PFAM: Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: mca:MCA2850 hypothetical protein YP_741507.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tth:TTC0284 pleiotropic regulatory protein YP_741508.1 catalyzes the formation of 2-oxoglutarate from isocitrate YP_741509.1 KEGG: cvi:CV1033 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_741510.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_4149 periplasmic sensor signal transduction histidine kinase YP_741511.1 KEGG: pol:Bpro_4148 hypothetical protein YP_741512.1 KEGG: pol:Bpro_4151 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: PAS domain containing protein; Exonuclease YP_741513.1 PFAM: response regulator receiver; KEGG: pol:Bpro_4150 response regulator receiver domain protein (CheY-like) YP_741514.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase KEGG: vpa:VPA0075 hypothetical protein YP_741515.1 PFAM: Na+/solute symporter; KEGG: csa:Csal_2927 Na+/solute symporter YP_741516.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mac:MA1362 O-linked GlcNAc transferase YP_741517.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_741518.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pae:PA4726 probable two-component response regulator YP_741519.1 KEGG: pfo:Pfl_4807 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_741520.1 PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: cvi:CV3433 glutamyl-tRNA synthetase YP_741521.1 KEGG: mca:MCA0562 hypothetical protein YP_741522.1 PFAM: GTP cyclohydrolase I; KEGG: mfa:Mfla_1400 GTP cyclohydrolase I YP_741523.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: pae:PA1527 chromosome segregation protein YP_741524.1 TIGRFAM: cell division protein ZipA; PFAM: ZipA, C-terminal FtsZ-binding region; KEGG: ilo:IL1701 secreted cell division protein YP_741525.1 KEGG: reu:Reut_A1886 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; NAD-dependent DNA ligase; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; SMART: Helix-hairpin-helix DNA-binding, class 1 YP_741526.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: pae:PA4959 hypothetical protein YP_741527.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: xcb:XC_1842 hypothetical protein YP_741528.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_741529.1 PFAM: tRNA synthetase, class II (D, K and N); KEGG: vch:VC2655 lysyl-tRNA synthetase-related protein YP_741530.1 KEGG: tbd:Tbd_1102 hypothetical protein YP_741531.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: mca:MCA0359 PHP domain protein YP_741532.1 catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA YP_741533.1 KEGG: tbd:Tbd_0085 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and response regulator receiver modulation; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_741534.1 KEGG: rfr:Rfer_2486 histidine kinase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; HDIG domain protein; SMART: metal-dependent phosphohydrolase, HD region YP_741535.1 KEGG: tbd:Tbd_1191 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and response regulator receiver modulation; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_741537.1 KEGG: noc:Noc_0612 exodeoxyribonuclease VII; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type YP_741538.1 PFAM: protein of unknown function DUF1295; KEGG: nar:Saro_0560 protein of unknown function DUF1295 YP_741539.1 KEGG: rru:Rru_A2723 rubrerythrin YP_741540.1 PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: rru:Rru_A2722 2-oxoglutarate synthase, beta subunit YP_741541.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rru:Rru_A2721 2-oxoglutarate synthase, alpha subunit YP_741542.1 PFAM: flagellin domain protein; KEGG: lpn:lpg1340 flagellin YP_741543.1 TIGRFAM: methyltransferase FkbM family; KEGG: csa:Csal_1986 sulfotransferase YP_741544.1 PFAM: flagellin domain protein; KEGG: noc:Noc_2367 flagellin YP_741545.1 PFAM: flagellar protein FlaG protein; KEGG: dar:Daro_0783 flagellar protein FlaG protein YP_741546.1 PFAM: flagellar protein FlaG protein; KEGG: gsu:GSU3015 flagellin FlaG YP_741547.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: neu:NE1595 flagellar hook-associated protein 2 YP_741548.1 PFAM: flagellar protein FliS; KEGG: noc:Noc_2364 flagellar protein FliS YP_741549.1 KEGG: plu:plu1951 flagellar protein FliT YP_741550.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: noc:Noc_2362 sigma-54 specific, transcriptional regulator, fis family YP_741551.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: hch:HCH_05196 sigma 54-dependent transcriptional activator containing CheY-like receiver domain YP_741552.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: noc:Noc_2360 flagellar hook-basal body complex protein FliE YP_741553.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; KEGG: noc:Noc_2359 flagellar FliF M-ring protein YP_741554.1 PFAM: flagellar motor switch protein FliG; KEGG: xcb:XC_2261 flagellar protein YP_741555.1 PFAM: flagellar assembly protein FliH; KEGG: noc:Noc_2357 flagellar assembly protein FliH YP_741556.1 KEGG: noc:Noc_2356 flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase YP_741557.1 TIGRFAM: flagellar export protein FliJ; KEGG: ppu:PP4365 flagellar protein FliJ YP_741558.1 PFAM: flagellar hook-length control protein; KEGG: pae:PA1441 flagellar hook-length control protein FliK YP_741559.1 PFAM: peptidase M48, Ste24p; HtpX domain protein; KEGG: nmu:Nmul_A1034 peptidase M48, Ste24p YP_741560.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: hch:HCH_05375 permease of the drug/metabolite transporter (DMT) superfamily YP_741561.1 PFAM: BolA family protein; KEGG: mca:MCA1644 BolA protein YP_741562.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity YP_741563.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: pfo:Pfl_1488 SUA5/YciO/YrdC/YwlC YP_741564.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_741565.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: ppu:PP4498 segregation and condensation protein A YP_741566.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: mca:MCA2206 segregation and condensation protein B YP_741568.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gvi:glr1369 hypothetical protein YP_741569.1 with SufCD activates cysteine desulfurase SufS YP_741570.1 KEGG: noc:Noc_2489 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase YP_741571.1 TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: csa:Csal_1235 FeS assembly protein SufD YP_741572.1 TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gvi:glr1373 probable aminotransferase YP_741573.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: ade:Adeh_0847 SUF system FeS assembly protein YP_741574.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mca:MCA2814 efflux transporter, RND family, MFP subunit YP_741575.1 PFAM: acriflavin resistance protein; KEGG: dde:Dde_0670 transporter, AcrB/D/F family YP_741576.1 KEGG: dde:Dde_0673 glycine betaine/L-proline transport ATP binding subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase YP_741577.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_1902 binding-protein-dependent transport systems inner membrane component YP_741578.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: csa:Csal_3102 substrate-binding region of ABC-type glycine betaine transport system YP_741580.1 KEGG: tcx:Tcr_0552 lipoprotein YP_741581.1 PFAM: ferrochelatase; KEGG: noc:Noc_1545 ferrochelatase YP_741582.1 KEGG: bja:blr7315 hypothetical protein YP_741583.1 PFAM: multiple resistance and pH regulation protein F; KEGG: noc:Noc_1286 multiple resistance and pH regulation protein F YP_741584.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_741585.1 KEGG: bja:blr7318 hypothetical protein YP_741586.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: noc:Noc_1282 NADH-ubiquinone oxidoreductase, chain 4L YP_741587.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1281 NADH dehydrogenase (quinone) YP_741588.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1280 NADH dehydrogenase (quinone) YP_741589.1 PFAM: NUDIX hydrolase; KEGG: dge:Dgeo_1510 NUDIX hydrolase YP_741590.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_741591.1 PFAM: major facilitator superfamily MFS_1; KEGG: wsu:WS1365 transport protein YP_741592.1 PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: dar:Daro_0993 alpha/beta hydrolase fold:poly-beta-hydroxybutyrate polymerase, N-terminal YP_741593.1 PFAM: Silent information regulator protein Sir2; KEGG: transcriptional regulator, Sir2 family YP_741594.1 PFAM: Radical SAM domain protein; KEGG: noc:Noc_0590 radical SAM domain protein YP_741595.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dvu:DVU1037 mercuric reductase YP_741596.1 KEGG: lpn:lpg0596 hypothetical protein YP_741597.1 KEGG: sil:SPO1611 hypothetical protein YP_741598.1 KEGG: noc:Noc_0587 hypothetical protein YP_741599.1 PFAM: glycosyl transferase, family 2; KEGG: eba:ebA1112 conserved hypothetical protein, predicted glycosyl transferase 2 YP_741600.1 PFAM: Rhodanese domain protein; regulatory protein, ArsR; KEGG: bps:BPSS2118 ArsR family transcriptional regulator YP_741601.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rubredoxin-type Fe(Cys)4 protein; KEGG: tcx:Tcr_0037 rubredoxin-type Fe(Cys)4 protein YP_741603.1 KEGG: nmu:Nmul_A1709 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_741604.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE1 domain protein; KEGG: tbd:Tbd_0636 diguanylate cyclase (GGDEF domain) YP_741605.1 PFAM: regulatory protein, MerR; KEGG: noc:Noc_1147 transcriptional regulatory protein, MerR family YP_741606.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_741607.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_741608.1 KEGG: pae:PA2740 phenylalanyl-tRNA synthetase, alpha-subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase, class IIc; aminoacyl tRNA synthetase, class II domain protein YP_741609.1 TIGRFAM: ribosomal protein L20; KEGG: hch:HCH_04576 ribosomal protein L20 YP_741610.1 PFAM: ribosomal protein L35; KEGG: noc:Noc_1142 50S ribosomal protein L35 YP_741611.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: noc:Noc_1141 initiation factor 3 YP_741612.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_741613.1 TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: ppr:PBPRA1106 hypothetical protein YP_741614.1 KEGG: csa:Csal_1880 hypothetical protein YP_741615.1 PFAM: protein of unknown function DUF785; KEGG: csa:Csal_1879 protein of unknown function DUF785 YP_741616.1 PFAM: 20S proteasome, A and B subunits; KEGG: mca:MCA2055 hypothetical protein YP_741617.1 KEGG: hch:HCH_03595 hypothetical protein YP_741618.1 PFAM: protein of unknown function DUF403; KEGG: hch:HCH_00984 hypothetical protein YP_741619.1 PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: mca:MCA2056 hypothetical protein YP_741620.1 PFAM: transglutaminase domain protein; KEGG: hch:HCH_03352 transglutaminase-like enzyme, cysteine protease YP_741621.1 PFAM: Spore coat U domain protein; KEGG: rfe:RF_0707 hypothetical protein YP_741622.1 PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: rso:RSc2693 outer membrane usher transmembrane protein YP_741623.1 KEGG: rso:RSc2694 pili assembly chaperone transmembrane protein YP_741624.1 PFAM: Spore coat U domain protein; KEGG: ade:Adeh_3602 spore coat U YP_741625.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: tdn:Tmden_0279 TonB-dependent receptor YP_741626.1 KEGG: dar:Daro_2956 cytochrome c biogenesis protein, transmembrane region YP_741627.1 KEGG: tdn:Tmden_0275 polyferredoxin-like YP_741628.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tdn:Tmden_0274 4Fe-4S ferredoxin, iron-sulfur binding YP_741629.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: tdn:Tmden_0273 2-hydroxyglutaryl-CoA dehydratase, D-component YP_741630.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: tdn:Tmden_0272 CoA enzyme activase YP_741631.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_741632.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: nar:Saro_1757 pyruvate flavodoxin/ferredoxin oxidoreductase-like YP_741633.1 PFAM: phage integrase; KEGG: vvy:VV1777 integrase YP_741635.1 KEGG: ppr:PBPRB1439 hypothetical protein YP_741639.1 TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: sil:SPO2261 major capsid protein, HK97 family YP_741640.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: bbr:BB2925 capsular polysaccharide biosynthesis protein YP_741641.1 KEGG: hch:HCH_02378 hypothetical protein YP_741642.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rso:RSp1019 low molecular weight protein-tyrosine-phosphatase YP_741643.1 PFAM: polysaccharide export protein; KEGG: neu:NE2279 polysaccharide export protein YP_741644.1 PFAM: lipopolysaccharide biosynthesis; KEGG: ade:Adeh_4274 tyrosine kinase YP_741645.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: son:SO3171 polysaccharide biosynthesis protein YP_741646.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: psb:Psyr_3636 polysaccharide biosynthesis protein CapD YP_741647.1 TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: pae:PA4285 exodeoxyribonuclease V gamma chain YP_741648.1 TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: pfl:PFL_0741 exodeoxyribonuclease V, beta subunit YP_741649.1 TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: pfl:PFL_0742 exodeoxyribonuclease V, alpha subunit YP_741650.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_741651.1 KEGG: rfr:Rfer_4038 phosphoesterase, PA-phosphatase related YP_741652.1 KEGG: reu:Reut_A1043 hypothetical protein YP_741653.1 KEGG: yps:YPTB2160 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_741654.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cyb:CYB_0748 HAD-superfamily hydrolase, subfamily IA, variant 3 YP_741655.1 TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: noc:Noc_1170 NADH-ubiquinone oxidoreductase YP_741656.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: noc:Noc_1171 electron transport complex, RnfABCDGE type, G subunit YP_741657.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: noc:Noc_1172 electron transport complex, RnfABCDGE type, D subunit YP_741658.1 part of membrane-bound complex thought to be involved in electron transport to nitrogen YP_741659.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: sde:Sde_2400 NADH:ubiquinone oxidoreductase, subunit RnfB YP_741660.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: noc:Noc_0970 electron transport complex, RnfABCDGE type, A subunit YP_741661.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_741662.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: mag:amb3406 integral membrane protein possibly involved in chromosome condensation YP_741663.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: nwi:Nwi_0141 camphor resistance CrcB protein YP_741664.1 PFAM: peptidase M48, Ste24p; KEGG: noc:Noc_1831 peptidase M48, Ste24p YP_741665.1 PFAM: Bacitracin resistance protein BacA; KEGG: mta:Moth_0571 undecaprenol kinase YP_741666.1 PFAM: porin, Gram-negative type; KEGG: tbd:Tbd_0448 outer membrane protein (porin) YP_741667.1 PFAM: CBS domain containing protein; KEGG: mma:MM1660 MG2+ transporter MGTE YP_741668.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: tdn:Tmden_1342 divalent cation transporter YP_741669.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis YP_741670.1 TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: yps:YPTB2791 arsenate reductase YP_741671.1 KEGG: sru:SRU_2006 hypothetical protein YP_741672.1 PFAM: metallophosphoesterase; KEGG: sru:SRU_2007 Ser/Thr protein phosphatase YP_741673.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rpc:RPC_1920 peroxidase YP_741674.1 PFAM: beta-lactamase domain protein; KEGG: sil:SPO1030 metallo-beta-lactamase YP_741675.1 KEGG: mag:amb0248 6-pyruvoyl-tetrahydropterin synthase YP_741676.1 KEGG: rfr:Rfer_3395 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_741677.1 PFAM: Polyprenyl synthetase; KEGG: noc:Noc_3032 trans-hexaprenyltranstransferase YP_741678.1 PFAM: UspA domain protein; KEGG: vch:VC0428 hypothetical protein YP_741679.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: csa:Csal_0980 choline/carnitine/betaine transport YP_741680.1 3'-5' exonuclease of DNA polymerase III YP_741681.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase KEGG: csa:Csal_0978 cyclic nucleotide-binding domain (cNMP-BD) protein YP_741682.1 PFAM: Rhs element Vgr protein; KEGG: eca:ECA2104 VgrG protein YP_741683.1 KEGG: pst:PSPTO2537 hypothetical protein YP_741685.1 KEGG: xoo:XOO3467 hypothetical protein YP_741689.1 PFAM: ribosomal protein L21; KEGG: vvy:VV0470 ribosomal protein L21 YP_741690.1 involved in the peptidyltransferase reaction during translation YP_741691.1 PFAM: GTP-binding protein, HSR1-related; GTP1/OBG sub domain protein; KEGG: csa:Csal_0476 GTP1/OBG subdomain YP_741692.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_741693.1 PFAM: ribosomal protein S20; KEGG: pfo:Pfl_4855 ribosomal protein S20p YP_741694.1 TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: noc:Noc_3038 virulence factor MviN-like YP_741695.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: sgl:SG0413 riboflavin biosynthesis protein YP_741696.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme YP_741697.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II; KEGG: pcr:Pcryo_0401 lipoprotein signal peptidase YP_741698.1 KEGG: ppu:PP0606 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein YP_741699.1 KEGG: csa:Csal_0493 methylation YP_741700.1 KEGG: pol:Bpro_2876 methylation YP_741701.1 TIGRFAM: general secretion pathway protein H; KEGG: rme:Rmet_5685 pilus assembly protein FimT YP_741702.1 TIGRFAM: type IV pilus modification protein PilV; KEGG: noc:Noc_2271 type IV fimbrial biogenesis protein PilV YP_741703.1 TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: pst:PSPTO0813 type IV pilus assembly protein PilW YP_741704.1 KEGG: noc:Noc_2273 type IV pilus assembly protein PilX YP_741706.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine YP_741707.1 PFAM: DNA polymerase, beta domain protein region; KEGG: eba:ebA5915 hypothetical protein YP_741708.1 KEGG: cch:Cag_0152 hypothetical protein YP_741709.1 PFAM: electron transport protein SCO1/SenC; KEGG: son:SO4615 SCO1/SenC family protein YP_741710.1 involved in methylation of ribosomal protein L3 YP_741711.1 PFAM: TPR repeat-containing protein; peptidase M48, Ste24p; SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_0402 peptidase M48, Ste24p YP_741712.1 KEGG: noc:Noc_0799 hypothetical protein YP_741713.1 KEGG: noc:Noc_0798 hypothetical protein YP_741714.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; KEGG: mca:MCA1868 ATP-dependent DNA helicase RecQ YP_741716.1 PFAM: Auxin Efflux Carrier; KEGG: rru:Rru_A3182 auxin efflux carrier YP_741717.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: csa:Csal_2409 TRAP transporter, 4TM/12TM fusion protein YP_741718.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: csa:Csal_2408 TRAP transporter solute receptor, TAXI family YP_741719.1 PFAM: aldehyde dehydrogenase; KEGG: eba:ebA2996 succinate-semialdehyde dehydrogenase YP_741720.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: sma:SAV5233 NAD-binding protein YP_741721.1 PFAM: aminotransferase, class I and II; KEGG: tko:TK2268 aspartate aminotransferase YP_741722.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_04405 outer membrane receptor protein YP_741723.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: hch:HCH_04946 uncharacterized protein, possibly involved in aromatic compounds catabolism YP_741724.1 PFAM: thioesterase superfamily protein; KEGG: ppu:PP4180 hypothetical protein YP_741725.1 PFAM: protein of unknown function DUF1043; KEGG: sgl:SG0214 hypothetical protein YP_741726.1 PFAM: acriflavin resistance protein; KEGG: ana:alr5294 probable cation efflux system protein YP_741727.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA7103 HlyD-like secretion protein YP_741728.1 PFAM: ribosomal protein S16; KEGG: csa:Csal_3016 ribosomal protein S16 YP_741729.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: noc:Noc_2259 16S rRNA processing protein RimM YP_741730.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_741731.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_741732.1 PFAM: FlgN family protein; KEGG: hch:HCH_04722 flagella synthesis protein FlgN YP_741733.1 PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: pae:PA3351 negative regulator of flagellin synthesis FlgM YP_741734.1 KEGG: noc:Noc_2683 flageller protein FlgA YP_741735.1 PFAM: response regulator receiver; CheW domain protein; KEGG: pae:PA3349 probable chemotaxis protein YP_741736.1 PFAM: MCP methyltransferase, CheR-type; Methyltransferase type 11; Methyltransferase type 12; KEGG: pae:PA3348 probable chemotaxis protein methyltransferase YP_741737.1 TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: noc:Noc_2378 flagellar basal-body rod protein FlgB YP_741738.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cps:CPS_1478 flagellar basal-body rod protein FlgC YP_741739.1 PFAM: flagellar hook capping protein; KEGG: hch:HCH_04480 flagellar hook capping protein YP_741740.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: xcb:XC_2237 flagellar biosynthesis, hook protein YP_741741.1 TIGRFAM: flagellar basal-body rod protein FlgF; KEGG: noc:Noc_2374 protein of unknown function DUF1078 YP_741742.1 TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: noc:Noc_2373 hypothetical protein YP_741743.1 PFAM: flagellar L-ring protein; KEGG: pae:PA1083 flagellar L-ring protein precursor FlgH YP_741744.1 part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum YP_741745.1 KEGG: hch:HCH_04474 muramidase (flagellum-specific); TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2 YP_741746.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: noc:Noc_2369 hypothetical protein YP_741747.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: noc:Noc_2368 flagellin-like YP_741748.1 PFAM: HhH-GPD family protein; SMART: iron-sulfur cluster loop; KEGG: det:DET1612 DNA repair protein, HhH-GPD family YP_741749.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: csa:Csal_1856 short-chain dehydrogenase/reductase SDR YP_741750.1 PFAM: Squalene/phytoene synthase; KEGG: noc:Noc_1042 squalene/phytoene synthase YP_741751.1 KEGG: csa:Csal_1112 hypothetical protein YP_741752.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: csa:Csal_1111 peptidase S15 YP_741753.1 KEGG: rme:Rmet_0710 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase YP_741754.1 KEGG: csa:Csal_1858 ubiquinone biosynthesis O-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12 YP_741755.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline YP_741756.1 PFAM: shikimate kinase; KEGG: sde:Sde_1230 TonB-dependent receptor YP_741757.1 KEGG: noc:Noc_2293 initiation factor 2B alpha/beta/delta; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; PFAM: initiation factor 2B related YP_741758.1 catalyzes the conversion of NADPH to NADH YP_741759.1 PFAM: OmpW family protein; KEGG: bbr:BB4842 outer membrane protein YP_741760.1 PFAM: protein of unknown function DUF107; KEGG: pab:PAB1932 nodulation protein NfeD YP_741761.1 PFAM: gamma-glutamyltranspeptidase; KEGG: pol:Bpro_1819 gamma-glutamyltransferase YP_741762.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ape:APE2542 hypothetical protein YP_741763.1 KEGG: ape:APE2545 hypothetical protein YP_741764.1 PFAM: EAL domain protein; KEGG: lpn:lpg0113 signal transduction protein containing EAL and modified HD-GYP domains YP_741765.1 PFAM: transporter-associated region; sodium/hydrogen exchanger; KEGG: hch:HCH_03500 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain YP_741766.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: sgl:SG2303 peptidyl-prolyl cis-trans isomerase A YP_741767.1 TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: mca:MCA1421 DNA gyrase, A subunit YP_741768.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_741769.1 PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: noc:Noc_0173 D-isomer specific 2-hydroxyacid dehydrogenase YP_741770.1 TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: noc:Noc_0174 chorismate mutase YP_741771.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_741772.1 PFAM: Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: mca:MCA1416 prephenate dehydrogenase YP_741773.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_741774.1 KEGG: ilo:IL1356 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region YP_741775.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_741776.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control YP_741777.1 KEGG: lpp:lpp1377 hypothetical protein YP_741778.