-- dump date 20140618_194207 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 187272000001 SEQ_END SEQ_END NC_008340.1 3275944 3275944 DR NC_008340.1; contig end 3275944..3275944 Alkalilimnicola ehrlichii MLHE-1 YP_740850.1 CDS dnaA NC_008340.1 75 1430 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosome replication initiator DnaA 75..1430 Alkalilimnicola ehrlichii MLHE-1 4269605 YP_740851.1 CDS Mlg_0002 NC_008340.1 1651 2751 D KEGG: xoo:XOO0002 DNA polymerase III beta chain; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III, beta chain; DNA polymerase III subunit beta 1651..2751 Alkalilimnicola ehrlichii MLHE-1 4269606 YP_740852.1 CDS Mlg_0003 NC_008340.1 2816 3880 D TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: sdn:Sden_0003 DNA replication and repair protein RecF; DNA replication and repair protein RecF 2816..3880 Alkalilimnicola ehrlichii MLHE-1 4269534 YP_740853.1 CDS Mlg_0004 NC_008340.1 3952 6369 D KEGG: vvy:VV0014 DNA gyrase, subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 3952..6369 Alkalilimnicola ehrlichii MLHE-1 4269535 YP_740854.1 CDS Mlg_0005 NC_008340.1 6397 7170 D KEGG: stt:t0948 trehalose phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; sucrose-6F-phosphate phosphohydrolase; HAD family hydrolase 6397..7170 Alkalilimnicola ehrlichii MLHE-1 4269536 YP_740855.1 CDS Mlg_0006 NC_008340.1 7163 8950 D PFAM: glycoside hydrolase 15-related; KEGG: csa:Csal_0235 glycoside hydrolase 15-related; glycoside hydrolase 15-like protein 7163..8950 Alkalilimnicola ehrlichii MLHE-1 4269537 YP_740856.1 CDS Mlg_0007 NC_008340.1 9005 10393 D PFAM: glycosyl transferase, family 20; KEGG: rru:Rru_A2485 alpha,alpha-trehalose-phosphate synthase (UDP-forming); alpha,alpha-trehalose-phosphate synthase 9005..10393 Alkalilimnicola ehrlichii MLHE-1 4269538 YP_740857.1 CDS Mlg_0008 NC_008340.1 10399 11340 D PFAM: Glucokinase; KEGG: mag:amb2112 glucokinase; glucokinase 10399..11340 Alkalilimnicola ehrlichii MLHE-1 4269539 YP_740858.1 CDS Mlg_0009 NC_008340.1 11353 12114 R PFAM: phospholipid/glycerol acyltransferase; KEGG: neu:NE1184 phospholipid and glycerol acyltransferase (from 'motifs_6.msf'); phospholipid/glycerol acyltransferase complement(11353..12114) Alkalilimnicola ehrlichii MLHE-1 4269540 YP_740859.1 CDS Mlg_0010 NC_008340.1 12111 12689 R TIGRFAM: histidinol-phosphate phosphatase; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: tbd:Tbd_2346 histidinol-phosphate phosphatase; D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase complement(12111..12689) Alkalilimnicola ehrlichii MLHE-1 4269541 YP_740860.1 CDS Mlg_0011 NC_008340.1 12664 14745 R KEGG: tcx:Tcr_0355 glycyl-tRNA synthetase, beta subunit; glycine--tRNA ligase complement(12664..14745) Alkalilimnicola ehrlichii MLHE-1 4269542 YP_740861.1 CDS glyQ NC_008340.1 14738 15691 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(14738..15691) Alkalilimnicola ehrlichii MLHE-1 4269543 YP_740862.1 CDS Mlg_0013 NC_008340.1 16030 17445 D KEGG: mca:MCA1677 glutamine synthetase, type I; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; L-glutamine synthetase 16030..17445 Alkalilimnicola ehrlichii MLHE-1 4269544 YP_740863.1 CDS Mlg_0014 NC_008340.1 17555 18082 D KEGG: csa:Csal_0244 hypothetical protein; hypothetical protein 17555..18082 Alkalilimnicola ehrlichii MLHE-1 4269545 YP_740864.1 CDS Mlg_0015 NC_008340.1 18231 19283 D KEGG: pae:PA5124 two-component sensor NtrB; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; nitrogen-specific signal transduction histidine kinase NtrB 18231..19283 Alkalilimnicola ehrlichii MLHE-1 4269546 YP_740865.1 CDS Mlg_0016 NC_008340.1 19280 20686 D KEGG: pae:PA5125 two-component response regulator NtrC; TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Fis family transcriptional regulator 19280..20686 Alkalilimnicola ehrlichii MLHE-1 4269547 YP_740866.1 CDS Mlg_0017 NC_008340.1 20902 21531 R PFAM: Radical SAM domain protein; KEGG: fra:Francci3_3380 conserved hypothetical protein; radical SAM domain-containing protein complement(20902..21531) Alkalilimnicola ehrlichii MLHE-1 4269548 YP_740867.1 CDS Mlg_0018 NC_008340.1 21528 22703 R KEGG: pca:Pcar_2564 hypothetical protein; hypothetical protein complement(21528..22703) Alkalilimnicola ehrlichii MLHE-1 4269549 YP_740868.1 CDS groEL NC_008340.1 22813 24474 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; molecular chaperone GroEL complement(22813..24474) Alkalilimnicola ehrlichii MLHE-1 4269550 YP_740869.1 CDS groES NC_008340.1 24517 24804 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(24517..24804) Alkalilimnicola ehrlichii MLHE-1 4269551 YP_740870.1 CDS Mlg_0021 NC_008340.1 25024 25398 D PFAM: CutA1 divalent ion tolerance protein; KEGG: noc:Noc_1056 CutA1 divalent ion tolerance protein; CutA1 divalent ion tolerance protein 25024..25398 Alkalilimnicola ehrlichii MLHE-1 4268878 YP_740871.1 CDS Mlg_0022 NC_008340.1 25408 27252 D PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: tcx:Tcr_0446 protein-disulfide reductase; cytochrome c biogenesis protein, transmembrane region 25408..27252 Alkalilimnicola ehrlichii MLHE-1 4268879 YP_740872.1 CDS Mlg_0023 NC_008340.1 27249 27752 D PFAM: Redoxin domain protein; KEGG: noc:Noc_1054 thioredoxin; redoxin domain-containing protein 27249..27752 Alkalilimnicola ehrlichii MLHE-1 4268880 YP_740873.1 CDS Mlg_0024 NC_008340.1 27880 28338 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 27880..28338 Alkalilimnicola ehrlichii MLHE-1 4268881 YP_740874.1 CDS Mlg_0025 NC_008340.1 28338 28802 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sbo:SBO_3133 acetylCoA carboxylase, BccP subunit; acetyl-CoA carboxylase, biotin carboxyl carrier protein 28338..28802 Alkalilimnicola ehrlichii MLHE-1 4268882 YP_740875.1 CDS Mlg_0026 NC_008340.1 28822 30165 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: noc:Noc_1051 acetyl-CoA carboxylase, biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 28822..30165 Alkalilimnicola ehrlichii MLHE-1 4268883 YP_740876.1 CDS Mlg_0027 NC_008340.1 30213 30788 D PFAM: YfaZ family protein; KEGG: hch:HCH_05290 hypothetical protein; YfaZ family protein 30213..30788 Alkalilimnicola ehrlichii MLHE-1 4268884 YP_740877.1 CDS Mlg_0028 NC_008340.1 30819 31628 R PFAM: protein of unknown function DUF81; KEGG: pae:PA0340 hypothetical protein; hypothetical protein complement(30819..31628) Alkalilimnicola ehrlichii MLHE-1 4268885 YP_740878.1 CDS Mlg_0029 NC_008340.1 31748 32710 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: noc:Noc_0390 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 31748..32710 Alkalilimnicola ehrlichii MLHE-1 4268886 YP_740879.1 CDS Mlg_0030 NC_008340.1 32714 33955 D PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; KEGG: pfl:PFL_5656 tRNA nucleotidyltransferase; metal dependent phosphohydrolase 32714..33955 Alkalilimnicola ehrlichii MLHE-1 4268887 YP_740880.1 CDS Mlg_0031 NC_008340.1 33968 35407 R hypothetical protein complement(33968..35407) Alkalilimnicola ehrlichii MLHE-1 4268888 YP_740881.1 CDS Mlg_0032 NC_008340.1 35512 36552 R PFAM: aldo/keto reductase; KEGG: csa:Csal_3045 aldo/keto reductase; aldo/keto reductase complement(35512..36552) Alkalilimnicola ehrlichii MLHE-1 4268889 YP_740882.1 CDS trmB NC_008340.1 36586 37299 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(36586..37299) Alkalilimnicola ehrlichii MLHE-1 4268890 YP_740883.1 CDS thiG NC_008340.1 37301 38089 R functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase complement(37301..38089) Alkalilimnicola ehrlichii MLHE-1 4268891 YP_740884.1 CDS Mlg_0035 NC_008340.1 38147 38368 R TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: csa:Csal_3147 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS complement(38147..38368) Alkalilimnicola ehrlichii MLHE-1 4268892 YP_740885.1 CDS Mlg_0037 NC_008340.1 39904 40293 R hypothetical protein complement(39904..40293) Alkalilimnicola ehrlichii MLHE-1 4268894 YP_740886.1 CDS Mlg_0038 NC_008340.1 40293 41309 R hypothetical protein complement(40293..41309) Alkalilimnicola ehrlichii MLHE-1 4270907 YP_740887.1 CDS Mlg_0039 NC_008340.1 41312 41827 R hypothetical protein complement(41312..41827) Alkalilimnicola ehrlichii MLHE-1 4270908 YP_740888.1 CDS Mlg_0040 NC_008340.1 41926 43257 R hypothetical protein complement(41926..43257) Alkalilimnicola ehrlichii MLHE-1 4270909 YP_740889.1 CDS Mlg_0041 NC_008340.1 43278 46577 R KEGG: vch:VCA0020 hypothetical protein; hypothetical protein complement(43278..46577) Alkalilimnicola ehrlichii MLHE-1 4270910 YP_740890.1 CDS Mlg_0042 NC_008340.1 46574 47473 R KEGG: vch:VCA0019 hypothetical protein; hypothetical protein complement(46574..47473) Alkalilimnicola ehrlichii MLHE-1 4270911 YP_740891.1 CDS Mlg_0043 NC_008340.1 47470 48432 R PFAM: Rhs element Vgr protein; KEGG: vch:VC1416 VgrG protein; Rhs element Vgr protein complement(47470..48432) Alkalilimnicola ehrlichii MLHE-1 4270912 YP_740892.1 CDS Mlg_0045 NC_008340.1 49079 49588 D PFAM: Uncharacterised conserved protein UCP028301; KEGG: vch:VCA0107 hypothetical protein; hypothetical protein 49079..49588 Alkalilimnicola ehrlichii MLHE-1 4270914 YP_740893.1 CDS Mlg_0046 NC_008340.1 49623 51101 D PFAM: protein of unknown function DUF877; KEGG: vch:VCA0108 hypothetical protein; hypothetical protein 49623..51101 Alkalilimnicola ehrlichii MLHE-1 4270915 YP_740894.1 CDS Mlg_0047 NC_008340.1 51108 51536 D PFAM: protein of unknown function DUF1316; KEGG: eca:ECA3443 hypothetical protein; hypothetical protein 51108..51536 Alkalilimnicola ehrlichii MLHE-1 4270916 YP_740895.1 CDS Mlg_0048 NC_008340.1 51556 53319 D PFAM: protein of unknown function DUF879; KEGG: vch:VCA0110 hypothetical protein; hypothetical protein 51556..53319 Alkalilimnicola ehrlichii MLHE-1 4270917 YP_740896.1 CDS Mlg_0049 NC_008340.1 53316 54302 D PFAM: protein of unknown function DUF1305; KEGG: eca:ECA3441 hypothetical protein; hypothetical protein 53316..54302 Alkalilimnicola ehrlichii MLHE-1 4270918 YP_740897.1 CDS Mlg_0050 NC_008340.1 54307 55017 D KEGG: vch:VCA0112 FHA domain-containing protein; FHA domain-containing protein 54307..55017 Alkalilimnicola ehrlichii MLHE-1 4270919 YP_740898.1 CDS Mlg_0051 NC_008340.1 55014 55586 D KEGG: plu:plu0366 hypothetical protein; hypothetical protein 55014..55586 Alkalilimnicola ehrlichii MLHE-1 4270920 YP_740899.1 CDS Mlg_0052 NC_008340.1 55586 56923 D PFAM: protein of unknown function DUF876; KEGG: vch:VCA0114 hypothetical protein; hypothetical protein 55586..56923 Alkalilimnicola ehrlichii MLHE-1 4270921 YP_740900.1 CDS Mlg_0053 NC_008340.1 56926 57741 D KEGG: vch:VCA0115 hypothetical protein; hypothetical protein 56926..57741 Alkalilimnicola ehrlichii MLHE-1 4270922 YP_740901.1 CDS Mlg_0054 NC_008340.1 57738 59315 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: vch:VCA0117 sigma-54 dependent transcriptional regulator; Fis family transcriptional regulator 57738..59315 Alkalilimnicola ehrlichii MLHE-1 4270923 YP_740902.1 CDS Mlg_0055 NC_008340.1 59312 59959 D KEGG: yps:YPTB3627 hypothetical protein; hypothetical protein 59312..59959 Alkalilimnicola ehrlichii MLHE-1 4270924 YP_740903.1 CDS Mlg_0056 NC_008340.1 59947 61389 D PFAM: ImpA domain protein; KEGG: vch:VCA0119 hypothetical protein; ImpA domain-containing protein 59947..61389 Alkalilimnicola ehrlichii MLHE-1 4270334 YP_740904.1 CDS Mlg_0057 NC_008340.1 61425 65042 D PFAM: ImcF domain protein; protein of unknown function DUF1215; KEGG: vch:VCA0120 IcmF-related protein; ImcF domain-containing protein 61425..65042 Alkalilimnicola ehrlichii MLHE-1 4270335 YP_740905.1 CDS Mlg_0058 NC_008340.1 65285 65803 D PFAM: protein of unknown function DUF796; KEGG: eca:ECA2866 hypothetical protein; hypothetical protein 65285..65803 Alkalilimnicola ehrlichii MLHE-1 4270336 YP_740906.1 CDS Mlg_0059 NC_008340.1 65890 66189 D PFAM: PAAR repeat-containing protein; KEGG: eca:ECA3478 hypothetical protein; PAAR repeat-containing protein 65890..66189 Alkalilimnicola ehrlichii MLHE-1 4270337 YP_740907.1 CDS Mlg_0060 NC_008340.1 66332 66931 D hypothetical protein 66332..66931 Alkalilimnicola ehrlichii MLHE-1 4270338 YP_740908.1 CDS dapF NC_008340.1 67016 67855 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 67016..67855 Alkalilimnicola ehrlichii MLHE-1 4270339 YP_740909.1 CDS Mlg_0062 NC_008340.1 67913 68611 D PFAM: protein of unknown function DUF484; KEGG: noc:Noc_0317 protein of unknown function DUF484; hypothetical protein 67913..68611 Alkalilimnicola ehrlichii MLHE-1 4270340 YP_740910.1 CDS Mlg_0063 NC_008340.1 68618 69532 D TIGRFAM: tyrosine recombinase XerC; PFAM: phage integrase; phage integrase domain protein SAM domain protein; KEGG: pae:PA5280 site-specific recombinase Sss; tyrosine recombinase XerC 68618..69532 Alkalilimnicola ehrlichii MLHE-1 4270341 YP_740911.1 CDS Mlg_0064 NC_008340.1 69593 70225 D PFAM: regulatory protein, TetR; KEGG: dar:Daro_1527 regulatory protein, TetR; TetR family transcriptional regulator 69593..70225 Alkalilimnicola ehrlichii MLHE-1 4270342 YP_740912.1 CDS Mlg_0065 NC_008340.1 70272 71252 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: eba:ebA3654 alcohol dehydrogenase; alcohol dehydrogenase 70272..71252 Alkalilimnicola ehrlichii MLHE-1 4270343 YP_740913.1 CDS Mlg_0066 NC_008340.1 71434 71985 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 71434..71985 Alkalilimnicola ehrlichii MLHE-1 4270344 YP_740914.1 CDS hslU NC_008340.1 72000 73322 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 72000..73322 Alkalilimnicola ehrlichii MLHE-1 4270345 YP_740915.1 CDS Mlg_0068 NC_008340.1 73394 73765 D PFAM: protein of unknown function DUF971; KEGG: noc:Noc_2342 protein of unknown function DUF971; hypothetical protein 73394..73765 Alkalilimnicola ehrlichii MLHE-1 4270346 YP_740916.1 CDS Mlg_0069 NC_008340.1 73769 74545 D TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferases; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dar:Daro_4117 ubiquinone/menaquinone biosynthesis methyltransferase; demethylmenaquinone methyltransferase 73769..74545 Alkalilimnicola ehrlichii MLHE-1 4270347 YP_740917.1 CDS Mlg_0070 NC_008340.1 74547 75176 D PFAM: protein of unknown function DUF1243; KEGG: csa:Csal_0596 protein of unknown function DUF1243; hypothetical protein 74547..75176 Alkalilimnicola ehrlichii MLHE-1 4270348 YP_740918.1 CDS Mlg_0071 NC_008340.1 75173 76834 D TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1 domain protein; KEGG: noc:Noc_2345 2-polyprenylphenol 6-hydroxylase; 2-octaprenylphenol hydroxylase 75173..76834 Alkalilimnicola ehrlichii MLHE-1 4270349 YP_740919.1 CDS Mlg_0072 NC_008340.1 76866 78752 R catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase complement(76866..78752) Alkalilimnicola ehrlichii MLHE-1 4270350 YP_740920.1 CDS Mlg_0073 NC_008340.1 78872 79732 D catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 78872..79732 Alkalilimnicola ehrlichii MLHE-1 4269901 YP_740921.1 CDS Mlg_0074 NC_008340.1 79807 82380 D KEGG: neu:NE1700 diguanylate cyclase/phosphodiesterase domain 2 (EAL); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 79807..82380 Alkalilimnicola ehrlichii MLHE-1 4269902 YP_740922.1 CDS Mlg_0075 NC_008340.1 82412 82969 D PFAM: RDD domain containing protein; KEGG: tcx:Tcr_1706 RDD; RDD domain-containing protein 82412..82969 Alkalilimnicola ehrlichii MLHE-1 4269903 YP_740923.1 CDS Mlg_0076 NC_008340.1 82991 83800 R PFAM: conserved hypothetical protein 245; KEGG: noc:Noc_1835 conserved hypothetical protein 245; hypothetical protein complement(82991..83800) Alkalilimnicola ehrlichii MLHE-1 4269904 YP_740924.1 CDS Mlg_0077 NC_008340.1 83797 84447 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_01608 ABC-type spermidine/putrescine transport system, ATPase components; ABC transporter-like protein complement(83797..84447) Alkalilimnicola ehrlichii MLHE-1 4269905 YP_740925.1 CDS Mlg_0078 NC_008340.1 84577 87321 D PFAM: transcriptional activator domain; KEGG: sme:SMa1591 adenylate cyclase; transcriptional activator domain-containing protein 84577..87321 Alkalilimnicola ehrlichii MLHE-1 4269906 YP_740926.1 CDS Mlg_0079 NC_008340.1 87516 88766 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: tcx:Tcr_1500 ammonium transporter; ammonium transporter complement(87516..88766) Alkalilimnicola ehrlichii MLHE-1 4269907 YP_740927.1 CDS Mlg_0080 NC_008340.1 88829 89167 R PFAM: nitrogen regulatory protein P-II; KEGG: hch:HCH_06398 nitrogen regulatory protein PII; nitrogen regulatory protein P-II complement(88829..89167) Alkalilimnicola ehrlichii MLHE-1 4269908 YP_740928.1 CDS Mlg_0081 NC_008340.1 89410 89724 D PFAM: protein of unknown function DUF526; KEGG: noc:Noc_2004 protein of unknown function DUF526; hypothetical protein 89410..89724 Alkalilimnicola ehrlichii MLHE-1 4269909 YP_740929.1 CDS Mlg_0082 NC_008340.1 89788 91305 D KEGG: noc:Noc_2003 Mg chelatase-related protein; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Mg chelatase, subunit ChlI 89788..91305 Alkalilimnicola ehrlichii MLHE-1 4269910 YP_740930.1 CDS Mlg_0083 NC_008340.1 91329 91883 R KEGG: bbr:BB4582 cytochrome c; cytochrome c complement(91329..91883) Alkalilimnicola ehrlichii MLHE-1 4269911 YP_740931.1 CDS Mlg_0084 NC_008340.1 92052 92966 R catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase complement(92052..92966) Alkalilimnicola ehrlichii MLHE-1 4269912 YP_740932.1 CDS Mlg_0085 NC_008340.1 93252 93461 R KEGG: noc:Noc_0305 hypothetical protein; hypothetical protein complement(93252..93461) Alkalilimnicola ehrlichii MLHE-1 4269913 YP_740933.1 CDS Mlg_0086 NC_008340.1 93478 94143 R Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A complement(93478..94143) Alkalilimnicola ehrlichii MLHE-1 4269914 YP_740934.1 CDS Mlg_0087 NC_008340.1 94226 95740 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 94226..95740 Alkalilimnicola ehrlichii MLHE-1 4269915 YP_740935.1 CDS Mlg_0088 NC_008340.1 95778 96449 D PFAM: regulatory protein, TetR; KEGG: neu:NE0300 bacterial regulatory proteins, TetR family; TetR family transcriptional regulator 95778..96449 Alkalilimnicola ehrlichii MLHE-1 4269916 YP_740936.1 CDS Mlg_0089 NC_008340.1 96485 97528 D PFAM: membrane-bound metal-dependent hydrolase; KEGG: noc:Noc_2821 membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase 96485..97528 Alkalilimnicola ehrlichii MLHE-1 4269917 YP_740937.1 CDS Mlg_0090 NC_008340.1 98663 100147 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: ava:Ava_2874 oxidoreductase FAD/NAD(P)-binding; oxidoreductase FAD/NAD(P)-binding subunit 98663..100147 Alkalilimnicola ehrlichii MLHE-1 4268828 YP_740938.1 CDS Mlg_0091 NC_008340.1 100152 101567 R PFAM: major facilitator superfamily MFS_1; KEGG: psb:Psyr_3491 major facilitator superfamily; major facilitator transporter complement(100152..101567) Alkalilimnicola ehrlichii MLHE-1 4268829 YP_740939.1 CDS Mlg_0092 NC_008340.1 101600 102112 R hypothetical protein complement(101600..102112) Alkalilimnicola ehrlichii MLHE-1 4268830 YP_740940.1 CDS Mlg_0093 NC_008340.1 102228 102761 D KEGG: noc:Noc_2484 transcriptional activator RfaH; TIGRFAM: transcriptional activator RfaH; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; transcription antitermination protein NusG 102228..102761 Alkalilimnicola ehrlichii MLHE-1 4268831 YP_740941.1 CDS Mlg_0094 NC_008340.1 103174 103569 R PFAM: Invasion gene expression up-regulator, SirB; KEGG: neu:NE1499 hypothetical protein; invasion gene expression up-regulator, SirB complement(103174..103569) Alkalilimnicola ehrlichii MLHE-1 4268832 YP_740942.1 CDS Mlg_0095 NC_008340.1 103675 104442 D PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: hch:HCH_01736 molybdopterin biosynthesis protein MoeB; UBA/THIF-type NAD/FAD binding protein 103675..104442 Alkalilimnicola ehrlichii MLHE-1 4268833 YP_740943.1 CDS Mlg_0096 NC_008340.1 104452 106131 R PFAM: Peptidoglycan-binding domain 1 protein; KEGG: hch:HCH_04383 hypothetical protein; peptidoglycan binding domain-containing protein complement(104452..106131) Alkalilimnicola ehrlichii MLHE-1 4268834 YP_740944.1 CDS Mlg_0097 NC_008340.1 106241 107095 D PFAM: peptidase S1 and S6, chymotrypsin/Hap; KEGG: nmu:Nmul_A2676 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6, chymotrypsin/Hap 106241..107095 Alkalilimnicola ehrlichii MLHE-1 4268835 YP_740945.1 CDS Mlg_0098 NC_008340.1 107272 107970 D TIGRFAM: PEP motif anchor-like; PFAM: protein of unknown function DUF1555; KEGG: tbd:Tbd_0194 hypothetical protein; PEP motif-containing protein 107272..107970 Alkalilimnicola ehrlichii MLHE-1 4268836 YP_740946.1 CDS Mlg_0099 NC_008340.1 108329 109117 R hypothetical protein complement(108329..109117) Alkalilimnicola ehrlichii MLHE-1 4268837 YP_740947.1 CDS Mlg_0100 NC_008340.1 109155 110594 R KEGG: dde:Dde_2931 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein; mannose-1-phosphate guanylyltransferase complement(109155..110594) Alkalilimnicola ehrlichii MLHE-1 4268838 YP_740948.1 CDS Mlg_0101 NC_008340.1 110648 111748 R KEGG: tbd:Tbd_2498 hypothetical protein; hypothetical protein complement(110648..111748) Alkalilimnicola ehrlichii MLHE-1 4268839 YP_740949.1 CDS Mlg_0102 NC_008340.1 111745 112650 R KEGG: tbd:Tbd_2497 HPr kinase; HPr kinase complement(111745..112650) Alkalilimnicola ehrlichii MLHE-1 4268840 YP_740950.1 CDS Mlg_0103 NC_008340.1 112654 112965 R hypothetical protein complement(112654..112965) Alkalilimnicola ehrlichii MLHE-1 4268841 YP_740951.1 CDS Mlg_0104 NC_008340.1 113050 113814 R KEGG: tbd:Tbd_2495 hypothetical protein; hypothetical protein complement(113050..113814) Alkalilimnicola ehrlichii MLHE-1 4268842 YP_740952.1 CDS Mlg_0105 NC_008340.1 114145 114888 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mba:Mbar_A0463 ubiquinone/menaquinone biosynthesis methyltransferase; type 11 methyltransferase complement(114145..114888) Alkalilimnicola ehrlichii MLHE-1 4268843 YP_740953.1 CDS Mlg_0106 NC_008340.1 115181 116563 D KEGG: nmu:Nmul_A2513 hypothetical protein; hypothetical protein 115181..116563 Alkalilimnicola ehrlichii MLHE-1 4268193 YP_740954.1 CDS Mlg_0107 NC_008340.1 116491 119859 R PFAM: VanZ family protein; KEGG: nmu:Nmul_A2514 VanZ like protein; VanZ family protein complement(116491..119859) Alkalilimnicola ehrlichii MLHE-1 4268194 YP_740955.1 CDS Mlg_0108 NC_008340.1 120159 120977 D TIGRFAM: PEP motif anchor-like; PEP motif-containing protein 120159..120977 Alkalilimnicola ehrlichii MLHE-1 4268195 YP_740956.1 CDS Mlg_0109 NC_008340.1 121114 122268 D PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: mag:amb0102 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 121114..122268 Alkalilimnicola ehrlichii MLHE-1 4268196 YP_740957.1 CDS Mlg_0110 NC_008340.1 122281 123231 D PFAM: polysaccharide deacetylase; KEGG: noc:Noc_1967 polysaccharide deacetylase; polysaccharide deacetylase 122281..123231 Alkalilimnicola ehrlichii MLHE-1 4268197 YP_740958.1 CDS Mlg_0111 NC_008340.1 123255 123758 R PFAM: Inorganic pyrophosphatase; KEGG: eba:ebA594 inorganic pyrophosphatase; inorganic pyrophosphatase complement(123255..123758) Alkalilimnicola ehrlichii MLHE-1 4268198 YP_740959.1 CDS Mlg_0112 NC_008340.1 123844 124848 D PFAM: polysaccharide deacetylase; KEGG: noc:Noc_2914 hypothetical protein; polysaccharide deacetylase 123844..124848 Alkalilimnicola ehrlichii MLHE-1 4268199 YP_740960.1 CDS Mlg_0113 NC_008340.1 124956 126005 D KEGG: neu:NE1793 hypothetical protein; hypothetical protein 124956..126005 Alkalilimnicola ehrlichii MLHE-1 4268200 YP_740961.1 CDS Mlg_0114 NC_008340.1 126691 127611 R KEGG: noc:Noc_2913 hypothetical protein; hypothetical protein complement(126691..127611) Alkalilimnicola ehrlichii MLHE-1 4268201 YP_740962.1 CDS Mlg_0115 NC_008340.1 127750 128769 R PFAM: glycosyl transferase, family 2; KEGG: rsp:RSP_1539 glycosyl transferase, family 2; glycosyl transferase complement(127750..128769) Alkalilimnicola ehrlichii MLHE-1 4268202 YP_740963.1 CDS Mlg_0116 NC_008340.1 129056 130321 R PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: cch:Cag_1580 transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(129056..130321) Alkalilimnicola ehrlichii MLHE-1 4268203 YP_740964.1 CDS Mlg_0119 NC_008340.1 131646 133046 D PFAM: O-antigen polymerase; KEGG: noc:Noc_1955 O-antigen polymerase; O-antigen polymerase 131646..133046 Alkalilimnicola ehrlichii MLHE-1 4268205 YP_740965.1 CDS Mlg_0120 NC_008340.1 133052 134959 D KEGG: eba:ebA4313 hypothetical protein; hypothetical protein 133052..134959 Alkalilimnicola ehrlichii MLHE-1 4268206 YP_740966.1 CDS Mlg_0121 NC_008340.1 134960 135907 D hypothetical protein 134960..135907 Alkalilimnicola ehrlichii MLHE-1 4268207 YP_740967.1 CDS Mlg_0122 NC_008340.1 135907 137793 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sru:SRU_0598 ABC transporter, multidrug efflux family; ABC transporter-like protein 135907..137793 Alkalilimnicola ehrlichii MLHE-1 4268208 YP_740968.1 CDS Mlg_0123 NC_008340.1 137818 138822 D KEGG: ana:all0589 unknown protein; hypothetical protein 137818..138822 Alkalilimnicola ehrlichii MLHE-1 4268209 YP_740969.1 CDS Mlg_0124 NC_008340.1 138879 139748 D KEGG: ret:RHE_CH03218 galactosyltransferase; galactosyltransferase 138879..139748 Alkalilimnicola ehrlichii MLHE-1 4268210 YP_740970.1 CDS Mlg_0125 NC_008340.1 140831 142432 D PFAM: AMP-dependent synthetase and ligase; KEGG: nmu:Nmul_A2670 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 140831..142432 Alkalilimnicola ehrlichii MLHE-1 4269818 YP_740971.1 CDS Mlg_0126 NC_008340.1 142429 143664 D PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: noc:Noc_1957 Orn/DAP/Arg decarboxylase 2; Orn/DAP/Arg decarboxylase 2 142429..143664 Alkalilimnicola ehrlichii MLHE-1 4269819 YP_740972.1 CDS Mlg_0127 NC_008340.1 143882 145096 D PFAM: protein of unknown function DUF201; KEGG: hch:HCH_02725 predicted ATP-grasp enzyme; hypothetical protein 143882..145096 Alkalilimnicola ehrlichii MLHE-1 4269820 YP_740973.1 CDS Mlg_0128 NC_008340.1 145227 146141 D KEGG: noc:Noc_1959 esterase/lipase/thioesterase; esterase 145227..146141 Alkalilimnicola ehrlichii MLHE-1 4269821 YP_740974.1 CDS Mlg_0129 NC_008340.1 146358 148046 D PFAM: transposase, IS4 family protein; KEGG: eba:ebA575 transposase, IS4 family; transposase, IS4 family protein 146358..148046 Alkalilimnicola ehrlichii MLHE-1 4269822 YP_740975.1 CDS Mlg_0130 NC_008340.1 148123 148929 R PFAM: amidinotransferase; KEGG: mbo:Mb2350c hypothetical protein; amidinotransferase complement(148123..148929) Alkalilimnicola ehrlichii MLHE-1 4269823 YP_740976.1 CDS Mlg_0131 NC_008340.1 148926 150548 R TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; KEGG: bxe:Bxe_A2036 non-ribosomal peptide synthase, amino acid adenylation domain; amino acid adenylation protein complement(148926..150548) Alkalilimnicola ehrlichii MLHE-1 4269824 YP_740977.1 CDS Mlg_0132 NC_008340.1 150706 152499 R PFAM: glycosyl transferase, family 2; KEGG: eba:ebA4304 glycosyl transferase, family 2; glycosyl transferase complement(150706..152499) Alkalilimnicola ehrlichii MLHE-1 4269825 YP_740978.1 CDS Mlg_0133 NC_008340.1 152513 152800 R KEGG: rfr:Rfer_0698 hypothetical protein; hypothetical protein complement(152513..152800) Alkalilimnicola ehrlichii MLHE-1 4269826 YP_740979.1 CDS Mlg_0134 NC_008340.1 152839 154695 D PFAM: asparagine synthase; KEGG: noc:Noc_1965 asparagine synthase, glutamine-hydrolyzing; asparagine synthase 152839..154695 Alkalilimnicola ehrlichii MLHE-1 4269827 YP_740980.1 CDS Mlg_0135 NC_008340.1 154692 156044 R KEGG: eba:ebA4317 CoA ligase, possible involved in capsular antigen synthesis (related to CapK protein); CoA ligase complement(154692..156044) Alkalilimnicola ehrlichii MLHE-1 4269828 YP_740981.1 CDS Mlg_0136 NC_008340.1 156041 157294 R PFAM: glycosyl transferase, group 1; KEGG: neu:NE0795 glycosyl transferases group 1; group 1 glycosyl transferase complement(156041..157294) Alkalilimnicola ehrlichii MLHE-1 4269829 YP_740982.1 CDS Mlg_0137 NC_008340.1 157284 158519 R PFAM: glycosyl transferase, group 1; KEGG: tbd:Tbd_0293 glycosyl transferase, group 1; group 1 glycosyl transferase complement(157284..158519) Alkalilimnicola ehrlichii MLHE-1 4269830 YP_740983.1 CDS Mlg_0138 NC_008340.1 158526 160421 R KEGG: tbd:Tbd_0292 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; asparagine synthase complement(158526..160421) Alkalilimnicola ehrlichii MLHE-1 4269831 YP_740984.1 CDS Mlg_0139 NC_008340.1 160425 161633 R PFAM: glycosyl transferase, group 1; KEGG: dar:Daro_2407 glycosyl transferase, group 1; group 1 glycosyl transferase complement(160425..161633) Alkalilimnicola ehrlichii MLHE-1 4269832 YP_740985.1 CDS Mlg_0140 NC_008340.1 161630 163204 R TIGRFAM: eight transmembrane protein EpsH; KEGG: neu:NE1797 hypothetical protein; eight transmembrane protein EpsH complement(161630..163204) Alkalilimnicola ehrlichii MLHE-1 4269833 YP_740986.1 CDS Mlg_0141 NC_008340.1 163194 164447 R PFAM: glycosyl transferase, group 1; KEGG: tbd:Tbd_0289 glycosyl transferase group 1; group 1 glycosyl transferase complement(163194..164447) Alkalilimnicola ehrlichii MLHE-1 4269834 YP_740987.1 CDS Mlg_0142 NC_008340.1 164452 165504 R KEGG: tbd:Tbd_0288 hypothetical protein; hypothetical protein complement(164452..165504) Alkalilimnicola ehrlichii MLHE-1 4269273 YP_740988.1 CDS Mlg_0143 NC_008340.1 165519 166451 R PFAM: polysaccharide deacetylase; KEGG: tbd:Tbd_0287 polysaccharide deacetylase; polysaccharide deacetylase complement(165519..166451) Alkalilimnicola ehrlichii MLHE-1 4269274 YP_740989.1 CDS Mlg_0144 NC_008340.1 166441 167490 R SMART: AAA ATPase; KEGG: tbd:Tbd_0285 ATPase; ATPase AAA complement(166441..167490) Alkalilimnicola ehrlichii MLHE-1 4269275 YP_740990.1 CDS Mlg_0145 NC_008340.1 167494 169026 R KEGG: neu:NE1802 hypothetical protein; hypothetical protein complement(167494..169026) Alkalilimnicola ehrlichii MLHE-1 4269276 YP_740991.1 CDS Mlg_0146 NC_008340.1 169016 169972 R KEGG: tbd:Tbd_0283 protein-tyrosine kinase; hypothetical protein complement(169016..169972) Alkalilimnicola ehrlichii MLHE-1 4269277 YP_740992.1 CDS Mlg_0147 NC_008340.1 169987 171498 R PFAM: lipopolysaccharide biosynthesis; KEGG: tbd:Tbd_0282 polysaccharide chain length determinant protein; lipopolysaccharide biosynthesis complement(169987..171498) Alkalilimnicola ehrlichii MLHE-1 4269278 YP_740993.1 CDS Mlg_0148 NC_008340.1 171849 172421 D PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 171849..172421 Alkalilimnicola ehrlichii MLHE-1 4269279 YP_740994.1 CDS Mlg_0149 NC_008340.1 172601 173395 D KEGG: eba:ebA845 hypothetical protein; hypothetical protein 172601..173395 Alkalilimnicola ehrlichii MLHE-1 4269280 YP_740995.1 CDS Mlg_0150 NC_008340.1 173440 174195 D KEGG: cps:CPS_4396 hypothetical protein; hypothetical protein 173440..174195 Alkalilimnicola ehrlichii MLHE-1 4269281 YP_740996.1 CDS Mlg_0151 NC_008340.1 174882 175784 D PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: eba:ebA7215 hypothetical protein; hypothetical protein 174882..175784 Alkalilimnicola ehrlichii MLHE-1 4269282 YP_740997.1 CDS Mlg_0152 NC_008340.1 175781 176590 D KEGG: tbd:Tbd_0634 hypothetical protein; hypothetical protein 175781..176590 Alkalilimnicola ehrlichii MLHE-1 4269283 YP_740998.1 CDS Mlg_0153 NC_008340.1 176619 178007 D KEGG: tbd:Tbd_0633 hypothetical protein; hypothetical protein 176619..178007 Alkalilimnicola ehrlichii MLHE-1 4269284 YP_740999.1 CDS Mlg_0154 NC_008340.1 178007 180262 D KEGG: tbd:Tbd_0632 exporter of the RND superfamily; RND efflux transporter 178007..180262 Alkalilimnicola ehrlichii MLHE-1 4269285 YP_741000.1 CDS Mlg_0155 NC_008340.1 180633 181610 D KEGG: tbd:Tbd_0194 hypothetical protein; hypothetical protein 180633..181610 Alkalilimnicola ehrlichii MLHE-1 4269286 YP_741001.1 CDS Mlg_0156 NC_008340.1 182160 185027 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_1987 TPR repeat protein; TPR repeat-containing protein complement(182160..185027) Alkalilimnicola ehrlichii MLHE-1 4269287 YP_741002.1 CDS Mlg_0157 NC_008340.1 185036 186382 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: noc:Noc_1997 two component transcriptional regulator, sigma-54 specific, fis family; Fis family transcriptional regulator complement(185036..186382) Alkalilimnicola ehrlichii MLHE-1 4269288 YP_741003.1 CDS Mlg_0158 NC_008340.1 186407 188461 R PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: neu:NE0377 sensory transduction histidine kinase; periplasmic sensor signal transduction histidine kinase complement(186407..188461) Alkalilimnicola ehrlichii MLHE-1 4269289 YP_741004.1 CDS Mlg_0159 NC_008340.1 188481 189878 R PFAM: sugar transferase; KEGG: eba:ebA40 glycosyltransferase; undecaprenyl-phosphate galactose phosphotransferase complement(188481..189878) Alkalilimnicola ehrlichii MLHE-1 4269290 YP_741005.1 CDS Mlg_0160 NC_008340.1 189911 190537 R PFAM: polysaccharide export protein; KEGG: neu:NE1805 polysaccharide export protein, outer membrane; polysaccharide export protein complement(189911..190537) Alkalilimnicola ehrlichii MLHE-1 4270721 YP_741006.1 CDS Mlg_0161 NC_008340.1 191318 191956 D PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ 191318..191956 Alkalilimnicola ehrlichii MLHE-1 4270722 YP_741007.1 CDS Mlg_0162 NC_008340.1 192009 192752 D PFAM: protein of unknown function DUF218; KEGG: eba:ebA2301 probable transmembrane protein; hypothetical protein 192009..192752 Alkalilimnicola ehrlichii MLHE-1 4270723 YP_741008.1 CDS Mlg_0163 NC_008340.1 192774 193769 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: hch:HCH_04939 UDP-glucose 4-epimerase; UDP-galactose 4-epimerase 192774..193769 Alkalilimnicola ehrlichii MLHE-1 4270724 YP_741009.1 CDS Mlg_0164 NC_008340.1 193784 195097 R KEGG: dps:DP2951 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; diguanylate cyclase complement(193784..195097) Alkalilimnicola ehrlichii MLHE-1 4270725 YP_741010.1 CDS Mlg_0165 NC_008340.1 195534 196418 R PFAM: Hsp33 protein; KEGG: mfa:Mfla_1108 HSP33 protein; heat shock protein 33 complement(195534..196418) Alkalilimnicola ehrlichii MLHE-1 4270726 YP_741011.1 CDS gatB NC_008340.1 196445 197881 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(196445..197881) Alkalilimnicola ehrlichii MLHE-1 4270727 YP_741012.1 CDS gatA NC_008340.1 197948 199402 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(197948..199402) Alkalilimnicola ehrlichii MLHE-1 4270728 YP_741013.1 CDS gatC NC_008340.1 199448 199735 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C complement(199448..199735) Alkalilimnicola ehrlichii MLHE-1 4270729 YP_741014.1 CDS Mlg_0169 NC_008340.1 199847 200890 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 199847..200890 Alkalilimnicola ehrlichii MLHE-1 4270730 YP_741015.1 CDS Mlg_0170 NC_008340.1 201035 201967 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 201035..201967 Alkalilimnicola ehrlichii MLHE-1 4270731 YP_741016.1 CDS Mlg_0171 NC_008340.1 201964 202452 D PFAM: Rod shape-determining protein MreD; KEGG: pae:PA4479 rod shape-determining protein MreD; rod shape-determining protein MreD 201964..202452 Alkalilimnicola ehrlichii MLHE-1 4270732 YP_741017.1 CDS Mlg_0172 NC_008340.1 202461 204353 D PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: pae:PA4003 penicillin-binding protein 2; peptidoglycan glycosyltransferase 202461..204353 Alkalilimnicola ehrlichii MLHE-1 4270733 YP_741018.1 CDS Mlg_0173 NC_008340.1 204340 205491 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: ppr:PBPRA2891 rod shape-determining protein RodA; rod shape-determining protein RodA 204340..205491 Alkalilimnicola ehrlichii MLHE-1 4270734 YP_741019.1 CDS Mlg_0174 NC_008340.1 205516 206508 D TIGRFAM: lytic murein transglycosylase B; KEGG: pfl:PFL_5450 lytic murein transglycosylase B; lytic murein transglycosylase B 205516..206508 Alkalilimnicola ehrlichii MLHE-1 4270735 YP_741020.1 CDS Mlg_0175 NC_008340.1 206505 207479 D TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; Sporulation domain protein; KEGG: csa:Csal_1548 rare lipoprotein A; rare lipoprotein A 206505..207479 Alkalilimnicola ehrlichii MLHE-1 4270736 YP_741021.1 CDS Mlg_0176 NC_008340.1 207551 208696 D PFAM: beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: tcx:Tcr_1635 serine-type D-Ala-D-Ala carboxypeptidase; penicillin-binding protein 6 207551..208696 Alkalilimnicola ehrlichii MLHE-1 4270737 YP_741022.1 CDS Mlg_0177 NC_008340.1 208708 209568 D PFAM: aminotransferase, class IV; KEGG: mca:MCA0106 D-amino acid aminotransferase; branched chain amino acid: 2-keto-4-methylthiobutyrate aminotransferase 208708..209568 Alkalilimnicola ehrlichii MLHE-1 4268619 YP_741023.1 CDS Mlg_0178 NC_008340.1 209570 209848 D PFAM: protein of unknown function DUF493; KEGG: mfa:Mfla_2499 protein of unknown function DUF493; hypothetical protein 209570..209848 Alkalilimnicola ehrlichii MLHE-1 4268620 YP_741024.1 CDS lipB NC_008340.1 210292 210939 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 210292..210939 Alkalilimnicola ehrlichii MLHE-1 4268621 YP_741025.1 CDS Mlg_0180 NC_008340.1 211123 211725 D PFAM: HupE/UreJ protein; KEGG: ret:RHE_PB00145 hypothetical protein; HupE/UreJ protein 211123..211725 Alkalilimnicola ehrlichii MLHE-1 4268622 YP_741026.1 CDS Mlg_0181 NC_008340.1 211736 212617 D PFAM: Urease accessory protein UreD; KEGG: reu:Reut_A0991 urease accessory protein UreD; urease accessory protein UreD 211736..212617 Alkalilimnicola ehrlichii MLHE-1 4268623 YP_741027.1 CDS ureA NC_008340.1 212628 212930 D UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma 212628..212930 Alkalilimnicola ehrlichii MLHE-1 4268624 YP_741028.1 CDS Mlg_0183 NC_008340.1 212942 213262 D KEGG: rso:RSc2033 probable urease (beta subunit) protein; TIGRFAM: urease, beta subunit; PFAM: Urease, beta subunit; urease subunit beta 212942..213262 Alkalilimnicola ehrlichii MLHE-1 4268625 YP_741029.1 CDS ureC NC_008340.1 213259 214965 D ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 213259..214965 Alkalilimnicola ehrlichii MLHE-1 4268626 YP_741030.1 CDS ureE NC_008340.1 215656 216147 D involved in the assembly of the urease metallocenter; possible nickel donor; urease accessory protein UreE 215656..216147 Alkalilimnicola ehrlichii MLHE-1 4268627 YP_741031.1 CDS Mlg_0186 NC_008340.1 216137 216823 D PFAM: Urease accessory protein UreF; KEGG: hch:HCH_04525 urease accessory protein UreF; urease accessory protein UreF 216137..216823 Alkalilimnicola ehrlichii MLHE-1 4268628 YP_741032.1 CDS Mlg_0187 NC_008340.1 217155 217790 D TIGRFAM: urease accessory protein UreG; PFAM: cobalamin synthesis protein, P47K; KEGG: pha:PSHAa1762 urease accessory protein; urease accessory protein UreG 217155..217790 Alkalilimnicola ehrlichii MLHE-1 4268629 YP_741033.1 CDS Mlg_0188 NC_008340.1 217984 219318 D KEGG: ppu:PP4841 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein 217984..219318 Alkalilimnicola ehrlichii MLHE-1 4268630 YP_741034.1 CDS Mlg_0189 NC_008340.1 219441 221144 D PFAM: inner-membrane translocator; KEGG: dar:Daro_1437 inner-membrane translocator; inner-membrane translocator 219441..221144 Alkalilimnicola ehrlichii MLHE-1 4268631 YP_741035.1 CDS Mlg_0190 NC_008340.1 221155 222249 D PFAM: inner-membrane translocator; KEGG: pst:PSPTO4887 branched-chain amino acid ABC transporter, permease; inner-membrane translocator 221155..222249 Alkalilimnicola ehrlichii MLHE-1 4268632 YP_741036.1 CDS Mlg_0191 NC_008340.1 222246 223088 D PFAM: ABC transporter related; KEGG: csa:Csal_2310 ABC transporter related; ABC transporter-like protein 222246..223088 Alkalilimnicola ehrlichii MLHE-1 4268633 YP_741037.1 CDS Mlg_0192 NC_008340.1 223090 223779 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_2309 ABC transporter related; ABC transporter-like protein 223090..223779 Alkalilimnicola ehrlichii MLHE-1 4268634 YP_741038.1 CDS Mlg_0193 NC_008340.1 223944 225221 D PFAM: major facilitator superfamily MFS_1; KEGG: gme:Gmet_0333 major facilitator superfamily MFS_1; major facilitator transporter 223944..225221 Alkalilimnicola ehrlichii MLHE-1 4268635 YP_741039.1 CDS Mlg_0194 NC_008340.1 225270 226286 R TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: csa:Csal_2408 TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein complement(225270..226286) Alkalilimnicola ehrlichii MLHE-1 4268636 YP_741040.1 CDS Mlg_0195 NC_008340.1 226766 227773 R PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: cya:CYA_0261 hypothetical protein; succinylglutamate desuccinylase/aspartoacylase complement(226766..227773) Alkalilimnicola ehrlichii MLHE-1 4269641 YP_741041.1 CDS Mlg_0196 NC_008340.1 227793 229226 R KEGG: noc:Noc_2286 hypothetical protein; hypothetical protein complement(227793..229226) Alkalilimnicola ehrlichii MLHE-1 4269642 YP_741042.1 CDS Mlg_0197 NC_008340.1 229266 229937 R PFAM: Nucleotidyl transferase; KEGG: ppu:PP0406 nucleotidyltransferase; nucleotidyl transferase complement(229266..229937) Alkalilimnicola ehrlichii MLHE-1 4269643 YP_741043.1 CDS Mlg_0198 NC_008340.1 229934 230944 R PFAM: aminoglycoside phosphotransferase; KEGG: pfl:PFL_5645 conserved hypothetical protein; aminoglycoside phosphotransferase complement(229934..230944) Alkalilimnicola ehrlichii MLHE-1 4269644 YP_741044.1 CDS Mlg_0199 NC_008340.1 231092 233365 D PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: noc:Noc_1724 organic solvent tolerance protein; organic solvent tolerance protein 231092..233365 Alkalilimnicola ehrlichii MLHE-1 4269645 YP_741045.1 CDS Mlg_0200 NC_008340.1 233386 234687 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: noc:Noc_1723 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 233386..234687 Alkalilimnicola ehrlichii MLHE-1 4269646 YP_741046.1 CDS Mlg_0201 NC_008340.1 234684 235679 D KEGG: tbd:Tbd_2339 4-hydroxythreonine-4-phosphate dehydrogenase PdxA; TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 234684..235679 Alkalilimnicola ehrlichii MLHE-1 4269647 YP_741047.1 CDS Mlg_0202 NC_008340.1 235690 235929 R PFAM: thiamineS protein; KEGG: aci:ACIAD1905 hypothetical protein; sulfur transfer protein ThiS complement(235690..235929) Alkalilimnicola ehrlichii MLHE-1 4269648 YP_741048.1 CDS Mlg_0203 NC_008340.1 235946 237244 R PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_3345 major facilitator superfamily MFS_1; major facilitator transporter complement(235946..237244) Alkalilimnicola ehrlichii MLHE-1 4269649 YP_741049.1 CDS Mlg_0204 NC_008340.1 237308 238369 R PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: csa:Csal_1199 succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase complement(237308..238369) Alkalilimnicola ehrlichii MLHE-1 4269650 YP_741050.1 CDS Mlg_0205 NC_008340.1 238372 238902 R PFAM: transferase hexapeptide repeat containing protein; KEGG: pae:PA0066 hypothetical protein; hexapaptide repeat-containing transferase complement(238372..238902) Alkalilimnicola ehrlichii MLHE-1 4269651 YP_741051.1 CDS Mlg_0206 NC_008340.1 238965 239849 R PFAM: UspA domain protein; KEGG: mbo:Mb2051c hypothetical protein; UspA domain-containing protein complement(238965..239849) Alkalilimnicola ehrlichii MLHE-1 4269652 YP_741052.1 CDS Mlg_0207 NC_008340.1 239974 240360 R hypothetical protein complement(239974..240360) Alkalilimnicola ehrlichii MLHE-1 4269653 YP_741053.1 CDS Mlg_0208 NC_008340.1 240519 241094 R PFAM: regulatory protein, TetR; KEGG: bur:Bcep18194_B0251 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(240519..241094) Alkalilimnicola ehrlichii MLHE-1 4269654 YP_741054.1 CDS Mlg_0209 NC_008340.1 241222 242469 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: csa:Csal_3112 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(241222..242469) Alkalilimnicola ehrlichii MLHE-1 4269655 YP_741055.1 CDS Mlg_0210 NC_008340.1 242493 242615 R hypothetical protein complement(242493..242615) Alkalilimnicola ehrlichii MLHE-1 4269656 YP_741056.1 CDS Mlg_0211 NC_008340.1 242763 243443 D PFAM: phospholipase/Carboxylesterase; KEGG: pol:Bpro_3402 carboxylesterase; carboxylesterase 242763..243443 Alkalilimnicola ehrlichii MLHE-1 4269657 YP_741057.1 CDS Mlg_0212 NC_008340.1 243457 243951 R PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: tde:TDE1925 peptidyl-prolyl cis-trans isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(243457..243951) Alkalilimnicola ehrlichii MLHE-1 4268912 YP_741058.1 CDS Mlg_0213 NC_008340.1 244529 245431 R PFAM: cytoplasmic chaperone TorD family protein; KEGG: cch:Cag_0951 hypothetical protein; cytoplasmic chaperone TorD family protein complement(244529..245431) Alkalilimnicola ehrlichii MLHE-1 4268913 YP_741059.1 CDS Mlg_0214 NC_008340.1 245773 246966 R PFAM: Polysulphide reductase, NrfD; KEGG: wsu:WS0707 molybdopterin oxidoreductase, membrane subunit; polysulfide reductase NrfD complement(245773..246966) Alkalilimnicola ehrlichii MLHE-1 4268914 YP_741060.1 CDS Mlg_0215 NC_008340.1 246981 247730 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dvu:DVU0693 molybdopterin oxidoreductase, iron-sulfur cluster-binding subunit; 4Fe-4S ferredoxin complement(246981..247730) Alkalilimnicola ehrlichii MLHE-1 4268915 YP_741061.1 CDS Mlg_0216 NC_008340.1 247756 250269 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dsy:DSY4131 anaerobic dehydrogenase; molybdopterin oxidoreductase complement(247756..250269) Alkalilimnicola ehrlichii MLHE-1 4268916 YP_741062.1 CDS Mlg_0217 NC_008340.1 250266 251552 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sth:STH228 polyferredoxin; 4Fe-4S ferredoxin complement(250266..251552) Alkalilimnicola ehrlichii MLHE-1 4268917 YP_741063.1 CDS Mlg_0218 NC_008340.1 251788 252687 D TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: dar:Daro_2602 phosphonate-binding periplasmic protein; phosphonate ABC transporter, periplasmic phosphonate-binding protein 251788..252687 Alkalilimnicola ehrlichii MLHE-1 4268918 YP_741064.1 CDS Mlg_0219 NC_008340.1 252684 254150 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: dar:Daro_2601 ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal; periplasmic sensor signal transduction histidine kinase 252684..254150 Alkalilimnicola ehrlichii MLHE-1 4268919 YP_741065.1 CDS Mlg_0220 NC_008340.1 254147 255481 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: eba:ebA6441 acetoacetate metabolism regulatory protein AtoC; Fis family transcriptional regulator 254147..255481 Alkalilimnicola ehrlichii MLHE-1 4268920 YP_741066.1 CDS Mlg_0221 NC_008340.1 255604 256749 D catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; transaldolase 255604..256749 Alkalilimnicola ehrlichii MLHE-1 4268921 YP_741067.1 CDS apaG NC_008340.1 256746 257132 D protein associated with Co2+ and Mg2+ efflux; ApaG 256746..257132 Alkalilimnicola ehrlichii MLHE-1 4268922 YP_741068.1 CDS apaH NC_008340.1 257180 258019 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 257180..258019 Alkalilimnicola ehrlichii MLHE-1 4268923 YP_741069.1 CDS Mlg_0224 NC_008340.1 258038 258598 R PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: noc:Noc_0866 N-acetylmuramoyl-L-alanine amidase, family 2; N-acetyl-anhydromuranmyl-L-alanine amidase complement(258038..258598) Alkalilimnicola ehrlichii MLHE-1 4268924 YP_741070.1 CDS Mlg_0225 NC_008340.1 258662 260755 D PFAM: protein of unknown function DUF255; KEGG: noc:Noc_2549 protein of unknown function DUF255; hypothetical protein 258662..260755 Alkalilimnicola ehrlichii MLHE-1 4268925 YP_741071.1 CDS Mlg_0226 NC_008340.1 260842 261330 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: mag:amb1318 predicted transcriptional regulator; BadM/Rrf2 family transcriptional regulator 260842..261330 Alkalilimnicola ehrlichii MLHE-1 4268926 YP_741072.1 CDS Mlg_0227 NC_008340.1 261316 262488 R PFAM: NnrS family protein; KEGG: tbd:Tbd_1409 uncharacterized protein involved in response to NO; K07234 uncharacterized protein involved in response to NO; NnrS family protein complement(261316..262488) Alkalilimnicola ehrlichii MLHE-1 4268927 YP_741073.1 CDS Mlg_0228 NC_008340.1 262798 263793 D PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: rba:RB13094 conserved hypothetical protein- cobalamin synthesis protein CobW; cobalamin synthesis protein, P47K 262798..263793 Alkalilimnicola ehrlichii MLHE-1 4268928 YP_741074.1 CDS Mlg_0229 NC_008340.1 263894 264193 R TIGRFAM: regulatory protein, FmdB family; KEGG: sde:Sde_0912 hypothetical protein; FmdB family regulatory protein complement(263894..264193) Alkalilimnicola ehrlichii MLHE-1 4268929 YP_741075.1 CDS Mlg_0230 NC_008340.1 264419 264967 R PFAM: OmpA domain protein transmembrane region-containing protein; KEGG: par:Psyc_2129 possible OmpA family protein; OmpA domain-containing protein complement(264419..264967) Alkalilimnicola ehrlichii MLHE-1 4270857 YP_741076.1 CDS Mlg_0231 NC_008340.1 265122 265328 D KEGG: cvi:CV1996 hypothetical protein; hypothetical protein 265122..265328 Alkalilimnicola ehrlichii MLHE-1 4270858 YP_741077.1 CDS Mlg_0232 NC_008340.1 265325 266521 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: mca:MCA1754 monooxygenase, FAD-binding; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 265325..266521 Alkalilimnicola ehrlichii MLHE-1 4270859 YP_741078.1 CDS Mlg_0233 NC_008340.1 266658 267050 D KEGG: cte:CT2131 hypothetical protein; hypothetical protein 266658..267050 Alkalilimnicola ehrlichii MLHE-1 4270860 YP_741079.1 CDS Mlg_0234 NC_008340.1 267142 267813 R KEGG: reu:Reut_A1445 cell divisionFtsK/SpoIIIE; hypothetical protein complement(267142..267813) Alkalilimnicola ehrlichii MLHE-1 4270861 YP_741080.1 CDS Mlg_0235 NC_008340.1 267857 269518 R PFAM: ferredoxin-dependent glutamate synthase; KEGG: bbr:BB1970 hypothetical protein; ferredoxin-dependent glutamate synthase complement(267857..269518) Alkalilimnicola ehrlichii MLHE-1 4270862 YP_741081.1 CDS Mlg_0236 NC_008340.1 269554 270135 R KEGG: vvy:VV0792 hypothetical protein; hypothetical protein complement(269554..270135) Alkalilimnicola ehrlichii MLHE-1 4270863 YP_741082.1 CDS Mlg_0237 NC_008340.1 270284 270595 R KEGG: cne:CNK02440 hypothetical protein; hypothetical protein complement(270284..270595) Alkalilimnicola ehrlichii MLHE-1 4270864 YP_741083.1 CDS Mlg_0238 NC_008340.1 270695 271120 R PFAM: DoxX family protein; KEGG: bja:bll6552 hypothetical protein; DoxX family protein complement(270695..271120) Alkalilimnicola ehrlichii MLHE-1 4270865 YP_741084.1 CDS Mlg_0239 NC_008340.1 271350 273839 R PFAM: Tubulin-tyrosine ligase; KEGG: cfa:488525 similar to Tubulin tyrosine ligase-like protein 4; tubulin-tyrosine ligase complement(271350..273839) Alkalilimnicola ehrlichii MLHE-1 4270866 YP_741085.1 CDS Mlg_0240 NC_008340.1 274467 275303 R KEGG: xac:XAC3140 hypothetical protein; hypothetical protein complement(274467..275303) Alkalilimnicola ehrlichii MLHE-1 4270868 YP_741086.1 CDS Mlg_0241 NC_008340.1 275300 275854 R PFAM: OmpA/MotB domain protein; KEGG: noc:Noc_0146 OmpA/MotB; OmpA/MotB domain-containing protein complement(275300..275854) Alkalilimnicola ehrlichii MLHE-1 4270869 YP_741087.1 CDS tolB NC_008340.1 275919 277205 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(275919..277205) Alkalilimnicola ehrlichii MLHE-1 4270870 YP_741088.1 CDS Mlg_0243 NC_008340.1 277223 278224 R TIGRFAM: TonB family protein; PFAM: TolA family protein; KEGG: noc:Noc_0144 TonB-like; TonB family protein complement(277223..278224) Alkalilimnicola ehrlichii MLHE-1 4270871 YP_741089.1 CDS Mlg_0244 NC_008340.1 278226 278675 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ilo:IL1082 biopolymer transport protein; biopolymer transport protein ExbD/TolR complement(278226..278675) Alkalilimnicola ehrlichii MLHE-1 4270872 YP_741090.1 CDS Mlg_0245 NC_008340.1 278688 279395 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: mca:MCA1226 TolQ protein; MotA/TolQ/ExbB proton channel complement(278688..279395) Alkalilimnicola ehrlichii MLHE-1 4268722 YP_741091.1 CDS Mlg_0246 NC_008340.1 279764 282094 R Phosphate acetyltransferase; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(279764..282094) Alkalilimnicola ehrlichii MLHE-1 4268723 YP_741092.1 CDS Mlg_0247 NC_008340.1 282362 282646 R hypothetical protein complement(282362..282646) Alkalilimnicola ehrlichii MLHE-1 4268724 YP_741093.1 CDS Mlg_0248 NC_008340.1 283255 284214 D TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: vpa:VP1251 thioredoxin reductase; thioredoxin reductase 283255..284214 Alkalilimnicola ehrlichii MLHE-1 4268725 YP_741094.1 CDS Mlg_0249 NC_008340.1 284503 285000 D PFAM: Fimbrial protein pilin; KEGG: pae:PA4525 type 4 fimbrial precursor PilA; fimbrial protein pilin 284503..285000 Alkalilimnicola ehrlichii MLHE-1 4268726 YP_741095.1 CDS Mlg_0250 NC_008340.1 285166 285579 R PFAM: DNA polymerase, beta domain protein region; KEGG: mta:Moth_0178 DNA polymerase, beta-like region; DNA polymerase subunit beta complement(285166..285579) Alkalilimnicola ehrlichii MLHE-1 4268727 YP_741096.1 CDS Mlg_0251 NC_008340.1 285586 285939 D KEGG: lpp:lpp0203 hypothetical protein; hypothetical protein 285586..285939 Alkalilimnicola ehrlichii MLHE-1 4268728 YP_741097.1 CDS Mlg_0252 NC_008340.1 285949 286386 D PFAM: Fimbrial protein pilin; KEGG: xcb:XC_1058 pilin; fimbrial protein pilin 285949..286386 Alkalilimnicola ehrlichii MLHE-1 4268729 YP_741098.1 CDS Mlg_0253 NC_008340.1 286695 287201 D KEGG: neu:NE1751 type-4 fimbrial pilin related signal peptide protein; type-4 fimbrial pilin related signal peptide protein 286695..287201 Alkalilimnicola ehrlichii MLHE-1 4268730 YP_741099.1 CDS Mlg_0254 NC_008340.1 287245 287667 D KEGG: csa:Csal_0486 methylation; pilus assembly protein 287245..287667 Alkalilimnicola ehrlichii MLHE-1 4268731 YP_741100.1 CDS Mlg_0255 NC_008340.1 287676 288356 D TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: csa:Csal_0491 Tfp pilus assembly protein PilW-like protein; prepilin-type cleavage/methylation-like protein 287676..288356 Alkalilimnicola ehrlichii MLHE-1 4268732 YP_741101.1 CDS Mlg_0256 NC_008340.1 288421 289653 D KEGG: mtu:Rv3512 PE-PGRS family protein; hypothetical protein 288421..289653 Alkalilimnicola ehrlichii MLHE-1 4268733 YP_741102.1 CDS Mlg_0257 NC_008340.1 289856 290305 R KEGG: psb:Psyr_4853 hypothetical protein; hypothetical protein complement(289856..290305) Alkalilimnicola ehrlichii MLHE-1 4268734 YP_741103.1 CDS Mlg_0258 NC_008340.1 290398 291753 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: hch:HCH_05925 sigma 54-dependent transcriptional activator containing CheY-like receiver domain; Fis family transcriptional regulator complement(290398..291753) Alkalilimnicola ehrlichii MLHE-1 4268735 YP_741104.1 CDS Mlg_0259 NC_008340.1 291875 292213 R hypothetical protein complement(291875..292213) Alkalilimnicola ehrlichii MLHE-1 4268736 YP_741105.1 CDS pyrE NC_008340.1 292213 292872 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(292213..292872) Alkalilimnicola ehrlichii MLHE-1 4268737 YP_741106.1 CDS Mlg_0261 NC_008340.1 292878 295526 R catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase complement(292878..295526) Alkalilimnicola ehrlichii MLHE-1 4268738 YP_741107.1 CDS Mlg_0262 NC_008340.1 296153 297913 R TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: CBS domain containing protein; isocitrate/isopropylmalate dehydrogenase; KEGG: pae:PA2623 isocitrate dehydrogenase; isocitrate dehydrogenase, NADP-dependent complement(296153..297913) Alkalilimnicola ehrlichii MLHE-1 4268739 YP_741108.1 CDS Mlg_0263 NC_008340.1 298188 299054 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: pfo:Pfl_2625 hypothetical protein; Sel1 domain-containing protein complement(298188..299054) Alkalilimnicola ehrlichii MLHE-1 4270481 YP_741109.1 CDS Mlg_0264 NC_008340.1 299109 300740 R KEGG: pfo:Pfl_2629 hypothetical protein; hypothetical protein complement(299109..300740) Alkalilimnicola ehrlichii MLHE-1 4270482 YP_741110.1 CDS Mlg_0265 NC_008340.1 300745 301806 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: pfo:Pfl_2625 hypothetical protein; Sel1 domain-containing protein complement(300745..301806) Alkalilimnicola ehrlichii MLHE-1 4270483 YP_741111.1 CDS Mlg_0266 NC_008340.1 301817 305119 R KEGG: pfo:Pfl_2629 hypothetical protein; hypothetical protein complement(301817..305119) Alkalilimnicola ehrlichii MLHE-1 4270484 YP_741112.1 CDS Mlg_0267 NC_008340.1 305374 306198 R KEGG: noc:Noc_1721 16S rRNA dimethylase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; dimethyladenosine transferase complement(305374..306198) Alkalilimnicola ehrlichii MLHE-1 4270485 YP_741113.1 CDS Mlg_0268 NC_008340.1 306279 306920 D PFAM: protein of unknown function DUF502; KEGG: pca:Pcar_2706 hypothetical protein; hypothetical protein 306279..306920 Alkalilimnicola ehrlichii MLHE-1 4270486 YP_741114.1 CDS aceE NC_008340.1 307186 309873 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 307186..309873 Alkalilimnicola ehrlichii MLHE-1 4270487 YP_741115.1 CDS Mlg_0270 NC_008340.1 309952 311649 D KEGG: xcb:XC_3691 dihydrolipoamide acetyltranferase; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 309952..311649 Alkalilimnicola ehrlichii MLHE-1 4270488 YP_741116.1 CDS Mlg_0271 NC_008340.1 311669 313450 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: nmu:Nmul_A0515 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 311669..313450 Alkalilimnicola ehrlichii MLHE-1 4270489 YP_741117.1 CDS Mlg_0272 NC_008340.1 313963 314850 R TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; KEGG: xoo:XOO3644 protoporphyrinogen oxidase; HemK family modification methylase complement(313963..314850) Alkalilimnicola ehrlichii MLHE-1 4270490 YP_741118.1 CDS Mlg_0273 NC_008340.1 314847 315122 R PFAM: protein of unknown function DUF343; KEGG: xcb:XC_1612 hypothetical protein; hypothetical protein complement(314847..315122) Alkalilimnicola ehrlichii MLHE-1 4270491 YP_741119.1 CDS clpX NC_008340.1 315307 316554 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 315307..316554 Alkalilimnicola ehrlichii MLHE-1 4270492 YP_741120.1 CDS Mlg_0275 NC_008340.1 316674 317750 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 316674..317750 Alkalilimnicola ehrlichii MLHE-1 4270493 YP_741121.1 CDS Mlg_0276 NC_008340.1 317884 318315 D TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: hch:HCH_06256 DnaK suppressor protein; TraR/DksA family transcriptional regulator 317884..318315 Alkalilimnicola ehrlichii MLHE-1 4270494 YP_741122.1 CDS Mlg_0277 NC_008340.1 318437 319192 D PFAM: metallophosphoesterase; Calcineurin phosphoesterase C-terminal domain protein; KEGG: pae:PA4969 Icc protein; metallophosphoesterase 318437..319192 Alkalilimnicola ehrlichii MLHE-1 4270495 YP_741123.1 CDS prfA NC_008340.1 319199 320284 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(319199..320284) Alkalilimnicola ehrlichii MLHE-1 4270496 YP_741124.1 CDS hemA NC_008340.1 320211 321551 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(320211..321551) Alkalilimnicola ehrlichii MLHE-1 4270497 YP_741125.1 CDS Mlg_0280 NC_008340.1 321692 323446 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mca:MCA1053 TPR domain protein; hypothetical protein 321692..323446 Alkalilimnicola ehrlichii MLHE-1 4269309 YP_741126.1 CDS Mlg_0281 NC_008340.1 323443 324045 D PFAM: outer membrane lipoprotein LolB; KEGG: csa:Csal_1526 outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 323443..324045 Alkalilimnicola ehrlichii MLHE-1 4269310 YP_741127.1 CDS ipk NC_008340.1 324042 324917 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 324042..324917 Alkalilimnicola ehrlichii MLHE-1 4269311 YP_741128.1 CDS Mlg_0283 NC_008340.1 325079 326035 D KEGG: mca:MCA1056 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 325079..326035 Alkalilimnicola ehrlichii MLHE-1 4269313 YP_741129.1 CDS Mlg_0284 NC_008340.1 326135 326779 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 326135..326779 Alkalilimnicola ehrlichii MLHE-1 4269314 YP_741130.1 CDS Mlg_0285 NC_008340.1 326812 327405 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 326812..327405 Alkalilimnicola ehrlichii MLHE-1 4269315 YP_741131.1 CDS Mlg_0286 NC_008340.1 327417 328508 D TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein, HSR1-related; Protein of unknown function DUF933; KEGG: noc:Noc_0517 GTP-binding protein, HSR1-related; GTP-binding protein YchF 327417..328508 Alkalilimnicola ehrlichii MLHE-1 4269316 YP_741132.1 CDS Mlg_0287 NC_008340.1 328505 329368 R KEGG: noc:Noc_1326 sterol desaturase-related protein; sterol desaturase-like protein complement(328505..329368) Alkalilimnicola ehrlichii MLHE-1 4269317 YP_741133.1 CDS Mlg_0288 NC_008340.1 329454 329687 D KEGG: sil:SPO0665 SlyX protein; SlyX protein 329454..329687 Alkalilimnicola ehrlichii MLHE-1 4269318 YP_741134.1 CDS Mlg_0289 NC_008340.1 329892 331235 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: mca:MCA2487 UDP-glucose 6-dehydrogenase; UDP-glucose 6-dehydrogenase 329892..331235 Alkalilimnicola ehrlichii MLHE-1 4269319 YP_741135.1 CDS Mlg_0290 NC_008340.1 331243 332904 D PFAM: phosphoglucose isomerase (PGI); KEGG: pca:Pcar_2367 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 331243..332904 Alkalilimnicola ehrlichii MLHE-1 4269320 YP_741136.1 CDS Mlg_0291 NC_008340.1 332901 333773 R PFAM: protein of unknown function DUF815; KEGG: nmu:Nmul_A1008 protein of unknown function DUF815; hypothetical protein complement(332901..333773) Alkalilimnicola ehrlichii MLHE-1 4269321 YP_741137.1 CDS Mlg_0292 NC_008340.1 335185 335898 D KEGG: pae:PA0504 dethiobiotin synthase; TIGRFAM: dethiobiotin synthase; PFAM: Cobyrinic acid a,c-diamide synthase; dethiobiotin synthase 335185..335898 Alkalilimnicola ehrlichii MLHE-1 4269322 YP_741138.1 CDS Mlg_0293 NC_008340.1 336105 337040 D PFAM: cytochrome c oxidase, subunit II; cytochrome C oxidase subunit II, transmembrane region; KEGG: mca:MCA0879 cytochrome c oxidase, subunit II; cytochrome c oxidase, subunit II 336105..337040 Alkalilimnicola ehrlichii MLHE-1 4269323 YP_741139.1 CDS Mlg_0294 NC_008340.1 337041 338621 D PFAM: cytochrome c oxidase, subunit I; KEGG: pha:PSHAa2871 cytochrome c oxidase, subunit I; cytochrome-c oxidase 337041..338621 Alkalilimnicola ehrlichii MLHE-1 4269324 YP_741140.1 CDS Mlg_0295 NC_008340.1 338766 339308 D PFAM: cytochrome c oxidase assembly protein CtaG/Cox11; KEGG: noc:Noc_3045 cytochrome c oxidase assembly protein CtaG/Cox11; cytochrome c oxidase assembly protein CtaG/Cox11 338766..339308 Alkalilimnicola ehrlichii MLHE-1 4269325 YP_741141.1 CDS Mlg_0296 NC_008340.1 339340 340200 D PFAM: cytochrome c oxidase, subunit III; KEGG: xcb:XC_3901 cytochrome c oxidase subunit III; cytochrome c oxidase, subunit III 339340..340200 Alkalilimnicola ehrlichii MLHE-1 4270756 YP_741142.1 CDS Mlg_0297 NC_008340.1 340225 340452 R KEGG: xoo:XOO4136 hypothetical protein; hypothetical protein complement(340225..340452) Alkalilimnicola ehrlichii MLHE-1 4270757 YP_741143.1 CDS Mlg_0298 NC_008340.1 340504 341271 D KEGG: pae:PA0110 hypothetical protein; hypothetical protein 340504..341271 Alkalilimnicola ehrlichii MLHE-1 4270758 YP_741144.1 CDS Mlg_0299 NC_008340.1 341258 341884 D KEGG: dar:Daro_1464 probable transmembrane protein; transmembrane protein 341258..341884 Alkalilimnicola ehrlichii MLHE-1 4270759 YP_741145.1 CDS Mlg_0300 NC_008340.1 341884 342969 D PFAM: cytochrome oxidase assembly; KEGG: noc:Noc_3040 cytochrome oxidase assembly; cytochrome oxidase assembly 341884..342969 Alkalilimnicola ehrlichii MLHE-1 4270760 YP_741146.1 CDS Mlg_0301 NC_008340.1 342980 343909 D TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: mca:MCA0062 protoheme IX farnesyl transferase; protoheme IX farnesyltransferase 342980..343909 Alkalilimnicola ehrlichii MLHE-1 4270761 YP_741147.1 CDS Mlg_0302 NC_008340.1 343926 344324 R KEGG: pca:Pcar_0180 hypothetical protein; hypothetical protein complement(343926..344324) Alkalilimnicola ehrlichii MLHE-1 4270762 YP_741148.1 CDS Mlg_0303 NC_008340.1 344331 344927 R KEGG: ade:Adeh_2674 hypothetical protein; hypothetical protein complement(344331..344927) Alkalilimnicola ehrlichii MLHE-1 4270763 YP_741149.1 CDS Mlg_0304 NC_008340.1 344914 345204 R hypothetical protein complement(344914..345204) Alkalilimnicola ehrlichii MLHE-1 4270764 YP_741150.1 CDS Mlg_0305 NC_008340.1 345278 346165 R PFAM: VacJ family lipoprotein; KEGG: mfa:Mfla_0585 VacJ-like lipoprotein; VacJ family lipoprotein complement(345278..346165) Alkalilimnicola ehrlichii MLHE-1 4270765 YP_741151.1 CDS Mlg_0306 NC_008340.1 346195 347262 R KEGG: xcb:XC_0831 hypothetical