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_0185 TPR repeat protein YP_741779.1 KEGG: tbd:Tbd_0960 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_741780.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages YP_741781.1 KEGG: bxe:Bxe_B2003 hypothetical protein YP_741782.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: lpf:lpl2012 hypothetical protein YP_741783.1 PFAM: ferric-uptake regulator; KEGG: bba:Bd1656 ferric uptake regulator-like protein YP_741784.1 PFAM: protein of unknown function DUF1244; KEGG: hch:HCH_04373 hypothetical protein YP_741785.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: noc:Noc_0720 GTP-binding protein TypA YP_741786.1 PFAM: PP-loop domain protein; KEGG: noc:Noc_1596 ATPase YP_741787.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_2697 type I secretion outer membrane protein, TolC YP_741788.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis YP_741789.1 PFAM: Polyprenyl synthetase; KEGG: mca:MCA0818 geranyltranstransferase YP_741790.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: cbu:CBU_0468 exodeoxyribonuclease VII, small subunit YP_741791.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_741792.1 TIGRFAM: CRISPR-associated protein Cas2; KEGG: mca:MCA0929.1 CRISPR-associated protein Cas2 YP_741793.1 TIGRFAM: CRISPR-associated protein Cas1; KEGG: mca:MCA0930 CRISPR-associated protein Cas1 YP_741794.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: mca:MCA0932 CRISPR-associated CT1976 family protein YP_741795.1 TIGRFAM: CRISPR-associated protein, Cse4 family; KEGG: mca:MCA0933 CRISPR-associated CT1975 family protein YP_741796.1 TIGRFAM: CRISPR-associated protein, Cse2 family; KEGG: mca:MCA0934 CRISPR-associated protein YP_741797.1 TIGRFAM: CRISPR-associated protein, Cse1 family; KEGG: mca:MCA0935 CRISPR-associated protein YP_741798.1 TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: mca:MCA0936 CRISPR-associated helicase Cas3 YP_741799.1 KEGG: neu:NE0074 alpha-glucan phosphorylase, TIGRFAM: alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35 YP_741800.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_741801.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_741802.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_741803.1 PFAM: glycoside hydrolase, family 57; KEGG: tbd:Tbd_2060 glycosyl hydrolase 57 YP_741804.1 amylomaltase; acts to release glucose from maltodextrins YP_741806.1 KEGG: noc:Noc_0832 hypothetical protein YP_741807.1 KEGG: tcx:Tcr_0149 hypothetical protein YP_741808.1 KEGG: vpa:VPA0323 hypothetical protein YP_741809.1 PFAM: O-methyltransferase, family 3; KEGG: ava:Ava_1652 O-methyltransferase, family 3 YP_741810.1 KEGG: nmu:Nmul_A1801 hypothetical protein YP_741811.1 PFAM: Lytic transglycosylase, catalytic; KEGG: bsu:BG13596 similar to lytic transglycosylase YP_741812.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_741813.1 PFAM: ABC-3 protein; KEGG: dar:Daro_0201 ABC-type Mn2+/Zn2+ transport systems permease components-like protein YP_741814.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_0200 ABC transporter related YP_741815.1 PFAM: periplasmic solute binding protein; KEGG: tbd:Tbd_2538 zinc/manganese transport system substrate-binding protein YP_741816.1 KEGG: tbd:Tbd_2537 hypothetical protein YP_741817.1 PFAM: flagellar basal body-associated protein FliL; KEGG: noc:Noc_2166 flagellar basal body-associated protein FliL YP_741818.1 PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: hch:HCH_05181 flagellar motor switch protein FliM YP_741819.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: sde:Sde_2174 surface presentation of antigens (SpoA) protein YP_741820.1 PFAM: flagellar biosynthesis protein, FliO; KEGG: tcx:Tcr_0739 flagellar biosynthesis protein, FliO YP_741821.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_741822.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: tcx:Tcr_0741 flagellar biosynthetic protein FliQ YP_741823.1 TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: hch:HCH_05176 flagellar biosynthesis pathway, component FliR YP_741824.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: sde:Sde_2169 flagellar biosynthetic protein FlhB YP_741825.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: pae:PA1452 flagellar biosynthesis protein FlhA YP_741826.1 PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; KEGG: pha:PSHAa0807 flagellar biosynthesis protein YP_741827.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: noc:Noc_2156 cobyrinic acid a,c-diamide synthase YP_741828.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: pae:PA1455 sigma factor FliA YP_741829.1 PFAM: response regulator receiver; KEGG: vpa:VP2231 chemotaxis protein CheY YP_741830.1 PFAM: Chemotaxis phosphatase, CheZ; KEGG: sdn:Sden_1345 chemotaxis phosphatase, CheZ YP_741831.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: pae:PA1458 probable two-component sensor YP_741832.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_741833.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: hch:HCH_05163 ATPase involved in chromosome partitioning YP_741834.1 PFAM: CheW domain protein; KEGG: ppu:PP4333 CheW domain protein YP_741835.1 PFAM: CheW domain protein; KEGG: sde:Sde_2155 flagellar FliF M-ring protein YP_741836.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; KEGG: ppu:PP1813 ComEA-related protein YP_741837.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_741838.1 helicase involved in DNA repair and perhaps also replication YP_741840.1 PFAM: DsrC family protein; KEGG: tbd:Tbd_2480 sulfite reductase YP_741841.1 KEGG: rfr:Rfer_2344 hypothetical protein YP_741842.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: hch:HCH_04007 parvulin-like peptidyl-prolyl isomerase YP_741843.1 TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: csa:Csal_1333 respiratory nitrate reductase, gamma subunit YP_741844.1 TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: hch:HCH_04009 nitrate reductase molybdenum cofactor assembly chaperone YP_741845.1 TIGRFAM: nitrate reductase, beta subunit; KEGG: bms:BRA0298 respiratory nitrate reductase, beta subunit YP_741846.1 KEGG: csa:Csal_1330 nitrate reductase, alpha subunit; TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region YP_741847.1 KEGG: eba:ebA6288 nitrate/nitrite antiporter YP_741848.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: tbd:Tbd_1400 periplasmic sensor signal transduction histidine kinase YP_741849.1 PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: pae:PA3879 two-component response regulator NarL YP_741850.1 PFAM: major facilitator superfamily MFS_1; KEGG: par:Psyc_0601 MFS nitrate/nitrite transporter YP_741851.1 PFAM: UspA domain protein; KEGG: sai:Saci_1640 universal stress protein YP_741852.1 KEGG: pae:PA5139 hypothetical protein YP_741853.1 KEGG: mag:amb3448 hypothetical protein YP_741854.1 KEGG: mag:amb3449 hypothetical protein YP_741855.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb4415 FOG: GGDEF domain YP_741856.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mag:amb0187 serine phosphatase RsbU YP_741857.1 KEGG: mca:MCA0291 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; 2-nitropropane dioxygenase, NPD YP_741858.1 PFAM: protein of unknown function DUF125, transmembrane; KEGG: csa:Csal_2162 protein of unknown function DUF125, transmembrane YP_741859.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_741860.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: bxe:Bxe_A1920 cytidine/deoxycytidylate deaminase, zinc-binding YP_741861.1 YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function YP_741862.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: csa:Csal_2488 antibiotic biosynthesis monooxygenase YP_741863.1 PFAM: histone deacetylase superfamily; KEGG: bur:Bcep18194_A4392 histone deacetylase superfamily YP_741864.1 PFAM: protein of unknown function DUF454; KEGG: rru:Rru_A2502 protein of unknown function DUF454 YP_741865.1 PFAM: GCN5-related N-acetyltransferase; protein of unknown function DUF699, ATPase ; domain of unknown function DUF1726; KEGG: noc:Noc_2706 hypothetical protein YP_741866.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1279 NADH/ubiquinone/plastoquinone (complex I) YP_741867.1 PFAM: protein of unknown function DUF344; KEGG: dar:Daro_3585 protein of unknown function DUF344 YP_741868.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: noc:Noc_1406 cation transport ATPase YP_741869.1 PFAM: DSBA oxidoreductase; KEGG: atc:AGR_C_3262 hypothetical protein YP_741870.1 KEGG: sme:SMc01665 hypothetical protein YP_741871.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: rpc:RPC_3606 sigma54 specific transcriptional regulator with GAF sensor, fis family YP_741872.1 KEGG: rpc:RPC_3603 acetone carboxylase gamma subunit YP_741873.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: rpc:RPC_3604 hydantoinase B/oxoprolinase YP_741874.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: rpc:RPC_3605 hydantoinase/oxoprolinase YP_741875.1 PFAM: glutaredoxin; KEGG: tbd:Tbd_0167 glutaredoxin family protein YP_741877.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: pca:Pcar_0380 hypothetical protein YP_741878.1 TIGRFAM: thiamine biosynthesis/tRNA modification protein ThiI; PFAM: thiamine biosynthesis protein; ExsB family protein; KEGG: mta:Moth_0198 thiamine biosynthesis YP_741879.1 PFAM: phosphopantetheine-binding; KEGG: dps:DPPB41 predicted orf YP_741880.1 PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: csa:Csal_1092 GCN5-related N-acetyltransferase YP_741881.1 PFAM: protein of unknown function DUF123; KEGG: mca:MCA2572 hypothetical protein YP_741882.1 TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cvi:CV0895 outer membrane protein OprC complement YP_741883.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: csa:Csal_0685 glyoxalase/bleomycin resistance protein/dioxygenase YP_741884.1 PFAM: periplasmic solute binding protein; KEGG: tfu:Tfu_1663 ABC transporter substrate-binding protein YP_741885.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: syw:SYNW1340 ABC transporter, ATP binding domain, possibly Mn transporter YP_741886.1 PFAM: ABC-3 protein; KEGG: bat:BAS2965 ABC transporter, permease YP_741887.1 PFAM: major facilitator superfamily MFS_1; KEGG: ilo:IL2408 permease of the major facilitator superfamily YP_741888.1 PFAM: protein of unknown function UPF0061; KEGG: rpd:RPD_2948 protein of unknown function UPF0061 YP_741889.1 PFAM: Lytic transglycosylase, catalytic; KEGG: pfo:Pfl_0998 lytic transglycosylase, catalytic YP_741890.1 KEGG: gsu:GSU1154 surface repeat protein YP_741891.1 PFAM: Polypeptide-transport-associated domain protein, ShlB-type; KEGG: gsu:GSU1153 outer membrane protein, OMP85 family YP_741892.1 KEGG: gme:Gmet_1200 hypothetical protein YP_741893.1 PFAM: metallophosphoesterase; KEGG: bte:BTH_II0558 serine/threonine protein phosphatase 1 YP_741895.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_3525 diguanylate cyclase (GGDEF domain) YP_741896.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; RNA-directed RNA polymerase, double-strand and positive-strand RNA virus; KEGG: xac:XAC1420 hypothetical protein YP_741897.1 KEGG: plt:Plut_1002 hypothetical protein YP_741898.1 PFAM: cytochrome B561; KEGG: rru:Rru_A3682 cytochrome b561 YP_741899.1 PFAM: acriflavin resistance protein; KEGG: hch:HCH_05479 cation/multidrug efflux pump YP_741900.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: vfi:VF0297 acriflavin resistance periplasmic protein YP_741901.1 PFAM: regulatory protein, TetR; KEGG: eba:ebA6247 transcriptional regulator, TetR family YP_741902.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: mca:MCA0335 hypothetical protein YP_741903.1 PFAM: phage integrase; KEGG: vpa:VP0380 integrase YP_741904.1 PFAM: Prophage CP4-57 regulatory; KEGG: rpc:RPC_4521 phage transcriptional regulator, AlpA YP_741905.1 KEGG: rsp:RSP_4122 hypothetical protein YP_741912.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: bmb:BruAb2_0899 NnrR, transcriptional regulator YP_741913.1 PFAM: cytochrome c, class I; KEGG: noc:Noc_3049 cytochrome c, class I YP_741914.1 KEGG: hch:HCH_01015 cytochrome c553 YP_741915.1 PFAM: FMN-binding domain protein; KEGG: hch:HCH_03389 regulator of nitric oxide reductase transcription YP_741916.1 reduces nitrous oxide to nitrogen YP_741917.1 PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: pae:PA3393 NosD protein YP_741918.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_4734 copper ABC transporter, ATP-binding protein YP_741919.1 KEGG: hch:HCH_03385 ABC-type transport system involved in multi-copper enzyme maturation, permease component YP_741920.1 PFAM: NosL family protein; KEGG: pae:PA3396 NosL protein YP_741921.1 PFAM: phospholipase/Carboxylesterase; KEGG: bpe:BP2966 probable carboxylesterase YP_741923.1 PFAM: NosL family protein; KEGG: pae:PA3396 NosL protein YP_741925.1 KEGG: mlo:mll7347 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase YP_741926.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll7349 ABC transporter binding protein YP_741927.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A0789 ABC oligopeptide/dipeptide transporter, innermembrane subunit YP_741928.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: mlo:mll2276 oligopeptide binding protein of oligopeptide ABC transporter YP_741929.1 PFAM: aminotransferase, class I and II; KEGG: hch:HCH_04972 aspartate/tyrosine/aromatic aminotransferase YP_741930.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_741931.1 TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: noc:Noc_1041 pseudouridine synthase, Rsu YP_741932.1 PFAM: protein of unknown function DUF81; KEGG: pcr:Pcryo_2117 protein of unknown function DUF81 YP_741933.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Nitrate and nitrite sensing domain protein; KEGG: pca:Pcar_2558 signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like YP_741934.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA3580 nod factor export ATP-binding protein I YP_741935.1 TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: rme:Rmet_2458 ABC-2 type transporter, NodJ family YP_741936.1 KEGG: tbd:Tbd_0829 hypothetical protein YP_741937.1 KEGG: tbd:Tbd_0830 hypothetical protein YP_741938.1 KEGG: csa:Csal_2070 SOS-response transcriptional repressor, LexA; TIGRFAM: LexA repressor; PFAM: peptidase S24, S26A and S26B; LexA DNA-binding domain protein YP_741939.1 KEGG: pae:PA0934 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein YP_741940.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4053 methyl-accepting chemotaxis protein YP_741941.1 KEGG: gsu:GSU1927 sensory box/response regulator; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_741942.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: psb:Psyr_3902 ABC transporter TobE YP_741943.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_741944.1 catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine YP_741945.1 PFAM: manganese and iron superoxide dismutase; KEGG: tcx:Tcr_0237 superoxide dismutase YP_741946.1 PFAM: Hydantoinase B/oxoprolinase; KEGG: pca:Pcar_3104 N-methylhydantoinase B YP_741947.1 TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO1558 phosphate regulon response regulator PhoB YP_741948.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: pfo:Pfl_5607 PAS/PAC sensor signal transduction histidine kinase YP_741949.1 KEGG: neu:NE1129 hypothetical protein YP_741950.1 KEGG: neu:NE1130 hypothetical protein YP_741951.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: noc:Noc_0335 PAS sensor diguanylate cyclase/phosphodiesterase YP_741952.1 KEGG: bth:BT1890 hypothetical protein YP_741954.1 KEGG: bja:bll8095 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_741955.1 TIGRFAM: phosphate binding protein; KEGG: son:SO1560 phosphate-binding protein YP_741956.1 PFAM: porin, Gram-negative type; KEGG: tbd:Tbd_0448 outer membrane protein (porin) YP_741957.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: bxe:Bxe_C0542 transcriptional regulator, Crp/Fnr family YP_741958.1 KEGG: dar:Daro_2048 PAS:GGDEF; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_741959.1 SMART: PAS domain containing protein; KEGG: gme:Gmet_0779 PAS/PAC sensor signal transduction histidine kinase YP_741960.1 TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; PAS fold-4 domain protein; KEGG: gme:Gmet_0780 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor YP_741961.1 PFAM: transport-associated; KEGG: dar:Daro_2047 transport-associated YP_741962.1 KEGG: pae:PA2624 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type YP_741964.1 PFAM: Death-on-curing protein; KEGG: noc:Noc_1805 death-on-curing protein YP_741965.1 SMART: AAA ATPase; KEGG: csa:Csal_1077 hypothetical protein YP_741966.1 KEGG: bbr:BB1852 hypothetical protein YP_741967.1 KEGG: csa:Csal_0087 type III restriction enzyme, res subunit YP_741968.1 PFAM: OsmC family protein; KEGG: rpa:RPA2621 hypothetical protein YP_741969.1 PFAM: transposase, IS4 family protein; KEGG: eba:ebA575 transposase, IS4 family YP_741970.1 PFAM: NERD domain protein; KEGG: noc:Noc_0649 DNA topoisomerase I YP_741971.1 KEGG: vvu:VV12414 hypothetical protein YP_741972.1 KEGG: pst:PSPTO0582 hypothetical protein YP_741973.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat YP_741974.1 PFAM: binding-protein-dependent transport systems inner membrane component; SMART: WD-40 repeat protein; KEGG: noc:Noc_2398 ABC transporter, inner membrane subunit YP_741975.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA5367 phosphate transport system permease YP_741976.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_741977.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: noc:Noc_2395 phosphate transport system protein, PhoU YP_741978.1 KEGG: pfo:Pfl_2628 hypothetical protein YP_741979.1 KEGG: pfo:Pfl_2629 hypothetical protein YP_741980.1 KEGG: pfo:Pfl_2625 hypothetical protein YP_741981.1 KEGG: pfo:Pfl_2629 hypothetical protein YP_741982.1 KEGG: pfo:Pfl_2629 hypothetical protein YP_741983.1 KEGG: pfo:Pfl_2630 hypothetical protein YP_741984.1 PFAM: Rhs element Vgr protein; KEGG: eca:ECA2104 VgrG protein YP_741986.1 KEGG: cgl:NCgl1354 TPR-repeat-containing protein YP_741987.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: eba:ebA4468 DNA-binding response regulator OmpR YP_741988.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: eba:ebA4466 predicted histidine kinase-like ATPase YP_741989.1 PFAM: membrane-flanked domain; KEGG: sde:Sde_3048 hypothetical protein YP_741990.1 PFAM: membrane-flanked domain; KEGG: sde:Sde_3047 serine/threonine protein kinase YP_741991.1 PFAM: chemotaxis sensory transducer; KEGG: bxe:Bxe_A1954 methyl-accepting chemotaxis sensory transducer YP_741992.1 PFAM: chemotaxis sensory transducer; KEGG: bxe:Bxe_A1954 methyl-accepting chemotaxis sensory transducer YP_741993.1 KEGG: hch:HCH_06250 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase YP_741994.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: psp:PSPPH_0869 hypothetical protein YP_741995.1 SMART: helicase c2; KEGG: noc:Noc_1364 helicase C2 YP_741996.1 KEGG: sdy:SDY_3469 hypothetical protein YP_741997.1 KEGG: aba:Acid345_0200 hypothetical protein YP_741998.1 SMART: Mov34/MPN/PAD-1 family protein; KEGG: syf:Synpcc7942_0159 Mov34/MPN/PAD-1 YP_741999.1 ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase YP_742000.1 KEGG: dar:Daro_0835 hypothetical protein YP_742001.1 KEGG: bpa:BPP4036 cytochrome c YP_742002.1 PFAM: cytochrome c, class II; KEGG: rru:Rru_A2256 cytochrome c, class II YP_742003.1 KEGG: noc:Noc_0119 hypothetical protein YP_742004.1 KEGG: cvi:CV3473 hypothetical protein YP_742005.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: vpa:VP2536 hemolysin YP_742006.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: rru:Rru_A2000 hypothetical protein YP_742007.1 PFAM: ribulose bisphosphate carboxylase, large chain; KEGG: rru:Rru_A1998 ribulose-bisphosphate carboxylase-like protein; rubisco-like protein YP_742008.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pae:PA2628 hypothetical protein YP_742009.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: xac:XAC1488 sensor histidine kinase YP_742011.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_742012.1 PFAM: RNA-binding S4 domain protein; KEGG: pol:Bpro_2006 RNA-binding S4 YP_742014.1 KEGG: tbd:Tbd_0828 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein YP_742015.1 TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_04222 permease of the major facilitator superfamily YP_742016.1 PFAM: PEP-utilizing enzyme; KEGG: cvi:CV0558 probable phosphoenolpyruvate-protein phosphotransferase YP_742018.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: sme:SMb21550 hypothetical protein YP_742019.1 PFAM: Rhodanese domain protein; KEGG: sme:SMb21549 exported sulfurtransferase, rhodanese protein YP_742020.1 Catalyzes the oxidation of dihydrolipoamide to lipoamide YP_742021.1 PFAM: cyclic nucleotide-binding; KEGG: sco:SCO7310 regulatory protein YP_742022.1 PFAM: protein of unknown function DUF77; KEGG: gsu:GSU1562 conserved hypothetical protein TIGR00106 YP_742023.1 KEGG: hch:HCH_00195 hypothetical protein YP_742024.1 PFAM: Radical SAM domain protein; KEGG: ilo:IL1509 lysine 2,3-aminomutase related protein enzyme YP_742025.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rru:Rru_A2095 secretion protein HlyD YP_742026.1 PFAM: acriflavin resistance protein; KEGG: rru:Rru_A2094 acriflavin resistance protein YP_742027.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: gvi:gll4077 hypothetical protein YP_742028.1 KEGG: sat:SYN_02063 outer membrane protein YP_742029.1 N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid YP_742030.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde YP_742031.1 TIGRFAM: L-2,4-diaminobutyric acid acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: noc:Noc_1562 proteinase inhibitor I3, Kunitz legume YP_742032.1 PFAM: peptidase M22, glycoprotease; KEGG: noc:Noc_0917 peptidase M22, glycoprotease YP_742033.1 PFAM: periplasmic solute binding protein; KEGG: atc:AGR_C_2805 adhesin YP_742034.1 PFAM: ferric-uptake regulator; KEGG: noc:Noc_2424 ferric-uptake regulator YP_742035.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pae:PA5500 zinc transport system ATP-binding protein YP_742036.1 PFAM: ABC-3 protein; KEGG: pfl:PFL_0076 zinc ABC transporter, permease YP_742037.1 KEGG: pol:Bpro_1681 hypothetical protein YP_742038.1 PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_1679 protein of unknown function DUF214 YP_742039.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1678 ABC transporter related YP_742040.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_742041.1 KEGG: cbu:CBU_0730 hypothetical protein YP_742042.1 PFAM: Mammalian cell entry related domain protein; KEGG: cbu:CBU_0729 conserved hypothetical protein YP_742043.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xoo:XOO0805 ABC transporter ATP-binding protein YP_742044.1 PFAM: protein of unknown function DUF140; KEGG: dvu:DVU0612 STAS domain protein YP_742045.1 KEGG: noc:Noc_0379 hypothetical protein YP_742046.1 TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase, GCS2; KEGG: rru:Rru_A0570 glutamate--cysteine ligase YP_742047.1 PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: noc:Noc_0394 protein of unknown function DUF523 YP_742048.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: noc:Noc_2937 secretion protein HlyD YP_742049.1 PFAM: acriflavin resistance protein; KEGG: noc:Noc_2936 acriflavin resistance protein YP_742050.1 PFAM: molybdopterin binding domain; KEGG: eba:ebA4355 predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA YP_742052.1 PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: cps:CPS_1909 major facilitator family transporter YP_742053.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_742054.1 KEGG: pfo:Pfl_4621 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase YP_742055.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: tcx:Tcr_1332 preprotein translocase, YajC subunit YP_742056.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: ftl:FTL_0847 preprotein translocase YP_742057.1 part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane YP_742058.1 forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_742059.1 PFAM: CBS domain containing protein; KEGG: xcb:XC_1246 hypothetical protein YP_742060.1 PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: mag:amb2153 Ser protein kinase YP_742061.1 PFAM: protein of unknown function DUF444; KEGG: mag:amb2154 hypothetical protein YP_742062.1 PFAM: SpoVR family protein; KEGG: mag:amb2155 hypothetical protein YP_742063.1 TIGRFAM: Glutaredoxin-family domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; glutaredoxin; Redoxin domain protein; KEGG: ava:Ava_4981 glutaredoxin-like region YP_742064.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dar:Daro_0191 GCN5-related N-acetyltransferase YP_742065.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_742066.1 PFAM: nucleoside:H+ symporter; major facilitator superfamily MFS_1; KEGG: noc:Noc_2803 nucleoside/H+ symporter, major facilitator superfamily MFS_1 YP_742067.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_742068.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_742069.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_742070.1 KEGG: tcx:Tcr_0800 aspartate-semialdehyde dehydrogenase, USG-1 related; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region YP_742071.1 KEGG: tbd:Tbd_1918 membrane protein; K07288 uncharacterized membrane protein YP_742072.1 KEGG: tbd:Tbd_1917 hypothetical protein YP_742073.1 KEGG: sgl:SG1619 pseudouridylate synthase I; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase YP_742074.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_742075.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_742076.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_742077.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: noc:Noc_1022 acetyl-CoA carboxylase carboxyl transferase, beta subunit YP_742078.1 KEGG: xcb:XC_3285 folylpolyglutamate synthase/dihydrofolate synthase; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein YP_742079.1 PFAM: Sporulation domain protein; KEGG: pst:PSPTO3813 DedD protein YP_742080.1 PFAM: Colicin V production protein; KEGG: mca:MCA2490 CvpA family protein YP_742081.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_742082.1 catalyzes the conversion of O-succinylhomoserine into homocysteine YP_742083.1 PFAM: inositol monophosphatase; KEGG: mca:MCA2609 inositol monophosphatase YP_742084.1 TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sgl:SG1771 RNA methyltransferase YP_742085.1 TIGRFAM: serine O-acetyltransferase; KEGG: pfo:Pfl_4614 serine O-acetyltransferase YP_742086.1 TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rso:RSc1021 hypothetical protein YP_742087.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_742088.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: mca:MCA2887 conserved hypothetical protein TIGR00048 YP_742089.1 KEGG: noc:Noc_0901 tfp pilus assembly protein PilF; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein YP_742090.1 SMART: helix-turn-helix domain protein; KEGG: ilo:IL2035 predicted transcriptional regulator, contains N-terminal xre-type HTH domain YP_742091.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_742092.1 KEGG: noc:Noc_0820 hypothetical protein YP_742093.1 PFAM: Pyrrolo-quinoline quinone; KEGG: noc:Noc_0821 pyrrolo-quinoline quinone YP_742094.1 PFAM: protein of unknown function DUF833; KEGG: gsu:GSU0792 hypothetical protein YP_742095.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_742096.1 KEGG: hch:HCH_05060 hypothetical protein YP_742097.1 PFAM: isochorismatase hydrolase; KEGG: noc:Noc_0271 pyrazinamidase / nicotinamidase YP_742098.1 KEGG: noc:Noc_2712 hypothetical protein YP_742099.1 KEGG: xfa:XF1501 sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein YP_742100.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_742101.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pae:PA2611 uroporphyrin-III C-methyltransferase / precorrin-2 oxidase / ferrochelatase YP_742102.1 KEGG: neu:NE0855 probable 5' adenylylsulfate APS reductase; TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; PFAM: phosphoadenosine phosphosulfate reductase YP_742103.1 PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: mca:MCA2059 nitrite/sulfite reductase YP_742104.1 PFAM: Uncharacterised conserved protein UCP030820; KEGG: eba:ebA2621 hypothetical protein YP_742105.1 PFAM: cytochrome c, class I; KEGG: reu:Reut_A3262 cytochrome c, class I YP_742106.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mag:amb2173 uncharacterized NAD(FAD)-dependent dehydrogenase YP_742107.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: bja:blr2899 hypothetical protein YP_742108.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpa:RPA1367 sulfur oxidation protein SoxY YP_742109.1 KEGG: mag:amb4323 predicted integral membrane protein YP_742110.1 KEGG: mfa:Mfla_0519 integral membrane protein YP_742112.1 PFAM: nucleoside recognition domain protein; KEGG: mag:amb1309 uncharacterized membrane protein YP_742113.1 KEGG: csa:Csal_3028 hypothetical protein YP_742114.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: ppr:PBPRB1236 hypothetical protein YP_742115.1 PFAM: Glutathione S-transferase, C-terminal domain; KEGG: mlo:mll2799 glutathione S-transferase YP_742116.1 TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: tcx:Tcr_1010 flavoprotein WrbA YP_742117.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: eba:ebA1078 probable molybdopterin biosynthesis MOEA protein YP_742118.1 KEGG: sme:SMa1515 hypothetical protein YP_742119.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_742120.1 KEGG: eba:ebA2942 hypothetical protein YP_742121.1 KEGG: rso:RSc2377 proline rich protein YP_742122.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4506 iron-sulfur cluster-binding protein YP_742123.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: nha:Nham_3124 cytoplasmic chaperone TorD YP_742124.1 TIGRFAM: Twin-arginine translocation pathway signal YP_742125.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: vpa:VP1513 formate dehydrogenase large subunit YP_742126.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_3260 4Fe-4S ferredoxin, iron-sulfur binding YP_742128.1 TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: csa:Csal_1917 formate dehydrogenase, gamma subunit YP_742129.1 KEGG: nha:Nham_3120 hypothetical protein YP_742131.1 KEGG: bha:BH1312 hypothetical protein YP_742132.1 PFAM: protein of unknown function UPF0047; KEGG: noc:Noc_1691 hypothetical protein YP_742134.1 PFAM: thiamineS protein; KEGG: rfr:Rfer_2848 thiamineS YP_742135.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: eba:ebA5007 hypothetical protein YP_742136.1 PFAM: aldehyde ferredoxin oxidoreductase; KEGG: mag:amb2922 Tungsten-containing aldehyde ferredoxin oxidoreductase YP_742137.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: eba:ebA5004 iron-sulfur cluster-binding protein; potential subunit of aldehyde oxidoreductase YP_742138.1 PFAM: GTP cyclohydrolase I; KEGG: psp:PSPPH_1071 GTP cyclohydrolase I YP_742139.1 catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate YP_742140.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, transmembrane region; KEGG: hch:HCH_00660 response regulator containing a CheY-like receiver domain and a GGDEF domain YP_742141.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_742142.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: mag:amb3359 uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit YP_742143.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: bxe:Bxe_A1060 molybdopterin-guanine dinucleotide biosynthesis protein A YP_742144.1 KEGG: nph:NP4954A anaerobic dehydrogenase cluster protein YP_742145.1 PFAM: regulatory protein, ArsR; KEGG: sil:SPOA0427 transcriptional regulator, ArsR family YP_742146.1 TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: sil:SPO1956 sulfate permease YP_742147.1 KEGG: sru:SRU_1074 methionine-S-sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A YP_742148.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: noc:Noc_0537 sigma-54 specific transcriptional regulator, fis-type YP_742149.1 KEGG: noc:Noc_0538 hypothetical protein YP_742150.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU2188 ABC transporter, ATP-binding protein YP_742151.1 PFAM: protein of unknown function DUF214; KEGG: gsu:GSU2187 ABC transporter, permease YP_742152.1 KEGG: sru:SRU_1328 hypothetical protein YP_742153.1 PFAM: UspA domain protein; KEGG: nmu:Nmul_A0991 UspA YP_742154.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: gsu:GSU2762 glycerol kinase YP_742155.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_742156.1 PFAM: Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; KEGG: gvi:gll2743 hypothetical protein YP_742157.1 PFAM: regulatory proteins, IclR; KEGG: csa:Csal_0066 transcriptional regulator, IclR family YP_742158.1 PFAM: MOFRL domain protein; KEGG: eba:ebA4615 hydroxypyruvate reductase YP_742159.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: mca:MCA0497 pterin-4-alpha-carbinolamine dehydratase YP_742160.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: mfa:Mfla_0199 molybdenum cofactor biosynthesis protein C YP_742161.1 PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: gvi:glr0293 probable carbonyl reductase YP_742162.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_742163.1 TIGRFAM: thioesterase domain, KEGG: cte:CT0459 hypothetical protein YP_742164.1 PFAM: adenylate cyclase; KEGG: mca:MCA2454 hypothetical protein YP_742165.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: csa:Csal_2068 ErfK/YbiS/YcfS/YnhG YP_742166.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: noc:Noc_2183 glycoside hydrolase, family 3-like YP_742167.1 PFAM: phosphoribosyltransferase; KEGG: eba:ebA3304 hypoxanthine phosphoribosyltransferase YP_742168.1 PFAM: purine phosphorylase, family 2; KEGG: noc:Noc_0457 5'-methylthioadenosine phosphorylase YP_742169.1 PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: nmu:Nmul_A1737 glycine cleavage T protein (aminomethyl transferase) YP_742170.1 PFAM: protein of unknown function DUF1674; KEGG: rru:Rru_A3578 hypothetical protein YP_742171.1 PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: mag:amb3950 succinate dehydrogenase/fumarate reductase, cytochrome b subunit YP_742172.1 PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: mca:MCA1549 succinate dehydrogenase, hydrophobic membrane anchor protein YP_742173.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_742174.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_742175.1 PFAM: protein of unknown function DUF339; KEGG: xac:XAC2079 hypothetical protein YP_742177.1 catalyzes the formation of oxaloacetate from L-aspartate YP_742178.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response YP_742179.1 PFAM: Anti sigma-E protein RseA family protein; KEGG: xcv:XCV1371 negative regulator of sigma E activity YP_742180.1 PFAM: MucB/RseB family protein; KEGG: noc:Noc_2464 MucB/RseB YP_742181.1 PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: mca:MCA1468 sigma factor regulator MucC YP_742182.1 TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mca:MCA1467 serine protease, MucD YP_742183.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_742184.1 KEGG: mca:MCA1465 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B YP_742185.1 KEGG: xoo:XOO1854 hypothetical protein YP_742186.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_742187.1 TIGRFAM: small GTP-binding protein; GTP-binding; GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; KH, type 2 domain protein; KEGG: pae:PA0771 GTP-binding protein Era YP_742188.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: noc:Noc_0794 recombination protein O, RecO YP_742189.1 involved in the de novo synthesis of pyridoxine (Vitamin B6) YP_742190.1 KEGG: vch:VC2457 holo-(acyl-carrier-protein) synthase; TIGRFAM: holo-acyl-carrier-protein synthase; Phosphopantethiene-protein transferase; PFAM: 4'-phosphopantetheinyl transferase YP_742191.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide YP_742192.1 KEGG: noc:Noc_0800 hypothetical protein YP_742193.1 in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S] YP_742194.1 TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase; KEGG: neu:NE2470 ADP-ribose pyrophosphatase YP_742195.1 KEGG: dar:Daro_2854 hypothetical protein YP_742196.1 KEGG: pae:PA2632 hypothetical protein YP_742197.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_742198.1 PFAM: fumarate lyase; KEGG: mca:MCA1543 fumarate hydratase YP_742199.1 KEGG: noc:Noc_2131 pyrimidine reductase, riboflavin biosynthesis, RibD YP_742200.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: tbd:Tbd_0703 hypothetical protein YP_742201.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_742202.1 KEGG: noc:Noc_1643 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase YP_742203.1 KEGG: noc:Noc_1912 phospholipase D/transphosphatidylase YP_742204.1 KEGG: rba:RB13120 hypothetical protein- transmembrane protein YP_742205.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: dge:Dgeo_2143 multiple antibiotic resistance (MarC)-related proteins YP_742206.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: mca:MCA2186 oxidoreductase, short-chain dehydrogenase/reductase YP_742207.1 PFAM: CBS domain containing protein; peptidase M50; KEGG: det:DET0769 protease YP_742208.1 KEGG: tdn:Tmden_0645 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_742209.1 KEGG: pae:PA1113 probable ATP-binding/permease fusion ABC transporter; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase YP_742210.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: pae:PA5291 probable choline transporter YP_742211.1 KEGG: mca:MCA0115 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_742212.1 PFAM: beta-ketoacyl synthase; KEGG: pae:PA1609 beta-ketoacyl-ACP synthase I YP_742213.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP YP_742214.1 KEGG: csa:Csal_1035 hypothetical protein YP_742215.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ilo:IL2583 signal transduction histidine kinase, contains HAMP domain YP_742216.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: ilo:IL2582 response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains YP_742217.1 PFAM: Lytic transglycosylase, catalytic; KEGG: ilo:IL0012 soluble lytic murein transglycosylase YP_742219.1 PFAM: protein of unknown function UPF0126; KEGG: son:SO1319 hypothetical protein YP_742220.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, central region; Transketolase domain protein; KEGG: noc:Noc_1743 1-deoxy-D-xylulose-5-phosphate synthase YP_742221.1 PFAM: protein of unknown function UPF0153; KEGG: sil:SPO3155 hypothetical protein YP_742222.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bca:BCE3758 heavy metal-transporting ATPase YP_742223.1 KEGG: deh:cbdb_A907 hypothetical protein YP_742224.1 KEGG: par:Psyc_1585 hypothetical protein YP_742225.1 KEGG: hch:HCH_03866 hypothetical protein YP_742227.1 PFAM: outer membrane efflux protein; KEGG: hch:HCH_03018 outer membrane protein YP_742228.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sde:Sde_1930 membrane-fusion protein-like YP_742229.1 TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: hch:HCH_03020 silver efflux pump YP_742230.1 KEGG: ppr:PBPRA1004 cation efflux system transmembrane protein YP_742231.1 KEGG: pmt:PMT1841 hypothetical protein YP_742232.1 stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein YP_742233.1 TIGRFAM: TraB family protein; PFAM: TraB determinant protein; KEGG: noc:Noc_0536 pheromone shutdown protein YP_742234.1 PFAM: protein of unknown function DUF980; KEGG: dar:Daro_2829 protein of unknown function DUF980 YP_742235.1 PFAM: AMP-dependent synthetase and ligase; KEGG: vpa:VP1644 PrpE protein YP_742236.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_0833 flagellar motor protein YP_742237.1 PFAM: OmpA/MotB domain protein; KEGG: noc:Noc_0834 flagellar motor protein YP_742238.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: cvi:CV0544 regulatory gene required to sense and relay the nitrogen status YP_742239.1 Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor YP_742240.1 PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: lpp:lpp0765 hypothetical protein YP_742241.1 KEGG: neu:NE1493 cytochrome c, class IC:cytochrome c, class I YP_742242.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: xcb:XC_3738 transcriptional regulator YP_742243.1 PFAM: cytochrome B561; KEGG: hch:HCH_01820 cytochrome b561 YP_742244.1 PFAM: YceI family protein; KEGG: ilo:IL2562 hypothetical protein YP_742245.1 PFAM: Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: gsu:GSU0570 hypothetical protein YP_742246.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: cvi:CV0433 outer membrane efflux protein YP_742247.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rpc:RPC_4635 hydrophobe/amphiphile efflux-1 HAE1 YP_742248.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dvu:DVU0060 efflux transporter, RND family, MFP subunit YP_742249.1 PFAM: regulatory protein, TetR; Tetracycline transcriptional repressor MAATS-type, C-terminal domain protein; KEGG: pae:PA3574 probable transcriptional regulator YP_742250.1 PFAM: OmpA/MotB domain protein; KEGG: nwi:Nwi_1814 OmpA/MotB YP_742251.1 PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: gsu:GSU0573 alcohol dehydrogenase, zinc-containing YP_742252.1 PFAM: aminotransferase, class V; KEGG: pae:PA2958 hypothetical protein YP_742253.1 PFAM: type IV pilus assembly PilZ; KEGG: pfo:Pfl_4150 type IV pilus assembly PilZ YP_742254.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: mca:MCA1995 DNA polymerase III, delta prime subunit YP_742255.1 PFAM: thymidylate kinase; KEGG: pae:PA2962 thymidylate kinase YP_742256.1 PFAM: aminodeoxychorismate lyase; KEGG: csa:Csal_1605 aminodeoxychorismate lyase YP_742257.1 PFAM: aminotransferase, class IV; KEGG: pae:PA2964 4-amino-4-deoxychorismate lyase YP_742258.1 PFAM: beta-ketoacyl synthase; KEGG: bte:BTH_I1721 3-oxoacyl-(acyl-carrier-protein) synthase II YP_742259.1 carries the fatty acid chain in fatty acid biosynthesis YP_742260.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: tcx:Tcr_0712 3-oxoacyl-(acyl-carrier-protein) reductase YP_742261.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: ppr:PBPRA1194 malonyl Coa-acyl carrier protein transacylase YP_742262.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_742263.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_742264.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_742265.1 PFAM: protein of unknown function DUF177; KEGG: sde:Sde_1625 hypothetical protein YP_742266.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: pfo:Pfl_4162 Maf-like protein YP_742267.1 PFAM: peptidase S49; KEGG: noc:Noc_2845 peptidase S49, SppA YP_742268.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: mca:MCA1479 ribosomal large subunit pseudouridine synthase C YP_742269.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: csa:Csal_1592 ribonuclease, Rne/Rng family YP_742270.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: nmu:Nmul_A1063 protein tyrosine phosphatase YP_742272.1 KEGG: ecs:ECs1001 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase); TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase YP_742273.1 transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate YP_742274.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: hch:HCH_02701 biopolymer transport protein YP_742275.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_2673 MotA/TolQ/ExbB proton channel YP_742276.1 PFAM: ComEC/Rec2-related protein; KEGG: noc:Noc_2672 DNA internalization-related competence protein ComEC/Rec2 YP_742277.1 KEGG: pae:PA2985 hypothetical protein YP_742278.1 KEGG: mca:MCA2625 lipoprotein ABC transporter, ATP-binding protein LolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase YP_742279.1 TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: noc:Noc_2669 lipoprotein releasing system, transmembrane protein, LolC/E family YP_742280.1 PFAM: sugar fermentation stimulation protein; KEGG: noc:Noc_2279 sugar fermentation stimulation protein YP_742281.1 KEGG: sde:Sde_1807 hypothetical protein YP_742282.1 PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: gme:Gmet_0711 porphyromonas-type peptidyl-arginine deiminase YP_742283.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gsu:GSU1027 glycosyl hydrolase, family 10 YP_742284.1 PFAM: DAHP synthetase I/KDSA; KEGG: nmu:Nmul_A0091 3-deoxy-7-phosphoheptulonate synthase YP_742285.1 TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1, IF1 family protein; KEGG: noc:Noc_2598 translation initiation factor IF-1 YP_742286.1 KEGG: mca:MCA1789 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase YP_742287.1 involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA YP_742288.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: xcv:XCV0263 transcriptional regulator, LysR family YP_742289.1 PFAM: NUDIX hydrolase; KEGG: mfa:Mfla_2114 NUDIX hydrolase YP_742290.1 PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PP-loop domain protein; KEGG: bps:BPSL2889 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_742291.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis YP_742292.2 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate YP_742293.1 TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: hch:HCH_06874 aconitate hydratase 1 YP_742294.1 PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_04990 outer membrane protein and related peptidoglycan-associated (LipO)protein YP_742295.1 KEGG: sat:SYN_02998 esterase YP_742296.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: mag:amb2392 predicted pyrophosphatase YP_742297.1 PFAM: regulatory protein, TetR; KEGG: sth:STH2189 TetR family transcriptional regulator YP_742298.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: bur:Bcep18194_A5556 glutathione S-transferase-like YP_742299.1 PFAM: Tetratricopeptide TPR_2 repeat protein YP_742300.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_742301.1 KEGG: sil:SPO1614 hypothetical protein YP_742302.1 PFAM: dihydroorotate dehydrogenase; KEGG: mfa:Mfla_0506 dihydroorotate oxidase YP_742303.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: eba:ebA4391 chromosome partitioning protein, ParA family protein YP_742304.1 TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: hch:HCH_02605 membrane-bound lytic murein transglycosylase B YP_742305.1 KEGG: dsy:DSY1917 hypothetical protein YP_742306.1 KEGG: csa:Csal_2331 hypothetical protein YP_742307.1 PFAM: LemA family protein; KEGG: noc:Noc_1832 LemA YP_742308.1 PFAM: Patatin; KEGG: nmu:Nmul_A0164 patatin YP_742309.1 KEGG: pae:PA5496 hypothetical protein YP_742310.1 KEGG: mca:MCA2543 ribonucleoside reductase, intein-containing; TIGRFAM: Protein splicing (intein) site; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; SMART: Hedgehog/intein hint domain protein YP_742311.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: eba:ebA6834 conserved hypothetical protein, s1 RNA binding domain protein YP_742312.1 PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; KEGG: vpa:VP1259 ATP-dependent helicase YP_742313.1 KEGG: csa:Csal_2568 transcriptional regulator-like protein YP_742314.1 KEGG: csa:Csal_1457 hypothetical protein YP_742315.1 KEGG: csa:Csal_1456 hypothetical protein YP_742317.1 KEGG: tcx:Tcr_1933 uncharacterized conserved coiled coil protein YP_742318.1 PFAM: carbon storage regulator; KEGG: mca:MCA0391 carbon storage regulator YP_742319.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_742320.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_742321.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_742322.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_742323.1 PFAM: CinA domain protein; KEGG: tbd:Tbd_2195 CinA protein YP_742324.1 This protein performs the mismatch recognition step during the DNA repair process YP_742325.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: xac:XAC1762 ferredoxin YP_742326.1 KEGG: noc:Noc_2253 thiol-disulfide interchange protein DsbC YP_742327.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase; phage integrase domain protein SAM domain protein; KEGG: pae:PA3738 integrase/recombinase XerD YP_742328.1 PFAM: band 7 protein; KEGG: tbd:Tbd_0490 stomatin-like transmembrane protein, band 7 protein YP_742329.1 KEGG: xac:XAC0889 hypothetical protein YP_742330.1 PFAM: Fe-S metabolism associated SufE; KEGG: rru:Rru_A3475 Fe-S metabolism associated SufE YP_742332.1 PFAM: alpha/beta hydrolase fold; KEGG: mag:amb4214 lysophospholipase YP_742333.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: rru:Rru_A2307 twin-arginine translocation pathway signal YP_742335.1 PFAM: Haem oxygenase; KEGG: dra:DRA0052m heme oxygenase YP_742336.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-2 domain protein; KEGG: rsp:RSP_4191 phytochrome sensor diguanylate cyclase/phosphodiesterase YP_742337.1 PFAM: alpha/beta hydrolase fold; KEGG: sru:SRU_2682 3-oxoadipate enol-lactone hydrolase YP_742338.1 KEGG: nmu:Nmul_A1979 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_742339.1 KEGG: sme:SMc00257 probable outer-membrane protein YP_742340.1 PFAM: FAD dependent oxidoreductase; KEGG: bga:BG0778 hypothetical protein YP_742341.1 3'-5' exoribonuclease specific for small oligoribonuclotides YP_742342.