protein; periplasmic ligand-binding sensor protein complement(346195..347262) Alkalilimnicola ehrlichii MLHE-1 4270766 YP_741152.1 CDS Mlg_0307 NC_008340.1 347252 348691 R PFAM: FAD linked oxidase domain protein; KEGG: mag:amb3713 FAD/FMN-containing dehydrogenase; FAD linked oxidase domain-containing protein complement(347252..348691) Alkalilimnicola ehrlichii MLHE-1 4270767 YP_741153.1 CDS Mlg_0308 NC_008340.1 348705 350138 R PFAM: phospholipase D/Transphosphatidylase; KEGG: dde:Dde_0590 phospholipase D/transphosphatidylase; cardiolipin synthetase 2 complement(348705..350138) Alkalilimnicola ehrlichii MLHE-1 4270768 YP_741154.1 CDS Mlg_0309 NC_008340.1 350247 351905 D TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: cps:CPS_4027 transporter, BCCT family; choline/carnitine/betaine transporter 350247..351905 Alkalilimnicola ehrlichii MLHE-1 4270769 YP_741155.1 CDS Mlg_0310 NC_008340.1 352037 352468 D PFAM: ferric-uptake regulator; KEGG: mag:amb4306 Fe2+/Zn2+ uptake regulation protein; ferric uptake regulator family protein 352037..352468 Alkalilimnicola ehrlichii MLHE-1 4270770 YP_741156.1 CDS Mlg_0311 NC_008340.1 352574 353398 D PFAM: protein of unknown function DUF88; KEGG: dps:DP0904 hypothetical protein; hypothetical protein 352574..353398 Alkalilimnicola ehrlichii MLHE-1 4270771 YP_741157.1 CDS Mlg_0312 NC_008340.1 353409 354365 R KEGG: bha:BH1795 arsenical pump-driving ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; arsenite-activated ATPase ArsA complement(353409..354365) Alkalilimnicola ehrlichii MLHE-1 4270772 YP_741158.1 CDS Mlg_0313 NC_008340.1 354375 354650 R KEGG: bha:BH1794 hypothetical protein; hypothetical protein complement(354375..354650) Alkalilimnicola ehrlichii MLHE-1 4270056 YP_741159.1 CDS Mlg_0314 NC_008340.1 354702 356462 R PFAM: carbon starvation protein CstA; KEGG: csa:Csal_2003 carbon starvation protein CstA; carbon starvation protein CstA complement(354702..356462) Alkalilimnicola ehrlichii MLHE-1 4270057 YP_741160.1 CDS Mlg_0315 NC_008340.1 356712 357152 D PFAM: UspA domain protein; KEGG: tfu:Tfu_1412 hypothetical protein; UspA domain-containing protein 356712..357152 Alkalilimnicola ehrlichii MLHE-1 4270058 YP_741161.1 CDS Mlg_0316 NC_008340.1 357201 358139 R PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: mca:MCA0398 oxidoreductase, Gfo/Idh/MocA family; oxidoreductase domain-containing protein complement(357201..358139) Alkalilimnicola ehrlichii MLHE-1 4270059 YP_741162.1 CDS Mlg_0317 NC_008340.1 358217 359467 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rru:Rru_A1910 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase complement(358217..359467) Alkalilimnicola ehrlichii MLHE-1 4270060 YP_741163.1 CDS Mlg_0318 NC_008340.1 359603 360466 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: csa:Csal_3035 thioredoxin-related; thioredoxin 359603..360466 Alkalilimnicola ehrlichii MLHE-1 4270061 YP_741164.1 CDS Mlg_0319 NC_008340.1 360591 361379 D PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: sbo:SBO_1727 Fnr; Crp/Fnr family transcriptional regulator 360591..361379 Alkalilimnicola ehrlichii MLHE-1 4270062 YP_741165.1 CDS Mlg_0320 NC_008340.1 361454 361906 R PFAM: heat shock protein Hsp20; KEGG: mca:MCA2532 heat shock protein, HSP20 family; heat shock protein Hsp20 complement(361454..361906) Alkalilimnicola ehrlichii MLHE-1 4270063 YP_741166.1 CDS Mlg_0321 NC_008340.1 362065 362901 D hypothetical protein 362065..362901 Alkalilimnicola ehrlichii MLHE-1 4270064 YP_741167.1 CDS Mlg_0322 NC_008340.1 362917 363783 D PFAM: Ion transport protein; KEGG: jan:Jann_0087 ion transport protein; Ion transport protein 362917..363783 Alkalilimnicola ehrlichii MLHE-1 4270065 YP_741168.1 CDS Mlg_0323 NC_008340.1 363899 364099 D PFAM: Heavy metal transport/detoxification protein; KEGG: tth:TTC1356 heavy metal binding protein; heavy metal transport/detoxification protein 363899..364099 Alkalilimnicola ehrlichii MLHE-1 4270066 YP_741169.1 CDS Mlg_0324 NC_008340.1 364099 364389 D PFAM: protein of unknown function DUF156; KEGG: ttj:TTHA1719 copper homeostasis operon regulatory protein; hypothetical protein 364099..364389 Alkalilimnicola ehrlichii MLHE-1 4270067 YP_741170.1 CDS Mlg_0325 NC_008340.1 364411 366876 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dge:Dgeo_0089 ATPase, P type cation/copper-transporter; heavy metal translocating P-type ATPase 364411..366876 Alkalilimnicola ehrlichii MLHE-1 4270068 YP_741171.1 CDS Mlg_0326 NC_008340.1 366873 367625 R PFAM: protein of unknown function DUF1365; KEGG: rpb:RPB_2905 protein of unknown function DUF1365; hypothetical protein complement(366873..367625) Alkalilimnicola ehrlichii MLHE-1 4270069 YP_741172.1 CDS Mlg_0327 NC_008340.1 373701 375056 R catalyzes the formation of L-tryptophan from indole and L-serine; tryptophan synthase subunit beta complement(373701..375056) Alkalilimnicola ehrlichii MLHE-1 4269890 YP_741173.1 CDS Mlg_0328 NC_008340.1 375146 375820 R PFAM: OmpA/MotB domain protein; 17 kDa surface antigen; KEGG: sme:SMc00354 hypothetical protein; OmpA/MotB domain-containing protein complement(375146..375820) Alkalilimnicola ehrlichii MLHE-1 4269891 YP_741174.1 CDS Mlg_0329 NC_008340.1 375845 376012 R hypothetical protein complement(375845..376012) Alkalilimnicola ehrlichii MLHE-1 4269892 YP_741175.1 CDS Mlg_0330 NC_008340.1 376136 376378 D PFAM: SirA family protein; KEGG: nmu:Nmul_A1011 SirA-like; SirA family protein 376136..376378 Alkalilimnicola ehrlichii MLHE-1 4269893 YP_741176.1 CDS Mlg_0331 NC_008340.1 376431 376796 R KEGG: csa:Csal_2464 hypothetical protein; hypothetical protein complement(376431..376796) Alkalilimnicola ehrlichii MLHE-1 4269894 YP_741177.1 CDS Mlg_0332 NC_008340.1 376939 377937 R SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease complement(376939..377937) Alkalilimnicola ehrlichii MLHE-1 4269895 YP_741178.1 CDS Mlg_0333 NC_008340.1 378002 378286 D hypothetical protein 378002..378286 Alkalilimnicola ehrlichii MLHE-1 4269896 YP_741179.1 CDS Mlg_0334 NC_008340.1 378386 379504 D PFAM: AFG1-family ATPase; KEGG: hch:HCH_05300 predicted ATPase; AFG1 family ATPase 378386..379504 Alkalilimnicola ehrlichii MLHE-1 4269897 YP_741180.1 CDS Mlg_0335 NC_008340.1 379529 380452 R PFAM: histone deacetylase superfamily; KEGG: mca:MCA2486 histone deacetylase/AcuC/AphA family protein; histone deacetylase superfamily protein complement(379529..380452) Alkalilimnicola ehrlichii MLHE-1 4269898 YP_741181.1 CDS Mlg_0336 NC_008340.1 380472 381179 R PFAM: Spermine synthase; KEGG: sat:SYN_01347 spermidine synthase; spermine synthase complement(380472..381179) Alkalilimnicola ehrlichii MLHE-1 4269899 YP_741182.1 CDS Mlg_0337 NC_008340.1 381291 381899 R TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW; Methyltransferase type 11; Methyltransferase type 12; KEGG: hch:HCH_06360 methionine biosynthesis protein MetW; methionine biosynthesis protein MetW complement(381291..381899) Alkalilimnicola ehrlichii MLHE-1 4269900 YP_741183.1 CDS metX NC_008340.1 381896 383050 R Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(381896..383050) Alkalilimnicola ehrlichii MLHE-1 4268326 YP_741184.1 CDS Mlg_0339 NC_008340.1 383130 383708 R PFAM: protein of unknown function YGGT; KEGG: mca:MCA1534 YGGT family protein; hypothetical protein complement(383130..383708) Alkalilimnicola ehrlichii MLHE-1 4268327 YP_741185.1 CDS Mlg_0340 NC_008340.1 383708 384535 R KEGG: noc:Noc_3002 delta 1-pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase complement(383708..384535) Alkalilimnicola ehrlichii MLHE-1 4268328 YP_741186.1 CDS Mlg_0341 NC_008340.1 384532 385245 R TIGRFAM: Protein of unknown function UPF0001; PFAM: alanine racemase domain protein; KEGG: bpm:BURPS1710b_3346 conserved hypothetical protein TIGR00044; hypothetical protein complement(384532..385245) Alkalilimnicola ehrlichii MLHE-1 4268329 YP_741187.1 CDS Mlg_0342 NC_008340.1 385353 386390 D KEGG: noc:Noc_3004 pilus retraction protein PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 385353..386390 Alkalilimnicola ehrlichii MLHE-1 4268330 YP_741188.1 CDS Mlg_0343 NC_008340.1 386451 387608 D TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: pae:PA0396 twitching motility protein PilU; twitching motility protein 386451..387608 Alkalilimnicola ehrlichii MLHE-1 4268331 YP_741189.1 CDS Mlg_0344 NC_008340.1 387868 388584 R KEGG: noc:Noc_0363 dihydroorotate dehydrogenase electron transfer subunit; dihydroorotate dehydrogenase electron transfer subunit complement(387868..388584) Alkalilimnicola ehrlichii MLHE-1 4268332 YP_741190.1 CDS Mlg_0345 NC_008340.1 388568 389848 R TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; KEGG: mca:MCA2332 dihydroorotase; dihydroorotase complement(388568..389848) Alkalilimnicola ehrlichii MLHE-1 4268333 YP_741191.1 CDS pyrB NC_008340.1 389845 390810 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase complement(389845..390810) Alkalilimnicola ehrlichii MLHE-1 4268334 YP_741192.1 CDS Mlg_0347 NC_008340.1 390807 391316 R regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase complement(390807..391316) Alkalilimnicola ehrlichii MLHE-1 4268335 YP_741193.1 CDS Mlg_0348 NC_008340.1 391313 391747 R PFAM: Holliday junction resolvase YqgF; SMART: Resolvase, RNase H domain protein fold; KEGG: eca:ECA3926 Holliday junction resolvase; Holliday junction resolvase YqgF complement(391313..391747) Alkalilimnicola ehrlichii MLHE-1 4268336 YP_741194.1 CDS Mlg_0349 NC_008340.1 391740 392315 R PFAM: protein of unknown function DUF179; KEGG: noc:Noc_0368 protein of unknown function DUF179; hypothetical protein complement(391740..392315) Alkalilimnicola ehrlichii MLHE-1 4268337 YP_741195.1 CDS Mlg_0350 NC_008340.1 392368 393255 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: xac:XAC3104 TonB protein; TonB family protein complement(392368..393255) Alkalilimnicola ehrlichii MLHE-1 4268338 YP_741196.1 CDS Mlg_0351 NC_008340.1 393252 393797 R PFAM: Heptaprenyl diphosphate synthase component I; KEGG: dar:Daro_0068 heptaprenyl diphosphate synthase component I; heptaprenyl diphosphate synthase component I complement(393252..393797) Alkalilimnicola ehrlichii MLHE-1 4268339 YP_741197.1 CDS Mlg_0352 NC_008340.1 393800 394162 R KEGG: tbd:Tbd_0528 hypothetical protein; hypothetical protein complement(393800..394162) Alkalilimnicola ehrlichii MLHE-1 4268340 YP_741198.1 CDS Mlg_0353 NC_008340.1 394159 395211 R PFAM: ApbE family lipoprotein; KEGG: rsp:RSP_3188 ApbE family protein; ApbE family lipoprotein complement(394159..395211) Alkalilimnicola ehrlichii MLHE-1 4268341 YP_741199.1 CDS Mlg_0354 NC_008340.1 395208 396152 R KEGG: hch:HCH_00547 glutathione synthetase; TIGRFAM: glutathione synthetase; PFAM: protein of unknown function DUF201; glutathione synthetase domain protein; glutathione synthetase, ATP-binding; RimK domain protein ATP-grasp; glutathione synthase complement(395208..396152) Alkalilimnicola ehrlichii MLHE-1 4268342 YP_741200.1 CDS Mlg_0355 NC_008340.1 396299 396784 D PFAM: response regulator receiver; KEGG: xcb:XC_1183 pilus protein; response regulator receiver protein 396299..396784 Alkalilimnicola ehrlichii MLHE-1 4268343 YP_741201.1 CDS Mlg_0356 NC_008340.1 396828 397193 D PFAM: response regulator receiver; KEGG: pae:PA0409 twitching motility protein PilH; response regulator receiver protein 396828..397193 Alkalilimnicola ehrlichii MLHE-1 4268947 YP_741202.1 CDS Mlg_0357 NC_008340.1 397199 397750 D PFAM: CheW domain protein; KEGG: ppu:PP4990 type IV pili signal transduction protein PilI; chemotaxis protein CheW 397199..397750 Alkalilimnicola ehrlichii MLHE-1 4268948 YP_741203.1 CDS Mlg_0358 NC_008340.1 397779 399461 D PFAM: chemotaxis sensory transducer; KEGG: pae:PA0411 twitching motility protein PilJ; methyl-accepting chemotaxis sensory transducer 397779..399461 Alkalilimnicola ehrlichii MLHE-1 4268949 YP_741204.1 CDS Mlg_0359 NC_008340.1 399454 404958 D PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: noc:Noc_0126 CheA signal transduction histidine kinase; CheA signal transduction histidine kinases 399454..404958 Alkalilimnicola ehrlichii MLHE-1 4268950 YP_741205.1 CDS Mlg_0360 NC_008340.1 404955 405515 D KEGG: xcb:XC_1190 chemosensory pili system protein ChpC; chemosensory pili system protein ChpC 404955..405515 Alkalilimnicola ehrlichii MLHE-1 4268951 YP_741206.1 CDS Mlg_0361 NC_008340.1 405545 406291 R PFAM: protein of unknown function DUF558; KEGG: tbd:Tbd_0155 hypothetical protein; hypothetical protein complement(405545..406291) Alkalilimnicola ehrlichii MLHE-1 4268952 YP_741207.1 CDS Mlg_0362 NC_008340.1 406288 407637 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase complement(406288..407637) Alkalilimnicola ehrlichii MLHE-1 4268953 YP_741208.1 CDS Mlg_0363 NC_008340.1 408187 409521 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(408187..409521) Alkalilimnicola ehrlichii MLHE-1 4268954 YP_741209.1 CDS Mlg_0364 NC_008340.1 409526 410692 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine in arginine biosynthesis; acetylornithine deacetylase complement(409526..410692) Alkalilimnicola ehrlichii MLHE-1 4268955 YP_741210.1 CDS Mlg_0365 NC_008340.1 410724 411383 R PFAM: protein of unknown function DUF1058; SH3, type 3 domain protein; SMART: SH3 domain protein domain protein; KEGG: neu:NE2386 bacterial SH3 domain homologue; hypothetical protein complement(410724..411383) Alkalilimnicola ehrlichii MLHE-1 4268956 YP_741211.1 CDS Mlg_0366 NC_008340.1 411612 412823 D PFAM: RNA methylase; conserved hypothetical protein 95; methyltransferase small; KEGG: pfl:PFL_5872 conserved hypothetical protein; SAM-dependent methyltransferase 411612..412823 Alkalilimnicola ehrlichii MLHE-1 4268957 YP_741212.1 CDS rho NC_008340.1 413143 414399 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(413143..414399) Alkalilimnicola ehrlichii MLHE-1 4268958 YP_741213.1 CDS Mlg_0368 NC_008340.1 414540 414866 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: tbd:Tbd_0036 thioredoxin; thioredoxin complement(414540..414866) Alkalilimnicola ehrlichii MLHE-1 4268959 YP_741214.1 CDS Mlg_0369 NC_008340.1 415048 415734 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hch:HCH_00564 predicted hydrolase (HAD superfamily); HAD family hydrolase complement(415048..415734) Alkalilimnicola ehrlichii MLHE-1 4268960 YP_741215.1 CDS nudE NC_008340.1 415782 416381 D ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 415782..416381 Alkalilimnicola ehrlichii MLHE-1 4268961 YP_741216.1 CDS Mlg_0371 NC_008340.1 416394 417188 R PFAM: thymidylate synthase; KEGG: pae:PA0342 thymidylate synthase; thymidylate synthase complement(416394..417188) Alkalilimnicola ehrlichii MLHE-1 4268962 YP_741217.1 CDS Mlg_0372 NC_008340.1 417267 418118 R KEGG: tbr:Tb927.4.5120 hypothetical protein; hypothetical protein complement(417267..418118) Alkalilimnicola ehrlichii MLHE-1 4268963 YP_741218.1 CDS glyA NC_008340.1 418391 419650 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 418391..419650 Alkalilimnicola ehrlichii MLHE-1 4268998 YP_741219.1 CDS nrdR NC_008340.1 419660 420115 D TIGRFAM: Ribonucleotide reductase regulator NrdR-like; PFAM: ATP-cone domain protein; KEGG: noc:Noc_2026 protein of unknown function DUF193; transcriptional regulator NrdR 419660..420115 Alkalilimnicola ehrlichii MLHE-1 4268999 YP_741220.1 CDS Mlg_0375 NC_008340.1 420126 421235 D KEGG: dar:Daro_0605 riboflavin biosynthesis protein RibD:riboflavin-specific deaminase, C-terminal; TIGRFAM: riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase-like; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 420126..421235 Alkalilimnicola ehrlichii MLHE-1 4269000 YP_741221.1 CDS Mlg_0376 NC_008340.1 421267 421932 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 421267..421932 Alkalilimnicola ehrlichii MLHE-1 4269001 YP_741222.1 CDS Mlg_0377 NC_008340.1 421933 423048 D PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: noc:Noc_2023 GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 421933..423048 Alkalilimnicola ehrlichii MLHE-1 4269002 YP_741223.1 CDS ribH NC_008340.1 423061 423531 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 423061..423531 Alkalilimnicola ehrlichii MLHE-1 4269003 YP_741224.1 CDS Mlg_0379 NC_008340.1 423528 424064 D TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: noc:Noc_0803 NusB antitermination factor; NusB antitermination factor 423528..424064 Alkalilimnicola ehrlichii MLHE-1 4269004 YP_741225.1 CDS Mlg_0380 NC_008340.1 424206 425171 D KEGG: son:SO3464 thiamin-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase 424206..425171 Alkalilimnicola ehrlichii MLHE-1 4269005 YP_741226.1 CDS Mlg_0381 NC_008340.1 425209 425850 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: lma:LmjF28.2160 hypothetical protein, conserved; type 11 methyltransferase 425209..425850 Alkalilimnicola ehrlichii MLHE-1 4269006 YP_741227.1 CDS Mlg_0383 NC_008340.1 426494 428578 R TIGRFAM: integron integrase; PFAM: phage integrase; transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2; integron integrase complement(426494..428578) Alkalilimnicola ehrlichii MLHE-1 4269008 YP_741228.1 CDS Mlg_0384 NC_008340.1 429799 430680 D KEGG: dps:DP0242 hypothetical protein; hypothetical protein 429799..430680 Alkalilimnicola ehrlichii MLHE-1 4269009 YP_741229.1 CDS Mlg_0385 NC_008340.1 430658 431233 D KEGG: tdn:Tmden_0946 hypothetical protein; hypothetical protein 430658..431233 Alkalilimnicola ehrlichii MLHE-1 4269010 YP_741230.1 CDS Mlg_0386 NC_008340.1 431326 432441 D KEGG: ilo:IL0647 hypothetical protein; hypothetical protein 431326..432441 Alkalilimnicola ehrlichii MLHE-1 4269011 YP_741231.1 CDS Mlg_0387 NC_008340.1 432605 432925 R hypothetical protein complement(432605..432925) Alkalilimnicola ehrlichii MLHE-1 4269012 YP_741232.1 CDS Mlg_0388 NC_008340.1 433162 433671 D KEGG: ilo:IL1489 hypothetical protein; hypothetical protein 433162..433671 Alkalilimnicola ehrlichii MLHE-1 4269013 YP_741233.1 CDS Mlg_0389 NC_008340.1 433704 435392 D PFAM: transposase, IS4 family protein; KEGG: eba:ebA575 transposase, IS4 family; transposase, IS4 family protein 433704..435392 Alkalilimnicola ehrlichii MLHE-1 4269014 YP_741234.1 CDS Mlg_0390 NC_008340.1 435748 436227 D PFAM: phosphatidylglycerophosphatase A; KEGG: son:SO3463 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase 435748..436227 Alkalilimnicola ehrlichii MLHE-1 4269015 YP_741235.1 CDS Mlg_0391 NC_008340.1 436231 438051 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: nmu:Nmul_A0682 ABC transporter related; ABC transporter-like protein 436231..438051 Alkalilimnicola ehrlichii MLHE-1 4269969 YP_741236.1 CDS Mlg_0392 NC_008340.1 438141 439049 R PFAM: Phytanoyl-CoA dioxygenase; KEGG: bcl:ABC3489 L-proline 4-hydroxylase; phytanoyl-CoA dioxygenase complement(438141..439049) Alkalilimnicola ehrlichii MLHE-1 4269970 YP_741237.1 CDS Mlg_0393 NC_008340.1 439279 439620 R hypothetical protein complement(439279..439620) Alkalilimnicola ehrlichii MLHE-1 4269971 YP_741238.1 CDS Mlg_0394 NC_008340.1 439658 441184 D KEGG: mca:MCA1459 tRNA-i(6)A37 modification enzyme MiaB; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; protein of unknown function UPF0004; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; tRNA-i(6)A37 thiotransferase MiaB 439658..441184 Alkalilimnicola ehrlichii MLHE-1 4269972 YP_741239.1 CDS Mlg_0395 NC_008340.1 441303 442334 D PFAM: PhoH family protein; KEGG: noc:Noc_0238 PhoH-like protein; PhoH family protein 441303..442334 Alkalilimnicola ehrlichii MLHE-1 4269973 YP_741240.1 CDS Mlg_0396 NC_008340.1 442315 442815 D PFAM: protein of unknown function UPF0054; KEGG: xac:XAC2464 hypothetical protein; hypothetical protein 442315..442815 Alkalilimnicola ehrlichii MLHE-1 4269974 YP_741241.1 CDS Mlg_0397 NC_008340.1 442897 443772 D PFAM: CBS domain containing protein; transporter-associated region; KEGG: noc:Noc_0240 Mg2+ and Co2+ transporter CorC; CBS domain-containing protein 442897..443772 Alkalilimnicola ehrlichii MLHE-1 4269975 YP_741242.1 CDS Mlg_0398 NC_008340.1 443775 445292 D TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: noc:Noc_0241 apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 443775..445292 Alkalilimnicola ehrlichii MLHE-1 4269976 YP_741243.1 CDS Mlg_0399 NC_008340.1 445336 445887 R PFAM: protein of unknown function DUF1451; KEGG: noc:Noc_2600 conserved hypothetical protein YbeL; hypothetical protein complement(445336..445887) Alkalilimnicola ehrlichii MLHE-1 4269977 YP_741244.1 CDS leuS NC_008340.1 446060 448654 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 446060..448654 Alkalilimnicola ehrlichii MLHE-1 4269978 YP_741245.1 CDS Mlg_0401 NC_008340.1 448712 449251 D KEGG: dar:Daro_0543 rare lipoprotein B; rare lipoprotein B-like protein 448712..449251 Alkalilimnicola ehrlichii MLHE-1 4269979 YP_741246.1 CDS Mlg_0402 NC_008340.1 449254 450270 D KEGG: pst:PSPTO4814 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III subunit delta 449254..450270 Alkalilimnicola ehrlichii MLHE-1 4269980 YP_741247.1 CDS proA NC_008340.1 450344 451606 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 450344..451606 Alkalilimnicola ehrlichii MLHE-1 4269981 YP_741248.1 CDS Mlg_0404 NC_008340.1 451614 452288 D KEGG: noc:Noc_2661 nicotinic acid mononucleotide adenyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate-nucleotide adenylyltransferase 451614..452288 Alkalilimnicola ehrlichii MLHE-1 4269982 YP_741249.1 CDS Mlg_0405 NC_008340.1 452301 452672 D TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: csa:Csal_1543 iojap-related protein; iojap-like protein 452301..452672 Alkalilimnicola ehrlichii MLHE-1 4269983 YP_741250.1 CDS Mlg_0406 NC_008340.1 452676 453143 D PFAM: protein of unknown function DUF163; KEGG: hin:HI0033 hypothetical protein; hypothetical protein 452676..453143 Alkalilimnicola ehrlichii MLHE-1 4269984 YP_741251.1 CDS Mlg_0407 NC_008340.1 453305 453790 D TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pae:PA1673 hemerythrin; hypothetical protein 453305..453790 Alkalilimnicola ehrlichii MLHE-1 4269985 YP_741252.1 CDS Mlg_0408 NC_008340.1 453830 454438 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: sde:Sde_3189 inhibitor of septum formation; maf protein 453830..454438 Alkalilimnicola ehrlichii MLHE-1 4269447 YP_741253.1 CDS Mlg_0409 NC_008340.1 454441 455919 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: noc:Noc_2657 ribonuclease E and G; ribonuclease G 454441..455919 Alkalilimnicola ehrlichii MLHE-1 4269448 YP_741254.1 CDS Mlg_0410 NC_008340.1 455950 459879 D TIGRFAM: conserved hypothetical protein; KEGG: noc:Noc_2656 conserved hypothetical protein 2099; hypothetical protein 455950..459879 Alkalilimnicola ehrlichii MLHE-1 4269449 YP_741255.1 CDS Mlg_0411 NC_008340.1 459904 460731 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mca:MCA0381 hydrolase, carbon-nitrogen family; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 459904..460731 Alkalilimnicola ehrlichii MLHE-1 4269450 YP_741256.1 CDS Mlg_0412 NC_008340.1 460775 462226 D PFAM: peptidase U62, modulator of DNA gyrase; KEGG: mca:MCA0382 TldD protein; microcin-processing peptidase 2 460775..462226 Alkalilimnicola ehrlichii MLHE-1 4269451 YP_741257.1 CDS Mlg_0413 NC_008340.1 462504 463862 D PFAM: peptidase U62, modulator of DNA gyrase; KEGG: mca:MCA0383 PmbA protein; microcin-processing peptidase 1 462504..463862 Alkalilimnicola ehrlichii MLHE-1 4269452 YP_741258.1 CDS Mlg_0414 NC_008340.1 463930 464244 R KEGG: rfr:Rfer_2154 ribosomal subunit interface protein; ribosomal subunit interface protein complement(463930..464244) Alkalilimnicola ehrlichii MLHE-1 4269453 YP_741259.1 CDS Mlg_0415 NC_008340.1 464324 465589 R PFAM: FAD dependent oxidoreductase; KEGG: mag:amb2799 glycine/D-amino acid oxidase; D-amino acid dehydrogenase small subunit complement(464324..465589) Alkalilimnicola ehrlichii MLHE-1 4269454 YP_741260.1 CDS Mlg_0416 NC_008340.1 465925 466653 R PFAM: protein of unknown function DUF81; KEGG: vfi:VF1119 hypothetical protein; hypothetical protein complement(465925..466653) Alkalilimnicola ehrlichii MLHE-1 4269455 YP_741261.1 CDS Mlg_0417 NC_008340.1 466704 467834 R PFAM: NHL repeat containing protein; glucose sorbosone dehydrogenase; KEGG: cya:CYA_2304 glucose/sorbosone dehydrogenase; glucose sorbosone dehydrogenase complement(466704..467834) Alkalilimnicola ehrlichii MLHE-1 4269456 YP_741262.1 CDS Mlg_0418 NC_008340.1 468155 470008 R KEGG: pae:PA0353 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxyacid dehydratase complement(468155..470008) Alkalilimnicola ehrlichii MLHE-1 4269457 YP_741263.1 CDS Mlg_0419 NC_008340.1 470432 471001 R TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: mfa:Mfla_0623 hypothetical protein; ATP:cob(I)alamin adenosyltransferase complement(470432..471001) Alkalilimnicola ehrlichii MLHE-1 4269458 YP_741264.1 CDS Mlg_0420 NC_008340.1 471078 471770 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: vpa:VP0112 methyltransferase-related protein; type 12 methyltransferase 471078..471770 Alkalilimnicola ehrlichii MLHE-1 4269459 YP_741265.1 CDS Mlg_0421 NC_008340.1 471791 472150 R KEGG: sil:SPO2248 DnaK suppressor protein; TraR/DksA family transcriptional regulator complement(471791..472150) Alkalilimnicola ehrlichii MLHE-1 4269460 YP_741266.1 CDS Mlg_0422 NC_008340.1 472204 472737 D PFAM: Appr-1-p processing domain protein; KEGG: sru:SRU_0547 Appr-1-p processing enzyme family protein; appr-1-p processing domain-containing protein 472204..472737 Alkalilimnicola ehrlichii MLHE-1 4269461 YP_741267.1 CDS Mlg_0423 NC_008340.1 473184 473684 R PFAM: dihydrofolate reductase region; KEGG: bmb:BruAb1_1393 FolA, dihydrofolate reductase; dihydrofolate reductase complement(473184..473684) Alkalilimnicola ehrlichii MLHE-1 4269462 YP_741268.1 CDS Mlg_0424 NC_008340.1 473707 474429 R PFAM: LrgB family protein; KEGG: csa:Csal_1794 LrgB-like protein; LrgB family protein complement(473707..474429) Alkalilimnicola ehrlichii MLHE-1 4269463 YP_741269.1 CDS Mlg_0425 NC_008340.1 474419 474769 R PFAM: LrgA family protein; KEGG: csa:Csal_1793 LrgA; LrgA family protein complement(474419..474769) Alkalilimnicola ehrlichii MLHE-1 4269464 YP_741270.1 CDS Mlg_0426 NC_008340.1 474774 475469 R TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: csa:Csal_2578 HAD-superfamily subfamily IB, PSPase-like protein; HAD family hydrolase complement(474774..475469) Alkalilimnicola ehrlichii MLHE-1 4268279 YP_741271.1 CDS Mlg_0427 NC_008340.1 475602 476147 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 475602..476147 Alkalilimnicola ehrlichii MLHE-1 4268280 YP_741272.1 CDS Mlg_0428 NC_008340.1 476165 478429 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; KEGG: ppu:PP5145 phosphoenolpyruvate-protein phosphotransferase PtsP; phosphoenolpyruvate-protein phosphotransferase PtsP 476165..478429 Alkalilimnicola ehrlichii MLHE-1 4268281 YP_741273.1 CDS Mlg_0429 NC_008340.1 478509 478709 D PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: aci:ACIAD3328 regulatory or redox component complexing with Bfr, in iron storage and mobility (Bfd); BFD/(2Fe-2S)-binding domain-containing protein 478509..478709 Alkalilimnicola ehrlichii MLHE-1 4268282 YP_741274.1 CDS Mlg_0430 NC_008340.1 478818 479282 D TIGRFAM: bacterioferritin; PFAM: Ferritin, Dps family protein; KEGG: cvi:CV3399 bacterioferritin; bacterioferritin 478818..479282 Alkalilimnicola ehrlichii MLHE-1 4268283 YP_741275.1 CDS Mlg_0431 NC_008340.1 479397 479819 R PFAM: conserved hypothetical protein 701; KEGG: noc:Noc_0228 conserved hypothetical protein 701; hypothetical protein complement(479397..479819) Alkalilimnicola ehrlichii MLHE-1 4268284 YP_741276.1 CDS Mlg_0432 NC_008340.1 479822 480331 R PFAM: Redoxin domain protein; KEGG: tbd:Tbd_2431 thioredoxin; redoxin domain-containing protein complement(479822..480331) Alkalilimnicola ehrlichii MLHE-1 4268285 YP_741277.1 CDS Mlg_0433 NC_008340.1 480399 482126 R PFAM: Cl- channel, voltage-gated family protein; KEGG: noc:Noc_0358 Cl-channel, voltage gated; Cl- channel, voltage-gated family protein complement(480399..482126) Alkalilimnicola ehrlichii MLHE-1 4268286 YP_741278.1 CDS Mlg_0434 NC_008340.1 482201 483232 D KEGG: hch:HCH_06245 N-acetyl-gamma-glutamyl-phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; N-acetyl-gamma-glutamyl-phosphate reductase 482201..483232 Alkalilimnicola ehrlichii MLHE-1 4268287 YP_741279.1 CDS Mlg_0435 NC_008340.1 483341 483709 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 483341..483709 Alkalilimnicola ehrlichii MLHE-1 4268288 YP_741280.1 CDS anmK NC_008340.1 483803 484954 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(483803..484954) Alkalilimnicola ehrlichii MLHE-1 4268289 YP_741281.1 CDS Mlg_0437 NC_008340.1 484951 486492 R PFAM: peptidase M23B; KEGG: pae:PA0667 hypothetical protein; peptidase M23B complement(484951..486492) Alkalilimnicola ehrlichii MLHE-1 4268290 YP_741282.1 CDS Mlg_0438 NC_008340.1 486713 487912 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 486713..487912 Alkalilimnicola ehrlichii MLHE-1 4268291 YP_741283.1 CDS Mlg_0439 NC_008340.1 493783 495084 D catalyzes the removal of amino acids from the N termini of peptides; aminopeptidase 2 493783..495084 Alkalilimnicola ehrlichii MLHE-1 4270383 YP_741284.1 CDS Mlg_0440 NC_008340.1 495081 496091 D TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11 domain protein; KEGG: xcb:XC_4026 biotin acetyl-CoA-carboxylase synthetase; biotin--acetyl-CoA-carboxylase ligase 495081..496091 Alkalilimnicola ehrlichii MLHE-1 4270384 YP_741285.1 CDS Mlg_0441 NC_008340.1 496048 496818 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 496048..496818 Alkalilimnicola ehrlichii MLHE-1 4270385 YP_741286.1 CDS Mlg_0442 NC_008340.1 496815 497441 D hypothetical protein 496815..497441 Alkalilimnicola ehrlichii MLHE-1 4270386 YP_741287.1 CDS Mlg_0443 NC_008340.1 497581 499365 R TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: mag:amb3725 poly(3-hydroxyalkanoate) synthetase; poly(R)-hydroxyalkanoic acid synthase, class I complement(497581..499365) Alkalilimnicola ehrlichii MLHE-1 4270388 YP_741288.1 CDS Mlg_0444 NC_008340.1 499981 501171 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 499981..501171 Alkalilimnicola ehrlichii MLHE-1 4270791 YP_741289.1 CDS secE NC_008340.1 501361 501738 D forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 501361..501738 Alkalilimnicola ehrlichii MLHE-1 4270793 YP_741290.1 CDS Mlg_0446 NC_008340.1 501742 502275 D KEGG: noc:Noc_2336 transcription antitermination protein NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein; transcription antitermination protein NusG 501742..502275 Alkalilimnicola ehrlichii MLHE-1 4270794 YP_741291.1 CDS Mlg_0447 NC_008340.1 502356 502787 D PFAM: ribosomal protein L11; KEGG: csa:Csal_0410 ribosomal protein L11; 50S ribosomal protein L17 502356..502787 Alkalilimnicola ehrlichii MLHE-1 4270795 YP_741292.1 CDS Mlg_0448 NC_008340.1 502789 503484 D PFAM: ribosomal protein L1; KEGG: noc:Noc_2334 ribosomal protein L1; 50S ribosomal protein L1 502789..503484 Alkalilimnicola ehrlichii MLHE-1 4270796 YP_741293.1 CDS rplJ NC_008340.1 503768 504295 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 503768..504295 Alkalilimnicola ehrlichii MLHE-1 4270797 YP_741294.1 CDS rplL NC_008340.1 504377 504754 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 504377..504754 Alkalilimnicola ehrlichii MLHE-1 4270798 YP_741295.1 CDS rpoB NC_008340.1 504991 509058 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 504991..509058 Alkalilimnicola ehrlichii MLHE-1 4270799 YP_741296.1 CDS Mlg_0452 NC_008340.1 509112 513392 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 509112..513392 Alkalilimnicola ehrlichii MLHE-1 4270800 YP_741297.1 CDS rpsL NC_008340.1 513528 513902 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 513528..513902 Alkalilimnicola ehrlichii MLHE-1 4270801 YP_741298.1 CDS Mlg_0454 NC_008340.1 513952 514422 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 513952..514422 Alkalilimnicola ehrlichii MLHE-1 4270802 YP_741299.1 CDS Mlg_0455 NC_008340.1 514447 516546 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 514447..516546 Alkalilimnicola ehrlichii MLHE-1 4270803 YP_741300.1 CDS Mlg_0456 NC_008340.1 516615 517805 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 516615..517805 Alkalilimnicola ehrlichii MLHE-1 4270804 YP_741301.1 CDS rpsJ NC_008340.1 517810 518121 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 517810..518121 Alkalilimnicola ehrlichii MLHE-1 4270805 YP_741302.1 CDS Mlg_0458 NC_008340.1 518196 518852 D PFAM: ribosomal protein L3; KEGG: ssn:SSO_3461 50S ribosomal subunit protein L3; 50S ribosomal protein L3P 518196..518852 Alkalilimnicola ehrlichii MLHE-1 4270392 YP_741303.1 CDS rplD NC_008340.1 518852 519469 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 518852..519469 Alkalilimnicola ehrlichii MLHE-1 4270393 YP_741304.1 CDS Mlg_0460 NC_008340.1 519466 519765 D PFAM: Ribosomal protein L25/L23; KEGG: pha:PSHAa0146 50S ribosomal protein L23; 50S ribosomal protein L23 519466..519765 Alkalilimnicola ehrlichii MLHE-1 4270394 YP_741305.1 CDS rplB NC_008340.1 519814 520638 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 519814..520638 Alkalilimnicola ehrlichii MLHE-1 4270395 YP_741306.1 CDS Mlg_0462 NC_008340.1 520661 520933 D TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: pae:PA4259 30S ribosomal protein S19; 30S ribosomal protein S19 520661..520933 Alkalilimnicola ehrlichii MLHE-1 4270396 YP_741307.1 CDS rplV NC_008340.1 520943 521278 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 520943..521278 Alkalilimnicola ehrlichii MLHE-1 4270397 YP_741308.1 CDS rpsC NC_008340.1 521291 521971 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 521291..521971 Alkalilimnicola ehrlichii MLHE-1 4270398 YP_741309.1 CDS rplP NC_008340.1 521976 522389 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 521976..522389 Alkalilimnicola ehrlichii MLHE-1 4270399 YP_741310.1 CDS Mlg_0466 NC_008340.1 522389 522586 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 522389..522586 Alkalilimnicola ehrlichii MLHE-1 4270400 YP_741311.1 CDS Mlg_0467 NC_008340.1 522586 522849 D PFAM: ribosomal protein S17; KEGG: ppu:PP0463 ribosomal protein S17; 30S ribosomal protein S17 522586..522849 Alkalilimnicola ehrlichii MLHE-1 4270401 YP_741312.1 CDS Mlg_0468 NC_008340.1 522910 523278 D TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: dar:Daro_0329 ribosomal protein L14, bacterial and organelle form; 50S ribosomal protein L14 522910..523278 Alkalilimnicola ehrlichii MLHE-1 4270402 YP_741313.1 CDS rplX NC_008340.1 523289 523609 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 523289..523609 Alkalilimnicola ehrlichii MLHE-1 4270403 YP_741314.1 CDS rplE NC_008340.1 523619 524158 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 523619..524158 Alkalilimnicola ehrlichii MLHE-1 4270404 YP_741315.1 CDS Mlg_0471 NC_008340.1 524181 524486 D PFAM: ribosomal protein S14; KEGG: csa:Csal_0434 ribosomal protein S14; 30S ribosomal protein S14 524181..524486 Alkalilimnicola ehrlichii MLHE-1 4270405 YP_741316.1 CDS rpsH NC_008340.1 524522 524917 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 524522..524917 Alkalilimnicola ehrlichii MLHE-1 4270406 YP_741317.1 CDS rplF NC_008340.1 524931 525464 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 524931..525464 Alkalilimnicola ehrlichii MLHE-1 4270407 YP_741318.1 CDS rplR NC_008340.1 525479 525832 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 525479..525832 Alkalilimnicola ehrlichii MLHE-1 4270408 YP_741319.1 CDS rpsE NC_008340.1 525848 526348 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 525848..526348 Alkalilimnicola ehrlichii MLHE-1 4270409 YP_741320.1 CDS Mlg_0476 NC_008340.1 526351 526539 D PFAM: ribosomal protein L30; KEGG: tcx:Tcr_0313 ribosomal protein L30; 50S ribosomal protein L30 526351..526539 Alkalilimnicola ehrlichii MLHE-1 4268344 YP_741321.1 CDS rplO NC_008340.1 526541 526975 D late assembly protein; 50S ribosomal protein L15 526541..526975 Alkalilimnicola ehrlichii MLHE-1 4268345 YP_741322.1 CDS secY NC_008340.1 526976 528319 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 526976..528319 Alkalilimnicola ehrlichii MLHE-1 4268346 YP_741323.1 CDS Mlg_0479 NC_008340.1 528433 528546 D PFAM: ribosomal protein L36; KEGG: ilo:IL1895 ribosomal protein L36; 50S ribosomal protein L36 528433..528546 Alkalilimnicola ehrlichii MLHE-1 4268347 YP_741324.1 CDS rpsM NC_008340.1 528626 528985 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 528626..528985 Alkalilimnicola ehrlichii MLHE-1 4268348 YP_741325.1 CDS Mlg_0481 NC_008340.1 529057 529449 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 529057..529449 Alkalilimnicola ehrlichii MLHE-1 4268349 YP_741326.1 CDS Mlg_0482 NC_008340.1 529465 530085 D PFAM: ribosomal protein S4; RNA-binding S4 domain protein; KEGG: csa:Csal_0445 ribosomal protein S4; 30S ribosomal protein S4 529465..530085 Alkalilimnicola ehrlichii MLHE-1 4268350 YP_741327.1 CDS Mlg_0483 NC_008340.1 530140 531135 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 530140..531135 Alkalilimnicola ehrlichii MLHE-1 4268351 YP_741328.1 CDS Mlg_0484 NC_008340.1 531173 531586 D PFAM: ribosomal protein L17; KEGG: ilo:IL1890 ribosomal protein L17; 50S ribosomal protein L17 531173..531586 Alkalilimnicola ehrlichii MLHE-1 4268352 YP_741329.1 CDS Mlg_0485 NC_008340.1 531666 532430 D PFAM: protein of unknown function DUF62; KEGG: rru:Rru_A1812 protein of unknown function DUF62; hypothetical protein 531666..532430 Alkalilimnicola ehrlichii MLHE-1 4268353 YP_741330.1 CDS Mlg_0486 NC_008340.1 532427 532672 D KEGG: mag:amb4558 hypothetical protein; hypothetical protein 532427..532672 Alkalilimnicola ehrlichii MLHE-1 4268354 YP_741331.1 CDS Mlg_0487 NC_008340.1 532854 533834 D catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 532854..533834 Alkalilimnicola ehrlichii MLHE-1 4268355 YP_741332.1 CDS Mlg_0488 NC_008340.1 533957 534568 R PFAM: lipolytic enzyme, G-D-S-L family; KEGG: pca:Pcar_0430 lipase; GDSL family lipase complement(533957..534568) Alkalilimnicola ehrlichii MLHE-1 4268356 YP_741333.1 CDS Mlg_0489 NC_008340.1 534659 535825 D PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: bur:Bcep18194_B3173 tartrate dehydrogenase; 3-isopropylmalate dehydrogenase 534659..535825 Alkalilimnicola ehrlichii MLHE-1 4268357 YP_741334.1 CDS Mlg_0490 NC_008340.1 535850 537241 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: son:SO0541 metallo-beta-lactamase; beta-lactamase domain-containing protein 535850..537241 Alkalilimnicola ehrlichii MLHE-1 4268358 YP_741335.1 CDS Mlg_0491 NC_008340.1 537341 538624 D PFAM: aminotransferase class-III; KEGG: sco:SCO7034 aminotransferase (fragment); aminotransferase 537341..538624 Alkalilimnicola ehrlichii MLHE-1 4268359 YP_741336.1 CDS Mlg_0492 NC_008340.1 538743 539441 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: noc:Noc_0914 phosphatidylethanolamine N-methyltransferase; phosphatidyl-N-methylethanolamine N-methyltransferase/phosphatidylethanolamine N-methyltransferase 538743..539441 Alkalilimnicola ehrlichii MLHE-1 4268360 YP_741337.1 CDS Mlg_0493 NC_008340.1 539872 540312 D TIGRFAM: conserved hypothetical protein; KEGG: mlo:mlr9078 hypothetical protein; hypothetical protein 539872..540312 Alkalilimnicola ehrlichii MLHE-1 4268429 YP_741338.1 CDS Mlg_0494 NC_008340.1 540312 540794 D KEGG: mlo:mlr9079 hypothetical protein; hypothetical protein 540312..540794 Alkalilimnicola ehrlichii MLHE-1 4268430 YP_741339.1 CDS Mlg_0495 NC_008340.1 541599 543080 D PFAM: outer membrane efflux protein; KEGG: bur:Bcep18194_B2765 outer membrane efflux protein; outer membrane efflux protein 541599..543080 Alkalilimnicola ehrlichii MLHE-1 4268431 YP_741340.1 CDS Mlg_0496 NC_008340.1 543080 544483 D PFAM: multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG: bur:Bcep18194_B2764 multicopper oxidase, type 3; multicopper oxidase, type 3 543080..544483 Alkalilimnicola ehrlichii MLHE-1 4268432 YP_741341.1 CDS Mlg_0497 NC_008340.1 544568 544930 D PFAM: copper resistance protein CopC; KEGG: ilo:IL1233 copper resistance protein; copper resistance protein CopC 544568..544930 Alkalilimnicola ehrlichii MLHE-1 4268433 YP_741342.1 CDS Mlg_0498 NC_008340.1 544934 545836 D PFAM: copper resistance D domain protein; KEGG: pha:PSHAb0008 copper export protein; copper resistance D domain-containing protein 544934..545836 Alkalilimnicola ehrlichii MLHE-1 4268434 YP_741343.1 CDS Mlg_0499 NC_008340.1 545904 548330 D TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: cef:CE0257 restriction enzyme subunit M; type I restriction-modification system, M subunit 545904..548330 Alkalilimnicola ehrlichii MLHE-1 4268435 YP_741344.1 CDS Mlg_0500 NC_008340.1 548323 549564 D PFAM: restriction modification system DNA specificity domain; KEGG: mth:MTH941 type I restriction modification system, subunit S; restriction modification system DNA specificity subunit 548323..549564 Alkalilimnicola ehrlichii MLHE-1 4268436 YP_741345.1 CDS Mlg_0501 NC_008340.1 549610 549792 D KEGG: mhu:Mhun_2961 protein of unknown function DUF262; hypothetical protein 549610..549792 Alkalilimnicola ehrlichii MLHE-1 4268437 YP_741346.1 CDS Mlg_0502 NC_008340.1 549808 550098 D KEGG: ilo:IL1614 hypothetical protein; hypothetical protein 549808..550098 Alkalilimnicola ehrlichii MLHE-1 4268438 YP_741347.1 CDS Mlg_0503 NC_008340.1 550095 551183 D PFAM: Appr-1-p processing domain protein; KEGG: ppu:PP5129 hypothetical protein; appr-1-p processing domain-containing protein 550095..551183 Alkalilimnicola ehrlichii MLHE-1 4268439 YP_741348.1 CDS Mlg_0504 NC_008340.1 551304 554639 D KEGG: cef:CE0259 hypothetical protein; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD/DEAH box helicase domain protein; HsdR family type I site-specific deoxyribonuclease 551304..554639 Alkalilimnicola ehrlichii MLHE-1 4268440 YP_741349.1 CDS Mlg_0505 NC_008340.1 554636 555337 D PFAM: protein of unknown function DUF45; KEGG: fra:Francci3_4010 protein of unknown function DUF45; hypothetical protein 554636..555337 Alkalilimnicola ehrlichii MLHE-1 4268441 YP_741350.1 CDS Mlg_0506 NC_008340.1 555419 555640 D KEGG: psb:Psyr_3725 ATPas; hypothetical protein 555419..555640 Alkalilimnicola ehrlichii MLHE-1 4268442 YP_741351.1 CDS Mlg_0507 NC_008340.1 555748 556749 D hypothetical protein 555748..556749 Alkalilimnicola ehrlichii MLHE-1 4268443 YP_741352.1 CDS Mlg_0508 NC_008340.1 556746 557474 D KEGG: eba:ebA5435 conserved hypothetical protein, probable DNA/RNA helicase; hypothetical protein 556746..557474 Alkalilimnicola ehrlichii MLHE-1 4268444 YP_741353.1 CDS Mlg_0509 NC_008340.1 557553 558716 R PFAM: filamentation induced by cAMP protein Fic; KEGG: mca:MCA0835 fic family protein; Fic family protein complement(557553..558716) Alkalilimnicola ehrlichii MLHE-1 4268861 YP_741354.1 CDS Mlg_0510 NC_008340.1 558866 559288 R hypothetical protein complement(558866..559288) Alkalilimnicola ehrlichii MLHE-1 4268862 YP_741355.1 CDS Mlg_0511 NC_008340.1 559417 560229 R PFAM: Redoxin domain protein; KEGG: csa:Csal_2593 thiol:disulfide interchange protein; redoxin domain-containing protein complement(559417..560229) Alkalilimnicola ehrlichii MLHE-1 4268863 YP_741356.1 CDS Mlg_0512 NC_008340.1 560339 560887 D TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; KEGG: mca:MCA0386 2'-5' RNA ligase; 2'-5' RNA ligase 560339..560887 Alkalilimnicola ehrlichii MLHE-1 4268864 YP_741357.1 CDS Mlg_0513 NC_008340.1 561021 561485 D PFAM: protein of unknown function DUF336; KEGG: bmb:BruAb1_1757 hypothetical protein; hypothetical protein 561021..561485 Alkalilimnicola ehrlichii MLHE-1 4268865 YP_741358.1 CDS Mlg_0514 NC_008340.1 561532 562266 R KEGG: pfo:Pfl_1631 hypothetical protein; hypothetical protein complement(561532..562266) Alkalilimnicola ehrlichii MLHE-1 4268866 YP_741359.1 CDS purN NC_008340.1 562304 562984 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(562304..562984) Alkalilimnicola ehrlichii MLHE-1 4268867 YP_741360.1 CDS Mlg_0516 NC_008340.1 562981 564024 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(562981..564024) Alkalilimnicola ehrlichii MLHE-1 4268868 YP_741361.1 CDS Mlg_0517 NC_008340.1 564155 565189 D KEGG: hch:HCH_01907 hypothetical protein; hypothetical protein 564155..565189 Alkalilimnicola ehrlichii MLHE-1 4268869 YP_741362.1 CDS Mlg_0518 NC_008340.1 565314 566051 D PFAM: Chromosomal replication initiator, DnaA; KEGG: csa:Csal_2110 chromosomal replication initiator, DnaA; regulatory inactivation of DnaA Hda protein 565314..566051 Alkalilimnicola ehrlichii MLHE-1 4268870 YP_741363.1 CDS Mlg_0519 NC_008340.1 566052 566465 R KEGG: rso:RSc1557 probable transmembrane protein; transmembrane protein complement(566052..566465) Alkalilimnicola ehrlichii MLHE-1 4268871 YP_741364.1 CDS Mlg_0520 NC_008340.1 566459 567013 R KEGG: noc:Noc_0187 flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase complement(566459..567013) Alkalilimnicola ehrlichii MLHE-1 4268872 YP_741365.1 CDS Mlg_0521 NC_008340.1 567190 568527 D TIGRFAM: ribonuclease BN; PFAM: ribonuclease BN; KEGG: lpp:lpp0698 hypothetical protein; ribonuclease BN 567190..568527 Alkalilimnicola ehrlichii MLHE-1 4268873 YP_741366.1 CDS Mlg_0522 NC_008340.1 568524 568793 D PFAM: acylphosphatase; KEGG: hch:HCH_04535 acylphosphatase; acylphosphatase 568524..568793 Alkalilimnicola ehrlichii MLHE-1 4268874 YP_741367.1 CDS Mlg_0523 NC_008340.1 568905 569243 D PFAM: cytochrome c, class I; KEGG: noc:Noc_3050 cytochrome c, class I; cytochrome c, class I 568905..569243 Alkalilimnicola ehrlichii MLHE-1 4268875 YP_741368.1 CDS Mlg_0524 NC_008340.1 569243 569590 D PFAM: cytochrome c, class I; KEGG: noc:Noc_3049 cytochrome c, class I; cytochrome c, class I 569243..569590 Alkalilimnicola ehrlichii MLHE-1 4268876 YP_741369.1 CDS Mlg_0525 NC_008340.1 569674 570330 R PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: aba:Acid345_4330 protein serine/threonine phosphatases; Ser/Thr phosphatase complement(569674..570330) Alkalilimnicola ehrlichii MLHE-1 4268877 YP_741370.1 CDS Mlg_0526 NC_008340.1 570427 571104 R KEGG: dar:Daro_1971 protein of unknown function DUF52; dioxygenase-like protein complement(570427..571104) Alkalilimnicola ehrlichii MLHE-1 4268055 YP_741371.1 CDS Mlg_0527 NC_008340.1 571349 571648 R hypothetical protein complement(571349..571648) Alkalilimnicola ehrlichii MLHE-1 4268056 YP_741372.1 CDS Mlg_0528 NC_008340.1 572039 572590 R PFAM: protein of unknown function DUF59; KEGG: xac:XAC0926 hypothetical protein; hypothetical protein complement(572039..572590) Alkalilimnicola ehrlichii MLHE-1 4268057 YP_741373.1 CDS Mlg_0529 NC_008340.1 572776 573507 D PFAM: glutaredoxin; KEGG: psb:Psyr_2639 hypothetical protein; glutaredoxin 572776..573507 Alkalilimnicola ehrlichii MLHE-1 4268058 YP_741374.1 CDS Mlg_0530 NC_008340.1 573520 574464 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tbd:Tbd_1110 conserved hypothetical protein containing TPR repeat; hypothetical protein complement(573520..574464) Alkalilimnicola ehrlichii MLHE-1 4268059 YP_741375.1 CDS Mlg_0531 NC_008340.1 574464 574889 R KEGG: tcx:Tcr_0270 hypothetical protein; hypothetical protein complement(574464..574889) Alkalilimnicola ehrlichii MLHE-1 4268060 YP_741376.1 CDS Mlg_0532 NC_008340.1 574917 576485 R PFAM: GCN5-related N-acetyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: hch:HCH_04040 predicted amidohydrolase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(574917..576485) Alkalilimnicola ehrlichii MLHE-1 4268061 YP_741377.1 CDS Mlg_0533 NC_008340.1 576720 578396 D PFAM: surface antigen (D15); KEGG: pfo:Pfl_3647 surface antigen (D15); surface antigen (D15) 576720..578396 Alkalilimnicola ehrlichii MLHE-1 4268062 YP_741378.1 CDS Mlg_0534 NC_008340.1 578393 582244 D PFAM: protein of unknown function DUF490; KEGG: spt:SPA4230 hypothetical protein; hypothetical protein 578393..582244 Alkalilimnicola ehrlichii MLHE-1 4268063 YP_741379.1 CDS Mlg_0535 NC_008340.1 582266 583117 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: mfa:Mfla_2045 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(582266..583117) Alkalilimnicola ehrlichii MLHE-1 4268064 YP_741380.1 CDS Mlg_0536 NC_008340.1 583214 583876 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dge:Dgeo_2234 tRNA (guanosine-2'-O-)-methyltransferase; tRNA guanosine-2'-O-methyltransferase 583214..583876 Alkalilimnicola ehrlichii MLHE-1 4268065 YP_741381.1 CDS Mlg_0537 NC_008340.1 584579 584962 R KEGG: ilo:IL2540 hypothetical protein; hypothetical protein complement(584579..584962) Alkalilimnicola ehrlichii MLHE-1 4268066 YP_741382.1 CDS Mlg_0538 NC_008340.1 585108 585692 R PFAM: Lytic transglycosylase, catalytic; KEGG: hch:HCH_04774 soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); lytic transglycosylase catalytic subunit complement(585108..585692) Alkalilimnicola ehrlichii MLHE-1 4268067 YP_741383.1 CDS Mlg_0539 NC_008340.1 585706 587412 R TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: csa:Csal_2139 prolyl-tRNA synthetase; prolyl-tRNA synthetase complement(585706..587412) Alkalilimnicola ehrlichii MLHE-1 4268068 YP_741384.1 CDS Mlg_0540 NC_008340.1 587496 589577 R KEGG: rme:Rmet_6140 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(587496..589577) Alkalilimnicola ehrlichii MLHE-1 4268069 YP_741385.1 CDS Mlg_0541 NC_008340.1 589574 589912 R KEGG: rme:Rmet_6141 hypothetical protein; hypothetical protein complement(589574..589912) Alkalilimnicola ehrlichii MLHE-1 4268070 YP_741386.1 CDS Mlg_0542 NC_008340.1 590079 591404 R KEGG: vvu:VV20031 predicted membrane protein; hypothetical protein complement(590079..591404) Alkalilimnicola ehrlichii MLHE-1 4268071 YP_741387.1 CDS ilvH NC_008340.1 591706 592200 D with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 591706..592200 Alkalilimnicola ehrlichii MLHE-1 4268072 YP_741388.1 CDS Mlg_0544 NC_008340.1 592257 593273 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 592257..593273 Alkalilimnicola ehrlichii MLHE-1 4270299 YP_741389.1 CDS Mlg_0545 NC_008340.1 593526 594587 D hypothetical protein 593526..594587 Alkalilimnicola ehrlichii MLHE-1 4270300 YP_741390.1 CDS Mlg_0546 NC_008340.1 594727 595230 D PFAM: protein of unknown function DUF107; KEGG: tfu:Tfu_2226 integral membrane protein; hypothetical protein 594727..595230 Alkalilimnicola ehrlichii MLHE-1 4270301 YP_741391.1 CDS Mlg_0547 NC_008340.1 595432 595797 D hypothetical protein 595432..595797 Alkalilimnicola ehrlichii MLHE-1 4270302 YP_741392.1 CDS Mlg_0548 NC_008340.1 595957 596163 R hypothetical protein complement(595957..596163) Alkalilimnicola ehrlichii MLHE-1 4270303 YP_741393.1 CDS Mlg_0549 NC_008340.1 596289 597044 D TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: noc:Noc_2517 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 596289..597044 Alkalilimnicola ehrlichii MLHE-1 4270304 YP_741394.1 CDS Mlg_0550 NC_008340.1 597093 598055 R PFAM: peptidase M48, Ste24p; KEGG: noc:Noc_1572 peptidase M48, Ste24p; peptidase M48, Ste24p complement(597093..598055) Alkalilimnicola ehrlichii MLHE-1 4270305 YP_741395.1 CDS Mlg_0551 NC_008340.1 598468 600021 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 598468..600021 Alkalilimnicola ehrlichii MLHE-1 4270306 YP_741396.1 CDS Mlg_0552 NC_008340.1 600026 600820 D TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: rme:Rmet_1397 phage SPO1 DNA polymerase-related protein; phage SPO1 DNA polymerase-like protein 600026..600820 Alkalilimnicola ehrlichii MLHE-1 4270307 YP_741397.1 CDS Mlg_0553 NC_008340.1 600849 601334 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: xcv:XCV3688 acetyltransferase; 30S ribosomal protein S18 600849..601334 Alkalilimnicola ehrlichii MLHE-1 4270308 YP_741398.1 CDS Mlg_0554 NC_008340.1 601324 601530 D KEGG: pfo:Pfl_3109 hypothetical protein; hypothetical protein 601324..601530 Alkalilimnicola ehrlichii MLHE-1 4270309 YP_741399.1 CDS valS NC_008340.1 601592 604345 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(601592..604345) Alkalilimnicola ehrlichii MLHE-1 4270310 YP_741400.1 CDS Mlg_0556 NC_008340.1 604500 605033 R PFAM: GCN5-related N-acetyltransferase; KEGG: reu:Reut_B3997 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(604500..605033) Alkalilimnicola ehrlichii MLHE-1 4270311 YP_741401.1 CDS Mlg_0557 NC_008340.1 605217 605657 R PFAM: DNA polymerase III chi subunit, HolC; KEGG: noc:Noc_0288 DNA polymerase III chi subunit, HolC; DNA polymerase III chi subunit, HolC complement(605217..605657) Alkalilimnicola ehrlichii MLHE-1 4270312 YP_741402.1 CDS Mlg_0558 NC_008340.1 605659 607152 R PFAM: peptidase M17, leucyl aminopeptidase domain protein; KEGG: nmu:Nmul_A0746 leucyl aminopeptidase; PepA aminopeptidase complement(605659..607152) Alkalilimnicola ehrlichii MLHE-1 4270313 YP_741403.1 CDS Mlg_0559 NC_008340.1 607309 608427 D PFAM: permease YjgP/YjgQ family protein; KEGG: hch:HCH_01933 predicted permease; permease YjgP/YjgQ family protein 607309..608427 Alkalilimnicola ehrlichii MLHE-1 4270314 YP_741404.1 CDS Mlg_0560 NC_008340.1 608424 609506 D PFAM: permease YjgP/YjgQ family protein; KEGG: noc:Noc_1909 permease YjgP/YjgQ; permease YjgP/YjgQ family protein 608424..609506 Alkalilimnicola ehrlichii MLHE-1 4270315 YP_741405.1 CDS Mlg_0561 NC_008340.1 609532 610077 R PFAM: RDD domain containing protein; KEGG: tbd:Tbd_1995 transmembrane protein; RDD domain-containing protein complement(609532..610077) Alkalilimnicola ehrlichii MLHE-1 4270890 YP_741406.1 CDS Mlg_0562 NC_008340.1 610197 611636 D TIGRFAM: poly(A) polymerase; PFAM: Polynucleotide adenylyltransferase region; KEGG: mca:MCA2312 polyA polymerase; poly(A) polymerase 610197..611636 Alkalilimnicola ehrlichii MLHE-1 4270892 YP_741407.1 CDS Mlg_0563 NC_008340.1 611671 612174 D KEGG: noc:Noc_0884 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 611671..612174 Alkalilimnicola ehrlichii MLHE-1 4270893 YP_741408.1 CDS panB NC_008340.1 612218 613051 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 612218..613051 Alkalilimnicola ehrlichii MLHE-1 4270894 YP_741409.1 CDS Mlg_0565 NC_008340.1 613048 613908 D KEGG: ppu:PP4700 pantoate--beta-alanine ligase; TIGRFAM: pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantothenate synthetase 613048..613908 Alkalilimnicola ehrlichii MLHE-1 4270895 YP_741410.1 CDS Mlg_0566 NC_008340.1 614033 614413 D Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 614033..614413 Alkalilimnicola ehrlichii MLHE-1 4270896 YP_741411.1 CDS Mlg_0567 NC_008340.1 614779 615834 R TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: pae:PA4950 hypothetical protein; iron-sulfur cluster binding protein complement(614779..615834) Alkalilimnicola ehrlichii MLHE-1 4270897 YP_741412.1 CDS Mlg_0568 NC_008340.1 615878 617356 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; KEGG: noc:Noc_0339 hypothetical protein; carbohydrate kinase 615878..617356 Alkalilimnicola ehrlichii MLHE-1 4270898 YP_741413.1 CDS Mlg_0569 NC_008340.1 617353 617856 D PFAM: protein of unknown function UPF0079; KEGG: sgl:SG0333 hypothetical protein; hypothetical protein 617353..617856 Alkalilimnicola ehrlichii MLHE-1 4270899 YP_741414.1 CDS Mlg_0570 NC_008340.1 617930 619288 D PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: noc:Noc_0337 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase 617930..619288 Alkalilimnicola ehrlichii MLHE-1 4270900 YP_741415.1 CDS Mlg_0571 NC_008340.1 619294 621204 D TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase domain protein domain protein; DNA mismatch repair protein, C-terminal domain protein; KEGG: pae:PA4946 DNA mismatch repair protein MutL; DNA mismatch repair protein MutL 619294..621204 Alkalilimnicola ehrlichii MLHE-1 4270901 YP_741416.1 CDS Mlg_0572 NC_008340.1 621208 622161 D KEGG: pfo:Pfl_0522 tRNA isopentenyltransferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA delta(2)-isopentenylpyrophosphate transferase 621208..622161 Alkalilimnicola ehrlichii MLHE-1 4270902 YP_741417.1 CDS Mlg_0573 NC_008340.1 622297 622566 D TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: xfa:XF0089 host factor-I protein; RNA chaperone Hfq 622297..622566 Alkalilimnicola ehrlichii MLHE-1 4270903 YP_741418.1 CDS Mlg_0574 NC_008340.1 622631 623896 D PFAM: GTP-binding protein, HSR1-related; KEGG: pfo:Pfl_0524 GTP-binding protein, HSR1-like; HSR1-like GTP-binding protein 622631..623896 Alkalilimnicola ehrlichii MLHE-1 4270904 YP_741419.1 CDS Mlg_0575 NC_008340.1 623992 625371 D TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: noc:Noc_2588 HflK-like protein; HflK protein 623992..625371 Alkalilimnicola ehrlichii MLHE-1 4270905 YP_741420.1 CDS Mlg_0576 NC_008340.1 625371 626267 D TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: tcx:Tcr_1091 HflC protein; HflC protein 625371..626267 Alkalilimnicola ehrlichii MLHE-1 4270906 YP_741421.1 CDS Mlg_0577 NC_008340.1 626420 627625 D Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase 626420..627625 Alkalilimnicola ehrlichii MLHE-1 4268310 YP_741422.1 CDS Mlg_0578 NC_008340.1 627695 628993 D catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 627695..628993 Alkalilimnicola ehrlichii MLHE-1 4268311 YP_741423.1 CDS Mlg_0579 NC_008340.1 629080 629544 D PFAM: 17 kDa surface antigen; KEGG: lpp:lpp0805 hypothetical protein; 17 kDa surface antigen 629080..629544 Alkalilimnicola ehrlichii MLHE-1 4268312 YP_741424.1 CDS Mlg_0580 NC_008340.1 629873 632149 D KEGG: mca:MCA1976 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; Ribonuclease R winged-helix domain protein; SMART: Cold shock protein; ribonuclease R 629873..632149 Alkalilimnicola ehrlichii MLHE-1 4268314 YP_741425.1 CDS Mlg_0581 NC_008340.1 632146 632886 D TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: sdn:Sden_0512 RNA methyltransferase TrmH, group 3; RNA methyltransferase 632146..632886 Alkalilimnicola ehrlichii MLHE-1 4268315 YP_741426.1 CDS rpsF NC_008340.1 633028 633387 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 633028..633387 Alkalilimnicola ehrlichii MLHE-1 4268316 YP_741427.1 CDS Mlg_0583 NC_008340.1 633397 633738 D PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pha:PSHAa2441 primosomal replication protein N; restart primosome assembly protein PriB 633397..633738 Alkalilimnicola ehrlichii MLHE-1 4268317 YP_741428.1 CDS rpsR NC_008340.1 633744 633968 D binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 633744..633968 Alkalilimnicola ehrlichii MLHE-1 4268318 YP_741429.1 CDS Mlg_0585 NC_008340.1 633989 634867 D KEGG: pfo:Pfl_0536 hypothetical protein; hypothetical protein 633989..634867 Alkalilimnicola ehrlichii MLHE-1 4268319 YP_741430.1 CDS rplI NC_008340.1 634908 635360 D in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 634908..635360 Alkalilimnicola ehrlichii MLHE-1 4268320 YP_741431.1 CDS Mlg_0587 NC_008340.1 635465 639610 D KEGG: nfa:nfa55760 replicative DNA helicase; TIGRFAM: Protein splicing (intein) site; PFAM: helix-turn-helix domain protein; DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; SMART: Hedgehog/intein hint domain protein; XRE family transcriptional regulator 635465..639610 Alkalilimnicola ehrlichii MLHE-1 4268321 YP_741432.1 CDS Mlg_0588 NC_008340.1 639645 640742 D KEGG: pae:PA5302 catabolic alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 639645..640742 Alkalilimnicola ehrlichii MLHE-1 4268322 YP_741433.1 CDS Mlg_0589 NC_008340.1 640778 642133 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 640778..642133 Alkalilimnicola ehrlichii MLHE-1 4268323 YP_741434.1 CDS Mlg_0590 NC_008340.1 642484 642861 R PFAM: type IV pilus assembly PilZ; KEGG: ade:Adeh_2982 hypothetical protein; type IV pilus assembly PilZ complement(642484..642861) Alkalilimnicola ehrlichii MLHE-1 4268324 YP_741435.1 CDS Mlg_0591 NC_008340.1 642915 643775 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(642915..643775) Alkalilimnicola ehrlichii MLHE-1 4268325 YP_741436.1 CDS Mlg_0592 NC_008340.1 644453 645295 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(644453..645295) Alkalilimnicola ehrlichii MLHE-1 4270371 YP_741437.1 CDS Mlg_0593 NC_008340.1 645765 646871 D PFAM: porin, Gram-negative type; KEGG: tbd:Tbd_0448 outer membrane protein (porin); porin 645765..646871 Alkalilimnicola ehrlichii MLHE-1 4270372 YP_741438.1 CDS Mlg_0594 NC_008340.1 647221 648285 D PFAM: porin, Gram-negative type; KEGG: tbd:Tbd_0448 outer membrane protein (porin); porin 647221..648285 Alkalilimnicola ehrlichii MLHE-1 4270373 YP_741439.1 CDS Mlg_0595 NC_008340.1 648473 648802 R TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; KEGG: ilo:IL1804 glutaredoxin-related protein; glutaredoxin-like protein complement(648473..648802) Alkalilimnicola ehrlichii MLHE-1 4270374 YP_741440.1 CDS engA NC_008340.1 648936 650339 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(648936..650339) Alkalilimnicola ehrlichii MLHE-1 4270375 YP_741441.1 CDS Mlg_0597 NC_008340.1 650401 651432 R catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase complement(650401..651432) Alkalilimnicola ehrlichii MLHE-1 4270376 YP_741442.1 CDS Mlg_0598 NC_008340.1 651478 652329 R PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; cobalamin (vitamin B12) biosynthesis CbiX protein complement(651478..652329) Alkalilimnicola ehrlichii MLHE-1 4270377 YP_741443.1 CDS Mlg_0599 NC_008340.1 652470 652904 D PFAM: protein of unknown function DUF488; KEGG: gme:Gmet_0156 protein of unknown function DUF488; hypothetical protein 652470..652904 Alkalilimnicola ehrlichii MLHE-1 4270378 YP_741444.1 CDS Mlg_0600 NC_008340.1 652932 653420 D PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sme:SMa1195 hypothetical protein; hemerythrin HHE cation binding domain-containing protein 652932..653420 Alkalilimnicola ehrlichii MLHE-1 4270379 YP_741445.1 CDS Mlg_0601 NC_008340.1 653585 654793 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 653585..654793 Alkalilimnicola ehrlichii MLHE-1 4268480 YP_741446.1 CDS Mlg_0602 NC_008340.1 654844 655434 R PFAM: peptidase S16, lon domain protein; KEGG: dar:Daro_0066 peptidase S16, lon N-terminal; peptidase S16, lon domain-containing protein complement(654844..655434) Alkalilimnicola ehrlichii MLHE-1 4268481 YP_741447.1 CDS Mlg_0603 NC_008340.1 655431 656078 R TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: pae:PA4019 probable aromatic acid decarboxylase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(655431..656078) Alkalilimnicola ehrlichii MLHE-1 4268482 YP_741448.1 CDS Mlg_0604 NC_008340.1 656075 657436 R TIGRFAM: UDP-N-acetylmuramate; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: pae:PA4020 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; UDP-N-acetylmuramate complement(656075..657436) Alkalilimnicola ehrlichii MLHE-1 4268483 YP_741449.1 CDS Mlg_0605 NC_008340.1 657465 657971 R KEGG: mca:MCA1366 hypothetical protein; hypothetical protein complement(657465..657971) Alkalilimnicola ehrlichii MLHE-1 4268484 YP_741450.1 CDS Mlg_0606 NC_008340.1 658121 658648 D PFAM: Inorganic pyrophosphatase; KEGG: tbd:Tbd_1652 inorganic pyrophosphatase; inorganic diphosphatase 658121..658648 Alkalilimnicola ehrlichii MLHE-1 4268485 YP_741451.1 CDS Mlg_0607 NC_008340.1 658973 659299 D hypothetical protein 658973..659299 Alkalilimnicola ehrlichii MLHE-1 4268486 YP_741452.1 CDS Mlg_0608 NC_008340.1 659308 660192 D TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; KEGG: pae:PA4850 ribosomal protein L11 methyltransferase; 50S ribosomal protein L20 659308..660192 Alkalilimnicola ehrlichii MLHE-1 4268487 YP_741453.1 CDS Mlg_0609 NC_008340.1 660196 660687 D KEGG: pst:PSPTO4863 hypothetical protein; hypothetical protein 660196..660687 Alkalilimnicola ehrlichii MLHE-1 4268488 YP_741454.1 CDS Mlg_0610 NC_008340.1 660785 661072 D PFAM: helix-turn-helix, Fis-type; KEGG: sgl:SG0150 DNA-binding protein fis; Fis family transcriptional regulator 660785..661072 Alkalilimnicola ehrlichii MLHE-1 4268489 YP_741455.1 CDS Mlg_0611 NC_008340.1 661108 662688 D KEGG: tcx:Tcr_0439 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme; MGS domain protein; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 661108..662688 Alkalilimnicola ehrlichii MLHE-1 4268490 YP_741456.1 CDS Mlg_0612 NC_008340.1 662723 664015 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 662723..664015 Alkalilimnicola