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: csa:Csal_1269 GTPase EngC YP_742343.1 PFAM: OmpA/MotB domain protein; KEGG: pfo:Pfl_0513 OmpA/MotB YP_742344.1 KEGG: rso:RSp1411 probable chemotaxis (motility protein A) transmembrane YP_742345.1 KEGG: sde:Sde_2025 signal transduction protein YP_742346.1 PFAM: histidine triad (HIT) protein; KEGG: ade:Adeh_0180 histidine triad (HIT) protein YP_742347.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_742348.1 PFAM: conserved hypothetical protein 103; KEGG: plu:plu3840 hypothetical protein YP_742349.1 KEGG: pae:PA1532 DNA polymerase subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase YP_742350.1 PFAM: protein of unknown function DUF37; KEGG: csa:Csal_1884 protein of unknown function DUF37 YP_742351.1 PFAM: Rhodanese domain protein; KEGG: ade:Adeh_0436 rhodanese-like YP_742353.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent YP_742354.1 PFAM: rRNA methylase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sru:SRU_1525 rRNA methylase superfamily YP_742355.1 PFAM: UspA domain protein; KEGG: plt:Plut_0297 hypothetical protein YP_742356.1 PFAM: peptidase S16, lon domain protein; KEGG: mca:MCA0853 ATP-dependent protease YP_742357.1 PFAM: toxic anion resistance family protein; KEGG: hch:HCH_05411 uncharacterized protein involved in tellurite resistance YP_742359.1 KEGG: pol:Bpro_0272 cupin region YP_742360.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tdn:Tmden_0645 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor YP_742361.1 KEGG: vch:VC1560 catalase/peroxidase; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase YP_742364.1 PFAM: glycosyl transferase, family 2; KEGG: nmu:Nmul_A1366 glycosyl transferase, family 2 YP_742365.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis YP_742367.1 PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_1203 dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like YP_742368.1 PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: pol:Bpro_0339 integrase, catalytic region YP_742369.1 PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22) YP_742370.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: mta:Moth_2240 IstB-like ATP-binding protein YP_742371.1 PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: pol:Bpro_0339 integrase, catalytic region YP_742372.1 PFAM: phage integrase; KEGG: lpn:lpg1229 site specific recombinase YP_742373.1 PFAM: transposase IS3/IS911 family protein; KEGG: sdn:Sden_2169 hypothetical protein YP_742374.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_742375.1 PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2 YP_742376.1 KEGG: rfr:Rfer_1364 hypothetical protein YP_742377.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD/DEAH box helicase domain protein; KEGG: eba:ebA666 helicase (SNF2 family) YP_742378.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: eba:ebA670 probable methylation subunit, type III restriction-modification system YP_742379.1 PFAM: SMC domain protein; PHP C-terminal domain protein; KEGG: mca:MCA3009 PHP N-terminal domain protein YP_742380.1 PFAM: AAA-4 family protein; KEGG: mca:MCA3010 hypothetical protein YP_742381.1 SMART: DEAD/DEAH box helicase domain protein; KEGG: eba:ebA675 conserved hypothetical protein, potential type III restriction enzyme YP_742382.1 KEGG: noc:Noc_2963 hypothetical protein YP_742383.1 KEGG: noc:Noc_2964 hypothetical protein YP_742385.1 KEGG: chy:CHY_0840 lipoprotein YP_742386.1 PFAM: glycosyl transferase, family 2; KEGG: nmu:Nmul_A1366 glycosyl transferase, family 2 YP_742387.1 forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis YP_742389.1 PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; KEGG: sdy:SDY_3128 hypothetical protein YP_742390.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_742392.1 PFAM: phosphate-selective porin O and P; KEGG: xcb:XC_1529 polyphosphate-selective porin O YP_742394.1 PFAM: protein of unknown function DUF59; KEGG: noc:Noc_0972 protein of unknown function DUF59 YP_742395.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: aae:aq_234 Rieske-I iron sulfur protein YP_742396.1 PFAM: molybdopterin biosynthesis MoaE; KEGG: aci:ACIAD1904 molybdopterin converting factor, large subunit YP_742397.1 KEGG: gme:Gmet_3085 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_742398.1 PFAM: LytTr DNA-binding region; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: bxe:Bxe_A2142 transcriptional regulator, LytR/AlgR family YP_742399.1 PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: bxe:Bxe_A2144 carbon monoxide dehydrogenase, medium subunit (CoxM) YP_742400.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bxe:Bxe_A2145 carbon monoxide dehydrogenase, small subunit (CoxS) YP_742401.1 TIGRFAM: carbon-monoxide dehydrogenase, large subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; carbon monoxide dehydrogenase subunit G; KEGG: bxe:Bxe_A2146 carbon monoxide dehydrogenase form I, large subunit YP_742402.1 PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: bxe:Bxe_A2148 MoxR-like ATPase, CoxD YP_742403.1 PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor, type A; KEGG: bxe:Bxe_C0034 carbon monoxide dehydrogenase, CoxE subunit YP_742404.1 PFAM: protein of unknown function DUF182; KEGG: bxe:Bxe_C0035 carbon monoxide dehydrogenase, CoxF subunit YP_742405.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: mta:Moth_2003 uncharacterized MobA-related protein-like YP_742406.1 PFAM: protein of unknown function DUF182; KEGG: ape:APE2227 xanthine dehydrogenase accessory factor YP_742407.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: bps:BPSL2373 NifU family protein YP_742408.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: tte:TTE1262 predicted ATPases involved in pili biogenesis, PilB homologs YP_742409.1 KEGG: syf:Synpcc7942_1158 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_742410.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: tbd:Tbd_1581 secretion protein HlyD YP_742411.1 PFAM: protein of unknown function DUF214; KEGG: tbd:Tbd_1582 ABC transporter, permease YP_742412.1 KEGG: hch:HCH_05283 hypothetical protein YP_742413.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1583 ABC transporter ATPase YP_742414.1 PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: rpc:RPC_1332 oligopeptidase B YP_742415.1 PFAM: AMP-dependent synthetase and ligase; KEGG: hma:rrnAC0573 long-chain fatty-acid-CoA ligase YP_742416.1 PFAM: TatD-related deoxyribonuclease; KEGG: xcb:XC_0310 type V secretory pathway protein YP_742417.1 TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: noc:Noc_2960 dihydrouridine synthase TIM-barrel protein YjbN YP_742418.1 PFAM: glutaredoxin 2; KEGG: mca:MCA1544 hypothetical protein YP_742419.1 KEGG: csa:Csal_1565 ErfK/YbiS/YcfS/YnhG YP_742420.1 KEGG: csa:Csal_1564 hypothetical protein YP_742421.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: csa:Csal_1566 ErfK/YbiS/YcfS/YnhG YP_742422.1 PFAM: NUDIX hydrolase; KEGG: eba:ebA5123 hypothetical protein YP_742423.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_742424.1 SMART: PDZ/DHR/GLGF domain protein; KEGG: nmu:Nmul_A2382 PDZ/DHR/GLGF YP_742425.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: High potential iron-sulfur protein; KEGG: rso:RSc3086 probable high potential iron-sulfur (hipip) signal peptide protein YP_742426.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: High potential iron-sulfur protein; KEGG: rso:RSc3086 probable high potential iron-sulfur (hipip) signal peptide protein YP_742427.1 KEGG: pae:PA1040 hypothetical protein YP_742428.1 PFAM: alpha/beta hydrolase fold; KEGG: rru:Rru_A0559 alpha/beta hydrolase fold YP_742429.1 TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: mca:MCA0774 aminopeptidase N YP_742430.1 KEGG: csa:Csal_1519 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_742431.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: cvi:CV2082 enoyl-CoA hydratase YP_742433.1 KEGG: cvi:CV0192 hypothetical protein YP_742434.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: pae:PA3474 conserved hypothetical protein YP_742435.1 TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: rme:Rmet_0126 transcriptional regulators, TraR/DksA family YP_742436.1 PFAM: GTP-binding protein, HSR1-related; KEGG: ppr:PBPRA1571 hypothetical protein YP_742437.1 KEGG: ana:all3530 hypothetical protein YP_742438.1 PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; KEGG: aae:aq_999 long-chain-fatty-acid CoA ligase YP_742439.1 PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: bms:BR1098 membrane protein YP_742440.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: xcb:XC_3277 hypothetical protein YP_742441.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: mca:MCA2450 molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_742442.1 KEGG: csa:Csal_2123 glycosyl transferase, group 1 YP_742443.1 PFAM: glutamine amidotransferase class-I; KEGG: mlo:mll8746 hypothetical protein YP_742444.1 PFAM: Smr protein/MutS2; KEGG: deh:cbdb_A1156 hypothetical protein YP_742445.1 PFAM: Class I peptide chain release factor; KEGG: ppr:PBPRB0779 hypothetical protein YP_742446.1 KEGG: mca:MCA0019 hypothetical protein YP_742447.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: nwi:Nwi_1896 UbiE/COQ5 methyltransferase YP_742448.1 PFAM: protein of unknown function DUF188; KEGG: hch:HCH_06960 hypothetical protein YP_742449.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: rme:Rmet_0456 DEAD/DEAH box helicase-like protein YP_742450.1 KEGG: nme:NMB1278 site-specific recombinase YP_742451.1 catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine YP_742452.1 TIGRFAM: YbhB and YbcL; PFAM: PEBP family protein; KEGG: hch:HCH_02825 phospholipid-binding protein YP_742453.1 PFAM: KaiB domain protein; KEGG: syn:sll0486 circadian clock protein KaiB homolog YP_742454.1 KEGG: mag:amb1535 response regulator containing a CheY-like receiver domain and a GGDEF domain; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_742455.1 KEGG: rfr:Rfer_1021 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_742456.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MASE1 domain protein; KEGG: rpa:RPA4247 two component low oxygen sensor histidine kinase with PAS domains, FixL YP_742457.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: mlo:mll6606 response regulator FixJ YP_742458.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: pca:Pcar_2558 signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like YP_742459.1 PFAM: Na+/solute symporter; KEGG: hch:HCH_06692 Na+/proline symporter YP_742460.1 KEGG: dsy:DSY3490 hypothetical protein YP_742461.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: rfr:Rfer_3389 alkylhydroperoxidase YP_742463.1 KEGG: noc:Noc_1301 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD/DEAH box helicase domain protein YP_742464.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: pst:PSPTO2610 phosphoesterase YP_742465.1 catalyzes the formation of serine from phosphoserine; also has phosphoserine:homoserine phosphotransferase activity YP_742466.1 PFAM: protein of unknown function UPF0005; KEGG: eba:ebA4143 hypothetical protein YP_742467.1 PFAM: Sporulation domain protein; SMART: AAA ATPase; KEGG: pfo:Pfl_0412 hypothetical protein YP_742468.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: mlo:mlr1196 probable transcriptional regulator YP_742469.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_2645 methyltransferase type 11 YP_742470.1 PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO5216 RNA polymerase sigma factor YP_742471.1 KEGG: tfu:Tfu_0549 anti-sigma factor YP_742472.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_2645 methyltransferase type 11 YP_742473.1 PFAM: glutamine amidotransferase class-I; KEGG: xfa:XF0560 glutamine amidotransferase YP_742474.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: mfa:Mfla_0476 FAD linked oxidase-like protein YP_742475.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ppr:PBPRB1001 hypothetical protein YP_742476.1 PFAM: protein of unknown function DUF151; KEGG: dde:Dde_2379 hypothetical protein YP_742477.1 PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: bxe:Bxe_A4382 two component transcriptional regulator, fis family YP_742478.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: neu:NE1314 probable two-component sensor YP_742479.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_1999 ABC transporter related YP_742480.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_1998 ABC transporter related YP_742481.1 KEGG: rru:Rru_A0612 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_742482.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA YP_742483.1 SMART: Rhodanese domain protein; KEGG: sco:SCO5854 thiosulfate sulfurtransferase YP_742484.1 KEGG: pfo:Pfl_0128 hypothetical protein YP_742485.1 KEGG: tbd:Tbd_2490 hypothetical protein YP_742486.1 KEGG: tbd:Tbd_2487 hypothetical protein YP_742488.1 KEGG: mag:amb3366 probable taurine catabolism dioxygenase YP_742489.1 KEGG: mag:amb3367 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region YP_742490.1 KEGG: mag:amb3368 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region YP_742491.1 PFAM: DsrE family protein; KEGG: tbd:Tbd_2483 DsrE protein YP_742492.1 PFAM: DsrE family protein; KEGG: mag:amb3370 uncharacterized protein involved in the oxidation of intracellular sulfur YP_742493.1 PFAM: DsrH family protein; KEGG: cch:Cag_1950 DsrH protein YP_742494.1 PFAM: DsrC family protein; KEGG: tbd:Tbd_2480 sulfite reductase YP_742495.1 PFAM: Nitrate reductase, gamma subunit; KEGG: tbd:Tbd_2479 DsrM protein YP_742496.1 KEGG: mag:amb3374 Fe-S oxidoreductase YP_742497.1 unknown function YP_742498.1 KEGG: mag:amb3376 Hdr-like menaquinol oxidoreductase cytochrome c subunit YP_742499.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mag:amb3377 Fe-S-cluster-containing hydrogenase components 1 YP_742500.1 PFAM: Polysulphide reductase, NrfD; KEGG: mag:amb3378 Hdr-like menaquinol oxidoreductase integral membrane subunit YP_742501.1 PFAM: glycosyl transferase, family 3; KEGG: ppu:PP3997 hypothetical protein YP_742502.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: mag:amb3622 cobyrinic acid a,c-diamide synthase YP_742503.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: tbd:Tbd_2201 probable transmembrane protein YP_742504.1 TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: eba:ebA4484 sulfate transporter YP_742505.1 PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; sigma-70 region 4 domain protein; KEGG: tbd:Tbd_2464 two component transcriptional regulator, LuxR family YP_742506.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rme:Rmet_2086 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ YP_742508.1 PFAM: SirA family protein; KEGG: tbd:Tbd_0574 hypothetical protein YP_742509.1 PFAM: cytochrome c, class I; KEGG: vpa:VP1221 cytochrome subunit of sulfide dehydrogenase precursor YP_742510.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cch:Cag_2004 sulfide dehydrogenase, flavoprotein subunit YP_742511.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: tbd:Tbd_0570 DMSO reductase chain A YP_742512.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tbd:Tbd_0571 DMSO reductase chain B YP_742513.1 PFAM: DMSO reductase anchor subunit (DmsC); KEGG: tbd:Tbd_0572 DMSO reductase chain C YP_742514.1 PFAM: NapC/NirT cytochrome c domain protein; KEGG: rpc:RPC_1875 NapC/NirT cytochrome c-like YP_742515.1 TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mfa:Mfla_0652 uroporphyrin-III C-methyltransferase YP_742516.1 PFAM: Rhodanese domain protein; KEGG: plt:Plut_0032 rhodanese-like YP_742517.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: tcx:Tcr_0603 sulfur oxidation protein SoxY-like YP_742518.1 KEGG: bja:bll1012 sulfur oxidation protein YP_742519.1 KEGG: rme:Rmet_4060 heme exporter protein CcmA; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase YP_742520.1 TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dar:Daro_3992 cytochrome c-type biogenesis protein CcmB YP_742521.1 TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: rme:Rmet_4058 heme exporter protein CcmC YP_742522.1 PFAM: CcmE/CycJ protein; KEGG: rfr:Rfer_0041 CcmE/CycJ protein YP_742523.1 TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: neu:NE0768 cytochrome c-type biogenesis protein (CcmF) YP_742524.1 TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: mca:MCA0417 thiol:disulfide interchange protein DsbE YP_742525.1 PFAM: cytochrome C biogenesis protein; KEGG: xac:XAC1674 C-type cytochrome biogenesis protein YP_742526.1 PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: eba:ebA3526 cyctochrome C biogenesis protein YP_742527.1 PFAM: protein of unknown function DUF218; KEGG: ana:all1816 hypothetical protein YP_742528.1 KEGG: tbd:Tbd_0101 peptidase S13, D-Ala-D-Ala carboxypeptidase C; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C YP_742529.1 PFAM: UvrD/REP helicase; KEGG: ade:Adeh_0097 UvrD/REP helicase YP_742530.1 PFAM: protein of unknown function UPF0118; KEGG: pca:Pcar_3090 hypothetical protein YP_742531.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4717 sensor histidine kinase YP_742532.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO4718 sigma-54 dependent response regulator YP_742533.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation YP_742535.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_742536.1 TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: mca:MCA0592 nitrite reductase [NAD(P)H], large subunit YP_742537.1 TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: mca:MCA0591 nitrite reductase [NAD(P)H], small subunit YP_742538.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rso:RSp1219 probable nitrate reductase large subunit oxidoreductase YP_742539.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: mca:MCA0589 nitrate transporter YP_742540.1 TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tbd:Tbd_2273 nitrate transport permease YP_742541.1 KEGG: sme:SMa0581 nitrate transport ATP binding protein, probable; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase YP_742542.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pst:PSPTO3344 siroheme synthase YP_742543.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: rpa:RPA4033 uroporphyrinogen III synthase HEM4 YP_742544.1 PFAM: ANTAR domain protein; Nitrate and nitrite sensing domain protein; KEGG: eca:ECA2995 nitrate-and nitrite-responsive positive regulator YP_742545.1 KEGG: noc:Noc_0497 membrane protein-like YP_742546.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: pae:PA2613 ATPase YP_742547.1 PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: eba:ebA7039 outer membrane lipoprotein carrier protein LolA YP_742548.1 PFAM: cell divisionFtsK/SpoIIIE; KEGG: sde:Sde_1693 cell division protein FtsK YP_742549.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys YP_742550.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate YP_742552.1 KEGG: gme:Gmet_0724 ribonuclease Z YP_742553.1 TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: cps:CPS_3094 thioesterase YP_742554.1 CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis YP_742555.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: ilo:IL1542 acyl-CoA dehydrogenase YP_742556.1 KEGG: csa:Csal_1112 hypothetical protein YP_742557.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gvi:glr2385 probable acetyltransferase YP_742558.1 TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bce:BC2248 acetylornithine deacetylase YP_742559.1 PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: noc:Noc_2221 peptidase S15 YP_742560.1 KEGG: noc:Noc_2222 hypothetical protein YP_742561.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pfl:PFL_5773 conserved hypothetical protein TIGR00275 YP_742562.1 PFAM: glutamine amidotransferase, class-II; KEGG: pae:PA1307 hypothetical protein YP_742563.1 PFAM: peptidase M14, carboxypeptidase A; KEGG: syf:Synpcc7942_1581 peptidase M14, carboxypeptidase A YP_742564.1 PFAM: protein of unknown function UPF0027; KEGG: mca:MCA0195 hypothetical protein YP_742565.1 PFAM: protein of unknown function DUF101; KEGG: tbd:Tbd_2360 tRNA nucleotidyltransferase/poly(A) polymerase YP_742567.1 KEGG: tbd:Tbd_1465 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_742568.1 KEGG: rfr:Rfer_0391 hypothetical protein YP_742569.1 PFAM: phosphoribosyltransferase; KEGG: sme:SMc01463 hypothetical protein YP_742570.1 KEGG: tbd:Tbd_1464 capsule biosynthesis protein; K07282 poly-gamma-glutamate synthesis protein (capsule biosynthesis protein) YP_742571.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues YP_742572.1 KEGG: bur:Bcep18194_C6952 hypothetical protein YP_742573.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: xac:XAC2952 succinyl-diaminopimelate desuccinylase YP_742574.1 PFAM: PhoU family protein; KEGG: syf:Synpcc7942_1912 photosystem I reaction center subunit XII YP_742575.1 PFAM: Na+/Pi-cotransporter; KEGG: rba:RB11050 NptA protein YP_742576.1 PFAM: CBS domain containing protein; KEGG: bja:blr7332 inosine-5'-monophosphate dehydrogenase YP_742578.1 KEGG: ana:alr3311 hypothetical protein YP_742579.1 KEGG: gme:Gmet_1144 hypothetical protein YP_742580.1 KEGG: gme:Gmet_1142 hypothetical protein YP_742581.1 KEGG: gme:Gmet_1141 hypothetical protein YP_742582.1 KEGG: gme:Gmet_1140 hypothetical protein YP_742583.1 KEGG: gme:Gmet_1139 hypothetical protein YP_742584.1 KEGG: gme:Gmet_1138 hypothetical protein YP_742585.1 KEGG: gme:Gmet_1137 hypothetical protein YP_742586.1 KEGG: gme:Gmet_1136 hypothetical protein YP_742587.1 KEGG: gme:Gmet_1135 hypothetical protein YP_742589.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: gme:Gmet_1133 AAA ATPase, central region YP_742590.1 KEGG: gme:Gmet_1132 hypothetical protein YP_742591.1 KEGG: ani:AN5649.2 hypothetical protein YP_742592.1 KEGG: gme:Gmet_1130 hypothetical protein YP_742593.1 TIGRFAM: conserved hypothetical phage tail protein; KEGG: gme:Gmet_1129 hypothetical protein YP_742594.1 PFAM: phage tail sheath protein; KEGG: gme:Gmet_1128 phage tail sheath protein YP_742595.1 PFAM: UbiA prenyltransferase; KEGG: cps:CPS_4233 UbiA prenyltransferase YP_742596.1 KEGG: ilo:IL2350 predicted permease YP_742597.1 PFAM: Patatin; KEGG: nmu:Nmul_A2472 patatin YP_742598.1 KEGG: rsp:RSP_3760 hypothetical protein YP_742599.1 KEGG: pfl:PFL_3832 hypothetical protein YP_742600.1 PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: nmu:Nmul_A0938 GreA/GreB family elongation factor YP_742601.1 KEGG: hch:HCH_04531 hypothetical protein YP_742603.1 KEGG: par:Psyc_1159 hypothetical protein YP_742604.1 PFAM: Gluconate transporter; Citrate transporter; KEGG: pcr:Pcryo_1595 GntP family transporter YP_742605.1 PFAM: Patatin; KEGG: mlo:mll3840 hypothetical protein YP_742606.1 KEGG: ilo:IL2353 predicted membrane protein YP_742607.1 transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis YP_742608.1 PFAM: CBS domain containing protein; Cl- channel, voltage-gated family protein; KEGG: rru:Rru_A1534 Cl-channel, voltage gated YP_742609.1 KEGG: rsp:RSP_0161 spermidine/putrescine-binding periplasmic protein YP_742610.1 PFAM: fatty acid desaturase; KEGG: nha:Nham_2541 fatty acid desaturase YP_742611.1 PFAM: GCN5-related N-acetyltransferase; KEGG: jan:Jann_3674 acetyltransferase, GNAT family YP_742612.1 PFAM: regulatory protein, ArsR; KEGG: mfa:Mfla_2614 transcriptional regulator, ArsR family YP_742613.1 KEGG: mfa:Mfla_2613 hypothetical protein YP_742614.1 PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: ava:Ava_B0058 glutathione-dependent formaldehyde-activating, GFA YP_742615.1 KEGG: par:Psyc_1673 hypothetical protein YP_742616.1 KEGG: tbd:Tbd_2631 methionine sulfoxide reductase B; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B YP_742617.1 PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2 YP_742618.1 PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like YP_742619.1 KEGG: rsp:RSP_2006 hypothetical protein YP_742620.1 TIGRFAM: addiction module toxin, Txe/YoeB family; addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; Addiction module toxin, Txe/YoeB; KEGG: eba:ebD102 hypothetical protein YP_742621.