ehrlichii MLHE-1 4268491 YP_741457.1 CDS Mlg_0613 NC_008340.1 664134 664652 R TIGRFAM: phasin family protein; KEGG: csa:Csal_2464 hypothetical protein; phasin family protein complement(664134..664652) Alkalilimnicola ehrlichii MLHE-1 4268492 YP_741458.1 CDS Mlg_0614 NC_008340.1 664785 665090 D PFAM: RNP-1 like RNA-binding protein; KEGG: dvu:DVU2215 RNA-binding protein; RNP-1 like RNA-binding protein 664785..665090 Alkalilimnicola ehrlichii MLHE-1 4268493 YP_741459.1 CDS Mlg_0615 NC_008340.1 665129 665506 R PFAM: protein of unknown function DUF583; KEGG: tcx:Tcr_0799 protein of unknown function DUF583; hypothetical protein complement(665129..665506) Alkalilimnicola ehrlichii MLHE-1 4268494 YP_741460.1 CDS Mlg_0616 NC_008340.1 665515 666474 R PFAM: peptidase M23B; KEGG: tcx:Tcr_0798 peptidase M23B; peptidase M23B complement(665515..666474) Alkalilimnicola ehrlichii MLHE-1 4268495 YP_741461.1 CDS Mlg_0617 NC_008340.1 666571 666903 R hypothetical protein complement(666571..666903) Alkalilimnicola ehrlichii MLHE-1 4268496 YP_741462.1 CDS Mlg_0618 NC_008340.1 666976 668883 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU0913 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(666976..668883) Alkalilimnicola ehrlichii MLHE-1 4268497 YP_741463.1 CDS Mlg_0619 NC_008340.1 669015 670322 D KEGG: mag:amb4155 uncharacterized membrane-anchored protein conserved in bacteria; hypothetical protein 669015..670322 Alkalilimnicola ehrlichii MLHE-1 4270601 YP_741464.1 CDS Mlg_0620 NC_008340.1 670333 671757 D PFAM: Fmu (Sun) domain protein; KEGG: hma:rrnAC0628 tRNA and rRNA cytosine-C5-methylase; Fmu (Sun) domain-containing protein 670333..671757 Alkalilimnicola ehrlichii MLHE-1 4270602 YP_741465.1 CDS Mlg_0621 NC_008340.1 671799 672011 R hypothetical protein complement(671799..672011) Alkalilimnicola ehrlichii MLHE-1 4270603 YP_741466.1 CDS Mlg_0622 NC_008340.1 672163 673038 D PFAM: Auxin Efflux Carrier; KEGG: csa:Csal_1038 auxin efflux carrier; auxin efflux carrier 672163..673038 Alkalilimnicola ehrlichii MLHE-1 4270604 YP_741467.1 CDS Mlg_0623 NC_008340.1 673049 673720 R PFAM: protein of unknown function UPF0074; Rhodanese domain protein; regulatory protein, ArsR; KEGG: bur:Bcep18194_B2905 transcriptional regulator, ArsR family; ArsR family transcriptional regulator complement(673049..673720) Alkalilimnicola ehrlichii MLHE-1 4270605 YP_741468.1 CDS Mlg_0624 NC_008340.1 673717 674874 R PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bps:BPSS2121 cysteine desulfurase; class V aminotransferase complement(673717..674874) Alkalilimnicola ehrlichii MLHE-1 4270606 YP_741469.1 CDS Mlg_0625 NC_008340.1 674887 675243 R PFAM: DsrE family protein; KEGG: rfr:Rfer_0463 DsrE-like protein; DsrE family protein complement(674887..675243) Alkalilimnicola ehrlichii MLHE-1 4270607 YP_741470.1 CDS Mlg_0626 NC_008340.1 675413 676087 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gvi:gll2421 hypothetical protein; type 11 methyltransferase 675413..676087 Alkalilimnicola ehrlichii MLHE-1 4270608 YP_741471.1 CDS Mlg_0627 NC_008340.1 676109 677110 D PFAM: Bile acid:sodium symporter; KEGG: gsu:GSU1411 sodium/bile acid symporter family protein; bile acid:sodium symporter 676109..677110 Alkalilimnicola ehrlichii MLHE-1 4270609 YP_741472.1 CDS Mlg_0628 NC_008340.1 677278 678756 D PFAM: KaiC domain protein; SMART: AAA ATPase; KEGG: noc:Noc_1328 KaiC; circadian clock protein, KaiC 677278..678756 Alkalilimnicola ehrlichii MLHE-1 4270610 YP_741473.1 CDS Mlg_0629 NC_008340.1 678753 679163 D KEGG: noc:Noc_1329 response regulator receiver; response regulator receiver protein 678753..679163 Alkalilimnicola ehrlichii MLHE-1 4270611 YP_741474.1 CDS Mlg_0630 NC_008340.1 679147 680904 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: noc:Noc_1330 diguanylate cyclase/phosphodiesterase; response regulator receiver modulated diguanylate cyclase/phosphodiesterase 679147..680904 Alkalilimnicola ehrlichii MLHE-1 4270612 YP_741475.1 CDS Mlg_0631 NC_008340.1 681029 681736 D PFAM: cyclic nucleotide-binding; KEGG: rru:Rru_A1622 transcriptional regulator, Crp/Fnr family; cyclic nucleotide-binding protein 681029..681736 Alkalilimnicola ehrlichii MLHE-1 4270614 YP_741476.1 CDS Mlg_0632 NC_008340.1 681846 682454 D PFAM: cytoplasmic chaperone TorD family protein; KEGG: cte:CT0493 hypothetical protein; cytoplasmic chaperone TorD family protein 681846..682454 Alkalilimnicola ehrlichii MLHE-1 4270615 YP_741477.1 CDS Mlg_0633 NC_008340.1 682469 684748 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: tth:TTC0155 thiosulfate reductase precursor; molybdopterin oxidoreductase 682469..684748 Alkalilimnicola ehrlichii MLHE-1 4270616 YP_741478.1 CDS Mlg_0634 NC_008340.1 684745 685509 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: eba:ebA1012 molybdenum enzyme of unknown function, medium subunit; 4Fe-4S ferredoxin 684745..685509 Alkalilimnicola ehrlichii MLHE-1 4270823 YP_741479.1 CDS Mlg_0635 NC_008340.1 685509 686237 D KEGG: dde:Dde_0680 formate dehydrogenase gamma subunit; formate dehydrogenase gamma subunit 685509..686237 Alkalilimnicola ehrlichii MLHE-1 4270824 YP_741480.1 CDS Mlg_0636 NC_008340.1 686292 687221 R PFAM: Auxin Efflux Carrier; KEGG: pol:Bpro_4280 auxin efflux carrier; auxin efflux carrier complement(686292..687221) Alkalilimnicola ehrlichii MLHE-1 4270825 YP_741481.1 CDS Mlg_0637 NC_008340.1 687513 688748 D PFAM: phage integrase; KEGG: pol:Bpro_0966 phage integrase; phage integrase 687513..688748 Alkalilimnicola ehrlichii MLHE-1 4270826 YP_741482.1 CDS Mlg_0638 NC_008340.1 689054 689254 D PFAM: Prophage CP4-57 regulatory; KEGG: dar:Daro_2246 prophage CP4-57 regulatory; phage transcriptional regulator, AlpA 689054..689254 Alkalilimnicola ehrlichii MLHE-1 4270827 YP_741483.1 CDS Mlg_0639 NC_008340.1 689254 691800 D KEGG: bme:BMEI1696 hypothetical membrane spanning protein; hypothetical protein 689254..691800 Alkalilimnicola ehrlichii MLHE-1 4270828 YP_741484.1 CDS Mlg_0640 NC_008340.1 692370 692735 D hypothetical protein 692370..692735 Alkalilimnicola ehrlichii MLHE-1 4270829 YP_741485.1 CDS Mlg_0641 NC_008340.1 692735 692971 D hypothetical protein 692735..692971 Alkalilimnicola ehrlichii MLHE-1 4270830 YP_741486.1 CDS Mlg_0642 NC_008340.1 692968 693342 D KEGG: eba:ebA809 hypothetical protein; hypothetical protein 692968..693342 Alkalilimnicola ehrlichii MLHE-1 4270831 YP_741487.1 CDS Mlg_0643 NC_008340.1 693339 694868 D hypothetical protein 693339..694868 Alkalilimnicola ehrlichii MLHE-1 4270832 YP_741488.1 CDS Mlg_0644 NC_008340.1 694910 696049 D TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: sil:SPO2261 major capsid protein, HK97 family; HK97 family phage major capsid protein 694910..696049 Alkalilimnicola ehrlichii MLHE-1 4270833 YP_741489.1 CDS Mlg_0645 NC_008340.1 696257 696538 D hypothetical protein 696257..696538 Alkalilimnicola ehrlichii MLHE-1 4270834 YP_741490.1 CDS Mlg_0646 NC_008340.1 697261 698394 R KEGG: pst:PSPTO3852 hypothetical protein; hypothetical protein complement(697261..698394) Alkalilimnicola ehrlichii MLHE-1 4270836 YP_741491.1 CDS Mlg_0647 NC_008340.1 698391 699566 R KEGG: pst:PSPTO3852 hypothetical protein; hypothetical protein complement(698391..699566) Alkalilimnicola ehrlichii MLHE-1 4270837 YP_741492.1 CDS Mlg_0648 NC_008340.1 699563 703240 R PFAM: Peptidoglycan-binding LysM; peptidoglycan-binding protein LysM complement(699563..703240) Alkalilimnicola ehrlichii MLHE-1 4270838 YP_741493.1 CDS Mlg_0649 NC_008340.1 703237 704028 R KEGG: pst:PSPTO3850 hypothetical protein; hypothetical protein complement(703237..704028) Alkalilimnicola ehrlichii MLHE-1 4270839 YP_741494.1 CDS Mlg_0650 NC_008340.1 704043 706226 R PFAM: Rhs element Vgr protein; KEGG: eca:ECA4142 RHS accessory genetic element; Rhs element Vgr protein complement(704043..706226) Alkalilimnicola ehrlichii MLHE-1 4268262 YP_741495.1 CDS Mlg_0651 NC_008340.1 706380 707954 R PFAM: outer membrane efflux protein; KEGG: gme:Gmet_1650 outer membrane efflux protein; outer membrane efflux protein complement(706380..707954) Alkalilimnicola ehrlichii MLHE-1 4268263 YP_741496.1 CDS Mlg_0652 NC_008340.1 707951 711034 R PFAM: acriflavin resistance protein; KEGG: sth:STH3276 AcrB family membrane transport protein; acriflavin resistance protein complement(707951..711034) Alkalilimnicola ehrlichii MLHE-1 4268264 YP_741497.1 CDS Mlg_0653 NC_008340.1 711031 712260 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: syf:Synpcc7942_1870 secretion protein HlyD; RND family efflux transporter MFP subunit complement(711031..712260) Alkalilimnicola ehrlichii MLHE-1 4268265 YP_741498.1 CDS Mlg_0654 NC_008340.1 712511 713956 D TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: tcx:Tcr_0186 K+ transporter trk; TrkH family potassium uptake protein 712511..713956 Alkalilimnicola ehrlichii MLHE-1 4268266 YP_741499.1 CDS glgC NC_008340.1 714232 715503 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 714232..715503 Alkalilimnicola ehrlichii MLHE-1 4268267 YP_741500.1 CDS Mlg_0656 NC_008340.1 715591 718380 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: noc:Noc_1406 cation transport ATPase; HAD superfamily P-type ATPase 715591..718380 Alkalilimnicola ehrlichii MLHE-1 4268268 YP_741501.1 CDS cvrA NC_008340.1 718430 720223 R the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter complement(718430..720223) Alkalilimnicola ehrlichii MLHE-1 4268269 YP_741502.1 CDS Mlg_0658 NC_008340.1 720314 720703 D KEGG: chy:CHY_1194 PII family protein; hypothetical protein 720314..720703 Alkalilimnicola ehrlichii MLHE-1 4268270 YP_741503.1 CDS Mlg_0659 NC_008340.1 720753 722264 D PFAM: protein of unknown function DUF1538; KEGG: wsu:WS0013 hypothetical protein; hypothetical protein 720753..722264 Alkalilimnicola ehrlichii MLHE-1 4268271 YP_741504.1 CDS Mlg_0660 NC_008340.1 722261 722608 D KEGG: wsu:WS0015 hypothetical protein; hypothetical protein 722261..722608 Alkalilimnicola ehrlichii MLHE-1 4268272 YP_741505.1 CDS Mlg_0661 NC_008340.1 722636 723025 D PFAM: CBS domain containing protein; KEGG: wsu:WS0014 hypothetical protein; signal-transduction protein 722636..723025 Alkalilimnicola ehrlichii MLHE-1 4268273 YP_741506.1 CDS Mlg_0662 NC_008340.1 723056 723658 D PFAM: Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: mca:MCA2850 hypothetical protein; type 12 methyltransferase 723056..723658 Alkalilimnicola ehrlichii MLHE-1 4268274 YP_741507.1 CDS Mlg_0663 NC_008340.1 724499 725623 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tth:TTC0284 pleiotropic regulatory protein; DegT/DnrJ/EryC1/StrS aminotransferase complement(724499..725623) Alkalilimnicola ehrlichii MLHE-1 4268275 YP_741508.1 CDS Mlg_0664 NC_008340.1 725768 726775 R catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase complement(725768..726775) Alkalilimnicola ehrlichii MLHE-1 4268276 YP_741509.1 CDS Mlg_0665 NC_008340.1 726956 730111 R KEGG: cvi:CV1033 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(726956..730111) Alkalilimnicola ehrlichii MLHE-1 4268277 YP_741510.1 CDS Mlg_0666 NC_008340.1 730123 732876 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: pol:Bpro_4149 periplasmic sensor signal transduction histidine kinase; periplasmic sensor signal transduction histidine kinase complement(730123..732876) Alkalilimnicola ehrlichii MLHE-1 4268278 YP_741511.1 CDS Mlg_0667 NC_008340.1 732869 733096 R KEGG: pol:Bpro_4148 hypothetical protein; hypothetical protein complement(732869..733096) Alkalilimnicola ehrlichii MLHE-1 4268462 YP_741512.1 CDS Mlg_0668 NC_008340.1 733110 735269 R KEGG: pol:Bpro_4151 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: PAS domain containing protein; Exonuclease; PAS/PAC sensor protein complement(733110..735269) Alkalilimnicola ehrlichii MLHE-1 4268463 YP_741513.1 CDS Mlg_0669 NC_008340.1 735291 735662 R PFAM: response regulator receiver; KEGG: pol:Bpro_4150 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(735291..735662) Alkalilimnicola ehrlichii MLHE-1 4268464 YP_741514.1 CDS Mlg_0670 NC_008340.1 735813 737690 R PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase KEGG: vpa:VPA0075 hypothetical protein; cyclic nucleotide-binding protein complement(735813..737690) Alkalilimnicola ehrlichii MLHE-1 4268465 YP_741515.1 CDS Mlg_0671 NC_008340.1 738074 740179 D PFAM: Na+/solute symporter; KEGG: csa:Csal_2927 Na+/solute symporter; Na+/solute symporter 738074..740179 Alkalilimnicola ehrlichii MLHE-1 4268466 YP_741516.1 CDS Mlg_0672 NC_008340.1 740194 740772 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mac:MA1362 O-linked GlcNAc transferase; TPR repeat-containing protein 740194..740772 Alkalilimnicola ehrlichii MLHE-1 4268467 YP_741517.1 CDS Mlg_0673 NC_008340.1 740896 742833 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(740896..742833) Alkalilimnicola ehrlichii MLHE-1 4268468 YP_741518.1 CDS Mlg_0674 NC_008340.1 743173 744534 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pae:PA4726 probable two-component response regulator; two-component response regulator CbrB complement(743173..744534) Alkalilimnicola ehrlichii MLHE-1 4268469 YP_741519.1 CDS Mlg_0675 NC_008340.1 744538 747465 R KEGG: pfo:Pfl_4807 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; two-component sensor kinase CbrA complement(744538..747465) Alkalilimnicola ehrlichii MLHE-1 4268470 YP_741520.1 CDS Mlg_0676 NC_008340.1 747753 748685 R PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: cvi:CV3433 glutamyl-tRNA synthetase; glutamate--tRNA ligase complement(747753..748685) Alkalilimnicola ehrlichii MLHE-1 4268471 YP_741521.1 CDS Mlg_0677 NC_008340.1 748862 749299 D KEGG: mca:MCA0562 hypothetical protein; hypothetical protein 748862..749299 Alkalilimnicola ehrlichii MLHE-1 4268472 YP_741522.1 CDS Mlg_0678 NC_008340.1 749327 749716 R PFAM: GTP cyclohydrolase I; KEGG: mfa:Mfla_1400 GTP cyclohydrolase I; GTP cyclohydrolase I complement(749327..749716) Alkalilimnicola ehrlichii MLHE-1 4268473 YP_741523.1 CDS Mlg_0679 NC_008340.1 749902 753408 D TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; KEGG: pae:PA1527 chromosome segregation protein; chromosome segregation protein SMC 749902..753408 Alkalilimnicola ehrlichii MLHE-1 4268474 YP_741524.1 CDS Mlg_0680 NC_008340.1 753557 754654 D TIGRFAM: cell division protein ZipA; PFAM: ZipA, C-terminal FtsZ-binding region; KEGG: ilo:IL1701 secreted cell division protein; cell division protein ZipA 753557..754654 Alkalilimnicola ehrlichii MLHE-1 4268475 YP_741525.1 CDS Mlg_0681 NC_008340.1 754660 756681 D KEGG: reu:Reut_A1886 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: helix-hairpin-helix motif; BRCT domain protein; NAD-dependent DNA ligase; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; SMART: Helix-hairpin-helix DNA-binding, class 1; DNA ligase, NAD-dependent 754660..756681 Alkalilimnicola ehrlichii MLHE-1 4268476 YP_741526.1 CDS Mlg_0682 NC_008340.1 756947 759028 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: pae:PA4959 hypothetical protein; response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(756947..759028) Alkalilimnicola ehrlichii MLHE-1 4268477 YP_741527.1 CDS Mlg_0683 NC_008340.1 759041 760087 R TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: xcb:XC_1842 hypothetical protein; L-lysine 2,3-aminomutase complement(759041..760087) Alkalilimnicola ehrlichii MLHE-1 4268478 YP_741528.1 CDS Mlg_0684 NC_008340.1 760216 760785 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 760216..760785 Alkalilimnicola ehrlichii MLHE-1 4268479 YP_741529.1 CDS Mlg_0685 NC_008340.1 760799 761743 D PFAM: tRNA synthetase, class II (D, K and N); KEGG: vch:VC2655 lysyl-tRNA synthetase-related protein; tRNA synthetase, class II (D, K and N) 760799..761743 Alkalilimnicola ehrlichii MLHE-1 4268844 YP_741530.1 CDS Mlg_0686 NC_008340.1 761751 762116 R KEGG: tbd:Tbd_1102 hypothetical protein; hypothetical protein complement(761751..762116) Alkalilimnicola ehrlichii MLHE-1 4268845 YP_741531.1 CDS Mlg_0687 NC_008340.1 762183 763037 D PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: mca:MCA0359 PHP domain protein; phosphotransferase domain-containing protein 762183..763037 Alkalilimnicola ehrlichii MLHE-1 4268846 YP_741532.1 CDS Mlg_0688 NC_008340.1 763202 764389 D catalyzes the formation of beta-ketovaleryl-CoA from acetyl-CoA and propionyl-CoA; beta-ketothiolase 763202..764389 Alkalilimnicola ehrlichii MLHE-1 4268847 YP_741533.1 CDS Mlg_0689 NC_008340.1 764498 766669 R KEGG: tbd:Tbd_0085 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and response regulator receiver modulation; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(764498..766669) Alkalilimnicola ehrlichii MLHE-1 4268848 YP_741534.1 CDS Mlg_0690 NC_008340.1 766727 768361 R KEGG: rfr:Rfer_2486 histidine kinase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; HDIG domain protein; SMART: metal-dependent phosphohydrolase, HD region; metal dependent phosphohydrolase complement(766727..768361) Alkalilimnicola ehrlichii MLHE-1 4268849 YP_741535.1 CDS Mlg_0691 NC_008340.1 768540 770600 D KEGG: tbd:Tbd_1191 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) and response regulator receiver modulation; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase 768540..770600 Alkalilimnicola ehrlichii MLHE-1 4268850 YP_741536.1 CDS Mlg_0692 NC_008340.1 770642 770842 R hypothetical protein complement(770642..770842) Alkalilimnicola ehrlichii MLHE-1 4268851 YP_741537.1 CDS Mlg_0693 NC_008340.1 770997 772373 R KEGG: noc:Noc_0612 exodeoxyribonuclease VII; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type; exodeoxyribonuclease VII large subunit complement(770997..772373) Alkalilimnicola ehrlichii MLHE-1 4268852 YP_741538.1 CDS Mlg_0694 NC_008340.1 772864 773757 D PFAM: protein of unknown function DUF1295; KEGG: nar:Saro_0560 protein of unknown function DUF1295; hypothetical protein 772864..773757 Alkalilimnicola ehrlichii MLHE-1 4268853 YP_741539.1 CDS Mlg_0695 NC_008340.1 773697 774209 R KEGG: rru:Rru_A2723 rubrerythrin; rubrerythrin complement(773697..774209) Alkalilimnicola ehrlichii MLHE-1 4268854 YP_741540.1 CDS Mlg_0696 NC_008340.1 774206 775051 R PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: rru:Rru_A2722 2-oxoglutarate synthase, beta subunit; thiamine pyrophosphate binding domain-containing protein complement(774206..775051) Alkalilimnicola ehrlichii MLHE-1 4268855 YP_741541.1 CDS Mlg_0697 NC_008340.1 775048 776778 R PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: rru:Rru_A2721 2-oxoglutarate synthase, alpha subunit; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein complement(775048..776778) Alkalilimnicola ehrlichii MLHE-1 4268856 YP_741542.1 CDS Mlg_0698 NC_008340.1 777079 778545 D PFAM: flagellin domain protein; KEGG: lpn:lpg1340 flagellin; flagellin domain-containing protein 777079..778545 Alkalilimnicola ehrlichii MLHE-1 4268857 YP_741543.1 CDS Mlg_0699 NC_008340.1 778630 781395 R TIGRFAM: methyltransferase FkbM family; KEGG: csa:Csal_1986 sulfotransferase; FkbM family methyltransferase complement(778630..781395) Alkalilimnicola ehrlichii MLHE-1 4268858 YP_741544.1 CDS Mlg_0700 NC_008340.1 781683 783143 D PFAM: flagellin domain protein; KEGG: noc:Noc_2367 flagellin; flagellin domain-containing protein 781683..783143 Alkalilimnicola ehrlichii MLHE-1 4268859 YP_741545.1 CDS Mlg_0701 NC_008340.1 783234 783623 D PFAM: flagellar protein FlaG protein; KEGG: dar:Daro_0783 flagellar protein FlaG protein; flagellar protein FlaG protein 783234..783623 Alkalilimnicola ehrlichii MLHE-1 4268860 YP_741546.1 CDS Mlg_0702 NC_008340.1 784226 784657 D PFAM: flagellar protein FlaG protein; KEGG: gsu:GSU3015 flagellin FlaG; flagellar protein FlaG protein 784226..784657 Alkalilimnicola ehrlichii MLHE-1 4268091 YP_741547.1 CDS Mlg_0703 NC_008340.1 784745 786178 D PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: neu:NE1595 flagellar hook-associated protein 2; flagellar hook-associated 2 domain-containing protein 784745..786178 Alkalilimnicola ehrlichii MLHE-1 4268092 YP_741548.1 CDS Mlg_0704 NC_008340.1 786827 787264 D PFAM: flagellar protein FliS; KEGG: noc:Noc_2364 flagellar protein FliS; flagellar protein FliS 786827..787264 Alkalilimnicola ehrlichii MLHE-1 4268093 YP_741549.1 CDS Mlg_0705 NC_008340.1 787267 787602 D KEGG: plu:plu1951 flagellar protein FliT; flagellar protein FliT 787267..787602 Alkalilimnicola ehrlichii MLHE-1 4268094 YP_741550.1 CDS Mlg_0706 NC_008340.1 787693 789375 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: noc:Noc_2362 sigma-54 specific, transcriptional regulator, fis family; Fis family transcriptional regulator 787693..789375 Alkalilimnicola ehrlichii MLHE-1 4268095 YP_741551.1 CDS Mlg_0707 NC_008340.1 789573 790982 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: hch:HCH_05196 sigma 54-dependent transcriptional activator containing CheY-like receiver domain; Fis family transcriptional regulator 789573..790982 Alkalilimnicola ehrlichii MLHE-1 4268096 YP_741552.1 CDS Mlg_0708 NC_008340.1 791019 791345 D TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: noc:Noc_2360 flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex subunit FliE 791019..791345 Alkalilimnicola ehrlichii MLHE-1 4268097 YP_741553.1 CDS Mlg_0709 NC_008340.1 791396 793138 D TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; KEGG: noc:Noc_2359 flagellar FliF M-ring protein; flagellar M-ring protein FliF 791396..793138 Alkalilimnicola ehrlichii MLHE-1 4268098 YP_741554.1 CDS Mlg_0710 NC_008340.1 793125 794129 D PFAM: flagellar motor switch protein FliG; KEGG: xcb:XC_2261 flagellar protein; flagellar motor switch protein FliG 793125..794129 Alkalilimnicola ehrlichii MLHE-1 4268099 YP_741555.1 CDS Mlg_0711 NC_008340.1 794155 795042 D PFAM: flagellar assembly protein FliH; KEGG: noc:Noc_2357 flagellar assembly protein FliH; flagellar assembly protein FliH 794155..795042 Alkalilimnicola ehrlichii MLHE-1 4268100 YP_741556.1 CDS Mlg_0712 NC_008340.1 795035 796411 D KEGG: noc:Noc_2356 flagellar biosynthesis/type III secretory pathway ATPase, FliI/YscN; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; SMART: AAA ATPase; flagellar protein export ATPase FliI 795035..796411 Alkalilimnicola ehrlichii MLHE-1 4268101 YP_741557.1 CDS Mlg_0713 NC_008340.1 796473 796919 D TIGRFAM: flagellar export protein FliJ; KEGG: ppu:PP4365 flagellar protein FliJ; flagellar export protein FliJ 796473..796919 Alkalilimnicola ehrlichii MLHE-1 4268102 YP_741558.1 CDS Mlg_0714 NC_008340.1 797522 798631 D PFAM: flagellar hook-length control protein; KEGG: pae:PA1441 flagellar hook-length control protein FliK; flagellar hook-length control protein 797522..798631 Alkalilimnicola ehrlichii MLHE-1 4268103 YP_741559.1 CDS Mlg_0715 NC_008340.1 798996 799901 D PFAM: peptidase M48, Ste24p; HtpX domain protein; KEGG: nmu:Nmul_A1034 peptidase M48, Ste24p; HtpX domain-containing protein 798996..799901 Alkalilimnicola ehrlichii MLHE-1 4268104 YP_741560.1 CDS Mlg_0716 NC_008340.1 800014 800955 D PFAM: protein of unknown function DUF6, transmembrane; KEGG: hch:HCH_05375 permease of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 800014..800955 Alkalilimnicola ehrlichii MLHE-1 4268105 YP_741561.1 CDS Mlg_0717 NC_008340.1 801010 801288 R PFAM: BolA family protein; KEGG: mca:MCA1644 BolA protein; transcriptional regulator BolA complement(801010..801288) Alkalilimnicola ehrlichii MLHE-1 4268106 YP_741562.1 CDS Mlg_0718 NC_008340.1 801285 801584 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; hypothetical protein complement(801285..801584) Alkalilimnicola ehrlichii MLHE-1 4268107 YP_741563.1 CDS Mlg_0719 NC_008340.1 801779 802402 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: pfo:Pfl_1488 SUA5/YciO/YrdC/YwlC; translation factor SUA5 801779..802402 Alkalilimnicola ehrlichii MLHE-1 4268108 YP_741564.1 CDS Mlg_0720 NC_008340.1 802710 803924 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 802710..803924 Alkalilimnicola ehrlichii MLHE-1 4268687 YP_741565.1 CDS Mlg_0721 NC_008340.1 803921 804751 D PFAM: chromosome segregation and condensation protein ScpA; KEGG: ppu:PP4498 segregation and condensation protein A; condensin subunit ScpA 803921..804751 Alkalilimnicola ehrlichii MLHE-1 4268688 YP_741566.1 CDS Mlg_0722 NC_008340.1 804755 805339 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: mca:MCA2206 segregation and condensation protein B; condensin subunit ScpB 804755..805339 Alkalilimnicola ehrlichii MLHE-1 4268689 YP_741567.1 CDS Mlg_0723 NC_008340.1 805914 806141 R hypothetical protein complement(805914..806141) Alkalilimnicola ehrlichii MLHE-1 4268690 YP_741568.1 CDS Mlg_0724 NC_008340.1 806230 806691 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gvi:glr1369 hypothetical protein; BadM/Rrf2 family transcriptional regulator 806230..806691 Alkalilimnicola ehrlichii MLHE-1 4268691 YP_741569.1 CDS Mlg_0725 NC_008340.1 806767 808215 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase 806767..808215 Alkalilimnicola ehrlichii MLHE-1 4268692 YP_741570.1 CDS Mlg_0726 NC_008340.1 808273 809022 D KEGG: noc:Noc_2489 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; FeS assembly ATPase SufC 808273..809022 Alkalilimnicola ehrlichii MLHE-1 4268693 YP_741571.1 CDS Mlg_0727 NC_008340.1 809033 810358 D TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: csa:Csal_1235 FeS assembly protein SufD; FeS assembly protein SufD 809033..810358 Alkalilimnicola ehrlichii MLHE-1 4268694 YP_741572.1 CDS Mlg_0728 NC_008340.1 810355 811620 D TIGRFAM: cysteine desulfurases, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gvi:glr1373 probable aminotransferase; SufS subfamily cysteine desulfurase 810355..811620 Alkalilimnicola ehrlichii MLHE-1 4268695 YP_741573.1 CDS Mlg_0729 NC_008340.1 811719 812234 D TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: ade:Adeh_0847 SUF system FeS assembly protein; NifU family SUF system FeS assembly protein 811719..812234 Alkalilimnicola ehrlichii MLHE-1 4268696 YP_741574.1 CDS Mlg_0730 NC_008340.1 812347 813399 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: mca:MCA2814 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 812347..813399 Alkalilimnicola ehrlichii MLHE-1 4268697 YP_741575.1 CDS Mlg_0731 NC_008340.1 813396 816437 D PFAM: acriflavin resistance protein; KEGG: dde:Dde_0670 transporter, AcrB/D/F family; acriflavin resistance protein 813396..816437 Alkalilimnicola ehrlichii MLHE-1 4268698 YP_741576.1 CDS Mlg_0732 NC_008340.1 816572 817879 D KEGG: dde:Dde_0673 glycine betaine/L-proline transport ATP binding subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 816572..817879 Alkalilimnicola ehrlichii MLHE-1 4268699 YP_741577.1 CDS Mlg_0733 NC_008340.1 817876 818724 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csa:Csal_1902 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 817876..818724 Alkalilimnicola ehrlichii MLHE-1 4268700 YP_741578.1 CDS Mlg_0734 NC_008340.1 818751 819599 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: csa:Csal_3102 substrate-binding region of ABC-type glycine betaine transport system; response regulator receiver protein 818751..819599 Alkalilimnicola ehrlichii MLHE-1 4268701 YP_741579.1 CDS Mlg_0735 NC_008340.1 819836 820267 D hypothetical protein 819836..820267 Alkalilimnicola ehrlichii MLHE-1 4268702 YP_741580.1 CDS Mlg_0736 NC_008340.1 820577 821590 R KEGG: tcx:Tcr_0552 lipoprotein; lipoprotein complement(820577..821590) Alkalilimnicola ehrlichii MLHE-1 4268703 YP_741581.1 CDS Mlg_0737 NC_008340.1 821837 822958 D PFAM: ferrochelatase; KEGG: noc:Noc_1545 ferrochelatase; ferrochelatase 821837..822958 Alkalilimnicola ehrlichii MLHE-1 4270498 YP_741582.1 CDS Mlg_0738 NC_008340.1 822951 823445 D KEGG: bja:blr7315 hypothetical protein; hypothetical protein 822951..823445 Alkalilimnicola ehrlichii MLHE-1 4270499 YP_741583.1 CDS Mlg_0739 NC_008340.1 823449 823715 D PFAM: multiple resistance and pH regulation protein F; KEGG: noc:Noc_1286 multiple resistance and pH regulation protein F; multiple resistance and pH regulation protein F 823449..823715 Alkalilimnicola ehrlichii MLHE-1 4270500 YP_741584.1 CDS Mlg_0740 NC_008340.1 823718 824017 D subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit G 823718..824017 Alkalilimnicola ehrlichii MLHE-1 4270501 YP_741585.1 CDS Mlg_0741 NC_008340.1 824014 824967 D KEGG: bja:blr7318 hypothetical protein; hypothetical protein 824014..824967 Alkalilimnicola ehrlichii MLHE-1 4270502 YP_741586.1 CDS Mlg_0742 NC_008340.1 824967 825278 D PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: noc:Noc_1282 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase, chain 4L 824967..825278 Alkalilimnicola ehrlichii MLHE-1 4270503 YP_741587.1 CDS Mlg_0743 NC_008340.1 825275 826702 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1281 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 825275..826702 Alkalilimnicola ehrlichii MLHE-1 4270504 YP_741588.1 CDS Mlg_0744 NC_008340.1 826699 828213 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1280 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 826699..828213 Alkalilimnicola ehrlichii MLHE-1 4270505 YP_741589.1 CDS Mlg_0745 NC_008340.1 828353 829012 D PFAM: NUDIX hydrolase; KEGG: dge:Dgeo_1510 NUDIX hydrolase; NUDIX hydrolase 828353..829012 Alkalilimnicola ehrlichii MLHE-1 4270506 YP_741590.1 CDS Mlg_0746 NC_008340.1 829043 830113 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 829043..830113 Alkalilimnicola ehrlichii MLHE-1 4270507 YP_741591.1 CDS Mlg_0747 NC_008340.1 830129 831280 D PFAM: major facilitator superfamily MFS_1; KEGG: wsu:WS1365 transport protein; major facilitator transporter 830129..831280 Alkalilimnicola ehrlichii MLHE-1 4270508 YP_741592.1 CDS Mlg_0748 NC_008340.1 831378 833069 D PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: dar:Daro_0993 alpha/beta hydrolase fold:poly-beta-hydroxybutyrate polymerase, N-terminal; poly-beta-hydroxybutyrate polymerase domain-containing protein 831378..833069 Alkalilimnicola ehrlichii MLHE-1 4270509 YP_741593.1 CDS Mlg_0749 NC_008340.1 833111 834001 D PFAM: Silent information regulator protein Sir2; KEGG: transcriptional regulator, Sir2 family; silent information regulator protein Sir2 833111..834001 Alkalilimnicola ehrlichii MLHE-1 4270510 YP_741594.1 CDS Mlg_0750 NC_008340.1 834131 835090 R PFAM: Radical SAM domain protein; KEGG: noc:Noc_0590 radical SAM domain protein; radical SAM domain-containing protein complement(834131..835090) Alkalilimnicola ehrlichii MLHE-1 4270511 YP_741595.1 CDS Mlg_0751 NC_008340.1 835121 836542 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: dvu:DVU1037 mercuric reductase; pyridine nucleotide-disulfide oxidoreductase dimerisation region complement(835121..836542) Alkalilimnicola ehrlichii MLHE-1 4270512 YP_741596.1 CDS Mlg_0752 NC_008340.1 836539 837228 R KEGG: lpn:lpg0596 hypothetical protein; hypothetical protein complement(836539..837228) Alkalilimnicola ehrlichii MLHE-1 4270513 YP_741597.1 CDS Mlg_0753 NC_008340.1 837322 838533 R KEGG: sil:SPO1611 hypothetical protein; hypothetical protein complement(837322..838533) Alkalilimnicola ehrlichii MLHE-1 4270514 YP_741598.1 CDS Mlg_0754 NC_008340.1 838661 839281 R KEGG: noc:Noc_0587 hypothetical protein; hypothetical protein complement(838661..839281) Alkalilimnicola ehrlichii MLHE-1 4270515 YP_741599.1 CDS Mlg_0755 NC_008340.1 839278 839982 R PFAM: glycosyl transferase, family 2; KEGG: eba:ebA1112 conserved hypothetical protein, predicted glycosyl transferase 2; glycosyl transferase complement(839278..839982) Alkalilimnicola ehrlichii MLHE-1 4268568 YP_741600.1 CDS Mlg_0756 NC_008340.1 840059 840724 R PFAM: Rhodanese domain protein; regulatory protein, ArsR; KEGG: bps:BPSS2118 ArsR family transcriptional regulator; ArsR family transcriptional regulator complement(840059..840724) Alkalilimnicola ehrlichii MLHE-1 4268569 YP_741601.1 CDS Mlg_0757 NC_008340.1 840982 842391 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rubredoxin-type Fe(Cys)4 protein; KEGG: tcx:Tcr_0037 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 840982..842391 Alkalilimnicola ehrlichii MLHE-1 4268570 YP_741602.1 CDS Mlg_0758 NC_008340.1 842361 843347 R hypothetical protein complement(842361..843347) Alkalilimnicola ehrlichii MLHE-1 4268571 YP_741603.1 CDS Mlg_0759 NC_008340.1 843445 845601 R KEGG: nmu:Nmul_A1709 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CHASE domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(843445..845601) Alkalilimnicola ehrlichii MLHE-1 4268572 YP_741604.1 CDS Mlg_0760 NC_008340.1 845721 847208 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; MASE1 domain protein; KEGG: tbd:Tbd_0636 diguanylate cyclase (GGDEF domain); diguanylate cyclase complement(845721..847208) Alkalilimnicola ehrlichii MLHE-1 4268573 YP_741605.1 CDS Mlg_0761 NC_008340.1 847540 847896 R PFAM: regulatory protein, MerR; KEGG: noc:Noc_1147 transcriptional regulatory protein, MerR family; MerR family transcriptional regulator complement(847540..847896) Alkalilimnicola ehrlichii MLHE-1 4268575 YP_741606.1 CDS ihfA NC_008340.1 847871 848176 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(847871..848176) Alkalilimnicola ehrlichii MLHE-1 4268576 YP_741607.1 CDS pheT NC_008340.1 848181 850574 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(848181..850574) Alkalilimnicola ehrlichii MLHE-1 4268577 YP_741608.1 CDS Mlg_0764 NC_008340.1 850629 851660 R KEGG: pae:PA2740 phenylalanyl-tRNA synthetase, alpha-subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase, class IIc; aminoacyl tRNA synthetase, class II domain protein; phenylalanyl-tRNA synthetase subunit alpha complement(850629..851660) Alkalilimnicola ehrlichii MLHE-1 4268578 YP_741609.1 CDS Mlg_0765 NC_008340.1 851847 852206 R TIGRFAM: ribosomal protein L20; KEGG: hch:HCH_04576 ribosomal protein L20; 50S ribosomal protein L20 complement(851847..852206) Alkalilimnicola ehrlichii MLHE-1 4268579 YP_741610.1 CDS rpmI NC_008340.1 852237 852434 R PFAM: ribosomal protein L35; KEGG: noc:Noc_1142 50S ribosomal protein L35; 50S ribosomal protein L35 complement(852237..852434) Alkalilimnicola ehrlichii MLHE-1 4268580 YP_741611.1 CDS Mlg_0767 NC_008340.1 852513 852953 R TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: noc:Noc_1141 initiation factor 3; translation initiation factor 3 complement(852513..852953) Alkalilimnicola ehrlichii MLHE-1 4268581 YP_741612.1 CDS thrS NC_008340.1 853071 854996 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(853071..854996) Alkalilimnicola ehrlichii MLHE-1 4268582 YP_741613.1 CDS Mlg_0769 NC_008340.1 855109 856101 R TIGRFAM: alpha-L-glutamate ligase-like protein; KEGG: ppr:PBPRA1106 hypothetical protein; alpha-L-glutamate ligase complement(855109..856101) Alkalilimnicola ehrlichii MLHE-1 4268583 YP_741614.1 CDS Mlg_0770 NC_008340.1 856101 857621 R KEGG: csa:Csal_1880 hypothetical protein; hypothetical protein complement(856101..857621) Alkalilimnicola ehrlichii MLHE-1 4269587 YP_741615.1 CDS Mlg_0771 NC_008340.1 857632 858432 R PFAM: protein of unknown function DUF785; KEGG: csa:Csal_1879 protein of unknown function DUF785; hypothetical protein complement(857632..858432) Alkalilimnicola ehrlichii MLHE-1 4269588 YP_741616.1 CDS Mlg_0772 NC_008340.1 858649 859374 D PFAM: 20S proteasome, A and B subunits; KEGG: mca:MCA2055 hypothetical protein; 20S proteasome subunits A and B 858649..859374 Alkalilimnicola ehrlichii MLHE-1 4269589 YP_741617.1 CDS Mlg_0773 NC_008340.1 859391 860449 R KEGG: hch:HCH_03595 hypothetical protein; hypothetical protein complement(859391..860449) Alkalilimnicola ehrlichii MLHE-1 4269590 YP_741618.1 CDS Mlg_0774 NC_008340.1 860446 861381 R PFAM: protein of unknown function DUF403; KEGG: hch:HCH_00984 hypothetical protein; hypothetical protein complement(860446..861381) Alkalilimnicola ehrlichii MLHE-1 4269591 YP_741619.1 CDS Mlg_0775 NC_008340.1 861381 862850 R PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: mca:MCA2056 hypothetical protein; hypothetical protein complement(861381..862850) Alkalilimnicola ehrlichii MLHE-1 4269592 YP_741620.1 CDS Mlg_0776 NC_008340.1 863050 863850 D PFAM: transglutaminase domain protein; KEGG: hch:HCH_03352 transglutaminase-like enzyme, cysteine protease; transglutaminase domain-containing protein 863050..863850 Alkalilimnicola ehrlichii MLHE-1 4269593 YP_741621.1 CDS Mlg_0777 NC_008340.1 863853 864323 R PFAM: Spore coat U domain protein; KEGG: rfe:RF_0707 hypothetical protein; spore coat U domain-containing protein complement(863853..864323) Alkalilimnicola ehrlichii MLHE-1 4269594 YP_741622.1 CDS Mlg_0778 NC_008340.1 864320 866656 R PFAM: fimbrial biogenesis outer membrane usher protein; KEGG: rso:RSc2693 outer membrane usher transmembrane protein; fimbrial biogenesis outer membrane usher protein complement(864320..866656) Alkalilimnicola ehrlichii MLHE-1 4269595 YP_741623.1 CDS Mlg_0779 NC_008340.1 866708 867460 R KEGG: rso:RSc2694 pili assembly chaperone transmembrane protein; pili assembly chaperone transmembrane protein complement(866708..867460) Alkalilimnicola ehrlichii MLHE-1 4269596 YP_741624.1 CDS Mlg_0780 NC_008340.1 867484 867975 R PFAM: Spore coat U domain protein; KEGG: ade:Adeh_3602 spore coat U; spore coat U domain-containing protein complement(867484..867975) Alkalilimnicola ehrlichii MLHE-1 4269597 YP_741625.1 CDS Mlg_0781 NC_008340.1 868404 870677 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: tdn:Tmden_0279 TonB-dependent receptor; TonB-dependent receptor 868404..870677 Alkalilimnicola ehrlichii MLHE-1 4269598 YP_741626.1 CDS Mlg_0782 NC_008340.1 870677 871354 D KEGG: dar:Daro_2956 cytochrome c biogenesis protein, transmembrane region; cytochrome c biogenesis protein, transmembrane region 870677..871354 Alkalilimnicola ehrlichii MLHE-1 4269599 YP_741627.1 CDS Mlg_0783 NC_008340.1 871412 872422 D KEGG: tdn:Tmden_0275 polyferredoxin-like; polyferredoxin-like protein 871412..872422 Alkalilimnicola ehrlichii MLHE-1 4269600 YP_741628.1 CDS Mlg_0784 NC_008340.1 872409 873422 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tdn:Tmden_0274 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 872409..873422 Alkalilimnicola ehrlichii MLHE-1 4269601 YP_741629.1 CDS Mlg_0785 NC_008340.1 873419 874681 D PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: tdn:Tmden_0273 2-hydroxyglutaryl-CoA dehydratase, D-component; 2-hydroxyglutaryl-CoA dehydratase subunit D 873419..874681 Alkalilimnicola ehrlichii MLHE-1 4269602 YP_741630.1 CDS Mlg_0786 NC_008340.1 874678 875502 D TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: tdn:Tmden_0272 CoA enzyme activase; CoA-substrate-specific enzyme activase 874678..875502 Alkalilimnicola ehrlichii MLHE-1 4269603 YP_741631.1 CDS Mlg_0787 NC_008340.1 875534 876547 R catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta complement(875534..876547) Alkalilimnicola ehrlichii MLHE-1 4269604 YP_741632.1 CDS Mlg_0788 NC_008340.1 876544 878430 R PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: nar:Saro_1757 pyruvate flavodoxin/ferredoxin oxidoreductase-like; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein complement(876544..878430) Alkalilimnicola ehrlichii MLHE-1 4270551 YP_741633.1 CDS Mlg_0789 NC_008340.1 878948 880282 D PFAM: phage integrase; KEGG: vvy:VV1777 integrase; phage integrase 878948..880282 Alkalilimnicola ehrlichii MLHE-1 4270552 YP_741634.1 CDS Mlg_0790 NC_008340.1 880279 880797 D hypothetical protein 880279..880797 Alkalilimnicola ehrlichii MLHE-1 4270553 YP_741635.1 CDS Mlg_0791 NC_008340.1 881246 883249 D KEGG: ppr:PBPRB1439 hypothetical protein; ATPase-like protein 881246..883249 Alkalilimnicola ehrlichii MLHE-1 4270554 YP_741636.1 CDS Mlg_0792 NC_008340.1 883930 884301 D hypothetical protein 883930..884301 Alkalilimnicola ehrlichii MLHE-1 4270555 YP_741637.1 CDS Mlg_0793 NC_008340.1 884301 884537 D hypothetical protein 884301..884537 Alkalilimnicola ehrlichii MLHE-1 4270556 YP_741638.1 CDS Mlg_0794 NC_008340.1 884534 886063 D hypothetical protein 884534..886063 Alkalilimnicola ehrlichii MLHE-1 4270557 YP_741639.1 CDS Mlg_0795 NC_008340.1 886105 887244 D TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: sil:SPO2261 major capsid protein, HK97 family; HK97 family phage major capsid protein 886105..887244 Alkalilimnicola ehrlichii MLHE-1 4270558 YP_741640.1 CDS Mlg_0796 NC_008340.1 888540 889859 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: bbr:BB2925 capsular polysaccharide biosynthesis protein; UDP-glucose/GDP-mannose dehydrogenase 888540..889859 Alkalilimnicola ehrlichii MLHE-1 4270560 YP_741641.1 CDS Mlg_0797 NC_008340.1 889899 891380 D KEGG: hch:HCH_02378 hypothetical protein; hypothetical protein 889899..891380 Alkalilimnicola ehrlichii MLHE-1 4270561 YP_741642.1 CDS Mlg_0798 NC_008340.1 891450 891902 D PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: rso:RSp1019 low molecular weight protein-tyrosine-phosphatase; protein tyrosine phosphatase 891450..891902 Alkalilimnicola ehrlichii MLHE-1 4270562 YP_741643.1 CDS Mlg_0799 NC_008340.1 891977 893158 D PFAM: polysaccharide export protein; KEGG: neu:NE2279 polysaccharide export protein; polysaccharide export protein 891977..893158 Alkalilimnicola ehrlichii MLHE-1 4270563 YP_741644.1 CDS Mlg_0800 NC_008340.1 893186 895351 D PFAM: lipopolysaccharide biosynthesis; KEGG: ade:Adeh_4274 tyrosine kinase; hypothetical protein 893186..895351 Alkalilimnicola ehrlichii MLHE-1 4270564 YP_741645.1 CDS Mlg_0801 NC_008340.1 895275 897281 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: son:SO3171 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein CapD complement(895275..897281) Alkalilimnicola ehrlichii MLHE-1 4270565 YP_741646.1 CDS Mlg_0802 NC_008340.1 897885 899915 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: psb:Psyr_3636 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD complement(897885..899915) Alkalilimnicola ehrlichii MLHE-1 4270566 YP_741647.1 CDS Mlg_0803 NC_008340.1 900165 903719 D TIGRFAM: exodeoxyribonuclease V, gamma subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; KEGG: pae:PA4285 exodeoxyribonuclease V gamma chain; DNA helicase/exodeoxyribonuclease V subunit gamma 900165..903719 Alkalilimnicola ehrlichii MLHE-1 4270634 YP_741648.1 CDS Mlg_0804 NC_008340.1 903716 907444 D TIGRFAM: exodeoxyribonuclease V, beta subunit; PFAM: UvrD/REP helicase; KEGG: pfl:PFL_0741 exodeoxyribonuclease V, beta subunit; DNA helicase/exodeoxyribonuclease V subunit beta 903716..907444 Alkalilimnicola ehrlichii MLHE-1 4270635 YP_741649.1 CDS Mlg_0805 NC_008340.1 907437 909548 D TIGRFAM: exodeoxyribonuclease V, alpha subunit; KEGG: pfl:PFL_0742 exodeoxyribonuclease V, alpha subunit; DNA helicase/exodeoxyribonuclease V subunit alpha 907437..909548 Alkalilimnicola ehrlichii MLHE-1 4270636 YP_741650.1 CDS Mlg_0806 NC_008340.1 909662 910951 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 909662..910951 Alkalilimnicola ehrlichii MLHE-1 4270637 YP_741651.1 CDS Mlg_0807 NC_008340.1 911007 913001 D KEGG: rfr:Rfer_4038 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 911007..913001 Alkalilimnicola ehrlichii MLHE-1 4270638 YP_741652.1 CDS Mlg_0808 NC_008340.1 913009 913455 R KEGG: reu:Reut_A1043 hypothetical protein; hypothetical protein complement(913009..913455) Alkalilimnicola ehrlichii MLHE-1 4270639 YP_741653.1 CDS Mlg_0809 NC_008340.1 913501 914136 R KEGG: yps:YPTB2160 endonuclease III; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; DNA-(apurinic or apyrimidinic site) lyase/endonuclease III complement(913501..914136) Alkalilimnicola ehrlichii MLHE-1 4270640 YP_741654.1 CDS Mlg_0810 NC_008340.1 914166 914891 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cyb:CYB_0748 HAD-superfamily hydrolase, subfamily IA, variant 3; HAD family hydrolase complement(914166..914891) Alkalilimnicola ehrlichii MLHE-1 4270641 YP_741655.1 CDS Mlg_0811 NC_008340.1 914888 915574 R TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: noc:Noc_1170 NADH-ubiquinone oxidoreductase; RnfABCDGE type electron transport complex subunit E complement(914888..915574) Alkalilimnicola ehrlichii MLHE-1 4270642 YP_741656.1 CDS Mlg_0812 NC_008340.1 915806 916468 R TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: noc:Noc_1171 electron transport complex, RnfABCDGE type, G subunit; RnfABCDGE type electron transport complex subunit G complement(915806..916468) Alkalilimnicola ehrlichii MLHE-1 4270643 YP_741657.1 CDS Mlg_0813 NC_008340.1 916465 917406 R TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: noc:Noc_1172 electron transport complex, RnfABCDGE type, D subunit; RnfABCDGE type electron transport complex subunit D complement(916465..917406) Alkalilimnicola ehrlichii MLHE-1 4270644 YP_741658.1 CDS Mlg_0814 NC_008340.1 917457 919004 R part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfC complement(917457..919004) Alkalilimnicola ehrlichii MLHE-1 4270645 YP_741659.1 CDS Mlg_0815 NC_008340.1 919001 919561 R TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: sde:Sde_2400 NADH:ubiquinone oxidoreductase, subunit RnfB; RnfABCDGE type electron transport complex subunit B complement(919001..919561) Alkalilimnicola ehrlichii MLHE-1 4270646 YP_741660.1 CDS Mlg_0816 NC_008340.1 919604 920185 R TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: noc:Noc_0970 electron transport complex, RnfABCDGE type, A subunit; RnfABCDGE type electron transport complex subunit A complement(919604..920185) Alkalilimnicola ehrlichii MLHE-1 4270647 YP_741661.1 CDS metG NC_008340.1 920317 922344 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(920317..922344) Alkalilimnicola ehrlichii MLHE-1 4270648 YP_741662.1 CDS Mlg_0818 NC_008340.1 922479 922853 D TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: mag:amb3406 integral membrane protein possibly involved in chromosome condensation; camphor resistance protein CrcB 922479..922853 Alkalilimnicola ehrlichii MLHE-1 4270649 YP_741663.1 CDS Mlg_0819 NC_008340.1 922850 923215 D TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: nwi:Nwi_0141 camphor resistance CrcB protein; camphor resistance protein CrcB 922850..923215 Alkalilimnicola ehrlichii MLHE-1 4270650 YP_741664.1 CDS Mlg_0820 NC_008340.1 924246 926264 R PFAM: peptidase M48, Ste24p; KEGG: noc:Noc_1831 peptidase M48, Ste24p; peptidase M48, Ste24p complement(924246..926264) Alkalilimnicola ehrlichii MLHE-1 4270651 YP_741665.1 CDS Mlg_0821 NC_008340.1 926428 927300 R PFAM: Bacitracin resistance protein BacA; KEGG: mta:Moth_0571 undecaprenol kinase; undecaprenyl-diphosphatase complement(926428..927300) Alkalilimnicola ehrlichii MLHE-1 4268246 YP_741666.1 CDS Mlg_0822 NC_008340.1 928093 929172 D PFAM: porin, Gram-negative type; KEGG: tbd:Tbd_0448 outer membrane protein (porin); porin 928093..929172 Alkalilimnicola ehrlichii MLHE-1 4268247 YP_741667.1 CDS Mlg_0823 NC_008340.1 929794 930639 D PFAM: CBS domain containing protein; KEGG: mma:MM1660 MG2+ transporter MGTE; CBS domain-containing protein 929794..930639 Alkalilimnicola ehrlichii MLHE-1 4268248 YP_741668.1 CDS Mlg_0824 NC_008340.1 930699 932063 D TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: tdn:Tmden_1342 divalent cation transporter; magnesium transporter 930699..932063 Alkalilimnicola ehrlichii MLHE-1 4268249 YP_741669.1 CDS dcd NC_008340.1 932151 932789 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 932151..932789 Alkalilimnicola ehrlichii MLHE-1 4268250 YP_741670.1 CDS Mlg_0826 NC_008340.1 932821 933198 R TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: yps:YPTB2791 arsenate reductase; arsenate reductase complement(932821..933198) Alkalilimnicola ehrlichii MLHE-1 4268251 YP_741671.1 CDS Mlg_0827 NC_008340.1 933247 936660 R KEGG: sru:SRU_2006 hypothetical protein; hypothetical protein complement(933247..936660) Alkalilimnicola ehrlichii MLHE-1 4268252 YP_741672.1 CDS Mlg_0828 NC_008340.1 936657 937943 R PFAM: metallophosphoesterase; KEGG: sru:SRU_2007 Ser/Thr protein phosphatase; metallophosphoesterase complement(936657..937943) Alkalilimnicola ehrlichii MLHE-1 4268253 YP_741673.1 CDS Mlg_0829 NC_008340.1 938144 938806 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: rpc:RPC_1920 peroxidase; 1-Cys peroxiredoxin 938144..938806 Alkalilimnicola ehrlichii MLHE-1 4268254 YP_741674.1 CDS Mlg_0830 NC_008340.1 938912 939778 D PFAM: beta-lactamase domain protein; KEGG: sil:SPO1030 metallo-beta-lactamase; beta-lactamase domain-containing protein 938912..939778 Alkalilimnicola ehrlichii MLHE-1 4268255 YP_741675.1 CDS Mlg_0831 NC_008340.1 939900 940427 D KEGG: mag:amb0248 6-pyruvoyl-tetrahydropterin synthase; 6-pyruvoyl tetrahydrobiopterin synthase 939900..940427 Alkalilimnicola ehrlichii MLHE-1 4268256 YP_741676.1 CDS Mlg_0832 NC_008340.1 940438 943509 R KEGG: rfr:Rfer_3395 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(940438..943509) Alkalilimnicola ehrlichii MLHE-1 4268257 YP_741677.1 CDS Mlg_0833 NC_008340.1 943733 944701 R PFAM: Polyprenyl synthetase; KEGG: noc:Noc_3032 trans-hexaprenyltranstransferase; trans-hexaprenyltranstransferase complement(943733..944701) Alkalilimnicola ehrlichii MLHE-1 4268259 YP_741678.1 CDS Mlg_0834 NC_008340.1 944951 945376 D PFAM: UspA domain protein; KEGG: vch:VC0428 hypothetical protein; UspA domain-containing protein 944951..945376 Alkalilimnicola ehrlichii MLHE-1 4268260 YP_741679.1 CDS Mlg_0835 NC_008340.1 945428 947152 D TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: csa:Csal_0980 choline/carnitine/betaine transport; choline/carnitine/betaine transporter 945428..947152 Alkalilimnicola ehrlichii MLHE-1 4268261 YP_741680.1 CDS Mlg_0836 NC_008340.1 947249 947971 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(947249..947971) Alkalilimnicola ehrlichii MLHE-1 4270773 YP_741681.1 CDS Mlg_0837 NC_008340.1 947985 949874 R PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase KEGG: csa:Csal_0978 cyclic nucleotide-binding domain (cNMP-BD) protein; cyclic nucleotide-binding protein complement(947985..949874) Alkalilimnicola ehrlichii MLHE-1 4270774 YP_741682.1 CDS Mlg_0838 NC_008340.1 950150 952243 D PFAM: Rhs element Vgr protein; KEGG: eca:ECA2104 VgrG protein; Rhs element Vgr protein 950150..952243 Alkalilimnicola ehrlichii MLHE-1 4270775 YP_741683.1 CDS Mlg_0839 NC_008340.1 952246 952767 D KEGG: pst:PSPTO2537 hypothetical protein; hypothetical protein 952246..952767 Alkalilimnicola ehrlichii MLHE-1 4270776 YP_741684.1 CDS Mlg_0840 NC_008340.1 952764 955370 D hypothetical protein 952764..955370 Alkalilimnicola ehrlichii MLHE-1 4270777 YP_741685.1 CDS Mlg_0841 NC_008340.1 955373 956389 D KEGG: xoo:XOO3467 hypothetical protein; hypothetical protein 955373..956389 Alkalilimnicola ehrlichii MLHE-1 4270778 YP_741686.1 CDS Mlg_0842 NC_008340.1 956389 958446 D hypothetical protein 956389..958446 Alkalilimnicola ehrlichii MLHE-1 4270779 YP_741687.1 CDS Mlg_0843 NC_008340.1 958467 959801 D hypothetical protein 958467..959801 Alkalilimnicola ehrlichii MLHE-1 4270780 YP_741688.1 CDS Mlg_0844 NC_008340.1 959928 960353 D hypothetical protein 959928..960353 Alkalilimnicola ehrlichii MLHE-1 4270781 YP_741689.1 CDS rplU NC_008340.1 960947 961261 D PFAM: ribosomal protein L21; KEGG: vvy:VV0470 ribosomal protein L21; 50S ribosomal protein L21 960947..961261 Alkalilimnicola ehrlichii MLHE-1 4270782 YP_741690.1 CDS rpmA NC_008340.1 961281 961541 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 961281..961541 Alkalilimnicola ehrlichii MLHE-1 4270783 YP_741691.1 CDS Mlg_0847 NC_008340.1 961637 962713 D PFAM: GTP-binding protein, HSR1-related; GTP1/OBG sub domain protein; KEGG: csa:Csal_0476 GTP1/OBG subdomain; GTP1/OBG domain-containing protein 961637..962713 Alkalilimnicola ehrlichii MLHE-1 4270784 YP_741692.1 CDS Mlg_0848 NC_008340.1 962710 963852 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 962710..963852 Alkalilimnicola ehrlichii MLHE-1 4270785 YP_741693.1 CDS Mlg_0849 NC_008340.1 963994 964260 R PFAM: ribosomal protein S20; KEGG: pfo:Pfl_4855 ribosomal protein S20p; 30S ribosomal protein S20 complement(963994..964260) Alkalilimnicola ehrlichii MLHE-1 4270786 YP_741694.1 CDS Mlg_0850 NC_008340.1 964399 965967 D TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; KEGG: noc:Noc_3038 virulence factor MviN-like; integral membrane protein MviN 964399..965967 Alkalilimnicola ehrlichii MLHE-1 4270787 YP_741695.1 CDS Mlg_0851 NC_008340.1 966012 966980 D TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: sgl:SG0413 riboflavin biosynthesis protein; riboflavin kinase/FMN adenylyltransferase 966012..966980 Alkalilimnicola ehrlichii MLHE-1 4270788 YP_741696.1 CDS ileS NC_008340.1 966977 969802 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 966977..969802 Alkalilimnicola ehrlichii MLHE-1 4270789 YP_741697.1 CDS Mlg_0853 NC_008340.1 969813 970280 D TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8, signal peptidase II; KEGG: pcr:Pcryo_0401 lipoprotein signal peptidase; signal peptidase II 969813..970280 Alkalilimnicola ehrlichii MLHE-1 4270790 YP_741698.1 CDS Mlg_0854 NC_008340.1 970351 971301 D KEGG: ppu:PP0606 hydroxymethylbutenyl pyrophosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 970351..971301 Alkalilimnicola ehrlichii MLHE-1 4268498 YP_741699.1 CDS Mlg_0855 NC_008340.1 971804 972184 R KEGG: csa:Csal_0493 methylation; pilus assembly protein complement(971804..972184) Alkalilimnicola ehrlichii MLHE-1 4268499 YP_741700.1 CDS Mlg_0856 NC_008340.1 972453 972947 D KEGG: pol:Bpro_2876 methylation; pilus assembly protein 972453..972947 Alkalilimnicola ehrlichii MLHE-1 4268500 YP_741701.1 CDS Mlg_0857 NC_008340.1 973036 973494 D TIGRFAM: general secretion pathway protein H; KEGG: rme:Rmet_5685 pilus assembly protein FimT; general secretion pathway protein H 973036..973494 Alkalilimnicola ehrlichii MLHE-1 4268501 YP_741702.1 CDS Mlg_0858 NC_008340.1 973491 974003 D TIGRFAM: type IV pilus modification protein PilV; KEGG: noc:Noc_2271 type IV fimbrial biogenesis protein PilV; type IV pilus modification protein PilV 973491..974003 Alkalilimnicola ehrlichii MLHE-1 4268502 YP_741703.1 CDS Mlg_0859 NC_008340.1 974013 974651 D TIGRFAM: Prepilin-type cleavage/methylation-like; KEGG: pst:PSPTO0813 type IV pilus assembly protein PilW; prepilin-type cleavage/methylation-like protein 974013..974651 Alkalilimnicola ehrlichii MLHE-1 4268503 YP_741704.1 CDS Mlg_0860 NC_008340.1 974664 975881 D KEGG: noc:Noc_2273 type IV pilus assembly protein PilX; Tfp pilus assembly protein PilX-like protein 974664..975881 Alkalilimnicola ehrlichii MLHE-1 4268504 YP_741705.1 CDS Mlg_0861 NC_008340.1 975929 977143 D Tfp pilus assembly protein PilX-like protein 975929..977143 Alkalilimnicola ehrlichii MLHE-1 4268505 YP_741706.1 CDS psd NC_008340.1 977153 978019 R catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase complement(977153..978019) Alkalilimnicola ehrlichii MLHE-1 4268506 YP_741707.1 CDS Mlg_0863 NC_008340.1 978105 978428 D PFAM: DNA polymerase, beta domain protein region; KEGG: eba:ebA5915 hypothetical protein; DNA polymerase subunit beta 978105..978428 Alkalilimnicola ehrlichii MLHE-1 4268507 YP_741708.1 CDS Mlg_0864 NC_008340.1 978425 978943 D KEGG: cch:Cag_0152 hypothetical protein; hypothetical protein 978425..978943 Alkalilimnicola ehrlichii MLHE-1 4268508 YP_741709.1 CDS Mlg_0865 NC_008340.1 978931 979554 R PFAM: electron transport protein SCO1/SenC; KEGG: son:SO4615 SCO1/SenC family protein; electron transport protein SCO1/SenC complement(978931..979554) Alkalilimnicola ehrlichii MLHE-1 4268509 YP_741710.1 CDS Mlg_0866 NC_008340.1 979652 980581 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 979652..980581 Alkalilimnicola ehrlichii MLHE-1 4268510 YP_741711.1 CDS Mlg_0867 NC_008340.1 980603 981886 D PFAM: TPR repeat-containing protein; peptidase M48, Ste24p; SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_0402 peptidase M48, Ste24p; peptidase M48, Ste24p 980603..981886 Alkalilimnicola ehrlichii MLHE-1 4268511 YP_741712.1 CDS Mlg_0868 NC_008340.1 982409 983026 R KEGG: noc:Noc_0799 hypothetical protein; hypothetical protein complement(982409..983026) Alkalilimnicola ehrlichii MLHE-1 4268512 YP_741713.1 CDS Mlg_0869 NC_008340.1 983133 985169 R KEGG: noc:Noc_0798 hypothetical protein; hypothetical protein complement(983133..985169) Alkalilimnicola ehrlichii MLHE-1 4268513 YP_741714.1 CDS Mlg_0870 NC_008340.1 985292 987127 D TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; KEGG: mca:MCA1868 ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase RecQ 985292..987127 Alkalilimnicola ehrlichii MLHE-1 4268514 YP_741715.1 CDS Mlg_0871 NC_008340.1 987140 987457 D hypothetical protein 987140..987457 Alkalilimnicola ehrlichii MLHE-1 4269692 YP_741716.1 CDS Mlg_0872 NC_008340.1 987478 988404 R PFAM: Auxin Efflux Carrier; KEGG: rru:Rru_A3182 auxin efflux carrier; auxin efflux carrier complement(987478..988404) Alkalilimnicola ehrlichii MLHE-1 4269693 YP_741717.1 CDS Mlg_0873 NC_008340.1 988516 990789 R TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: csa:Csal_2409 TRAP transporter, 4TM/12TM fusion protein; TRAP transporter, 4TM/12TM fusion protein complement(988516..990789) Alkalilimnicola ehrlichii MLHE-1 4269694 YP_741718.1 CDS Mlg_0874 NC_008340.1 990946 991932 R TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: csa:Csal_2408 TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein complement(990946..991932) Alkalilimnicola ehrlichii MLHE-1 4269695 YP_741719.1 CDS Mlg_0875 NC_008340.1 992236 993687 R PFAM: aldehyde dehydrogenase; KEGG: eba:ebA2996 succinate-semialdehyde dehydrogenase; succinate-semialdehyde dehydrogenase (NAD(P)(+)) complement(992236..993687) Alkalilimnicola ehrlichii MLHE-1 4269696 YP_741720.1 CDS Mlg_0876 NC_008340.1 993753 994745 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: sma:SAV5233 NAD-binding protein; D-isomer specific 2-hydroxyacid dehydrogenase complement(993753..994745) Alkalilimnicola ehrlichii MLHE-1 4269697 YP_741721.1 CDS Mlg_0877 NC_008340.1 994941 996194 D PFAM: aminotransferase, class I and II; KEGG: tko:TK2268 aspartate aminotransferase; aminotransferase 994941..996194 Alkalilimnicola ehrlichii MLHE-1 4269698 YP_741722.1 CDS Mlg_0878 NC_008340.1 996548 998869 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: eli:ELI_04405 outer membrane receptor protein; TonB-dependent receptor 996548..998869 Alkalilimnicola ehrlichii MLHE-1 4269699 YP_741723.1 CDS Mlg_0879 NC_008340.1 999037 999504 D TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: hch:HCH_04946 uncharacterized protein, possibly involved in aromatic compounds catabolism; hypothetical protein 999037..999504 Alkalilimnicola ehrlichii MLHE-1 4269700 YP_741724.1 CDS Mlg_0880 NC_008340.1 999501 999953 D PFAM: thioesterase superfamily protein; KEGG: ppu:PP4180 hypothetical protein; thioesterase 999501..999953 Alkalilimnicola ehrlichii MLHE-1 4269701 YP_741725.1 CDS Mlg_0881 NC_008340.1 1000035 1000658 R PFAM: protein of unknown function DUF1043; KEGG: sgl:SG0214 hypothetical protein; hypothetical protein complement(1000035..1000658) Alkalilimnicola ehrlichii MLHE-1 4269702 YP_741726.1 CDS Mlg_0882 NC_008340.1 1000747 1003920 R PFAM: acriflavin resistance protein; KEGG: ana:alr5294 probable cation efflux system protein; acriflavin resistance protein complement(1000747..1003920) Alkalilimnicola ehrlichii MLHE-1 4269703 YP_741727.1 CDS Mlg_0883 NC_008340.1 1003917 1005008 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA7103 HlyD-like secretion protein; RND family efflux transporter MFP subunit complement(1003917..1005008) Alkalilimnicola ehrlichii MLHE-1 4269704 YP_741728.1 CDS Mlg_0884 NC_008340.1 1005144 1005497 D PFAM: ribosomal protein S16; KEGG: csa:Csal_3016 ribosomal protein S16; 30S ribosomal protein S16 1005144..1005497 Alkalilimnicola ehrlichii MLHE-1 4269705 YP_741729.1 CDS Mlg_0885 NC_008340.1 1005514 1006026 D TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: noc:Noc_2259 16S rRNA processing protein RimM; 16S rRNA-processing protein RimM 1005514..1006026 Alkalilimnicola ehrlichii MLHE-1 4269706 YP_741730.1 CDS trmD NC_008340.1 1006023 1006826 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1006023..1006826 Alkalilimnicola ehrlichii MLHE-1 4269707 YP_741731.1 CDS rplS NC_008340.1 1006849 1007202 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1006849..1007202 Alkalilimnicola ehrlichii MLHE-1 4269708 YP_741732.1 CDS Mlg_0888 NC_008340.1 1007412 1007891 R PFAM: FlgN family protein; KEGG: hch:HCH_04722 flagella synthesis protein FlgN; FlgN family protein complement(1007412..1007891) Alkalilimnicola ehrlichii MLHE-1 4269709 YP_741733.1 CDS Mlg_0889 NC_008340.1 1007934 1008254 R PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: pae:PA3351 negative regulator of flagellin synthesis FlgM; anti-sigma-28 factor, FlgM complement(1007934..1008254) Alkalilimnicola ehrlichii MLHE-1 4269033 YP_741734.1 CDS Mlg_0890 NC_008340.1 1008406 1009122 R KEGG: noc:Noc_2683 flageller protein FlgA; flageller protein FlgA complement(1008406..1009122) Alkalilimnicola ehrlichii MLHE-1 4269034 YP_741735.1 CDS Mlg_0891 NC_008340.1 1009365 1010303 D PFAM: response regulator receiver; CheW domain protein; KEGG: pae:PA3349 probable chemotaxis protein; response regulator receiver modulated CheW protein 1009365..1010303 Alkalilimnicola ehrlichii MLHE-1 4269035 YP_741736.1 CDS Mlg_0892 NC_008340.1 1010362 1011189 D PFAM: MCP methyltransferase, CheR-type; Methyltransferase type 11; Methyltransferase type 12; KEGG: pae:PA3348 probable chemotaxis protein methyltransferase; chemotaxis protein CheR 1010362..1011189 Alkalilimnicola ehrlichii MLHE-1 4269036 YP_741737.1 CDS Mlg_0893 NC_008340.1 1011494 1011898 D TIGRFAM: flagellar basal-body rod protein FlgB; KEGG: noc:Noc_2378 flagellar basal-body rod protein FlgB; flagellar basal-body rod protein FlgB 1011494..1011898 Alkalilimnicola ehrlichii MLHE-1 4269037 YP_741738.1 CDS Mlg_0894 NC_008340.1 1011913 1012368 D TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cps:CPS_1478 flagellar basal-body rod protein FlgC; flagellar basal body rod protein FlgC 1011913..1012368 Alkalilimnicola ehrlichii MLHE-1 4269038 YP_741739.1 CDS Mlg_0895 NC_008340.1 1012419 1013087 D PFAM: flagellar hook capping protein; KEGG: hch:HCH_04480 flagellar hook capping protein; flagellar hook capping protein 1012419..1013087 Alkalilimnicola ehrlichii MLHE-1 4269039 YP_741740.1 CDS Mlg_0896 NC_008340.1 1013116 1014408 D PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: xcb:XC_2237 flagellar biosynthesis, hook protein; flagellar basal body FlaE domain-containing protein 1013116..1014408 Alkalilimnicola ehrlichii MLHE-1 4269040 YP_741741.1 CDS Mlg_0897 NC_008340.1 1014462 1015202 D TIGRFAM: flagellar basal-body rod protein FlgF; KEGG: noc:Noc_2374 protein of unknown function DUF1078; flagellar basal body rod protein FlgF 1014462..1015202 Alkalilimnicola ehrlichii MLHE-1 4269041 YP_741742.1 CDS Mlg_0898 NC_008340.1 1015644 1016429 D TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: noc:Noc_2373 hypothetical protein; flagellar basal-body rod protein FlgG 1015644..1016429 Alkalilimnicola ehrlichii MLHE-1 4269042 YP_741743.1 CDS Mlg_0899 NC_008340.1 1016441 1017115 D PFAM: flagellar L-ring protein; KEGG: pae:PA1083 flagellar L-ring protein precursor FlgH; flagellar L-ring protein 1016441..1017115 Alkalilimnicola ehrlichii MLHE-1 4269043 YP_741744.1 CDS flgI NC_008340.1 1017134 1018264 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring biosynthesis protein FlgA 1017134..1018264 Alkalilimnicola ehrlichii MLHE-1 4269044 YP_741745.1 CDS Mlg_0901 NC_008340.1 1018274 1019389 D KEGG: hch:HCH_04474 muramidase (flagellum-specific); TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; flagellar rod assembly protein/muramidase FlgJ 1018274..1019389 Alkalilimnicola ehrlichii MLHE-1 4269045 YP_741746.1 CDS Mlg_0902 NC_008340.1 1019474 1021561 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: noc:Noc_2369 hypothetical protein; flagellar hook-associated protein FlgK 1019474..1021561 Alkalilimnicola ehrlichii MLHE-1 4269046 YP_741747.1 CDS Mlg_0903 NC_008340.1 1021568 1022794 D TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: noc:Noc_2368 flagellin-like; flagellar hook-associated protein 3 1021568..1022794 Alkalilimnicola ehrlichii MLHE-1 4269047 YP_741748.1 CDS Mlg_0904 NC_008340.1 1022791 1023456 R PFAM: HhH-GPD family protein; SMART: iron-sulfur