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: eba:ebD103 antitoxin of toxin-antitoxin stability system YP_742623.1 PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD/DEAH box helicase domain protein; KEGG: mfa:Mfla_2607 protein of unknown function DUF450 YP_742625.1 PFAM: restriction modification system DNA specificity domain; KEGG: ilo:IL0643 restriction endonuclease S subunit YP_742626.1 PFAM: N-6 DNA methylase; KEGG: mfa:Mfla_2604 N-6 DNA methylase YP_742627.1 PFAM: protein of unknown function DUF867; KEGG: sha:SH2068 hypothetical protein YP_742629.1 KEGG: xcv:XCV0216 hypothetical protein YP_742630.1 KEGG: pcr:Pcryo_2512 hypothetical protein YP_742631.1 KEGG: sth:STH2171 hypothetical protein YP_742632.1 PFAM: transposase; KEGG: eba:p2A174 transposase YP_742633.1 TIGRFAM: integron integrase; PFAM: phage integrase; KEGG: gme:Gmet_3006 integron integrase YP_742634.1 TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: noc:Noc_1642 transcription-repair coupling factor YP_742635.1 KEGG: cbu:CBU_1073 hypothetical protein YP_742636.1 PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: dvu:DVU2677 sensor histidine kinase/response regulator YP_742637.1 PFAM: response regulator receiver; KEGG: bja:bll7479 two-component response regulator YP_742638.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: mca:MCA0301 lysyl-tRNA synthetase YP_742639.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: stm:STM3041c peptide chain release factor 2 YP_742640.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pae:PA3177 hypothetical protein YP_742641.1 KEGG: psb:Psyr_3394 hypothetical protein YP_742642.1 KEGG: hch:HCH_04371 uncharacterized flagellar protein FhlB cytoplasmic domain YP_742643.1 KEGG: noc:Noc_2154 hypothetical protein YP_742644.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_742645.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: noc:Noc_2250 glutamyl-tRNA synthetase YP_742646.1 TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: xac:XAC1036 UDP-2,3-diacylglucosamine hydrolase YP_742647.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: mag:amb3197 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase YP_742648.1 PFAM: protein of unknown function DUF461; KEGG: dar:Daro_1578 protein of unknown function DUF461 YP_742649.1 PFAM: electron transport protein SCO1/SenC; KEGG: tcx:Tcr_1565 electron transport protein SCO1/SenC YP_742650.1 KEGG: dar:Daro_1576 hypothetical protein YP_742652.1 PFAM: peptidase, membrane zinc metallopeptidase, KEGG: tcx:Tcr_1976 hypothetical protein YP_742653.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: pae:PA3725 single-stranded-DNA-specific exonuclease RecJ YP_742654.1 KEGG: cvi:CV2476 probable signal peptide protein YP_742655.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_742656.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_742657.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: tcx:Tcr_1252 aminotransferase, class I and II YP_742658.1 PFAM: protein of unknown function DUF498; KEGG: cbu:CBU_0859 hypothetical protein YP_742659.1 TIGRFAM: RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: pae:PA3622 sigma factor RpoS YP_742660.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: bte:BTH_I2225 lipoprotein NlpD YP_742661.1 KEGG: ilo:IL0747 hypothetical protein YP_742662.1 KEGG: ppu:PP1621 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_742663.1 catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate YP_742664.1 PFAM: Smr protein/MutS2; KEGG: noc:Noc_1906 Smr protein/MutS2-like YP_742665.1 KEGG: noc:Noc_2021 PAS sensor diguanylate cyclase/phophodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_742666.1 PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: hch:HCH_05220 response regulator YP_742667.1 KEGG: mag:amb3291 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_742668.1 PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: sme:SMa1686 two-component response regulator YP_742669.1 catalyzes the modification of U13 in tRNA(Glu) YP_742670.1 KEGG: mca:MCA2518 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase YP_742671.1 TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: noc:Noc_0854 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_742672.1 PFAM: Septum formation initiator; KEGG: noc:Noc_0853 septum formation initiator YP_742673.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_742674.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis YP_742675.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_742676.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase-like; PFAM: PP-loop domain protein; KEGG: noc:Noc_0849 tRNA(Ile)-lysidine synthase YP_742677.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_742678.1 PFAM: type IV pilus assembly PilZ; KEGG: sde:Sde_3217 modification methylase HemK YP_742679.1 TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: syn:slr1753 hypothetical protein YP_742680.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cyb:CYB_0820 proton transporter, ExbD/TolR family YP_742681.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sde:Sde_2060 GTP cyclohydrolase I YP_742682.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: jan:Jann_2130 MotA/TolQ/ExbB proton channel YP_742683.1 KEGG: mca:MCA1286 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type YP_742684.1 PFAM: ribonuclease HII/HIII; KEGG: sdy:SDY_0199 RNAse HII YP_742685.1 catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM YP_742686.1 catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis YP_742687.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_742688.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: mca:MCA2446 outer membrane protein OmpH YP_742689.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: noc:Noc_0816 outer membrane protein YP_742690.1 TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: noc:Noc_0815 peptidase M50, membrane-associated zinc metallopeptidase YP_742691.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_742692.1 PFAM: phosphatidate cytidylyltransferase; KEGG: cbu:CBU_1381 phosphatidate cytidylyltransferase YP_742693.1 KEGG: mca:MCA0571 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_742694.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_742695.1 Catalyzes the phosphorylation of UMP to UDP YP_742696.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_742697.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_742698.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pae:PA3657 methionine aminopeptidase YP_742699.1 KEGG: pae:PA3658 protein-PII uridylyltransferase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT domain protein; DNA polymerase, beta domain protein region; metal-dependent phosphohydrolase, HD sub domain; GlnD PII-uridylyltransferase; SMART: metal-dependent phosphohydrolase, HD region YP_742700.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate YP_742701.1 KEGG: mca:MCA1490 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; PFAM: transferase hexapeptide repeat containing protein YP_742702.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica. YP_742703.1 KEGG: sth:STH2141 alkaline phosphatase YP_742704.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_742705.1 PFAM: Ppx/GppA phosphatase; KEGG: noc:Noc_2394 exopolyphosphatase YP_742706.1 TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: gvi:gll1752 hypothetical protein YP_742707.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: xcv:XCV1477 signal transduction protein YP_742708.1 TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: pae:PA1548 hypothetical protein YP_742709.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ppu:PP4261 cation-transporting P-type ATPase YP_742710.1 KEGG: pae:PA1550 hypothetical protein YP_742711.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tbd:Tbd_0639 probable iron-sulfur 4Fe-4S ferredoxin transmembrane protein YP_742712.1 KEGG: eba:ebD128 hypothetical protein YP_742713.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: eba:ebA5134 cytochrome-cbb3 oxidase, subunit III YP_742714.1 PFAM: Cbb3-type cytochrome oxidase component; KEGG: par:Psyc_0776 probable cytochrome c, oxidase component YP_742715.1 TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: pae:PA1553 probable cytochrome c oxidase subunit YP_742716.1 CcoN; FixN YP_742717.1 PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: mca:MCA0468 MoxR protein YP_742718.1 PFAM: protein of unknown function DUF58; KEGG: dar:Daro_2518 protein of unknown function DUF58 YP_742719.1 PFAM: transglutaminase domain protein; KEGG: dar:Daro_2519 transglutaminase-like YP_742720.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: neu:NE0371 glycerophosphoryl diester phosphodiesterase YP_742721.1 TIGRFAM: transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: noc:Noc_1648 iron-sulphur cluster assembly transcription factor IscR YP_742722.1 PFAM: protein of unknown function DUF1249; KEGG: mca:MCA2528 hypothetical protein YP_742723.1 PFAM: protein of unknown function DUF299; KEGG: pae:PA1769 hypothetical protein YP_742724.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_742725.1 PFAM: porin, Gram-negative type; KEGG: tbd:Tbd_0448 outer membrane protein (porin) YP_742726.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; KEGG: bbr:BB3283 probable oxidoreductase YP_742728.1 PFAM: FAD linked oxidase domain protein; KEGG: psb:Psyr_3331 glycolate oxidase subunit GlcD YP_742729.1 PFAM: FAD linked oxidase domain protein; KEGG: csa:Csal_2688 FAD linked oxidase-like protein YP_742730.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: noc:Noc_0841 hypothetical protein YP_742731.1 PFAM: Rhodanese domain protein; KEGG: noc:Noc_0191 thiosulfate sulfurtransferase YP_742732.1 PFAM: dihydrodipicolinate reductase; KEGG: pst:PSPTO4503 dihydrodipicolinate reductase YP_742733.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_742734.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_742735.1 PFAM: GrpE protein; KEGG: noc:Noc_2812 GrpE protein YP_742736.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: noc:Noc_2813 negative regulator of class I heat shock protein YP_742737.1 catalyzes the phosphorylation of NAD to NADP YP_742738.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: pst:PSPTO4507 DNA repair protein RecN YP_742739.1 PFAM: ferric-uptake regulator; KEGG: lpp:lpp0438 ferric uptake regulation protein YP_742740.1 PFAM: SmpA/OmlA domain protein; KEGG: mca:MCA2622 small protein A YP_742741.1 PFAM: protein of unknown function UPF0125; KEGG: noc:Noc_1196 hypothetical protein YP_742742.1 PFAM: cyclase/dehydrase; KEGG: lpp:lpp0435 hypothetical protein YP_742743.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_742746.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rba:RB9942 conserved hypothetical protein- SAM-dependent methyltransferase YP_742747.1 PFAM: peptidase M42 family protein; KEGG: dge:Dgeo_1994 peptidase M42 YP_742748.1 KEGG: ret:RHE_CH00964 hypothetical protein YP_742749.1 KEGG: csa:Csal_1457 hypothetical protein YP_742750.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: csa:Csal_0039 protein of unknown function DUF6, transmembrane YP_742751.1 KEGG: xac:XAC4327 urea amidolyase YP_742752.1 KEGG: nmu:Nmul_A0942 hypothetical protein YP_742753.1 PFAM: regulatory protein, MarR; KEGG: nwi:Nwi_0565 transcriptional regulatory protein, MarR family YP_742755.1 PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_0163 ABC transporter related YP_742756.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mfa:Mfla_1392 molybdate ABC transporter, permease YP_742757.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: mfa:Mfla_1391 molybdenum ABC transporter, periplasmic molybdate-binding protein YP_742758.1 KEGG: mag:amb0850 xanthine and CO dehydrogenase maturation factor YP_742759.1 PFAM: regulatory protein, LysR; KEGG: pol:Bpro_2496 transcriptional regulator, ModE family YP_742761.1 KEGG: dar:Daro_1938 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region YP_742762.1 KEGG: ppu:PP3319 sensory box protein/GGDEF domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_742763.1 KEGG: dar:Daro_0927 hypothetical protein YP_742764.1 KEGG: tel:tll1086 hypothetical protein YP_742765.1 KEGG: pae:PA3880 hypothetical protein YP_742766.1 PFAM: NnrS family protein; KEGG: neu:NE1696 hypothetical protein YP_742767.1 PFAM: Glutathione S-transferase, N-terminal domain; KEGG: cps:CPS_1910 glutathione S-transferase YP_742768.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: csa:Csal_1795 anion transporter YP_742769.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: dar:Daro_0926 histidine kinase, HAMP region:bacterial chemotaxis sensory transducer YP_742770.1 KEGG: cps:CPS_4073 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; SMART: AAA ATPase YP_742771.1 PFAM: cytochrome c assembly protein; KEGG: pst:PSPTO1471 hypothetical protein YP_742772.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: noc:Noc_0989 hypothetical protein YP_742773.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: csa:Csal_3140 TRAP dicarboxylate transporter-DctP subunit YP_742774.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: csa:Csal_3138 tripartite ATP-independent periplasmic transporter, DctQ component YP_742775.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: csa:Csal_3139 TRAP dicarboxylate transporter-DctM subunit YP_742776.1 KEGG: mca:MCA1309 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein YP_742777.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_742778.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_742779.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_742780.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_742781.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_742782.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_742784.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA YP_742785.1 KEGG: hch:HCH_01554 hypothetical protein YP_742786.1 KEGG: sdn:Sden_3099 hypothetical protein YP_742787.1 PFAM: pseudouridine synthase; KEGG: dar:Daro_2869 pseudouridine synthase YP_742788.1 KEGG: tcx:Tcr_0831 hypothetical protein YP_742789.1 KEGG: noc:Noc_2552 proton-translocating NADH-quinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_742790.1 KEGG: noc:Noc_2553 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I) YP_742791.1 KEGG: noc:Noc_2554 NADH-plastoquinone oxidoreductase, chain 5; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I) YP_742792.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: noc:Noc_2555 NADH-ubiquinone oxidoreductase, chain 4L YP_742793.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: noc:Noc_2556 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 YP_742794.1 Catalyzes the transfer of electrons from NADH to quinone YP_742795.1 PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: cbu:CBU_1441 NADH dehydrogenase I, H subunit YP_742796.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_742797.1 KEGG: lpp:lpp2831 NADH dehydrogenase I chain F; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit YP_742798.1 KEGG: noc:Noc_2561 NADH dehydrogenase (ubiquinone), 24 kDa subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit YP_742799.1 Catalyzes the transfer of electrons from NADH to quinone YP_742800.1 KEGG: xac:XAC2702 NADH dehydrogenase I chain C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit YP_742801.1 KEGG: neu:NE1776 respiratory-chain NADH dehydrogenase 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit YP_742802.1 PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: tcx:Tcr_0817 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 YP_742803.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: ilo:IL0971 biopolymer transport protein YP_742804.1 PFAM: triosephosphate isomerase; KEGG: dar:Daro_0947 triosephosphate isomerase YP_742805.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_742806.1 KEGG: bpm:BURPS1710b_1616 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS YP_742807.1 KEGG: mca:MCA1848 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_742808.1 PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pae:PA4752 cell division protein ftsj homolog (ribosomal RNA large subunit methyltransferase J) YP_742810.1 PFAM: protein of unknown function UPF0044; KEGG: vch:VC0635 RNA-binding protein containing KH domain YP_742811.1 KEGG: eba:ebA4818 hypothetical protein YP_742812.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_742813.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: noc:Noc_2572 carbamoyl-phosphate synthase, large subunit, glutamine-dependent YP_742814.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: vch:VC2390 carbamoyl-phosphate synthase, small subunit YP_742815.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pae:PA2812 ABC-2 type transport system ATP-binding protein YP_742816.1 PFAM: ABC-2 type transporter; KEGG: hch:HCH_04490 ABC-type multidrug transport system, permease component YP_742817.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_742818.1 PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: sil:SPO0367 DNA-binding protein, H-NS family YP_742819.1 KEGG: xoo:XOO4083 hypothetical protein YP_742820.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: ade:Adeh_1455 pyridoxamine 5'-phosphate oxidase YP_742821.1 PFAM: protein of unknown function DUF107; KEGG: nmu:Nmul_A1039 protein of unknown function DUF107 YP_742822.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pae:PA5281 probable hydrolase YP_742823.1 KEGG: hch:HCH_02528 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease YP_742824.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_742825.1 PFAM: Methyltransferase type 11; KEGG: pfl:PFL_3298 hypothetical protein YP_742826.1 PFAM: beta-lactamase domain protein; KEGG: neu:NE0138 metallo-beta-lactamase superfamily YP_742827.1 PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: ilo:IL1698 soluble lytic murein transglycosylase YP_742828.1 TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: pha:PSHAb0505 cell division topological specificity factor YP_742829.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pfo:Pfl_1694 septum site-determining protein MinD YP_742830.1 TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; Septum formation inhibitor MinC domain protein; KEGG: ppu:PP1734 septum site-determining protein MinC YP_742831.1 PFAM: peptidase S24, S26A and S26B; KEGG: son:SO0641 prophage MuSo1, transcriptional regulator, Cro/CI family YP_742833.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mac:MA1362 O-linked GlcNAc transferase YP_742835.1 PFAM: Na+/solute symporter; KEGG: csa:Csal_2927 Na+/solute symporter YP_742836.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase KEGG: mag:amb1544 predicted signal-transduction protein containing cAMP-binding and CBS domains YP_742837.1 PFAM: protein of unknown function DUF294, nucleotidyltransferase KEGG: rsp:RSP_0575 predicted signal transduction protein containing cyclic nucleotide-binding and CBS domains YP_742838.1 KEGG: pol:Bpro_4151 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: histidine kinase A domain protein domain protein; Exonuclease, RNase T and DNA polymerase III; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; Exonuclease YP_742839.1 molecular chaperone YP_742840.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: dar:Daro_3947 nickel responsive regulator YP_742841.1 KEGG: dar:Daro_3946 PAS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein YP_742842.1 PFAM: nickel-dependent hydrogenase, large subunit; KEGG: mag:amb1942 uptake hydrogenase YP_742843.1 PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: rfr:Rfer_4120 uptake hydrogenase accessory protein HupU YP_742844.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: dar:Daro_3962 helix-turn-helix, fis-type YP_742845.1 PFAM: Enoyl-CoA hydratase/isomerase; formyl transferase domain protein; KEGG: dar:Daro_3963 enoyl-CoA hydratase/isomerase:formyl transferase, N-terminal:formyl transferase, C-terminal YP_742846.1 TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rme:Rmet_1540 hydrogenase expression/formation protein HypE YP_742847.1 TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: rme:Rmet_1539 hydrogenase expression/formation protein HypD YP_742848.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dar:Daro_3967 hydrogenase expression/formation protein (HUPF/HYPC) YP_742849.1 TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein; KEGG: rme:Rmet_1537 (NiFe) hydrogenase maturation protein HypF YP_742850.1 TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: rfr:Rfer_4096 hydrogenase accessory protein HypB YP_742851.1 TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis, HypA; KEGG: rfr:Rfer_4095 hydrogenase nickel insertion protein HypA YP_742852.1 KEGG: mag:amb1644 Ni,Fe-hydrogenase I large subunit YP_742853.1 KEGG: rsp:RSP_0503 HupJ, contains rubredoxin domain YP_742854.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rme:Rmet_1289 rubredoxin-type Fe(Cys)4 protein YP_742855.1 PFAM: HupH hydrogenase expression protein; KEGG: mca:MCA0161 hydrogenase expression/formation protein YP_742856.1 PFAM: hydrogenase-1 expression HyaE; KEGG: rme:Rmet_1291 hydrogenase-1 expression HyaE YP_742857.1 TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dar:Daro_3985 hydrogenase expression/formation protein (HUPF/HYPC) YP_742858.1 TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; hydrogenase maturation peptidase superfamily; PFAM: peptidase M52, hydrogen uptake protein; KEGG: rme:Rmet_1293 hydrogenase expression/formation protein YP_742859.1 TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: dar:Daro_3987 nickel-dependent hydrogenase b-type cytochrome subunit YP_742860.1 PFAM: nickel-dependent hydrogenase, large subunit; KEGG: mca:MCA0165 nickel-iron hydrogenase, large subunit YP_742861.1 KEGG: rme:Rmet_1298 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; Twin-arginine translocation pathway signal; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein YP_742862.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: plt:Plut_1539 receptor YP_742863.1 KEGG: nme:NMB1475 hypothetical protein YP_742864.1 KEGG: tdn:Tmden_0060 hypothetical protein YP_742865.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: tdn:Tmden_0062 cobalamin (vitamin B12) biosynthesis CbiM protein YP_742866.1 KEGG: ade:Adeh_0494 hypothetical protein YP_742867.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ade:Adeh_0493 ABC transporter, ATPase subunit YP_742868.1 KEGG: tbd:Tbd_1667 hypothetical protein YP_742869.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: dar:Daro_0538 methylated-DNA-(protein)-cysteine S-methyltransferase YP_742870.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: reu:Reut_B4490 acetolactate synthase, large subunit, biosynthetic type YP_742871.1 KEGG: pfo:Pfl_3982 methionine sulfoxide reductase B; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B YP_742872.1 PFAM: Silent information regulator protein Sir2; KEGG: pae:PA1125 probable cobalamin biosynthetic protein YP_742873.1 KEGG: hch:HCH_05403 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase, subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase, type 3 YP_742874.1 PFAM: EAL domain protein; KEGG: dde:Dde_1073 diguanylate phosphodiesterase (EAL domain) YP_742875.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: dar:Daro_0682 helix-turn-helix, fis-type YP_742876.1 TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: csa:Csal_2000 cytochrome d ubiquinol oxidase, subunit II YP_742877.1 PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: csa:Csal_2001 cytochrome bd ubiquinol oxidase, subunit I YP_742878.1 PFAM: protein of unknown function DUF81; KEGG: rru:Rru_A1348 protein of unknown function DUF81 YP_742879.1 PFAM: gamma-glutamyltranspeptidase; KEGG: bxe:Bxe_B1050 gamma-glutamyltransferase YP_742880.1 PFAM: histone deacetylase superfamily; KEGG: sat:SYN_00740 histone deacetylase YP_742881.1 PFAM: protein of unknown function DUF294, nucleotidyltransferase KEGG: cps:CPS_4954 CBS domain protein YP_742882.1 PFAM: Na+/solute symporter; KEGG: sde:Sde_3155 ribonuclease E and G YP_742883.1 KEGG: sde:Sde_3156 Maf-like protein YP_742884.1 PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase KEGG: psb:Psyr_4702 cyclic nucleotide-binding:CBS: nucleotidyltransferase DUF294 YP_742885.1 KEGG: mag:amb1543 DNA polymerase III; TIGRFAM: PAS sensor protein; DNA polymerase III, epsilon subunit; PFAM: histidine kinase, HAMP region domain protein; Exonuclease, RNase T and DNA polymerase III; PAS fold domain protein; SMART: PAS domain containing protein; Exonuclease YP_742886.1 PFAM: response regulator receiver; KEGG: pol:Bpro_4150 response regulator receiver domain protein (CheY-like) YP_742888.1 PFAM: CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase KEGG: mag:amb1544 predicted signal-transduction protein containing cAMP-binding and CBS domains YP_742890.1 PFAM: proline racemase; KEGG: csa:Csal_2339 proline racemase YP_742891.