cluster loop; KEGG: det:DET1612 DNA repair protein, HhH-GPD family; HhH-GPD family protein complement(1022791..1023456) Alkalilimnicola ehrlichii MLHE-1 4269048 YP_741749.1 CDS Mlg_0905 NC_008340.1 1023465 1024223 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: csa:Csal_1856 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1023465..1024223) Alkalilimnicola ehrlichii MLHE-1 4269049 YP_741750.1 CDS Mlg_0906 NC_008340.1 1024237 1025091 R PFAM: Squalene/phytoene synthase; KEGG: noc:Noc_1042 squalene/phytoene synthase; squalene/phytoene synthase complement(1024237..1025091) Alkalilimnicola ehrlichii MLHE-1 4269291 YP_741751.1 CDS Mlg_0907 NC_008340.1 1025247 1026548 D KEGG: csa:Csal_1112 hypothetical protein; hypothetical protein 1025247..1026548 Alkalilimnicola ehrlichii MLHE-1 4269292 YP_741752.1 CDS Mlg_0908 NC_008340.1 1026548 1028590 D PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: csa:Csal_1111 peptidase S15; peptidase S15 1026548..1028590 Alkalilimnicola ehrlichii MLHE-1 4269293 YP_741753.1 CDS Mlg_0909 NC_008340.1 1028587 1029255 R KEGG: rme:Rmet_0710 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase complement(1028587..1029255) Alkalilimnicola ehrlichii MLHE-1 4269294 YP_741754.1 CDS Mlg_0910 NC_008340.1 1029255 1029998 R KEGG: csa:Csal_1858 ubiquinone biosynthesis O-methyltransferase; TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; 3-demethylubiquinone-9 3-methyltransferase complement(1029255..1029998) Alkalilimnicola ehrlichii MLHE-1 4269295 YP_741755.1 CDS Mlg_0911 NC_008340.1 1029991 1031319 R Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; N-ethylammeline chlorohydrolase complement(1029991..1031319) Alkalilimnicola ehrlichii MLHE-1 4269296 YP_741756.1 CDS Mlg_0912 NC_008340.1 1031543 1032064 D PFAM: shikimate kinase; KEGG: sde:Sde_1230 TonB-dependent receptor; shikimate kinase 1031543..1032064 Alkalilimnicola ehrlichii MLHE-1 4269297 YP_741757.1 CDS Mlg_0913 NC_008340.1 1032152 1033192 D KEGG: noc:Noc_2293 initiation factor 2B alpha/beta/delta; TIGRFAM: eIF-2B alpha/beta/delta-related uncharacterized proteins; PFAM: initiation factor 2B related; translation initiation factor 2B subunit I 1032152..1033192 Alkalilimnicola ehrlichii MLHE-1 4269298 YP_741758.1 CDS Mlg_0914 NC_008340.1 1033246 1034658 D catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 1033246..1034658 Alkalilimnicola ehrlichii MLHE-1 4269299 YP_741759.1 CDS Mlg_0915 NC_008340.1 1034776 1035429 R PFAM: OmpW family protein; KEGG: bbr:BB4842 outer membrane protein; OmpW family protein complement(1034776..1035429) Alkalilimnicola ehrlichii MLHE-1 4269300 YP_741760.1 CDS Mlg_0916 NC_008340.1 1035536 1035913 R PFAM: protein of unknown function DUF107; KEGG: pab:PAB1932 nodulation protein NfeD; hypothetical protein complement(1035536..1035913) Alkalilimnicola ehrlichii MLHE-1 4269301 YP_741761.1 CDS Mlg_0917 NC_008340.1 1036064 1037752 D PFAM: gamma-glutamyltranspeptidase; KEGG: pol:Bpro_1819 gamma-glutamyltransferase; gamma-glutamyltransferase 2 1036064..1037752 Alkalilimnicola ehrlichii MLHE-1 4269302 YP_741762.1 CDS Mlg_0918 NC_008340.1 1037790 1039838 R TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ape:APE2542 hypothetical protein; TRAP transporter, 4TM/12TM fusion protein complement(1037790..1039838) Alkalilimnicola ehrlichii MLHE-1 4269303 YP_741763.1 CDS Mlg_0919 NC_008340.1 1039927 1040961 R KEGG: ape:APE2545 hypothetical protein; hypothetical protein complement(1039927..1040961) Alkalilimnicola ehrlichii MLHE-1 4269304 YP_741764.1 CDS Mlg_0920 NC_008340.1 1041134 1042384 R PFAM: EAL domain protein; KEGG: lpn:lpg0113 signal transduction protein containing EAL and modified HD-GYP domains; diguanylate phosphodiesterase complement(1041134..1042384) Alkalilimnicola ehrlichii MLHE-1 4269305 YP_741765.1 CDS Mlg_0921 NC_008340.1 1043595 1045319 R PFAM: transporter-associated region; sodium/hydrogen exchanger; KEGG: hch:HCH_03500 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain; sodium/hydrogen exchanger complement(1043595..1045319) Alkalilimnicola ehrlichii MLHE-1 4269306 YP_741766.1 CDS Mlg_0922 NC_008340.1 1045468 1046097 D PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: sgl:SG2303 peptidyl-prolyl cis-trans isomerase A; peptidylprolyl isomerase 1045468..1046097 Alkalilimnicola ehrlichii MLHE-1 4269307 YP_741767.1 CDS Mlg_0923 NC_008340.1 1046242 1048830 D TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: mca:MCA1421 DNA gyrase, A subunit; DNA gyrase subunit A 1046242..1048830 Alkalilimnicola ehrlichii MLHE-1 4269308 YP_741768.1 CDS Mlg_0924 NC_008340.1 1048901 1049983 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1048901..1049983 Alkalilimnicola ehrlichii MLHE-1 4268211 YP_741769.1 CDS Mlg_0925 NC_008340.1 1049995 1051164 D PFAM: amino acid-binding ACT domain protein; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: noc:Noc_0173 D-isomer specific 2-hydroxyacid dehydrogenase; D-3-phosphoglycerate dehydrogenase 1049995..1051164 Alkalilimnicola ehrlichii MLHE-1 4268212 YP_741770.1 CDS Mlg_0926 NC_008340.1 1051178 1052281 D TIGRFAM: chorismate mutase; PFAM: prephenate dehydratase; Chorismate mutase; amino acid-binding ACT domain protein; KEGG: noc:Noc_0174 chorismate mutase; chorismate mutase 1051178..1052281 Alkalilimnicola ehrlichii MLHE-1 4268213 YP_741771.1 CDS Mlg_0927 NC_008340.1 1052309 1053448 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1052309..1053448 Alkalilimnicola ehrlichii MLHE-1 4268214 YP_741772.1 CDS Mlg_0928 NC_008340.1 1053445 1054335 D PFAM: Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: mca:MCA1416 prephenate dehydrogenase; prephenate dehydrogenase 1053445..1054335 Alkalilimnicola ehrlichii MLHE-1 4268215 YP_741773.1 CDS Mlg_0929 NC_008340.1 1054351 1055691 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1054351..1055691 Alkalilimnicola ehrlichii MLHE-1 4268216 YP_741774.1 CDS Mlg_0930 NC_008340.1 1055688 1056392 D KEGG: ilo:IL1356 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase 1055688..1056392 Alkalilimnicola ehrlichii MLHE-1 4268217 YP_741775.1 CDS rpsA NC_008340.1 1056514 1058199 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1056514..1058199 Alkalilimnicola ehrlichii MLHE-1 4268218 YP_741776.1 CDS ihfB NC_008340.1 1058329 1058631 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 1058329..1058631 Alkalilimnicola ehrlichii MLHE-1 4268219 YP_741777.1 CDS Mlg_0933 NC_008340.1 1058668 1058961 D KEGG: lpp:lpp1377 hypothetical protein; hypothetical protein 1058668..1058961 Alkalilimnicola ehrlichii MLHE-1 4268220 YP_741778.1 CDS Mlg_0934 NC_008340.1 1058971 1060140 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: noc:Noc_0185 TPR repeat protein; hypothetical protein 1058971..1060140 Alkalilimnicola ehrlichii MLHE-1 4268221 YP_741779.1 CDS Mlg_0935 NC_008340.1 1060144 1060851 D KEGG: tbd:Tbd_0960 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine-5'-phosphate decarboxylase 1060144..1060851 Alkalilimnicola ehrlichii MLHE-1 4268222 YP_741780.1 CDS Mlg_0936 NC_008340.1 1060851 1061840 D catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 1060851..1061840 Alkalilimnicola ehrlichii MLHE-1 4268223 YP_741781.1 CDS Mlg_0937 NC_008340.1 1061845 1062543 R KEGG: bxe:Bxe_B2003 hypothetical protein; hypothetical protein complement(1061845..1062543) Alkalilimnicola ehrlichii MLHE-1 4268224 YP_741782.1 CDS Mlg_0938 NC_008340.1 1062547 1063710 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: lpf:lpl2012 hypothetical protein; cation diffusion facilitator family transporter complement(1062547..1063710) Alkalilimnicola ehrlichii MLHE-1 4268225 YP_741783.1 CDS Mlg_0939 NC_008340.1 1063707 1064183 R PFAM: ferric-uptake regulator; KEGG: bba:Bd1656 ferric uptake regulator-like protein; ferric uptake regulator family protein complement(1063707..1064183) Alkalilimnicola ehrlichii MLHE-1 4268226 YP_741784.1 CDS Mlg_0940 NC_008340.1 1064216 1064521 R PFAM: protein of unknown function DUF1244; KEGG: hch:HCH_04373 hypothetical protein; hypothetical protein complement(1064216..1064521) Alkalilimnicola ehrlichii MLHE-1 4268227 YP_741785.1 CDS Mlg_0941 NC_008340.1 1065082 1066890 R TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: noc:Noc_0720 GTP-binding protein TypA; GTP-binding protein TypA complement(1065082..1066890) Alkalilimnicola ehrlichii MLHE-1 4269675 YP_741786.1 CDS Mlg_0942 NC_008340.1 1067075 1067959 D PFAM: PP-loop domain protein; KEGG: noc:Noc_1596 ATPase; PP-loop domain-containing protein 1067075..1067959 Alkalilimnicola ehrlichii MLHE-1 4269676 YP_741787.1 CDS Mlg_0943 NC_008340.1 1067994 1069439 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: tbd:Tbd_2697 type I secretion outer membrane protein, TolC; TolC family type I secretion outer membrane protein complement(1067994..1069439) Alkalilimnicola ehrlichii MLHE-1 4269677 YP_741788.1 CDS Mlg_0944 NC_008340.1 1069509 1070330 R similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; GTP cyclohydrolase complement(1069509..1070330) Alkalilimnicola ehrlichii MLHE-1 4269678 YP_741789.1 CDS Mlg_0945 NC_008340.1 1070393 1071313 R PFAM: Polyprenyl synthetase; KEGG: mca:MCA0818 geranyltranstransferase; farnesyl-diphosphate synthase complement(1070393..1071313) Alkalilimnicola ehrlichii MLHE-1 4269679 YP_741790.1 CDS Mlg_0946 NC_008340.1 1071273 1071530 R TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: cbu:CBU_0468 exodeoxyribonuclease VII, small subunit; exodeoxyribonuclease VII small subunit complement(1071273..1071530) Alkalilimnicola ehrlichii MLHE-1 4269680 YP_741791.1 CDS Mlg_0947 NC_008340.1 1071703 1073595 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1071703..1073595 Alkalilimnicola ehrlichii MLHE-1 4269681 YP_741792.1 CDS Mlg_0948 NC_008340.1 1079650 1079946 R TIGRFAM: CRISPR-associated protein Cas2; KEGG: mca:MCA0929.1 CRISPR-associated protein Cas2; CRISPR-associated Cas2 family protein complement(1079650..1079946) Alkalilimnicola ehrlichii MLHE-1 4269682 YP_741793.1 CDS Mlg_0949 NC_008340.1 1079918 1080814 R TIGRFAM: CRISPR-associated protein Cas1; KEGG: mca:MCA0930 CRISPR-associated protein Cas1; CRISPR-associated Cas1 family protein complement(1079918..1080814) Alkalilimnicola ehrlichii MLHE-1 4269683 YP_741794.1 CDS Mlg_0951 NC_008340.1 1081520 1082248 R TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: mca:MCA0932 CRISPR-associated CT1976 family protein; CRISPR-associated Cas5 family protein complement(1081520..1082248) Alkalilimnicola ehrlichii MLHE-1 4269685 YP_741795.1 CDS Mlg_0952 NC_008340.1 1082248 1083405 R TIGRFAM: CRISPR-associated protein, Cse4 family; KEGG: mca:MCA0933 CRISPR-associated CT1975 family protein; CRISPR-associated Cse4 family protein complement(1082248..1083405) Alkalilimnicola ehrlichii MLHE-1 4269686 YP_741796.1 CDS Mlg_0953 NC_008340.1 1083416 1083934 R TIGRFAM: CRISPR-associated protein, Cse2 family; KEGG: mca:MCA0934 CRISPR-associated protein; CRISPR-associated Cse2 family protein complement(1083416..1083934) Alkalilimnicola ehrlichii MLHE-1 4269687 YP_741797.1 CDS Mlg_0954 NC_008340.1 1083921 1085468 R TIGRFAM: CRISPR-associated protein, Cse1 family; KEGG: mca:MCA0935 CRISPR-associated protein; CRISPR-associated Cse1 family protein complement(1083921..1085468) Alkalilimnicola ehrlichii MLHE-1 4269688 YP_741798.1 CDS Mlg_0955 NC_008340.1 1085465 1088080 R TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: mca:MCA0936 CRISPR-associated helicase Cas3; CRISPR-associated helicase Cas3 complement(1085465..1088080) Alkalilimnicola ehrlichii MLHE-1 4269689 YP_741799.1 CDS Mlg_0956 NC_008340.1 1088907 1091465 R KEGG: neu:NE0074 alpha-glucan phosphorylase, TIGRFAM: alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35; alpha-glucan phosphorylase complement(1088907..1091465) Alkalilimnicola ehrlichii MLHE-1 4269690 YP_741800.1 CDS glgA NC_008340.1 1091479 1092930 R catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase complement(1091479..1092930) Alkalilimnicola ehrlichii MLHE-1 4269691 YP_741801.1 CDS Mlg_0958 NC_008340.1 1092927 1095014 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme complement(1092927..1095014) Alkalilimnicola ehrlichii MLHE-1 4270428 YP_741802.1 CDS glgC NC_008340.1 1095295 1096563 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 1095295..1096563 Alkalilimnicola ehrlichii MLHE-1 4270429 YP_741803.1 CDS Mlg_0960 NC_008340.1 1096550 1098304 D PFAM: glycoside hydrolase, family 57; KEGG: tbd:Tbd_2060 glycosyl hydrolase 57; glycoside hydrolase 1096550..1098304 Alkalilimnicola ehrlichii MLHE-1 4270430 YP_741804.1 CDS Mlg_0961 NC_008340.1 1098301 1099776 D amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 1098301..1099776 Alkalilimnicola ehrlichii MLHE-1 4270431 YP_741805.1 CDS Mlg_0962 NC_008340.1 1099929 1100216 R hypothetical protein complement(1099929..1100216) Alkalilimnicola ehrlichii MLHE-1 4270432 YP_741806.1 CDS Mlg_0963 NC_008340.1 1101145 1101444 D KEGG: noc:Noc_0832 hypothetical protein; hypothetical protein 1101145..1101444 Alkalilimnicola ehrlichii MLHE-1 4270433 YP_741807.1 CDS Mlg_0964 NC_008340.1 1101716 1102174 D KEGG: tcx:Tcr_0149 hypothetical protein; hypothetical protein 1101716..1102174 Alkalilimnicola ehrlichii MLHE-1 4270434 YP_741808.1 CDS Mlg_0965 NC_008340.1 1102242 1102646 D KEGG: vpa:VPA0323 hypothetical protein; hypothetical protein 1102242..1102646 Alkalilimnicola ehrlichii MLHE-1 4270435 YP_741809.1 CDS Mlg_0966 NC_008340.1 1102695 1103363 D PFAM: O-methyltransferase, family 3; KEGG: ava:Ava_1652 O-methyltransferase, family 3; caffeoyl-CoA O-methyltransferase 1102695..1103363 Alkalilimnicola ehrlichii MLHE-1 4270436 YP_741810.1 CDS Mlg_0967 NC_008340.1 1103407 1104183 D KEGG: nmu:Nmul_A1801 hypothetical protein; hypothetical protein 1103407..1104183 Alkalilimnicola ehrlichii MLHE-1 4270437 YP_741811.1 CDS Mlg_0968 NC_008340.1 1104188 1104910 R PFAM: Lytic transglycosylase, catalytic; KEGG: bsu:BG13596 similar to lytic transglycosylase; lytic transglycosylase catalytic subunit complement(1104188..1104910) Alkalilimnicola ehrlichii MLHE-1 4270438 YP_741812.1 CDS Mlg_0969 NC_008340.1 1105176 1107425 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1105176..1107425 Alkalilimnicola ehrlichii MLHE-1 4270439 YP_741813.1 CDS Mlg_0970 NC_008340.1 1107444 1108241 R PFAM: ABC-3 protein; KEGG: dar:Daro_0201 ABC-type Mn2+/Zn2+ transport systems permease components-like protein; ABC-3 protein complement(1107444..1108241) Alkalilimnicola ehrlichii MLHE-1 4270440 YP_741814.1 CDS Mlg_0971 NC_008340.1 1108238 1108813 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dar:Daro_0200 ABC transporter related; ABC transporter-like protein complement(1108238..1108813) Alkalilimnicola ehrlichii MLHE-1 4270441 YP_741815.1 CDS Mlg_0972 NC_008340.1 1108820 1109698 R PFAM: periplasmic solute binding protein; KEGG: tbd:Tbd_2538 zinc/manganese transport system substrate-binding protein; periplasmic solute binding protein complement(1108820..1109698) Alkalilimnicola ehrlichii MLHE-1 4270442 YP_741816.1 CDS Mlg_0973 NC_008340.1 1109788 1111143 R KEGG: tbd:Tbd_2537 hypothetical protein; hypothetical protein complement(1109788..1111143) Alkalilimnicola ehrlichii MLHE-1 4270443 YP_741817.1 CDS Mlg_0974 NC_008340.1 1111491 1111976 D PFAM: flagellar basal body-associated protein FliL; KEGG: noc:Noc_2166 flagellar basal body-associated protein FliL; flagellar basal body-associated protein FliL 1111491..1111976 Alkalilimnicola ehrlichii MLHE-1 4270444 YP_741818.1 CDS Mlg_0975 NC_008340.1 1111988 1113175 D PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: hch:HCH_05181 flagellar motor switch protein FliM; flagellar motor switch protein FliM 1111988..1113175 Alkalilimnicola ehrlichii MLHE-1 4269326 YP_741819.1 CDS Mlg_0976 NC_008340.1 1113172 1113852 D TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: sde:Sde_2174 surface presentation of antigens (SpoA) protein; flagellar motor switch protein FliN 1113172..1113852 Alkalilimnicola ehrlichii MLHE-1 4269327 YP_741820.1 CDS Mlg_0977 NC_008340.1 1113852 1114340 D PFAM: flagellar biosynthesis protein, FliO; KEGG: tcx:Tcr_0739 flagellar biosynthesis protein, FliO; flagellar biosynthesis protein, FliO 1113852..1114340 Alkalilimnicola ehrlichii MLHE-1 4269328 YP_741821.1 CDS fliP NC_008340.1 1114337 1115089 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1114337..1115089 Alkalilimnicola ehrlichii MLHE-1 4269329 YP_741822.1 CDS Mlg_0979 NC_008340.1 1115136 1115405 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: tcx:Tcr_0741 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 1115136..1115405 Alkalilimnicola ehrlichii MLHE-1 4269330 YP_741823.1 CDS Mlg_0980 NC_008340.1 1115431 1116213 D TIGRFAM: flagellar biosynthetic protein FliR; PFAM: type III secretion system inner membrane R protein; KEGG: hch:HCH_05176 flagellar biosynthesis pathway, component FliR; flagellar biosynthetic protein FliR 1115431..1116213 Alkalilimnicola ehrlichii MLHE-1 4269331 YP_741824.1 CDS Mlg_0981 NC_008340.1 1116334 1117506 D TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: sde:Sde_2169 flagellar biosynthetic protein FlhB; flagellar biosynthetic protein FlhB 1116334..1117506 Alkalilimnicola ehrlichii MLHE-1 4269332 YP_741825.1 CDS Mlg_0982 NC_008340.1 1117577 1119697 D TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: pae:PA1452 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA 1117577..1119697 Alkalilimnicola ehrlichii MLHE-1 4269333 YP_741826.1 CDS Mlg_0983 NC_008340.1 1119716 1121116 D PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; KEGG: pha:PSHAa0807 flagellar biosynthesis protein; GTP-binding signal recognition particle 1119716..1121116 Alkalilimnicola ehrlichii MLHE-1 4269334 YP_741827.1 CDS Mlg_0984 NC_008340.1 1121103 1121984 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: noc:Noc_2156 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 1121103..1121984 Alkalilimnicola ehrlichii MLHE-1 4269335 YP_741828.1 CDS Mlg_0985 NC_008340.1 1121981 1122709 D TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: pae:PA1455 sigma factor FliA; RNA polymerase, sigma 28 subunit 1121981..1122709 Alkalilimnicola ehrlichii MLHE-1 4269336 YP_741829.1 CDS Mlg_0986 NC_008340.1 1122761 1123156 D PFAM: response regulator receiver; KEGG: vpa:VP2231 chemotaxis protein CheY; response regulator receiver protein 1122761..1123156 Alkalilimnicola ehrlichii MLHE-1 4269337 YP_741830.1 CDS Mlg_0987 NC_008340.1 1123161 1123922 D PFAM: Chemotaxis phosphatase, CheZ; KEGG: sdn:Sden_1345 chemotaxis phosphatase, CheZ; chemotaxis protein CheZ 1123161..1123922 Alkalilimnicola ehrlichii MLHE-1 4269338 YP_741831.1 CDS Mlg_0988 NC_008340.1 1123992 1126196 D PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: pae:PA1458 probable two-component sensor; CheA signal transduction histidine kinases 1123992..1126196 Alkalilimnicola ehrlichii MLHE-1 4269339 YP_741832.1 CDS Mlg_0989 NC_008340.1 1126250 1127422 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1126250..1127422 Alkalilimnicola ehrlichii MLHE-1 4269340 YP_741833.1 CDS Mlg_0990 NC_008340.1 1127495 1128292 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: hch:HCH_05163 ATPase involved in chromosome partitioning; cobyrinic acid a,c-diamide synthase 1127495..1128292 Alkalilimnicola ehrlichii MLHE-1 4269341 YP_741834.1 CDS Mlg_0991 NC_008340.1 1128285 1129157 D PFAM: CheW domain protein; KEGG: ppu:PP4333 CheW domain protein; chemotaxis protein CheW 1128285..1129157 Alkalilimnicola ehrlichii MLHE-1 4269342 YP_741835.1 CDS Mlg_0992 NC_008340.1 1129263 1129751 D PFAM: CheW domain protein; KEGG: sde:Sde_2155 flagellar FliF M-ring protein; chemotaxis protein CheW 1129263..1129751 Alkalilimnicola ehrlichii MLHE-1 4269343 YP_741836.1 CDS Mlg_0993 NC_008340.1 1129892 1130164 D TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; KEGG: ppu:PP1813 ComEA-related protein; helix-hairpin-helix repeat-containing competence protein ComEA 1129892..1130164 Alkalilimnicola ehrlichii MLHE-1 4268361 YP_741837.1 CDS fabG NC_008340.1 1130249 1130992 R catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(1130249..1130992) Alkalilimnicola ehrlichii MLHE-1 4268362 YP_741838.1 CDS dinG NC_008340.1 1131118 1133244 D helicase involved in DNA repair and perhaps also replication; ATP-dependent DNA helicase DinG 1131118..1133244 Alkalilimnicola ehrlichii MLHE-1 4268363 YP_741839.1 CDS Mlg_0996 NC_008340.1 1133248 1133700 R hypothetical protein complement(1133248..1133700) Alkalilimnicola ehrlichii MLHE-1 4268364 YP_741840.1 CDS Mlg_0997 NC_008340.1 1133727 1134083 R PFAM: DsrC family protein; KEGG: tbd:Tbd_2480 sulfite reductase; DsrC family protein complement(1133727..1134083) Alkalilimnicola ehrlichii MLHE-1 4268365 YP_741841.1 CDS Mlg_0998 NC_008340.1 1134097 1134507 R KEGG: rfr:Rfer_2344 hypothetical protein; hypothetical protein complement(1134097..1134507) Alkalilimnicola ehrlichii MLHE-1 4268366 YP_741842.1 CDS Mlg_0999 NC_008340.1 1134522 1135304 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: hch:HCH_04007 parvulin-like peptidyl-prolyl isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(1134522..1135304) Alkalilimnicola ehrlichii MLHE-1 4268367 YP_741843.1 CDS Mlg_1000 NC_008340.1 1135365 1136060 R TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; KEGG: csa:Csal_1333 respiratory nitrate reductase, gamma subunit; respiratory nitrate reductase gamma subunit complement(1135365..1136060) Alkalilimnicola ehrlichii MLHE-1 4268368 YP_741844.1 CDS Mlg_1001 NC_008340.1 1136079 1136774 R TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; KEGG: hch:HCH_04009 nitrate reductase molybdenum cofactor assembly chaperone; respiratory nitrate reductase chaperone NarJ complement(1136079..1136774) Alkalilimnicola ehrlichii MLHE-1 4268369 YP_741845.1 CDS Mlg_1002 NC_008340.1 1136771 1138354 R TIGRFAM: nitrate reductase, beta subunit; KEGG: bms:BRA0298 respiratory nitrate reductase, beta subunit; respiratory nitrate reductase subunit beta complement(1136771..1138354) Alkalilimnicola ehrlichii MLHE-1 4268370 YP_741846.1 CDS Mlg_1003 NC_008340.1 1138351 1142109 R KEGG: csa:Csal_1330 nitrate reductase, alpha subunit; TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; respiratory nitrate reductase alpha subunit apoprotein complement(1138351..1142109) Alkalilimnicola ehrlichii MLHE-1 4268371 YP_741847.1 CDS Mlg_1004 NC_008340.1 1142208 1143863 R KEGG: eba:ebA6288 nitrate/nitrite antiporter; nitrate/nitrite antiporter complement(1142208..1143863) Alkalilimnicola ehrlichii MLHE-1 4268372 YP_741848.1 CDS Mlg_1005 NC_008340.1 1144073 1146007 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: tbd:Tbd_1400 periplasmic sensor signal transduction histidine kinase; nitrate/nitrite-specific signal transduction histidine kinase NarQ 1144073..1146007 Alkalilimnicola ehrlichii MLHE-1 4268373 YP_741849.1 CDS Mlg_1006 NC_008340.1 1145991 1146650 D PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: pae:PA3879 two-component response regulator NarL; LuxR family transcriptional regulator 1145991..1146650 Alkalilimnicola ehrlichii MLHE-1 4268374 YP_741850.1 CDS Mlg_1007 NC_008340.1 1146695 1148203 R PFAM: major facilitator superfamily MFS_1; KEGG: par:Psyc_0601 MFS nitrate/nitrite transporter; major facilitator transporter complement(1146695..1148203) Alkalilimnicola ehrlichii MLHE-1 4268375 YP_741851.1 CDS Mlg_1008 NC_008340.1 1148246 1148704 R PFAM: UspA domain protein; KEGG: sai:Saci_1640 universal stress protein; UspA domain-containing protein complement(1148246..1148704) Alkalilimnicola ehrlichii MLHE-1 4268376 YP_741852.1 CDS Mlg_1009 NC_008340.1 1149199 1149927 D KEGG: pae:PA5139 hypothetical protein; hypothetical protein 1149199..1149927 Alkalilimnicola ehrlichii MLHE-1 4268377 YP_741853.1 CDS Mlg_1010 NC_008340.1 1150035 1150589 D KEGG: mag:amb3448 hypothetical protein; hypothetical protein 1150035..1150589 Alkalilimnicola ehrlichii MLHE-1 4270039 YP_741854.1 CDS Mlg_1011 NC_008340.1 1150591 1150998 D KEGG: mag:amb3449 hypothetical protein; hypothetical protein 1150591..1150998 Alkalilimnicola ehrlichii MLHE-1 4270040 YP_741855.1 CDS Mlg_1012 NC_008340.1 1151006 1151893 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb4415 FOG: GGDEF domain; diguanylate cyclase 1151006..1151893 Alkalilimnicola ehrlichii MLHE-1 4270041 YP_741856.1 CDS Mlg_1013 NC_008340.1 1151893 1153563 D PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mag:amb0187 serine phosphatase RsbU; serine phosphatase 1151893..1153563 Alkalilimnicola ehrlichii MLHE-1 4270042 YP_741857.1 CDS Mlg_1014 NC_008340.1 1153884 1155350 D KEGG: mca:MCA0291 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; 2-nitropropane dioxygenase, NPD; inosine-5'-monophosphate dehydrogenase 1153884..1155350 Alkalilimnicola ehrlichii MLHE-1 4270043 YP_741858.1 CDS Mlg_1015 NC_008340.1 1155437 1156192 R PFAM: protein of unknown function DUF125, transmembrane; KEGG: csa:Csal_2162 protein of unknown function DUF125, transmembrane; hypothetical protein complement(1155437..1156192) Alkalilimnicola ehrlichii MLHE-1 4270044 YP_741859.1 CDS guaA NC_008340.1 1156389 1157966 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 1156389..1157966 Alkalilimnicola ehrlichii MLHE-1 4270045 YP_741860.1 CDS Mlg_1017 NC_008340.1 1157971 1158465 D PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: bxe:Bxe_A1920 cytidine/deoxycytidylate deaminase, zinc-binding; tRNA-adenosine deaminase 1157971..1158465 Alkalilimnicola ehrlichii MLHE-1 4270046 YP_741861.1 CDS Mlg_1018 NC_008340.1 1158462 1159946 R YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; transglycosylase complement(1158462..1159946) Alkalilimnicola ehrlichii MLHE-1 4270047 YP_741862.1 CDS Mlg_1019 NC_008340.1 1160239 1160553 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: csa:Csal_2488 antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 1160239..1160553 Alkalilimnicola ehrlichii MLHE-1 4270049 YP_741863.1 CDS Mlg_1020 NC_008340.1 1160528 1161634 R PFAM: histone deacetylase superfamily; KEGG: bur:Bcep18194_A4392 histone deacetylase superfamily; histone deacetylase superfamily protein complement(1160528..1161634) Alkalilimnicola ehrlichii MLHE-1 4270050 YP_741864.1 CDS Mlg_1021 NC_008340.1 1161852 1162208 D PFAM: protein of unknown function DUF454; KEGG: rru:Rru_A2502 protein of unknown function DUF454; hypothetical protein 1161852..1162208 Alkalilimnicola ehrlichii MLHE-1 4270051 YP_741865.1 CDS Mlg_1022 NC_008340.1 1162249 1164417 D PFAM: GCN5-related N-acetyltransferase; protein of unknown function DUF699, ATPase ; domain of unknown function DUF1726; KEGG: noc:Noc_2706 hypothetical protein; hypothetical protein 1162249..1164417 Alkalilimnicola ehrlichii MLHE-1 4270052 YP_741866.1 CDS Mlg_1023 NC_008340.1 1164448 1166115 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1279 NADH/ubiquinone/plastoquinone (complex I); NADH/ubiquinone/plastoquinone (complex I) 1164448..1166115 Alkalilimnicola ehrlichii MLHE-1 4270053 YP_741867.1 CDS Mlg_1024 NC_008340.1 1166132 1167631 R PFAM: protein of unknown function DUF344; KEGG: dar:Daro_3585 protein of unknown function DUF344; polyphosphate:AMP phosphotransferase complement(1166132..1167631) Alkalilimnicola ehrlichii MLHE-1 4270054 YP_741868.1 CDS Mlg_1025 NC_008340.1 1168302 1171046 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; KEGG: noc:Noc_1406 cation transport ATPase; HAD superfamily P-type ATPase 1168302..1171046 Alkalilimnicola ehrlichii MLHE-1 4270055 YP_741869.1 CDS Mlg_1026 NC_008340.1 1171086 1171763 R PFAM: DSBA oxidoreductase; KEGG: atc:AGR_C_3262 hypothetical protein; DSBA oxidoreductase complement(1171086..1171763) Alkalilimnicola ehrlichii MLHE-1 4269767 YP_741870.1 CDS Mlg_1027 NC_008340.1 1171847 1173487 D KEGG: sme:SMc01665 hypothetical protein; hypothetical protein 1171847..1173487 Alkalilimnicola ehrlichii MLHE-1 4269768 YP_741871.1 CDS Mlg_1028 NC_008340.1 1173506 1175434 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; KEGG: rpc:RPC_3606 sigma54 specific transcriptional regulator with GAF sensor, fis family; Fis family transcriptional regulator complement(1173506..1175434) Alkalilimnicola ehrlichii MLHE-1 4269769 YP_741872.1 CDS Mlg_1029 NC_008340.1 1175817 1176323 R KEGG: rpc:RPC_3603 acetone carboxylase gamma subunit; acetone carboxylase subunit gamma complement(1175817..1176323) Alkalilimnicola ehrlichii MLHE-1 4269770 YP_741873.1 CDS Mlg_1030 NC_008340.1 1176391 1178730 R PFAM: Hydantoinase B/oxoprolinase; KEGG: rpc:RPC_3604 hydantoinase B/oxoprolinase; acetone carboxylase subunit alpha complement(1176391..1178730) Alkalilimnicola ehrlichii MLHE-1 4269771 YP_741874.1 CDS Mlg_1031 NC_008340.1 1178787 1180940 R PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: rpc:RPC_3605 hydantoinase/oxoprolinase; acetone carboxylase subunit beta complement(1178787..1180940) Alkalilimnicola ehrlichii MLHE-1 4269772 YP_741875.1 CDS Mlg_1032 NC_008340.1 1181168 1181560 D PFAM: glutaredoxin; KEGG: tbd:Tbd_0167 glutaredoxin family protein; glutaredoxin 1181168..1181560 Alkalilimnicola ehrlichii MLHE-1 4269773 YP_741876.1 CDS Mlg_1033 NC_008340.1 1181637 1181981 D hypothetical protein 1181637..1181981 Alkalilimnicola ehrlichii MLHE-1 4269774 YP_741877.1 CDS Mlg_1034 NC_008340.1 1181989 1182549 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: pca:Pcar_0380 hypothetical protein; hypothetical protein complement(1181989..1182549) Alkalilimnicola ehrlichii MLHE-1 4269775 YP_741878.1 CDS Mlg_1035 NC_008340.1 1183364 1184632 R TIGRFAM: thiamine biosynthesis/tRNA modification protein ThiI; PFAM: thiamine biosynthesis protein; ExsB family protein; KEGG: mta:Moth_0198 thiamine biosynthesis; thiamine biosynthesis/tRNA modification protein ThiI complement(1183364..1184632) Alkalilimnicola ehrlichii MLHE-1 4269776 YP_741879.1 CDS Mlg_1036 NC_008340.1 1184735 1185031 R PFAM: phosphopantetheine-binding; KEGG: dps:DPPB41 predicted orf; phosphopantetheine-binding complement(1184735..1185031) Alkalilimnicola ehrlichii MLHE-1 4269777 YP_741880.1 CDS Mlg_1037 NC_008340.1 1185266 1187929 D PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: csa:Csal_1092 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 1185266..1187929 Alkalilimnicola ehrlichii MLHE-1 4269778 YP_741881.1 CDS Mlg_1038 NC_008340.1 1187932 1188372 R PFAM: protein of unknown function DUF123; KEGG: mca:MCA2572 hypothetical protein; hypothetical protein complement(1187932..1188372) Alkalilimnicola ehrlichii MLHE-1 4269779 YP_741882.1 CDS Mlg_1039 NC_008340.1 1188548 1190551 R TIGRFAM: TonB-dependent copper receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: cvi:CV0895 outer membrane protein OprC complement; TonB-dependent copper receptor complement(1188548..1190551) Alkalilimnicola ehrlichii MLHE-1 4269780 YP_741883.1 CDS Mlg_1040 NC_008340.1 1190833 1191276 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: csa:Csal_0685 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1190833..1191276 Alkalilimnicola ehrlichii MLHE-1 4269781 YP_741884.1 CDS Mlg_1041 NC_008340.1 1191381 1192292 D PFAM: periplasmic solute binding protein; KEGG: tfu:Tfu_1663 ABC transporter substrate-binding protein; periplasmic solute binding protein 1191381..1192292 Alkalilimnicola ehrlichii MLHE-1 4269782 YP_741885.1 CDS Mlg_1042 NC_008340.1 1192295 1193119 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: syw:SYNW1340 ABC transporter, ATP binding domain, possibly Mn transporter; ABC transporter-like protein 1192295..1193119 Alkalilimnicola ehrlichii MLHE-1 4269783 YP_741886.1 CDS Mlg_1043 NC_008340.1 1193119 1194057 D PFAM: ABC-3 protein; KEGG: bat:BAS2965 ABC transporter, permease; ABC-3 protein 1193119..1194057 Alkalilimnicola ehrlichii MLHE-1 4270516 YP_741887.1 CDS Mlg_1044 NC_008340.1 1194069 1195259 R PFAM: major facilitator superfamily MFS_1; KEGG: ilo:IL2408 permease of the major facilitator superfamily; major facilitator transporter complement(1194069..1195259) Alkalilimnicola ehrlichii MLHE-1 4270517 YP_741888.1 CDS Mlg_1045 NC_008340.1 1195795 1197279 R PFAM: protein of unknown function UPF0061; KEGG: rpd:RPD_2948 protein of unknown function UPF0061; hypothetical protein complement(1195795..1197279) Alkalilimnicola ehrlichii MLHE-1 4270518 YP_741889.1 CDS Mlg_1046 NC_008340.1 1197413 1198765 D PFAM: Lytic transglycosylase, catalytic; KEGG: pfo:Pfl_0998 lytic transglycosylase, catalytic; lytic transglycosylase catalytic subunit 1197413..1198765 Alkalilimnicola ehrlichii MLHE-1 4270519 YP_741890.1 CDS Mlg_1047 NC_008340.1 1198977 1217165 D KEGG: gsu:GSU1154 surface repeat protein; hypothetical protein 1198977..1217165 Alkalilimnicola ehrlichii MLHE-1 4270520 YP_741891.1 CDS Mlg_1048 NC_008340.1 1217162 1218847 D PFAM: Polypeptide-transport-associated domain protein, ShlB-type; KEGG: gsu:GSU1153 outer membrane protein, OMP85 family; polypeptide-transport-associated domain-containing protein 1217162..1218847 Alkalilimnicola ehrlichii MLHE-1 4270521 YP_741892.1 CDS Mlg_1049 NC_008340.1 1218945 1223327 D KEGG: gme:Gmet_1200 hypothetical protein; hypothetical protein 1218945..1223327 Alkalilimnicola ehrlichii MLHE-1 4270522 YP_741893.1 CDS Mlg_1050 NC_008340.1 1223369 1224148 R PFAM: metallophosphoesterase; KEGG: bte:BTH_II0558 serine/threonine protein phosphatase 1; metallophosphoesterase complement(1223369..1224148) Alkalilimnicola ehrlichii MLHE-1 4270523 YP_741894.1 CDS Mlg_1051 NC_008340.1 1224314 1224724 D hypothetical protein 1224314..1224724 Alkalilimnicola ehrlichii MLHE-1 4270524 YP_741895.1 CDS Mlg_1052 NC_008340.1 1224961 1226001 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_3525 diguanylate cyclase (GGDEF domain); diguanylate cyclase 1224961..1226001 Alkalilimnicola ehrlichii MLHE-1 4270525 YP_741896.1 CDS Mlg_1053 NC_008340.1 1225998 1227557 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; RNA-directed RNA polymerase, double-strand and positive-strand RNA virus; KEGG: xac:XAC1420 hypothetical protein; diguanylate cyclase complement(1225998..1227557) Alkalilimnicola ehrlichii MLHE-1 4270526 YP_741897.1 CDS Mlg_1055 NC_008340.1 1228251 1228688 R KEGG: plt:Plut_1002 hypothetical protein; hypothetical protein complement(1228251..1228688) Alkalilimnicola ehrlichii MLHE-1 4270528 YP_741898.1 CDS Mlg_1056 NC_008340.1 1228870 1229415 D PFAM: cytochrome B561; KEGG: rru:Rru_A3682 cytochrome b561; cytochrome B561 1228870..1229415 Alkalilimnicola ehrlichii MLHE-1 4270529 YP_741899.1 CDS Mlg_1057 NC_008340.1 1229387 1232494 R PFAM: acriflavin resistance protein; KEGG: hch:HCH_05479 cation/multidrug efflux pump; acriflavin resistance protein complement(1229387..1232494) Alkalilimnicola ehrlichii MLHE-1 4270530 YP_741900.1 CDS Mlg_1058 NC_008340.1 1232491 1233858 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: vfi:VF0297 acriflavin resistance periplasmic protein; RND family efflux transporter MFP subunit complement(1232491..1233858) Alkalilimnicola ehrlichii MLHE-1 4270531 YP_741901.1 CDS Mlg_1059 NC_008340.1 1233855 1234493 R PFAM: regulatory protein, TetR; KEGG: eba:ebA6247 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1233855..1234493) Alkalilimnicola ehrlichii MLHE-1 4270532 YP_741902.1 CDS Mlg_1060 NC_008340.1 1234768 1238481 D PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: mca:MCA0335 hypothetical protein; oxidoreductase FAD/NAD(P)-binding subunit 1234768..1238481 Alkalilimnicola ehrlichii MLHE-1 4270533 YP_741903.1 CDS Mlg_1061 NC_008340.1 1239341 1240735 D PFAM: phage integrase; KEGG: vpa:VP0380 integrase; phage integrase 1239341..1240735 Alkalilimnicola ehrlichii MLHE-1 4268982 YP_741904.1 CDS Mlg_1062 NC_008340.1 1241073 1241300 D PFAM: Prophage CP4-57 regulatory; KEGG: rpc:RPC_4521 phage transcriptional regulator, AlpA; phage transcriptional regulator, AlpA 1241073..1241300 Alkalilimnicola ehrlichii MLHE-1 4268983 YP_741905.1 CDS Mlg_1063 NC_008340.1 1241300 1244077 D KEGG: rsp:RSP_4122 hypothetical protein; hypothetical protein 1241300..1244077 Alkalilimnicola ehrlichii MLHE-1 4268984 YP_741906.1 CDS Mlg_1064 NC_008340.1 1244442 1244807 D hypothetical protein 1244442..1244807 Alkalilimnicola ehrlichii MLHE-1 4268985 YP_741907.1 CDS Mlg_1065 NC_008340.1 1244807 1245040 D hypothetical protein 1244807..1245040 Alkalilimnicola ehrlichii MLHE-1 4268986 YP_741908.1 CDS Mlg_1066 NC_008340.1 1245037 1246428 D hypothetical protein 1245037..1246428 Alkalilimnicola ehrlichii MLHE-1 4268987 YP_741909.1 CDS Mlg_1067 NC_008340.1 1246447 1246872 D hypothetical protein 1246447..1246872 Alkalilimnicola ehrlichii MLHE-1 4268988 YP_741910.1 CDS Mlg_1068 NC_008340.1 1246865 1247437 D hypothetical protein 1246865..1247437 Alkalilimnicola ehrlichii MLHE-1 4268989 YP_741911.1 CDS Mlg_1069 NC_008340.1 1248328 1248666 R hypothetical protein complement(1248328..1248666) Alkalilimnicola ehrlichii MLHE-1 4268991 YP_741912.1 CDS Mlg_1070 NC_008340.1 1248828 1249535 D PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: bmb:BruAb2_0899 NnrR, transcriptional regulator; Crp/Fnr family transcriptional regulator 1248828..1249535 Alkalilimnicola ehrlichii MLHE-1 4268992 YP_741913.1 CDS Mlg_1071 NC_008340.1 1249690 1250007 D PFAM: cytochrome c, class I; KEGG: noc:Noc_3049 cytochrome c, class I; cytochrome c, class I 1249690..1250007 Alkalilimnicola ehrlichii MLHE-1 4268993 YP_741914.1 CDS Mlg_1072 NC_008340.1 1250192 1250533 D KEGG: hch:HCH_01015 cytochrome c553; cytochrome c553 1250192..1250533 Alkalilimnicola ehrlichii MLHE-1 4268994 YP_741915.1 CDS Mlg_1073 NC_008340.1 1250565 1252703 D PFAM: FMN-binding domain protein; KEGG: hch:HCH_03389 regulator of nitric oxide reductase transcription; FMN-binding domain-containing protein 1250565..1252703 Alkalilimnicola ehrlichii MLHE-1 4268995 YP_741916.1 CDS Mlg_1074 NC_008340.1 1252757 1254679 D reduces nitrous oxide to nitrogen; nitrous-oxide reductase 1252757..1254679 Alkalilimnicola ehrlichii MLHE-1 4268996 YP_741917.1 CDS Mlg_1075 NC_008340.1 1254735 1256063 D PFAM: periplasmic copper-binding; SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: pae:PA3393 NosD protein; periplasmic copper-binding 1254735..1256063 Alkalilimnicola ehrlichii MLHE-1 4268997 YP_741918.1 CDS Mlg_1076 NC_008340.1 1256060 1256986 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cps:CPS_4734 copper ABC transporter, ATP-binding protein; ABC transporter-like protein 1256060..1256986 Alkalilimnicola ehrlichii MLHE-1 4270021 YP_741919.1 CDS Mlg_1077 NC_008340.1 1256983 1257810 D KEGG: hch:HCH_03385 ABC-type transport system involved in multi-copper enzyme maturation, permease component; multi-copper enzyme maturation ABC transporter permease 1256983..1257810 Alkalilimnicola ehrlichii MLHE-1 4270022 YP_741920.1 CDS Mlg_1078 NC_008340.1 1257820 1258401 D PFAM: NosL family protein; KEGG: pae:PA3396 NosL protein; NosL family protein 1257820..1258401 Alkalilimnicola ehrlichii MLHE-1 4270023 YP_741921.1 CDS Mlg_1079 NC_008340.1 1258401 1259153 D PFAM: phospholipase/Carboxylesterase; KEGG: bpe:BP2966 probable carboxylesterase; phospholipase/carboxylesterase 1258401..1259153 Alkalilimnicola ehrlichii MLHE-1 4270024 YP_741922.1 CDS Mlg_1080 NC_008340.1 1259187 1259801 D hypothetical protein 1259187..1259801 Alkalilimnicola ehrlichii MLHE-1 4270025 YP_741923.1 CDS Mlg_1081 NC_008340.1 1259824 1260369 D PFAM: NosL family protein; KEGG: pae:PA3396 NosL protein; NosL family protein 1259824..1260369 Alkalilimnicola ehrlichii MLHE-1 4270026 YP_741924.1 CDS Mlg_1082 NC_008340.1 1260429 1260803 D hypothetical protein 1260429..1260803 Alkalilimnicola ehrlichii MLHE-1 4270027 YP_741925.1 CDS Mlg_1083 NC_008340.1 1260921 1262930 R KEGG: mlo:mll7347 ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(1260921..1262930) Alkalilimnicola ehrlichii MLHE-1 4270028 YP_741926.1 CDS Mlg_1084 NC_008340.1 1262930 1263727 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll7349 ABC transporter binding protein; binding-protein-dependent transport systems inner membrane component complement(1262930..1263727) Alkalilimnicola ehrlichii MLHE-1 4270029 YP_741927.1 CDS Mlg_1085 NC_008340.1 1263729 1264685 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A0789 ABC oligopeptide/dipeptide transporter, innermembrane subunit; binding-protein-dependent transport systems inner membrane component complement(1263729..1264685) Alkalilimnicola ehrlichii MLHE-1 4270030 YP_741928.1 CDS Mlg_1086 NC_008340.1 1264706 1266277 R TIGRFAM: Twin-arginine translocation pathway signal; PFAM: extracellular solute-binding protein, family 5; KEGG: mlo:mll2276 oligopeptide binding protein of oligopeptide ABC transporter; extracellular solute-binding protein complement(1264706..1266277) Alkalilimnicola ehrlichii MLHE-1 4270031 YP_741929.1 CDS Mlg_1087 NC_008340.1 1266553 1267731 R PFAM: aminotransferase, class I and II; KEGG: hch:HCH_04972 aspartate/tyrosine/aromatic aminotransferase; aminotransferase complement(1266553..1267731) Alkalilimnicola ehrlichii MLHE-1 4270032 YP_741930.1 CDS Mlg_1088 NC_008340.1 1268146 1270173 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1268146..1270173 Alkalilimnicola ehrlichii MLHE-1 4270033 YP_741931.1 CDS Mlg_1089 NC_008340.1 1270228 1271100 D TIGRFAM: Pseudouridine synthase, Rsu; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: noc:Noc_1041 pseudouridine synthase, Rsu; ribosomal large subunit pseudouridine synthase B 1270228..1271100 Alkalilimnicola ehrlichii MLHE-1 4270034 YP_741932.1 CDS Mlg_1090 NC_008340.1 1271143 1271910 D PFAM: protein of unknown function DUF81; KEGG: pcr:Pcryo_2117 protein of unknown function DUF81; hypothetical protein 1271143..1271910 Alkalilimnicola ehrlichii MLHE-1 4270035 YP_741933.1 CDS Mlg_1091 NC_008340.1 1271930 1274236 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; Nitrate and nitrite sensing domain protein; KEGG: pca:Pcar_2558 signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like; diguanylate cyclase/phosphodiesterase complement(1271930..1274236) Alkalilimnicola ehrlichii MLHE-1 4270036 YP_741934.1 CDS Mlg_1092 NC_008340.1 1274353 1275285 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eba:ebA3580 nod factor export ATP-binding protein I; ABC transporter-like protein 1274353..1275285 Alkalilimnicola ehrlichii MLHE-1 4270037 YP_741935.1 CDS Mlg_1093 NC_008340.1 1275289 1276092 D TIGRFAM: ABC-2 type transporter, NodJ family; PFAM: ABC-2 type transporter; KEGG: rme:Rmet_2458 ABC-2 type transporter, NodJ family; ABC transporter 1275289..1276092 Alkalilimnicola ehrlichii MLHE-1 4270038 YP_741936.1 CDS Mlg_1094 NC_008340.1 1276114 1277427 R KEGG: tbd:Tbd_0829 hypothetical protein; hypothetical protein complement(1276114..1277427) Alkalilimnicola ehrlichii MLHE-1 4269801 YP_741937.1 CDS Mlg_1095 NC_008340.1 1277466 1278338 R KEGG: tbd:Tbd_0830 hypothetical protein; hypothetical protein complement(1277466..1278338) Alkalilimnicola ehrlichii MLHE-1 4269802 YP_741938.1 CDS Mlg_1096 NC_008340.1 1278355 1278981 R KEGG: csa:Csal_2070 SOS-response transcriptional repressor, LexA; TIGRFAM: LexA repressor; PFAM: peptidase S24, S26A and S26B; LexA DNA-binding domain protein; SOS-response transcriptional repressor, LexA complement(1278355..1278981) Alkalilimnicola ehrlichii MLHE-1 4269803 YP_741939.1 CDS Mlg_1097 NC_008340.1 1279186 1281393 D KEGG: pae:PA0934 GTP pyrophosphokinase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; (p)ppGpp synthetase I SpoT/RelA 1279186..1281393 Alkalilimnicola ehrlichii MLHE-1 4269804 YP_741940.1 CDS Mlg_1098 NC_008340.1 1281437 1283350 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: son:SO4053 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer complement(1281437..1283350) Alkalilimnicola ehrlichii MLHE-1 4269805 YP_741941.1 CDS Mlg_1099 NC_008340.1 1283605 1285695 D KEGG: gsu:GSU1927 sensory box/response regulator; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1283605..1285695 Alkalilimnicola ehrlichii MLHE-1 4269806 YP_741942.1 CDS Mlg_1100 NC_008340.1 1285718 1286803 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: psb:Psyr_3902 ABC transporter TobE; ABC transporter-like protein complement(1285718..1286803) Alkalilimnicola ehrlichii MLHE-1 4269807 YP_741943.1 CDS Mlg_1101 NC_008340.1 1286806 1287717 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(1286806..1287717) Alkalilimnicola ehrlichii MLHE-1 4269808 YP_741944.1 CDS Mlg_1102 NC_008340.1 1287740 1288924 R catalyzes the formation of N-acetyl-l-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine aminotransferase complement(1287740..1288924) Alkalilimnicola ehrlichii MLHE-1 4269809 YP_741945.1 CDS Mlg_1103 NC_008340.1 1289148 1289756 R PFAM: manganese and iron superoxide dismutase; KEGG: tcx:Tcr_0237 superoxide dismutase; superoxide dismutase complement(1289148..1289756) Alkalilimnicola ehrlichii MLHE-1 4269810 YP_741946.1 CDS Mlg_1104 NC_008340.1 1290016 1291551 D PFAM: Hydantoinase B/oxoprolinase; KEGG: pca:Pcar_3104 N-methylhydantoinase B; 5-oxoprolinase 1290016..1291551 Alkalilimnicola ehrlichii MLHE-1 4269811 YP_741947.1 CDS Mlg_1105 NC_008340.1 1291610 1292299 D TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: son:SO1558 phosphate regulon response regulator PhoB; two component transcriptional regulator 1291610..1292299 Alkalilimnicola ehrlichii MLHE-1 4269812 YP_741948.1 CDS Mlg_1106 NC_008340.1 1292300 1293631 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: pfo:Pfl_5607 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor signal transduction histidine kinase 1292300..1293631 Alkalilimnicola ehrlichii MLHE-1 4269813 YP_741949.1 CDS Mlg_1107 NC_008340.1 1293897 1294304 D KEGG: neu:NE1129 hypothetical protein; hypothetical protein 1293897..1294304 Alkalilimnicola ehrlichii MLHE-1 4269814 YP_741950.1 CDS Mlg_1108 NC_008340.1 1294330 1295484 D KEGG: neu:NE1130 hypothetical protein; hypothetical protein 1294330..1295484 Alkalilimnicola ehrlichii MLHE-1 4269815 YP_741951.1 CDS Mlg_1109 NC_008340.1 1295509 1298337 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-4 domain protein; KEGG: noc:Noc_0335 PAS sensor diguanylate cyclase/phosphodiesterase; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1295509..1298337 Alkalilimnicola ehrlichii MLHE-1 4269816 YP_741952.1 CDS Mlg_1110 NC_008340.1 1298348 1300456 R KEGG: bth:BT1890 hypothetical protein; hypothetical protein complement(1298348..1300456) Alkalilimnicola ehrlichii MLHE-1 4269817 YP_741953.1 CDS Mlg_1111 NC_008340.1 1300612 1300881 D hypothetical protein 1300612..1300881 Alkalilimnicola ehrlichii MLHE-1 4269835 YP_741954.1 CDS Mlg_1112 NC_008340.1 1301171 1302439 D KEGG: bja:bll8095 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase 1301171..1302439 Alkalilimnicola ehrlichii MLHE-1 4269836 YP_741955.1 CDS Mlg_1113 NC_008340.1 1302555 1303514 D TIGRFAM: phosphate binding protein; KEGG: son:SO1560 phosphate-binding protein; phosphate binding protein 1302555..1303514 Alkalilimnicola ehrlichii MLHE-1 4269837 YP_741956.1 CDS Mlg_1114 NC_008340.1 1303607 1304704 R PFAM: porin, Gram-negative type; KEGG: tbd:Tbd_0448 outer membrane protein (porin); porin complement(1303607..1304704) Alkalilimnicola ehrlichii MLHE-1 4269838 YP_741957.1 CDS Mlg_1115 NC_008340.1 1304884 1305636 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: bxe:Bxe_C0542 transcriptional regulator, Crp/Fnr family; Crp/Fnr family transcriptional regulator complement(1304884..1305636) Alkalilimnicola ehrlichii MLHE-1 4269839 YP_741958.1 CDS Mlg_1116 NC_008340.1 1305923 1307407 D KEGG: dar:Daro_2048 PAS:GGDEF; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 1305923..1307407 Alkalilimnicola ehrlichii MLHE-1 4269840 YP_741959.1 CDS Mlg_1117 NC_008340.1 1307473 1308054 D SMART: PAS domain containing protein; KEGG: gme:Gmet_0779 PAS/PAC sensor signal transduction histidine kinase; PAS/PAC sensor protein 1307473..1308054 Alkalilimnicola ehrlichii MLHE-1 4269841 YP_741960.1 CDS Mlg_1118 NC_008340.1 1308051 1310609 D TIGRFAM: PAS sensor protein; PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; PAS fold-4 domain protein; KEGG: gme:Gmet_0780 MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor 1308051..1310609 Alkalilimnicola ehrlichii MLHE-1 4269842 YP_741961.1 CDS Mlg_1119 NC_008340.1 1311257 1311571 D PFAM: transport-associated; KEGG: dar:Daro_2047 transport-associated; transport-associated 1311257..1311571 Alkalilimnicola ehrlichii MLHE-1 4269843 YP_741962.1 CDS Mlg_1121 NC_008340.1 1312090 1314324 D KEGG: pae:PA2624 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent, monomeric type; isocitrate dehydrogenase, NADP-dependent 1312090..1314324 Alkalilimnicola ehrlichii MLHE-1 4269845 YP_741963.1 CDS Mlg_1122 NC_008340.1 1314395 1314643 R hypothetical protein complement(1314395..1314643) Alkalilimnicola ehrlichii MLHE-1 4269846 YP_741964.1 CDS Mlg_1123 NC_008340.1 1314633 1315634 R PFAM: Death-on-curing protein; KEGG: noc:Noc_1805 death-on-curing protein; death-on-curing protein complement(1314633..1315634) Alkalilimnicola ehrlichii MLHE-1 4269847 YP_741965.1 CDS Mlg_1124 NC_008340.1 1315823 1318204 R SMART: AAA ATPase; KEGG: csa:Csal_1077 hypothetical protein; ATPase AAA complement(1315823..1318204) Alkalilimnicola ehrlichii MLHE-1 4269848 YP_741966.1 CDS Mlg_1125 NC_008340.1 1318201 1318572 R KEGG: bbr:BB1852 hypothetical protein; hypothetical protein complement(1318201..1318572) Alkalilimnicola ehrlichii MLHE-1 4269849 YP_741967.1 CDS Mlg_1126 NC_008340.1 1318597 1318806 R KEGG: csa:Csal_0087 type III restriction enzyme, res subunit; hypothetical protein complement(1318597..1318806) Alkalilimnicola ehrlichii MLHE-1 4269850 YP_741968.1 CDS Mlg_1127 NC_008340.1 1318796 1319302 R PFAM: OsmC family protein; KEGG: rpa:RPA2621 hypothetical protein; OsmC family protein complement(1318796..1319302) Alkalilimnicola ehrlichii MLHE-1 4269851 YP_741969.1 CDS Mlg_1129 NC_008340.1 1319824 1321512 R PFAM: transposase, IS4 family protein; KEGG: eba:ebA575 transposase, IS4 family; transposase, IS4 family protein complement(1319824..1321512) Alkalilimnicola ehrlichii MLHE-1 4269624 YP_741970.1 CDS Mlg_1130 NC_008340.1 1321557 1322156 R PFAM: NERD domain protein; KEGG: noc:Noc_0649 DNA topoisomerase I; NERD domain-containing protein complement(1321557..1322156) Alkalilimnicola ehrlichii MLHE-1 4269625 YP_741971.1 CDS Mlg_1131 NC_008340.1 1322690 1323583 R KEGG: vvu:VV12414 hypothetical protein; hypothetical protein complement(1322690..1323583) Alkalilimnicola ehrlichii MLHE-1 4269626 YP_741972.1 CDS Mlg_1132 NC_008340.1 1323659 1324309 R KEGG: pst:PSPTO0582 hypothetical protein; hypothetical protein complement(1323659..1324309) Alkalilimnicola ehrlichii MLHE-1 4269627 YP_741973.1 CDS Mlg_1134 NC_008340.1 1325259 1326170 R PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat; Sel1 domain-containing protein complement(1325259..1326170) Alkalilimnicola ehrlichii MLHE-1 4269629 YP_741974.1 CDS Mlg_1135 NC_008340.1 1326308 1328623 D PFAM: binding-protein-dependent transport systems inner membrane component; SMART: WD-40 repeat protein; KEGG: noc:Noc_2398 ABC transporter, inner membrane subunit; binding-protein-dependent transport systems inner membrane component 1326308..1328623 Alkalilimnicola ehrlichii MLHE-1 4269630 YP_741975.1 CDS Mlg_1136 NC_008340.1 1328693 1330360 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA5367 phosphate transport system permease; phosphate ABC transporter, inner membrane subunit PstA 1328693..1330360 Alkalilimnicola ehrlichii MLHE-1 4269631 YP_741976.1 CDS Mlg_1137 NC_008340.1 1330449 1331306 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 1330449..1331306 Alkalilimnicola ehrlichii MLHE-1 4269632 YP_741977.1 CDS Mlg_1138 NC_008340.1 1331574 1332296 D TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: noc:Noc_2395 phosphate transport system protein, PhoU; phosphate uptake regulator PhoU 1331574..1332296 Alkalilimnicola ehrlichii MLHE-1 4269633 YP_741978.1 CDS Mlg_1139 NC_008340.1 1332466 1333476 R KEGG: pfo:Pfl_2628 hypothetical protein; hypothetical protein complement(1332466..1333476) Alkalilimnicola ehrlichii MLHE-1 4269634 YP_741979.1 CDS Mlg_1140 NC_008340.1 1333535 1335151 R KEGG: pfo:Pfl_2629 hypothetical protein; hypothetical protein complement(1333535..1335151) Alkalilimnicola ehrlichii MLHE-1 4269635 YP_741980.1 CDS Mlg_1141 NC_008340.1 1335156 1336169 R KEGG: pfo:Pfl_2625 hypothetical protein; hypothetical protein complement(1335156..1336169) Alkalilimnicola ehrlichii MLHE-1 4269636 YP_741981.1 CDS Mlg_1142 NC_008340.1 1336220 1337359 R KEGG: pfo:Pfl_2629 hypothetical protein; hypothetical protein complement(1336220..1337359) Alkalilimnicola ehrlichii MLHE-1 4269637 YP_741982.1 CDS Mlg_1143 NC_008340.1 1337415 1339508 R KEGG: pfo:Pfl_2629 hypothetical protein; hypothetical protein complement(1337415..1339508) Alkalilimnicola ehrlichii MLHE-1 4269638 YP_741983.1 CDS Mlg_1144 NC_008340.1 1339505 1340296 R KEGG: pfo:Pfl_2630 hypothetical protein; hypothetical protein complement(1339505..1340296) Alkalilimnicola ehrlichii MLHE-1 4269639 YP_741984.1 CDS Mlg_1145 NC_008340.1 1340275 1342395 R PFAM: Rhs element Vgr protein; KEGG: eca:ECA2104 VgrG protein; Rhs element Vgr protein complement(1340275..1342395) Alkalilimnicola ehrlichii MLHE-1 4269640 YP_741985.1 CDS Mlg_1146 NC_008340.1 1342527 1343135 R hypothetical protein complement(1342527..1343135) Alkalilimnicola ehrlichii MLHE-1 4270652 YP_741986.1 CDS Mlg_1147 NC_008340.1 1343299 1344093 R KEGG: cgl:NCgl1354 TPR-repeat-containing protein; hypothetical protein complement(1343299..1344093) Alkalilimnicola ehrlichii MLHE-1 4270653 YP_741987.1 CDS Mlg_1148 NC_008340.1 1344200 1344943 D PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: eba:ebA4468 DNA-binding response regulator OmpR; two component transcriptional regulator 1344200..1344943 Alkalilimnicola ehrlichii MLHE-1 4270654 YP_741988.1 CDS Mlg_1149 NC_008340.1 1344943 1346307 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: eba:ebA4466 predicted histidine kinase-like ATPase; periplasmic sensor signal transduction histidine kinase 1344943..1346307 Alkalilimnicola ehrlichii MLHE-1 4270655 YP_741989.1 CDS Mlg_1150 NC_008340.1 1346364 1346918 D PFAM: membrane-flanked domain; KEGG: sde:Sde_3048 hypothetical protein; membrane-flanked domain-containing protein 1346364..1346918 Alkalilimnicola ehrlichii MLHE-1 4270656 YP_741990.1 CDS Mlg_1151 NC_008340.1 1346908 1348509 D PFAM: membrane-flanked domain; KEGG: sde:Sde_3047 serine/threonine protein kinase; membrane-flanked domain-containing protein 1346908..1348509 Alkalilimnicola ehrlichii MLHE-1 4270657 YP_741991.1 CDS Mlg_1152 NC_008340.1 1348524 1349978 R PFAM: chemotaxis sensory transducer; KEGG: bxe:Bxe_A1954 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1348524..1349978) Alkalilimnicola ehrlichii MLHE-1 4270658 YP_741992.1 CDS Mlg_1153 NC_008340.1 1350000 1351424 R PFAM: chemotaxis sensory transducer; KEGG: bxe:Bxe_A1954 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1350000..1351424) Alkalilimnicola ehrlichii MLHE-1 4270659 YP_741993.1 CDS Mlg_1154 NC_008340.1 1351843 1354173 D KEGG: hch:HCH_06250 penicillin-binding protein 1B; TIGRFAM: penicillin-binding protein 1B; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; penicillin-binding protein 1B 1351843..1354173 Alkalilimnicola ehrlichii MLHE-1 4270660 YP_741994.1 CDS Mlg_1155 NC_008340.1 1354230 1354727 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: psp:PSPPH_0869 hypothetical protein; TPR repeat-containing protein 1354230..1354727 Alkalilimnicola ehrlichii MLHE-1 4270661 YP_741995.1 CDS Mlg_1156 NC_008340.1 1354724 1356673 D SMART: helicase c2; KEGG: noc:Noc_1364 helicase C2; helicase c2 1354724..1356673 Alkalilimnicola ehrlichii MLHE-1 4270662 YP_741996.1 CDS Mlg_1157 NC_008340.1 1356657 1357055 D KEGG: sdy:SDY_3469 hypothetical protein; hypothetical protein 1356657..1357055 Alkalilimnicola ehrlichii MLHE-1 4270663 YP_741997.1 CDS Mlg_1158 NC_008340.1 1357091 1358179 R KEGG: aba:Acid345_0200 hypothetical protein; hypothetical protein complement(1357091..1358179) Alkalilimnicola ehrlichii MLHE-1 4270664 YP_741998.1 CDS Mlg_1159 NC_008340.1 1358249 1358677 D SMART: Mov34/MPN/PAD-1 family protein; KEGG: syf:Synpcc7942_0159 Mov34/MPN/PAD-1; Mov34/MPN/PAD-1 family protein 1358249..1358677 Alkalilimnicola ehrlichii MLHE-1 4270665 YP_741999.1 CDS Mlg_1160 NC_008340.1 1358659 1360101 D ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 1358659..1360101 Alkalilimnicola ehrlichii MLHE-1 4270666 YP_742000.1 CDS Mlg_1161 NC_008340.1 1360165 1360446 R KEGG: dar:Daro_0835 hypothetical protein; hypothetical protein complement(1360165..1360446) Alkalilimnicola ehrlichii MLHE-1 4270667 YP_742001.1 CDS Mlg_1162 NC_008340.1 1360587 1361474 R KEGG: bpa:BPP4036 cytochrome c; cytochrome c complement(1360587..1361474) Alkalilimnicola ehrlichii MLHE-1 4270668 YP_742002.1 CDS Mlg_1163 NC_008340.1 1361485 1361934 R PFAM: cytochrome c, class II; KEGG: rru:Rru_A2256 cytochrome c, class II; cytochrome c, class II complement(1361485..1361934) Alkalilimnicola ehrlichii MLHE-1 4270669 YP_742003.1 CDS Mlg_1164 NC_008340.1 1362178 1362780 D KEGG: noc:Noc_0119 hypothetical protein; hypothetical protein 1362178..1362780 Alkalilimnicola ehrlichii MLHE-1 4269103 YP_742004.1 CDS Mlg_1165 NC_008340.1 1362948 1363391 D KEGG: cvi:CV3473 hypothetical protein; hypothetical protein 1362948..1363391 Alkalilimnicola ehrlichii MLHE-1 4269104 YP_742005.1 CDS Mlg_1166 NC_008340.1 1363402 1364685 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: vpa:VP2536 hemolysin; hypothetical protein complement(1363402..1364685) Alkalilimnicola ehrlichii MLHE-1 4269105 YP_742006.1 CDS Mlg_1167 NC_008340.1 1364689 1365147 R PFAM: Cupin 2, conserved barrel domain protein; KEGG: rru:Rru_A2000 hypothetical protein; cupin complement(1364689..1365147) Alkalilimnicola ehrlichii MLHE-1 4269106 YP_742007.1 CDS Mlg_1168 NC_008340.1 1365149 1366246 R PFAM: ribulose bisphosphate carboxylase, large chain; KEGG: rru:Rru_A1998 ribulose-bisphosphate carboxylase-like protein; rubisco-like protein; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit complement(1365149..1366246) Alkalilimnicola ehrlichii MLHE-1 4269107 YP_742008.1 CDS Mlg_1169 NC_008340.1 1366243 1367139 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: pae:PA2628 hypothetical protein; hypothetical protein complement(1366243..1367139) Alkalilimnicola ehrlichii MLHE-1 4269108 YP_742009.1 CDS Mlg_1170 NC_008340.1 1367132 1368229 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: xac:XAC1488 sensor histidine kinase; diguanylate cyclase complement(1367132..1368229) Alkalilimnicola ehrlichii MLHE-1 4269109 YP_742010.1 CDS Mlg_1171 NC_008340.1 1368226 1368531 R hypothetical protein complement(1368226..1368531) Alkalilimnicola ehrlichii MLHE-1 4269110 YP_742011.1 CDS Mlg_1172 NC_008340.1 1368656 1369141 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 1368656..1369141 Alkalilimnicola ehrlichii MLHE-1 4269111 YP_742012.1 CDS Mlg_1173 NC_008340.1 1369166 1369576 D PFAM: RNA-binding S4 domain protein; KEGG: pol:Bpro_2006 RNA-binding S4; RNA-binding S4 domain-containing protein 1369166..1369576 Alkalilimnicola ehrlichii MLHE-1 4269112 YP_742013.1 CDS Mlg_1174 NC_008340.1 1369597 1369980 D hypothetical protein 1369597..1369980 Alkalilimnicola ehrlichii MLHE-1 4269113 YP_742014.1 CDS Mlg_1175 NC_008340.1 1370677 1373754 R KEGG: tbd:Tbd_0828 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha complement(1370677..1373754) Alkalilimnicola ehrlichii MLHE-1 4269114 YP_742015.1 CDS Mlg_1176 NC_008340.1 1373849 1375087 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: hch:HCH_04222 permease of the major facilitator superfamily; Bcr/CflA subfamily drug resistance transporter complement(1373849..1375087) Alkalilimnicola ehrlichii MLHE-1 4269115 YP_742016.1 CDS Mlg_1177 NC_008340.1 1375173 1376477 D PFAM: PEP-utilizing enzyme; KEGG: cvi:CV0558 probable phosphoenolpyruvate-protein phosphotransferase; phosphoenolpyruvate--protein phosphotransferase 1375173..1376477 Alkalilimnicola ehrlichii MLHE-1 4269116 YP_742017.1 CDS Mlg_1178 NC_008340.1 1376515 1376727 R hypothetical protein complement(1376515..1376727) Alkalilimnicola ehrlichii MLHE-1 4269117 YP_742018.1 CDS Mlg_1179 NC_008340.1 1376738 1377961 R PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: sme:SMb21550 hypothetical protein; hypothetical protein complement(1376738..1377961) Alkalilimnicola ehrlichii MLHE-1 4269118 YP_742019.1 CDS Mlg_1180 NC_008340.1 1378040 1378999 R PFAM: Rhodanese domain protein; KEGG: sme:SMb21549 exported sulfurtransferase, rhodanese protein; thiosulfate sulfurtransferase complement(1378040..1378999) Alkalilimnicola ehrlichii MLHE-1 4269119 YP_742020.1 CDS Mlg_1181 NC_008340.1 1379257 1380666 D Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1379257..1380666 Alkalilimnicola ehrlichii MLHE-1 4270316 YP_742021.1 CDS Mlg_1182 NC_008340.1 1380734 1381207 R PFAM: cyclic nucleotide-binding; KEGG: sco:SCO7310 regulatory protein; cyclic nucleotide-binding protein complement(1380734..1381207) Alkalilimnicola ehrlichii MLHE-1 4270317 YP_742022.1 CDS Mlg_1183 NC_008340.1 1381479 1381784 D PFAM: protein of unknown function DUF77; KEGG: gsu:GSU1562 conserved hypothetical protein TIGR00106; hypothetical protein 1381479..1381784 Alkalilimnicola ehrlichii MLHE-1 4270318 YP_742023.1 CDS Mlg_1184 NC_008340.1 1381781 1382188 D KEGG: hch:HCH_00195 hypothetical protein; hypothetical protein 1381781..1382188 Alkalilimnicola ehrlichii MLHE-1 4270319 YP_742024.1 CDS Mlg_1185 NC_008340.1 1382497 1383867 D PFAM: Radical SAM domain protein; KEGG: ilo:IL1509 lysine 2,3-aminomutase related protein enzyme; L-lysine 2,3-aminomutase 1382497..1383867 Alkalilimnicola ehrlichii MLHE-1 4270320 YP_742025.1 CDS Mlg_1186 NC_008340.1 1383991 1385115 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: rru:Rru_A2095 secretion protein HlyD; RND family efflux transporter MFP subunit 1383991..1385115 Alkalilimnicola ehrlichii MLHE-1 4270321 YP_742026.1 CDS Mlg_1187 NC_008340.1 1385122 1388232 D PFAM: acriflavin resistance protein; KEGG: rru:Rru_A2094 acriflavin resistance protein; acriflavin resistance protein 1385122..1388232 Alkalilimnicola ehrlichii MLHE-1 4270322 YP_742027.1 CDS Mlg_1188 NC_008340.1 1388288 1390015 D PFAM: Endonuclease/exonuclease/phosphatase; KEGG: gvi:gll4077 hypothetical protein; endonuclease/exonuclease/phosphatase 1388288..1390015 Alkalilimnicola ehrlichii MLHE-1 4270323 YP_742028.1 CDS Mlg_1189 NC_008340.1 1390033 1391025 R KEGG: sat:SYN_02063 outer membrane protein; outer membrane protein complement(1390033..1391025) Alkalilimnicola ehrlichii MLHE-1 4270324 YP_742029.1 CDS ectC NC_008340.1 1391138 1391536 D N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid; L-ectoine synthase 1391138..1391536 Alkalilimnicola ehrlichii MLHE-1 4270325 YP_742030.1 CDS Mlg_1191 NC_008340.1 1391637 1392959 R catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase complement(1391637..1392959) Alkalilimnicola ehrlichii MLHE-1 4270326 YP_742031.1 CDS Mlg_1192 NC_008340.1 1393015 1393659 R TIGRFAM: L-2,4-diaminobutyric acid acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: noc:Noc_1562 proteinase inhibitor I3, Kunitz legume; L-2,4-diaminobutyric acid acetyltransferase complement(1393015..1393659) Alkalilimnicola ehrlichii MLHE-1 4270327 YP_742032.1 CDS Mlg_1193 NC_008340.1 1393870 1394559 D PFAM: peptidase M22, glycoprotease; KEGG: noc:Noc_0917 peptidase M22, glycoprotease; peptidase M22, glycoprotease 1393870..1394559 Alkalilimnicola ehrlichii MLHE-1 4270328 YP_742033.1 CDS Mlg_1194 NC_008340.1 1394611 1395600 R PFAM: periplasmic solute binding protein; KEGG: atc:AGR_C_2805 adhesin; periplasmic solute binding protein complement(1394611..1395600) Alkalilimnicola ehrlichii MLHE-1 4270329 YP_742034.1 CDS Mlg_1195 NC_008340.1 1395722 1396210 D PFAM: ferric-uptake regulator; KEGG: noc:Noc_2424 ferric-uptake regulator; ferric uptake regulator family protein 1395722..1396210 Alkalilimnicola ehrlichii MLHE-1 4270330 YP_742035.1 CDS Mlg_1196 NC_008340.1 1396198 1396977 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pae:PA5500 zinc transport system ATP-binding protein; ABC transporter-like protein 1396198..1396977 Alkalilimnicola ehrlichii MLHE-1 4270331 YP_742036.1 CDS Mlg_1197 NC_008340.1 1396970 1397791 D PFAM: ABC-3 protein; KEGG: pfl:PFL_0076 zinc ABC transporter, permease; ABC-3 protein 1396970..1397791 