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mlo:mll7125 alcohol dehydrogenase YP_742893.1 PFAM: major facilitator superfamily MFS_1; KEGG: csa:Csal_2623 major facilitator superfamily MFS_1 YP_742894.1 PFAM: MscS Mechanosensitive ion channel; KEGG: csa:Csal_0950 MscS mechanosensitive ion channel YP_742895.1 PFAM: AIR synthase related protein domain protein; KEGG: tko:TK1032 hydrogenase expression/formation protein HypE YP_742896.1 KEGG: dar:Daro_0549 TRAP transporter solute receptor, TAXI family YP_742897.1 PFAM: protein of unknown function UPF0066; KEGG: pca:Pcar_2362 uncharacterized ACR YP_742898.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: tbd:Tbd_1456 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) YP_742899.1 KEGG: tbd:Tbd_2556 thiamine monophosphate synthase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_742900.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: bur:Bcep18194_A3960 rubredoxin-type Fe(Cys)4 protein YP_742901.1 PFAM: major facilitator superfamily MFS_1; KEGG: lic:LIC13210 permease of the major facilitator superfamily YP_742902.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: ilo:IL2363 ATP-dependent RNA helicase YP_742903.1 PFAM: protein of unknown function DUF479; KEGG: pae:PA4353 hypothetical protein YP_742904.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: csa:Csal_2671 TRAP transporter solute receptor, TAXI family YP_742905.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: wsu:WS0747 hypothetical protein YP_742906.1 PFAM: CBS domain containing protein; KEGG: rpc:RPC_4046 CBS domain containing membrane protein YP_742907.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: csa:Csal_1505 MotA/TolQ/ExbB proton channel YP_742908.1 PFAM: OmpA/MotB domain protein; KEGG: csa:Csal_1504 OmpA/MotB YP_742909.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: eba:ebA784 hypothetical protein YP_742910.1 PFAM: Rhomboid family protein; KEGG: sru:SRU_0684 cytoplasmic membrane protein YP_742911.1 TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: noc:Noc_0312 type II secretion system protein E YP_742912.1 PFAM: type II secretion system protein; KEGG: noc:Noc_0311 type II secretion system protein F YP_742913.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: dar:Daro_0637 peptidase A24A, prepilin type IV:peptidase A24A, N-terminal YP_742914.1 KEGG: sgl:SG0461 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase YP_742915.1 PFAM: protein of unknown function DUF1342; KEGG: mca:MCA2091 hypothetical protein YP_742916.1 TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; thiamine monophosphate synthase; KEGG: pfl:PFL_4779 mutator MutT protein YP_742917.1 KEGG: csa:Csal_2180 arginine biosynthesis bifunctional protein ArgJ; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ YP_742918.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: noc:Noc_2851 SecA protein YP_742919.1 KEGG: ppu:PP1344 hypothetical protein YP_742920.1 KEGG: pst:PSPTO0949 hypothetical protein YP_742921.1 catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate YP_742922.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+ YP_742923.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_742924.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_742925.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: jan:Jann_3692 NADH dehydrogenase (quinone) YP_742926.1 PFAM: cation antiporter; KEGG: gsu:GSU2340 Na+/H+ ion antiporter family protein YP_742927.1 PFAM: multiple resistance and pH regulation protein F; KEGG: gsu:GSU2339 monovalent cation/proton antiporter, MrpF/PhaF family YP_742928.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: gsu:GSU2338 Na+/H+ antiporter component YP_742929.1 [carboxylating]; KEGG: pst:PSPTO0948 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_742930.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence YP_742931.1 TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: bth:BT1381 formyltetrahydrofolate deformylase YP_742932.1 KEGG: cps:CPS_2608 hypothetical protein YP_742933.1 KEGG: pae:PA5025 O-acetylhomoserine (thiol)-lyase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase YP_742934.1 KEGG: mca:MCA1634 ribonucleoside-diphosphate reductase, alpha subunit; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; ATP-cone domain protein; Ribonucleotide reductase large subunit, N terminal domain protein YP_742935.1 Catalyzes the rate-limiting step in dNTP synthesis YP_742936.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: csa:Csal_0671 transcriptional regulator, LysR family YP_742937.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_742940.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase YP_742941.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ade:Adeh_3760 short-chain dehydrogenase/reductase SDR YP_742942.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth YP_742943.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: ilo:IL0993 fatty oxidation complex, alpha subunit YP_742944.1 KEGG: bba:Bd0666 hypothetical protein YP_742945.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: csa:Csal_3004 membrane protein involved in aromatic hydrocarbon degradation YP_742946.1 PFAM: phosphoadenosine phosphosulfate reductase; KEGG: yps:YPTB0761 phosphoadenosine phosphosulfate reductase YP_742947.1 KEGG: mag:amb2940 hypothetical protein YP_742948.1 PFAM: cytochrome c oxidase, subunit III; KEGG: mag:amb2941 heme/copper-type cytochrome/quinol oxidase, subunit 3 YP_742949.1 KEGG: neu:NE2003 nitric oxide reductase, cytochrome c-containing subunit YP_742950.1 PFAM: cytochrome c oxidase, subunit I; KEGG: neu:NE2004 cytochrome c oxidase, subunit I YP_742951.1 PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: noc:Noc_1848 ATPase associated with various cellular activities, AAA_5 YP_742952.1 PFAM: von Willebrand factor, type A; KEGG: noc:Noc_1847 nitric oxide reductase activation protein YP_742953.1 KEGG: ccr:CC0412 hypothetical protein YP_742954.1 KEGG: sat:SYN_02383 phosphoenolpyruvate synthase YP_742955.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer YP_742956.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA YP_742957.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_742958.1 PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: neu:NE1528 3-hydroxyacyl-CoA dehydrogenase oxidoreductase YP_742959.1 PFAM: AMP-dependent synthetase and ligase; KEGG: neu:NE1549 AMP-dependent synthetase and ligase YP_742960.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA YP_742961.1 PFAM: regulatory protein, TetR; KEGG: eba:c1A220 transcriptional regulator, TetR family YP_742962.1 PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: noc:Noc_1382 heat shock protein DnaJ-like YP_742963.1 KEGG: noc:Noc_1383 transcriptional regulator, MerR family YP_742964.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity YP_742965.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: pae:PA1544 transcriptional regulator Anr YP_742966.1 KEGG: pae:PA3911 hypothetical protein YP_742967.1 PFAM: peptidase U32; KEGG: pae:PA3912 hypothetical protein YP_742968.1 PFAM: peptidase U32; KEGG: yps:YPTB0495 protease YP_742969.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rme:Rmet_5645 alcohol dehydrogenase, zinc-binding YP_742970.1 KEGG: ade:Adeh_3030 hypothetical protein YP_742971.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_0787 ATP-binding component of glutamine high-affinity transport system YP_742972.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bur:Bcep18194_B1960 ABC polar amino acid transporter, inner membrane subunit YP_742973.1 PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: ypm:YP2327 glutamine-binding periplasmic protein YP_742974.1 PFAM: protein of unknown function DUF159; KEGG: gvi:gll2498 hypothetical protein YP_742976.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sde:Sde_0124 short chain dehydrogenase YP_742977.1 PFAM: outer membrane efflux protein; KEGG: ava:Ava_1015 outer membrane efflux protein YP_742978.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gsu:GSU0496 efflux transporter, RND family, MFP subunit YP_742979.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_0366 ATP-binding protein of ABC transporter YP_742980.1 PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_3036 protein of unknown function DUF214 YP_742982.1 PFAM: peptidase C39, bacteriocin processing; KEGG: ngo:NGO0427 hypothetical protein YP_742983.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: ppu:PP0574 DNA-binding response regulator, LuxR family YP_742984.1 KEGG: pst:PSPTO4833 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein YP_742985.1 PFAM: response regulator receiver; KEGG: bba:Bd3035 nitrogen assimilation regulatory protein NtrX YP_742986.1 PFAM: TadE family protein; KEGG: pfo:Pfl_0638 TadE-like YP_742987.1 KEGG: pae:PA4297 hypothetical protein YP_742988.1 KEGG: pae:PA4298 hypothetical protein YP_742989.1 KEGG: pae:PA4299 hypothetical protein YP_742990.1 PFAM: type II secretion system protein; KEGG: pae:PA4300 hypothetical protein YP_742991.1 PFAM: type II secretion system protein; KEGG: pfo:Pfl_0645 type II secretion system protein YP_742992.1 PFAM: type II secretion system protein E; KEGG: pae:PA4302 probable type II secretion system protein YP_742993.1 KEGG: pae:PA4303 pilus assembly protein CpaE YP_742994.1 PFAM: type II and III secretion system protein; KEGG: pfo:Pfl_0648 type II and III secretion system protein YP_742995.1 KEGG: pae:PA4305 pilus assembly protein CpaB YP_742996.1 PFAM: Flp/Fap pilin component; KEGG: psb:Psyr_4389 Flp/Fap pilin component YP_742997.1 PFAM: peptidase A24A, prepilin type IV; KEGG: mfa:Mfla_1645 peptidase A24A, prepilin type IV YP_742998.1 TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: ppu:PP0803 protein secretion ABC efflux system, membrane fusion protein YP_742999.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ppu:PP0804 protein secretion ABC efflux system, permease and ATP-binding protein YP_743000.1 PFAM: outer membrane efflux protein; KEGG: ppu:PP0805 outer membrane efflux protein YP_743001.1 KEGG: ppu:PP0806 surface adhesion protein YP_743002.1 PFAM: OmpA/MotB domain protein; KEGG: bte:BTH_II1488 outer membrane lipoprotein, OmpA/SmpA/OmlA family YP_743003.1 PFAM: EAL domain protein; response regulator receiver; KEGG: vpa:VPA0737 two-component response regulator YP_743005.1 KEGG: noc:Noc_0984 hypothetical protein YP_743006.1 PFAM: protein of unknown function UPF0029; KEGG: hch:HCH_06880 hypothetical protein YP_743007.1 PFAM: protein of unknown function DUF900, hydrolase; KEGG: vfi:VFA0139 hypothetical protein YP_743008.1 KEGG: pai:PAE3316 oligopeptide transport ATP-binding protein, TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase YP_743009.1 KEGG: pai:PAE3317 oligopeptide transport ATP-binding protein, TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase YP_743010.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tko:TK1802 ABC-type dipeptide/oligopeptide transport system, permease component YP_743011.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pai:PAE3087 oligopeptide ABC transporter, permease YP_743012.1 KEGG: pai:PAE3088 oligopeptide binding protein YP_743013.1 KEGG: son:SO1968 hypothetical protein YP_743014.1 KEGG: cbu:CBU_0714 hypothetical protein YP_743015.1 PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_2675 initiation factor 2 YP_743016.1 PFAM: beta-lactamase domain protein; KEGG: eba:ebA2717 metallo-beta-lactamase YP_743017.1 KEGG: gme:Gmet_2580 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_743018.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis YP_743019.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: hch:HCH_05877 cell division protein FtsZ YP_743020.1 PFAM: cell division protein FtsA; KEGG: mca:MCA2424 cell division protein FtsA YP_743021.1 PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: psp:PSPPH_4105 cell division protein FtsQ YP_743022.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_743023.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_743024.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_743025.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_743026.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: noc:Noc_2862 cell cycle protein, FtsW YP_743027.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_743028.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_743029.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: noc:Noc_2865 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D -alanyl ligase YP_743030.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_743031.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: noc:Noc_2867 peptidoglycan glycosyltransferase YP_743032.1 PFAM: cell division protein FtsL; KEGG: xcb:XC_3516 cell division protein YP_743033.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: eba:ebA1452 S-adenosyl-methyltransferase MraW YP_743034.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_743035.1 TIGRFAM: Protein of unknown function UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ecc:c3899 hypothetical protein YraL YP_743036.1 PFAM: LppC family lipoprotein; Tetratricopeptide TPR_2 repeat protein; KEGG: noc:Noc_0356 LppC lipoprotein YP_743037.1 PFAM: protein of unknown function UPF0102; KEGG: bbr:BB4515 predicted endonuclease YP_743038.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate YP_743039.1 PFAM: Stringent starvation protein B; KEGG: hch:HCH_10003 stringent starvation protein B YP_743040.1 PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: mca:MCA1959 stringent starvation protein A YP_743041.1 PFAM: cytochrome c1; KEGG: nmu:Nmul_A1003 cytochrome c1 YP_743042.1 PFAM: Cytochrome b/b6, N-terminal domain; Cytochrome b/b6, C-terminal domain; KEGG: pae:PA4430 ubiquinol-cytochrome c reductase cytochrome b subunit YP_743043.1 KEGG: noc:Noc_0299 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein YP_743044.1 PFAM: protein of unknown function DUF34; KEGG: hch:HCH_05302 hypothetical protein YP_743045.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: csa:Csal_2211 peptidase S1 and S6, chymotrypsin/Hap YP_743046.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_743047.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_743048.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_743049.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_743050.1 PFAM: BolA family protein; KEGG: dar:Daro_3394 BolA-like protein YP_743051.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: noc:Noc_2783 sulfate transporter/antisigma-factor antagonist STAS YP_743052.1 PFAM: toluene tolerance family protein; KEGG: mfa:Mfla_0240 toluene tolerance YP_743053.1 PFAM: Mammalian cell entry related domain protein; KEGG: noc:Noc_2784 ABC-type transport system involved in resistance to organic solvents periplasmic component YP_743054.1 PFAM: protein of unknown function DUF140; KEGG: mca:MCA1968 ABC transport system permease YP_743055.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA1969 ABC transporter, ATP-binding protein YP_743056.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: csa:Csal_2006 K+-dependent Na+/Ca+ exchanger related-protein YP_743057.1 KEGG: noc:Noc_2788 sugar phosphate isomerase involved in capsule formation, KpsF/GutQ; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS) YP_743058.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: bbr:BB4502 probable hydrolase YP_743059.1 PFAM: protein of unknown function DUF1239; KEGG: noc:Noc_2790 protein of unknown function DUF1239 YP_743060.1 PFAM: OstA family protein; KEGG: tbd:Tbd_0535 OstA-like family protein YP_743061.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppu:PP0953 ABC transporter, ATP-binding protein YP_743062.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: pae:PA4462 RNA polymerase sigma-54 factor YP_743063.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: tcx:Tcr_0972 sigma 54 modulation protein/ribosomal protein S30EA YP_743064.1 PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: noc:Noc_2795 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 YP_743065.1 PFAM: Uncharacterised P-loop ATPase UPF0042; KEGG: noc:Noc_2797 uncharacterized P-loop ATPase UPF0042 YP_743066.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: sde:Sde_3182 HNH nuclease YP_743067.1 KEGG: hch:HCH_01809 hypothetical protein YP_743068.1 KEGG: tbd:Tbd_2662 phosphoribosylaminoimidazole carboxylase, ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp YP_743069.1 KEGG: eba:ebA116 phosphoribosylaminoimidazole carboxylase catalytic subunit (AIR carboxylase) (AIRC), gene: PurE or BSU06420; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase YP_743070.1 PFAM: protein of unknown function DUF1078 domain protein; KEGG: sdn:Sden_1776 conserved hypothetical methyl-accepting chemotaxis protein YP_743071.1 TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: mag:amb3725 poly(3-hydroxyalkanoate) synthetase YP_743072.1 PFAM: protein of unknown function DUF548; KEGG: cvi:CV0463 hypothetical protein YP_743073.1 PFAM: ribosomal protein S9; KEGG: ilo:IL0415 ribosomal protein S9 YP_743074.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_743075.1 KEGG: bpm:BURPS1710b_0617 ferredoxin, 2Fe-2S YP_743076.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine YP_743077.1 PFAM: OsmC family protein; KEGG: nmu:Nmul_A0342 OsmC-like protein YP_743078.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons YP_743079.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: mca:MCA2587 indole-3-glycerol phosphate synthase YP_743080.1 TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase, family 3; KEGG: noc:Noc_2496 anthranilate phosphoribosyl transferase YP_743081.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: pae:PA0649 anthranilate synthase component II YP_743082.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_743083.1 TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: csa:Csal_2324 phosphoglycolate phosphatase YP_743084.1 PFAM: heat shock protein DnaJ domain protein; KEGG: pfl:PFL_5643 DnaJ-like protein DjlA YP_743085.1 PFAM: amine oxidase; KEGG: bur:Bcep18194_C6583 FAD dependent oxidoreductase YP_743086.1 PFAM: RNA methylase; Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mlo:mll0368 cyclopropane-fatty-acyl-phospholipid synthase YP_743087.1 PFAM: regulatory protein, MerR; KEGG: csa:Csal_0466 transcriptional regulator, MerR family YP_743088.1 PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: rru:Rru_A2903 deoxyribodipyrimidine photolyase YP_743089.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_743091.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bbr:BB4132 enzyme YP_743092.1 KEGG: bte:BTH_I1196 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_743093.1 KEGG: noc:Noc_2808 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region YP_743094.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_743095.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine YP_743096.1 KEGG: nmu:Nmul_A2539 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase YP_743097.1 PFAM: protein of unknown function DUF785; KEGG: cbu:CBU_1601 hypothetical protein YP_743098.1 TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: hch:HCH_00778 glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase) YP_743100.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A) YP_743101.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: mag:amb4386 ABC-type uncharacterized transport system, duplicated ATPase component YP_743102.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA1808 peptide transport system permease YP_743103.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nwi:Nwi_0290 binding-protein-dependent transport systems inner membrane component YP_743104.1 PFAM: protein of unknown function UPF0150; KEGG: rpb:RPB_4320 protein of unknown function UPF0150 YP_743105.1 PFAM: YcfA family protein; KEGG: mac:MA2135 hypothetical protein YP_743106.1 PFAM: extracellular solute-binding protein, family 5; KEGG: mag:amb4389 ABC-type oligopeptide transport system, periplasmic component YP_743107.1 KEGG: tcx:Tcr_1885 hypothetical protein YP_743108.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: wsu:WS1425 outer membrane receptor for iron-regulated colicin I receptor, porin, requires TonB gene product colicin I receptor YP_743109.1 [NADH]; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA1263 enoyl-(acyl-carrier-protein) reductase YP_743110.1 KEGG: ftl:FTL_0105 hypothetical membrane protein YP_743111.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: bha:BH1831 L-lactate permease YP_743112.1 PFAM: protein of unknown function DUF162; KEGG: dar:Daro_0673 protein of unknown function DUF162 YP_743113.1 TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: eba:ebA3917 iron-sulfur binding protein YP_743114.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: eba:ebA3918 predicted Fe-S oxidoreductase YP_743115.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: csa:Csal_0403 GntR-like protein YP_743116.1 KEGG: cbu:CBU_1451 peptidyl-prolyl cis-trans isomerse D - related protein YP_743117.1 PFAM: histone family protein DNA-binding protein; KEGG: hch:HCH_02163 bacterial nucleoid DNA-binding protein YP_743118.1 KEGG: mca:MCA0531 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase YP_743119.1 binds and unfolds substrates as part of the ClpXP protease YP_743120.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_743121.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_743122.1 PFAM: protein of unknown function DUF218; KEGG: eca:ECA2551 hypothetical protein YP_743123.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: nha:Nham_0101 excinuclease ABC, C subunit-like YP_743124.1 KEGG: tfu:Tfu_1919 conserved hypothetical protein YP_743125.1 KEGG: sat:SYN_01816 hypothetical cytosolic protein YP_743126.1 KEGG: pca:Pcar_1809 hypothetical protein YP_743127.1 KEGG: sat:SYN_01818 hypothetical cytosolic protein YP_743128.1 KEGG: sat:SYN_01819 hypothetical cytosolic protein YP_743130.1 PFAM: AAA-4 family protein; KEGG: cch:Cag_1221 transcriptional regulator YP_743131.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: fra:Francci3_4507 cobyrinic acid a,c-diamide synthase YP_743132.1 PFAM: helix-turn-helix domain protein; KEGG: rru:Rru_A2442 transcriptional regulator, XRE family YP_743133.1 PFAM: HipA domain protein; KEGG: rru:Rru_A2443 HipA protein YP_743136.1 KEGG: chy:CHY_1722 PIN domain protein YP_743137.1 KEGG: sat:SYN_00015 transcriptional regulator with HTH domain YP_743139.1 KEGG: rru:Rru_A1247 transcriptional regulator, XRE family YP_743140.1 KEGG: noc:Noc_2931 hypothetical protein YP_743141.1 KEGG: plt:Plut_0831 hypothetical protein YP_743142.1 KEGG: plt:Plut_0830 hypothetical protein YP_743143.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: sde:Sde_2114 chorismate mutase, gamma, beta and epsilon YP_743144.1 KEGG: dps:DPPB61 hypothetical protein YP_743145.1 KEGG: mhu:Mhun_1079 hypothetical protein YP_743146.1 PFAM: regulatory protein, MarR; KEGG: lic:LIC12206 transcriptional regulator (MarR family) YP_743147.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pfo:Pfl_4058 dTDP-glucose 4,6-dehydratase YP_743148.1 PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_4021 dTDP-4-dehydrorhamnose reductase YP_743149.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pol:Bpro_4018 glucose-1-phosphate thymidylyltransferase YP_743150.1 KEGG: eba:ebA2275 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related YP_743151.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ilo:IL0540 ABC-type multidrug transport system, ATPase and permease components YP_743152.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: par:Psyc_0653 polysaccharide biosynthesis protein CapD YP_743153.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: par:Psyc_0654 DegT/DnrJ/EryC1/StrS aminotransferase YP_743154.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; acylneuraminate cytidylyltransferase; KEGG: par:Psyc_0656 acylneuraminate cytidylyltransferase YP_743155.1 KEGG: par:Psyc_0657 probable polysaccharide biosynthesis protein YP_743156.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_1284 MaoC-like dehydratase YP_743157.1 PFAM: N-acetylneuraminic acid synthase, N-terminal domain; KEGG: cps:CPS_2097 NeuB protein YP_743158.1 PFAM: sulfotransferase; KEGG: sru:SRU_1002 sulfotransferase domain superfamily YP_743159.1 PFAM: Integrase, catalytic region; KEGG: dsy:DSY4578 hypothetical protein YP_743160.1 KEGG: sdn:Sden_2169 hypothetical protein YP_743161.1 KEGG: neu:NE1571 hypothetical protein YP_743162.1 PFAM: glycosyl transferase, group 1; KEGG: csa:Csal_1715 glycosyl transferase, group 1 YP_743163.1 KEGG: sdn:Sden_2169 hypothetical protein YP_743164.1 PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22) YP_743166.1 KEGG: sdn:Sden_2169 hypothetical protein YP_743167.1 PFAM: Integrase, catalytic region; KEGG: dsy:DSY4578 hypothetical protein YP_743168.1 PFAM: glycosyl transferase, group 1; KEGG: par:Psyc_0667 probable glycosyl transferase, group 1 YP_743169.1 KEGG: reu:Reut_B5373 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase YP_743170.1 KEGG: tel:tll1203 unknown protein YP_743171.1 PFAM: glycosyl transferase, group 1; KEGG: csa:Csal_1721 glycosyl transferase, group 1 YP_743172.1 PFAM: glycosyl transferase, family 4; KEGG: bbr:BB0875 probable glycosyltransferase YP_743173.