Alkalilimnicola ehrlichii MLHE-1 4270332 YP_742037.1 CDS Mlg_1198 NC_008340.1 1397819 1398634 R KEGG: pol:Bpro_1681 hypothetical protein; hypothetical protein complement(1397819..1398634) Alkalilimnicola ehrlichii MLHE-1 4270333 YP_742038.1 CDS Mlg_1199 NC_008340.1 1398723 1400129 R PFAM: protein of unknown function DUF214; KEGG: pol:Bpro_1679 protein of unknown function DUF214; hypothetical protein complement(1398723..1400129) Alkalilimnicola ehrlichii MLHE-1 4270687 YP_742039.1 CDS Mlg_1200 NC_008340.1 1400126 1400773 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_1678 ABC transporter related; ABC transporter-like protein complement(1400126..1400773) Alkalilimnicola ehrlichii MLHE-1 4270688 YP_742040.1 CDS hisI NC_008340.1 1400899 1401327 R PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase complement(1400899..1401327) Alkalilimnicola ehrlichii MLHE-1 4270689 YP_742041.1 CDS Mlg_1202 NC_008340.1 1401330 1401956 R KEGG: cbu:CBU_0730 hypothetical protein; ABC transporter auxiliary component-like protein complement(1401330..1401956) Alkalilimnicola ehrlichii MLHE-1 4270690 YP_742042.1 CDS Mlg_1203 NC_008340.1 1401958 1402890 R PFAM: Mammalian cell entry related domain protein; KEGG: cbu:CBU_0729 conserved hypothetical protein; hypothetical protein complement(1401958..1402890) Alkalilimnicola ehrlichii MLHE-1 4270691 YP_742043.1 CDS Mlg_1204 NC_008340.1 1402892 1403665 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xoo:XOO0805 ABC transporter ATP-binding protein; ABC transporter-like protein complement(1402892..1403665) Alkalilimnicola ehrlichii MLHE-1 4270692 YP_742044.1 CDS Mlg_1205 NC_008340.1 1403662 1404795 R PFAM: protein of unknown function DUF140; KEGG: dvu:DVU0612 STAS domain protein; hypothetical protein complement(1403662..1404795) Alkalilimnicola ehrlichii MLHE-1 4270693 YP_742045.1 CDS Mlg_1206 NC_008340.1 1404913 1406454 D KEGG: noc:Noc_0379 hypothetical protein; hypothetical protein 1404913..1406454 Alkalilimnicola ehrlichii MLHE-1 4270694 YP_742046.1 CDS Mlg_1207 NC_008340.1 1406491 1407858 D TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase, GCS2; KEGG: rru:Rru_A0570 glutamate--cysteine ligase; glutamate--cysteine ligase 1406491..1407858 Alkalilimnicola ehrlichii MLHE-1 4270695 YP_742047.1 CDS Mlg_1208 NC_008340.1 1407958 1408938 D PFAM: protein of unknown function DUF523; Protein of unknown function DUF1722; KEGG: noc:Noc_0394 protein of unknown function DUF523; hypothetical protein 1407958..1408938 Alkalilimnicola ehrlichii MLHE-1 4270696 YP_742048.1 CDS Mlg_1209 NC_008340.1 1408982 1410238 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: noc:Noc_2937 secretion protein HlyD; RND family efflux transporter MFP subunit 1408982..1410238 Alkalilimnicola ehrlichii MLHE-1 4270697 YP_742049.1 CDS Mlg_1210 NC_008340.1 1410235 1413459 D PFAM: acriflavin resistance protein; KEGG: noc:Noc_2936 acriflavin resistance protein; acriflavin resistance protein 1410235..1413459 Alkalilimnicola ehrlichii MLHE-1 4270698 YP_742050.1 CDS Mlg_1211 NC_008340.1 1413452 1414207 D PFAM: molybdopterin binding domain; KEGG: eba:ebA4355 predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; molybdopterin binding domain-containing protein 1413452..1414207 Alkalilimnicola ehrlichii MLHE-1 4270699 YP_742051.1 CDS Mlg_1212 NC_008340.1 1414204 1414440 D hypothetical protein 1414204..1414440 Alkalilimnicola ehrlichii MLHE-1 4270700 YP_742052.1 CDS Mlg_1213 NC_008340.1 1414484 1415680 R PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: cps:CPS_1909 major facilitator family transporter; major facilitator transporter complement(1414484..1415680) Alkalilimnicola ehrlichii MLHE-1 4270701 YP_742053.1 CDS queA NC_008340.1 1415972 1417009 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1415972..1417009 Alkalilimnicola ehrlichii MLHE-1 4269745 YP_742054.1 CDS Mlg_1215 NC_008340.1 1417002 1418159 D KEGG: pfo:Pfl_4621 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 1417002..1418159 Alkalilimnicola ehrlichii MLHE-1 4269746 YP_742055.1 CDS Mlg_1216 NC_008340.1 1418313 1418651 D TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: tcx:Tcr_1332 preprotein translocase, YajC subunit; protein translocase subunit yajC 1418313..1418651 Alkalilimnicola ehrlichii MLHE-1 4269747 YP_742056.1 CDS Mlg_1217 NC_008340.1 1418718 1419224 D TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: ftl:FTL_0847 preprotein translocase; protein translocase subunit yajC 1418718..1419224 Alkalilimnicola ehrlichii MLHE-1 4269748 YP_742057.1 CDS secD NC_008340.1 1419252 1421117 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1419252..1421117 Alkalilimnicola ehrlichii MLHE-1 4269749 YP_742058.1 CDS secF NC_008340.1 1421127 1422071 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1421127..1422071 Alkalilimnicola ehrlichii MLHE-1 4269750 YP_742059.1 CDS Mlg_1220 NC_008340.1 1422377 1422814 D PFAM: CBS domain containing protein; KEGG: xcb:XC_1246 hypothetical protein; signal-transduction protein 1422377..1422814 Alkalilimnicola ehrlichii MLHE-1 4269751 YP_742060.1 CDS Mlg_1221 NC_008340.1 1422923 1424869 D PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: mag:amb2153 Ser protein kinase; serine protein kinase PrkA 1422923..1424869 Alkalilimnicola ehrlichii MLHE-1 4269752 YP_742061.1 CDS Mlg_1222 NC_008340.1 1424889 1426181 D PFAM: protein of unknown function DUF444; KEGG: mag:amb2154 hypothetical protein; hypothetical protein 1424889..1426181 Alkalilimnicola ehrlichii MLHE-1 4269753 YP_742062.1 CDS Mlg_1223 NC_008340.1 1426186 1427754 D PFAM: SpoVR family protein; KEGG: mag:amb2155 hypothetical protein; SpoVR family protein 1426186..1427754 Alkalilimnicola ehrlichii MLHE-1 4269754 YP_742063.1 CDS Mlg_1224 NC_008340.1 1427825 1428571 R TIGRFAM: Glutaredoxin-family domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; glutaredoxin; Redoxin domain protein; KEGG: ava:Ava_4981 glutaredoxin-like region; glutaredoxin family protein complement(1427825..1428571) Alkalilimnicola ehrlichii MLHE-1 4269755 YP_742064.1 CDS Mlg_1225 NC_008340.1 1428645 1429187 D PFAM: GCN5-related N-acetyltransferase; KEGG: dar:Daro_0191 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 1428645..1429187 Alkalilimnicola ehrlichii MLHE-1 4269756 YP_742065.1 CDS Mlg_1226 NC_008340.1 1429237 1430337 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1429237..1430337 Alkalilimnicola ehrlichii MLHE-1 4269757 YP_742066.1 CDS Mlg_1227 NC_008340.1 1430337 1431479 D PFAM: nucleoside:H+ symporter; major facilitator superfamily MFS_1; KEGG: noc:Noc_2803 nucleoside/H+ symporter, major facilitator superfamily MFS_1; major facilitator transporter 1430337..1431479 Alkalilimnicola ehrlichii MLHE-1 4269758 YP_742067.1 CDS Mlg_1228 NC_008340.1 1431600 1433009 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 1431600..1433009 Alkalilimnicola ehrlichii MLHE-1 4269759 YP_742068.1 CDS leuD NC_008340.1 1433087 1433743 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 1433087..1433743 Alkalilimnicola ehrlichii MLHE-1 4269760 YP_742069.1 CDS Mlg_1230 NC_008340.1 1433777 1434862 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1433777..1434862 Alkalilimnicola ehrlichii MLHE-1 4269761 YP_742070.1 CDS Mlg_1231 NC_008340.1 1434916 1435938 D KEGG: tcx:Tcr_0800 aspartate-semialdehyde dehydrogenase, USG-1 related; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; aspartate semialdehyde dehydrogenase 1434916..1435938 Alkalilimnicola ehrlichii MLHE-1 4269762 YP_742071.1 CDS Mlg_1232 NC_008340.1 1436029 1438449 D KEGG: tbd:Tbd_1918 membrane protein; K07288 uncharacterized membrane protein; hypothetical protein 1436029..1438449 Alkalilimnicola ehrlichii MLHE-1 4269016 YP_742072.1 CDS Mlg_1233 NC_008340.1 1438480 1439151 D KEGG: tbd:Tbd_1917 hypothetical protein; hypothetical protein 1438480..1439151 Alkalilimnicola ehrlichii MLHE-1 4269017 YP_742073.1 CDS Mlg_1234 NC_008340.1 1439177 1439962 D KEGG: sgl:SG1619 pseudouridylate synthase I; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 1439177..1439962 Alkalilimnicola ehrlichii MLHE-1 4269018 YP_742074.1 CDS Mlg_1235 NC_008340.1 1439983 1440675 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 1439983..1440675 Alkalilimnicola ehrlichii MLHE-1 4269019 YP_742075.1 CDS Mlg_1236 NC_008340.1 1440656 1441891 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1440656..1441891 Alkalilimnicola ehrlichii MLHE-1 4269020 YP_742076.1 CDS trpA NC_008340.1 1441888 1442712 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1441888..1442712 Alkalilimnicola ehrlichii MLHE-1 4269021 YP_742077.1 CDS Mlg_1238 NC_008340.1 1442709 1443644 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: noc:Noc_1022 acetyl-CoA carboxylase carboxyl transferase, beta subunit; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 1442709..1443644 Alkalilimnicola ehrlichii MLHE-1 4269022 YP_742078.1 CDS Mlg_1239 NC_008340.1 1443650 1444963 D KEGG: xcb:XC_3285 folylpolyglutamate synthase/dihydrofolate synthase; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; FolC bifunctional protein 1443650..1444963 Alkalilimnicola ehrlichii MLHE-1 4269023 YP_742079.1 CDS Mlg_1240 NC_008340.1 1445002 1445688 D PFAM: Sporulation domain protein; KEGG: pst:PSPTO3813 DedD protein; sporulation domain-containing protein 1445002..1445688 Alkalilimnicola ehrlichii MLHE-1 4269024 YP_742080.1 CDS Mlg_1241 NC_008340.1 1445763 1446356 D PFAM: Colicin V production protein; KEGG: mca:MCA2490 CvpA family protein; colicin V production protein 1445763..1446356 Alkalilimnicola ehrlichii MLHE-1 4269025 YP_742081.1 CDS Mlg_1242 NC_008340.1 1446376 1447890 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1446376..1447890 Alkalilimnicola ehrlichii MLHE-1 4269026 YP_742082.1 CDS Mlg_1243 NC_008340.1 1447898 1449118 D catalyzes the conversion of O-succinylhomoserine into homocysteine; O-succinylhomoserine sulfhydrylase 1447898..1449118 Alkalilimnicola ehrlichii MLHE-1 4269027 YP_742083.1 CDS Mlg_1244 NC_008340.1 1449156 1449956 R PFAM: inositol monophosphatase; KEGG: mca:MCA2609 inositol monophosphatase; inositol-phosphate phosphatase complement(1449156..1449956) Alkalilimnicola ehrlichii MLHE-1 4269028 YP_742084.1 CDS Mlg_1245 NC_008340.1 1450138 1450920 D TIGRFAM: RNA methyltransferase, TrmH family, group 1; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sgl:SG1771 RNA methyltransferase; RNA methyltransferase 1450138..1450920 Alkalilimnicola ehrlichii MLHE-1 4269029 YP_742085.1 CDS Mlg_1246 NC_008340.1 1451070 1451912 D TIGRFAM: serine O-acetyltransferase; KEGG: pfo:Pfl_4614 serine O-acetyltransferase; serine O-acetyltransferase 1451070..1451912 Alkalilimnicola ehrlichii MLHE-1 4269030 YP_742086.1 CDS Mlg_1247 NC_008340.1 1452024 1452350 D TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: rso:RSc1021 hypothetical protein; iron-sulfur cluster assembly accessory protein 1452024..1452350 Alkalilimnicola ehrlichii MLHE-1 4269031 YP_742087.1 CDS ndk NC_008340.1 1452522 1452947 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1452522..1452947 Alkalilimnicola ehrlichii MLHE-1 4269032 YP_742088.1 CDS Mlg_1249 NC_008340.1 1452982 1454064 D TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: mca:MCA2887 conserved hypothetical protein TIGR00048; radical SAM protein 1452982..1454064 Alkalilimnicola ehrlichii MLHE-1 4269171 YP_742089.1 CDS Mlg_1250 NC_008340.1 1454061 1454819 D KEGG: noc:Noc_0901 tfp pilus assembly protein PilF; TIGRFAM: type IV pilus biogenesis/stability protein PilW; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; type IV pilus biogenesis/stability protein PilW 1454061..1454819 Alkalilimnicola ehrlichii MLHE-1 4269172 YP_742090.1 CDS Mlg_1251 NC_008340.1 1454823 1455800 D SMART: helix-turn-helix domain protein; KEGG: ilo:IL2035 predicted transcriptional regulator, contains N-terminal xre-type HTH domain; XRE family transcriptional regulator 1454823..1455800 Alkalilimnicola ehrlichii MLHE-1 4269173 YP_742091.1 CDS hisS NC_008340.1 1455877 1457166 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1455877..1457166 Alkalilimnicola ehrlichii MLHE-1 4269174 YP_742092.1 CDS Mlg_1253 NC_008340.1 1457169 1457798 D KEGG: noc:Noc_0820 hypothetical protein; hypothetical protein 1457169..1457798 Alkalilimnicola ehrlichii MLHE-1 4269175 YP_742093.1 CDS Mlg_1254 NC_008340.1 1457851 1459002 D PFAM: Pyrrolo-quinoline quinone; KEGG: noc:Noc_0821 pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 1457851..1459002 Alkalilimnicola ehrlichii MLHE-1 4269176 YP_742094.1 CDS Mlg_1255 NC_008340.1 1459005 1459781 D PFAM: protein of unknown function DUF833; KEGG: gsu:GSU0792 hypothetical protein; hypothetical protein 1459005..1459781 Alkalilimnicola ehrlichii MLHE-1 4269177 YP_742095.1 CDS adk NC_008340.1 1459971 1460630 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1459971..1460630 Alkalilimnicola ehrlichii MLHE-1 4269178 YP_742096.1 CDS Mlg_1257 NC_008340.1 1460769 1461071 D KEGG: hch:HCH_05060 hypothetical protein; hypothetical protein 1460769..1461071 Alkalilimnicola ehrlichii MLHE-1 4269179 YP_742097.1 CDS Mlg_1258 NC_008340.1 1461194 1461859 D PFAM: isochorismatase hydrolase; KEGG: noc:Noc_0271 pyrazinamidase / nicotinamidase; nicotinamidase 1461194..1461859 Alkalilimnicola ehrlichii MLHE-1 4269180 YP_742098.1 CDS Mlg_1259 NC_008340.1 1461880 1462413 D KEGG: noc:Noc_2712 hypothetical protein; hypothetical protein 1461880..1462413 Alkalilimnicola ehrlichii MLHE-1 4269181 YP_742099.1 CDS Mlg_1260 NC_008340.1 1462451 1464127 R KEGG: xfa:XF1501 sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; sulfate adenylyltransferase subunit 1 complement(1462451..1464127) Alkalilimnicola ehrlichii MLHE-1 4269182 YP_742100.1 CDS Mlg_1261 NC_008340.1 1464166 1465113 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(1464166..1465113) Alkalilimnicola ehrlichii MLHE-1 4269183 YP_742101.1 CDS Mlg_1262 NC_008340.1 1465110 1465964 R TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pae:PA2611 uroporphyrin-III C-methyltransferase / precorrin-2 oxidase / ferrochelatase; uroporphyrinogen-III C-methyltransferase complement(1465110..1465964) Alkalilimnicola ehrlichii MLHE-1 4269184 YP_742102.1 CDS Mlg_1263 NC_008340.1 1465967 1466704 R KEGG: neu:NE0855 probable 5' adenylylsulfate APS reductase; TIGRFAM: adenylylsulfate reductase, thioredoxin dependent; PFAM: phosphoadenosine phosphosulfate reductase; phosphoadenylylsulfate reductase complement(1465967..1466704) Alkalilimnicola ehrlichii MLHE-1 4269185 YP_742103.1 CDS Mlg_1264 NC_008340.1 1466914 1468569 D PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: mca:MCA2059 nitrite/sulfite reductase; nitrite/sulfite reductase hemoprotein subunit beta 1466914..1468569 Alkalilimnicola ehrlichii MLHE-1 4269186 YP_742104.1 CDS Mlg_1265 NC_008340.1 1468556 1469005 D PFAM: Uncharacterised conserved protein UCP030820; KEGG: eba:ebA2621 hypothetical protein; hypothetical protein 1468556..1469005 Alkalilimnicola ehrlichii MLHE-1 4269187 YP_742105.1 CDS Mlg_1266 NC_008340.1 1469238 1469612 D PFAM: cytochrome c, class I; KEGG: reu:Reut_A3262 cytochrome c, class I; cytochrome c, class I 1469238..1469612 Alkalilimnicola ehrlichii MLHE-1 4269188 YP_742106.1 CDS Mlg_1267 NC_008340.1 1469661 1470974 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mag:amb2173 uncharacterized NAD(FAD)-dependent dehydrogenase; sulfide dehydrogenase (flavocytochrome), flavoprotein subunit 1469661..1470974 Alkalilimnicola ehrlichii MLHE-1 4268930 YP_742107.1 CDS Mlg_1268 NC_008340.1 1471008 1472114 D PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: bja:blr2899 hypothetical protein; hypothetical protein 1471008..1472114 Alkalilimnicola ehrlichii MLHE-1 4268931 YP_742108.1 CDS Mlg_1269 NC_008340.1 1472201 1473043 D TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpa:RPA1367 sulfur oxidation protein SoxY; hypothetical protein 1472201..1473043 Alkalilimnicola ehrlichii MLHE-1 4268932 YP_742109.1 CDS Mlg_1270 NC_008340.1 1473165 1474016 R KEGG: mag:amb4323 predicted integral membrane protein; hypothetical protein complement(1473165..1474016) Alkalilimnicola ehrlichii MLHE-1 4268933 YP_742110.1 CDS Mlg_1271 NC_008340.1 1474152 1474817 R KEGG: mfa:Mfla_0519 integral membrane protein; integral membrane protein complement(1474152..1474817) Alkalilimnicola ehrlichii MLHE-1 4268934 YP_742111.1 CDS Mlg_1272 NC_008340.1 1474855 1475628 R hypothetical protein complement(1474855..1475628) Alkalilimnicola ehrlichii MLHE-1 4268935 YP_742112.1 CDS Mlg_1273 NC_008340.1 1475768 1477066 D PFAM: nucleoside recognition domain protein; KEGG: mag:amb1309 uncharacterized membrane protein; nucleoside recognition domain-containing protein 1475768..1477066 Alkalilimnicola ehrlichii MLHE-1 4268936 YP_742113.1 CDS Mlg_1274 NC_008340.1 1477051 1478430 R KEGG: csa:Csal_3028 hypothetical protein; hypothetical protein complement(1477051..1478430) Alkalilimnicola ehrlichii MLHE-1 4268937 YP_742114.1 CDS Mlg_1275 NC_008340.1 1478581 1479552 D PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: ppr:PBPRB1236 hypothetical protein; C4-dicarboxylate transporter/malic acid transport protein 1478581..1479552 Alkalilimnicola ehrlichii MLHE-1 4268938 YP_742115.1 CDS Mlg_1276 NC_008340.1 1479586 1480551 R PFAM: Glutathione S-transferase, C-terminal domain; KEGG: mlo:mll2799 glutathione S-transferase; glutathione S-transferase-like protein complement(1479586..1480551) Alkalilimnicola ehrlichii MLHE-1 4268939 YP_742116.1 CDS Mlg_1277 NC_008340.1 1480578 1481177 R TIGRFAM: flavoprotein WrbA; PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: tcx:Tcr_1010 flavoprotein WrbA; flavoprotein WrbA complement(1480578..1481177) Alkalilimnicola ehrlichii MLHE-1 4268940 YP_742117.1 CDS Mlg_1278 NC_008340.1 1481250 1482512 R TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: eba:ebA1078 probable molybdopterin biosynthesis MOEA protein; molybdopterin molybdochelatase complement(1481250..1482512) Alkalilimnicola ehrlichii MLHE-1 4268941 YP_742118.1 CDS Mlg_1279 NC_008340.1 1482560 1482772 D KEGG: sme:SMa1515 hypothetical protein; hypothetical protein 1482560..1482772 Alkalilimnicola ehrlichii MLHE-1 4268942 YP_742119.1 CDS moaA NC_008340.1 1482813 1483811 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(1482813..1483811) Alkalilimnicola ehrlichii MLHE-1 4268943 YP_742120.1 CDS Mlg_1281 NC_008340.1 1484060 1484602 D KEGG: eba:ebA2942 hypothetical protein; hypothetical protein 1484060..1484602 Alkalilimnicola ehrlichii MLHE-1 4268944 YP_742121.1 CDS Mlg_1282 NC_008340.1 1484638 1485303 D KEGG: rso:RSc2377 proline rich protein; hypothetical protein 1484638..1485303 Alkalilimnicola ehrlichii MLHE-1 4268945 YP_742122.1 CDS Mlg_1283 NC_008340.1 1485425 1487125 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: son:SO4506 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 1485425..1487125 Alkalilimnicola ehrlichii MLHE-1 4268946 YP_742123.1 CDS Mlg_1284 NC_008340.1 1487122 1487745 D PFAM: cytoplasmic chaperone TorD family protein; KEGG: nha:Nham_3124 cytoplasmic chaperone TorD; cytoplasmic chaperone TorD family protein 1487122..1487745 Alkalilimnicola ehrlichii MLHE-1 4269050 YP_742124.1 CDS Mlg_1285 NC_008340.1 1487810 1488028 D TIGRFAM: Twin-arginine translocation pathway signal; hypothetical protein 1487810..1488028 Alkalilimnicola ehrlichii MLHE-1 4269051 YP_742125.1 CDS Mlg_1286 NC_008340.1 1488097 1490985 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: vpa:VP1513 formate dehydrogenase large subunit; formate dehydrogenase alpha subunit 1488097..1490985 Alkalilimnicola ehrlichii MLHE-1 4269052 YP_742126.1 CDS Mlg_1287 NC_008340.1 1491016 1491606 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_3260 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 1491016..1491606 Alkalilimnicola ehrlichii MLHE-1 4269053 YP_742127.1 CDS Mlg_1288 NC_008340.1 1491612 1491839 D hypothetical protein 1491612..1491839 Alkalilimnicola ehrlichii MLHE-1 4269054 YP_742128.1 CDS Mlg_1289 NC_008340.1 1491857 1492969 D TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: csa:Csal_1917 formate dehydrogenase, gamma subunit; formate dehydrogenase gamma subunit 1491857..1492969 Alkalilimnicola ehrlichii MLHE-1 4269055 YP_742129.1 CDS Mlg_1290 NC_008340.1 1493091 1493591 D KEGG: nha:Nham_3120 hypothetical protein; hypothetical protein 1493091..1493591 Alkalilimnicola ehrlichii MLHE-1 4269056 YP_742130.1 CDS Mlg_1291 NC_008340.1 1493904 1494185 D hypothetical protein 1493904..1494185 Alkalilimnicola ehrlichii MLHE-1 4269057 YP_742131.1 CDS Mlg_1292 NC_008340.1 1494182 1494634 D KEGG: bha:BH1312 hypothetical protein; hypothetical protein 1494182..1494634 Alkalilimnicola ehrlichii MLHE-1 4269058 YP_742132.1 CDS Mlg_1293 NC_008340.1 1494709 1495131 D PFAM: protein of unknown function UPF0047; KEGG: noc:Noc_1691 hypothetical protein; hypothetical protein 1494709..1495131 Alkalilimnicola ehrlichii MLHE-1 4269059 YP_742133.1 CDS Mlg_1294 NC_008340.1 1495363 1495668 R hypothetical protein complement(1495363..1495668) Alkalilimnicola ehrlichii MLHE-1 4269061 YP_742134.1 CDS Mlg_1295 NC_008340.1 1495661 1495933 R PFAM: thiamineS protein; KEGG: rfr:Rfer_2848 thiamineS; sulfur transfer protein ThiS complement(1495661..1495933) Alkalilimnicola ehrlichii MLHE-1 4269062 YP_742135.1 CDS Mlg_1296 NC_008340.1 1495930 1497207 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: eba:ebA5007 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1495930..1497207) Alkalilimnicola ehrlichii MLHE-1 4269063 YP_742136.1 CDS Mlg_1297 NC_008340.1 1497224 1499074 R PFAM: aldehyde ferredoxin oxidoreductase; KEGG: mag:amb2922 Tungsten-containing aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase complement(1497224..1499074) Alkalilimnicola ehrlichii MLHE-1 4269064 YP_742137.1 CDS Mlg_1298 NC_008340.1 1499076 1499612 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: eba:ebA5004 iron-sulfur cluster-binding protein; potential subunit of aldehyde oxidoreductase; 4Fe-4S ferredoxin complement(1499076..1499612) Alkalilimnicola ehrlichii MLHE-1 4269065 YP_742138.1 CDS Mlg_1299 NC_008340.1 1499890 1500447 D PFAM: GTP cyclohydrolase I; KEGG: psp:PSPPH_1071 GTP cyclohydrolase I; GTP cyclohydrolase 1499890..1500447 Alkalilimnicola ehrlichii MLHE-1 4269066 YP_742139.1 CDS folX NC_008340.1 1500471 1500860 D catalyzes the formation of dihydromonapterin triphosphate from dihydroneopterin triphosphate; D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase 1500471..1500860 Alkalilimnicola ehrlichii MLHE-1 4268637 YP_742140.1 CDS Mlg_1301 NC_008340.1 1500873 1502558 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, transmembrane region; KEGG: hch:HCH_00660 response regulator containing a CheY-like receiver domain and a GGDEF domain; diguanylate cyclase complement(1500873..1502558) Alkalilimnicola ehrlichii MLHE-1 4268638 YP_742141.1 CDS gltX NC_008340.1 1502700 1504115 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1502700..1504115 Alkalilimnicola ehrlichii MLHE-1 4268639 YP_742142.1 CDS Mlg_1303 NC_008340.1 1504534 1504875 R TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: mag:amb3359 uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit; alkylhydroperoxidase complement(1504534..1504875) Alkalilimnicola ehrlichii MLHE-1 4268642 YP_742143.1 CDS Mlg_1304 NC_008340.1 1504881 1505513 R TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: bxe:Bxe_A1060 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdenum cofactor guanylyltransferase complement(1504881..1505513) Alkalilimnicola ehrlichii MLHE-1 4268643 YP_742144.1 CDS Mlg_1305 NC_008340.1 1505557 1506321 R KEGG: nph:NP4954A anaerobic dehydrogenase cluster protein; anaerobic dehydrogenase cluster protein complement(1505557..1506321) Alkalilimnicola ehrlichii MLHE-1 4268644 YP_742145.1 CDS Mlg_1306 NC_008340.1 1506655 1506984 D PFAM: regulatory protein, ArsR; KEGG: sil:SPOA0427 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 1506655..1506984 Alkalilimnicola ehrlichii MLHE-1 4268645 YP_742146.1 CDS Mlg_1307 NC_008340.1 1507162 1508922 D TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; sulphate transporter; KEGG: sil:SPO1956 sulfate permease; sulfate transporter 1507162..1508922 Alkalilimnicola ehrlichii MLHE-1 4268646 YP_742147.1 CDS Mlg_1308 NC_008340.1 1508933 1509487 R KEGG: sru:SRU_1074 methionine-S-sulfoxide reductase; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase complement(1508933..1509487) Alkalilimnicola ehrlichii MLHE-1 4268647 YP_742148.1 CDS Mlg_1309 NC_008340.1 1509484 1510467 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: noc:Noc_0537 sigma-54 specific transcriptional regulator, fis-type; Fis family transcriptional regulator complement(1509484..1510467) Alkalilimnicola ehrlichii MLHE-1 4268648 YP_742149.1 CDS Mlg_1310 NC_008340.1 1510488 1511195 R KEGG: noc:Noc_0538 hypothetical protein; hypothetical protein complement(1510488..1511195) Alkalilimnicola ehrlichii MLHE-1 4268649 YP_742150.1 CDS Mlg_1311 NC_008340.1 1511312 1512043 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gsu:GSU2188 ABC transporter, ATP-binding protein; ABC transporter-like protein 1511312..1512043 Alkalilimnicola ehrlichii MLHE-1 4268650 YP_742151.1 CDS Mlg_1312 NC_008340.1 1512043 1514574 D PFAM: protein of unknown function DUF214; KEGG: gsu:GSU2187 ABC transporter, permease; hypothetical protein 1512043..1514574 Alkalilimnicola ehrlichii MLHE-1 4268651 YP_742152.1 CDS Mlg_1313 NC_008340.1 1514571 1515716 D KEGG: sru:SRU_1328 hypothetical protein; hypothetical protein 1514571..1515716 Alkalilimnicola ehrlichii MLHE-1 4268652 YP_742153.1 CDS Mlg_1314 NC_008340.1 1515713 1516684 D PFAM: UspA domain protein; KEGG: nmu:Nmul_A0991 UspA; UspA domain-containing protein 1515713..1516684 Alkalilimnicola ehrlichii MLHE-1 4268653 YP_742154.1 CDS Mlg_1315 NC_008340.1 1516722 1518209 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: gsu:GSU2762 glycerol kinase; glycerol kinase complement(1516722..1518209) Alkalilimnicola ehrlichii MLHE-1 4268654 YP_742155.1 CDS Mlg_1316 NC_008340.1 1518337 1520229 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(1518337..1520229) Alkalilimnicola ehrlichii MLHE-1 4268655 YP_742156.1 CDS Mlg_1317 NC_008340.1 1520604 1522205 D PFAM: Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; KEGG: gvi:gll2743 hypothetical protein; TPR repeat-containing protein 1520604..1522205 Alkalilimnicola ehrlichii MLHE-1 4268656 YP_742157.1 CDS Mlg_1318 NC_008340.1 1522253 1523080 R PFAM: regulatory proteins, IclR; KEGG: csa:Csal_0066 transcriptional regulator, IclR family; IclR family transcriptional regulator complement(1522253..1523080) Alkalilimnicola ehrlichii MLHE-1 4268657 YP_742158.1 CDS Mlg_1319 NC_008340.1 1523155 1524423 D PFAM: MOFRL domain protein; KEGG: eba:ebA4615 hydroxypyruvate reductase; hydroxypyruvate reductase 1523155..1524423 Alkalilimnicola ehrlichii MLHE-1 4268658 YP_742159.1 CDS Mlg_1320 NC_008340.1 1524464 1524805 D PFAM: transcriptional coactivator/pterin dehydratase; KEGG: mca:MCA0497 pterin-4-alpha-carbinolamine dehydratase; pterin-4-alpha-carbinolamine dehydratase 1524464..1524805 Alkalilimnicola ehrlichii MLHE-1 4268659 YP_742160.1 CDS Mlg_1321 NC_008340.1 1524851 1525348 R TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: mfa:Mfla_0199 molybdenum cofactor biosynthesis protein C; GTP cyclohydrolase subunit MoaC complement(1524851..1525348) Alkalilimnicola ehrlichii MLHE-1 4268660 YP_742161.1 CDS Mlg_1322 NC_008340.1 1525540 1526259 R PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: gvi:glr0293 probable carbonyl reductase; short-chain dehydrogenase/reductase SDR complement(1525540..1526259) Alkalilimnicola ehrlichii MLHE-1 4268661 YP_742162.1 CDS gpmA NC_008340.1 1526351 1527049 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(1526351..1527049) Alkalilimnicola ehrlichii MLHE-1 4268662 YP_742163.1 CDS Mlg_1324 NC_008340.1 1527188 1527640 R TIGRFAM: thioesterase domain, KEGG: cte:CT0459 hypothetical protein; thioesterase complement(1527188..1527640) Alkalilimnicola ehrlichii MLHE-1 4268663 YP_742164.1 CDS Mlg_1325 NC_008340.1 1527742 1528212 D PFAM: adenylate cyclase; KEGG: mca:MCA2454 hypothetical protein; adenylate cyclase 1527742..1528212 Alkalilimnicola ehrlichii MLHE-1 4268664 YP_742165.1 CDS Mlg_1326 NC_008340.1 1528216 1528749 D PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: csa:Csal_2068 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 1528216..1528749 Alkalilimnicola ehrlichii MLHE-1 4268665 YP_742166.1 CDS Mlg_1327 NC_008340.1 1528749 1529795 D PFAM: glycoside hydrolase, family 3 domain protein; KEGG: noc:Noc_2183 glycoside hydrolase, family 3-like; beta-N-acetylhexosaminidase 1528749..1529795 Alkalilimnicola ehrlichii MLHE-1 4268666 YP_742167.1 CDS Mlg_1328 NC_008340.1 1529825 1530421 D PFAM: phosphoribosyltransferase; KEGG: eba:ebA3304 hypoxanthine phosphoribosyltransferase; phosphoribosyltransferase 1529825..1530421 Alkalilimnicola ehrlichii MLHE-1 4268667 YP_742168.1 CDS Mlg_1329 NC_008340.1 1530418 1531155 D PFAM: purine phosphorylase, family 2; KEGG: noc:Noc_0457 5'-methylthioadenosine phosphorylase; methylthioadenosine phosphorylase 1530418..1531155 Alkalilimnicola ehrlichii MLHE-1 4268668 YP_742169.1 CDS Mlg_1330 NC_008340.1 1531160 1532146 R PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: nmu:Nmul_A1737 glycine cleavage T protein (aminomethyl transferase); glycine cleavage T protein (aminomethyl transferase) complement(1531160..1532146) Alkalilimnicola ehrlichii MLHE-1 4268669 YP_742170.1 CDS Mlg_1331 NC_008340.1 1532224 1532403 D PFAM: protein of unknown function DUF1674; KEGG: rru:Rru_A3578 hypothetical protein; hypothetical protein 1532224..1532403 Alkalilimnicola ehrlichii MLHE-1 4270004 YP_742171.1 CDS Mlg_1332 NC_008340.1 1532590 1532982 D PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: mag:amb3950 succinate dehydrogenase/fumarate reductase, cytochrome b subunit; succinate dehydrogenase subunit C 1532590..1532982 Alkalilimnicola ehrlichii MLHE-1 4270005 YP_742172.1 CDS Mlg_1333 NC_008340.1 1532982 1533362 D PFAM: succinate dehydrogenase, cytochrome b subunit; KEGG: mca:MCA1549 succinate dehydrogenase, hydrophobic membrane anchor protein; succinate dehydrogenase subunit D 1532982..1533362 Alkalilimnicola ehrlichii MLHE-1 4270006 YP_742173.1 CDS sdhA NC_008340.1 1533367 1535157 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1533367..1535157 Alkalilimnicola ehrlichii MLHE-1 4270007 YP_742174.1 CDS sdhB NC_008340.1 1535176 1535952 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 1535176..1535952 Alkalilimnicola ehrlichii MLHE-1 4270008 YP_742175.1 CDS Mlg_1336 NC_008340.1 1535970 1536200 D PFAM: protein of unknown function DUF339; KEGG: xac:XAC2079 hypothetical protein; hypothetical protein 1535970..1536200 Alkalilimnicola ehrlichii MLHE-1 4270009 YP_742176.1 CDS Mlg_1337 NC_008340.1 1536256 1536675 D hypothetical protein 1536256..1536675 Alkalilimnicola ehrlichii MLHE-1 4270010 YP_742177.1 CDS Mlg_1338 NC_008340.1 1536656 1538290 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(1536656..1538290) Alkalilimnicola ehrlichii MLHE-1 4270011 YP_742178.1 CDS Mlg_1339 NC_008340.1 1538574 1539149 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1538574..1539149 Alkalilimnicola ehrlichii MLHE-1 4270012 YP_742179.1 CDS Mlg_1340 NC_008340.1 1539168 1539899 D PFAM: Anti sigma-E protein RseA family protein; KEGG: xcv:XCV1371 negative regulator of sigma E activity; anti sigma-E protein, RseA 1539168..1539899 Alkalilimnicola ehrlichii MLHE-1 4270013 YP_742180.1 CDS Mlg_1341 NC_008340.1 1539880 1540899 D PFAM: MucB/RseB family protein; KEGG: noc:Noc_2464 MucB/RseB; sigma E regulatory protein, MucB/RseB 1539880..1540899 Alkalilimnicola ehrlichii MLHE-1 4270014 YP_742181.1 CDS Mlg_1342 NC_008340.1 1540896 1541339 D PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: mca:MCA1468 sigma factor regulator MucC; positive regulator of sigma E, RseC/MucC 1540896..1541339 Alkalilimnicola ehrlichii MLHE-1 4270015 YP_742182.1 CDS Mlg_1343 NC_008340.1 1541412 1542857 D TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: mca:MCA1467 serine protease, MucD; protease Do 1541412..1542857 Alkalilimnicola ehrlichii MLHE-1 4270016 YP_742183.1 CDS Mlg_1344 NC_008340.1 1542897 1544780 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1542897..1544780 Alkalilimnicola ehrlichii MLHE-1 4270017 YP_742184.1 CDS Mlg_1345 NC_008340.1 1544792 1545565 D KEGG: mca:MCA1465 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I 1544792..1545565 Alkalilimnicola ehrlichii MLHE-1 4270018 YP_742185.1 CDS Mlg_1346 NC_008340.1 1545606 1545986 D KEGG: xoo:XOO1854 hypothetical protein; hypothetical protein 1545606..1545986 Alkalilimnicola ehrlichii MLHE-1 4270019 YP_742186.1 CDS rnc NC_008340.1 1545986 1546672 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1545986..1546672 Alkalilimnicola ehrlichii MLHE-1 4270020 YP_742187.1 CDS Mlg_1348 NC_008340.1 1546662 1547609 D TIGRFAM: small GTP-binding protein; GTP-binding; GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; KH, type 2 domain protein; KEGG: pae:PA0771 GTP-binding protein Era; GTP-binding protein Era 1546662..1547609 Alkalilimnicola ehrlichii MLHE-1 4268602 YP_742188.1 CDS Mlg_1349 NC_008340.1 1547614 1548357 D TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: noc:Noc_0794 recombination protein O, RecO; DNA repair protein RecO 1547614..1548357 Alkalilimnicola ehrlichii MLHE-1 4268603 YP_742189.1 CDS Mlg_1350 NC_008340.1 1548347 1549132 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1548347..1549132 Alkalilimnicola ehrlichii MLHE-1 4268604 YP_742190.1 CDS Mlg_1351 NC_008340.1 1549129 1549515 D KEGG: vch:VC2457 holo-(acyl-carrier-protein) synthase; TIGRFAM: holo-acyl-carrier-protein synthase; Phosphopantethiene-protein transferase; PFAM: 4'-phosphopantetheinyl transferase; holo-ACP synthase 1549129..1549515 Alkalilimnicola ehrlichii MLHE-1 4268605 YP_742191.1 CDS cysM NC_008340.1 1549552 1550445 D catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 1549552..1550445 Alkalilimnicola ehrlichii MLHE-1 4268606 YP_742192.1 CDS Mlg_1353 NC_008340.1 1550448 1551239 D KEGG: noc:Noc_0800 hypothetical protein; hypothetical protein 1550448..1551239 Alkalilimnicola ehrlichii MLHE-1 4268607 YP_742193.1 CDS rumA NC_008340.1 1551229 1552566 D in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1551229..1552566 Alkalilimnicola ehrlichii MLHE-1 4268608 YP_742194.1 CDS Mlg_1355 NC_008340.1 1552568 1553173 D TIGRFAM: Nucleoside diphosphate pyrophosphatase; PFAM: NUDIX hydrolase; KEGG: neu:NE2470 ADP-ribose pyrophosphatase; nucleoside diphosphate pyrophosphatase 1552568..1553173 Alkalilimnicola ehrlichii MLHE-1 4268609 YP_742195.1 CDS Mlg_1356 NC_008340.1 1553191 1553982 R KEGG: dar:Daro_2854 hypothetical protein; hypothetical protein complement(1553191..1553982) Alkalilimnicola ehrlichii MLHE-1 4268610 YP_742196.1 CDS Mlg_1357 NC_008340.1 1553979 1554476 R KEGG: pae:PA2632 hypothetical protein; hypothetical protein complement(1553979..1554476) Alkalilimnicola ehrlichii MLHE-1 4268611 YP_742197.1 CDS Mlg_1358 NC_008340.1 1554508 1555875 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1554508..1555875) Alkalilimnicola ehrlichii MLHE-1 4268612 YP_742198.1 CDS Mlg_1359 NC_008340.1 1556042 1557430 D PFAM: fumarate lyase; KEGG: mca:MCA1543 fumarate hydratase; fumarase 1556042..1557430 Alkalilimnicola ehrlichii MLHE-1 4268613 YP_742199.1 CDS Mlg_1360 NC_008340.1 1557405 1558262 R KEGG: noc:Noc_2131 pyrimidine reductase, riboflavin biosynthesis, RibD; pyrimidine reductase, riboflavin biosynthesis, RibD complement(1557405..1558262) Alkalilimnicola ehrlichii MLHE-1 4268614 YP_742200.1 CDS Mlg_1361 NC_008340.1 1558379 1559023 D PFAM: Uracil-DNA glycosylase superfamily; KEGG: tbd:Tbd_0703 hypothetical protein; uracil-DNA glycosylase 1558379..1559023 Alkalilimnicola ehrlichii MLHE-1 4268615 YP_742201.1 CDS uvrC NC_008340.1 1559020 1560855 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 1559020..1560855 Alkalilimnicola ehrlichii MLHE-1 4268616 YP_742202.1 CDS Mlg_1363 NC_008340.1 1560859 1561410 D KEGG: noc:Noc_1643 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1560859..1561410 Alkalilimnicola ehrlichii MLHE-1 4268617 YP_742203.1 CDS Mlg_1364 NC_008340.1 1561990 1562670 R KEGG: noc:Noc_1912 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase complement(1561990..1562670) Alkalilimnicola ehrlichii MLHE-1 4268127 YP_742204.1 CDS Mlg_1365 NC_008340.1 1562657 1563265 R KEGG: rba:RB13120 hypothetical protein- transmembrane protein; transmembrane protein complement(1562657..1563265) Alkalilimnicola ehrlichii MLHE-1 4268128 YP_742205.1 CDS Mlg_1366 NC_008340.1 1563460 1564089 D PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: dge:Dgeo_2143 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein 1563460..1564089 Alkalilimnicola ehrlichii MLHE-1 4268129 YP_742206.1 CDS Mlg_1367 NC_008340.1 1564049 1564951 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: mca:MCA2186 oxidoreductase, short-chain dehydrogenase/reductase; short-chain dehydrogenase/reductase SDR complement(1564049..1564951) Alkalilimnicola ehrlichii MLHE-1 4268130 YP_742207.1 CDS Mlg_1368 NC_008340.1 1564990 1566177 R PFAM: CBS domain containing protein; peptidase M50; KEGG: det:DET0769 protease; peptidase M50 complement(1564990..1566177) Alkalilimnicola ehrlichii MLHE-1 4268131 YP_742208.1 CDS Mlg_1369 NC_008340.1 1566235 1567143 D KEGG: tdn:Tmden_0645 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 1566235..1567143 Alkalilimnicola ehrlichii MLHE-1 4268132 YP_742209.1 CDS Mlg_1370 NC_008340.1 1567153 1568949 D KEGG: pae:PA1113 probable ATP-binding/permease fusion ABC transporter; TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid ABC transporter ATPase/inner membrane protein 1567153..1568949 Alkalilimnicola ehrlichii MLHE-1 4268133 YP_742210.1 CDS Mlg_1371 NC_008340.1 1568957 1571026 R TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: pae:PA5291 probable choline transporter; choline/carnitine/betaine transporter complement(1568957..1571026) Alkalilimnicola ehrlichii MLHE-1 4268134 YP_742211.1 CDS Mlg_1372 NC_008340.1 1571137 1572573 R KEGG: mca:MCA0115 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase complement(1571137..1572573) Alkalilimnicola ehrlichii MLHE-1 4268135 YP_742212.1 CDS Mlg_1373 NC_008340.1 1572745 1573962 R PFAM: beta-ketoacyl synthase; KEGG: pae:PA1609 beta-ketoacyl-ACP synthase I; 3-oxoacyl-ACP synthase complement(1572745..1573962) Alkalilimnicola ehrlichii MLHE-1 4268136 YP_742213.1 CDS Mlg_1374 NC_008340.1 1574017 1574547 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(1574017..1574547) Alkalilimnicola ehrlichii MLHE-1 4268137 YP_742214.1 CDS Mlg_1375 NC_008340.1 1574684 1575190 R KEGG: csa:Csal_1035 hypothetical protein; hypothetical protein complement(1574684..1575190) Alkalilimnicola ehrlichii MLHE-1 4268138 YP_742215.1 CDS Mlg_1376 NC_008340.1 1575404 1576903 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: ilo:IL2583 signal transduction histidine kinase, contains HAMP domain; periplasmic sensor signal transduction histidine kinase 1575404..1576903 Alkalilimnicola ehrlichii MLHE-1 4268139 YP_742216.1 CDS Mlg_1377 NC_008340.1 1576900 1578321 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: ilo:IL2582 response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; Fis family transcriptional regulator 1576900..1578321 Alkalilimnicola ehrlichii MLHE-1 4269569 YP_742217.1 CDS Mlg_1378 NC_008340.1 1578389 1580374 D PFAM: Lytic transglycosylase, catalytic; KEGG: ilo:IL0012 soluble lytic murein transglycosylase; lytic transglycosylase catalytic subunit 1578389..1580374 Alkalilimnicola ehrlichii MLHE-1 4269570 YP_742218.1 CDS Mlg_1379 NC_008340.1 1580416 1580982 R hypothetical protein complement(1580416..1580982) Alkalilimnicola ehrlichii MLHE-1 4269571 YP_742219.1 CDS Mlg_1380 NC_008340.1 1581002 1581616 R PFAM: protein of unknown function UPF0126; KEGG: son:SO1319 hypothetical protein; hypothetical protein complement(1581002..1581616) Alkalilimnicola ehrlichii MLHE-1 4269572 YP_742220.1 CDS Mlg_1381 NC_008340.1 1581642 1583528 R TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, central region; Transketolase domain protein; KEGG: noc:Noc_1743 1-deoxy-D-xylulose-5-phosphate synthase; 1-deoxy-D-xylulose-5-phosphate synthase complement(1581642..1583528) Alkalilimnicola ehrlichii MLHE-1 4269573 YP_742221.1 CDS Mlg_1382 NC_008340.1 1583525 1583992 R PFAM: protein of unknown function UPF0153; KEGG: sil:SPO3155 hypothetical protein; hypothetical protein complement(1583525..1583992) Alkalilimnicola ehrlichii MLHE-1 4269574 YP_742222.1 CDS Mlg_1383 NC_008340.1 1584174 1586411 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: bca:BCE3758 heavy metal-transporting ATPase; heavy metal translocating P-type ATPase complement(1584174..1586411) Alkalilimnicola ehrlichii MLHE-1 4269575 YP_742223.1 CDS Mlg_1384 NC_008340.1 1586488 1586808 R KEGG: deh:cbdb_A907 hypothetical protein; hypothetical protein complement(1586488..1586808) Alkalilimnicola ehrlichii MLHE-1 4269576 YP_742224.1 CDS Mlg_1385 NC_008340.1 1586835 1587323 R KEGG: par:Psyc_1585 hypothetical protein; hypothetical protein complement(1586835..1587323) Alkalilimnicola ehrlichii MLHE-1 4269577 YP_742225.1 CDS Mlg_1386 NC_008340.1 1587304 1587906 R KEGG: hch:HCH_03866 hypothetical protein; hypothetical protein complement(1587304..1587906) Alkalilimnicola ehrlichii MLHE-1 4269578 YP_742226.1 CDS Mlg_1387 NC_008340.1 1588641 1588994 D hypothetical protein 1588641..1588994 Alkalilimnicola ehrlichii MLHE-1 4269579 YP_742227.1 CDS Mlg_1388 NC_008340.1 1589156 1590409 D PFAM: outer membrane efflux protein; KEGG: hch:HCH_03018 outer membrane protein; outer membrane efflux protein 1589156..1590409 Alkalilimnicola ehrlichii MLHE-1 4269580 YP_742228.1 CDS Mlg_1389 NC_008340.1 1590406 1591914 D TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: sde:Sde_1930 membrane-fusion protein-like; RND family efflux transporter MFP subunit 1590406..1591914 Alkalilimnicola ehrlichii MLHE-1 4269581 YP_742229.1 CDS Mlg_1390 NC_008340.1 1591926 1595045 D TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: hch:HCH_03020 silver efflux pump; CzcA family heavy metal efflux protein 1591926..1595045 Alkalilimnicola ehrlichii MLHE-1 4269582 YP_742230.1 CDS Mlg_1391 NC_008340.1 1595091 1595423 D KEGG: ppr:PBPRA1004 cation efflux system transmembrane protein; cation efflux system transmembrane protein 1595091..1595423 Alkalilimnicola ehrlichii MLHE-1 4269583 YP_742231.1 CDS Mlg_1392 NC_008340.1 1595499 1596107 R KEGG: pmt:PMT1841 hypothetical protein; hypothetical protein complement(1595499..1596107) Alkalilimnicola ehrlichii MLHE-1 4269584 YP_742232.1 CDS prfC NC_008340.1 1596229 1597803 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1596229..1597803 Alkalilimnicola ehrlichii MLHE-1 4269585 YP_742233.1 CDS Mlg_1394 NC_008340.1 1597818 1599011 R TIGRFAM: TraB family protein; PFAM: TraB determinant protein; KEGG: noc:Noc_0536 pheromone shutdown protein; TraB family protein complement(1597818..1599011) Alkalilimnicola ehrlichii MLHE-1 4269586 YP_742234.1 CDS Mlg_1395 NC_008340.1 1599151 1599927 D PFAM: protein of unknown function DUF980; KEGG: dar:Daro_2829 protein of unknown function DUF980; hypothetical protein 1599151..1599927 Alkalilimnicola ehrlichii MLHE-1 4270617 YP_742235.1 CDS Mlg_1396 NC_008340.1 1600034 1601932 R PFAM: AMP-dependent synthetase and ligase; KEGG: vpa:VP1644 PrpE protein; AMP-dependent synthetase/ligase complement(1600034..1601932) Alkalilimnicola ehrlichii MLHE-1 4270618 YP_742236.1 CDS Mlg_1397 NC_008340.1 1602342 1603145 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_0833 flagellar motor protein; MotA/TolQ/ExbB proton channel 1602342..1603145 Alkalilimnicola ehrlichii MLHE-1 4270619 YP_742237.1 CDS Mlg_1398 NC_008340.1 1603151 1603951 D PFAM: OmpA/MotB domain protein; KEGG: noc:Noc_0834 flagellar motor protein; OmpA/MotB domain-containing protein 1603151..1603951 Alkalilimnicola ehrlichii MLHE-1 4270620 YP_742238.1 CDS Mlg_1399 NC_008340.1 1603920 1604990 R TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; KEGG: cvi:CV0544 regulatory gene required to sense and relay the nitrogen status; nifR3 family TIM-barrel protein complement(1603920..1604990) Alkalilimnicola ehrlichii MLHE-1 4270621 YP_742239.1 CDS Mlg_1400 NC_008340.1 1605273 1606232 D Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase 1605273..1606232 Alkalilimnicola ehrlichii MLHE-1 4270622 YP_742240.1 CDS Mlg_1401 NC_008340.1 1606305 1607087 D PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: lpp:lpp0765 hypothetical protein; short-chain dehydrogenase/reductase SDR 1606305..1607087 Alkalilimnicola ehrlichii MLHE-1 4270623 YP_742241.1 CDS Mlg_1402 NC_008340.1 1607134 1607646 D KEGG: neu:NE1493 cytochrome c, class IC:cytochrome c, class I; hypothetical protein 1607134..1607646 Alkalilimnicola ehrlichii MLHE-1 4270624 YP_742242.1 CDS Mlg_1403 NC_008340.1 1607646 1608563 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: xcb:XC_3738 transcriptional regulator; LysR family transcriptional regulator 1607646..1608563 Alkalilimnicola ehrlichii MLHE-1 4270625 YP_742243.1 CDS Mlg_1404 NC_008340.1 1608673 1609212 D PFAM: cytochrome B561; KEGG: hch:HCH_01820 cytochrome b561; cytochrome B561 1608673..1609212 Alkalilimnicola ehrlichii MLHE-1 4270626 YP_742244.1 CDS Mlg_1405 NC_008340.1 1609303 1609908 D PFAM: YceI family protein; KEGG: ilo:IL2562 hypothetical protein; YceI family protein 1609303..1609908 Alkalilimnicola ehrlichii MLHE-1 4270627 YP_742245.1 CDS Mlg_1406 NC_008340.1 1609955 1610542 D PFAM: Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: gsu:GSU0570 hypothetical protein; type 11 methyltransferase 1609955..1610542 Alkalilimnicola ehrlichii MLHE-1 4270628 YP_742246.1 CDS Mlg_1407 NC_008340.1 1610550 1612016 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: cvi:CV0433 outer membrane efflux protein; RND efflux system outer membrane lipoprotein complement(1610550..1612016) Alkalilimnicola ehrlichii MLHE-1 4270629 YP_742247.1 CDS Mlg_1408 NC_008340.1 1612009 1615185 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: rpc:RPC_4635 hydrophobe/amphiphile efflux-1 HAE1; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(1612009..1615185) Alkalilimnicola ehrlichii MLHE-1 4270630 YP_742248.1 CDS Mlg_1409 NC_008340.1 1615190 1616347 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dvu:DVU0060 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(1615190..1616347) Alkalilimnicola ehrlichii MLHE-1 4270631 YP_742249.1 CDS Mlg_1410 NC_008340.1 1616480 1617166 D PFAM: regulatory protein, TetR; Tetracycline transcriptional repressor MAATS-type, C-terminal domain protein; KEGG: pae:PA3574 probable transcriptional regulator; TetR family transcriptional regulator 1616480..1617166 Alkalilimnicola ehrlichii MLHE-1 4270632 YP_742250.1 CDS Mlg_1411 NC_008340.1 1617402 1618382 R PFAM: OmpA/MotB domain protein; KEGG: nwi:Nwi_1814 OmpA/MotB; OmpA/MotB domain-containing protein complement(1617402..1618382) Alkalilimnicola ehrlichii MLHE-1 4270633 YP_742251.1 CDS Mlg_1412 NC_008340.1 1618506 1619522 R PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: gsu:GSU0573 alcohol dehydrogenase, zinc-containing; alcohol dehydrogenase complement(1618506..1619522) Alkalilimnicola ehrlichii MLHE-1 4270410 YP_742252.1 CDS Mlg_1413 NC_008340.1 1619632 1620777 D PFAM: aminotransferase, class V; KEGG: pae:PA2958 hypothetical protein; class V aminotransferase 1619632..1620777 Alkalilimnicola ehrlichii MLHE-1 4270411 YP_742253.1 CDS Mlg_1414 NC_008340.1 1620804 1621166 R PFAM: type IV pilus assembly PilZ; KEGG: pfo:Pfl_4150 type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(1620804..1621166) Alkalilimnicola ehrlichii MLHE-1 4270412 YP_742254.1 CDS Mlg_1415 NC_008340.1 1621238 1622251 R TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: mca:MCA1995 DNA polymerase III, delta prime subunit; DNA polymerase III subunit delta' complement(1621238..1622251) Alkalilimnicola ehrlichii MLHE-1 4270413 YP_742255.1 CDS Mlg_1416 NC_008340.1 1622251 1622904 R PFAM: thymidylate kinase; KEGG: pae:PA2962 thymidylate kinase; thymidylate kinase complement(1622251..1622904) Alkalilimnicola ehrlichii MLHE-1 4270414 YP_742256.1 CDS Mlg_1417 NC_008340.1 1622901 1623917 R PFAM: aminodeoxychorismate lyase; KEGG: csa:Csal_1605 aminodeoxychorismate lyase; aminodeoxychorismate lyase complement(1622901..1623917) Alkalilimnicola ehrlichii MLHE-1 4270415 YP_742257.1 CDS Mlg_1418 NC_008340.1 1623914 1624771 R PFAM: aminotransferase, class IV; KEGG: pae:PA2964 4-amino-4-deoxychorismate lyase; aminodeoxychorismate lyase complement(1623914..1624771) Alkalilimnicola ehrlichii MLHE-1 4270416 YP_742258.1 CDS Mlg_1419 NC_008340.1 1624786 1626024 R PFAM: beta-ketoacyl synthase; KEGG: bte:BTH_I1721 3-oxoacyl-(acyl-carrier-protein) synthase II; 3-oxoacyl-ACP synthase complement(1624786..1626024) Alkalilimnicola ehrlichii MLHE-1 4270417 YP_742259.1 CDS acpP NC_008340.1 1626146 1626385 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(1626146..1626385) Alkalilimnicola ehrlichii MLHE-1 4270418 YP_742260.1 CDS Mlg_1421 NC_008340.1 1626514 1627269 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: tcx:Tcr_0712 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-ACP reductase complement(1626514..1627269) Alkalilimnicola ehrlichii MLHE-1 4270419 YP_742261.1 CDS Mlg_1422 NC_008340.1 1627291 1628235 R TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; KEGG: ppr:PBPRA1194 malonyl Coa-acyl carrier protein transacylase; ACP S-malonyltransferase complement(1627291..1628235) Alkalilimnicola ehrlichii MLHE-1 4270420 YP_742262.1 CDS Mlg_1423 NC_008340.1 1628334 1629305 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase complement(1628334..1629305) Alkalilimnicola ehrlichii MLHE-1 4270421 YP_742263.1 CDS Mlg_1424 NC_008340.1 1629302 1630330 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; glycerol-3-phosphate acyltransferase PlsX complement(1629302..1630330) Alkalilimnicola ehrlichii MLHE-1 4270422 YP_742264.1 CDS rpmF NC_008340.1 1630405 1630584 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(1630405..1630584) Alkalilimnicola ehrlichii MLHE-1 4270423 YP_742265.1 CDS Mlg_1426 NC_008340.1 1630618 1631163 R PFAM: protein of unknown function DUF177; KEGG: sde:Sde_1625 hypothetical protein; hypothetical protein complement(1630618..1631163) Alkalilimnicola ehrlichii MLHE-1 4270424 YP_742266.1 CDS Mlg_1427 NC_008340.1 1631285 1631884 D TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: pfo:Pfl_4162 Maf-like protein; maf protein 1631285..1631884 Alkalilimnicola ehrlichii MLHE-1 4270425 YP_742267.1 CDS Mlg_1428 NC_008340.1 1631895 1632830 R PFAM: peptidase S49; KEGG: noc:Noc_2845 peptidase S49, SppA; peptidase S49 complement(1631895..1632830) Alkalilimnicola ehrlichii MLHE-1 4270426 YP_742268.1 CDS Mlg_1429 NC_008340.1 1632838 1633821 R TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: mca:MCA1479 ribosomal large subunit pseudouridine synthase C; ribosomal large subunit pseudouridine synthase C complement(1632838..1633821) Alkalilimnicola ehrlichii MLHE-1 4270427 YP_742269.1 CDS Mlg_1430 NC_008340.1 1634203 1637424 D TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: csa:Csal_1592 ribonuclease, Rne/Rng family; ribonuclease E 1634203..1637424 Alkalilimnicola ehrlichii MLHE-1 4269240 YP_742270.1 CDS Mlg_1431 NC_008340.1 1637508 1638005 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: nmu:Nmul_A1063 protein tyrosine phosphatase; protein tyrosine phosphatase complement(1637508..1638005) Alkalilimnicola ehrlichii MLHE-1 4269241 YP_742271.1 CDS Mlg_1432 NC_008340.1 1638156 1638425 D hypothetical protein 1638156..1638425 Alkalilimnicola ehrlichii MLHE-1 4269242 YP_742272.1 CDS Mlg_1433 NC_008340.1 1638422 1639201 R KEGG: ecs:ECs1001 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase); TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase; 3-deoxy-D-manno-octulosonate cytidylyltransferase complement(1638422..1639201) Alkalilimnicola ehrlichii MLHE-1 4269243 YP_742273.1 CDS lpxK NC_008340.1 1639205 1640200 R transfers the gamma-phosphate of ATP to the 4' position of a tetraacyldisaccharide 1-phosphate intermediate to form tetraacyldisaccharide 1,4'-bis-phosphate; tetraacyldisaccharide 4'-kinase complement(1639205..1640200) Alkalilimnicola ehrlichii MLHE-1 4269244 YP_742274.1 CDS Mlg_1435 NC_008340.1 1640241 1640654 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: hch:HCH_02701 biopolymer transport protein; biopolymer transport protein ExbD/TolR complement(1640241..1640654) Alkalilimnicola ehrlichii MLHE-1 4269245 YP_742275.1 CDS Mlg_1436 NC_008340.1 1640656 1641312 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: noc:Noc_2673 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(1640656..1641312) Alkalilimnicola ehrlichii MLHE-1 4269246 YP_742276.1 CDS Mlg_1437 NC_008340.1 1641369 1643621 R PFAM: ComEC/Rec2-related protein; KEGG: noc:Noc_2672 DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-like protein complement(1641369..1643621) Alkalilimnicola ehrlichii MLHE-1 4269247 YP_742277.1 CDS Mlg_1438 NC_008340.1 1643736 1644326 D KEGG: pae:PA2985 hypothetical protein; hypothetical protein 1643736..1644326 Alkalilimnicola ehrlichii MLHE-1 4269248 YP_742278.1 CDS Mlg_1439 NC_008340.1 1644341 1645051 R KEGG: mca:MCA2625 lipoprotein ABC transporter, ATP-binding protein LolD; TIGRFAM: lipoprotein releasing system, ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; lipoprotein releasing system, ATP-binding protein complement(1644341..1645051) Alkalilimnicola ehrlichii MLHE-1 4269249 YP_742279.1 CDS Mlg_1440 NC_008340.1 1645044 1646291 R TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: noc:Noc_2669 lipoprotein releasing system, transmembrane protein, LolC/E family; LolC/E family lipoprotein releasing system, transmembrane protein complement(1645044..1646291) Alkalilimnicola ehrlichii MLHE-1 4269250 YP_742280.1 CDS Mlg_1441 NC_008340.1 1646316 1647032 R PFAM: sugar fermentation stimulation protein; KEGG: noc:Noc_2279 sugar fermentation stimulation protein; sugar fermentation stimulation protein complement(1646316..1647032) Alkalilimnicola ehrlichii MLHE-1 4269251 YP_742281.1 CDS Mlg_1442 NC_008340.1 1647158 1647475 D KEGG: sde:Sde_1807 hypothetical protein; hypothetical protein 1647158..1647475 Alkalilimnicola ehrlichii MLHE-1 4269252 YP_742282.1 CDS Mlg_1443 NC_008340.1 1647504 1648601 D PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: gme:Gmet_0711 porphyromonas-type peptidyl-arginine deiminase; peptidyl-arginine deiminase 1647504..1648601 Alkalilimnicola ehrlichii MLHE-1 4269253 YP_742283.1 CDS Mlg_1444 NC_008340.1 1648646 1649530 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: gsu:GSU1027 glycosyl hydrolase, family 10; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1648646..1649530 Alkalilimnicola ehrlichii MLHE-1 4269254 YP_742284.1 CDS Mlg_1445 NC_008340.1 1649534 1650664 D PFAM: DAHP synthetase I/KDSA; KEGG: nmu:Nmul_A0091 3-deoxy-7-phosphoheptulonate synthase; DAHP synthetase I/KDSA 1649534..1650664 Alkalilimnicola ehrlichii MLHE-1 4269255 YP_742285.1 CDS Mlg_1446 NC_008340.1 1650839 1651057 D TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1, IF1 family protein; KEGG: noc:Noc_2598 translation initiation factor IF-1; translation initiation factor 1 1650839..1651057 Alkalilimnicola ehrlichii MLHE-1 4269256 YP_742286.1 CDS Mlg_1447 NC_008340.1 1651112 1653382 R KEGG: mca:MCA1789 ATP-dependent Clp protease, ATP-binding subunit ClpA; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding subunit ClpA complement(1651112..1653382) Alkalilimnicola ehrlichii MLHE-1 4270228 YP_742287.1 CDS clpS NC_008340.1 1653533 1653853 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(1653533..1653853) Alkalilimnicola ehrlichii MLHE-1 4270229 YP_742288.1 CDS Mlg_1449 NC_008340.1 1654151 1655161 D PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: xcv:XCV0263 transcriptional regulator, LysR family; LysR family transcriptional regulator 1654151..1655161 Alkalilimnicola ehrlichii MLHE-1 4270230 YP_742289.1 CDS Mlg_1450 NC_008340.1 1655161 1655631 D PFAM: NUDIX hydrolase; KEGG: mfa:Mfla_2114 NUDIX hydrolase; NUDIX hydrolase 1655161..1655631 Alkalilimnicola ehrlichii MLHE-1 4270231 YP_742290.1 CDS Mlg_1451 NC_008340.1 1655667 1656767 D PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PP-loop domain protein; KEGG: bps:BPSL2889 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1655667..1656767 Alkalilimnicola ehrlichii MLHE-1 4270232 YP_742291.1 CDS Mlg_1452 NC_008340.1 1656782 1657399 D HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 1656782..1657399 Alkalilimnicola ehrlichii MLHE-1 4270233 YP_742292.2 CDS Mlg_1453 NC_008340.1 1657518 1660097 R catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase complement(1657518..1660097) Alkalilimnicola ehrlichii MLHE-1 4270234 YP_742293.1 CDS Mlg_1454 NC_008340.1 1660337 1663081 D TIGRFAM: aconitate hydratase 1; PFAM: aconitate hydratase domain protein; KEGG: hch:HCH_06874 aconitate hydratase 1; aconitate hydratase 1 1660337..1663081 Alkalilimnicola ehrlichii MLHE-1 4270235 YP_742294.1 CDS Mlg_1455 NC_008340.1 1663218 1664192 D PFAM: OmpA/MotB domain protein; KEGG: hch:HCH_04990 outer membrane protein and related peptidoglycan-associated (LipO)protein; OmpA/MotB domain-containing protein 1663218..1664192 Alkalilimnicola ehrlichii MLHE-1 4270236 YP_742295.1 CDS Mlg_1456 NC_008340.1 1664210 1664635 D KEGG: sat:SYN_02998 esterase; esterase 1664210..1664635 Alkalilimnicola ehrlichii MLHE-1 4270237 YP_742296.1 CDS Mlg_1457 NC_008340.1 1664657 1665535 R TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: mag:amb2392 predicted pyrophosphatase; nucleotide pyrophosphohydrolase complement(1664657..1665535) Alkalilimnicola ehrlichii MLHE-1 4270238 YP_742297.1 CDS Mlg_1458 NC_008340.1 1665624 1666253 D PFAM: regulatory protein, TetR; KEGG: sth:STH2189 TetR family transcriptional regulator; TetR family transcriptional regulator 1665624..1666253 Alkalilimnicola ehrlichii MLHE-1 4270239 YP_742298.1 CDS Mlg_1459 NC_008340.1 1666289 1666975 R PFAM: Glutathione S-transferase, N-terminal domain; KEGG: bur:Bcep18194_A5556 glutathione S-transferase-like; glutathione S-transferase-like protein complement(1666289..1666975) Alkalilimnicola ehrlichii MLHE-1 4270240 YP_742299.1 CDS Mlg_1460 NC_008340.1 1667021 1667428 R PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein complement(1667021..1667428) Alkalilimnicola ehrlichii MLHE-1 4270241 YP_742300.1 CDS ispG NC_008340.1 1667469 1668716 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1667469..1668716 Alkalilimnicola ehrlichii MLHE-1 4270242 YP_742301.1 CDS Mlg_1462 NC_008340.1 1668830 1669276 R KEGG: sil:SPO1614 hypothetical protein; hypothetical protein complement(1668830..1669276) Alkalilimnicola ehrlichii MLHE-1 4270243 YP_742302.1 CDS Mlg_1463 NC_008340.1 1669378 1670400 R PFAM: dihydroorotate dehydrogenase; KEGG: mfa:Mfla_0506 dihydroorotate oxidase; dihydroorotate oxidase complement(1669378..1670400) Alkalilimnicola ehrlichii MLHE-1 4270244 YP_742303.1 CDS Mlg_1464 NC_008340.1 1670581 1671354 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: eba:ebA4391 chromosome partitioning protein, ParA family protein; cobyrinic acid a,c-diamide synthase 1670581..1671354 Alkalilimnicola ehrlichii MLHE-1 4270245 YP_742304.1 CDS Mlg_1465 NC_008340.1 1671388 1672590 D TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: hch:HCH_02605 membrane-bound lytic murein transglycosylase B; lytic murein transglycosylase 1671388..1672590 Alkalilimnicola ehrlichii MLHE-1 4269257 YP_742305.1 CDS Mlg_1466 NC_008340.1 1672587 1673099 R KEGG: dsy:DSY1917 hypothetical protein; hypothetical protein complement(1672587..1673099) Alkalilimnicola ehrlichii MLHE-1 4269258 YP_742306.1 CDS Mlg_1467 NC_008340.1 1673096 1673686 R KEGG: csa:Csal_2331 hypothetical protein; hypothetical protein complement(1673096..1673686) Alkalilimnicola ehrlichii MLHE-1 4269259 YP_742307.1 CDS Mlg_1468 NC_008340.1 1673724 1674311 R PFAM: LemA family protein; KEGG: noc:Noc_1832 LemA; LemA family protein complement(1673724..1674311) Alkalilimnicola ehrlichii MLHE-1 4269260 YP_742308.1 CDS Mlg_1469 NC_008340.1 1674315 1675286 R PFAM: Patatin; KEGG: nmu:Nmul_A0164 patatin; patatin complement(1674315..1675286) Alkalilimnicola ehrlichii MLHE-1 4269261 YP_742309.1 CDS Mlg_1470 NC_008340.1 1675293 1675982 R KEGG: pae:PA5496 hypothetical protein; hypothetical protein complement(1675293..1675982) Alkalilimnicola ehrlichii MLHE-1 4269262 YP_742310.1 CDS Mlg_1471 NC_008340.1 1676030 1679317 R KEGG: mca:MCA2543 ribonucleoside reductase, intein-containing; TIGRFAM: Protein splicing (intein) site; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; SMART: Hedgehog/intein hint domain protein; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent complement(1676030..1679317) Alkalilimnicola ehrlichii MLHE-1 4269263 YP_742311.1 CDS Mlg_1472 NC_008340.1 1679762 1682110 D PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: eba:ebA6834 conserved hypothetical protein, s1 RNA binding domain protein; RNA-binding S1 domain-containing protein 1679762..1682110 Alkalilimnicola ehrlichii MLHE-1 4269264 YP_742312.1 CDS Mlg_1473 NC_008340.1 1682107 1684461 D PFAM: helicase domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; KEGG: vpa:VP1259 ATP-dependent helicase; helicase 1682107..1684461 Alkalilimnicola ehrlichii MLHE-1 4269265 YP_742313.1 CDS Mlg_1474 NC_008340.1 1684502 1685497 R KEGG: csa:Csal_2568 transcriptional regulator-like protein; transcriptional regulator-like protein complement(1684502..1685497) Alkalilimnicola ehrlichii MLHE-1 4269266 YP_742314.1 CDS Mlg_1475 NC_008340.1 1685772 1686995 D KEGG: csa:Csal_1457 hypothetical protein; hypothetical protein 1685772..1686995 Alkalilimnicola ehrlichii MLHE-1 4269267 YP_742315.1 CDS Mlg_1476 NC_008340.1 1687037 1689061 D KEGG: csa:Csal_1456 hypothetical protein; hypothetical protein 1687037..1689061 Alkalilimnicola ehrlichii MLHE-1 4269268 YP_742316.1 CDS Mlg_1477 NC_008340.1 1689062 1689421 R hypothetical protein complement(1689062..1689421) Alkalilimnicola ehrlichii MLHE-1 4269269 YP_742317.1 CDS Mlg_1478 NC_008340.1 1689621 1689908 D KEGG: tcx:Tcr_1933 uncharacterized conserved coiled coil protein; hypothetical protein 1689621..1689908 Alkalilimnicola ehrlichii MLHE-1 4269270 YP_742318.1 CDS Mlg_1479 NC_008340.1 1690318 1690518 R PFAM: carbon storage regulator; KEGG: mca:MCA0391 carbon storage regulator; carbon storage regulator CsrA complement(1690318..1690518) Alkalilimnicola ehrlichii MLHE-1 4269952 YP_742319.1 CDS Mlg_1480 NC_008340.1 1690676 1691926 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(1690676..1691926) Alkalilimnicola ehrlichii MLHE-1 4269953 YP_742320.1 CDS alaS NC_008340.1 1691995 1694604 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1691995..1694604) Alkalilimnicola ehrlichii MLHE-1 4269954 YP_742321.1 CDS recX NC_008340.1 1694653 1695111 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(1694653..1695111) Alkalilimnicola ehrlichii MLHE-1 4269955 YP_742322.1 CDS recA NC_008340.1 1695119 1696162 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(1695119..1696162) Alkalilimnicola ehrlichii MLHE-1 4269956 YP_742323.1 CDS Mlg_1484 NC_008340.1 1696296 1696802 R PFAM: CinA domain protein; KEGG: tbd:Tbd_2195 CinA protein; CinA domain-containing protein complement(1696296..1696802) Alkalilimnicola ehrlichii MLHE-1 4269957 YP_742324.1 CDS Mlg_1485 NC_008340.1 1696849 1699485 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1696849..1699485 Alkalilimnicola ehrlichii MLHE-1 4269958 YP_742325.1 CDS Mlg_1486 NC_008340.1 1699593 1699916 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: xac:XAC1762 ferredoxin; 4Fe-4S ferredoxin 1699593..1699916 Alkalilimnicola ehrlichii MLHE-1 4269959 YP_742326.1 CDS Mlg_1487 NC_008340.1 1700743 1701480 R KEGG: noc:Noc_2253 thiol-disulfide interchange protein DsbC; thiol-disulfide interchange protein DsbC complement(1700743..1701480) Alkalilimnicola ehrlichii MLHE-1 4269960 YP_742327.1 CDS Mlg_1488 NC_008340.1 1701577 1702491 R TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase; phage