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: csa:Csal_1672 3'(2'),5'-bisphosphate nucleotidase YP_743174.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP YP_743175.1 KEGG: csa:Csal_1687 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; adenylylsulfate kinase; elongation factor Tu, domain 2 protein YP_743176.1 KEGG: mhu:Mhun_0414 ATPase (AAA+ superfamily)-like YP_743177.1 PFAM: Citrate transporter; TrkA-C domain protein; KEGG: noc:Noc_1175 TrkA-C, di- and tricarboxylate transporters YP_743178.1 KEGG: hch:HCH_02378 hypothetical protein YP_743179.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: ppr:PBPRA1875 hypothetical D-alanyl-D-alanine endopeptidase YP_743180.1 PFAM: glycosyl transferase, group 1; KEGG: eba:ebA4292 conserved hypothetical protein, possibly glycosyltransferase YP_743181.1 KEGG: xcb:XC_3634 glycosyltransferase YP_743182.1 PFAM: glycosyl transferase, family 2; KEGG: ret:RHE_CH03223 glycosyltransferase YP_743183.1 PFAM: glycosyl transferase, family 2; KEGG: bha:BH3661 teichuronic acid biosynthesis YP_743184.1 PFAM: glycosyl transferase, family 2; KEGG: nha:Nham_3045 glycosyl transferase, family 2 YP_743185.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sru:SRU_0598 ABC transporter, multidrug efflux family YP_743187.1 PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mta:Moth_0582 oxygen-independent coproporphyrinogen III oxidase YP_743188.1 KEGG: ret:RHE_PE00036 glycosyltransferase YP_743189.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: rpa:RPA0983 possible phthalate dioxygenase YP_743190.1 KEGG: pmt:PMT0107 hypothetical protein YP_743191.1 PFAM: isochorismatase hydrolase; aldehyde dehydrogenase; KEGG: bbr:BB0641 aldehyde dehydrogenase YP_743192.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: gvi:gll3551 3-isopropylmalate dehydrogenase YP_743194.1 KEGG: bur:Bcep18194_B1165 hypothetical protein YP_743195.1 PFAM: glycosyl transferase, group 1; KEGG: atc:AGR_L_2541 hypothetical protein YP_743196.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: pmt:PMT0102 surface polysaccharide biosynthesis protein, possible cytidylyltransferase YP_743198.1 KEGG: dvu:DVU0351 cytidine 5'monophosphate N-acetylneuraminic acid synthetase, /polysaccharide biosynthesis protein YP_743199.1 PFAM: N-acetylneuraminic acid synthase, N-terminal domain; KEGG: hch:HCH_05266 sialic acid synthase YP_743200.1 KEGG: cya:CYA_1816 tetratricopeptide repeat protein YP_743203.1 TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: csa:Csal_1672 3'(2'),5'-bisphosphate nucleotidase YP_743204.1 PFAM: GAF domain protein; KEGG: gme:Gmet_2614 GAF sensor protein YP_743207.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: bur:Bcep18194_B2633 acetate kinase YP_743208.1 PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: rpa:RPA4567 phosphate acetyltransferase YP_743209.1 [NADH]; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpa:RPA4568 enoyl-acyl carrier protein reductase YP_743210.1 PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: sil:SPO0112 poly(3-hydroxyalkanoate) polymerase YP_743211.1 PFAM: MscS Mechanosensitive ion channel; KEGG: sru:SRU_0808 transporter, small conductance mechanosensitive ion channel (MscS) family YP_743212.1 KEGG: sru:SRU_0809 hypothetical protein YP_743213.1 PFAM: type II secretion system protein N; KEGG: son:SO0176 general secretion pathway protein N YP_743214.1 PFAM: General secretion pathway M protein; KEGG: hch:HCH_03928 type II secretory pathway, component PulM YP_743215.1 TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: ilo:IL2018 type II secretory pathway, component PulL YP_743216.1 PFAM: General secretion pathway protein K; KEGG: xcb:XC_0746 type II secretion system protein K YP_743217.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: son:SO0867 serine protease, subtilase YP_743218.1 TIGRFAM: general secretion pathway protein J; KEGG: pae:PA3098 general secretion pathway protein J YP_743219.1 TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: cvi:CV3809 general secretion pathway protein I YP_743220.1 TIGRFAM: general secretion pathway protein H; Prepilin-type cleavage/methylation-like; KEGG: sdn:Sden_0125 general secretion pathway protein H YP_743221.1 TIGRFAM: general secretion pathway protein G; PFAM: II secretion system protein G; KEGG: cvi:CV3811 general secretion pathway protein G YP_743222.1 TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: son:SO0168 general secretion pathway protein F YP_743223.1 PFAM: Abortive infection protein; KEGG: pcu:pc0718 hypothetical protein YP_743224.1 PFAM: von Willebrand factor, type A; KEGG: mma:MM2478 chloride channel YP_743226.1 KEGG: noc:Noc_0277 possible streptogramin lyase, gluconolactonase YP_743227.1 PFAM: WD40 domain protein beta Propeller; KEGG: gsu:GSU0025 tolB protein YP_743229.1 KEGG: pae:PA3103 general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase YP_743231.1 TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: sde:Sde_3580 helix-turn-helix, AraC type YP_743232.1 TIGRFAM: general secretion pathway protein C; KEGG: son:SO0165 general secretion pathway protein C YP_743233.1 KEGG: ppu:PP0622 competence lipoprotein ComL YP_743234.1 PFAM: alpha/beta hydrolase fold; KEGG: rme:Rmet_0084 alpha/beta hydrolase fold YP_743235.1 PFAM: regulatory protein, LuxR; KEGG: ppr:PBPRB1591 hypothetical protein YP_743237.1 PFAM: protein of unknown function DUF214; KEGG: bbr:BB3420 inner membrane transport permease YP_743238.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfo:Pfl_4015 ABC transporter-like YP_743239.1 PFAM: lipolytic enzyme, G-D-S-L family; KEGG: noc:Noc_0429 arylesterase YP_743240.2 Required for efficient pilin antigenic variation YP_743241.1 PFAM: TspO/MBR family protein; KEGG: ret:RHE_PE00375 tryptophan rich sensory protein YP_743242.1 TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: csa:Csal_1834 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region YP_743243.1 KEGG: eba:ebA4859 predicted integral membrane protein YP_743244.1 PFAM: cyclic nucleotide-binding; KEGG: hch:HCH_05853 predicted signal transduction protein YP_743245.1 PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: noc:Noc_1086 peptidylprolyl isomerase, FKBP-type YP_743246.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pae:PA3347 hypothetical protein YP_743247.1 PFAM: protein of unknown function DUF1458; KEGG: csa:Csal_2871 protein of unknown function DUF1458 YP_743248.1 PFAM: isochorismatase hydrolase; KEGG: pae:PA3846 hypothetical protein YP_743249.1 PFAM: outer membrane lipoprotein Slp; KEGG: vvy:VV1051 starvation-inducible outer membrane lipoprotein YP_743250.1 PFAM: outer membrane lipoprotein Slp; KEGG: noc:Noc_1325 outer membrane lipoprotein Slp YP_743251.1 PFAM: carbonic anhydrase; KEGG: xac:XAC1604 carbonic anhydrase YP_743252.1 KEGG: plt:Plut_1005 ATPase, ParA family YP_743253.1 PFAM: CHAD domain containing protein; KEGG: csa:Csal_2889 hypothetical protein YP_743254.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppu:PP0196 ABC transporter, ATP-binding protein YP_743255.1 TIGRFAM: formate dehydrogenase, gamma subunit; PFAM: cytochrome B561; KEGG: csa:Csal_1917 formate dehydrogenase, gamma subunit YP_743256.1 TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dsy:DSY4131 anaerobic dehydrogenase YP_743257.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sth:STH2083 molybdopterin oxidoreductase iron-sulfur binding subunit YP_743259.1 KEGG: mca:MCA2070 sensory box protein; TIGRFAM: metal dependent phophohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; HDIG domain protein; SMART: metal-dependent phosphohydrolase, HD region YP_743260.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: dar:Daro_1009 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal YP_743261.1 KEGG: csa:Csal_2967 hypothetical protein YP_743262.1 KEGG: nme:NMB0979 hypothetical protein YP_743263.1 TIGRFAM: biotin biosynthesis protein BioC; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: tbd:Tbd_0322 biotin biosynthesis protein BioC YP_743264.1 PFAM: alpha/beta hydrolase fold; KEGG: xcb:XC_0397 biotin biosynthesis protein YP_743265.1 KEGG: mca:MCA1126 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase, class I and II YP_743266.1 KEGG: xcv:XCV0403 biotin synthase BioB; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB YP_743267.1 KEGG: mca:MCA1124 competence protein F YP_743268.1 catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway YP_743269.1 PFAM: Chorismate lyase; KEGG: eba:ebA2295 chorismate:pyruvate lyase, 4-hydroxybenzoate synthetase YP_743270.1 catalyzes branch migration in Holliday junction intermediates YP_743271.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: mca:MCA2024 endoribonuclease L-PSP YP_743272.1 KEGG: pae:PA5338 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region YP_743273.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_743274.1 KEGG: ppu:PP5296 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region YP_743275.1 TIGRFAM: conserved hypothetical protein; PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: sfx:S4085 alpha helix protein YP_743276.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_743277.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: sde:Sde_3647 ribosomal protein L33 YP_743278.1 KEGG: xcb:XC_0963 oxidoreductase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_743279.1 KEGG: pfl:PFL_5128 hypothetical protein YP_743281.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pae:PA0575 hypothetical protein YP_743282.1 KEGG: dar:Daro_1338 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase-like protein YP_743283.1 PFAM: Amidase; KEGG: bbr:BB4925 amidase YP_743284.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: dar:Daro_1358 Rieske (2Fe-2S) region YP_743285.1 KEGG: bpe:BP1562 hypothetical protein YP_743286.1 PFAM: alpha/beta hydrolase fold; KEGG: dar:Daro_3786 alpha/beta hydrolase fold YP_743287.1 PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; KEGG: ilo:IL0248 hypothetical protein YP_743288.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:bll5282 biphenyl-2,3-diol 1,2-dioxygenase YP_743289.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: dar:Daro_1359 oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region YP_743290.1 PFAM: Hydratase/decarboxylase; KEGG: bur:Bcep18194_B2961 4-oxalocrotonate decarboxylase YP_743291.1 catalyzes the formation of acetyl-CoA from acetalaldehyde YP_743292.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate YP_743293.1 PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: tcx:Tcr_2059 (acyl-carrier protein) phosphodiesterase YP_743294.1 TIGRFAM: Glutaredoxin-family domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; glutaredoxin; Redoxin domain protein; KEGG: ava:Ava_4981 glutaredoxin-like region YP_743295.1 KEGG: dar:Daro_1352 hypothetical protein YP_743296.1 KEGG: dar:Daro_1351 probable regulatory protein, LysR YP_743297.1 KEGG: dar:Daro_1350 exporters of the RND superfamily YP_743298.1 PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: dar:Daro_1349 glycosyl hydrolase, BNR repeat YP_743299.1 PFAM: regulatory protein, MarR; helix-turn-helix, HxlR type; KEGG: dar:Daro_1332 hypothetical protein YP_743300.1 PFAM: regulatory protein, MarR; KEGG: dar:Daro_1332 hypothetical protein YP_743301.1 PFAM: carboxyl transferase; malonate decarboxylase gamma subunit; KEGG: rfr:Rfer_1845 acetyl-CoA carboxylase beta subunit YP_743302.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mag:amb4555 NADPH:quinone reductase and related Zn-dependent oxidoreductase YP_743303.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: dar:Daro_1735 UTP--glucose-1-phosphate uridylyltransferase, bacterial and archaeal type YP_743304.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_743305.1 KEGG: dar:Daro_0847 NlpBDapX lipoprotein YP_743306.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_743308.1 PFAM: protein of unknown function DUF583; KEGG: csa:Csal_2787 protein of unknown function DUF583 YP_743309.1 PFAM: amino acid-binding ACT domain protein; KEGG: hch:HCH_04907 glycine cleavage system regulatory protein YP_743310.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bxe:Bxe_A2391 bacterioferritin comigratory oxidoreductase YP_743311.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: noc:Noc_1210 PhoH-like protein YP_743312.1 PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_0190 protein of unknown function UPF0118 YP_743313.1 PFAM: peptidase M48, Ste24p; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; KEGG: noc:Noc_2619 peptidase M48, Ste24p YP_743314.1 KEGG: xcb:XC_1958 PHA synthase subunit YP_743315.1 PFAM: alpha/beta hydrolase fold; KEGG: xcv:XCV2209 poly-beta-hydroxybutyrate polymerase YP_743316.1 TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Acetoacetyl-CoA reductase; KEGG: hch:HCH_04996 acetoacetyl-CoA reductase YP_743317.1 TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: xac:XAC2402 hypothetical protein YP_743318.1 KEGG: dar:Daro_1978 HDIG YP_743319.1 KEGG: noc:Noc_0255 para-aminobenzoate synthase, component I; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein YP_743320.1 PFAM: AMP-dependent synthetase and ligase; KEGG: jan:Jann_1256 AMP-dependent synthetase and ligase YP_743321.1 PFAM: Patatin; KEGG: bja:bll7964 hypothetical protein YP_743322.1 PFAM: protein of unknown function DUF28; KEGG: neu:NE0210 hypothetical protein YP_743323.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity YP_743324.1 KEGG: pae:PA0966 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein, RuvA; RuvA domain protein; SMART: Helix-hairpin-helix DNA-binding, class 1 YP_743325.1 KEGG: hch:HCH_02750 hypothetical protein YP_743326.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_743327.1 PFAM: heat shock protein DnaJ domain protein; KEGG: pae:PA1191 hypothetical protein YP_743328.1 PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: tbd:Tbd_2180 long-chain fatty acid transport protein YP_743329.1 KEGG: tbd:Tbd_0575 hypothetical protein YP_743330.1 PFAM: SirA family protein; KEGG: mag:amb0858 predicted redox protein YP_743331.1 KEGG: pol:Bpro_5280 hypothetical protein YP_743332.1 KEGG: hma:rrnAC1162 hypothetical protein YP_743333.1 KEGG: hma:rrnAC1161 hypothetical protein YP_743334.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: rfr:Rfer_3684 periplasmic sensor signal transduction histidine kinase YP_743335.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xoo:XOO0423 two-component system regulatory protein YP_743336.1 KEGG: pol:Bpro_1955 propeptide, PepSY amd peptidase M4 YP_743337.1 PFAM: 17 kDa surface antigen; KEGG: hch:HCH_06412 predicted outer membrane lipoprotein YP_743338.1 KEGG: neu:NE1189 hypothetical protein YP_743339.1 KEGG: pol:Bpro_4057 hypothetical protein YP_743340.1 PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: noc:Noc_0872 alpha/beta hydrolase fold YP_743341.1 KEGG: pst:PSPTO1346 sensory box/GGDEF domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_743342.1 PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: mca:MCA2577 dehydrogenase subunit YP_743343.1 TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: reu:Reut_B4651 formate dehydrogenase, alpha subunit YP_743344.1 KEGG: bbr:BB4050 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_743345.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll3759 similar to ABC transporter (binding protein) YP_743346.1 TIGRFAM: RNA polymerase sigma factor RpoD; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: ppu:PP0387 RNA polymerase sigma factor RpoD YP_743347.1 KEGG: ppr:PBPRA0431 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase DnaG, DnaB-binding; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein YP_743348.1 PFAM: GatB/Yqey domain protein; KEGG: sde:Sde_0718 hypothetical protein YP_743349.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_743350.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_743351.1 PFAM: protein of unknown function DUF205; KEGG: lpn:lpg2356 transmembrane protein YP_743352.1 TIGRFAM: dihydroneopterin aldolase; KEGG: pae:PA0582 dihydroneopterin aldolase YP_743353.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: noc:Noc_0038 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HppK YP_743354.1 PFAM: protein of unknown function DUF185; KEGG: dar:Daro_4140 protein of unknown function DUF185 YP_743355.1 KEGG: mca:MCA2737 hypothetical protein YP_743356.1 PFAM: Endonuclease V; KEGG: mca:MCA0045 endonuclease V YP_743357.1 KEGG: eba:ebB186 hypothetical protein YP_743358.1 PFAM: TrkA-N domain protein; KEGG: mfa:Mfla_2071 TrkA-N YP_743359.1 PFAM: OmpA/MotB domain protein; KEGG: mfa:Mfla_1578 OmpA/MotB YP_743360.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mfa:Mfla_0031 oxidoreductase FAD/NAD(P)-binding YP_743361.1 TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: pfl:PFL_5980 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_743362.1 KEGG: ssn:SSO_0271 hypothetical protein YP_743363.1 PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: noc:Noc_0208 oligopeptidase A YP_743364.1 TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: yps:YPTB3818 glutathione reductase YP_743365.1 KEGG: pol:Bpro_1826 hypothetical protein YP_743366.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pae:PA1159 probable cold-shock protein YP_743367.1 PFAM: protein of unknown function DUF55; KEGG: mca:MCA0353 hypothetical protein YP_743368.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: pfl:PFL_5971 5-formyltetrahydrofolate cyclo-ligase YP_743369.1 PFAM: protein of unknown function DUF710; KEGG: nmu:Nmul_A0626 protein of unknown function DUF710 YP_743370.1 TIGRFAM: conserved hypothetical protein; KEGG: xcb:XC_0903 hypothetical protein YP_743371.1 TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: sdn:Sden_0830 YgfB and YecA YP_743372.1 PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: noc:Noc_2579 peptidase M24 YP_743373.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase, FAD-binding; KEGG: noc:Noc_2580 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 YP_743374.1 TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: noc:Noc_2581 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 YP_743375.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: noc:Noc_0722 signal transduction histidine kinase YP_743376.1 KEGG: rme:Rmet_3092 hypothetical protein YP_743377.1 catalyzes the interconversion of succinyl-CoA and succinate YP_743378.1 TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: csa:Csal_1221 succinyl-CoA synthetase, alpha subunit YP_743379.1 KEGG: mca:MCA0969 NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase; ExsB family protein YP_743380.1 PFAM: nitrogen regulatory protein P-II; KEGG: pmu:PM2004 nitrogen regulatory protein P-II YP_743381.1 KEGG: son:SO3580 lipoprotein YP_743382.1 KEGG: csa:Csal_0497 pseudouridine synthase, RluD; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase YP_743383.1 PFAM: ATP dependent DNA ligase; KEGG: noc:Noc_1413 ATP-dependent DNA ligase YP_743384.1 PFAM: aminotransferase, class I and II; KEGG: csa:Csal_1034 aminotransferase, class I and II YP_743385.1 TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dar:Daro_4161 HAD-superfamily subfamily IIA hydrolase, hypothetical 2:HAD-superfamily hydrolase, subfamily IIA YP_743386.1 KEGG: noc:Noc_1414 hypothetical protein YP_743387.1 PFAM: protein of unknown function DUF152; KEGG: cvi:CV2191 conserved hypothetical protein YP_743388.1 PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: noc:Noc_2381 ATP-dependent Clp protease YP_743389.1 KEGG: xcb:XC_3180 type I site-specific restriction-modification system, R (restriction) subunit and related helicases YP_743391.1 PFAM: helix-turn-helix domain protein; KEGG: noc:Noc_0167 transcriptional regulator, XRE family YP_743392.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: vvu:VV12432 antitoxin of toxin-antitoxin stability system YP_743393.1 PFAM: plasmid stabilization system; KEGG: vvu:VV12433 plasmid stabilization system protein YP_743394.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: atc:AGR_C_4804 glycerol-3-phosphate dehydrogenase YP_743395.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; Shikimate/quinate 5-dehydrogenase; KEGG: mca:MCA2048 oxidoreductase, Gfo/Idh/MocA family YP_743396.1 TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: tbd:Tbd_1845 protease YP_743397.1 PFAM: protein of unknown function DUF610, YibQ; KEGG: pha:PSHAa0363 hypothetical protein YP_743398.1 KEGG: noc:Noc_0030 peptidase S41A; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41 YP_743399.1 PFAM: peptidase M23B; KEGG: ilo:IL0232 membrane-associated metallopeptidase, NlpD family YP_743400.1 PFAM: Rhodanese domain protein; KEGG: ppr:PBPRA0225 hypothetical protein YP_743401.1 molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA YP_743402.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_743403.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: noc:Noc_2823 RNA methyltransferase TrmH, group 2 YP_743404.1 PFAM: extracellular solute-binding protein, family 1; KEGG: tbd:Tbd_0990 ABC transporter, iron binding protein YP_743405.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA5216 iron transport system permease YP_743406.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_743407.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_743408.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_743409.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ade:Adeh_0828 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_743410.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_743411.1 KEGG: dps:DP0063 hypothetical protein YP_743412.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat YP_743413.1 KEGG: pca:Pcar_2788 hypothetical protein YP_743414.1 KEGG: noc:Noc_1583 hypothetical protein YP_743415.1 KEGG: nar:Saro_0851 hypothetical protein YP_743416.1 catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide YP_743417.1 KEGG: mfa:Mfla_2170 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase YP_743418.1 TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_3741 nitrate transport permease YP_743419.1 TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpa:RPA2112 nitrate transporter component, nrtA YP_743420.1 PFAM: ANTAR domain protein; KEGG: csa:Csal_1132 response regulator receiver (CheY-like) and ANTAR domain protein YP_743421.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_743423.1 PFAM: cobalamin synthesis protein, P47K; KEGG: ypm:YP1312 cobalamin synthesis protein YP_743424.1 PFAM: phosphopantetheine-binding; KEGG: bte:BTH_II0931 hypothetical protein YP_743425.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: rfr:Rfer_0385 catalytic domain of components of various dehydrogenase complexes YP_743426.1 PFAM: dehydrogenase, E1 component; Transketolase, central region; Transketolase domain protein; KEGG: jan:Jann_3081 dehydrogenase, E1 component YP_743427.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_743428.1 PFAM: Abortive infection protein; KEGG: noc:Noc_1193 abortive infection protein YP_743429.1 PFAM: nitroreductase; KEGG: pab:PAB0163 NADH oxidase YP_743430.1 KEGG: csa:Csal_2464 hypothetical protein YP_743431.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C YP_743432.1 TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: rme:Rmet_1584 PrpF, AcnD-accessory YP_743433.1 Catalyzes the conversion of citrate to isocitrate YP_743434.1 KEGG: csa:Csal_2420 2-methylcitrate synthase/citrate synthase II; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase YP_743435.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate YP_743436.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: noc:Noc_2046 zinc-containing alcohol dehydrogenase superfamily YP_743437.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: hch:HCH_04743 dihydrolipoamide dehydrogenase YP_743438.1 TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: pae:PA1586 dihydrolipoamide succinyltransferase (E2 subunit) YP_743439.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_743440.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: csa:Csal_0591 sec-independent protein translocase TatC YP_743441.1 TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: vfi:VF0050 sec-independent protein translocase TatB YP_743442.