integrase domain protein SAM domain protein; KEGG: pae:PA3738 integrase/recombinase XerD; tyrosine recombinase XerD complement(1701577..1702491) Alkalilimnicola ehrlichii MLHE-1 4269961 YP_742328.1 CDS Mlg_1489 NC_008340.1 1702466 1703263 R PFAM: band 7 protein; KEGG: tbd:Tbd_0490 stomatin-like transmembrane protein, band 7 protein; hypothetical protein complement(1702466..1703263) Alkalilimnicola ehrlichii MLHE-1 4269962 YP_742329.1 CDS Mlg_1490 NC_008340.1 1703405 1704487 D KEGG: xac:XAC0889 hypothetical protein; RNA 2'-O-ribose methyltransferase 1703405..1704487 Alkalilimnicola ehrlichii MLHE-1 4269963 YP_742330.1 CDS Mlg_1491 NC_008340.1 1704569 1704988 D PFAM: Fe-S metabolism associated SufE; KEGG: rru:Rru_A3475 Fe-S metabolism associated SufE; Fe-S metabolism associated SufE 1704569..1704988 Alkalilimnicola ehrlichii MLHE-1 4269964 YP_742331.1 CDS Mlg_1492 NC_008340.1 1705019 1705186 D hypothetical protein 1705019..1705186 Alkalilimnicola ehrlichii MLHE-1 4269965 YP_742332.1 CDS Mlg_1493 NC_008340.1 1705222 1706226 D PFAM: alpha/beta hydrolase fold; KEGG: mag:amb4214 lysophospholipase; alpha/beta hydrolase fold protein 1705222..1706226 Alkalilimnicola ehrlichii MLHE-1 4269966 YP_742333.1 CDS Mlg_1494 NC_008340.1 1706496 1707866 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: rru:Rru_A2307 twin-arginine translocation pathway signal; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1706496..1707866 Alkalilimnicola ehrlichii MLHE-1 4269967 YP_742334.1 CDS Mlg_1495 NC_008340.1 1707909 1708298 D hypothetical protein 1707909..1708298 Alkalilimnicola ehrlichii MLHE-1 4269968 YP_742335.1 CDS Mlg_1496 NC_008340.1 1708469 1709137 D PFAM: Haem oxygenase; KEGG: dra:DRA0052m heme oxygenase; Heme oxygenase 1708469..1709137 Alkalilimnicola ehrlichii MLHE-1 4269853 YP_742336.1 CDS Mlg_1497 NC_008340.1 1709115 1711184 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-2 domain protein; KEGG: rsp:RSP_4191 phytochrome sensor diguanylate cyclase/phosphodiesterase; GAF sensor protein 1709115..1711184 Alkalilimnicola ehrlichii MLHE-1 4269854 YP_742337.1 CDS Mlg_1498 NC_008340.1 1711289 1712263 D PFAM: alpha/beta hydrolase fold; KEGG: sru:SRU_2682 3-oxoadipate enol-lactone hydrolase; alpha/beta hydrolase 1711289..1712263 Alkalilimnicola ehrlichii MLHE-1 4269855 YP_742338.1 CDS Mlg_1499 NC_008340.1 1712245 1713576 R KEGG: nmu:Nmul_A1979 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: protein of unknown function UPF0004; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein YliG complement(1712245..1713576) Alkalilimnicola ehrlichii MLHE-1 4269856 YP_742339.1 CDS Mlg_1500 NC_008340.1 1713725 1714381 R KEGG: sme:SMc00257 probable outer-membrane protein; outer-membrane protein complement(1713725..1714381) Alkalilimnicola ehrlichii MLHE-1 4269857 YP_742340.1 CDS Mlg_1501 NC_008340.1 1714510 1715598 D PFAM: FAD dependent oxidoreductase; KEGG: bga:BG0778 hypothetical protein; FAD dependent oxidoreductase 1714510..1715598 Alkalilimnicola ehrlichii MLHE-1 4269858 YP_742341.1 CDS Mlg_1502 NC_008340.1 1715622 1716203 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(1715622..1716203) Alkalilimnicola ehrlichii MLHE-1 4269859 YP_742342.1 CDS Mlg_1503 NC_008340.1 1716242 1717246 D TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: csa:Csal_1269 GTPase EngC; ribosome small subunit-dependent GTPase A 1716242..1717246 Alkalilimnicola ehrlichii MLHE-1 4269860 YP_742343.1 CDS Mlg_1504 NC_008340.1 1717262 1718119 R PFAM: OmpA/MotB domain protein; KEGG: pfo:Pfl_0513 OmpA/MotB; OmpA/MotB domain-containing protein complement(1717262..1718119) Alkalilimnicola ehrlichii MLHE-1 4269861 YP_742344.1 CDS Mlg_1505 NC_008340.1 1718124 1718981 R KEGG: rso:RSp1411 probable chemotaxis (motility protein A) transmembrane; chemotaxis (motility protein A) transmembrane complement(1718124..1718981) Alkalilimnicola ehrlichii MLHE-1 4269862 YP_742345.1 CDS Mlg_1506 NC_008340.1 1719102 1720547 D KEGG: sde:Sde_2025 signal transduction protein; hypothetical protein 1719102..1720547 Alkalilimnicola ehrlichii MLHE-1 4269863 YP_742346.1 CDS Mlg_1507 NC_008340.1 1720553 1720897 R PFAM: histidine triad (HIT) protein; KEGG: ade:Adeh_0180 histidine triad (HIT) protein; histidine triad (HIT) protein complement(1720553..1720897) Alkalilimnicola ehrlichii MLHE-1 4269864 YP_742347.1 CDS recR NC_008340.1 1720914 1721513 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(1720914..1721513) Alkalilimnicola ehrlichii MLHE-1 4269865 YP_742348.1 CDS Mlg_1509 NC_008340.1 1721521 1721844 R PFAM: conserved hypothetical protein 103; KEGG: plu:plu3840 hypothetical protein; hypothetical protein complement(1721521..1721844) Alkalilimnicola ehrlichii MLHE-1 4269866 YP_742349.1 CDS Mlg_1510 NC_008340.1 1721875 1723821 R KEGG: pae:PA1532 DNA polymerase subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; DNA polymerase III, tau subunit/DNA polymerase III subunit gamma complement(1721875..1723821) Alkalilimnicola ehrlichii MLHE-1 4269867 YP_742350.1 CDS Mlg_1511 NC_008340.1 1724089 1724460 D PFAM: protein of unknown function DUF37; KEGG: csa:Csal_1884 protein of unknown function DUF37; hypothetical protein 1724089..1724460 Alkalilimnicola ehrlichii MLHE-1 4269067 YP_742351.1 CDS Mlg_1512 NC_008340.1 1724451 1724786 R PFAM: Rhodanese domain protein; KEGG: ade:Adeh_0436 rhodanese-like; rhodanese domain-containing protein complement(1724451..1724786) Alkalilimnicola ehrlichii MLHE-1 4269068 YP_742352.1 CDS Mlg_1513 NC_008340.1 1724773 1725447 R hypothetical protein complement(1724773..1725447) Alkalilimnicola ehrlichii MLHE-1 4269069 YP_742353.1 CDS Mlg_1514 NC_008340.1 1725695 1727182 D catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 1725695..1727182 Alkalilimnicola ehrlichii MLHE-1 4269070 YP_742354.1 CDS Mlg_1515 NC_008340.1 1727200 1727784 D PFAM: rRNA methylase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sru:SRU_1525 rRNA methylase superfamily; rRNA methylase 1727200..1727784 Alkalilimnicola ehrlichii MLHE-1 4269071 YP_742355.1 CDS Mlg_1516 NC_008340.1 1727819 1728715 R PFAM: UspA domain protein; KEGG: plt:Plut_0297 hypothetical protein; UspA domain-containing protein complement(1727819..1728715) Alkalilimnicola ehrlichii MLHE-1 4269072 YP_742356.1 CDS Mlg_1517 NC_008340.1 1728708 1731149 R PFAM: peptidase S16, lon domain protein; KEGG: mca:MCA0853 ATP-dependent protease; peptidase S16, lon domain-containing protein complement(1728708..1731149) Alkalilimnicola ehrlichii MLHE-1 4269073 YP_742357.1 CDS Mlg_1518 NC_008340.1 1731293 1732531 R PFAM: toxic anion resistance family protein; KEGG: hch:HCH_05411 uncharacterized protein involved in tellurite resistance; toxic anion resistance family protein complement(1731293..1732531) Alkalilimnicola ehrlichii MLHE-1 4269074 YP_742358.1 CDS Mlg_1519 NC_008340.1 1732548 1733483 R hypothetical protein complement(1732548..1733483) Alkalilimnicola ehrlichii MLHE-1 4269075 YP_742359.1 CDS Mlg_1520 NC_008340.1 1733735 1734211 R KEGG: pol:Bpro_0272 cupin region; cupin region complement(1733735..1734211) Alkalilimnicola ehrlichii MLHE-1 4269076 YP_742360.1 CDS Mlg_1521 NC_008340.1 1734271 1734984 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: tdn:Tmden_0645 diguanylate cyclase (GGDEF domain) with PAS/PAC sensor; diguanylate cyclase 1734271..1734984 Alkalilimnicola ehrlichii MLHE-1 4269077 YP_742361.1 CDS Mlg_1522 NC_008340.1 1735184 1737355 D KEGG: vch:VC1560 catalase/peroxidase; TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 1735184..1737355 Alkalilimnicola ehrlichii MLHE-1 4269078 YP_742362.1 CDS Mlg_1523 NC_008340.1 1737486 1737875 R hypothetical protein complement(1737486..1737875) Alkalilimnicola ehrlichii MLHE-1 4269079 YP_742363.1 CDS Mlg_1524 NC_008340.1 1738030 1738842 R hypothetical protein complement(1738030..1738842) Alkalilimnicola ehrlichii MLHE-1 4269080 YP_742364.1 CDS Mlg_1525 NC_008340.1 1739328 1740050 D PFAM: glycosyl transferase, family 2; KEGG: nmu:Nmul_A1366 glycosyl transferase, family 2; glycosyl transferase 1739328..1740050 Alkalilimnicola ehrlichii MLHE-1 4269081 YP_742365.1 CDS mogA NC_008340.1 1740140 1740745 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 1740140..1740745 Alkalilimnicola ehrlichii MLHE-1 4269082 YP_742366.1 CDS Mlg_1527 NC_008340.1 1740885 1741184 D hypothetical protein 1740885..1741184 Alkalilimnicola ehrlichii MLHE-1 4269083 YP_742367.1 CDS Mlg_1528 NC_008340.1 1741238 1742125 R PFAM: alpha/beta hydrolase fold; KEGG: rpc:RPC_1203 dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like; alpha/beta hydrolase complement(1741238..1742125) Alkalilimnicola ehrlichii MLHE-1 4269084 YP_742368.1 CDS Mlg_1529 NC_008340.1 1742504 1744021 R PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: pol:Bpro_0339 integrase, catalytic region; integrase catalytic subunit complement(1742504..1744021) Alkalilimnicola ehrlichii MLHE-1 4270534 YP_742369.1 CDS Mlg_1530 NC_008340.1 1744128 1745699 D PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22); integrase catalytic subunit 1744128..1745699 Alkalilimnicola ehrlichii MLHE-1 4270535 YP_742370.1 CDS Mlg_1531 NC_008340.1 1745686 1746426 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: mta:Moth_2240 IstB-like ATP-binding protein; IstB ATP binding domain-containing protein 1745686..1746426 Alkalilimnicola ehrlichii MLHE-1 4270536 YP_742371.1 CDS Mlg_1532 NC_008340.1 1746503 1748020 D PFAM: Integrase, catalytic region; transposase IS3/IS911 family protein; KEGG: pol:Bpro_0339 integrase, catalytic region; integrase catalytic subunit 1746503..1748020 Alkalilimnicola ehrlichii MLHE-1 4270537 YP_742372.1 CDS Mlg_1533 NC_008340.1 1748061 1748975 D PFAM: phage integrase; KEGG: lpn:lpg1229 site specific recombinase; phage integrase 1748061..1748975 Alkalilimnicola ehrlichii MLHE-1 4270538 YP_742373.1 CDS Mlg_1534 NC_008340.1 1749103 1749591 D PFAM: transposase IS3/IS911 family protein; KEGG: sdn:Sden_2169 hypothetical protein; transposase IS3/IS911 family protein 1749103..1749591 Alkalilimnicola ehrlichii MLHE-1 4270539 YP_742374.1 CDS Mlg_1535 NC_008340.1 1749840 1750196 D PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like; IS66 Orf2 family protein 1749840..1750196 Alkalilimnicola ehrlichii MLHE-1 4270540 YP_742375.1 CDS Mlg_1536 NC_008340.1 1750241 1751833 D PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2; transposase IS66 1750241..1751833 Alkalilimnicola ehrlichii MLHE-1 4270541 YP_742376.1 CDS Mlg_1537 NC_008340.1 1752015 1752209 D KEGG: rfr:Rfer_1364 hypothetical protein; hypothetical protein 1752015..1752209 Alkalilimnicola ehrlichii MLHE-1 4270542 YP_742377.1 CDS Mlg_1538 NC_008340.1 1752206 1755097 D PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD/DEAH box helicase domain protein; KEGG: eba:ebA666 helicase (SNF2 family); helicase 1752206..1755097 Alkalilimnicola ehrlichii MLHE-1 4270543 YP_742378.1 CDS Mlg_1539 NC_008340.1 1755159 1758392 D PFAM: DNA methylase N-4/N-6 domain protein; KEGG: eba:ebA670 probable methylation subunit, type III restriction-modification system; DNA methylase N-4/N-6 domain-containing protein 1755159..1758392 Alkalilimnicola ehrlichii MLHE-1 4270544 YP_742379.1 CDS Mlg_1540 NC_008340.1 1758389 1761220 D PFAM: SMC domain protein; PHP C-terminal domain protein; KEGG: mca:MCA3009 PHP N-terminal domain protein; SMC domain-containing protein 1758389..1761220 Alkalilimnicola ehrlichii MLHE-1 4270545 YP_742380.1 CDS Mlg_1541 NC_008340.1 1761224 1762495 D PFAM: AAA-4 family protein; KEGG: mca:MCA3010 hypothetical protein; transcriptional regulator 1761224..1762495 Alkalilimnicola ehrlichii MLHE-1 4270546 YP_742381.1 CDS Mlg_1542 NC_008340.1 1762498 1765812 D SMART: DEAD/DEAH box helicase domain protein; KEGG: eba:ebA675 conserved hypothetical protein, potential type III restriction enzyme; DEAD/DEAH box helicase domain-containing protein 1762498..1765812 Alkalilimnicola ehrlichii MLHE-1 4270547 YP_742382.1 CDS Mlg_1545 NC_008340.1 1767893 1769086 R KEGG: noc:Noc_2963 hypothetical protein; hypothetical protein complement(1767893..1769086) Alkalilimnicola ehrlichii MLHE-1 4270550 YP_742383.1 CDS Mlg_1546 NC_008340.1 1769083 1770222 R KEGG: noc:Noc_2964 hypothetical protein; hypothetical protein complement(1769083..1770222) Alkalilimnicola ehrlichii MLHE-1 4269919 YP_742384.1 CDS Mlg_1547 NC_008340.1 1770255 1772018 R hypothetical protein complement(1770255..1772018) Alkalilimnicola ehrlichii MLHE-1 4269920 YP_742385.1 CDS Mlg_1548 NC_008340.1 1772139 1772492 D KEGG: chy:CHY_0840 lipoprotein; lipoprotein 1772139..1772492 Alkalilimnicola ehrlichii MLHE-1 4269921 YP_742386.1 CDS Mlg_1549 NC_008340.1 1772511 1773233 D PFAM: glycosyl transferase, family 2; KEGG: nmu:Nmul_A1366 glycosyl transferase, family 2; glycosyl transferase 1772511..1773233 Alkalilimnicola ehrlichii MLHE-1 4269922 YP_742387.1 CDS mogA NC_008340.1 1773324 1773929 D forms a trimer; related to eukaryotic protein gephyrin; functions during molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MogA 1773324..1773929 Alkalilimnicola ehrlichii MLHE-1 4269923 YP_742388.1 CDS Mlg_1551 NC_008340.1 1774056 1774370 D hypothetical protein 1774056..1774370 Alkalilimnicola ehrlichii MLHE-1 4269924 YP_742389.1 CDS Mlg_1552 NC_008340.1 1774639 1775220 R PFAM: protein of unknown function DUF335, SprT; SMART: protein of unknown function SprT; KEGG: sdy:SDY_3128 hypothetical protein; hypothetical protein complement(1774639..1775220) Alkalilimnicola ehrlichii MLHE-1 4269926 YP_742390.1 CDS Mlg_1553 NC_008340.1 1775217 1776908 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(1775217..1776908) Alkalilimnicola ehrlichii MLHE-1 4269927 YP_742391.1 CDS Mlg_1554 NC_008340.1 1777016 1777633 R hypothetical protein complement(1777016..1777633) Alkalilimnicola ehrlichii MLHE-1 4269928 YP_742392.1 CDS Mlg_1555 NC_008340.1 1777890 1778765 R PFAM: phosphate-selective porin O and P; KEGG: xcb:XC_1529 polyphosphate-selective porin O; phosphate-selective porin O and P complement(1777890..1778765) Alkalilimnicola ehrlichii MLHE-1 4269929 YP_742393.1 CDS Mlg_1556 NC_008340.1 1779546 1780061 D hypothetical protein 1779546..1780061 Alkalilimnicola ehrlichii MLHE-1 4269930 YP_742394.1 CDS Mlg_1557 NC_008340.1 1780158 1781246 R PFAM: protein of unknown function DUF59; KEGG: noc:Noc_0972 protein of unknown function DUF59; hypothetical protein complement(1780158..1781246) Alkalilimnicola ehrlichii MLHE-1 4269931 YP_742395.1 CDS Mlg_1558 NC_008340.1 1781323 1782051 R TIGRFAM: Twin-arginine translocation pathway signal; KEGG: aae:aq_234 Rieske-I iron sulfur protein; hypothetical protein complement(1781323..1782051) Alkalilimnicola ehrlichii MLHE-1 4269932 YP_742396.1 CDS Mlg_1559 NC_008340.1 1782150 1782575 R PFAM: molybdopterin biosynthesis MoaE; KEGG: aci:ACIAD1904 molybdopterin converting factor, large subunit; molybdopterin synthase subunit MoaE complement(1782150..1782575) Alkalilimnicola ehrlichii MLHE-1 4269933 YP_742397.1 CDS Mlg_1560 NC_008340.1 1782610 1785663 R KEGG: gme:Gmet_3085 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(1782610..1785663) Alkalilimnicola ehrlichii MLHE-1 4269934 YP_742398.1 CDS Mlg_1561 NC_008340.1 1785882 1786631 D PFAM: LytTr DNA-binding region; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: bxe:Bxe_A2142 transcriptional regulator, LytR/AlgR family; PAS/PAC sensor protein 1785882..1786631 Alkalilimnicola ehrlichii MLHE-1 4269935 YP_742399.1 CDS Mlg_1562 NC_008340.1 1786835 1787704 D PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: bxe:Bxe_A2144 carbon monoxide dehydrogenase, medium subunit (CoxM); carbon monoxide dehydrogenase, medium subunit 1786835..1787704 Alkalilimnicola ehrlichii MLHE-1 4270584 YP_742400.1 CDS Mlg_1563 NC_008340.1 1787717 1788214 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bxe:Bxe_A2145 carbon monoxide dehydrogenase, small subunit (CoxS); carbon monoxide dehydrogenase, small subunit 1787717..1788214 Alkalilimnicola ehrlichii MLHE-1 4270585 YP_742401.1 CDS Mlg_1564 NC_008340.1 1788275 1791358 D TIGRFAM: carbon-monoxide dehydrogenase, large subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; carbon monoxide dehydrogenase subunit G; KEGG: bxe:Bxe_A2146 carbon monoxide dehydrogenase form I, large subunit; carbon monoxide dehydrogenase, large subunit apoprotein 1788275..1791358 Alkalilimnicola ehrlichii MLHE-1 4270586 YP_742402.1 CDS Mlg_1565 NC_008340.1 1791361 1792242 D PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: bxe:Bxe_A2148 MoxR-like ATPase, CoxD; ATPase 1791361..1792242 Alkalilimnicola ehrlichii MLHE-1 4270587 YP_742403.1 CDS Mlg_1566 NC_008340.1 1792239 1793372 D PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor, type A; KEGG: bxe:Bxe_C0034 carbon monoxide dehydrogenase, CoxE subunit; von Willebrand factor A 1792239..1793372 Alkalilimnicola ehrlichii MLHE-1 4270588 YP_742404.1 CDS Mlg_1567 NC_008340.1 1793391 1794284 D PFAM: protein of unknown function DUF182; KEGG: bxe:Bxe_C0035 carbon monoxide dehydrogenase, CoxF subunit; hypothetical protein 1793391..1794284 Alkalilimnicola ehrlichii MLHE-1 4270589 YP_742405.1 CDS Mlg_1568 NC_008340.1 1794281 1794883 D PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: mta:Moth_2003 uncharacterized MobA-related protein-like; molybdenum cofactor cytidylyltransferase 1794281..1794883 Alkalilimnicola ehrlichii MLHE-1 4270590 YP_742406.1 CDS Mlg_1569 NC_008340.1 1794880 1795695 D PFAM: protein of unknown function DUF182; KEGG: ape:APE2227 xanthine dehydrogenase accessory factor; hypothetical protein 1794880..1795695 Alkalilimnicola ehrlichii MLHE-1 4270591 YP_742407.1 CDS Mlg_1570 NC_008340.1 1795700 1796134 D PFAM: nitrogen-fixing NifU domain protein; KEGG: bps:BPSL2373 NifU family protein; NifU domain-containing protein 1795700..1796134 Alkalilimnicola ehrlichii MLHE-1 4270592 YP_742408.1 CDS Mlg_1571 NC_008340.1 1796128 1797891 R PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: tte:TTE1262 predicted ATPases involved in pili biogenesis, PilB homologs; type II secretion system protein E complement(1796128..1797891) Alkalilimnicola ehrlichii MLHE-1 4270593 YP_742409.1 CDS Mlg_1572 NC_008340.1 1797888 1799612 R KEGG: syf:Synpcc7942_1158 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(1797888..1799612) Alkalilimnicola ehrlichii MLHE-1 4270594 YP_742410.1 CDS Mlg_1573 NC_008340.1 1799734 1800933 R TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: tbd:Tbd_1581 secretion protein HlyD; RND family efflux transporter MFP subunit complement(1799734..1800933) Alkalilimnicola ehrlichii MLHE-1 4270595 YP_742411.1 CDS Mlg_1574 NC_008340.1 1800938 1803307 R PFAM: protein of unknown function DUF214; KEGG: tbd:Tbd_1582 ABC transporter, permease; hypothetical protein complement(1800938..1803307) Alkalilimnicola ehrlichii MLHE-1 4270596 YP_742412.1 CDS Mlg_1575 NC_008340.1 1803307 1804371 R KEGG: hch:HCH_05283 hypothetical protein; hypothetical protein complement(1803307..1804371) Alkalilimnicola ehrlichii MLHE-1 4270597 YP_742413.1 CDS Mlg_1576 NC_008340.1 1804365 1805075 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tbd:Tbd_1583 ABC transporter ATPase; ABC transporter-like protein complement(1804365..1805075) Alkalilimnicola ehrlichii MLHE-1 4270598 YP_742414.1 CDS Mlg_1577 NC_008340.1 1805112 1807244 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; KEGG: rpc:RPC_1332 oligopeptidase B; oligopeptidase B complement(1805112..1807244) Alkalilimnicola ehrlichii MLHE-1 4270599 YP_742415.1 CDS Mlg_1578 NC_008340.1 1807245 1808831 R PFAM: AMP-dependent synthetase and ligase; KEGG: hma:rrnAC0573 long-chain fatty-acid-CoA ligase; AMP-dependent synthetase/ligase complement(1807245..1808831) Alkalilimnicola ehrlichii MLHE-1 4270600 YP_742416.1 CDS Mlg_1579 NC_008340.1 1809017 1809817 D PFAM: TatD-related deoxyribonuclease; KEGG: xcb:XC_0310 type V secretory pathway protein; Sec-independent protein translocase TatD 1809017..1809817 Alkalilimnicola ehrlichii MLHE-1 4268550 YP_742417.1 CDS Mlg_1580 NC_008340.1 1809845 1810876 R TIGRFAM: TIM-barrel protein, yjbN family; PFAM: dihydrouridine synthase, DuS; KEGG: noc:Noc_2960 dihydrouridine synthase TIM-barrel protein YjbN; tRNA-dihydrouridine synthase A complement(1809845..1810876) Alkalilimnicola ehrlichii MLHE-1 4268551 YP_742418.1 CDS Mlg_1581 NC_008340.1 1811021 1811263 D PFAM: glutaredoxin 2; KEGG: mca:MCA1544 hypothetical protein; glutaredoxin 2 1811021..1811263 Alkalilimnicola ehrlichii MLHE-1 4268552 YP_742419.1 CDS Mlg_1582 NC_008340.1 1811260 1811823 D KEGG: csa:Csal_1565 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 1811260..1811823 Alkalilimnicola ehrlichii MLHE-1 4268553 YP_742420.1 CDS Mlg_1583 NC_008340.1 1811893 1812180 D KEGG: csa:Csal_1564 hypothetical protein; hypothetical protein 1811893..1812180 Alkalilimnicola ehrlichii MLHE-1 4268554 YP_742421.1 CDS Mlg_1584 NC_008340.1 1812241 1813230 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: csa:Csal_1566 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein complement(1812241..1813230) Alkalilimnicola ehrlichii MLHE-1 4268555 YP_742422.1 CDS Mlg_1585 NC_008340.1 1813286 1813885 R PFAM: NUDIX hydrolase; KEGG: eba:ebA5123 hypothetical protein; NUDIX hydrolase complement(1813286..1813885) Alkalilimnicola ehrlichii MLHE-1 4268556 YP_742423.1 CDS Mlg_1586 NC_008340.1 1813896 1814891 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(1813896..1814891) Alkalilimnicola ehrlichii MLHE-1 4268557 YP_742424.1 CDS Mlg_1587 NC_008340.1 1814990 1816177 D SMART: PDZ/DHR/GLGF domain protein; KEGG: nmu:Nmul_A2382 PDZ/DHR/GLGF; PDZ/DHR/GLGF domain-containing protein 1814990..1816177 Alkalilimnicola ehrlichii MLHE-1 4268558 YP_742425.1 CDS Mlg_1588 NC_008340.1 1816357 1816689 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: High potential iron-sulfur protein; KEGG: rso:RSc3086 probable high potential iron-sulfur (hipip) signal peptide protein; high potential iron-sulfur protein 1816357..1816689 Alkalilimnicola ehrlichii MLHE-1 4268559 YP_742426.1 CDS Mlg_1589 NC_008340.1 1816900 1817226 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: High potential iron-sulfur protein; KEGG: rso:RSc3086 probable high potential iron-sulfur (hipip) signal peptide protein; high potential iron-sulfur protein 1816900..1817226 Alkalilimnicola ehrlichii MLHE-1 4268560 YP_742427.1 CDS Mlg_1590 NC_008340.1 1817385 1817858 D KEGG: pae:PA1040 hypothetical protein; hypothetical protein 1817385..1817858 Alkalilimnicola ehrlichii MLHE-1 4268561 YP_742428.1 CDS Mlg_1591 NC_008340.1 1817806 1818699 R PFAM: alpha/beta hydrolase fold; KEGG: rru:Rru_A0559 alpha/beta hydrolase fold; alpha/beta hydrolase complement(1817806..1818699) Alkalilimnicola ehrlichii MLHE-1 4268562 YP_742429.1 CDS pepN NC_008340.1 1818823 1821468 D TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; KEGG: mca:MCA0774 aminopeptidase N; aminopeptidase 1818823..1821468 Alkalilimnicola ehrlichii MLHE-1 4268563 YP_742430.1 CDS Mlg_1593 NC_008340.1 1821513 1823639 D KEGG: csa:Csal_1519 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; peptidase 1821513..1823639 Alkalilimnicola ehrlichii MLHE-1 4268564 YP_742431.1 CDS Mlg_1594 NC_008340.1 1823720 1824847 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: cvi:CV2082 enoyl-CoA hydratase; enoyl-CoA hydratase 1823720..1824847 Alkalilimnicola ehrlichii MLHE-1 4268565 YP_742432.1 CDS Mlg_1595 NC_008340.1 1825145 1825501 D hypothetical protein 1825145..1825501 Alkalilimnicola ehrlichii MLHE-1 4268566 YP_742433.1 CDS Mlg_1596 NC_008340.1 1825507 1826340 R KEGG: cvi:CV0192 hypothetical protein; hypothetical protein complement(1825507..1826340) Alkalilimnicola ehrlichii MLHE-1 4268567 YP_742434.1 CDS Mlg_1597 NC_008340.1 1826517 1827395 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: pae:PA3474 conserved hypothetical protein; hypothetical protein complement(1826517..1827395) Alkalilimnicola ehrlichii MLHE-1 4268295 YP_742435.1 CDS Mlg_1598 NC_008340.1 1827466 1827915 D TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; KEGG: rme:Rmet_0126 transcriptional regulators, TraR/DksA family; TraR/DksA family transcriptional regulator 1827466..1827915 Alkalilimnicola ehrlichii MLHE-1 4268296 YP_742436.1 CDS Mlg_1599 NC_008340.1 1827982 1829484 R PFAM: GTP-binding protein, HSR1-related; KEGG: ppr:PBPRA1571 hypothetical protein; HSR1-like GTP-binding protein complement(1827982..1829484) Alkalilimnicola ehrlichii MLHE-1 4268297 YP_742437.1 CDS Mlg_1600 NC_008340.1 1829514 1830734 R KEGG: ana:all3530 hypothetical protein; hypothetical protein complement(1829514..1830734) Alkalilimnicola ehrlichii MLHE-1 4268298 YP_742438.1 CDS Mlg_1601 NC_008340.1 1830731 1833394 R PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; KEGG: aae:aq_999 long-chain-fatty-acid CoA ligase; AMP-dependent synthetase/ligase complement(1830731..1833394) Alkalilimnicola ehrlichii MLHE-1 4268299 YP_742439.1 CDS Mlg_1602 NC_008340.1 1833615 1834361 D PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: bms:BR1098 membrane protein; multiple antibiotic resistance (MarC)-like protein 1833615..1834361 Alkalilimnicola ehrlichii MLHE-1 4268300 YP_742440.1 CDS Mlg_1604 NC_008340.1 1834613 1834993 D PFAM: phosphoesterase, PA-phosphatase related; KEGG: xcb:XC_3277 hypothetical protein; PA-phosphatase-like phosphoesterase 1834613..1834993 Alkalilimnicola ehrlichii MLHE-1 4268302 YP_742441.1 CDS Mlg_1605 NC_008340.1 1834976 1835530 R TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: mca:MCA2450 molybdopterin-guanine dinucleotide biosynthesis protein MobB; molybdopterin-guanine dinucleotide biosynthesis protein B complement(1834976..1835530) Alkalilimnicola ehrlichii MLHE-1 4268303 YP_742442.1 CDS Mlg_1606 NC_008340.1 1835534 1836607 R KEGG: csa:Csal_2123 glycosyl transferase, group 1; group 1 glycosyl transferase complement(1835534..1836607) Alkalilimnicola ehrlichii MLHE-1 4268304 YP_742443.1 CDS Mlg_1607 NC_008340.1 1836604 1837380 R PFAM: glutamine amidotransferase class-I; KEGG: mlo:mll8746 hypothetical protein; glutamine amidotransferase class-I complement(1836604..1837380) Alkalilimnicola ehrlichii MLHE-1 4268305 YP_742444.1 CDS Mlg_1608 NC_008340.1 1837512 1837766 D PFAM: Smr protein/MutS2; KEGG: deh:cbdb_A1156 hypothetical protein; Smr protein/MutS2 1837512..1837766 Alkalilimnicola ehrlichii MLHE-1 4268306 YP_742445.1 CDS Mlg_1609 NC_008340.1 1837768 1838187 R PFAM: Class I peptide chain release factor; KEGG: ppr:PBPRB0779 hypothetical protein; class I peptide chain release factor complement(1837768..1838187) Alkalilimnicola ehrlichii MLHE-1 4268307 YP_742446.1 CDS Mlg_1610 NC_008340.1 1838201 1838668 R KEGG: mca:MCA0019 hypothetical protein; hypothetical protein complement(1838201..1838668) Alkalilimnicola ehrlichii MLHE-1 4268308 YP_742447.1 CDS Mlg_1611 NC_008340.1 1838750 1839622 R PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: nwi:Nwi_1896 UbiE/COQ5 methyltransferase; type 11 methyltransferase complement(1838750..1839622) Alkalilimnicola ehrlichii MLHE-1 4268309 YP_742448.1 CDS Mlg_1612 NC_008340.1 1839920 1840366 R PFAM: protein of unknown function DUF188; KEGG: hch:HCH_06960 hypothetical protein; hypothetical protein complement(1839920..1840366) Alkalilimnicola ehrlichii MLHE-1 4269344 YP_742449.1 CDS Mlg_1613 NC_008340.1 1840434 1841717 R PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: rme:Rmet_0456 DEAD/DEAH box helicase-like protein; DEAD/DEAH box helicase domain-containing protein complement(1840434..1841717) Alkalilimnicola ehrlichii MLHE-1 4269345 YP_742450.1 CDS Mlg_1614 NC_008340.1 1841923 1844019 D KEGG: nme:NMB1278 site-specific recombinase; site-specific recombinase 1841923..1844019 Alkalilimnicola ehrlichii MLHE-1 4269346 YP_742451.1 CDS Mlg_1615 NC_008340.1 1844102 1845283 D catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; cystathionine gamma-synthase 1844102..1845283 Alkalilimnicola ehrlichii MLHE-1 4269347 YP_742452.1 CDS Mlg_1616 NC_008340.1 1845373 1845852 R TIGRFAM: YbhB and YbcL; PFAM: PEBP family protein; KEGG: hch:HCH_02825 phospholipid-binding protein; PBP family phospholipid-binding protein complement(1845373..1845852) Alkalilimnicola ehrlichii MLHE-1 4269348 YP_742453.1 CDS Mlg_1617 NC_008340.1 1846011 1846307 D PFAM: KaiB domain protein; KEGG: syn:sll0486 circadian clock protein KaiB homolog; KaiB domain-containing protein 1846011..1846307 Alkalilimnicola ehrlichii MLHE-1 4269349 YP_742454.1 CDS Mlg_1618 NC_008340.1 1846372 1847319 D KEGG: mag:amb1535 response regulator containing a CheY-like receiver domain and a GGDEF domain; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 1846372..1847319 Alkalilimnicola ehrlichii MLHE-1 4269350 YP_742455.1 CDS Mlg_1619 NC_008340.1 1847467 1849365 D KEGG: rfr:Rfer_1021 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase 1847467..1849365 Alkalilimnicola ehrlichii MLHE-1 4269351 YP_742456.1 CDS Mlg_1620 NC_008340.1 1849446 1851125 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; MASE1 domain protein; KEGG: rpa:RPA4247 two component low oxygen sensor histidine kinase with PAS domains, FixL; periplasmic sensor signal transduction histidine kinase 1849446..1851125 Alkalilimnicola ehrlichii MLHE-1 4269352 YP_742457.1 CDS Mlg_1621 NC_008340.1 1851118 1851723 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: mlo:mll6606 response regulator FixJ; LuxR family transcriptional regulator 1851118..1851723 Alkalilimnicola ehrlichii MLHE-1 4269353 YP_742458.1 CDS Mlg_1622 NC_008340.1 1851867 1854341 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: pca:Pcar_2558 signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like; diguanylate cyclase/phosphodiesterase 1851867..1854341 Alkalilimnicola ehrlichii MLHE-1 4269354 YP_742459.1 CDS Mlg_1623 NC_008340.1 1854338 1855738 D PFAM: Na+/solute symporter; KEGG: hch:HCH_06692 Na+/proline symporter; Na+/solute symporter 1854338..1855738 Alkalilimnicola ehrlichii MLHE-1 4269355 YP_742460.1 CDS Mlg_1624 NC_008340.1 1855735 1856709 D KEGG: dsy:DSY3490 hypothetical protein; hypothetical protein 1855735..1856709 Alkalilimnicola ehrlichii MLHE-1 4269356 YP_742461.1 CDS Mlg_1625 NC_008340.1 1856731 1857300 R PFAM: Carboxymuconolactone decarboxylase; KEGG: rfr:Rfer_3389 alkylhydroperoxidase; carboxymuconolactone decarboxylase complement(1856731..1857300) Alkalilimnicola ehrlichii MLHE-1 4269357 YP_742462.1 CDS Mlg_1626 NC_008340.1 1857484 1857873 R hypothetical protein complement(1857484..1857873) Alkalilimnicola ehrlichii MLHE-1 4269358 YP_742463.1 CDS Mlg_1627 NC_008340.1 1858085 1862110 R KEGG: noc:Noc_1301 ATP-dependent helicase HrpA; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase domain protein; helicase-associated domain protein; protein of unknown function DUF1605; SMART: AAA ATPase; DEAD/DEAH box helicase domain protein; ATP-dependent helicase HrpA complement(1858085..1862110) Alkalilimnicola ehrlichii MLHE-1 4269359 YP_742464.1 CDS Mlg_1628 NC_008340.1 1862143 1862715 R TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: pst:PSPTO2610 phosphoesterase; phosphodiesterase complement(1862143..1862715) Alkalilimnicola ehrlichii MLHE-1 4269360 YP_742465.1 CDS thrH NC_008340.1 1862720 1863334 R catalyzes the formation of serine from phosphoserine; also has phosphoserine:homoserine phosphotransferase activity; phosphoserine phosphatase complement(1862720..1863334) Alkalilimnicola ehrlichii MLHE-1 4269361 YP_742466.1 CDS Mlg_1630 NC_008340.1 1864096 1864767 D PFAM: protein of unknown function UPF0005; KEGG: eba:ebA4143 hypothetical protein; hypothetical protein 1864096..1864767 Alkalilimnicola ehrlichii MLHE-1 4270351 YP_742467.1 CDS Mlg_1631 NC_008340.1 1864904 1866481 R PFAM: Sporulation domain protein; SMART: AAA ATPase; KEGG: pfo:Pfl_0412 hypothetical protein; sporulation domain-containing protein complement(1864904..1866481) Alkalilimnicola ehrlichii MLHE-1 4270352 YP_742468.1 CDS Mlg_1632 NC_008340.1 1866746 1867621 R PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: mlo:mlr1196 probable transcriptional regulator; AraC family transcriptional regulator complement(1866746..1867621) Alkalilimnicola ehrlichii MLHE-1 4270354 YP_742469.1 CDS Mlg_1633 NC_008340.1 1867698 1868927 R PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_2645 methyltransferase type 11; type 11 methyltransferase complement(1867698..1868927) Alkalilimnicola ehrlichii MLHE-1 4270355 YP_742470.1 CDS Mlg_1634 NC_008340.1 1868945 1869634 R PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO5216 RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 factor complement(1868945..1869634) Alkalilimnicola ehrlichii MLHE-1 4270356 YP_742471.1 CDS Mlg_1635 NC_008340.1 1869786 1870019 R KEGG: tfu:Tfu_0549 anti-sigma factor; transmembrane anti-sigma factor complement(1869786..1870019) Alkalilimnicola ehrlichii MLHE-1 4270357 YP_742472.1 CDS Mlg_1636 NC_008340.1 1870237 1871022 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pol:Bpro_2645 methyltransferase type 11; type 11 methyltransferase 1870237..1871022 Alkalilimnicola ehrlichii MLHE-1 4270358 YP_742473.1 CDS Mlg_1637 NC_008340.1 1871158 1871895 D PFAM: glutamine amidotransferase class-I; KEGG: xfa:XF0560 glutamine amidotransferase; glutamine amidotransferase class-I 1871158..1871895 Alkalilimnicola ehrlichii MLHE-1 4270359 YP_742474.1 CDS Mlg_1638 NC_008340.1 1872017 1875883 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; FAD linked oxidase domain protein; KEGG: mfa:Mfla_0476 FAD linked oxidase-like protein; FAD linked oxidase domain-containing protein 1872017..1875883 Alkalilimnicola ehrlichii MLHE-1 4270360 YP_742475.1 CDS Mlg_1639 NC_008340.1 1875837 1877237 R TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ppr:PBPRB1001 hypothetical protein; MATE efflux family protein complement(1875837..1877237) Alkalilimnicola ehrlichii MLHE-1 4270361 YP_742476.1 CDS Mlg_1640 NC_008340.1 1877374 1878255 D PFAM: protein of unknown function DUF151; KEGG: dde:Dde_2379 hypothetical protein; hypothetical protein 1877374..1878255 Alkalilimnicola ehrlichii MLHE-1 4270362 YP_742477.1 CDS Mlg_1641 NC_008340.1 1878292 1878843 R PFAM: response regulator receiver; helix-turn-helix, Fis-type; KEGG: bxe:Bxe_A4382 two component transcriptional regulator, fis family; response regulator receiver protein complement(1878292..1878843) Alkalilimnicola ehrlichii MLHE-1 4270363 YP_742478.1 CDS Mlg_1642 NC_008340.1 1878840 1880279 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: neu:NE1314 probable two-component sensor; periplasmic sensor signal transduction histidine kinase complement(1878840..1880279) Alkalilimnicola ehrlichii MLHE-1 4270364 YP_742479.1 CDS Mlg_1643 NC_008340.1 1880357 1882057 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_1999 ABC transporter related; ABC transporter-like protein 1880357..1882057 Alkalilimnicola ehrlichii MLHE-1 4270365 YP_742480.1 CDS Mlg_1644 NC_008340.1 1882054 1883727 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: csa:Csal_1998 ABC transporter related; ABC transporter-like protein 1882054..1883727 Alkalilimnicola ehrlichii MLHE-1 4270366 YP_742481.1 CDS Mlg_1645 NC_008340.1 1883724 1886882 R KEGG: rru:Rru_A0612 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(1883724..1886882) Alkalilimnicola ehrlichii MLHE-1 4270246 YP_742482.1 CDS Mlg_1646 NC_008340.1 1887193 1889382 D catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 1887193..1889382 Alkalilimnicola ehrlichii MLHE-1 4270247 YP_742483.1 CDS Mlg_1647 NC_008340.1 1889488 1890519 D SMART: Rhodanese domain protein; KEGG: sco:SCO5854 thiosulfate sulfurtransferase; rhodanese domain-containing protein 1889488..1890519 Alkalilimnicola ehrlichii MLHE-1 4270248 YP_742484.1 CDS Mlg_1648 NC_008340.1 1890586 1891374 R KEGG: pfo:Pfl_0128 hypothetical protein; hypothetical protein complement(1890586..1891374) Alkalilimnicola ehrlichii MLHE-1 4270249 YP_742485.1 CDS Mlg_1649 NC_008340.1 1891374 1891982 R KEGG: tbd:Tbd_2490 hypothetical protein; hypothetical protein complement(1891374..1891982) Alkalilimnicola ehrlichii MLHE-1 4270250 YP_742486.1 CDS Mlg_1650 NC_008340.1 1891986 1892654 R KEGG: tbd:Tbd_2487 hypothetical protein; hypothetical protein complement(1891986..1892654) Alkalilimnicola ehrlichii MLHE-1 4270251 YP_742487.1 CDS Mlg_1651 NC_008340.1 1892657 1892899 R hypothetical protein complement(1892657..1892899) Alkalilimnicola ehrlichii MLHE-1 4270252 YP_742488.1 CDS Mlg_1652 NC_008340.1 1892896 1893765 R KEGG: mag:amb3366 probable taurine catabolism dioxygenase; taurine catabolism dioxygenase complement(1892896..1893765) Alkalilimnicola ehrlichii MLHE-1 4270253 YP_742489.1 CDS Mlg_1653 NC_008340.1 1893988 1895259 D KEGG: mag:amb3367 sulfite reductase, dissimilatory-type alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type alpha subunit 1893988..1895259 Alkalilimnicola ehrlichii MLHE-1 4270254 YP_742490.1 CDS Mlg_1654 NC_008340.1 1895293 1896375 D KEGG: mag:amb3368 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; sulfite reductase, dissimilatory-type subunit beta 1895293..1896375 Alkalilimnicola ehrlichii MLHE-1 4270255 YP_742491.1 CDS Mlg_1655 NC_008340.1 1896388 1896747 D PFAM: DsrE family protein; KEGG: tbd:Tbd_2483 DsrE protein; DsrE family protein 1896388..1896747 Alkalilimnicola ehrlichii MLHE-1 4270256 YP_742492.1 CDS Mlg_1656 NC_008340.1 1896764 1897150 D PFAM: DsrE family protein; KEGG: mag:amb3370 uncharacterized protein involved in the oxidation of intracellular sulfur; DsrE family protein 1896764..1897150 Alkalilimnicola ehrlichii MLHE-1 4270257 YP_742493.1 CDS Mlg_1657 NC_008340.1 1897164 1897463 D PFAM: DsrH family protein; KEGG: cch:Cag_1950 DsrH protein; DsrH family protein 1897164..1897463 Alkalilimnicola ehrlichii MLHE-1 4270258 YP_742494.1 CDS Mlg_1658 NC_008340.1 1897520 1897852 D PFAM: DsrC family protein; KEGG: tbd:Tbd_2480 sulfite reductase; DsrC family protein 1897520..1897852 Alkalilimnicola ehrlichii MLHE-1 4270259 YP_742495.1 CDS Mlg_1659 NC_008340.1 1897898 1898665 D PFAM: Nitrate reductase, gamma subunit; KEGG: tbd:Tbd_2479 DsrM protein; nitrate reductase subunit gamma 1897898..1898665 Alkalilimnicola ehrlichii MLHE-1 4270260 YP_742496.1 CDS Mlg_1660 NC_008340.1 1898662 1900209 D KEGG: mag:amb3374 Fe-S oxidoreductase; Fe-S oxidoreductase 1898662..1900209 Alkalilimnicola ehrlichii MLHE-1 4270261 YP_742497.1 CDS Mlg_1661 NC_008340.1 1900257 1902203 D unknown function; glutamate synthase (NADPH) small subunit 1900257..1902203 Alkalilimnicola ehrlichii MLHE-1 4270262 YP_742498.1 CDS Mlg_1662 NC_008340.1 1902222 1902788 D KEGG: mag:amb3376 Hdr-like menaquinol oxidoreductase cytochrome c subunit; hypothetical protein 1902222..1902788 Alkalilimnicola ehrlichii MLHE-1 4270263 YP_742499.1 CDS Mlg_1663 NC_008340.1 1902778 1903563 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mag:amb3377 Fe-S-cluster-containing hydrogenase components 1; 4Fe-4S ferredoxin 1902778..1903563 Alkalilimnicola ehrlichii MLHE-1 4268895 YP_742500.1 CDS Mlg_1664 NC_008340.1 1903576 1904853 D PFAM: Polysulphide reductase, NrfD; KEGG: mag:amb3378 Hdr-like menaquinol oxidoreductase integral membrane subunit; polysulfide reductase NrfD 1903576..1904853 Alkalilimnicola ehrlichii MLHE-1 4268896 YP_742501.1 CDS Mlg_1665 NC_008340.1 1904869 1905867 D PFAM: glycosyl transferase, family 3; KEGG: ppu:PP3997 hypothetical protein; hypothetical protein 1904869..1905867 Alkalilimnicola ehrlichii MLHE-1 4268897 YP_742502.1 CDS Mlg_1666 NC_008340.1 1905884 1907302 D TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: mag:amb3622 cobyrinic acid a,c-diamide synthase; hydrogenobyrinic acid a,c-diamide synthase /cobyrinate a,c-diamide synthase 1905884..1907302 Alkalilimnicola ehrlichii MLHE-1 4268898 YP_742503.1 CDS Mlg_1667 NC_008340.1 1907333 1908604 D PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: tbd:Tbd_2201 probable transmembrane protein; hypothetical protein 1907333..1908604 Alkalilimnicola ehrlichii MLHE-1 4268899 YP_742504.1 CDS Mlg_1668 NC_008340.1 1908624 1910378 D TIGRFAM: sulfate transporter; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: eba:ebA4484 sulfate transporter; sulfate transporter 1908624..1910378 Alkalilimnicola ehrlichii MLHE-1 4268900 YP_742505.1 CDS Mlg_1669 NC_008340.1 1910450 1911115 R PFAM: regulatory protein, LuxR; response regulator receiver; Bacterio-opsin activator, HTH domain protein; sigma-70 region 4 domain protein; KEGG: tbd:Tbd_2464 two component transcriptional regulator, LuxR family; LuxR family transcriptional regulator complement(1910450..1911115) Alkalilimnicola ehrlichii MLHE-1 4268901 YP_742506.1 CDS Mlg_1670 NC_008340.1 1911115 1912455 R PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: rme:Rmet_2086 signal transduction histidine kinase, nitrate/nitrite-specific, NarQ; nitrate/nitrite-specific signal transduction histidine kinase NarQ complement(1911115..1912455) Alkalilimnicola ehrlichii MLHE-1 4268902 YP_742507.1 CDS Mlg_1671 NC_008340.1 1912869 1913066 D hypothetical protein 1912869..1913066 Alkalilimnicola ehrlichii MLHE-1 4268903 YP_742508.1 CDS Mlg_1672 NC_008340.1 1913110 1913340 D PFAM: SirA family protein; KEGG: tbd:Tbd_0574 hypothetical protein; SirA family protein 1913110..1913340 Alkalilimnicola ehrlichii MLHE-1 4268904 YP_742509.1 CDS Mlg_1673 NC_008340.1 1913434 1914072 D PFAM: cytochrome c, class I; KEGG: vpa:VP1221 cytochrome subunit of sulfide dehydrogenase precursor; cytochrome c, class I 1913434..1914072 Alkalilimnicola ehrlichii MLHE-1 4268905 YP_742510.1 CDS Mlg_1674 NC_008340.1 1914100 1915413 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cch:Cag_2004 sulfide dehydrogenase, flavoprotein subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1914100..1915413 Alkalilimnicola ehrlichii MLHE-1 4268906 YP_742511.1 CDS Mlg_1675 NC_008340.1 1915502 1918426 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: tbd:Tbd_0570 DMSO reductase chain A; molybdopterin oxidoreductase Fe4S4 region 1915502..1918426 Alkalilimnicola ehrlichii MLHE-1 4268907 YP_742512.1 CDS Mlg_1676 NC_008340.1 1918423 1919115 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tbd:Tbd_0571 DMSO reductase chain B; 4Fe-4S ferredoxin 1918423..1919115 Alkalilimnicola ehrlichii MLHE-1 4268908 YP_742513.1 CDS Mlg_1677 NC_008340.1 1919130 1920077 D PFAM: DMSO reductase anchor subunit (DmsC); KEGG: tbd:Tbd_0572 DMSO reductase chain C; DMSO reductase anchor subunit DmsC 1919130..1920077 Alkalilimnicola ehrlichii MLHE-1 4268909 YP_742514.1 CDS Mlg_1678 NC_008340.1 1920168 1920758 D PFAM: NapC/NirT cytochrome c domain protein; KEGG: rpc:RPC_1875 NapC/NirT cytochrome c-like; NapC/NirT cytochrome c domain-containing protein 1920168..1920758 Alkalilimnicola ehrlichii MLHE-1 4268910 YP_742515.1 CDS Mlg_1679 NC_008340.1 1920918 1922363 D TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mfa:Mfla_0652 uroporphyrin-III C-methyltransferase; precorrin-2 dehydrogenase 1920918..1922363 Alkalilimnicola ehrlichii MLHE-1 4268911 YP_742516.1 CDS Mlg_1680 NC_008340.1 1922376 1922840 D PFAM: Rhodanese domain protein; KEGG: plt:Plut_0032 rhodanese-like; rhodanese domain-containing protein 1922376..1922840 Alkalilimnicola ehrlichii MLHE-1 4268775 YP_742517.1 CDS Mlg_1681 NC_008340.1 1922889 1923356 D TIGRFAM: Twin-arginine translocation pathway signal; KEGG: tcx:Tcr_0603 sulfur oxidation protein SoxY-like; thiosulfate-binding protein SoxY 1922889..1923356 Alkalilimnicola ehrlichii MLHE-1 4268776 YP_742518.1 CDS Mlg_1682 NC_008340.1 1923376 1923663 D KEGG: bja:bll1012 sulfur oxidation protein; sulfur compound chelating protein SoxZ 1923376..1923663 Alkalilimnicola ehrlichii MLHE-1 4268777 YP_742519.1 CDS Mlg_1683 NC_008340.1 1923668 1924378 D KEGG: rme:Rmet_4060 heme exporter protein CcmA; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase; heme exporter protein CcmA 1923668..1924378 Alkalilimnicola ehrlichii MLHE-1 4268778 YP_742520.1 CDS Mlg_1684 NC_008340.1 1924388 1925056 D TIGRFAM: heme exporter protein CcmB; PFAM: cytochrome c-type biogenesis protein CcmB; KEGG: dar:Daro_3992 cytochrome c-type biogenesis protein CcmB; heme exporter protein CcmB 1924388..1925056 Alkalilimnicola ehrlichii MLHE-1 4268779 YP_742521.1 CDS Mlg_1685 NC_008340.1 1925106 1925921 D TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; KEGG: rme:Rmet_4058 heme exporter protein CcmC; heme exporter protein CcmC 1925106..1925921 Alkalilimnicola ehrlichii MLHE-1 4268780 YP_742522.1 CDS Mlg_1686 NC_008340.1 1926061 1926537 D PFAM: CcmE/CycJ protein; KEGG: rfr:Rfer_0041 CcmE/CycJ protein; CcmE/CycJ protein 1926061..1926537 Alkalilimnicola ehrlichii MLHE-1 4268781 YP_742523.1 CDS Mlg_1687 NC_008340.1 1926552 1928552 D TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein; KEGG: neu:NE0768 cytochrome c-type biogenesis protein (CcmF); cytochrome c-type biogenesis protein CcmF 1926552..1928552 Alkalilimnicola ehrlichii MLHE-1 4268782 YP_742524.1 CDS Mlg_1688 NC_008340.1 1928546 1929073 D TIGRFAM: periplasmic protein thiol--disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein; KEGG: mca:MCA0417 thiol:disulfide interchange protein DsbE; periplasmic protein thiol--disulfide oxidoreductase DsbE 1928546..1929073 Alkalilimnicola ehrlichii MLHE-1 4268783 YP_742525.1 CDS Mlg_1689 NC_008340.1 1929070 1929573 D PFAM: cytochrome C biogenesis protein; KEGG: xac:XAC1674 C-type cytochrome biogenesis protein; cytochrome C biogenesis protein 1929070..1929573 Alkalilimnicola ehrlichii MLHE-1 4268784 YP_742526.1 CDS Mlg_1690 NC_008340.1 1929570 1930457 D PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: eba:ebA3526 cyctochrome C biogenesis protein; TPR repeat-containing protein 1929570..1930457 Alkalilimnicola ehrlichii MLHE-1 4268785 YP_742527.1 CDS Mlg_1691 NC_008340.1 1930477 1931091 R PFAM: protein of unknown function DUF218; KEGG: ana:all1816 hypothetical protein; hypothetical protein complement(1930477..1931091) Alkalilimnicola ehrlichii MLHE-1 4268786 YP_742528.1 CDS Mlg_1692 NC_008340.1 1931271 1932713 R KEGG: tbd:Tbd_0101 peptidase S13, D-Ala-D-Ala carboxypeptidase C; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase complement(1931271..1932713) Alkalilimnicola ehrlichii MLHE-1 4268787 YP_742529.1 CDS Mlg_1693 NC_008340.1 1932826 1934877 D PFAM: UvrD/REP helicase; KEGG: ade:Adeh_0097 UvrD/REP helicase; UvrD/REP helicase 1932826..1934877 Alkalilimnicola ehrlichii MLHE-1 4268788 YP_742530.1 CDS Mlg_1694 NC_008340.1 1934891 1935973 R PFAM: protein of unknown function UPF0118; KEGG: pca:Pcar_3090 hypothetical protein; hypothetical protein complement(1934891..1935973) Alkalilimnicola ehrlichii MLHE-1 4268789 YP_742531.1 CDS Mlg_1695 NC_008340.1 1935951 1938026 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: son:SO4717 sensor histidine kinase; periplasmic sensor signal transduction histidine kinase complement(1935951..1938026) Alkalilimnicola ehrlichii MLHE-1 4268790 YP_742532.1 CDS Mlg_1696 NC_008340.1 1938044 1939489 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: son:SO4718 sigma-54 dependent response regulator; Fis family transcriptional regulator complement(1938044..1939489) Alkalilimnicola ehrlichii MLHE-1 4268791 YP_742533.1 CDS cysB NC_008340.1 1939651 1940631 D LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1939651..1940631 Alkalilimnicola ehrlichii MLHE-1 4268792 YP_742534.1 CDS Mlg_1698 NC_008340.1 1940699 1941448 R hypothetical protein complement(1940699..1941448) Alkalilimnicola ehrlichii MLHE-1 4269784 YP_742535.1 CDS Mlg_1699 NC_008340.1 1941673 1942947 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(1941673..1942947) Alkalilimnicola ehrlichii MLHE-1 4269785 YP_742536.1 CDS Mlg_1700 NC_008340.1 1943353 1945788 D TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: mca:MCA0592 nitrite reductase [NAD(P)H], large subunit; assimilatory nitrite reductase (NAD(P)H) large subunit 1943353..1945788 Alkalilimnicola ehrlichii MLHE-1 4269786 YP_742537.1 CDS Mlg_1701 NC_008340.1 1945840 1946238 D TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: mca:MCA0591 nitrite reductase [NAD(P)H], small subunit; assimilatory nitrite reductase (NAD(P)H) small subunit 1945840..1946238 Alkalilimnicola ehrlichii MLHE-1 4269787 YP_742538.1 CDS Mlg_1702 NC_008340.1 1946242 1948956 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rso:RSp1219 probable nitrate reductase large subunit oxidoreductase; assimilatory nitrate reductase (NADH) alpha subunit apoprotein 1946242..1948956 Alkalilimnicola ehrlichii MLHE-1 4269788 YP_742539.1 CDS Mlg_1703 NC_008340.1 1949259 1950662 D TIGRFAM: Twin-arginine translocation pathway signal; KEGG: mca:MCA0589 nitrate transporter; nitrate transporter 1949259..1950662 Alkalilimnicola ehrlichii MLHE-1 4269789 YP_742540.1 CDS Mlg_1704 NC_008340.1 1950673 1951608 D TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tbd:Tbd_2273 nitrate transport permease; nitrate ABC transporter, inner membrane subunit 1950673..1951608 Alkalilimnicola ehrlichii MLHE-1 4269790 YP_742541.1 CDS Mlg_1705 NC_008340.1 1951626 1952417 D KEGG: sme:SMa0581 nitrate transport ATP binding protein, probable; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase; nitrate ABC transporter ATPases C and D 1951626..1952417 Alkalilimnicola ehrlichii MLHE-1 4269791 YP_742542.1 CDS Mlg_1706 NC_008340.1 1952436 1953329 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: pst:PSPTO3344 siroheme synthase; uroporphyrinogen-III C-methyltransferase 1952436..1953329 Alkalilimnicola ehrlichii MLHE-1 4269792 YP_742543.1 CDS Mlg_1707 NC_008340.1 1953326 1954171 D PFAM: Uroporphyrinogen III synthase HEM4; KEGG: rpa:RPA4033 uroporphyrinogen III synthase HEM4; uroporphyrinogen III synthase HEM4 1953326..1954171 Alkalilimnicola ehrlichii MLHE-1 4269793 YP_742544.1 CDS Mlg_1708 NC_008340.1 1954210 1955505 R PFAM: ANTAR domain protein; Nitrate and nitrite sensing domain protein; KEGG: eca:ECA2995 nitrate-and nitrite-responsive positive regulator; response regulator receiver/ANTAR domain-containing protein complement(1954210..1955505) Alkalilimnicola ehrlichii MLHE-1 4269794 YP_742545.1 CDS Mlg_1709 NC_008340.1 1955832 1956506 R KEGG: noc:Noc_0497 membrane protein-like; hypothetical protein complement(1955832..1956506) Alkalilimnicola ehrlichii MLHE-1 4269795 YP_742546.1 CDS Mlg_1710 NC_008340.1 1956522 1957907 R PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: pae:PA2613 ATPase; recombination factor protein RarA complement(1956522..1957907) Alkalilimnicola ehrlichii MLHE-1 4269796 YP_742547.1 CDS Mlg_1711 NC_008340.1 1957904 1958548 R PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: eba:ebA7039 outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA complement(1957904..1958548) Alkalilimnicola ehrlichii MLHE-1 4269797 YP_742548.1 CDS Mlg_1712 NC_008340.1 1958584 1960953 R PFAM: cell divisionFtsK/SpoIIIE; KEGG: sde:Sde_1693 cell division protein FtsK; DNA translocase FtsK complement(1958584..1960953) Alkalilimnicola ehrlichii MLHE-1 4269798 YP_742549.1 CDS aat NC_008340.1 1961164 1961940 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1961164..1961940 Alkalilimnicola ehrlichii MLHE-1 4269799 YP_742550.1 CDS Mlg_1714 NC_008340.1 1961930 1962649 D Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 1961930..1962649 Alkalilimnicola ehrlichii MLHE-1 4269800 YP_742551.1 CDS Mlg_1715 NC_008340.1 1962618 1962881 R hypothetical protein complement(1962618..1962881) Alkalilimnicola ehrlichii MLHE-1 4268964 YP_742552.1 CDS Mlg_1716 NC_008340.1 1962901 1963992 R KEGG: gme:Gmet_0724 ribonuclease Z; beta-lactamase superfamily hydrolase complement(1962901..1963992) Alkalilimnicola ehrlichii MLHE-1 4268965 YP_742553.1 CDS Mlg_1717 NC_008340.1 1963997 1964413 R TIGRFAM: uncharacterized domain 1; PFAM: thioesterase superfamily protein; KEGG: cps:CPS_3094 thioesterase; hypothetical protein complement(1963997..1964413) Alkalilimnicola ehrlichii MLHE-1 4268966 YP_742554.1 CDS Mlg_1718 NC_008340.1 1964410 1965426 R CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A complement(1964410..1965426) Alkalilimnicola ehrlichii MLHE-1 4268967 YP_742555.1 CDS Mlg_1719 NC_008340.1 1965521 1967200 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: ilo:IL1542 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase complement(1965521..1967200) Alkalilimnicola ehrlichii MLHE-1 4268968 YP_742556.1 CDS Mlg_1720 NC_008340.1 1967321 1968619 D KEGG: csa:Csal_1112 hypothetical protein; hypothetical protein 1967321..1968619 Alkalilimnicola ehrlichii MLHE-1 4268969 YP_742557.1 CDS Mlg_1721 NC_008340.1 1968654 1969259 R PFAM: GCN5-related N-acetyltransferase; KEGG: gvi:glr2385 probable acetyltransferase; GCN5-like N-acetyltransferase complement(1968654..1969259) Alkalilimnicola ehrlichii MLHE-1 4268970 YP_742558.1 CDS Mlg_1722 NC_008340.1 1969307 1970608 D TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bce:BC2248 acetylornithine deacetylase; acetylornithine deacetylase 1969307..1970608 Alkalilimnicola ehrlichii MLHE-1 4268971 YP_742559.1 CDS Mlg_1723 NC_008340.1 1970630 1972663 D PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: noc:Noc_2221 peptidase S15; peptidase S15 1970630..1972663 Alkalilimnicola ehrlichii MLHE-1 4268972 YP_742560.1 CDS Mlg_1724 NC_008340.1 1972703 1973734 R KEGG: noc:Noc_2222 hypothetical protein; hypothetical protein complement(1972703..1973734) Alkalilimnicola ehrlichii MLHE-1 4268973 YP_742561.1 CDS Mlg_1725 NC_008340.1 1973826 1975019 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pfl:PFL_5773 conserved hypothetical protein TIGR00275; hypothetical protein complement(1973826..1975019) Alkalilimnicola ehrlichii MLHE-1 4268974 YP_742562.1 CDS Mlg_1726 NC_008340.1 1975090 1975902 R PFAM: glutamine amidotransferase, class-II; KEGG: pae:PA1307 hypothetical protein; glutamine amidotransferase, class-II complement(1975090..1975902) Alkalilimnicola ehrlichii MLHE-1 4268975 YP_742563.1 CDS Mlg_1727 NC_008340.1 1976020 1977741 D PFAM: peptidase M14, carboxypeptidase A; KEGG: syf:Synpcc7942_1581 peptidase M14, carboxypeptidase A; peptidase M14, carboxypeptidase A 1976020..1977741 Alkalilimnicola ehrlichii MLHE-1 4268976 YP_742564.1 CDS Mlg_1728 NC_008340.1 1977731 1979158 R PFAM: protein of unknown function UPF0027; KEGG: mca:MCA0195 hypothetical protein; hypothetical protein complement(1977731..1979158) Alkalilimnicola ehrlichii MLHE-1 4268977 YP_742565.1 CDS Mlg_1729 NC_008340.1 1979189 1979623 R PFAM: protein of unknown function DUF101; KEGG: tbd:Tbd_2360 tRNA nucleotidyltransferase/poly(A) polymerase; hypothetical protein complement(1979189..1979623) Alkalilimnicola ehrlichii MLHE-1 4268978 YP_742566.1 CDS Mlg_1730 NC_008340.1 1979821 1980417 D hypothetical protein 1979821..1980417 Alkalilimnicola ehrlichii MLHE-1 4268979 YP_742567.1 CDS Mlg_1731 NC_008340.1 1980477 1981454 D KEGG: tbd:Tbd_1465 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 1980477..1981454 Alkalilimnicola ehrlichii MLHE-1 4268980 YP_742568.1 CDS Mlg_1732 NC_008340.1 1981426 1982544 R KEGG: rfr:Rfer_0391 hypothetical protein; hypothetical protein complement(1981426..1982544) Alkalilimnicola ehrlichii MLHE-1 4268981 YP_742569.1 CDS Mlg_1733 NC_008340.1 1982619 1983284 D PFAM: phosphoribosyltransferase; KEGG: sme:SMc01463 hypothetical protein; phosphoribosyltransferase 1982619..1983284 Alkalilimnicola ehrlichii MLHE-1 4270840 YP_742570.1 CDS Mlg_1734 NC_008340.1 1983309 1984436 R KEGG: tbd:Tbd_1464 capsule biosynthesis protein; K07282 poly-gamma-glutamate synthesis protein (capsule biosynthesis protein); capsule biosynthesis protein complement(1983309..1984436) Alkalilimnicola ehrlichii MLHE-1 4270841 YP_742571.1 CDS Mlg_1735 NC_008340.1 1984489 1985379 R Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV complement(1984489..1985379) Alkalilimnicola ehrlichii MLHE-1 4270842 YP_742572.1 CDS Mlg_1736 NC_008340.1 1985475 1986428 R KEGG: bur:Bcep18194_C6952 hypothetical protein; hypothetical protein complement(1985475..1986428) Alkalilimnicola ehrlichii MLHE-1 4270843 YP_742573.1 CDS Mlg_1737 NC_008340.1 1986522 1987946 D PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: xac:XAC2952 succinyl-diaminopimelate desuccinylase; peptidase M20 1986522..1987946 Alkalilimnicola ehrlichii MLHE-1 4270844 YP_742574.1 CDS Mlg_1738 NC_008340.1 1988021 1988713 R PFAM: PhoU family protein; KEGG: syf:Synpcc7942_1912 photosystem I reaction center subunit XII; phosphate uptake regulator PhoU complement(1988021..1988713) Alkalilimnicola ehrlichii MLHE-1 4270845 YP_742575.1 CDS Mlg_1739 NC_008340.1 1988741 1989982 R PFAM: Na+/Pi-cotransporter; KEGG: rba:RB11050 NptA protein; Na+/Pi-cotransporter complement(1988741..1989982) Alkalilimnicola ehrlichii MLHE-1 4270846 YP_742576.1 CDS Mlg_1740 NC_008340.1 1990158 1990574 D PFAM: CBS domain containing protein; KEGG: bja:blr7332 inosine-5'-monophosphate dehydrogenase; signal transduction protein 1990158..1990574 Alkalilimnicola ehrlichii MLHE-1 4270847 YP_742577.1 CDS Mlg_1741 NC_008340.1 1990656 1991033 R hypothetical protein complement(1990656..1991033) Alkalilimnicola ehrlichii MLHE-1 4270848 YP_742578.1 CDS Mlg_1742 NC_008340.1 1991043 1995389 R KEGG: ana:alr3311 hypothetical protein; hypothetical protein complement(1991043..1995389) Alkalilimnicola ehrlichii MLHE-1 4270849 YP_742579.1 CDS Mlg_1743 NC_008340.1 1995414 1998317 R KEGG: gme:Gmet_1144 hypothetical protein; hypothetical protein complement(1995414..1998317) Alkalilimnicola ehrlichii MLHE-1 4270850 YP_742580.1 CDS Mlg_1744 NC_008340.1 1998353 2000044 R KEGG: gme:Gmet_1142 hypothetical protein; hypothetical protein complement(1998353..2000044) Alkalilimnicola ehrlichii MLHE-1 4270851 YP_742581.1 CDS Mlg_1745 NC_008340.1 2000041 2003001 R KEGG: gme:Gmet_1141 hypothetical protein; hypothetical protein complement(2000041..2003001) Alkalilimnicola ehrlichii MLHE-1 4270852 YP_742582.1 CDS Mlg_1746 NC_008340.1 2003003 2004184 R KEGG: gme:Gmet_1140 hypothetical protein; hypothetical protein complement(2003003..2004184) Alkalilimnicola ehrlichii MLHE-1 4270853 YP_742583.1 CDS Mlg_1747 NC_008340.1 2004184 2004570 R KEGG: gme:Gmet_1139 hypothetical protein; hypothetical protein complement(2004184..2004570) Alkalilimnicola ehrlichii MLHE-1 4270854 YP_742584.1 CDS Mlg_1748 NC_008340.1 2004578 2005405 R KEGG: gme:Gmet_1138 hypothetical protein; hypothetical protein complement(2004578..2005405) Alkalilimnicola ehrlichii MLHE-1 4270855 YP_742585.1 CDS Mlg_1749 NC_008340.1 2005454 2006608 R KEGG: gme:Gmet_1137 hypothetical protein; hypothetical protein complement(2005454..2006608) Alkalilimnicola ehrlichii MLHE-1 4270856 YP_742586.1 CDS Mlg_1750 NC_008340.1 2006612 2006911 R KEGG: gme:Gmet_1136 hypothetical protein; hypothetical protein complement(2006612..2006911) Alkalilimnicola ehrlichii MLHE-1 4268810 YP_742587.1 CDS Mlg_1751 NC_008340.1 2006911 2007558 R KEGG: gme:Gmet_1135 hypothetical protein; hypothetical protein complement(2006911..2007558) Alkalilimnicola ehrlichii MLHE-1 4268811 YP_742588.1 CDS Mlg_1752 NC_008340.1 2007561 2007791 R hypothetical protein complement(2007561..2007791) Alkalilimnicola ehrlichii MLHE-1 4268812 YP_742589.1 CDS Mlg_1753 NC_008340.1 2007784 2009136 R PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: gme:Gmet_1133 AAA ATPase, central region; ATPase central domain-containing protein complement(2007784..2009136) Alkalilimnicola ehrlichii MLHE-1 4268813 YP_742590.1 CDS Mlg_1754 NC_008340.1 2009133 2010146 R KEGG: gme:Gmet_1132 hypothetical protein; hypothetical protein complement(2009133..2010146) Alkalilimnicola ehrlichii MLHE-1 4268814 YP_742591.1 CDS Mlg_1755 NC_008340.1 2010149 2011201 R KEGG: ani:AN5649.2 hypothetical protein; hypothetical protein complement(2010149..2011201) Alkalilimnicola ehrlichii MLHE-1 4268815 YP_742592.1 CDS Mlg_1756 NC_008340.1 2011221 2012012 R KEGG: gme:Gmet_1130 hypothetical protein; hypothetical protein complement(2011221..2012012) Alkalilimnicola ehrlichii MLHE-1 4268816 YP_742593.1 CDS Mlg_1757 NC_008340.1 2012048 2012557 R TIGRFAM: conserved hypothetical phage tail protein; KEGG: gme:Gmet_1129 hypothetical protein; phage tail protein complement(2012048..2012557) Alkalilimnicola ehrlichii MLHE-1 4268817 YP_742594.1 CDS Mlg_1758 NC_008340.1 2012570 2014144 R PFAM: phage tail sheath protein; KEGG: gme:Gmet_1128 phage tail sheath protein; phage tail sheath protein complement(2012570..2014144) Alkalilimnicola ehrlichii MLHE-1 4268818 YP_742595.1 CDS Mlg_1759 NC_008340.1 2014669 2015565 R PFAM: UbiA prenyltransferase; KEGG: cps:CPS_4233 UbiA prenyltransferase; UbiA prenyltransferase complement(2014669..2015565) Alkalilimnicola ehrlichii MLHE-1 4268819 YP_742596.1 CDS Mlg_1760 NC_008340.1 2015634 2016389 D KEGG: ilo:IL2350 predicted permease; permease 2015634..2016389 Alkalilimnicola ehrlichii MLHE-1 4268820 YP_742597.1 CDS Mlg_1761 NC_008340.1 2016386 2017516 R PFAM: Patatin; KEGG: nmu:Nmul_A2472 patatin; patatin complement(2016386..2017516) Alkalilimnicola ehrlichii MLHE-1 4268821 YP_742598.1 CDS Mlg_1762 NC_008340.1 2017553 2018365 R KEGG: rsp:RSP_3760 hypothetical protein; hypothetical protein complement(2017553..2018365) Alkalilimnicola ehrlichii MLHE-1 4268822 YP_742599.1 CDS Mlg_1763 NC_008340.1 2018555 2020336 D KEGG: pfl:PFL_3832 hypothetical protein; hypothetical protein 2018555..2020336 Alkalilimnicola ehrlichii MLHE-1 4268823 YP_742600.1 CDS Mlg_1764 NC_008340.1 2020351 2020764 R PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: nmu:Nmul_A0938 GreA/GreB family elongation factor; GreA/GreB family elongation factor complement(2020351..2020764) Alkalilimnicola ehrlichii MLHE-1 4268824 YP_742601.1 CDS Mlg_1765 NC_008340.1 2020923 2021477 R KEGG: hch:HCH_04531 hypothetical protein; hypothetical protein complement(2020923..2021477) Alkalilimnicola ehrlichii MLHE-1 4268825 YP_742602.1 CDS Mlg_1766 NC_008340.1 2021579 2022223 R hypothetical protein complement(2021579..2022223) Alkalilimnicola ehrlichii MLHE-1 4268826 YP_742603.1 CDS Mlg_1767 NC_008340.1 2022462 2023337 D KEGG: par:Psyc_1159 hypothetical protein; hypothetical protein 2022462..2023337 Alkalilimnicola ehrlichii MLHE-1 4268827 YP_742604.1 CDS Mlg_1768 NC_008340.1 2023410 2024855 R PFAM: Gluconate transporter; Citrate transporter; KEGG: pcr:Pcryo_1595 GntP family transporter; citrate transporter complement(2023410..2024855) Alkalilimnicola ehrlichii MLHE-1 4269154 YP_742605.1 CDS Mlg_1769 NC_008340.1 2024860 2025942 R PFAM: Patatin; KEGG: mlo:mll3840 hypothetical protein; patatin complement(2024860..2025942) Alkalilimnicola ehrlichii MLHE-1 4269155 YP_742606.1 CDS Mlg_1770 NC_008340.1 2026202 2026411 D KEGG: ilo:IL2353 predicted membrane protein; membrane protein 2026202..2026411 Alkalilimnicola ehrlichii MLHE-1 4269156 YP_742607.1 CDS avtA NC_008340.1 2026435 2027709 R transaminase C; catalyzes transamination of alanine, valine, and 2-aminobutyrate with their respective 2-keto acids; also catalyzes terminal step in valine biosynthesis; valine--pyruvate transaminase complement(2026435..2027709) Alkalilimnicola ehrlichii MLHE-1 4269157 YP_742608.1 CDS Mlg_1772 NC_008340.1 2027904 2029661 D PFAM: CBS domain containing protein; Cl- channel, voltage-gated family protein; KEGG: rru:Rru_A1534 Cl-channel, voltage gated; Cl- channel, voltage-gated family protein 2027904..2029661 Alkalilimnicola ehrlichii MLHE-1 4269158 YP_742609.1 CDS Mlg_1773 NC_008340.1 2029648 2030781 D KEGG: rsp:RSP_0161 spermidine/putrescine-binding periplasmic protein; spermidine/putrescine-binding periplasmic protein 2029648..2030781 Alkalilimnicola ehrlichii MLHE-1 4269159 YP_742610.1 CDS Mlg_1774 NC_008340.1 2030939 2031988 D PFAM: fatty acid desaturase; KEGG: nha:Nham_2541 fatty acid desaturase; fatty acid desaturase 2030939..2031988 Alkalilimnicola ehrlichii MLHE-1 4269160 YP_742611.1 CDS Mlg_1775 NC_008340.1 2032076 2032669 R PFAM: GCN5-related N-acetyltransferase; KEGG: jan:Jann_3674 acetyltransferase, GNAT family; GCN5-like N-acetyltransferase complement(2032076..2032669) Alkalilimnicola ehrlichii MLHE-1 4269161 YP_742612.1 CDS Mlg_1776 NC_008340.1 2032852 2033193 D PFAM: regulatory protein, ArsR; KEGG: mfa:Mfla_2614 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 2032852..2033193 Alkalilimnicola ehrlichii MLHE-1 4269162 YP_742613.1 CDS Mlg_1777 NC_008340.1 2033207 2033554 D KEGG: mfa:Mfla_2613 hypothetical protein; hypothetical protein 2033207..2033554 Alkalilimnicola ehrlichii MLHE-1 4269163 YP_742614.1 CDS Mlg_1778 NC_008340.1 2033631 2034053 R PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: ava:Ava_B0058 glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating, GFA complement(2033631..2034053) Alkalilimnicola ehrlichii MLHE-1 4269164 YP_742615.1 CDS Mlg_1779 NC_008340.1 2034143 2034598 R KEGG: par:Psyc_1673 hypothetical protein; hypothetical protein complement(2034143..2034598) Alkalilimnicola ehrlichii MLHE-1 4269165 YP_742616.1 CDS Mlg_1780 NC_008340.1 2034810 2035499 R KEGG: tbd:Tbd_2631 methionine sulfoxide reductase B; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; methionine-R-sulfoxide reductase complement(2034810..2035499) Alkalilimnicola ehrlichii MLHE-1 4269166 YP_742617.1 CDS Mlg_1783 NC_008340.1 2036728 2038320 R PFAM: transposase IS66; KEGG: ppu:PP3985 ISPpu13, transposase Orf2; transposase IS66 complement(2036728..2038320) Alkalilimnicola ehrlichii MLHE-1 4269169 YP_742618.1 CDS Mlg_1784 NC_008340.1 2038365 2038721 R PFAM: IS66 Orf2 family protein; KEGG: rme:Rmet_1275 IS66 Orf2 like; IS66 Orf2 family protein complement(2038365..2038721) Alkalilimnicola ehrlichii MLHE-1 4269170 YP_742619.1 CDS Mlg_1785 NC_008340.1 2039018 2040430 D KEGG: rsp:RSP_2006 hypothetical protein; hypothetical protein 2039018..2040430 Alkalilimnicola ehrlichii MLHE-1 4268704 YP_742620.1 CDS Mlg_1786 NC_008340.1 2040448 2040711 R TIGRFAM: addiction module toxin, Txe/YoeB family; addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; Addiction module toxin, Txe/YoeB; KEGG: eba:ebD102 hypothetical protein; addiction module antitoxin complement(2040448..2040711) Alkalilimnicola ehrlichii MLHE-1 4268705 YP_742621.1 CDS Mlg_1787 NC_008340.1 2040708 2040950 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: eba:ebD103 antitoxin of toxin-antitoxin stability system; prevent-host-death family protein complement(2040708..2040950) Alkalilimnicola ehrlichii MLHE-1 4268706 YP_742622.1 CDS Mlg_1788 NC_008340.1 2041007 2041237 R hypothetical protein complement(2041007..2041237) Alkalilimnicola ehrlichii MLHE-1 4268707 YP_742623.1 CDS Mlg_1789 NC_008340.1 2041304 2044393 R PFAM: type III restriction enzyme, res subunit; protein of unknown function DUF450; SMART: DEAD/DEAH box helicase domain protein; KEGG: mfa:Mfla_2607 protein of unknown function DUF450; type III restriction enzyme, res subunit complement(2041304..2044393) Alkalilimnicola ehrlichii MLHE-1 4268708 YP_742624.1 CDS Mlg_1790 NC_008340.1 2044397 2045008 R hypothetical protein complement(2044397..2045008) Alkalilimnicola ehrlichii MLHE-1 4268709 YP_742625.1 CDS Mlg_1791 NC_008340.1 2045005 2046264 R PFAM: restriction modification system DNA specificity domain; KEGG: ilo:IL0643 restriction endonuclease S subunit; restriction modification system DNA specificity subunit complement(2045005..2046264) Alkalilimnicola ehrlichii MLHE-1 4268710 YP_742626.1 CDS Mlg_1792 NC_008340.1 2046261 2048438 R PFAM: N-6 DNA methylase; KEGG: mfa:Mfla_2604 N-6 DNA methylase; N-6 DNA methylase complement(2046261..2048438) Alkalilimnicola ehrlichii MLHE-1 4268711 YP_742627.1 CDS Mlg_1793 NC_008340.1 2048598 2049212 R PFAM: protein of unknown function DUF867; KEGG: sha:SH2068 hypothetical protein; hypothetical protein complement(2048598..2049212) Alkalilimnicola ehrlichii MLHE-1 4268712 YP_742628.1 CDS Mlg_1794 NC_008340.1 2049763 2050062 D hypothetical protein 2049763..2050062 Alkalilimnicola ehrlichii MLHE-1 4268713 YP_742629.1 CDS Mlg_1795 NC_008340.1 2050278 2051126 R KEGG: xcv:XCV0216 hypothetical protein; hypothetical protein complement(2050278..2051126) Alkalilimnicola ehrlichii MLHE-1 4268714 YP_742630.1 CDS Mlg_1796 NC_008340.1 2051261 2051893 R KEGG: pcr:Pcryo_2512 hypothetical protein; hypothetical protein complement(2051261..2051893) Alkalilimnicola ehrlichii MLHE-1 4268715 YP_742631.1 CDS Mlg_1797 NC_008340.1 2051890 2053017 R KEGG: sth:STH2171 hypothetical protein; hypothetical protein complement(2051890..2053017) Alkalilimnicola ehrlichii MLHE-1 4268716 YP_742632.1 CDS Mlg_1798 NC_008340.1 2053054 2054343 R PFAM: transposase; KEGG: eba:p2A174 transposase; transposase complement(2053054..2054343) Alkalilimnicola ehrlichii MLHE-1 4268717 YP_742633.1 CDS Mlg_1799 NC_008340.1 2054591 2055979 D TIGRFAM: integron integrase; PFAM: phage integrase; KEGG: gme:Gmet_3006 integron integrase; integron integrase 2054591..2055979 Alkalilimnicola ehrlichii MLHE-1 4268718 YP_742634.1 CDS Mlg_1800 NC_008340.1 2056294 2059794 D TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: noc:Noc_1642 transcription-repair coupling factor; transcription-repair coupling factor 2056294..2059794 Alkalilimnicola ehrlichii MLHE-1 4268719 YP_742635.1 CDS Mlg_1801 NC_008340.1 2059873 2060541 D KEGG: cbu:CBU_1073 hypothetical protein; hypothetical protein 2059873..2060541 Alkalilimnicola ehrlichii MLHE-1 4268720 YP_742636.1 CDS Mlg_1802 NC_008340.1 2060677 2062047 D PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: dvu:DVU2677 sensor histidine kinase/response regulator; GAF sensor signal transduction histidine kinase 2060677..2062047 Alkalilimnicola ehrlichii MLHE-1 4268721 YP_742637.1 CDS Mlg_1803 NC_008340.1 2062044 2062436 D PFAM: response regulator receiver; KEGG: bja:bll7479 two-component response regulator; response regulator receiver protein 2062044..2062436 Alkalilimnicola ehrlichii MLHE-1 4269465 YP_742638.1 CDS Mlg_1804 NC_008340.1 2062765 2064264 R TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: mca:MCA0301 lysyl-tRNA synthetase; lysyl-tRNA synthetase complement(2062765..2064264) Alkalilimnicola ehrlichii MLHE-1 4269466 YP_742639.1 CDS Mlg_1805 NC_008340.1 2064360 2065424 R TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: stm:STM3041c peptide chain release factor 2; peptide chain release factor 2 complement(2064360..2065424) Alkalilimnicola ehrlichii MLHE-1 4269467 YP_742640.1 CDS Mlg_1806 NC_008340.1 2065546 2066421 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: pae:PA3177 hypothetical protein; diguanylate cyclase complement(2065546..2066421) Alkalilimnicola ehrlichii MLHE-1 4269468 YP_742641.1 CDS Mlg_1807 NC_008340.1 2066700 2067905 D KEGG: psb:Psyr_3394 hypothetical protein; hypothetical protein 2066700..2067905 Alkalilimnicola ehrlichii MLHE-1 4269469 YP_742642.1 CDS Mlg_1808 NC_008340.1 2067910 2068269 D KEGG: hch:HCH_04371 uncharacterized flagellar protein FhlB cytoplasmic domain; flagellar protein FhlB-like protein 2067910..2068269 Alkalilimnicola ehrlichii MLHE-1 4269470 YP_742643.1 CDS Mlg_1809 NC_008340.1 2068288 2068704 R KEGG: noc:Noc_2154 hypothetical protein; hypothetical protein complement(2068288..2068704) Alkalilimnicola ehrlichii MLHE-1 4269471 YP_742644.1 CDS cysS NC_008340.1 2068708 2070165 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(2068708..2070165) Alkalilimnicola ehrlichii MLHE-1 4269472 YP_742645.1 CDS Mlg_1811 NC_008340.1 2070162 2071595 R TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase, class Ic; KEGG: noc:Noc_2250 glutamyl-tRNA synthetase; glutamate--tRNA(Gln) ligase/glutamyl-tRNA synthetase complement(2070162..2071595) Alkalilimnicola ehrlichii MLHE-1 4269473 YP_742646.1 CDS Mlg_1812 NC_008340.1 2071724 2072476 D TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; PFAM: metallophosphoesterase; KEGG: xac:XAC1036 UDP-2,3-diacylglucosamine hydrolase; UDP-2,3-diacylglucosamine hydrolase 2071724..2072476 Alkalilimnicola ehrlichii MLHE-1 4269474 YP_742647.1 CDS Mlg_1813 NC_008340.1 2072479 2073306 D TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: mag:amb3197 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase 2072479..2073306 Alkalilimnicola ehrlichii MLHE-1 4269475 YP_742648.1 CDS Mlg_1814 NC_008340.1 2073376 2073825 R PFAM: protein of unknown function DUF461; KEGG: dar:Daro_1578 protein of unknown function DUF461; hypothetical protein complement(2073376..2073825) Alkalilimnicola ehrlichii MLHE-1 4269476 YP_742649.1 CDS Mlg_1815 NC_008340.1 2073865 2074488 R PFAM: electron transport protein SCO1/SenC; KEGG: tcx:Tcr_1565 electron transport protein SCO1/SenC; electron transport protein SCO1/SenC complement(2073865..2074488) Alkalilimnicola ehrlichii MLHE-1 4269477 YP_742650.1 CDS Mlg_1816 NC_008340.1 2074492 2075010 R KEGG: dar:Daro_1576 hypothetical protein; hypothetical protein complement(2074492..2075010) Alkalilimnicola ehrlichii MLHE-1 4269478 YP_742651.1 CDS Mlg_1817 NC_008340.1 2075519 2075707 R hypothetical protein complement(2075519..2075707) Alkalilimnicola ehrlichii MLHE-1 4269479 YP_742652.1 CDS Mlg_1818 NC_008340.1 2076905 2077594 R PFAM: peptidase, membrane zinc metallopeptidase, KEGG: tcx:Tcr_1976 hypothetical protein; peptidase, membrane zinc metallopeptidase complement(2076905..2077594) Alkalilimnicola ehrlichii MLHE-1 4269480 YP_742653.1 CDS Mlg_1819 NC_008340.1 2077610 2079343 R TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: pae:PA3725 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ complement(2077610..2079343) Alkalilimnicola ehrlichii MLHE-1 4269481 YP_742654.1 CDS Mlg_1820 NC_008340.1 2079412 2080431 R KEGG: cvi:CV2476 probable signal peptide protein; signal peptide protein complement(2079412..2080431) Alkalilimnicola ehrlichii MLHE-1 4268175 YP_742655.1 CDS Mlg_1821 NC_008340.1 2080443 2081579 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(2080443..2081579) Alkalilimnicola ehrlichii MLHE-1 4268176 YP_742656.1 CDS Mlg_1822 NC_008340.1 2081602 2082915 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(2081602..2082915) Alkalilimnicola ehrlichii MLHE-1 4268177 YP_742657.1 CDS Mlg_1823 NC_008340.1 2082912 2084135 R PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: tcx:Tcr_1252 aminotransferase, class I and II; aminotransferase complement(2082912..2084135) Alkalilimnicola ehrlichii MLHE-1 4268178 YP_742658.1 CDS Mlg_1824 NC_008340.1 2084347 2084721 D PFAM: protein of unknown function DUF498; KEGG: cbu:CBU_0859 hypothetical protein; hypothetical protein 2084347..2084721 Alkalilimnicola ehrlichii MLHE-1 4268179 YP_742659.1 CDS Mlg_1825 NC_008340.1 2084825 2085853 R TIGRFAM: RNA polymerase sigma factor RpoS; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: pae:PA3622 sigma factor RpoS; RNA polymerase, sigma 28 subunit complement(2084825..2085853) Alkalilimnicola ehrlichii MLHE-1 4268180 YP_742660.1 CDS Mlg_1826 NC_008340.1 2086057 2086851 R PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: bte:BTH_I2225 lipoprotein NlpD; peptidase M23B complement(2086057..2086851) Alkalilimnicola ehrlichii MLHE-1 4268181 YP_742661.1 CDS Mlg_1827 NC_008340.1 2086848 2087429 R KEGG: ilo:IL0747 hypothetical protein; hypothetical protein complement(2086848..2087429) Alkalilimnicola ehrlichii MLHE-1 4268182 YP_742662.1 CDS Mlg_1828 NC_008340.1 2087429 2088094 R KEGG: ppu:PP1621 protein-L-isoaspartate O-methyltransferase; TIGRFAM: protein-L-isoaspartate O-methyltransferase; PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase complement(2087429..2088094) Alkalilimnicola ehrlichii MLHE-1 4268183 YP_742663.1 CDS surE NC_008340.1 2088096 2088869 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(2088096..2088869) Alkalilimnicola ehrlichii MLHE-1 4268184 YP_742664.1 CDS Mlg_1830 NC_008340.1 2088951 2089487 D PFAM: Smr protein/MutS2; KEGG: noc:Noc_1906 Smr protein/MutS2-like; Smr protein/MutS2 2088951..2089487 Alkalilimnicola ehrlichii MLHE-1 4268185 YP_742665.1 CDS Mlg_1831 NC_008340.1 2089431 2090381 R KEGG: noc:Noc_2021 PAS sensor diguanylate cyclase/phophodiesterase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(2089431..2090381) Alkalilimnicola ehrlichii MLHE-1 4268186 YP_742666.1 CDS Mlg_1832 NC_008340.1 2090437 2091063 R PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: hch:HCH_05220 response regulator; LuxR family transcriptional regulator complement(2090437..2091063) Alkalilimnicola ehrlichii MLHE-1 4268187 YP_742667.1 CDS Mlg_1833 NC_008340.1 2091232 2093295 R KEGG: mag:amb3291 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase complement(2091232..2093295) Alkalilimnicola ehrlichii MLHE-1 4268188 YP_742668.1 CDS Mlg_1834 NC_008340.1 2093292 2093978 R PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: sme:SMa1686 two-component response regulator; LuxR family transcriptional regulator complement(2093292..2093978) Alkalilimnicola ehrlichii MLHE-1 4268189 YP_742669.1 CDS truD NC_008340.1 2094075 2095106 R catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D complement(2094075..2095106) Alkalilimnicola ehrlichii MLHE-1 4268190 YP_742670.1 CDS Mlg_1836 NC_008340.1 2095096 2095590 R KEGG: mca:MCA2518 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(2095096..2095590) Alkalilimnicola ehrlichii MLHE-1 4268191 YP_742671.1 CDS Mlg_1837 NC_008340.1 2095640 2096347 R TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: noc:Noc_0854 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(2095640..2096347) Alkalilimnicola ehrlichii MLHE-1 4268192 YP_742672.1 CDS Mlg_1838 NC_008340.1 2096344 2096631 R PFAM: Septum formation initiator; KEGG: noc:Noc_0853 septum formation initiator; cell division protein FtsB complement(2096344..2096631) Alkalilimnicola ehrlichii MLHE-1 4269206 YP_742673.1 CDS eno NC_008340.1 2096659 2097948 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(2096659..2097948) Alkalilimnicola ehrlichii MLHE-1 4269207 YP_742674.1 CDS Mlg_1840 NC_008340.1 2098001 2098834 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(2098001..2098834) Alkalilimnicola ehrlichii MLHE-1 4269208 YP_742675.1 CDS pyrG NC_008340.1 2098888 2100510 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(2098888..2100510) Alkalilimnicola ehrlichii MLHE-1 4269209 YP_742676.1 CDS Mlg_1842 NC_008340.1 2100798 2102135 R TIGRFAM: tRNA(Ile)-lysidine synthetase; tRNA(Ile)-lysidine synthetase-like; PFAM: PP-loop domain protein; KEGG: noc:Noc_0849 tRNA(Ile)-lysidine synthase; tRNA(Ile)-lysidine synthetase complement(2100798..2102135) Alkalilimnicola ehrlichii MLHE-1 4269210 YP_742677.1 CDS Mlg_1843 NC_008340.1 2102163 2103119 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(2102163..2103119) Alkalilimnicola ehrlichii MLHE-1 4269211 YP_742678.1 CDS Mlg_1844 NC_008340.1 2103212 2103793 R PFAM: type IV pilus assembly PilZ; KEGG: sde:Sde_3217 modification methylase HemK; type IV pilus assembly PilZ complement(2103212..2103793) Alkalilimnicola ehrlichii MLHE-1 4269212 YP_742679.1 CDS Mlg_1845 NC_008340.1 2103874 2104680 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: syn:slr1753 hypothetical protein; TonB family protein complement(2103874..2104680) Alkalilimnicola ehrlichii MLHE-1 4269213 YP_742680.1 CDS Mlg_1846 NC_008340.1 2104677 2105081 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cyb:CYB_0820 proton transporter, ExbD/TolR family; biopolymer transport protein ExbD/TolR complement(2104677..2105081) Alkalilimnicola ehrlichii MLHE-1 4269214 YP_742681.1 CDS Mlg_1847 NC_008340.1 2105086 2105478 R PFAM: Biopolymer transport protein ExbD/TolR; KEGG: sde:Sde_2060 GTP cyclohydrolase I; biopolymer transport protein ExbD/TolR complement(2105086..2105478) Alkalilimnicola ehrlichii MLHE-1 4269215 YP_742682.1 CDS Mlg_1848 NC_008340.1 2105468 2106187 R PFAM: MotA/TolQ/ExbB proton channel; KEGG: jan:Jann_2130 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(2105468..2106187) Alkalilimnicola ehrlichii MLHE-1 4269216 YP_742683.1 CDS Mlg_1849 NC_008340.1 2106288 2109836 R KEGG: mca:MCA1286 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; DNA polymerase III subunit alpha complement(2106288..2109836) Alkalilimnicola ehrlichii MLHE-1 4269217 YP_742684.1 CDS Mlg_1850 NC_008340.1 2110027 2110623 R PFAM: ribonuclease HII/HIII; KEGG: sdy:SDY_0199 RNAse HII; RNase HII complement(2110027..2110623) Alkalilimnicola ehrlichii MLHE-1 4269218 YP_742685.1 CDS lpxB NC_008340.1 2110632 2111780 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(2110632..2111780) Alkalilimnicola ehrlichii MLHE-1 4269219 YP_742686.1 CDS Mlg_1852 NC_008340.1 2111795 2112571 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(2111795..2112571) Alkalilimnicola ehrlichii MLHE-1 4269220 YP_742687.1 CDS fabZ NC_008340.1 2112568 2113035 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(2112568..2113035) Alkalilimnicola ehrlichii MLHE-1 4269221 YP_742688.1 CDS Mlg_1854 NC_008340.1 2113133 2113663 R PFAM: outer membrane chaperone Skp (OmpH); KEGG: mca:MCA2446 outer membrane protein OmpH; outer membrane chaperone Skp complement(2113133..2113663) Alkalilimnicola ehrlichii MLHE-1 4269222 YP_742689.1 CDS Mlg_1855 NC_008340.1 2113688 2116087 R PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: noc:Noc_0816 outer membrane protein; surface antigen (D15) complement(2113688..2116087) Alkalilimnicola ehrlichii MLHE-1 4268073 YP_742690.1 CDS Mlg_1856 NC_008340.1 2116112 2117476 R TIGRFAM: membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; KEGG: noc:Noc_0815 peptidase M50, membrane-associated zinc metallopeptidase; peptidase RseP complement(2116112..2117476) Alkalilimnicola ehrlichii MLHE-1 4268074 YP_742691.1 CDS Mlg_1857 NC_008340.1 2117483 2118688 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(2117483..2118688) Alkalilimnicola ehrlichii MLHE-1 4268075 YP_742692.1 CDS Mlg_1858 NC_008340.1 2118667 2119497 R PFAM: phosphatidate cytidylyltransferase; KEGG: cbu:CBU_1381 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase complement(2118667..2119497) Alkalilimnicola ehrlichii MLHE-1 4268076 YP_742693.1 CDS Mlg_1859 NC_008340.1 2119490 2120263 R KEGG: mca:MCA0571 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl pyrophosphate synthetase complement(2119490..2120263) Alkalilimnicola ehrlichii MLHE-1 4268077 YP_742694.1 CDS frr NC_008340.1 2120403 2120960 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(2120403..2120960) Alkalilimnicola ehrlichii MLHE-1 4268078 YP_742695.1 CDS pyrH NC_008340.1 2120957 2121685 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(2120957..2121685) Alkalilimnicola ehrlichii MLHE-1 4268079 YP_742696.1 CDS tsf NC_008340.1 2121761 2122639 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(2121761..2122639) Alkalilimnicola ehrlichii MLHE-1 4268080 YP_742697.1 CDS rpsB NC_008340.1 2122725 2123471 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(2122725..2123471) Alkalilimnicola ehrlichii MLHE-1 4268081 YP_742698.1 CDS Mlg_1864 NC_008340.1 2123713 2124480 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: pae:PA3657 methionine aminopeptidase; methionine aminopeptidase, type I 2123713..2124480 Alkalilimnicola ehrlichii MLHE-1 4268082 YP_742699.1 CDS Mlg_1865 NC_008340.1 2124484 2127168 D KEGG: pae:PA3658 protein-PII uridylyltransferase; TIGRFAM: protein-P-II uridylyltransferase; PFAM: amino acid-binding ACT domain protein; DNA polymerase, beta domain protein region; metal-dependent phosphohydrolase, HD sub domain; GlnD PII-uridylyltransferase; SMART: metal-dependent phosphohydrolase, HD region; UTP-GlnB uridylyltransferase, GlnD 2124484..2127168 Alkalilimnicola ehrlichii MLHE-1 4268083 YP_742700.1 CDS Mlg_1866 NC_008340.1 2127165 2128355 D catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 2127165..2128355 Alkalilimnicola ehrlichii MLHE-1 4268084 YP_742701.1 CDS Mlg_1867 NC_008340.1 2128450 2129268 D KEGG: mca:MCA1490 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; PFAM: transferase hexapeptide repeat containing protein; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 2128450..2129268 Alkalilimnicola ehrlichii MLHE-1 4268085 YP_742702.1 CDS Mlg_1868 NC_008340.1 2129487 2130614 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 2129487..2130614 Alkalilimnicola ehrlichii MLHE-1 4268086 YP_742703.1 CDS Mlg_1869 NC_008340.1 2130671 2131273 R KEGG: sth:STH2141 alkaline phosphatase; alkaline phosphatase complement(2130671..2131273) Alkalilimnicola ehrlichii MLHE-1 4268087 YP_742704.1 CDS Mlg_1870 NC_008340.1 2131537 2133621 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2131537..2133621 Alkalilimnicola ehrlichii MLHE-1 4268088 YP_742705.1 CDS Mlg_1871 NC_008340.1 2133649 2135142 R PFAM: Ppx/GppA phosphatase; KEGG: noc:Noc_2394 exopolyphosphatase; Ppx/GppA phosphatase complement(2133649..2135142) Alkalilimnicola ehrlichii MLHE-1 4268089 YP_742706.1 CDS Mlg_1872 NC_008340.1 2135146 2135655 R TIGRFAM: phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase; KEGG: gvi:gll1752 hypothetical protein; phosphohistidine phosphatase, SixA complement(2135146..2135655) Alkalilimnicola ehrlichii MLHE-1 4268090 YP_742707.1 CDS Mlg_1873 NC_008340.1 2135676 2137205 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: xcv:XCV1477 signal transduction protein; diguanylate cyclase complement(2135676..2137205) Alkalilimnicola ehrlichii MLHE-1 4269728 YP_742708.1 CDS Mlg_1874 NC_008340.1 2137273 2137506 R TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: pae:PA1548 hypothetical protein; cytochrome oxidase maturation protein, cbb3-type complement(2137273..2137506) Alkalilimnicola ehrlichii MLHE-1 4269729 YP_742709.1 CDS Mlg_1875 NC_008340.1 2137510 2139990 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ppu:PP4261 cation-transporting P-type ATPase; heavy metal translocating P-type ATPase complement(2137510..2139990) Alkalilimnicola ehrlichii MLHE-1 4269730 YP_742710.1 CDS Mlg_1876 NC_008340.1 2139993 2140550 R KEGG: pae:PA1550 hypothetical protein; hypothetical protein complement(2139993..2140550) Alkalilimnicola ehrlichii MLHE-1 4269731 YP_742711.1 CDS Mlg_1877 NC_008340.1 2140571 2141953 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tbd:Tbd_0639 probable iron-sulfur 4Fe-4S ferredoxin transmembrane protein; 4Fe-4S ferredoxin complement(2140571..2141953) Alkalilimnicola ehrlichii MLHE-1 4269732 YP_742712.1 CDS Mlg_1878 NC_008340.1 2141964 2142281 R KEGG: eba:ebD128 hypothetical protein; hypothetical protein complement(2141964..2142281) Alkalilimnicola ehrlichii MLHE-1 4269733 YP_742713.1 CDS Mlg_1879 NC_008340.1 2142317 2143219 R TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III; PFAM: cytochrome c, class I; KEGG: eba:ebA5134 cytochrome-cbb3 oxidase, subunit III; cytochrome c oxidase, cbb3-type, subunit III complement(2142317..2143219) Alkalilimnicola ehrlichii MLHE-1 4269734 YP_742714.1 CDS Mlg_1880 NC_008340.1 2143212 2143403 R PFAM: Cbb3-type cytochrome oxidase component; KEGG: par:Psyc_0776 probable cytochrome c, oxidase component; Cbb3-type cytochrome oxidase component complement(2143212..2143403) Alkalilimnicola ehrlichii MLHE-1 4269735 YP_742715.1 CDS Mlg_1881 NC_008340.1 2143412 2144023 R TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: pae:PA1553 probable cytochrome c oxidase subunit; cytochrome c oxidase, cbb3-type, subunit II complement(2143412..2144023) Alkalilimnicola ehrlichii MLHE-1 4269736 YP_742716.1 CDS Mlg_1882 NC_008340.1 2144036 2145460 R CcoN; FixN; cbb3-type cytochrome c oxidase subunit I complement(2144036..2145460) Alkalilimnicola ehrlichii MLHE-1 4269737 YP_742717.1 CDS Mlg_1883 NC_008340.1 2145716 2146636 D PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: mca:MCA0468 MoxR protein; ATPase 2145716..2146636 Alkalilimnicola ehrlichii MLHE-1 4269738 YP_742718.1 CDS Mlg_1884 NC_008340.1 2146636 2147607 D PFAM: protein of unknown function DUF58; KEGG: dar:Daro_2518 protein of unknown function DUF58; hypothetical protein 2146636..2147607 Alkalilimnicola ehrlichii MLHE-1 4269739 YP_742719.1 CDS Mlg_1885 NC_008340.1 2147604 2149574 D PFAM: transglutaminase domain protein; KEGG: dar:Daro_2519 transglutaminase-like; transglutaminase domain-containing protein 2147604..2149574 Alkalilimnicola ehrlichii MLHE-1 4269740 YP_742720.1 CDS Mlg_1886 NC_008340.1 2149603 2150310 D PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: neu:NE0371 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 2149603..2150310 Alkalilimnicola ehrlichii MLHE-1 4269741 YP_742721.1 CDS Mlg_1887 NC_008340.1 2150382 2150858 R TIGRFAM: transcriptional regulator, Rrf2 family; iron-sulfur cluster assembly transcription factor IscR; PFAM: protein of unknown function UPF0074; KEGG: noc:Noc_1648 iron-sulphur cluster assembly transcription factor IscR; BadM/Rrf2 family transcriptional regulator complement(2150382..2150858) Alkalilimnicola ehrlichii MLHE-1 4269742 YP_742722.1 CDS Mlg_1888 NC_008340.1 2150972 2151430 R PFAM: protein of unknown function DUF1249; KEGG: mca:MCA2528 hypothetical protein; hypothetical protein complement(2150972..2151430) Alkalilimnicola ehrlichii MLHE-1 4269743 YP_742723.1 CDS Mlg_1889 NC_008340.1 2151500 2152324 R PFAM: protein of unknown function DUF299; KEGG: pae:PA1769 hypothetical protein; hypothetical protein complement(2151500..2152324) Alkalilimnicola ehrlichii MLHE-1 4269744 YP_742724.1 CDS Mlg_1890 NC_008340.1 2152373 2154820 D catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 2152373..2154820 Alkalilimnicola ehrlichii MLHE-1 4270090 YP_742725.1 CDS Mlg_1891 NC_008340.1 2154888 2155937 R PFAM: porin, Gram-negative type; KEGG: tbd:Tbd_0448 outer membrane protein (porin); porin complement(2154888..2155937) Alkalilimnicola ehrlichii MLHE-1 4270091 YP_742726.1 CDS Mlg_1892 NC_008340.1 2156003 2158195 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; PepSY-associated TM helix domain protein; flavodoxin/nitric oxide synthase; KEGG: bbr:BB3283 probable oxidoreductase; flavodoxin/nitric oxide synthase complement(2156003..2158195) Alkalilimnicola ehrlichii MLHE-1 4270092 YP_742727.1 CDS Mlg_1893 NC_008340.1 2158379 2158597 R hypothetical protein complement(2158379..2158597) Alkalilimnicola ehrlichii MLHE-1 4270093 YP_742728.1 CDS Mlg_1894 NC_008340.1 2159300 2160802 D PFAM: FAD linked oxidase domain protein; KEGG: psb:Psyr_3331 glycolate oxidase subunit GlcD; FAD linked oxidase domain-containing protein 2159300..2160802 Alkalilimnicola ehrlichii MLHE-1 4270094 YP_742729.1 CDS glcE NC_008340.1 2160815 2161879 D PFAM: FAD linked oxidase domain protein; KEGG: csa:Csal_2688 FAD linked oxidase-like protein; glycolate oxidase FAD binding subunit 2160815..2161879 Alkalilimnicola ehrlichii MLHE-1 4270095 YP_742730.1 CDS glcF NC_008340.1 2161887 2163101 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: noc:Noc_0841 hypothetical protein; glycolate oxidase iron-sulfur subunit 2161887..2163101 Alkalilimnicola ehrlichii MLHE-1 4270096 YP_742731.1 CDS Mlg_1897 NC_008340.1 2163203 2164024 D PFAM: Rhodanese domain protein; KEGG: noc:Noc_0191 thiosulfate sulfurtransferase; thiosulfate sulfurtransferase 2163203..2164024 Alkalilimnicola ehrlichii MLHE-1 4270097 YP_742732.1 CDS Mlg_1898 NC_008340.1 2164062 2164865 R PFAM: dihydrodipicolinate reductase; KEGG: pst:PSPTO4503 dihydrodipicolinate reductase; dihydrodipicolinate reductase complement(2164062..2164865) Alkalilimnicola ehrlichii MLHE-1 4270098 YP_742733.1 CDS Mlg_1899 NC_008340.1 2164868 2166019 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; molecular chaperone DnaJ complement(2164868..2166019) Alkalilimnicola ehrlichii MLHE-1 4270099 YP_742734.1 CDS dnaK NC_008340.1 2166125 2168140 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(2166125..2168140) Alkalilimnicola ehrlichii MLHE-1 4270100 YP_742735.1 CDS Mlg_1901 NC_008340.1 2168204 2168860 R PFAM: GrpE protein; KEGG: noc:Noc_2812 GrpE protein; heat shock protein GrpE complement(2168204..2168860) Alkalilimnicola ehrlichii MLHE-1 4270101 YP_742736.1 CDS Mlg_1902 NC_008340.1 2168988 2170040 R TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: noc:Noc_2813 negative regulator of class I heat shock protein; heat-inducible transcription repressor HrcA complement(2168988..2170040) Alkalilimnicola ehrlichii MLHE-1 4270102 YP_742737.1 CDS ppnK NC_008340.1 2170445 2171338 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2170445..2171338 Alkalilimnicola ehrlichii MLHE-1 4270103 YP_742738.1 CDS Mlg_1904 NC_008340.1 2171472 2173166 D TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: pst:PSPTO4507 DNA repair protein RecN; DNA repair protein RecN 2171472..2173166 Alkalilimnicola ehrlichii MLHE-1 4270104 YP_742739.1 CDS Mlg_1905 NC_008340.1 2173185 2173607 R PFAM: ferric-uptake regulator; KEGG: lpp:lpp0438 ferric uptake regulation protein; ferric uptake regulator family protein complement(2173185..2173607) Alkalilimnicola ehrlichii MLHE-1 4270105 YP_742740.1 CDS Mlg_1906 NC_008340.1 2173702 2174055 D PFAM: SmpA/OmlA domain protein; KEGG: mca:MCA2622 small protein A; SmpA/OmlA domain-containing protein 2173702..2174055 Alkalilimnicola ehrlichii MLHE-1 4270106 YP_742741.1 CDS Mlg_1907 NC_008340.1 2174063 2174356 R PFAM: protein of unknown function UPF0125; KEGG: noc:Noc_1196 hypothetical protein; hypothetical protein complement(2174063..2174356) Alkalilimnicola ehrlichii MLHE-1 4270107 YP_742742.1 CDS Mlg_1908 NC_008340.1 2174349 2174780 R PFAM: cyclase/dehydrase; KEGG: lpp:lpp0435 hypothetical protein; cyclase complement(2174349..2174780) Alkalilimnicola ehrlichii MLHE-1 4270108 YP_742743.1 CDS smpB NC_008340.1 2174894 2175376 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 2174894..2175376 Alkalilimnicola ehrlichii MLHE-1 4270109 YP_742744.1 CDS Mlg_1910 NC_008340.1 2176166 2176603 D hypothetical protein 2176166..2176603 Alkalilimnicola ehrlichii MLHE-1 4270111 YP_742745.1 CDS Mlg_1911 NC_008340.1 2176935 2177636 D hypothetical protein 2176935..2177636 Alkalilimnicola ehrlichii MLHE-1 4270112 YP_742746.1 CDS Mlg_1912 NC_008340.1 2177639 2178898 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rba:RB9942 conserved hypothetical protein- SAM-dependent methyltransferase; type 12 methyltransferase 2177639..2178898 Alkalilimnicola ehrlichii MLHE-1 4270113 YP_742747.1 CDS Mlg_1913 NC_008340.1 2178996 2180264 D PFAM: peptidase M42 family protein; KEGG: dge:Dgeo_1994 peptidase M42; peptidase M42 family protein 2178996..2180264 Alkalilimnicola ehrlichii MLHE-1 4270114 YP_742748.1 CDS Mlg_1914 NC_008340.1 2180388 2181353 R KEGG: ret:RHE_CH00964 hypothetical protein; hypothetical protein complement(2180388..2181353) Alkalilimnicola ehrlichii MLHE-1 4270115 YP_742749.1 CDS Mlg_1915 NC_008340.1 2181922 2183220 R KEGG: csa:Csal_1457 hypothetical protein; hypothetical protein complement(2181922..2183220) Alkalilimnicola ehrlichii MLHE-1 4270116 YP_742750.1 CDS Mlg_1916 NC_008340.1 2183499 2184452 R PFAM: protein of unknown function DUF6, transmembrane; KEGG: csa:Csal_0039 protein of unknown function DUF6, transmembrane; hypothetical protein complement(2183499..2184452) Alkalilimnicola ehrlichii MLHE-1 4270117 YP_742751.1 CDS Mlg_1917 NC_008340.1 2184651 2185211 R KEGG: xac:XAC4327 urea amidolyase; allophanate hydrolase complement(2184651..2185211) Alkalilimnicola ehrlichii MLHE-1 4270118 YP_742752.1 CDS Mlg_1918 NC_008340.1 2185383 2185922 R KEGG: nmu:Nmul_A0942 hypothetical protein; hypothetical protein complement(2185383..2185922) Alkalilimnicola ehrlichii MLHE-1 4270119 YP_742753.1 CDS Mlg_1921 NC_008340.1 2186743 2187315 D PFAM: regulatory protein, MarR; KEGG: nwi:Nwi_0565 transcriptional regulatory protein, MarR family; MarR family transcriptional regulator 2186743..2187315 Alkalilimnicola ehrlichii MLHE-1 4270122 YP_742754.1 CDS Mlg_1922 NC_008340.1 2187407 2187994 D hypothetical protein 2187407..2187994 Alkalilimnicola ehrlichii MLHE-1 4270123 YP_742755.1 CDS Mlg_1923 NC_008340.1 2188099 2189223 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_0163 ABC transporter related; ABC transporter-like protein complement(2188099..2189223) Alkalilimnicola ehrlichii MLHE-1 4270124 YP_742756.1 CDS Mlg_1924 NC_008340.1 2189216 2189884 R TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mfa:Mfla_1392 molybdate ABC transporter, permease; molybdate ABC transporter, inner membrane subunit complement(2189216..2189884) Alkalilimnicola ehrlichii MLHE-1 4270125 YP_742757.1 CDS Mlg_1925 NC_008340.1 2189928 2190764 R TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein, family 1; KEGG: mfa:Mfla_1391 molybdenum ABC transporter, periplasmic molybdate-binding protein; molybdenum ABC transporter, periplasmic molybdate-binding protein complement(2189928..2190764) Alkalilimnicola ehrlichii MLHE-1 4270126 YP_742758.1 CDS Mlg_1926 NC_008340.1 2190836 2191621 R KEGG: mag:amb0850 xanthine and CO dehydrogenase maturation factor; xanthine and Co dehydrogenase maturation factor complement(2190836..2191621) Alkalilimnicola ehrlichii MLHE-1 4270127 YP_742759.1 CDS Mlg_1927 NC_008340.1 2191760 2192149 R PFAM: regulatory protein, LysR; KEGG: pol:Bpro_2496 transcriptional regulator, ModE family; ModE family transcriptional regulator complement(2191760..2192149) Alkalilimnicola ehrlichii MLHE-1 4270128 YP_742760.1 CDS Mlg_1928 NC_008340.1 2192265 2192546 R hypothetical protein complement(2192265..2192546) Alkalilimnicola ehrlichii MLHE-1 4270129 YP_742761.1 CDS Mlg_1929 NC_008340.1 2192740 2194146 D KEGG: dar:Daro_1938 deoxyguanosinetriphosphate triphosphohydrolase; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; deoxyguanosinetriphosphate triphosphohydrolase 2192740..2194146 Alkalilimnicola ehrlichii MLHE-1 4270130 YP_742762.1 CDS Mlg_1930 NC_008340.1 2194156 2196363 R KEGG: ppu:PP3319 sensory box protein/GGDEF domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(2194156..2196363) Alkalilimnicola ehrlichii MLHE-1 4270131 YP_742763.1 CDS Mlg_1931 NC_008340.1 2196588 2197652 D KEGG: dar:Daro_0927 hypothetical protein; hypothetical protein 2196588..2197652 Alkalilimnicola ehrlichii MLHE-1 4270132 YP_742764.1 CDS Mlg_1932 NC_008340.1 2197673 2198053 R KEGG: tel:tll1086 hypothetical protein; hypothetical protein complement(2197673..2198053) Alkalilimnicola ehrlichii MLHE-1 4270133 YP_742765.1 CDS Mlg_1933 NC_008340.1 2198190 2198564 R KEGG: pae:PA3880 hypothetical protein; hypothetical protein complement(2198190..2198564) Alkalilimnicola ehrlichii MLHE-1 4270134 YP_742766.1 CDS Mlg_1934 NC_008340.1 2198702 2199868 D PFAM: NnrS family protein; KEGG: neu:NE1696 hypothetical protein; NnrS family protein 2198702..2199868 Alkalilimnicola ehrlichii MLHE-1 4270135 YP_742767.1 CDS Mlg_1935 NC_008340.1 2199865 2200470 D PFAM: Glutathione S-transferase, N-terminal domain; KEGG: cps:CPS_1910 glutathione S-transferase; glutathione S-transferase-like protein 2199865..2200470 Alkalilimnicola ehrlichii MLHE-1 4270136 YP_742768.1 CDS Mlg_1936 NC_008340.1 2200771 2202252 R TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: csa:Csal_1795 anion transporter; anion transporter complement(2200771..2202252) Alkalilimnicola ehrlichii MLHE-1 4270137 YP_742769.1 CDS Mlg_1937 NC_008340.1 2202254 2203879 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: dar:Daro_0926 histidine kinase, HAMP region:bacterial chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2202254..2203879) Alkalilimnicola ehrlichii MLHE-1 4270138 YP_742770.1 CDS Mlg_1938 NC_008340.1 2203984 2205354 R KEGG: cps:CPS_4073 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; SMART: AAA ATPase; signal recognition particle subunit FFH/SRP54 (srp54) complement(2203984..2205354) Alkalilimnicola ehrlichii MLHE-1 4270139 YP_742771.1 CDS Mlg_1939 NC_008340.1 2205484 2206326 D PFAM: cytochrome c assembly protein; KEGG: pst:PSPTO1471 hypothetical protein; cytochrome c assembly protein 2205484..2206326 Alkalilimnicola ehrlichii MLHE-1 4270140 YP_742772.1 CDS Mlg_1940 NC_008340.1 2206379 2207032 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: noc:Noc_0989 hypothetical protein; redoxin domain-containing protein complement(2206379..2207032) Alkalilimnicola ehrlichii MLHE-1 4270141 YP_742773.1 CDS Mlg_1941 NC_008340.1 2207137 2208204 R PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: csa:Csal_3140 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter subunit DctP complement(2207137..2208204) Alkalilimnicola ehrlichii MLHE-1 4268109 YP_742774.1 CDS Mlg_1942 NC_008340.1 2208455 2209282 D PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: csa:Csal_3138 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 2208455..2209282 Alkalilimnicola ehrlichii MLHE-1 4268110 YP_742775.1 CDS Mlg_1943 NC_008340.1 2209349 2210632 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: csa:Csal_3139 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM 2209349..2210632 Alkalilimnicola ehrlichii MLHE-1 4268111 YP_742776.1 CDS Mlg_1944 NC_008340.1 2210799 2212961 R KEGG: mca:MCA1309 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; polynucleotide phosphorylase complement(2210799..2212961) Alkalilimnicola ehrlichii MLHE-1 4268112 YP_742777.1 CDS rpsO NC_008340.1 2212995 2213264 R primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 complement(2212995..2213264) Alkalilimnicola ehrlichii MLHE-1 4268113 YP_742778.1 CDS truB NC_008340.1 2213362 2214288 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(2213362..2214288) Alkalilimnicola ehrlichii MLHE-1 4268114 YP_742779.1 CDS rbfA NC_008340.1 2214300 2214692 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(2214300..2214692) Alkalilimnicola ehrlichii MLHE-1 4268115 YP_742780.1 CDS infB NC_008340.1 2214700 2217351 R Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 complement(2214700..2217351) Alkalilimnicola ehrlichii MLHE-1 4268116 YP_742781.1 CDS nusA NC_008340.1 2217425 2218921 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(2217425..2218921) Alkalilimnicola ehrlichii MLHE-1 4268117 YP_742782.1 CDS Mlg_1950 NC_008340.1 2218947 2219477 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(2218947..2219477) Alkalilimnicola ehrlichii MLHE-1 4268118 YP_742783.1 CDS Mlg_1951 NC_008340.1 2219764 2220234 D hypothetical protein 2219764..2220234 Alkalilimnicola ehrlichii MLHE-1 4268120 YP_742784.1 CDS rlmL NC_008340.1 2220354 2222492 R catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase complement(2220354..2222492) Alkalilimnicola ehrlichii MLHE-1 4268121 YP_742785.1 CDS Mlg_1953 NC_008340.1 2222500 2223054 R KEGG: hch:HCH_01554 hypothetical protein; hypothetical protein complement(2222500..2223054) Alkalilimnicola ehrlichii MLHE-1 4268122 YP_742786.1 CDS Mlg_1954 NC_008340.1 2223384 2224601 D KEGG: sdn:Sden_3099 hypothetical protein; hypothetical protein 2223384..2224601 Alkalilimnicola ehrlichii MLHE-1 4268123 YP_742787.1 CDS Mlg_1955 NC_008340.1 2224660 2225400 R PFAM: pseudouridine synthase; KEGG: dar:Daro_2869 pseudouridine synthase; tRNA pseudouridine synthase C complement(2224660..2225400) Alkalilimnicola ehrlichii MLHE-1 4268124 YP_742788.1 CDS Mlg_1956 NC_008340.1 2225446 2225805 R KEGG: tcx:Tcr_0831 hypothetical protein; hypothetical protein complement(2225446..2225805) Alkalilimnicola ehrlichii MLHE-1 4268158 YP_742789.1 CDS Mlg_1957 NC_008340.1 2225798 2227264 R KEGG: noc:Noc_2552 proton-translocating NADH-quinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit N complement(2225798..2227264) Alkalilimnicola ehrlichii MLHE-1 4268159 YP_742790.1 CDS Mlg_1958 NC_008340.1 2227347 2228852 R KEGG: noc:Noc_2553 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M complement(2227347..2228852) Alkalilimnicola ehrlichii MLHE-1 4268160 YP_742791.1 CDS Mlg_1959 NC_008340.1 2228915 2230876 R KEGG: noc:Noc_2554 NADH-plastoquinone oxidoreductase, chain 5; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L complement(2228915..2230876) Alkalilimnicola ehrlichii MLHE-1 4268161 YP_742792.1 CDS Mlg_1960 NC_008340.1 2230882 2231187 R PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: noc:Noc_2555 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase, chain 4L complement(2230882..2231187) Alkalilimnicola ehrlichii MLHE-1 4268162 YP_742793.1 CDS Mlg_1961 NC_008340.1 2231231 2231827 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: noc:Noc_2556 NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 complement(2231231..2231827) Alkalilimnicola ehrlichii MLHE-1 4268163 YP_742794.1 CDS Mlg_1962 NC_008340.1 2231922 2232413 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(2231922..2232413) Alkalilimnicola ehrlichii MLHE-1 4268164 YP_742795.1 CDS Mlg_1963 NC_008340.1 2232425 2233444 R PFAM: respiratory-chain NADH dehydrogenase, subunit 1; KEGG: cbu:CBU_1441 NADH dehydrogenase I, H subunit; respiratory-chain NADH dehydrogenase, subunit 1 complement(2232425..2233444) Alkalilimnicola ehrlichii MLHE-1 4268165 YP_742796.1 CDS Mlg_1964 NC_008340.1 2233476 2235869 R Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit G complement(2233476..2235869) Alkalilimnicola ehrlichii MLHE-1 4268166 YP_742797.1 CDS Mlg_1965 NC_008340.1 2235872 2237149 R KEGG: lpp:lpp2831 NADH dehydrogenase I chain F; TIGRFAM: NADH-quinone oxidoreductase, F subunit; PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; NADH-quinone oxidoreductase, F subunit complement(2235872..2237149) Alkalilimnicola ehrlichii MLHE-1 4268167 YP_742798.1 CDS Mlg_1966 NC_008340.1 2237153 2237653 R KEGG: noc:Noc_2561 NADH dehydrogenase (ubiquinone), 24 kDa subunit; TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH-quinone oxidoreductase, E subunit complement(2237153..2237653) Alkalilimnicola ehrlichii MLHE-1 4268168 YP_742799.1 CDS Mlg_1967 NC_008340.1 2237650 2238903 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(2237650..2238903) Alkalilimnicola ehrlichii MLHE-1 4268169 YP_742800.1 CDS Mlg_1968 NC_008340.1 2238896 2239639 R KEGG: xac:XAC2702 NADH dehydrogenase I chain C; TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; NADH (or F420H2) dehydrogenase, subunit C complement(2238896..2239639) Alkalilimnicola ehrlichii MLHE-1 4268170 YP_742801.1 CDS Mlg_1969 NC_008340.1 2239650 2240126 R KEGG: neu:NE1776 respiratory-chain NADH dehydrogenase 20 Kd subunit; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH-quinone oxidoreductase subunit B complement(2239650..2240126) Alkalilimnicola ehrlichii MLHE-1 4268171 YP_742802.1 CDS Mlg_1970 NC_008340.1 2240117 2240473 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; KEGG: tcx:Tcr_0817 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 complement(2240117..2240473) Alkalilimnicola ehrlichii MLHE-1 4268172 YP_742803.1 CDS secG NC_008340.1 2240805 2241161 R TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: ilo:IL0971 biopolymer transport protein; preprotein translocase subunit SecG complement(2240805..2241161) Alkalilimnicola ehrlichii MLHE-1 4268174 YP_742804.1 CDS Mlg_1972 NC_008340.1 2241207 2241959 R PFAM: triosephosphate isomerase; KEGG: dar:Daro_0947 triosephosphate isomerase; triosephosphate isomerase complement(2241207..2241959) Alkalilimnicola ehrlichii MLHE-1 4268515 YP_742805.1 CDS glmM NC_008340.1 2242025 2243380 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(2242025..2243380) Alkalilimnicola ehrlichii MLHE-1 4268516 YP_742806.1 CDS Mlg_1974 NC_008340.1 2243382 2244278 R KEGG: bpm:BURPS1710b_1616 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase complement(2243382..2244278) Alkalilimnicola ehrlichii MLHE-1 4268517 YP_742807.1 CDS Mlg_1975 NC_008340.1 2244278 2246197 R KEGG: mca:MCA1848 cell division protein FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; FtsH peptidase complement(2244278..2246197) Alkalilimnicola ehrlichii MLHE-1 4268518 YP_742808.1 CDS Mlg_1976 NC_008340.1 2246290 2246919 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; KEGG: pae:PA4752 cell division protein ftsj homolog (ribosomal RNA large subunit methyltransferase J); ribosomal RNA methyltransferase RrmJ/FtsJ complement(2246290..2246919) Alkalilimnicola ehrlichii MLHE-1 4268519 YP_742809.1 CDS Mlg_1977 NC_008340.1 2246906 2247175 R hypothetical protein complement(2246906..2247175) Alkalilimnicola ehrlichii MLHE-1 4268520 YP_742810.1 CDS Mlg_1978 NC_008340.1 2247193 2247495 D PFAM: protein of unknown function UPF0044; KEGG: vch:VC0635 RNA-binding protein containing KH domain; hypothetical protein 2247193..2247495 Alkalilimnicola ehrlichii MLHE-1 4268521 YP_742811.1 CDS Mlg_1979 NC_008340.1 2247482 2247934 R KEGG: eba:ebA4818 hypothetical protein; hypothetical protein complement(2247482..2247934) Alkalilimnicola ehrlichii MLHE-1 4268522 YP_742812.1 CDS greA NC_008340.1 2247996 2248472 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(2247996..2248472) Alkalilimnicola ehrlichii MLHE-1 4268523 YP_742813.1 CDS Mlg_1981 NC_008340.1 2248469 2251705 R TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: noc:Noc_2572 carbamoyl-phosphate synthase, large subunit, glutamine-dependent; carbamoyl-phosphate synthase large subunit complement(2248469..2251705) Alkalilimnicola ehrlichii MLHE-1 4268524 YP_742814.1 CDS Mlg_1982 NC_008340.1 2251743 2252903 R TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: vch:VC2390 carbamoyl-phosphate synthase, small subunit; carbamoyl-phosphate synthase small subunit complement(2251743..2252903) Alkalilimnicola ehrlichii MLHE-1 4268525 YP_742815.1 CDS Mlg_1983 NC_008340.1 2253110 2254036 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pae:PA2812 ABC-2 type transport system ATP-binding protein; ABC transporter-like protein 2253110..2254036 Alkalilimnicola ehrlichii MLHE-1 4268526 YP_742816.1 CDS Mlg_1984 NC_008340.1 2254029 2254811 D PFAM: ABC-2 type transporter; KEGG: hch:HCH_04490 ABC-type multidrug transport system, permease component; ABC-2 type transporter 2254029..2254811 Alkalilimnicola ehrlichii MLHE-1 4268527 YP_742817.1 CDS Mlg_1985 NC_008340.1 2254819 2256162 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 2254819..2256162 Alkalilimnicola ehrlichii MLHE-1 4268528 YP_742818.1 CDS Mlg_1986 NC_008340.1 2256241 2256558 R PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: sil:SPO0367 DNA-binding protein, H-NS family; histone family protein nucleoid-structuring protein H-NS complement(2256241..2256558) Alkalilimnicola ehrlichii MLHE-1 4268529 YP_742819.1 CDS Mlg_1987 NC_008340.1 2256863 2258086 D KEGG: xoo:XOO4083 hypothetical protein; hypothetical protein 2256863..2258086 Alkalilimnicola ehrlichii MLHE-1 4268530 YP_742820.1 CDS Mlg_1988 NC_008340.1 2258121 2258711 R PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: ade:Adeh_1455 pyridoxamine 5'-phosphate oxidase; pyridoxamine 5'-phosphate oxidase complement(2258121..2258711) Alkalilimnicola ehrlichii MLHE-1 4268531 YP_742821.1 CDS Mlg_1989 NC_008340.1 2258791 2260212 R PFAM: protein of unknown function DUF107; KEGG: nmu:Nmul_A1039 protein of unknown function DUF107; nodulation efficiency protein NfeD complement(2258791..2260212) Alkalilimnicola ehrlichii MLHE-1 4270463 YP_742822.1 CDS Mlg_1990 NC_008340.1 2260316 2261020 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pae:PA5281 probable hydrolase; HAD family hydrolase complement(2260316..2261020) Alkalilimnicola ehrlichii MLHE-1 4270464 YP_742823.1 CDS Mlg_1991 NC_008340.1 2261013 2261744 R KEGG: hch:HCH_02528 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(2261013..2261744) Alkalilimnicola ehrlichii MLHE-1 4270465 YP_742824.1 CDS rnhA NC_008340.1 2261741 2262181 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(2261741..2262181) Alkalilimnicola ehrlichii MLHE-1 4270466 YP_742825.1 CDS Mlg_1993 NC_008340.1 2262183 2262998 R PFAM: Methyltransferase type 11; KEGG: pfl:PFL_3298 hypothetical protein; type 11 methyltransferase complement(2262183..2262998) Alkalilimnicola ehrlichii MLHE-1 4270467 YP_742826.1 CDS Mlg_1994 NC_008340.1 2263131 2263901 D PFAM: beta-lactamase domain protein; KEGG: neu:NE0138 metallo-beta-lactamase superfamily; hydroxyacylglutathione hydrolase 2263131..2263901 Alkalilimnicola ehrlichii MLHE-1 4270468 YP_742827.1 CDS Mlg_1995 NC_008340.1 2263965 2265584 D PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; MLTD_N domain protein; KEGG: ilo:IL1698 soluble lytic murein transglycosylase; lytic transglycosylase catalytic subunit 2263965..2265584 Alkalilimnicola ehrlichii MLHE-1 4270469 YP_742828.1 CDS Mlg_1996 NC_008340.1 2265606 2265890 R TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; KEGG: pha:PSHAb0505 cell division topological specificity factor; cell division topological specificity factor MinE complement(2265606..2265890) Alkalilimnicola ehrlichii MLHE-1 4270470 YP_742829.1 CDS Mlg_1997 NC_008340.1 2265893 2266702 R TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pfo:Pfl_1694 septum site-determining protein MinD; septum site-determining protein MinD complement(2265893..2266702) Alkalilimnicola ehrlichii MLHE-1 4270471 YP_742830.1 CDS Mlg_1998 NC_008340.1 2266735 2267460 R TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; Septum formation inhibitor MinC domain protein; KEGG: ppu:PP1734 septum site-determining protein MinC; septum site-determining protein MinC complement(2266735..2267460) Alkalilimnicola ehrlichii MLHE-1 4270472 YP_742831.1 CDS Mlg_1999 NC_008340.1 2267939 2268682 R PFAM: peptidase S24, S26A and S26B; KEGG: son:SO0641 prophage MuSo1, transcriptional regulator, Cro/CI family; phage repressor complement(2267939..2268682) Alkalilimnicola ehrlichii MLHE-1 4270473 YP_742832.1 CDS Mlg_2000 NC_008340.1 2269014 2269196 D hypothetical protein 2269014..2269196 Alkalilimnicola ehrlichii MLHE-1 4270474 YP_742833.1 CDS Mlg_2001 NC_008340.1 2269237 2269818 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mac:MA1362 O-linked GlcNAc transferase; TPR repeat-containing protein complement(2269237..2269818) Alkalilimnicola ehrlichii MLHE-1 4270475 YP_742834.1 CDS Mlg_2002 NC_008340.1 2269811 2270056 R hypothetical protein complement(2269811..2270056) Alkalilimnicola ehrlichii MLHE-1 4270476 YP_742835.1 CDS Mlg_2003 NC_008340.1 2270113 2272287 R PFAM: Na+/solute symporter; KEGG: csa:Csal_2927 Na+/solute symporter; Na+/solute symporter complement(2270113..2272287) Alkalilimnicola ehrlichii MLHE-1 4270477 YP_742836.1 CDS Mlg_2004 NC_008340.1 2272692 2274560 D PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase KEGG: mag:amb1544 predicted signal-transduction protein containing cAMP-binding and CBS domains; cyclic nucleotide-binding protein 2272692..2274560 Alkalilimnicola ehrlichii MLHE-1 4270478 YP_742837.1 CDS Mlg_2005 NC_008340.1 2274575 2275702 D PFAM: protein of unknown function DUF294, nucleotidyltransferase KEGG: rsp:RSP_0575 predicted signal transduction protein containing cyclic nucleotide-binding and CBS domains; hypothetical protein 2274575..2275702 Alkalilimnicola ehrlichii MLHE-1 4270479 YP_742838.1 CDS Mlg_2006 NC_008340.1 2275718 2277907 D KEGG: pol:Bpro_4151 DNA polymerase III, epsilon subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: histidine kinase A domain protein domain protein; Exonuclease, RNase T and DNA polymerase III; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; Exonuclease; PAS/PAC sensor protein 2275718..2277907 Alkalilimnicola ehrlichii MLHE-1 4270480 YP_742839.1 CDS Mlg_2007 NC_008340.1 2277974 2279932 R molecular chaperone; heat shock protein 90 complement(2277974..2279932) Alkalilimnicola ehrlichii MLHE-1 4269607 YP_742840.1 CDS Mlg_2008 NC_008340.1 2280033 2280452 R PFAM: CopG domain protein DNA-binding domain protein; KEGG: dar:Daro_3947 nickel responsive regulator; CopG family transcriptional regulator complement(2280033..2280452) Alkalilimnicola ehrlichii MLHE-1 4269608 YP_742841.1 CDS Mlg_2009 NC_008340.1 2280445 2281857 R KEGG: dar:Daro_3946 PAS; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor signal transduction histidine kinase complement(2280445..2281857) Alkalilimnicola ehrlichii MLHE-1 4269609 YP_742842.1 CDS Mlg_2010 NC_008340.1 2281880 2283328 R PFAM: nickel-dependent hydrogenase, large subunit; KEGG: mag:amb1942 uptake hydrogenase; nickel-dependent hydrogenase, large subunit complement(2281880..2283328) Alkalilimnicola ehrlichii MLHE-1 4269610 YP_742843.1 CDS Mlg_2011 NC_008340.1 2283325 2284344 R PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: rfr:Rfer_4120 uptake hydrogenase accessory protein HupU; NADH ubiquinone oxidoreductase, 20 kDa subunit complement(2283325..2284344) Alkalilimnicola ehrlichii MLHE-1 4269611 YP_742844.1 CDS Mlg_2012 NC_008340.1 2284341 2285795 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: dar:Daro_3962 helix-turn-helix, fis-type; Fis family transcriptional regulator complement(2284341..2285795) Alkalilimnicola ehrlichii MLHE-1 4269612 YP_742845.1 CDS Mlg_2013 NC_008340.1 2285792 2287519 R PFAM: Enoyl-CoA hydratase/isomerase; formyl transferase domain protein; KEGG: dar:Daro_3963 enoyl-CoA hydratase/isomerase:formyl transferase, N-terminal:formyl transferase, C-terminal; formyl transferase domain-containing protein complement(2285792..2287519) Alkalilimnicola ehrlichii MLHE-1 4269613 YP_742846.1 CDS Mlg_2014 NC_008340.1 2287541 2288593 R TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: rme:Rmet_1540 hydrogenase expression/formation protein HypE; hydrogenase expression/formation protein HypE complement(2287541..2288593) Alkalilimnicola ehrlichii MLHE-1 4269614 YP_742847.1 CDS Mlg_2015 NC_008340.1 2288590 2289726 R TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: rme:Rmet_1539 hydrogenase expression/formation protein HypD; hydrogenase expression/formation protein HypD complement(2288590..2289726) Alkalilimnicola ehrlichii MLHE-1 4269615 YP_742848.1 CDS Mlg_2016 NC_008340.1 2289723 2289950 R TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dar:Daro_3967 hydrogenase expression/formation protein (HUPF/HYPC); hydrogenase assembly chaperone hypC/hupF complement(2289723..2289950) Alkalilimnicola ehrlichii MLHE-1 4269616 YP_742849.1 CDS Mlg_2017 NC_008340.1 2289957 2292278 R TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein; KEGG: rme:Rmet_1537 (NiFe) hydrogenase maturation protein HypF; (NiFe) hydrogenase maturation protein HypF complement(2289957..2292278) Alkalilimnicola ehrlichii MLHE-1 4269617 YP_742850.1 CDS Mlg_2018 NC_008340.1 2292280 2293227 R TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; KEGG: rfr:Rfer_4096 hydrogenase accessory protein HypB; hydrogenase accessory protein HypB complement(2292280..2293227) Alkalilimnicola ehrlichii MLHE-1 4269618 YP_742851.1 CDS Mlg_2019 NC_008340.1 2293227 2293568 R TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis, HypA; KEGG: rfr:Rfer_4095 hydrogenase nickel insertion protein HypA; hydrogenase nickel insertion protein HypA complement(2293227..2293568) Alkalilimnicola ehrlichii MLHE-1 4269619 YP_742852.1 CDS Mlg_2020 NC_008340.1 2293568 2294707 R KEGG: mag:amb1644 Ni,Fe-hydrogenase I large subunit; hypothetical protein complement(2293568..2294707) Alkalilimnicola ehrlichii MLHE-1 4269620 YP_742853.1 CDS Mlg_2021 NC_008340.1 2294707 2295168 R KEGG: rsp:RSP_0503 HupJ, contains rubredoxin domain; hypothetical protein complement(2294707..2295168) Alkalilimnicola ehrlichii MLHE-1 4269621 YP_742854.1 CDS Mlg_2022 NC_008340.1 2295180 2295404 R PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: rme:Rmet_1289 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein complement(2295180..2295404) Alkalilimnicola ehrlichii MLHE-1 4269622 YP_742855.1 CDS Mlg_2023 NC_008340.1 2295401 2296237 R PFAM: HupH hydrogenase expression protein; KEGG: mca:MCA0161 hydrogenase expression/formation protein; HupH hydrogenase expression protein complement(2295401..2296237) Alkalilimnicola ehrlichii MLHE-1 4269623 YP_742856.1 CDS Mlg_2024 NC_008340.1 2296246 2296683 R PFAM: hydrogenase-1 expression HyaE; KEGG: rme:Rmet_1291 hydrogenase-1 expression HyaE; hydrogenase-1 expression HyaE complement(2296246..2296683) Alkalilimnicola ehrlichii MLHE-1 4268140 YP_742857.1 CDS Mlg_2025 NC_008340.1 2296652 2297038 R TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: dar:Daro_3985 hydrogenase expression/formation protein (HUPF/HYPC); hydrogenase assembly chaperone hypC/hupF complement(2296652..2297038) Alkalilimnicola ehrlichii MLHE-1 4268141 YP_742858.1 CDS Mlg_2026 NC_008340.1 2297038 2297664 R TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; hydrogenase maturation peptidase superfamily; PFAM: peptidase M52, hydrogen uptake protein; KEGG: rme:Rmet_1293 hydrogenase expression/formation protein; HyaD peptidase complement(2297038..2297664) Alkalilimnicola ehrlichii MLHE-1 4268142 YP_742859.1 CDS Mlg_2027 NC_008340.1 2297727 2298449 R TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; KEGG: dar:Daro_3987 nickel-dependent hydrogenase b-type cytochrome subunit; Ni/Fe-hydrogenase, b-type cytochrome subunit complement(2297727..2298449) Alkalilimnicola ehrlichii MLHE-1 4268143 YP_742860.1 CDS Mlg_2028 NC_008340.1 2298497 2300284 R PFAM: nickel-dependent hydrogenase, large subunit; KEGG: mca:MCA0165 nickel-iron hydrogenase, large subunit; nickel-dependent hydrogenase, large subunit complement(2298497..2300284) Alkalilimnicola ehrlichii MLHE-1 4268144 YP_742861.1 CDS Mlg_2029 NC_008340.1 2300285 2301400 R KEGG: rme:Rmet_1298 hydrogenase (NiFe) small subunit (HydA); TIGRFAM: hydrogenase (NiFe) small subunit HydA; Twin-arginine translocation pathway signal; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein; hydrogenase (NiFe) small subunit HydA complement(2300285..2301400) Alkalilimnicola ehrlichii MLHE-1 4268145 YP_742862.1 CDS Mlg_2030 NC_008340.1 2301812 2303818 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: plt:Plut_1539 receptor; TonB-dependent receptor, plug 2301812..2303818 Alkalilimnicola ehrlichii MLHE-1 4268146 YP_742863.1 CDS Mlg_2031 NC_008340.1 2303844 2304656 D KEGG: nme:NMB1475 hypothetical protein; Co2+ ABC transporter periplasmic component-like protein 2303844..2304656 Alkalilimnicola ehrlichii MLHE-1 4268147 YP_742864.1 CDS Mlg_2032 NC_008340.1 2304653 2305111 D KEGG: tdn:Tmden_0060 hypothetical protein; hypothetical protein 2304653..2305111 Alkalilimnicola ehrlichii MLHE-1 4268148 YP_742865.1 CDS Mlg_2033 NC_008340.1 2305098 2305751 D PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: tdn:Tmden_0062 cobalamin (vitamin B12) biosynthesis CbiM protein; cobalamin (vitamin B12) biosynthesis CbiM protein 2305098..2305751 Alkalilimnicola ehrlichii MLHE-1 4268149 YP_742866.1 CDS Mlg_2034 NC_008340.1 2305748 2306308 D KEGG: ade:Adeh_0494 hypothetical protein; hypothetical protein 2305748..2306308 Alkalilimnicola ehrlichii MLHE-1 4268150 YP_742867.1 CDS Mlg_2035 NC_008340.1 2306298 2307056 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ade:Adeh_0493 ABC transporter, ATPase subunit; ABC transporter-like protein 2306298..2307056 Alkalilimnicola ehrlichii MLHE-1 4268151 YP_742868.1 CDS Mlg_2036 NC_008340.1 2307098 2307298 R KEGG: tbd:Tbd_1667 hypothetical protein; hypothetical protein complement(2307098..2307298) Alkalilimnicola ehrlichii MLHE-1 4268152 YP_742869.1 CDS Mlg_2037 NC_008340.1 2307300 2307782 R TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; KEGG: dar:Daro_0538 methylated-DNA-(protein)-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase complement(2307300..2307782) Alkalilimnicola ehrlichii MLHE-1 4268153 YP_742870.1 CDS Mlg_2038 NC_008340.1 2307874 2309751 R TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: reu:Reut_B4490 acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase, large subunit complement(2307874..2309751) Alkalilimnicola ehrlichii MLHE-1 4268154 YP_742871.1 CDS Mlg_2039 NC_008340.1 2309897 2310292 R KEGG: pfo:Pfl_3982 methionine sulfoxide reductase B; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; methionine-R-sulfoxide reductase complement(2309897..2310292) Alkalilimnicola ehrlichii MLHE-1 4268155 YP_742872.1 CDS Mlg_2040 NC_008340.1 2310366 2311091 R PFAM: Silent information regulator protein Sir2; KEGG: pae:PA1125 probable cobalamin biosynthetic protein; silent information regulator protein Sir2 complement(2310366..2311091) Alkalilimnicola ehrlichii MLHE-1 4268156 YP_742873.1 CDS Mlg_2041 NC_008340.1 2311166 2312380 D KEGG: hch:HCH_05403 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: amino acid-binding ACT domain protein; Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase, subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase, type 3; phosphoserine phosphatase 2311166..2312380 Alkalilimnicola ehrlichii MLHE-1 4268157 YP_742874.1 CDS Mlg_2042 NC_008340.1 2312667 2313725 D PFAM: EAL domain protein; KEGG: dde:Dde_1073 diguanylate phosphodiesterase (EAL domain); diguanylate phosphodiesterase 2312667..2313725 Alkalilimnicola ehrlichii MLHE-1 4270176 YP_742875.1 CDS Mlg_2043 NC_008340.1 2313740 2315059 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: dar:Daro_0682 helix-turn-helix, fis-type; Fis family transcriptional regulator complement(2313740..2315059) Alkalilimnicola ehrlichii MLHE-1 4270177 YP_742876.1 CDS Mlg_2044 NC_008340.1 2315215 2316216 R TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; KEGG: csa:Csal_2000 cytochrome d ubiquinol oxidase, subunit II; cytochrome d ubiquinol oxidase, subunit II complement(2315215..2316216) Alkalilimnicola ehrlichii MLHE-1 4270178 YP_742877.1 CDS Mlg_2045 NC_008340.1 2316224 2317636 R PFAM: cytochrome bd ubiquinol oxidase, subunit I; KEGG: csa:Csal_2001 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase, subunit I complement(2316224..2317636) Alkalilimnicola ehrlichii MLHE-1 4270179 YP_742878.1 CDS Mlg_2046 NC_008340.1 2318024 2318845 R PFAM: protein of unknown function DUF81; KEGG: rru:Rru_A1348 protein of unknown function DUF81; hypothetical protein complement(2318024..2318845) Alkalilimnicola ehrlichii MLHE-1 4270180 YP_742879.1 CDS Mlg_2047 NC_008340.1 2318842 2320443 R PFAM: gamma-glutamyltranspeptidase; KEGG: bxe:Bxe_B1050 gamma-glutamyltransferase; gamma-glutamyltransferase 2 complement(2318842..2320443) Alkalilimnicola ehrlichii MLHE-1 4270181 YP_742880.1 CDS Mlg_2048 NC_008340.1 2320634 2321731 D PFAM: histone deacetylase superfamily; KEGG: sat:SYN_00740 histone deacetylase; histone deacetylase superfamily protein 2320634..2321731 Alkalilimnicola ehrlichii MLHE-1 4270182 YP_742881.1 CDS Mlg_2049 NC_008340.1 2321784 2322905 R PFAM: protein of unknown function DUF294, nucleotidyltransferase KEGG: cps:CPS_4954 CBS domain protein; hypothetical protein complement(2321784..2322905) Alkalilimnicola ehrlichii MLHE-1 4270183 YP_742882.1 CDS Mlg_2050 NC_008340.1 2323156 2324937 R PFAM: Na+/solute symporter; KEGG: sde:Sde_3155 ribonuclease E and G; Na+/solute symporter complement(2323156..2324937) Alkalilimnicola ehrlichii MLHE-1 4270184 YP_742883.1 CDS Mlg_2051 NC_008340.1 2324950 2325225 R KEGG: sde:Sde_3156 Maf-like protein; Maf-like protein complement(2324950..2325225) Alkalilimnicola ehrlichii MLHE-1 4270185 YP_742884.1 CDS Mlg_2052 NC_008340.1 2325293 2327284 R PFAM: cyclic nucleotide-binding; CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase KEGG: psb:Psyr_4702 cyclic nucleotide-binding:CBS: nucleotidyltransferase DUF294; cyclic nucleotide-binding protein complement(2325293..2327284) Alkalilimnicola ehrlichii MLHE-1 4270186 YP_742885.1 CDS Mlg_2053 NC_008340.1 2327416 2329560 R KEGG: mag:amb1543 DNA polymerase III; TIGRFAM: PAS sensor protein; DNA polymerase III, epsilon subunit; PFAM: histidine kinase, HAMP region domain protein; Exonuclease, RNase T and DNA polymerase III; PAS fold domain protein; SMART: PAS domain containing protein; Exonuclease; PAS/PAC sensor protein complement(2327416..2329560) Alkalilimnicola ehrlichii MLHE-1 4270187 YP_742886.1 CDS Mlg_2054 NC_008340.1 2329560 2329982 R PFAM: response regulator receiver; KEGG: pol:Bpro_4150 response regulator receiver domain protein (CheY-like); response regulator receiver protein complement(2329560..2329982) Alkalilimnicola ehrlichii MLHE-1 4270188 YP_742887.1 CDS Mlg_2055 NC_008340.1 2330202 2330453 D hypothetical protein 2330202..2330453 Alkalilimnicola ehrlichii MLHE-1 4270189 YP_742888.1 CDS Mlg_2056 NC_008340.1 2330469 2331926 R PFAM: CBS domain containing protein; protein of unknown function DUF294, nucleotidyltransferase KEGG: mag:amb1544 predicted signal-transduction protein containing cAMP-binding and CBS domains; signal-transduction protein complement(2330469..2331926) Alkalilimnicola ehrlichii MLHE-1 4270190 YP_742889.1 CDS Mlg_2057 NC_008340.1 2332096 2332470 D hypothetical protein 2332096..2332470 Alkalilimnicola ehrlichii MLHE-1 4270191 YP_742890.1 CDS Mlg_2058 NC_008340.1 2332446 2333543 R PFAM: proline racemase; KEGG: csa:Csal_2339 proline racemase; proline racemase complement(2332446..2333543) Alkalilimnicola ehrlichii MLHE-1 4270192 YP_742891.1 CDS Mlg_2059 NC_008340.1 2333533 2334633 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mlo:mll7125 alcohol dehydrogenase; alcohol dehydrogenase complement(2333533..2334633) Alkalilimnicola ehrlichii MLHE-1 4270445 YP_742892.1 CDS Mlg_2060 NC_008340.1 2334879 2335259 D hypothetical protein 2334879..2335259 Alkalilimnicola ehrlichii MLHE-1 4270446 YP_742893.1 CDS Mlg_2061 