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: hch:HCH_01076 sec-independent protein secretion pathway components YP_743443.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_743444.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis; KEGG: noc:Noc_3054 imidazole glycerol phosphate synthase subunit HisF YP_743445.1 TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis; KEGG: sde:Sde_0489 response regulator receiver domain protein (CheY-like) YP_743446.1 TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: ppu:PP0290 glutamine amidotransferase HisH YP_743447.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: pfo:Pfl_0323 imidazoleglycerol-phosphate dehydratase YP_743448.1 PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: mca:MCA1743 D-tyrosyl-tRNA deacylase YP_743450.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: tcx:Tcr_0183 lipid A biosynthesis acyltransferase YP_743451.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: tbd:Tbd_0023 hypothetical protein with TPR repeat YP_743452.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain YP_743453.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; KEGG: mca:MCA2848 nitrogen regulation protein NtrX YP_743454.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: noc:Noc_3018 signal transduction histidine kinase, NtrY YP_743455.1 KEGG: mca:MCA2846 hypothetical protein YP_743456.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: pae:PA0017 Sun protein YP_743457.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: mca:MCA2844 methionyl-tRNA formyltransferase YP_743458.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_743459.1 PFAM: Peptidoglycan-binding LysM; KEGG: hch:HCH_00031 uncharacterized protein containing LysM domain YP_743460.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: noc:Noc_3012 smf protein YP_743461.1 PFAM: protein of unknown function DUF494; KEGG: xoo:XOO0582 Smg YP_743462.1 decatenates replicating daughter chromosomes YP_743463.1 PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: csa:Csal_2864 SUA5/YciO/YrdC-like protein YP_743464.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis YP_743465.1 PFAM: globin; KEGG: bmb:BruAb2_0335 hypothetical protein YP_743466.1 PFAM: Inositol phosphatase/fructose-1,6-bisphosphatase; KEGG: rfr:Rfer_2704 inositol phosphatase/fructose-1,6-bisphosphatase YP_743467.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: csa:Csal_0018 three-deoxy-D-manno-octulosonic-acid transferase-like protein YP_743468.1 TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: pfo:Pfl_1696 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase YP_743469.1 TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: mca:MCA1277 outer membrane protein TolC YP_743470.1 PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: rme:Rmet_2709 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_743471.1 PFAM: ribosomal protein L28; KEGG: pcr:Pcryo_1989 ribosomal protein L28 YP_743472.1 PFAM: ribosomal protein L33; KEGG: csa:Csal_2970 ribosomal protein L33 YP_743473.1 PFAM: protein of unknown function DUF411; KEGG: vch:VC2216 hypothetical protein YP_743474.1 PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: pca:Pcar_3103 N-methylhydantoinase A YP_743475.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA3078 ABC transporter, ATP-binding protein YP_743476.1 KEGG: noc:Noc_2645 ABC transporter, permease YP_743477.1 KEGG: mca:MCA3076 hypothetical protein YP_743478.1 KEGG: noc:Noc_2647 hypothetical protein YP_743479.1 KEGG: mca:MCA3072 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycolase YP_743480.1 PFAM: AMP-dependent synthetase and ligase; KEGG: dps:DP2097 probable acetyl-CoA synthetase YP_743481.1 PFAM: permease; KEGG: cps:CPS_4074 permease YP_743482.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sde:Sde_0078 GGDEF domain protein YP_743483.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb2752 FOG: GGDEF domain YP_743484.1 KEGG: noc:Noc_0769 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase YP_743485.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_743486.1 TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein 95; methyltransferase small; KEGG: noc:Noc_1931 conserved hypothetical protein 95 YP_743487.1 PFAM: peptidase M16 domain protein; KEGG: mca:MCA0064 hypothetical protein YP_743488.1 PFAM: peptidase M16 domain protein; KEGG: mca:MCA0063 peptidase, M16 family YP_743489.1 KEGG: csa:Csal_2989 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase YP_743490.1 KEGG: hch:HCH_00573 predicted ATPase involved in cell division; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase YP_743491.1 PFAM: protein of unknown function DUF214; KEGG: hch:HCH_00574 cell division protein YP_743492.1 TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: pae:PA0376 sigma factor RpoH YP_743494.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_743495.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_743496.1 PFAM: Ankyrin; KEGG: xcv:XCV0710 hypothetical protein YP_743497.1 PFAM: TPR repeat-containing protein; HemY domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cbu:CBU_2081 HemY protein YP_743498.1 PFAM: protein of unknown function DUF513, hemX; KEGG: noc:Noc_0504 protein of unknown function DUF513, HemX YP_743499.1 PFAM: Uroporphyrinogen III synthase HEM4; KEGG: neu:NE0591 uroporphyrinogen III synthase HEM4 YP_743500.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_743501.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: psp:PSPPH_0069 alginate biosynthesis regulatory protein AlgR YP_743502.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; KEGG: psp:PSPPH_0070 sensor histidine kinase FimS YP_743503.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_743504.1 PFAM: CBS domain containing protein; KEGG: ppr:PBPRA1175 hypothetical protein YP_743505.1 KEGG: mag:amb1214 predicted signal transduction protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_743506.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: ade:Adeh_0252 cold-shock DNA-binding domain protein YP_743508.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: eba:ebA1639 predicted nucleoside-diphosphate-sugar epimerase YP_743509.1 PFAM: major facilitator superfamily MFS_1; KEGG: csa:Csal_2143 major facilitator superfamily MFS_1 YP_743510.1 KEGG: csa:Csal_2599 beta-lactamase-like protein YP_743511.1 PFAM: peptidase M42 family protein; KEGG: dge:Dgeo_1994 peptidase M42 YP_743512.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates YP_743513.1 KEGG: rfr:Rfer_1983 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein YP_743514.1 KEGG: dvu:DVU0120 ABC transporter, substrate-binding protein YP_743515.1 KEGG: ilo:IL1543 hypothetical protein YP_743516.1 PFAM: regulatory protein, LuxR; KEGG: bur:Bcep18194_B0664 transcriptional regulator, LuxR family YP_743517.1 PFAM: regulator of chromosome condensation, RCC1; KEGG: gsu:GSU1251 BNR repeat domain protein YP_743518.1 PFAM: regulator of chromosome condensation, RCC1; KEGG: gsu:GSU1251 BNR repeat domain protein YP_743519.1 TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: csa:Csal_1919 molybdopterin binding protein YP_743520.1 PFAM: Squalene/phytoene synthase; KEGG: neu:NE1958 squalene and phytoene synthase YP_743521.1 PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: syf:Synpcc7942_1985 hypothetical protein YP_743522.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sme:SMa0279 hypothetical protein YP_743523.1 KEGG: gvi:gll1070 unknown protein YP_743524.1 PFAM: AsmA family protein; KEGG: noc:Noc_2265 conserved hypothetical protein, AsmA YP_743525.1 KEGG: noc:Noc_2267 A/G-specific adenine glycosylase MutY; TIGRFAM: A/G-specific adenine glycosylase; PFAM: NUDIX hydrolase; helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop YP_743526.1 PFAM: Fe(II) trafficking protein YggX; KEGG: noc:Noc_2268 Fe(II) trafficking protein YggX YP_743527.1 TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: gox:GOX1542 aluminum resistance protein YP_743528.1 PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: noc:Noc_0135 glutamate-ammonia-ligase adenylyltransferase YP_743529.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_743531.1 PFAM: Na+/Pi-cotransporter; KEGG: tdn:Tmden_1943 Na+/Pi-cotransporter YP_743532.1 proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain YP_743533.1 KEGG: gsu:GSU1615 hypothetical protein YP_743536.1 KEGG: reu:Reut_B4738 thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase YP_743537.1 PFAM: UspA domain protein; KEGG: tko:TK2034 universal stress protein YP_743538.1 KEGG: sru:SRU_2459 hypothetical protein YP_743539.1 PFAM: Bile acid:sodium symporter; KEGG: sru:SRU_2460 hypothetical protein YP_743540.1 KEGG: rba:RB9551 ArsA-catalytic subunit of arsenic oxyanion-translocating ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase YP_743541.1 PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: mfa:Mfla_1492 arsenical resistance operon trans-acting repressor ArsD YP_743542.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: gka:GK0589 arsenate reductase YP_743543.1 PFAM: regulatory protein, ArsR; KEGG: hch:HCH_04651 predicted transcriptional regulator YP_743544.1 PFAM: NADPH-dependent FMN reductase; KEGG: ilo:IL2128 predicted flavoprotein YP_743545.1 KEGG: sco:SCO4963 ABC transporter ATP-binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_743546.1 PFAM: ABC-2 type transporter; KEGG: ade:Adeh_3916 ABC transporter, inner membrane subunit YP_743548.1 KEGG: rfr:Rfer_2852 di-heme cytochrome c YP_743549.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: csa:Csal_2764 sulphate transporter YP_743550.1 PFAM: UspA domain protein; KEGG: csa:Csal_2763 UspA YP_743551.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; KEGG: pfo:Pfl_1111 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, LpxD YP_743552.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: mca:MCA0777 DNA binding response regulator, LuxR family YP_743553.1 PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: mfa:Mfla_0814 signal transduction histidine kinase, glucose-6-phosphate specific YP_743554.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC0139 TonB-dependent receptor YP_743555.1 KEGG: mfa:Mfla_2453 hypothetical protein YP_743556.1 PFAM: aldehyde dehydrogenase; KEGG: gka:GK0730 aldehyde dehydrogenase YP_743557.1 PFAM: protein of unknown function DUF779; KEGG: bha:BH0680 hypothetical protein YP_743558.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: csa:Csal_0094 TonB-dependent receptor YP_743559.1 PFAM: Pyrrolo-quinoline quinone; KEGG: sil:SPO1508 quinoprotein ethanol dehydrogenase YP_743560.1 KEGG: sil:SPO1515 cytochrome c550 YP_743561.1 SMART: extracellular solute-binding protein, family 3; KEGG: dar:Daro_1002 hypothetical protein YP_743562.1 KEGG: pfl:PFL_2219 hypothetical protein YP_743563.1 PFAM: beta-lactamase domain protein; KEGG: pfl:PFL_2220 hydrolase YP_743564.1 SMART: Rhodanese domain protein; KEGG: bja:bll6194 hypothetical protein YP_743566.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pae:PA4021 probable transcriptional regulator YP_743567.1 PFAM: glucose sorbosone dehydrogenase; KEGG: sru:SRU_0451 pyrroloquinoline-quinone glucose dehydrogenase YP_743568.1 KEGG: mag:amb3044 ABC-type tungstate transport system, permease component YP_743569.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb3045 ABC-type polar amino acid transport system, ATPase component YP_743570.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mag:amb3046 ABC-type tungstate transport system, periplasmic component YP_743571.1 KEGG: gme:Gmet_3124 hypothetical protein YP_743572.1 KEGG: hch:HCH_05426 hypothetical protein YP_743573.1 KEGG: ilo:IL0172 probable outer membrane protein YP_743574.1 KEGG: ilo:IL0173 predicted exporter, RND superfamily YP_743575.1 TIGRFAM: DNA binding domain, excisionase; KEGG: mag:amb2274 periplasmic molybdate-binding protein/domain YP_743576.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: sde:Sde_0996 single-stranded DNA-binding protein YP_743577.1 PFAM: major facilitator superfamily MFS_1; KEGG: noc:Noc_3022 major facilitator superfamily MFS_1 YP_743578.1 KEGG: mca:MCA2694 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_743579.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: dde:Dde_1620 glutamine amidotransferases-like YP_743580.1 KEGG: dde:Dde_1621 hypothetical protein YP_743581.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_743582.1 KEGG: rru:Rru_A1600 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase YP_743583.1 KEGG: noc:Noc_0245 hypothetical protein YP_743584.1 KEGG: noc:Noc_0246 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase YP_743585.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: pfo:Pfl_0405 type IV pilus assembly protein PilM YP_743586.1 PFAM: Fimbrial assembly family protein; KEGG: noc:Noc_0248 type 4 fimbrial biogenesis protein PilN YP_743587.1 PFAM: Pilus assembly protein, PilO; KEGG: eba:ebA2264 fimbrial type-IV assembly protein PilO YP_743588.1 PFAM: Pilus assembly protein, PilQ; KEGG: lpf:lpl0961 tfp pilus assembly protein PilP YP_743589.1 TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: noc:Noc_0251 fimbrial assembly protein PilQ precursor YP_743590.1 PFAM: Ig domain protein, group 1 domain protein; KEGG: rfr:Rfer_2924 Ig-like, group 1 YP_743591.1 PFAM: shikimate kinase; KEGG: aci:ACIAD3354 shikimate-kinase YP_743592.1 PFAM: 3-dehydroquinate synthase; KEGG: mca:MCA0331 3-dehydroquinate synthase YP_743593.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate YP_743594.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_743595.1 KEGG: sde:Sde_2681 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D) YP_743596.1 PFAM: NUDIX hydrolase; KEGG: tbd:Tbd_2635 hypothetical protein YP_743597.1 PFAM: protein of unknown function DUF1332; KEGG: rfr:Rfer_1818 protein of unknown function DUF1332 YP_743598.1 TIGRFAM: conserved hypothetical protein; KEGG: sme:SMa2229 hypothetical protein YP_743599.1 PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: eba:ebA4500 pyridine nucleotide transhydrogenase subunit beta YP_743600.1 KEGG: xoo:XOO3630 pyridine nucleotide transhydrogenase subunit alpha YP_743601.1 PFAM: alanine dehydrogenase/PNT domain protein; KEGG: eba:ebA4497 pyridine nucleotide transhydrogenase alpha subunit YP_743602.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mca:MCA2596 HNH endonuclease domain protein YP_743603.1 PFAM: Sporulation domain protein; KEGG: pae:PA5052 hypothetical protein YP_743604.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_743605.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: sme:SMa2355 DNA polymerase IV YP_743607.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_743608.1 PFAM: class II aldolase/adducin family protein; KEGG: rru:Rru_A0359 class II aldolase/adducin-like YP_743609.1 PFAM: NAD-glutamate dehydrogenase; KEGG: eba:ebA3619 NAD-glutamate dehydrogenase YP_743610.1 PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: tbd:Tbd_1468 hypothetical protein YP_743611.1 PFAM: alpha/beta hydrolase fold; KEGG: csa:Csal_1935 alpha/beta hydrolase YP_743612.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mca:MCA3070 exodeoxyribonuclease III YP_743613.1 PFAM: lipopolysaccharide biosynthesis YP_743614.1 PFAM: MscS Mechanosensitive ion channel; KEGG: csa:Csal_3104 MscS mechanosensitive ion channel YP_743615.1 PFAM: Malonyl-CoA decarboxylase; KEGG: rpd:RPD_0148 malonyl-CoA decarboxylase YP_743616.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sme:SMa0151 hypothetical protein YP_743617.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: sme:SMa0155 hypothetical protein YP_743618.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sme:SMa0157 hypothetical protein YP_743619.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: xcb:XC_0580 transcriptional regulator MdcY family YP_743620.1 catalyzes the formation of malonyl-CoA from malonate and CoA YP_743621.1 KEGG: noc:Noc_0304 hypothetical protein YP_743622.1 TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; KEGG: mfa:Mfla_0768 lipopolysaccharide heptosyltransferase II YP_743623.1 PFAM: glycosyl transferase, group 1; KEGG: psb:Psyr_0522 glycosyl transferase, group 1 YP_743624.1 PFAM: lipopolysaccharide kinase; KEGG: mfa:Mfla_0755 lipopolysaccharide kinase YP_743626.1 KEGG: sma:SAV5424 serine/threonine protein kinase YP_743627.1 PFAM: glycosyl transferase, family 9; KEGG: gsu:GSU2256 ADP-heptose--LPS heptosyltransferase II YP_743628.1 PFAM: glycosyl transferase, group 1; KEGG: ppu:PP4943 glycosyl transferase YP_743629.1 KEGG: pha:PSHAa2321 hypothetical protein YP_743630.1 PFAM: O-antigen polymerase; KEGG: rpa:RPA3948 hypothetical protein YP_743631.1 PFAM: glycosyl transferase, family 2; KEGG: pfo:Pfl_2033 hypothetical protein YP_743632.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mca:MCA1165 NAD-dependent epimerase/dehydratase YP_743633.1 KEGG: noc:Noc_2675 lipid A export ATP-binding/permease MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase YP_743634.1 KEGG: bbr:BB1918 hypothetical protein YP_743635.1 TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: pae:PA3242 probable lauroyl acyltransferase YP_743636.1 PFAM: glycosyl transferase, family 9; KEGG: xoo:XOO1056 saccharide biosynthesis regulatory protein YP_743637.1 catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position YP_743638.1 KEGG: aba:Acid345_2070 hypothetical protein YP_743639.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pca:Pcar_0024 ADP-L-glycero-D-mannoheptose-6-epimerase YP_743640.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose YP_743641.1 PFAM: MaoC domain protein dehydratase; KEGG: rru:Rru_A2964 MaoC-like dehydratase YP_743642.1 TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: rso:RSc2390 probable cobyric acid synthase YP_743643.1 PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: rso:RSp0615 probable cobyrinic acid A,C-diamide synthase YP_743644.1 KEGG: pfl:PFL_4431 cob(I)yrinic acid a,c-diamide adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_743645.1 PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pae:PA1271 probable tonB-dependent receptor YP_743646.1 catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole YP_743647.1 PFAM: Phosphoglycerate mutase; KEGG: noc:Noc_1928 phosphoglycerate/bisphosphoglycerate mutase YP_743648.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: pfl:PFL_4428 cobalamin biosynthesis protein CobD YP_743649.1 PFAM: aminotransferase, class I and II; KEGG: tbd:Tbd_2715 cobalamin biosynthetic protein CobC YP_743650.1 PFAM: periplasmic binding protein; KEGG: eba:ebA3688 probable substrate-binding periplasmic (PBP) ABC transporter protein YP_743651.1 PFAM: transport system permease; KEGG: eba:ebA4019 probable transmembrane ABC transporter protein,permease YP_743652.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sde:Sde_3202 ATP-binding ABC transporter protein YP_743653.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: pae:PA1279 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_743654.1 PFAM: cobalbumin biosynthesis enzyme; KEGG: pae:PA1278 cobinamide kinase YP_743655.1 KEGG: hch:HCH_00037 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein YP_743656.1 PFAM: phosphate transporter; KEGG: ilo:IL2207 phosphate permease YP_743657.1 PFAM: protein of unknown function DUF47; KEGG: pae:PA5208 hypothetical protein YP_743658.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_743659.1 KEGG: bbr:BB3303 hypothetical protein YP_743660.1 KEGG: mag:amb1288 hypothetical protein YP_743661.1 PFAM: OmpA/MotB domain protein; KEGG: rru:Rru_A1073 OmpA/MotB YP_743662.1 KEGG: gme:Gmet_0792 hypothetical protein YP_743663.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: syd:Syncc9605_1864 phosphoribulokinase YP_743664.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: pst:PSPTO0566 ribulose-phosphate 3-epimerase YP_743665.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: noc:Noc_0334 transcriptional regulatory protein, LysR family YP_743666.1 type III RuBisCO; involved in carbon fixation YP_743667.1 PFAM: ribulose bisphosphate carboxylase, small chain; KEGG: mca:MCA2744 ribulose bisphosphate carboxylase, small subunit YP_743668.1 PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: mca:MCA2746 nitric-oxide reductase NorQ protein YP_743669.1 PFAM: von Willebrand factor, type A; KEGG: mca:MCA2754 CbbO protein YP_743670.1 KEGG: bte:BTH_I1196 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase YP_743671.1 KEGG: noc:Noc_2808 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region YP_743672.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_743673.1 PFAM: pyruvate kinase; KEGG: noc:Noc_2805 pyruvate kinase YP_743674.1 class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis YP_743675.1 PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: noc:Noc_2994 phosphomannomutase YP_743676.1 KEGG: ypm:YP0048 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase YP_743677.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: noc:Noc_2992 DNA/pantothenate metabolism flavoprotein YP_743678.1 PFAM: sodium:neurotransmitter symporter; KEGG: mca:MCA2621 sodium-dependent transporter family protein YP_743679.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pae:PA5488 hypothetical protein YP_743680.1 PFAM: DSBA oxidoreductase; KEGG: mca:MCA2602 thiol:disulfide interchange protein DsbA YP_743681.1 PFAM: cytochrome c assembly protein; KEGG: bte:BTH_I3034 cytochrome c assembly family protein YP_743682.1 PFAM: ResB family protein; KEGG: mfa:Mfla_0233 ResB-like protein YP_743683.1 PFAM: cytochrome c, class I; KEGG: noc:Noc_0552 cytochrome c, class I YP_743684.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: sth:STH2047 cytochrome C peroxidase YP_743685.1 in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ YP_743686.1 PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: rru:Rru_A0594 hypothetical protein YP_743687.1 TIGRFAM: GTP-binding; PFAM: GTP-binding protein, HSR1-related; KEGG: csa:Csal_3117 GTP-binding protein, HSR1-related YP_743688.1 KEGG: hch:HCH_04240 uncharacterized protein with a C-terminal OMP (outer membrane protein) domain YP_743689.1 PFAM: Disulphide bond formation protein DsbB; KEGG: csa:Csal_2653 disulphide bond formation protein DsbB YP_743690.1 KEGG: mca:MCA2573 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2 YP_743691.1 PFAM: conserved hypothetical protein 730; KEGG: noc:Noc_0555 conserved hypothetical protein 730 YP_743692.1 KEGG: cvi:CV0777 hypothetical protein YP_743693.1 PFAM: UvrD/REP helicase; KEGG: sgl:SG2342 DNA helicase II YP_743694.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: xac:XAC0905 oxidative stress transcriptional regulator YP_743695.1 TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II; sugar isomerase (SIS); KEGG: mca:MCA0015 glucosamine--fructose-6-phosphate aminotransferase, isomerizing YP_743696.1 PFAM: UspA domain protein; KEGG: tko:TK2034 universal stress protein YP_743697.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: pae:PA5552 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase YP_743698.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_743699.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_743700.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_743701.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_743702.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_743703.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_743704.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_743705.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_743706.1 PFAM: ATP synthase I chain; KEGG: sdn:Sden_3759 ATP synthase I chain YP_743707.1 TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: noc:Noc_3082 ParB-like partition protein YP_743708.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pfl:PFL_6224 chromosome partitioning protein ParA YP_743709.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; methyltransferase small; Methyltransferase type 12; KEGG: noc:Noc_3084 glucose inhibited division protein YP_743710.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_743711.1 TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; GTP-binding; PFAM: GTP-binding protein, HSR1-related; KEGG: vpa:VP0002 thiophene and furan oxidation protein ThdF YP_743712.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: mfa:Mfla_2758 60 kDa inner membrane insertion protein YP_743713.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: mca:MCA3035 ribonuclease P protein component YP_743714.1 in Escherichia coli transcription of this gene is enhanced by polyamines