NC_008340.1 2335350 2336678 D PFAM: major facilitator superfamily MFS_1; KEGG: csa:Csal_2623 major facilitator superfamily MFS_1; major facilitator transporter 2335350..2336678 Alkalilimnicola ehrlichii MLHE-1 4270447 YP_742894.1 CDS Mlg_2062 NC_008340.1 2336622 2338865 R PFAM: MscS Mechanosensitive ion channel; KEGG: csa:Csal_0950 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS complement(2336622..2338865) Alkalilimnicola ehrlichii MLHE-1 4270448 YP_742895.1 CDS Mlg_2063 NC_008340.1 2338968 2339984 R PFAM: AIR synthase related protein domain protein; KEGG: tko:TK1032 hydrogenase expression/formation protein HypE; AIR synthase-like protein complement(2338968..2339984) Alkalilimnicola ehrlichii MLHE-1 4270449 YP_742896.1 CDS Mlg_2064 NC_008340.1 2340241 2341614 D KEGG: dar:Daro_0549 TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein 2340241..2341614 Alkalilimnicola ehrlichii MLHE-1 4270450 YP_742897.1 CDS Mlg_2065 NC_008340.1 2341616 2342341 R PFAM: protein of unknown function UPF0066; KEGG: pca:Pcar_2362 uncharacterized ACR; hypothetical protein complement(2341616..2342341) Alkalilimnicola ehrlichii MLHE-1 4270451 YP_742898.1 CDS Mlg_2066 NC_008340.1 2342334 2344088 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: tbd:Tbd_1456 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); diguanylate cyclase/phosphodiesterase complement(2342334..2344088) Alkalilimnicola ehrlichii MLHE-1 4270452 YP_742899.1 CDS Mlg_2067 NC_008340.1 2344199 2344840 R KEGG: tbd:Tbd_2556 thiamine monophosphate synthase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(2344199..2344840) Alkalilimnicola ehrlichii MLHE-1 4270453 YP_742900.1 CDS Mlg_2068 NC_008340.1 2344957 2345127 D PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: bur:Bcep18194_A3960 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 2344957..2345127 Alkalilimnicola ehrlichii MLHE-1 4270454 YP_742901.1 CDS Mlg_2069 NC_008340.1 2345168 2346550 R PFAM: major facilitator superfamily MFS_1; KEGG: lic:LIC13210 permease of the major facilitator superfamily; major facilitator transporter complement(2345168..2346550) Alkalilimnicola ehrlichii MLHE-1 4270455 YP_742902.1 CDS Mlg_2070 NC_008340.1 2347046 2348362 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; KEGG: ilo:IL2363 ATP-dependent RNA helicase; DEAD/DEAH box helicase domain-containing protein 2347046..2348362 Alkalilimnicola ehrlichii MLHE-1 4270456 YP_742903.1 CDS Mlg_2071 NC_008340.1 2348449 2349069 D PFAM: protein of unknown function DUF479; KEGG: pae:PA4353 hypothetical protein; hypothetical protein 2348449..2349069 Alkalilimnicola ehrlichii MLHE-1 4270457 YP_742904.1 CDS Mlg_2072 NC_008340.1 2349159 2350112 D TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: csa:Csal_2671 TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein 2349159..2350112 Alkalilimnicola ehrlichii MLHE-1 4270458 YP_742905.1 CDS Mlg_2073 NC_008340.1 2350167 2352287 D TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: wsu:WS0747 hypothetical protein; TRAP transporter, 4TM/12TM fusion protein 2350167..2352287 Alkalilimnicola ehrlichii MLHE-1 4270459 YP_742906.1 CDS Mlg_2074 NC_008340.1 2352387 2352815 D PFAM: CBS domain containing protein; KEGG: rpc:RPC_4046 CBS domain containing membrane protein; signal transduction protein 2352387..2352815 Alkalilimnicola ehrlichii MLHE-1 4270460 YP_742907.1 CDS Mlg_2075 NC_008340.1 2352829 2353662 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: csa:Csal_1505 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 2352829..2353662 Alkalilimnicola ehrlichii MLHE-1 4270461 YP_742908.1 CDS Mlg_2076 NC_008340.1 2353652 2354407 D PFAM: OmpA/MotB domain protein; KEGG: csa:Csal_1504 OmpA/MotB; OmpA/MotB domain-containing protein 2353652..2354407 Alkalilimnicola ehrlichii MLHE-1 4270462 YP_742909.1 CDS Mlg_2077 NC_008340.1 2354486 2355634 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: eba:ebA784 hypothetical protein; diguanylate cyclase 2354486..2355634 Alkalilimnicola ehrlichii MLHE-1 4269396 YP_742910.1 CDS Mlg_2078 NC_008340.1 2355631 2356311 D PFAM: Rhomboid family protein; KEGG: sru:SRU_0684 cytoplasmic membrane protein; rhomboid family protein 2355631..2356311 Alkalilimnicola ehrlichii MLHE-1 4269397 YP_742911.1 CDS Mlg_2079 NC_008340.1 2356460 2358196 D TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: noc:Noc_0312 type II secretion system protein E; type IV-A pilus assembly ATPase PilB 2356460..2358196 Alkalilimnicola ehrlichii MLHE-1 4269398 YP_742912.1 CDS Mlg_2080 NC_008340.1 2358221 2359474 D PFAM: type II secretion system protein; KEGG: noc:Noc_0311 type II secretion system protein F; type II secretion system protein 2358221..2359474 Alkalilimnicola ehrlichii MLHE-1 4269399 YP_742913.1 CDS Mlg_2081 NC_008340.1 2359476 2360357 D PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: dar:Daro_0637 peptidase A24A, prepilin type IV:peptidase A24A, N-terminal; type 4 prepilin peptidase 2359476..2360357 Alkalilimnicola ehrlichii MLHE-1 4269400 YP_742914.1 CDS Mlg_2082 NC_008340.1 2360357 2361007 D KEGG: sgl:SG0461 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 2360357..2361007 Alkalilimnicola ehrlichii MLHE-1 4269401 YP_742915.1 CDS Mlg_2083 NC_008340.1 2360994 2361851 D PFAM: protein of unknown function DUF1342; KEGG: mca:MCA2091 hypothetical protein; hypothetical protein 2360994..2361851 Alkalilimnicola ehrlichii MLHE-1 4269402 YP_742916.1 CDS Mlg_2084 NC_008340.1 2361885 2362844 R TIGRFAM: mutator MutT protein; PFAM: NUDIX hydrolase; thiamine monophosphate synthase; KEGG: pfl:PFL_4779 mutator MutT protein; hypothetical protein complement(2361885..2362844) Alkalilimnicola ehrlichii MLHE-1 4269403 YP_742917.1 CDS Mlg_2085 NC_008340.1 2362849 2364045 R KEGG: csa:Csal_2180 arginine biosynthesis bifunctional protein ArgJ; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; glutamate N-acetyltransferase complement(2362849..2364045) Alkalilimnicola ehrlichii MLHE-1 4269404 YP_742918.1 CDS Mlg_2086 NC_008340.1 2364056 2366785 R TIGRFAM: preprotein translocase, SecA subunit; PFAM: SEC-C motif domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: noc:Noc_2851 SecA protein; protein translocase subunit secA complement(2364056..2366785) Alkalilimnicola ehrlichii MLHE-1 4269405 YP_742919.1 CDS Mlg_2087 NC_008340.1 2366897 2367361 D KEGG: ppu:PP1344 hypothetical protein; hypothetical protein 2366897..2367361 Alkalilimnicola ehrlichii MLHE-1 4269406 YP_742920.1 CDS Mlg_2088 NC_008340.1 2367372 2368946 R KEGG: pst:PSPTO0949 hypothetical protein; hypothetical protein complement(2367372..2368946) Alkalilimnicola ehrlichii MLHE-1 4269407 YP_742921.1 CDS Mlg_2089 NC_008340.1 2369069 2370118 D catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase 2369069..2370118 Alkalilimnicola ehrlichii MLHE-1 4269408 YP_742922.1 CDS Mlg_2090 NC_008340.1 2370426 2372738 D subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; monovalent cation/H+ antiporter subunit A 2370426..2372738 Alkalilimnicola ehrlichii MLHE-1 4269409 YP_742923.1 CDS Mlg_2091 NC_008340.1 2372740 2373162 D subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit B 2372740..2373162 Alkalilimnicola ehrlichii MLHE-1 4269410 YP_742924.1 CDS Mlg_2092 NC_008340.1 2373164 2373511 D subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C 2373164..2373511 Alkalilimnicola ehrlichii MLHE-1 4269411 YP_742925.1 CDS Mlg_2093 NC_008340.1 2373508 2375013 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: jan:Jann_3692 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 2373508..2375013 Alkalilimnicola ehrlichii MLHE-1 4269412 YP_742926.1 CDS Mlg_2094 NC_008340.1 2375010 2375489 D PFAM: cation antiporter; KEGG: gsu:GSU2340 Na+/H+ ion antiporter family protein; cation antiporter 2375010..2375489 Alkalilimnicola ehrlichii MLHE-1 4270072 YP_742927.1 CDS Mlg_2095 NC_008340.1 2375501 2375773 D PFAM: multiple resistance and pH regulation protein F; KEGG: gsu:GSU2339 monovalent cation/proton antiporter, MrpF/PhaF family; multiple resistance and pH regulation protein F 2375501..2375773 Alkalilimnicola ehrlichii MLHE-1 4270073 YP_742928.1 CDS Mlg_2096 NC_008340.1 2375766 2376185 D TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: gsu:GSU2338 Na+/H+ antiporter component; monovalent cation/proton antiporter subunit MnhG/PhaG 2375766..2376185 Alkalilimnicola ehrlichii MLHE-1 4270074 YP_742929.1 CDS Mlg_2097 NC_008340.1 2376199 2377056 D [carboxylating]; KEGG: pst:PSPTO0948 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 2376199..2377056 Alkalilimnicola ehrlichii MLHE-1 4270075 YP_742930.1 CDS Mlg_2098 NC_008340.1 2377346 2379013 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 2377346..2379013 Alkalilimnicola ehrlichii MLHE-1 4270076 YP_742931.1 CDS Mlg_2099 NC_008340.1 2379261 2380130 D TIGRFAM: formyltetrahydrofolate deformylase; PFAM: formyl transferase domain protein; amino acid-binding ACT domain protein; KEGG: bth:BT1381 formyltetrahydrofolate deformylase; formyltetrahydrofolate deformylase 2379261..2380130 Alkalilimnicola ehrlichii MLHE-1 4270077 YP_742932.1 CDS Mlg_2100 NC_008340.1 2380236 2380451 D KEGG: cps:CPS_2608 hypothetical protein; hypothetical protein 2380236..2380451 Alkalilimnicola ehrlichii MLHE-1 4270078 YP_742933.1 CDS Mlg_2101 NC_008340.1 2380581 2381858 R KEGG: pae:PA5025 O-acetylhomoserine (thiol)-lyase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-acetylhomoserine/O-acetylserine sulfhydrylase complement(2380581..2381858) Alkalilimnicola ehrlichii MLHE-1 4270079 YP_742934.1 CDS Mlg_2102 NC_008340.1 2382428 2385214 D KEGG: mca:MCA1634 ribonucleoside-diphosphate reductase, alpha subunit; TIGRFAM: ribonucleoside-diphosphate reductase, alpha subunit; PFAM: ribonucleotide reductase large subunit; ATP-cone domain protein; Ribonucleotide reductase large subunit, N terminal domain protein; ribonucleoside-diphosphate reductase subunit alpha 2382428..2385214 Alkalilimnicola ehrlichii MLHE-1 4270080 YP_742935.1 CDS Mlg_2103 NC_008340.1 2385790 2386854 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 2385790..2386854 Alkalilimnicola ehrlichii MLHE-1 4270081 YP_742936.1 CDS Mlg_2104 NC_008340.1 2386851 2387777 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: csa:Csal_0671 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2386851..2387777) Alkalilimnicola ehrlichii MLHE-1 4270082 YP_742937.1 CDS Mlg_2105 NC_008340.1 2387875 2390196 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 2387875..2390196 Alkalilimnicola ehrlichii MLHE-1 4270083 YP_742938.1 CDS Mlg_2106 NC_008340.1 2390602 2391087 D hypothetical protein 2390602..2391087 Alkalilimnicola ehrlichii MLHE-1 4270084 YP_742939.1 CDS Mlg_2107 NC_008340.1 2391229 2391321 D hypothetical protein 2391229..2391321 Alkalilimnicola ehrlichii MLHE-1 4270085 YP_742940.1 CDS Mlg_2108 NC_008340.1 2391351 2393306 R AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase complement(2391351..2393306) Alkalilimnicola ehrlichii MLHE-1 4270086 YP_742941.1 CDS Mlg_2109 NC_008340.1 2393692 2394519 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ade:Adeh_3760 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 2393692..2394519 Alkalilimnicola ehrlichii MLHE-1 4270087 YP_742942.1 CDS fadI NC_008340.1 2394655 2395971 D FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 2394655..2395971 Alkalilimnicola ehrlichii MLHE-1 4270088 YP_742943.1 CDS Mlg_2111 NC_008340.1 2395968 2398112 D PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: ilo:IL0993 fatty oxidation complex, alpha subunit; short chain enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 2395968..2398112 Alkalilimnicola ehrlichii MLHE-1 4270089 YP_742944.1 CDS Mlg_2112 NC_008340.1 2398607 2399134 R KEGG: bba:Bd0666 hypothetical protein; hypothetical protein complement(2398607..2399134) Alkalilimnicola ehrlichii MLHE-1 4269362 YP_742945.1 CDS Mlg_2113 NC_008340.1 2399620 2400714 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: csa:Csal_3004 membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 2399620..2400714 Alkalilimnicola ehrlichii MLHE-1 4269363 YP_742946.1 CDS Mlg_2114 NC_008340.1 2400923 2401660 D PFAM: phosphoadenosine phosphosulfate reductase; KEGG: yps:YPTB0761 phosphoadenosine phosphosulfate reductase; phosphoadenylylsulfate reductase 2400923..2401660 Alkalilimnicola ehrlichii MLHE-1 4269364 YP_742947.1 CDS Mlg_2115 NC_008340.1 2401784 2402098 R KEGG: mag:amb2940 hypothetical protein; hypothetical protein complement(2401784..2402098) Alkalilimnicola ehrlichii MLHE-1 4269365 YP_742948.1 CDS Mlg_2116 NC_008340.1 2402102 2402698 R PFAM: cytochrome c oxidase, subunit III; KEGG: mag:amb2941 heme/copper-type cytochrome/quinol oxidase, subunit 3; cytochrome c oxidase, subunit III complement(2402102..2402698) Alkalilimnicola ehrlichii MLHE-1 4269366 YP_742949.1 CDS Mlg_2117 NC_008340.1 2402895 2403347 D KEGG: neu:NE2003 nitric oxide reductase, cytochrome c-containing subunit; nitric-oxide reductase 2402895..2403347 Alkalilimnicola ehrlichii MLHE-1 4269367 YP_742950.1 CDS Mlg_2118 NC_008340.1 2403408 2404751 D PFAM: cytochrome c oxidase, subunit I; KEGG: neu:NE2004 cytochrome c oxidase, subunit I; cytochrome c oxidase, subunit I 2403408..2404751 Alkalilimnicola ehrlichii MLHE-1 4269368 YP_742951.1 CDS Mlg_2119 NC_008340.1 2404862 2405674 D PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: noc:Noc_1848 ATPase associated with various cellular activities, AAA_5; ATPase 2404862..2405674 Alkalilimnicola ehrlichii MLHE-1 4269369 YP_742952.1 CDS Mlg_2120 NC_008340.1 2405703 2407646 D PFAM: von Willebrand factor, type A; KEGG: noc:Noc_1847 nitric oxide reductase activation protein; von Willebrand factor A 2405703..2407646 Alkalilimnicola ehrlichii MLHE-1 4269370 YP_742953.1 CDS Mlg_2121 NC_008340.1 2407856 2408251 R KEGG: ccr:CC0412 hypothetical protein; hypothetical protein complement(2407856..2408251) Alkalilimnicola ehrlichii MLHE-1 4269371 YP_742954.1 CDS Mlg_2122 NC_008340.1 2408392 2411031 D KEGG: sat:SYN_02383 phosphoenolpyruvate synthase; phosphoenolpyruvate synthase 2408392..2411031 Alkalilimnicola ehrlichii MLHE-1 4269372 YP_742955.1 CDS Mlg_2123 NC_008340.1 2411135 2412484 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(2411135..2412484) Alkalilimnicola ehrlichii MLHE-1 4269373 YP_742956.1 CDS Mlg_2124 NC_008340.1 2412706 2415180 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(2412706..2415180) Alkalilimnicola ehrlichii MLHE-1 4269374 YP_742957.1 CDS Mlg_2125 NC_008340.1 2415197 2416387 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(2415197..2416387) Alkalilimnicola ehrlichii MLHE-1 4269375 YP_742958.1 CDS Mlg_2126 NC_008340.1 2416423 2418840 R PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: neu:NE1528 3-hydroxyacyl-CoA dehydrogenase oxidoreductase; 3-hydroxyacyl-CoA dehydrogenase complement(2416423..2418840) Alkalilimnicola ehrlichii MLHE-1 4269376 YP_742959.1 CDS Mlg_2127 NC_008340.1 2418857 2420719 R PFAM: AMP-dependent synthetase and ligase; KEGG: neu:NE1549 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase complement(2418857..2420719) Alkalilimnicola ehrlichii MLHE-1 4269377 YP_742960.1 CDS fadE NC_008340.1 2420742 2423066 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(2420742..2423066) Alkalilimnicola ehrlichii MLHE-1 4269378 YP_742961.1 CDS Mlg_2129 NC_008340.1 2423214 2423903 R PFAM: regulatory protein, TetR; KEGG: eba:c1A220 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2423214..2423903) Alkalilimnicola ehrlichii MLHE-1 4269869 YP_742962.1 CDS Mlg_2130 NC_008340.1 2424128 2425099 D PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: noc:Noc_1382 heat shock protein DnaJ-like; molecular chaperone DnaJ 2424128..2425099 Alkalilimnicola ehrlichii MLHE-1 4269870 YP_742963.1 CDS Mlg_2131 NC_008340.1 2425105 2425428 D KEGG: noc:Noc_1383 transcriptional regulator, MerR family; MerR family transcriptional regulator 2425105..2425428 Alkalilimnicola ehrlichii MLHE-1 4269871 YP_742964.1 CDS metH NC_008340.1 2425553 2429290 D one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 2425553..2429290 Alkalilimnicola ehrlichii MLHE-1 4269872 YP_742965.1 CDS Mlg_2133 NC_008340.1 2429597 2430367 D PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: pae:PA1544 transcriptional regulator Anr; Crp/Fnr family transcriptional regulator 2429597..2430367 Alkalilimnicola ehrlichii MLHE-1 4269873 YP_742966.1 CDS Mlg_2134 NC_008340.1 2430342 2430815 R KEGG: pae:PA3911 hypothetical protein; hypothetical protein complement(2430342..2430815) Alkalilimnicola ehrlichii MLHE-1 4269874 YP_742967.1 CDS Mlg_2135 NC_008340.1 2430812 2431750 R PFAM: peptidase U32; KEGG: pae:PA3912 hypothetical protein; peptidase U32 complement(2430812..2431750) Alkalilimnicola ehrlichii MLHE-1 4269875 YP_742968.1 CDS Mlg_2136 NC_008340.1 2431747 2432742 R PFAM: peptidase U32; KEGG: yps:YPTB0495 protease; peptidase U32 complement(2431747..2432742) Alkalilimnicola ehrlichii MLHE-1 4269876 YP_742969.1 CDS Mlg_2137 NC_008340.1 2433464 2434519 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rme:Rmet_5645 alcohol dehydrogenase, zinc-binding; alcohol dehydrogenase 2433464..2434519 Alkalilimnicola ehrlichii MLHE-1 4269877 YP_742970.1 CDS Mlg_2138 NC_008340.1 2434516 2434902 D KEGG: ade:Adeh_3030 hypothetical protein; hypothetical protein 2434516..2434902 Alkalilimnicola ehrlichii MLHE-1 4269878 YP_742971.1 CDS Mlg_2139 NC_008340.1 2434924 2435655 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sdy:SDY_0787 ATP-binding component of glutamine high-affinity transport system; ABC transporter-like protein complement(2434924..2435655) Alkalilimnicola ehrlichii MLHE-1 4269879 YP_742972.1 CDS Mlg_2140 NC_008340.1 2435652 2436308 R TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bur:Bcep18194_B1960 ABC polar amino acid transporter, inner membrane subunit; polar amino acid ABC transporter, inner membrane subunit complement(2435652..2436308) Alkalilimnicola ehrlichii MLHE-1 4269880 YP_742973.1 CDS Mlg_2141 NC_008340.1 2436395 2437138 R PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; KEGG: ypm:YP2327 glutamine-binding periplasmic protein; extracellular solute-binding protein complement(2436395..2437138) Alkalilimnicola ehrlichii MLHE-1 4269881 YP_742974.1 CDS Mlg_2142 NC_008340.1 2437256 2438002 R PFAM: protein of unknown function DUF159; KEGG: gvi:gll2498 hypothetical protein; hypothetical protein complement(2437256..2438002) Alkalilimnicola ehrlichii MLHE-1 4269882 YP_742975.1 CDS Mlg_2143 NC_008340.1 2438079 2438597 D hypothetical protein 2438079..2438597 Alkalilimnicola ehrlichii MLHE-1 4269883 YP_742976.1 CDS Mlg_2144 NC_008340.1 2438594 2439265 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: sde:Sde_0124 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2438594..2439265 Alkalilimnicola ehrlichii MLHE-1 4269884 YP_742977.1 CDS Mlg_2145 NC_008340.1 2439772 2441190 D PFAM: outer membrane efflux protein; KEGG: ava:Ava_1015 outer membrane efflux protein; outer membrane efflux protein 2439772..2441190 Alkalilimnicola ehrlichii MLHE-1 4269885 YP_742978.1 CDS Mlg_2146 NC_008340.1 2441193 2442446 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: gsu:GSU0496 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2441193..2442446 Alkalilimnicola ehrlichii MLHE-1 4269886 YP_742979.1 CDS Mlg_2147 NC_008340.1 2442456 2443193 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pca:Pcar_0366 ATP-binding protein of ABC transporter; ABC transporter-like protein 2442456..2443193 Alkalilimnicola ehrlichii MLHE-1 4270142 YP_742980.1 CDS Mlg_2148 NC_008340.1 2443190 2444416 D PFAM: protein of unknown function DUF214; KEGG: gme:Gmet_3036 protein of unknown function DUF214; hypothetical protein 2443190..2444416 Alkalilimnicola ehrlichii MLHE-1 4270143 YP_742981.1 CDS Mlg_2149 NC_008340.1 2444409 2444936 D hypothetical protein 2444409..2444936 Alkalilimnicola ehrlichii MLHE-1 4270144 YP_742982.1 CDS Mlg_2150 NC_008340.1 2445306 2445866 D PFAM: peptidase C39, bacteriocin processing; KEGG: ngo:NGO0427 hypothetical protein; peptidase C39, bacteriocin processing 2445306..2445866 Alkalilimnicola ehrlichii MLHE-1 4270145 YP_742983.1 CDS Mlg_2151 NC_008340.1 2445966 2446760 R PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: ppu:PP0574 DNA-binding response regulator, LuxR family; LuxR family transcriptional regulator complement(2445966..2446760) Alkalilimnicola ehrlichii MLHE-1 4270146 YP_742984.1 CDS Mlg_2152 NC_008340.1 2446832 2449336 R KEGG: pst:PSPTO4833 sensory box histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase complement(2446832..2449336) Alkalilimnicola ehrlichii MLHE-1 4270147 YP_742985.1 CDS Mlg_2153 NC_008340.1 2449407 2449796 R PFAM: response regulator receiver; KEGG: bba:Bd3035 nitrogen assimilation regulatory protein NtrX; response regulator receiver protein complement(2449407..2449796) Alkalilimnicola ehrlichii MLHE-1 4270148 YP_742986.1 CDS Mlg_2154 NC_008340.1 2449817 2450341 R PFAM: TadE family protein; KEGG: pfo:Pfl_0638 TadE-like; TadE family protein complement(2449817..2450341) Alkalilimnicola ehrlichii MLHE-1 4270149 YP_742987.1 CDS Mlg_2155 NC_008340.1 2450338 2452149 R KEGG: pae:PA4297 hypothetical protein; hypothetical protein complement(2450338..2452149) Alkalilimnicola ehrlichii MLHE-1 4270150 YP_742988.1 CDS Mlg_2156 NC_008340.1 2452178 2452495 R KEGG: pae:PA4298 hypothetical protein; hypothetical protein complement(2452178..2452495) Alkalilimnicola ehrlichii MLHE-1 4270151 YP_742989.1 CDS Mlg_2157 NC_008340.1 2452511 2453272 R KEGG: pae:PA4299 hypothetical protein; hypothetical protein complement(2452511..2453272) Alkalilimnicola ehrlichii MLHE-1 4270152 YP_742990.1 CDS Mlg_2158 NC_008340.1 2453259 2454197 R PFAM: type II secretion system protein; KEGG: pae:PA4300 hypothetical protein; type II secretion system protein complement(2453259..2454197) Alkalilimnicola ehrlichii MLHE-1 4270153 YP_742991.1 CDS Mlg_2159 NC_008340.1 2454214 2455098 R PFAM: type II secretion system protein; KEGG: pfo:Pfl_0645 type II secretion system protein; type II secretion system protein complement(2454214..2455098) Alkalilimnicola ehrlichii MLHE-1 4270154 YP_742992.1 CDS Mlg_2160 NC_008340.1 2455108 2456424 R PFAM: type II secretion system protein E; KEGG: pae:PA4302 probable type II secretion system protein; type II secretion system protein E complement(2455108..2456424) Alkalilimnicola ehrlichii MLHE-1 4270155 YP_742993.1 CDS Mlg_2161 NC_008340.1 2456424 2457644 R KEGG: pae:PA4303 pilus assembly protein CpaE; pilus assembly protein CpaE complement(2456424..2457644) Alkalilimnicola ehrlichii MLHE-1 4270156 YP_742994.1 CDS Mlg_2162 NC_008340.1 2457634 2458920 R PFAM: type II and III secretion system protein; KEGG: pfo:Pfl_0648 type II and III secretion system protein; type II and III secretion system protein complement(2457634..2458920) Alkalilimnicola ehrlichii MLHE-1 4270157 YP_742995.1 CDS Mlg_2163 NC_008340.1 2458946 2459896 R KEGG: pae:PA4305 pilus assembly protein CpaB; Flp pilus assembly protein CpaB-like protein complement(2458946..2459896) Alkalilimnicola ehrlichii MLHE-1 4270158 YP_742996.1 CDS Mlg_2164 NC_008340.1 2460171 2460356 D PFAM: Flp/Fap pilin component; KEGG: psb:Psyr_4389 Flp/Fap pilin component; Flp/Fap pilin component 2460171..2460356 Alkalilimnicola ehrlichii MLHE-1 4270943 YP_742997.1 CDS Mlg_2165 NC_008340.1 2460356 2460856 D PFAM: peptidase A24A, prepilin type IV; KEGG: mfa:Mfla_1645 peptidase A24A, prepilin type IV; peptidase A24A, prepilin type IV 2460356..2460856 Alkalilimnicola ehrlichii MLHE-1 4270944 YP_742998.1 CDS Mlg_2166 NC_008340.1 2461026 2462309 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: ppu:PP0803 protein secretion ABC efflux system, membrane fusion protein; HlyD family type I secretion membrane fusion protein complement(2461026..2462309) Alkalilimnicola ehrlichii MLHE-1 4270945 YP_742999.1 CDS Mlg_2167 NC_008340.1 2462302 2464491 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ppu:PP0804 protein secretion ABC efflux system, permease and ATP-binding protein; ABC transporter-like protein complement(2462302..2464491) Alkalilimnicola ehrlichii MLHE-1 4270946 YP_743000.1 CDS Mlg_2168 NC_008340.1 2464488 2465867 R PFAM: outer membrane efflux protein; KEGG: ppu:PP0805 outer membrane efflux protein; outer membrane efflux protein complement(2464488..2465867) Alkalilimnicola ehrlichii MLHE-1 4270947 YP_743001.1 CDS Mlg_2169 NC_008340.1 2465867 2467780 R KEGG: ppu:PP0806 surface adhesion protein; hypothetical protein complement(2465867..2467780) Alkalilimnicola ehrlichii MLHE-1 4270948 YP_743002.1 CDS Mlg_2170 NC_008340.1 2467894 2468724 R PFAM: OmpA/MotB domain protein; KEGG: bte:BTH_II1488 outer membrane lipoprotein, OmpA/SmpA/OmlA family; OmpA/MotB domain-containing protein complement(2467894..2468724) Alkalilimnicola ehrlichii MLHE-1 4270949 YP_743003.1 CDS Mlg_2171 NC_008340.1 2468969 2470195 D PFAM: EAL domain protein; response regulator receiver; KEGG: vpa:VPA0737 two-component response regulator; response regulator receiver modulated diguanylate phosphodiesterase 2468969..2470195 Alkalilimnicola ehrlichii MLHE-1 4270950 YP_743004.1 CDS Mlg_2172 NC_008340.1 2470213 2471223 D hypothetical protein 2470213..2471223 Alkalilimnicola ehrlichii MLHE-1 4270951 YP_743005.1 CDS Mlg_2173 NC_008340.1 2471256 2471960 R KEGG: noc:Noc_0984 hypothetical protein; hypothetical protein complement(2471256..2471960) Alkalilimnicola ehrlichii MLHE-1 4270952 YP_743006.1 CDS Mlg_2174 NC_008340.1 2471996 2472601 D PFAM: protein of unknown function UPF0029; KEGG: hch:HCH_06880 hypothetical protein; hypothetical protein 2471996..2472601 Alkalilimnicola ehrlichii MLHE-1 4270953 YP_743007.1 CDS Mlg_2175 NC_008340.1 2472727 2473713 D PFAM: protein of unknown function DUF900, hydrolase; KEGG: vfi:VFA0139 hypothetical protein; hypothetical protein 2472727..2473713 Alkalilimnicola ehrlichii MLHE-1 4270954 YP_743008.1 CDS Mlg_2176 NC_008340.1 2473745 2474776 R KEGG: pai:PAE3316 oligopeptide transport ATP-binding protein, TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(2473745..2474776) Alkalilimnicola ehrlichii MLHE-1 4270955 YP_743009.1 CDS Mlg_2177 NC_008340.1 2474773 2475738 R KEGG: pai:PAE3317 oligopeptide transport ATP-binding protein, TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(2474773..2475738) Alkalilimnicola ehrlichii MLHE-1 4270956 YP_743010.1 CDS Mlg_2178 NC_008340.1 2475743 2477080 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tko:TK1802 ABC-type dipeptide/oligopeptide transport system, permease component; binding-protein-dependent transport systems inner membrane component complement(2475743..2477080) Alkalilimnicola ehrlichii MLHE-1 4270957 YP_743011.1 CDS Mlg_2179 NC_008340.1 2477077 2478195 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pai:PAE3087 oligopeptide ABC transporter, permease; binding-protein-dependent transport systems inner membrane component complement(2477077..2478195) Alkalilimnicola ehrlichii MLHE-1 4270958 YP_743012.1 CDS Mlg_2180 NC_008340.1 2478192 2480780 R KEGG: pai:PAE3088 oligopeptide binding protein; solute binding protein-like protein complement(2478192..2480780) Alkalilimnicola ehrlichii MLHE-1 4270959 YP_743013.1 CDS Mlg_2181 NC_008340.1 2481023 2481622 D KEGG: son:SO1968 hypothetical protein; hypothetical protein 2481023..2481622 Alkalilimnicola ehrlichii MLHE-1 4270960 YP_743014.1 CDS Mlg_2182 NC_008340.1 2481695 2482132 R KEGG: cbu:CBU_0714 hypothetical protein; hypothetical protein complement(2481695..2482132) Alkalilimnicola ehrlichii MLHE-1 4270961 YP_743015.1 CDS Mlg_2183 NC_008340.1 2482184 2483407 D PFAM: major facilitator superfamily MFS_1; KEGG: sde:Sde_2675 initiation factor 2; major facilitator transporter 2482184..2483407 Alkalilimnicola ehrlichii MLHE-1 4270962 YP_743016.1 CDS Mlg_2184 NC_008340.1 2483420 2484067 R PFAM: beta-lactamase domain protein; KEGG: eba:ebA2717 metallo-beta-lactamase; beta-lactamase domain-containing protein complement(2483420..2484067) Alkalilimnicola ehrlichii MLHE-1 4270963 YP_743017.1 CDS Mlg_2185 NC_008340.1 2484174 2490701 D KEGG: gme:Gmet_2580 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase; excinuclease ABC subunit A 2484174..2490701 Alkalilimnicola ehrlichii MLHE-1 4270964 YP_743018.1 CDS lpxC NC_008340.1 2490801 2491718 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(2490801..2491718) Alkalilimnicola ehrlichii MLHE-1 4270965 YP_743019.1 CDS Mlg_2187 NC_008340.1 2491891 2493030 R TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: hch:HCH_05877 cell division protein FtsZ; cell division protein FtsZ complement(2491891..2493030) Alkalilimnicola ehrlichii MLHE-1 4270966 YP_743020.1 CDS Mlg_2188 NC_008340.1 2493122 2494360 R PFAM: cell division protein FtsA; KEGG: mca:MCA2424 cell division protein FtsA; cell division protein FtsA complement(2493122..2494360) Alkalilimnicola ehrlichii MLHE-1 4270967 YP_743021.1 CDS Mlg_2189 NC_008340.1 2494387 2495202 R PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; KEGG: psp:PSPPH_4105 cell division protein FtsQ; polypeptide-transport-associated domain-containing protein complement(2494387..2495202) Alkalilimnicola ehrlichii MLHE-1 4270968 YP_743022.1 CDS ddl NC_008340.1 2495199 2496134 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(2495199..2496134) Alkalilimnicola ehrlichii MLHE-1 4270969 YP_743023.1 CDS murB NC_008340.1 2496131 2497027 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(2496131..2497027) Alkalilimnicola ehrlichii MLHE-1 4270970 YP_743024.1 CDS murC NC_008340.1 2497024 2498463 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(2497024..2498463) Alkalilimnicola ehrlichii MLHE-1 4270971 YP_743025.1 CDS murG NC_008340.1 2498460 2499533 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase complement(2498460..2499533) Alkalilimnicola ehrlichii MLHE-1 4270972 YP_743026.1 CDS Mlg_2194 NC_008340.1 2499530 2500735 R TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: noc:Noc_2862 cell cycle protein, FtsW; cell division protein FtsW complement(2499530..2500735) Alkalilimnicola ehrlichii MLHE-1 4270973 YP_743027.1 CDS murD NC_008340.1 2500728 2502077 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(2500728..2502077) Alkalilimnicola ehrlichii MLHE-1 4270974 YP_743028.1 CDS mraY NC_008340.1 2502080 2503162 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(2502080..2503162) Alkalilimnicola ehrlichii MLHE-1 4270975 YP_743029.1 CDS Mlg_2197 NC_008340.1 2503163 2504518 R TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein; KEGG: noc:Noc_2865 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D -alanyl ligase; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(2503163..2504518) Alkalilimnicola ehrlichii MLHE-1 4270976 YP_743030.1 CDS murE NC_008340.1 2504515 2506011 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(2504515..2506011) Alkalilimnicola ehrlichii MLHE-1 4270977 YP_743031.1 CDS Mlg_2199 NC_008340.1 2506008 2507744 R PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: noc:Noc_2867 peptidoglycan glycosyltransferase; peptidoglycan synthetase FtsI complement(2506008..2507744) Alkalilimnicola ehrlichii MLHE-1 4268670 YP_743032.1 CDS Mlg_2200 NC_008340.1 2507767 2508042 R PFAM: cell division protein FtsL; KEGG: xcb:XC_3516 cell division protein; cell division protein FtsL complement(2507767..2508042) Alkalilimnicola ehrlichii MLHE-1 4268671 YP_743033.1 CDS mraW NC_008340.1 2508039 2508992 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: eba:ebA1452 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW complement(2508039..2508992) Alkalilimnicola ehrlichii MLHE-1 4268672 YP_743034.1 CDS Mlg_2202 NC_008340.1 2508989 2509441 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(2508989..2509441) Alkalilimnicola ehrlichii MLHE-1 4268673 YP_743035.1 CDS Mlg_2203 NC_008340.1 2510180 2511028 R TIGRFAM: Protein of unknown function UPF0011; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ecc:c3899 hypothetical protein YraL; hypothetical protein complement(2510180..2511028) Alkalilimnicola ehrlichii MLHE-1 4268675 YP_743036.1 CDS Mlg_2204 NC_008340.1 2511157 2513043 D PFAM: LppC family lipoprotein; Tetratricopeptide TPR_2 repeat protein; KEGG: noc:Noc_0356 LppC lipoprotein; LppC family lipoprotein 2511157..2513043 Alkalilimnicola ehrlichii MLHE-1 4268676 YP_743037.1 CDS Mlg_2205 NC_008340.1 2513040 2513420 D PFAM: protein of unknown function UPF0102; KEGG: bbr:BB4515 predicted endonuclease; hypothetical protein 2513040..2513420 Alkalilimnicola ehrlichii MLHE-1 4268677 YP_743038.1 CDS Mlg_2206 NC_008340.1 2513499 2514089 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 2513499..2514089 Alkalilimnicola ehrlichii MLHE-1 4268678 YP_743039.1 CDS Mlg_2207 NC_008340.1 2514126 2514539 R PFAM: Stringent starvation protein B; KEGG: hch:HCH_10003 stringent starvation protein B; ClpXP protease specificity-enhancing factor complement(2514126..2514539) Alkalilimnicola ehrlichii MLHE-1 4268679 YP_743040.1 CDS Mlg_2208 NC_008340.1 2514565 2515188 R PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: mca:MCA1959 stringent starvation protein A; glutathione S-transferase complement(2514565..2515188) Alkalilimnicola ehrlichii MLHE-1 4268680 YP_743041.1 CDS Mlg_2209 NC_008340.1 2515267 2516001 R PFAM: cytochrome c1; KEGG: nmu:Nmul_A1003 cytochrome c1; cytochrome c1 complement(2515267..2516001) Alkalilimnicola ehrlichii MLHE-1 4268681 YP_743042.1 CDS Mlg_2210 NC_008340.1 2516001 2517242 R PFAM: Cytochrome b/b6, N-terminal domain; Cytochrome b/b6, C-terminal domain; KEGG: pae:PA4430 ubiquinol-cytochrome c reductase cytochrome b subunit; cytochrome b/b6 complement(2516001..2517242) Alkalilimnicola ehrlichii MLHE-1 4268682 YP_743043.1 CDS Mlg_2211 NC_008340.1 2517242 2517841 R KEGG: noc:Noc_0299 ubiquinol-cytochrome c reductase, iron-sulfur subunit; TIGRFAM: ubiquinol-cytochrome c reductase, iron-sulfur subunit; PFAM: Rieske [2Fe-2S] domain protein; ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(2517242..2517841) Alkalilimnicola ehrlichii MLHE-1 4268683 YP_743044.1 CDS Mlg_2212 NC_008340.1 2518116 2518907 R PFAM: protein of unknown function DUF34; KEGG: hch:HCH_05302 hypothetical protein; hypothetical protein complement(2518116..2518907) Alkalilimnicola ehrlichii MLHE-1 4268684 YP_743045.1 CDS Mlg_2213 NC_008340.1 2518981 2520207 D PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: csa:Csal_2211 peptidase S1 and S6, chymotrypsin/Hap; peptidase S1 and S6, chymotrypsin/Hap 2518981..2520207 Alkalilimnicola ehrlichii MLHE-1 4268685 YP_743046.1 CDS Mlg_2214 NC_008340.1 2520199 2521296 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(2520199..2521296) Alkalilimnicola ehrlichii MLHE-1 4268686 YP_743047.1 CDS hisD NC_008340.1 2521293 2522609 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(2521293..2522609) Alkalilimnicola ehrlichii MLHE-1 4269430 YP_743048.1 CDS hisG NC_008340.1 2522670 2523317 R short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase complement(2522670..2523317) Alkalilimnicola ehrlichii MLHE-1 4269431 YP_743049.1 CDS Mlg_2217 NC_008340.1 2523348 2524604 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(2523348..2524604) Alkalilimnicola ehrlichii MLHE-1 4269432 YP_743050.1 CDS Mlg_2218 NC_008340.1 2524609 2524854 R PFAM: BolA family protein; KEGG: dar:Daro_3394 BolA-like protein; BolA family protein complement(2524609..2524854) Alkalilimnicola ehrlichii MLHE-1 4269433 YP_743051.1 CDS Mlg_2219 NC_008340.1 2524972 2525301 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: noc:Noc_2783 sulfate transporter/antisigma-factor antagonist STAS; anti-sigma-factor antagonist complement(2524972..2525301) Alkalilimnicola ehrlichii MLHE-1 4269434 YP_743052.1 CDS Mlg_2220 NC_008340.1 2525298 2525921 R PFAM: toluene tolerance family protein; KEGG: mfa:Mfla_0240 toluene tolerance; toluene tolerance family protein complement(2525298..2525921) Alkalilimnicola ehrlichii MLHE-1 4269435 YP_743053.1 CDS Mlg_2221 NC_008340.1 2525936 2526397 R PFAM: Mammalian cell entry related domain protein; KEGG: noc:Noc_2784 ABC-type transport system involved in resistance to organic solvents periplasmic component; hypothetical protein complement(2525936..2526397) Alkalilimnicola ehrlichii MLHE-1 4269436 YP_743054.1 CDS Mlg_2222 NC_008340.1 2526428 2527207 R PFAM: protein of unknown function DUF140; KEGG: mca:MCA1968 ABC transport system permease; hypothetical protein complement(2526428..2527207) Alkalilimnicola ehrlichii MLHE-1 4269437 YP_743055.1 CDS Mlg_2223 NC_008340.1 2527204 2528034 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA1969 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2527204..2528034) Alkalilimnicola ehrlichii MLHE-1 4269438 YP_743056.1 CDS Mlg_2224 NC_008340.1 2528213 2529196 D TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: csa:Csal_2006 K+-dependent Na+/Ca+ exchanger related-protein; CaCA family Na(+)/Ca(+) antiporter 2528213..2529196 Alkalilimnicola ehrlichii MLHE-1 4269439 YP_743057.1 CDS Mlg_2225 NC_008340.1 2529229 2530254 D KEGG: noc:Noc_2788 sugar phosphate isomerase involved in capsule formation, KpsF/GutQ; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 2529229..2530254 Alkalilimnicola ehrlichii MLHE-1 4269440 YP_743058.1 CDS Mlg_2226 NC_008340.1 2530264 2530839 D TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; KEGG: bbr:BB4502 probable hydrolase; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 2530264..2530839 Alkalilimnicola ehrlichii MLHE-1 4269441 YP_743059.1 CDS Mlg_2227 NC_008340.1 2530823 2531401 D PFAM: protein of unknown function DUF1239; KEGG: noc:Noc_2790 protein of unknown function DUF1239; hypothetical protein 2530823..2531401 Alkalilimnicola ehrlichii MLHE-1 4269442 YP_743060.1 CDS Mlg_2228 NC_008340.1 2531388 2531915 D PFAM: OstA family protein; KEGG: tbd:Tbd_0535 OstA-like family protein; OstA family protein 2531388..2531915 Alkalilimnicola ehrlichii MLHE-1 4269443 YP_743061.1 CDS Mlg_2229 NC_008340.1 2531912 2532637 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppu:PP0953 ABC transporter, ATP-binding protein; ABC transporter-like protein 2531912..2532637 Alkalilimnicola ehrlichii MLHE-1 4269444 YP_743062.1 CDS Mlg_2230 NC_008340.1 2532778 2534295 D TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: pae:PA4462 RNA polymerase sigma-54 factor; RNA polymerase sigma-54 subunit RpoN 2532778..2534295 Alkalilimnicola ehrlichii MLHE-1 4269445 YP_743063.1 CDS Mlg_2231 NC_008340.1 2534320 2534661 D TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: tcx:Tcr_0972 sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/SSU ribosomal protein S30P 2534320..2534661 Alkalilimnicola ehrlichii MLHE-1 4269446 YP_743064.1 CDS Mlg_2232 NC_008340.1 2534680 2535192 D PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: noc:Noc_2795 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PTS IIA-like nitrogen-regulatory protein PtsN 2534680..2535192 Alkalilimnicola ehrlichii MLHE-1 4270264 YP_743065.1 CDS Mlg_2233 NC_008340.1 2535238 2536104 D PFAM: Uncharacterised P-loop ATPase UPF0042; KEGG: noc:Noc_2797 uncharacterized P-loop ATPase UPF0042; hypothetical protein 2535238..2536104 Alkalilimnicola ehrlichii MLHE-1 4270265 YP_743066.1 CDS Mlg_2234 NC_008340.1 2536101 2536460 D TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: sde:Sde_3182 HNH nuclease; HPr family phosphocarrier protein 2536101..2536460 Alkalilimnicola ehrlichii MLHE-1 4270266 YP_743067.1 CDS Mlg_2235 NC_008340.1 2536560 2536928 D KEGG: hch:HCH_01809 hypothetical protein; hypothetical protein 2536560..2536928 Alkalilimnicola ehrlichii MLHE-1 4270267 YP_743068.1 CDS Mlg_2236 NC_008340.1 2536972 2538120 R KEGG: tbd:Tbd_2662 phosphoribosylaminoimidazole carboxylase, ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; phosphoribosylaminoimidazole carboxylase complement(2536972..2538120) Alkalilimnicola ehrlichii MLHE-1 4270268 YP_743069.1 CDS Mlg_2237 NC_008340.1 2538117 2538611 R KEGG: eba:ebA116 phosphoribosylaminoimidazole carboxylase catalytic subunit (AIR carboxylase) (AIRC), gene: PurE or BSU06420; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase, catalytic subunit complement(2538117..2538611) Alkalilimnicola ehrlichii MLHE-1 4270269 YP_743070.1 CDS Mlg_2238 NC_008340.1 2538719 2538955 D PFAM: protein of unknown function DUF1078 domain protein; KEGG: sdn:Sden_1776 conserved hypothetical methyl-accepting chemotaxis protein; hypothetical protein 2538719..2538955 Alkalilimnicola ehrlichii MLHE-1 4270270 YP_743071.1 CDS Mlg_2239 NC_008340.1 2539585 2541393 R TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: mag:amb3725 poly(3-hydroxyalkanoate) synthetase; poly(R)-hydroxyalkanoic acid synthase, class I complement(2539585..2541393) Alkalilimnicola ehrlichii MLHE-1 4270271 YP_743072.1 CDS Mlg_2240 NC_008340.1 2541508 2542302 D PFAM: protein of unknown function DUF548; KEGG: cvi:CV0463 hypothetical protein; hypothetical protein 2541508..2542302 Alkalilimnicola ehrlichii MLHE-1 4270272 YP_743073.1 CDS Mlg_2241 NC_008340.1 2543858 2544250 R PFAM: ribosomal protein S9; KEGG: ilo:IL0415 ribosomal protein S9; 30S ribosomal protein S9 complement(2543858..2544250) Alkalilimnicola ehrlichii MLHE-1 4270274 YP_743074.1 CDS rplM NC_008340.1 2544274 2544702 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(2544274..2544702) Alkalilimnicola ehrlichii MLHE-1 4270275 YP_743075.1 CDS Mlg_2243 NC_008340.1 2545018 2545329 R KEGG: bpm:BURPS1710b_0617 ferredoxin, 2Fe-2S; (2Fe-2S) ferredoxin complement(2545018..2545329) Alkalilimnicola ehrlichii MLHE-1 4270276 YP_743076.1 CDS Mlg_2244 NC_008340.1 2545337 2546158 R S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase complement(2545337..2546158) Alkalilimnicola ehrlichii MLHE-1 4270277 YP_743077.1 CDS Mlg_2245 NC_008340.1 2546280 2546690 R PFAM: OsmC family protein; KEGG: nmu:Nmul_A0342 OsmC-like protein; OsmC family protein complement(2546280..2546690) Alkalilimnicola ehrlichii MLHE-1 4270278 YP_743078.1 CDS Mlg_2246 NC_008340.1 2546853 2547509 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 2546853..2547509 Alkalilimnicola ehrlichii MLHE-1 4270279 YP_743079.1 CDS Mlg_2247 NC_008340.1 2547540 2548343 R PFAM: Indole-3-glycerol phosphate synthase; KEGG: mca:MCA2587 indole-3-glycerol phosphate synthase; indole-3-glycerol phosphate synthase complement(2547540..2548343) Alkalilimnicola ehrlichii MLHE-1 4270280 YP_743080.1 CDS Mlg_2248 NC_008340.1 2548346 2549362 R TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase, family 3; KEGG: noc:Noc_2496 anthranilate phosphoribosyl transferase; anthranilate phosphoribosyltransferase complement(2548346..2549362) Alkalilimnicola ehrlichii MLHE-1 4269189 YP_743081.1 CDS Mlg_2249 NC_008340.1 2549368 2549946 R TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: pae:PA0649 anthranilate synthase component II; anthranilate synthase, component II complement(2549368..2549946) Alkalilimnicola ehrlichii MLHE-1 4269190 YP_743082.1 CDS Mlg_2250 NC_008340.1 2549950 2551458 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(2549950..2551458) Alkalilimnicola ehrlichii MLHE-1 4269191 YP_743083.1 CDS Mlg_2251 NC_008340.1 2551573 2552262 R TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: csa:Csal_2324 phosphoglycolate phosphatase; phosphoglycolate phosphatase complement(2551573..2552262) Alkalilimnicola ehrlichii MLHE-1 4269192 YP_743084.1 CDS Mlg_2252 NC_008340.1 2552371 2553171 R PFAM: heat shock protein DnaJ domain protein; KEGG: pfl:PFL_5643 DnaJ-like protein DjlA; heat shock protein DnaJ domain-containing protein complement(2552371..2553171) Alkalilimnicola ehrlichii MLHE-1 4269193 YP_743085.1 CDS Mlg_2253 NC_008340.1 2553300 2554655 D PFAM: amine oxidase; KEGG: bur:Bcep18194_C6583 FAD dependent oxidoreductase; amine oxidase 2553300..2554655 Alkalilimnicola ehrlichii MLHE-1 4269194 YP_743086.1 CDS Mlg_2254 NC_008340.1 2554652 2555905 D PFAM: RNA methylase; Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: mlo:mll0368 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 2554652..2555905 Alkalilimnicola ehrlichii MLHE-1 4269195 YP_743087.1 CDS Mlg_2255 NC_008340.1 2555899 2556807 D PFAM: regulatory protein, MerR; KEGG: csa:Csal_0466 transcriptional regulator, MerR family; MerR family transcriptional regulator 2555899..2556807 Alkalilimnicola ehrlichii MLHE-1 4269196 YP_743088.1 CDS Mlg_2256 NC_008340.1 2556825 2558264 D PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; KEGG: rru:Rru_A2903 deoxyribodipyrimidine photolyase; deoxyribodipyrimidine photo-lyase type I 2556825..2558264 Alkalilimnicola ehrlichii MLHE-1 4269197 YP_743089.1 CDS Mlg_2257 NC_008340.1 2558363 2559256 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase 2558363..2559256 Alkalilimnicola ehrlichii MLHE-1 4269198 YP_743090.1 CDS Mlg_2258 NC_008340.1 2559282 2559458 D hypothetical protein 2559282..2559458 Alkalilimnicola ehrlichii MLHE-1 4269199 YP_743091.1 CDS Mlg_2259 NC_008340.1 2559751 2560599 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bbr:BB4132 enzyme; 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(2559751..2560599) Alkalilimnicola ehrlichii MLHE-1 4269200 YP_743092.1 CDS Mlg_2260 NC_008340.1 2560634 2561647 R KEGG: bte:BTH_I1196 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase complement(2560634..2561647) Alkalilimnicola ehrlichii MLHE-1 4269201 YP_743093.1 CDS Mlg_2261 NC_008340.1 2561840 2563840 R KEGG: noc:Noc_2808 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; transketolase complement(2561840..2563840) Alkalilimnicola ehrlichii MLHE-1 4269202 YP_743094.1 CDS Mlg_2262 NC_008340.1 2564035 2565192 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 2564035..2565192 Alkalilimnicola ehrlichii MLHE-1 4269203 YP_743095.1 CDS Mlg_2263 NC_008340.1 2565310 2566722 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 2565310..2566722 Alkalilimnicola ehrlichii MLHE-1 4269204 YP_743096.1 CDS Mlg_2264 NC_008340.1 2567554 2568423 D KEGG: nmu:Nmul_A2539 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 2567554..2568423 Alkalilimnicola ehrlichii MLHE-1 4269205 YP_743097.1 CDS Mlg_2265 NC_008340.1 2568474 2568959 D PFAM: protein of unknown function DUF785; KEGG: cbu:CBU_1601 hypothetical protein; hypothetical protein 2568474..2568959 Alkalilimnicola ehrlichii MLHE-1 4268228 YP_743098.1 CDS Mlg_2266 NC_008340.1 2568974 2569891 D TIGRFAM: alpha-L-glutamate ligases, RimK family; PFAM: protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: hch:HCH_00778 glutathione synthase/ribosomal protein S6 modification enzyme (glutaminyl transferase); 30S ribosomal protein S6 2568974..2569891 Alkalilimnicola ehrlichii MLHE-1 4268229 YP_743099.1 CDS Mlg_2267 NC_008340.1 2569936 2571192 R hypothetical protein complement(2569936..2571192) Alkalilimnicola ehrlichii MLHE-1 4268230 YP_743100.1 CDS Mlg_2268 NC_008340.1 2571537 2572187 R Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T complement(2571537..2572187) Alkalilimnicola ehrlichii MLHE-1 4268231 YP_743101.1 CDS Mlg_2269 NC_008340.1 2572751 2574349 R PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: mag:amb4386 ABC-type uncharacterized transport system, duplicated ATPase component; ABC transporter-like protein complement(2572751..2574349) Alkalilimnicola ehrlichii MLHE-1 4268232 YP_743102.1 CDS Mlg_2270 NC_008340.1 2574346 2575419 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA1808 peptide transport system permease; binding-protein-dependent transport systems inner membrane component complement(2574346..2575419) Alkalilimnicola ehrlichii MLHE-1 4268233 YP_743103.1 CDS Mlg_2271 NC_008340.1 2575419 2576510 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nwi:Nwi_0290 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(2575419..2576510) Alkalilimnicola ehrlichii MLHE-1 4268234 YP_743104.1 CDS Mlg_2272 NC_008340.1 2576535 2576744 R PFAM: protein of unknown function UPF0150; KEGG: rpb:RPB_4320 protein of unknown function UPF0150; hypothetical protein complement(2576535..2576744) Alkalilimnicola ehrlichii MLHE-1 4268235 YP_743105.1 CDS Mlg_2273 NC_008340.1 2576751 2576936 R PFAM: YcfA family protein; KEGG: mac:MA2135 hypothetical protein; hypothetical protein complement(2576751..2576936) Alkalilimnicola ehrlichii MLHE-1 4268236 YP_743106.1 CDS Mlg_2274 NC_008340.1 2577009 2578811 R PFAM: extracellular solute-binding protein, family 5; KEGG: mag:amb4389 ABC-type oligopeptide transport system, periplasmic component; extracellular solute-binding protein complement(2577009..2578811) Alkalilimnicola ehrlichii MLHE-1 4268237 YP_743107.1 CDS Mlg_2275 NC_008340.1 2578933 2579430 R KEGG: tcx:Tcr_1885 hypothetical protein; hypothetical protein complement(2578933..2579430) Alkalilimnicola ehrlichii MLHE-1 4268238 YP_743108.1 CDS Mlg_2276 NC_008340.1 2579486 2581741 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: wsu:WS1425 outer membrane receptor for iron-regulated colicin I receptor, porin, requires TonB gene product colicin I receptor; TonB-dependent receptor complement(2579486..2581741) Alkalilimnicola ehrlichii MLHE-1 4268239 YP_743109.1 CDS Mlg_2277 NC_008340.1 2582002 2582793 D [NADH]; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA1263 enoyl-(acyl-carrier-protein) reductase; enoyl-ACP reductase 2582002..2582793 Alkalilimnicola ehrlichii MLHE-1 4268240 YP_743110.1 CDS Mlg_2278 NC_008340.1 2582847 2583245 R KEGG: ftl:FTL_0105 hypothetical membrane protein; hypothetical protein complement(2582847..2583245) Alkalilimnicola ehrlichii MLHE-1 4268241 YP_743111.1 CDS Mlg_2279 NC_008340.1 2583422 2585257 R TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: bha:BH1831 L-lactate permease; L-lactate transport complement(2583422..2585257) Alkalilimnicola ehrlichii MLHE-1 4268242 YP_743112.1 CDS Mlg_2280 NC_008340.1 2585388 2586047 R PFAM: protein of unknown function DUF162; KEGG: dar:Daro_0673 protein of unknown function DUF162; hypothetical protein complement(2585388..2586047) Alkalilimnicola ehrlichii MLHE-1 4268243 YP_743113.1 CDS Mlg_2281 NC_008340.1 2586040 2587470 R TIGRFAM: iron-sulfur cluster binding protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: eba:ebA3917 iron-sulfur binding protein; iron-sulfur cluster binding protein complement(2586040..2587470) Alkalilimnicola ehrlichii MLHE-1 4268244 YP_743114.1 CDS Mlg_2282 NC_008340.1 2587470 2588252 R PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: eba:ebA3918 predicted Fe-S oxidoreductase; hypothetical protein complement(2587470..2588252) Alkalilimnicola ehrlichii MLHE-1 4268245 YP_743115.1 CDS Mlg_2283 NC_008340.1 2588519 2589286 D PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: csa:Csal_0403 GntR-like protein; GntR family transcriptional regulator 2588519..2589286 Alkalilimnicola ehrlichii MLHE-1 4268378 YP_743116.1 CDS Mlg_2284 NC_008340.1 2589696 2591150 R KEGG: cbu:CBU_1451 peptidyl-prolyl cis-trans isomerse D - related protein; hypothetical protein complement(2589696..2591150) Alkalilimnicola ehrlichii MLHE-1 4268379 YP_743117.1 CDS Mlg_2285 NC_008340.1 2591450 2591722 R PFAM: histone family protein DNA-binding protein; KEGG: hch:HCH_02163 bacterial nucleoid DNA-binding protein; histone family protein DNA-binding protein complement(2591450..2591722) Alkalilimnicola ehrlichii MLHE-1 4268382 YP_743118.1 CDS Mlg_2286 NC_008340.1 2591990 2594440 R KEGG: mca:MCA0531 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Lon-A peptidase complement(2591990..2594440) Alkalilimnicola ehrlichii MLHE-1 4268383 YP_743119.1 CDS clpX NC_008340.1 2595034 2596311 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(2595034..2596311) Alkalilimnicola ehrlichii MLHE-1 4268384 YP_743120.1 CDS clpP NC_008340.1 2596514 2597158 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(2596514..2597158) Alkalilimnicola ehrlichii MLHE-1 4268385 YP_743121.1 CDS tig NC_008340.1 2597165 2598517 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(2597165..2598517) Alkalilimnicola ehrlichii MLHE-1 4268386 YP_743122.1 CDS Mlg_2290 NC_008340.1 2598754 2599512 D PFAM: protein of unknown function DUF218; KEGG: eca:ECA2551 hypothetical protein; hypothetical protein 2598754..2599512 Alkalilimnicola ehrlichii MLHE-1 4268388 YP_743123.1 CDS Mlg_2291 NC_008340.1 2600265 2600552 R PFAM: Excinuclease ABC, C subunit domain protein; KEGG: nha:Nham_0101 excinuclease ABC, C subunit-like; excinuclease ABC subunit C complement(2600265..2600552) Alkalilimnicola ehrlichii MLHE-1 4268389 YP_743124.1 CDS Mlg_2292 NC_008340.1 2600586 2601335 R KEGG: tfu:Tfu_1919 conserved hypothetical protein; hypothetical protein complement(2600586..2601335) Alkalilimnicola ehrlichii MLHE-1 4268390 YP_743125.1 CDS Mlg_2293 NC_008340.1 2601815 2603002 R KEGG: sat:SYN_01816 hypothetical cytosolic protein; hypothetical protein complement(2601815..2603002) Alkalilimnicola ehrlichii MLHE-1 4268391 YP_743126.1 CDS Mlg_2294 NC_008340.1 2602999 2606376 R KEGG: pca:Pcar_1809 hypothetical protein; hypothetical protein complement(2602999..2606376) Alkalilimnicola ehrlichii MLHE-1 4268392 YP_743127.1 CDS Mlg_2295 NC_008340.1 2606394 2606993 R KEGG: sat:SYN_01818 hypothetical cytosolic protein; hypothetical protein complement(2606394..2606993) Alkalilimnicola ehrlichii MLHE-1 4268393 YP_743128.1 CDS Mlg_2296 NC_008340.1 2606998 2608434 R KEGG: sat:SYN_01819 hypothetical cytosolic protein; hypothetical protein complement(2606998..2608434) Alkalilimnicola ehrlichii MLHE-1 4268394 YP_743129.1 CDS Mlg_2297 NC_008340.1 2608491 2609039 D hypothetical protein 2608491..2609039 Alkalilimnicola ehrlichii MLHE-1 4268395 YP_743130.1 CDS Mlg_2298 NC_008340.1 2609445 2610575 D PFAM: AAA-4 family protein; KEGG: cch:Cag_1221 transcriptional regulator; transcriptional regulator 2609445..2610575 Alkalilimnicola ehrlichii MLHE-1 4268396 YP_743131.1 CDS Mlg_2299 NC_008340.1 2610572 2611543 D PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: fra:Francci3_4507 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 2610572..2611543 Alkalilimnicola ehrlichii MLHE-1 4268397 YP_743132.1 CDS Mlg_2300 NC_008340.1 2612295 2612546 D PFAM: helix-turn-helix domain protein; KEGG: rru:Rru_A2442 transcriptional regulator, XRE family; XRE family transcriptional regulator 2612295..2612546 Alkalilimnicola ehrlichii MLHE-1 4268398 YP_743133.1 CDS Mlg_2301 NC_008340.1 2612546 2613859 D PFAM: HipA domain protein; KEGG: rru:Rru_A2443 HipA protein; HipA domain-containing protein 2612546..2613859 Alkalilimnicola ehrlichii MLHE-1 4268399 YP_743134.1 CDS Mlg_2302 NC_008340.1 2614438 2615559 D hypothetical protein 2614438..2615559 Alkalilimnicola ehrlichii MLHE-1 4268400 YP_743135.1 CDS Mlg_2305 NC_008340.1 2616556 2616852 D hypothetical protein 2616556..2616852 Alkalilimnicola ehrlichii MLHE-1 4268403 YP_743136.1 CDS Mlg_2306 NC_008340.1 2616849 2617250 D KEGG: chy:CHY_1722 PIN domain protein; twitching motility protein PilT 2616849..2617250 Alkalilimnicola ehrlichii MLHE-1 4268404 YP_743137.1 CDS Mlg_2307 NC_008340.1 2618091 2618705 D KEGG: sat:SYN_00015 transcriptional regulator with HTH domain; hypothetical protein 2618091..2618705 Alkalilimnicola ehrlichii MLHE-1 4268405 YP_743138.1 CDS Mlg_2308 NC_008340.1 2618702 2619139 D hypothetical protein 2618702..2619139 Alkalilimnicola ehrlichii MLHE-1 4268406 YP_743139.1 CDS Mlg_2309 NC_008340.1 2619747 2619953 D KEGG: rru:Rru_A1247 transcriptional regulator, XRE family; XRE family transcriptional regulator 2619747..2619953 Alkalilimnicola ehrlichii MLHE-1 4268407 YP_743140.1 CDS Mlg_2310 NC_008340.1 2619943 2620185 D KEGG: noc:Noc_2931 hypothetical protein; hypothetical protein 2619943..2620185 Alkalilimnicola ehrlichii MLHE-1 4268408 YP_743141.1 CDS Mlg_2311 NC_008340.1 2620335 2620766 D KEGG: plt:Plut_0831 hypothetical protein; hypothetical protein 2620335..2620766 Alkalilimnicola ehrlichii MLHE-1 4268409 YP_743142.1 CDS Mlg_2312 NC_008340.1 2620763 2622097 D KEGG: plt:Plut_0830 hypothetical protein; hypothetical protein 2620763..2622097 Alkalilimnicola ehrlichii MLHE-1 4270567 YP_743143.1 CDS Mlg_2313 NC_008340.1 2622649 2624031 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: sde:Sde_2114 chorismate mutase, gamma, beta and epsilon; RNA-metabolising metallo-beta-lactamase 2622649..2624031 Alkalilimnicola ehrlichii MLHE-1 4270568 YP_743144.1 CDS Mlg_2314 NC_008340.1 2624658 2625788 D KEGG: dps:DPPB61 hypothetical protein; hypothetical protein 2624658..2625788 Alkalilimnicola ehrlichii MLHE-1 4270569 YP_743145.1 CDS Mlg_2315 NC_008340.1 2625764 2626354 D KEGG: mhu:Mhun_1079 hypothetical protein; hypothetical protein 2625764..2626354 Alkalilimnicola ehrlichii MLHE-1 4270570 YP_743146.1 CDS Mlg_2316 NC_008340.1 2626579 2626956 D PFAM: regulatory protein, MarR; KEGG: lic:LIC12206 transcriptional regulator (MarR family); AsnC family transcriptional regulator 2626579..2626956 Alkalilimnicola ehrlichii MLHE-1 4270571 YP_743147.1 CDS Mlg_2317 NC_008340.1 2627020 2628123 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pfo:Pfl_4058 dTDP-glucose 4,6-dehydratase; dTDP-glucose 4,6-dehydratase 2627020..2628123 Alkalilimnicola ehrlichii MLHE-1 4270572 YP_743148.1 CDS Mlg_2318 NC_008340.1 2628120 2629040 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pol:Bpro_4021 dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 2628120..2629040 Alkalilimnicola ehrlichii MLHE-1 4270573 YP_743149.1 CDS Mlg_2319 NC_008340.1 2629040 2629921 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: pol:Bpro_4018 glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylyltransferase 2629040..2629921 Alkalilimnicola ehrlichii MLHE-1 4270574 YP_743150.1 CDS Mlg_2320 NC_008340.1 2629943 2630491 D KEGG: eba:ebA2275 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 2629943..2630491 Alkalilimnicola ehrlichii MLHE-1 4270575 YP_743151.1 CDS Mlg_2321 NC_008340.1 2630746 2632623 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ilo:IL0540 ABC-type multidrug transport system, ATPase and permease components; ABC transporter-like protein 2630746..2632623 Alkalilimnicola ehrlichii MLHE-1 4270576 YP_743152.1 CDS Mlg_2322 NC_008340.1 2632647 2633645 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: par:Psyc_0653 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 2632647..2633645 Alkalilimnicola ehrlichii MLHE-1 4270577 YP_743153.1 CDS Mlg_2323 NC_008340.1 2633645 2634805 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: par:Psyc_0654 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 2633645..2634805 Alkalilimnicola ehrlichii MLHE-1 4270578 YP_743154.1 CDS Mlg_2324 NC_008340.1 2634802 2635512 D PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; acylneuraminate cytidylyltransferase; KEGG: par:Psyc_0656 acylneuraminate cytidylyltransferase; acylneuraminate cytidylyltransferase 2634802..2635512 Alkalilimnicola ehrlichii MLHE-1 4270579 YP_743155.1 CDS Mlg_2325 NC_008340.1 2635515 2636714 D KEGG: par:Psyc_0657 probable polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 2635515..2636714 Alkalilimnicola ehrlichii MLHE-1 4270580 YP_743156.1 CDS Mlg_2326 NC_008340.1 2636800 2637237 D PFAM: GCN5-related N-acetyltransferase; KEGG: sdn:Sden_1284 MaoC-like dehydratase; GCN5-like N-acetyltransferase 2636800..2637237 Alkalilimnicola ehrlichii MLHE-1 4270581 YP_743157.1 CDS Mlg_2327 NC_008340.1 2637234 2638286 D PFAM: N-acetylneuraminic acid synthase, N-terminal domain; KEGG: cps:CPS_2097 NeuB protein; N-acetylneuraminate synthase 2637234..2638286 Alkalilimnicola ehrlichii MLHE-1 4270582 YP_743158.1 CDS Mlg_2328 NC_008340.1 2638471 2639400 D PFAM: sulfotransferase; KEGG: sru:SRU_1002 sulfotransferase domain superfamily; sulfotransferase 2638471..2639400 Alkalilimnicola ehrlichii MLHE-1 4270583 YP_743159.1 CDS Mlg_2329 NC_008340.1 2639600 2640658 R PFAM: Integrase, catalytic region; KEGG: dsy:DSY4578 hypothetical protein; integrase catalytic subunit complement(2639600..2640658) Alkalilimnicola ehrlichii MLHE-1 4269085 YP_743160.1 CDS Mlg_2330 NC_008340.1 2640655 2641146 R KEGG: sdn:Sden_2169 hypothetical protein; hypothetical protein complement(2640655..2641146) Alkalilimnicola ehrlichii MLHE-1 4269086 YP_743161.1 CDS Mlg_2331 NC_008340.1 2641267 2642637 D KEGG: neu:NE1571 hypothetical protein; hypothetical protein 2641267..2642637 Alkalilimnicola ehrlichii MLHE-1 4269087 YP_743162.1 CDS Mlg_2332 NC_008340.1 2642829 2643956 D PFAM: glycosyl transferase, group 1; KEGG: csa:Csal_1715 glycosyl transferase, group 1; group 1 glycosyl transferase 2642829..2643956 Alkalilimnicola ehrlichii MLHE-1 4269088 YP_743163.1 CDS Mlg_2333 NC_008340.1 2644053 2644388 D KEGG: sdn:Sden_2169 hypothetical protein; hypothetical protein 2644053..2644388 Alkalilimnicola ehrlichii MLHE-1 4269089 YP_743164.1 CDS Mlg_2334 NC_008340.1 2644456 2646027 D PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22); integrase catalytic subunit 2644456..2646027 Alkalilimnicola ehrlichii MLHE-1 4269090 YP_743165.1 CDS Mlg_2335 NC_008340.1 2646014 2646160 D hypothetical protein 2646014..2646160 Alkalilimnicola ehrlichii MLHE-1 4269091 YP_743166.1 CDS Mlg_2336 NC_008340.1 2646220 2646711 D KEGG: sdn:Sden_2169 hypothetical protein; hypothetical protein 2646220..2646711 Alkalilimnicola ehrlichii MLHE-1 4269092 YP_743167.1 CDS Mlg_2337 NC_008340.1 2646708 2647772 D PFAM: Integrase, catalytic region; KEGG: dsy:DSY4578 hypothetical protein; integrase catalytic subunit 2646708..2647772 Alkalilimnicola ehrlichii MLHE-1 4269093 YP_743168.1 CDS Mlg_2338 NC_008340.1 2647964 2649043 D PFAM: glycosyl transferase, group 1; KEGG: par:Psyc_0667 probable glycosyl transferase, group 1; group 1 glycosyl transferase 2647964..2649043 Alkalilimnicola ehrlichii MLHE-1 4269094 YP_743169.1 CDS Mlg_2339 NC_008340.1 2649043 2650962 D KEGG: reu:Reut_B5373 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; asparagine synthase 2649043..2650962 Alkalilimnicola ehrlichii MLHE-1 4269095 YP_743170.1 CDS Mlg_2340 NC_008340.1 2650964 2652004 D KEGG: tel:tll1203 unknown protein; hypothetical protein 2650964..2652004 Alkalilimnicola ehrlichii MLHE-1 4269096 YP_743171.1 CDS Mlg_2341 NC_008340.1 2652074 2653213 D PFAM: glycosyl transferase, group 1; KEGG: csa:Csal_1721 glycosyl transferase, group 1; group 1 glycosyl transferase 2652074..2653213 Alkalilimnicola ehrlichii MLHE-1 4269097 YP_743172.1 CDS Mlg_2342 NC_008340.1 2653230 2654645 R PFAM: glycosyl transferase, family 4; KEGG: bbr:BB0875 probable glycosyltransferase; glycosyl transferase complement(2653230..2654645) Alkalilimnicola ehrlichii MLHE-1 4269098 YP_743173.1 CDS Mlg_2343 NC_008340.1 2655371 2656180 D TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: csa:Csal_1672 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 2655371..2656180 Alkalilimnicola ehrlichii MLHE-1 4269099 YP_743174.1 CDS Mlg_2344 NC_008340.1 2656205 2657113 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 2656205..2657113 Alkalilimnicola ehrlichii MLHE-1 4269100 YP_743175.1 CDS Mlg_2345 NC_008340.1 2657116 2659032 D KEGG: csa:Csal_1687 sulfate adenylyltransferase, large subunit; TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; adenylylsulfate kinase; elongation factor Tu, domain 2 protein; sulfate adenylyltransferase subunit 1/adenylylsulfate kinase 2657116..2659032 Alkalilimnicola ehrlichii MLHE-1 4269101 YP_743176.1 CDS Mlg_2346 NC_008340.1 2659069 2660226 D KEGG: mhu:Mhun_0414 ATPase (AAA+ superfamily)-like; AAA family ATPase 2659069..2660226 Alkalilimnicola ehrlichii MLHE-1 4269102 YP_743177.1 CDS Mlg_2347 NC_008340.1 2660335 2662101 D PFAM: Citrate transporter; TrkA-C domain protein; KEGG: noc:Noc_1175 TrkA-C, di- and tricarboxylate transporters; TrkA domain-containing protein 2660335..2662101 Alkalilimnicola ehrlichii MLHE-1 4268445 YP_743178.1 CDS Mlg_2348 NC_008340.1 2662734 2664272 R KEGG: hch:HCH_02378 hypothetical protein; hypothetical protein complement(2662734..2664272) Alkalilimnicola ehrlichii MLHE-1 4268446 YP_743179.1 CDS Mlg_2349 NC_008340.1 2664464 2665447 D PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: ppr:PBPRA1875 hypothetical D-alanyl-D-alanine endopeptidase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 2664464..2665447 Alkalilimnicola ehrlichii MLHE-1 4268447 YP_743180.1 CDS Mlg_2350 NC_008340.1 2665484 2666752 R PFAM: glycosyl transferase, group 1; KEGG: eba:ebA4292 conserved hypothetical protein, possibly glycosyltransferase; group 1 glycosyl transferase complement(2665484..2666752) Alkalilimnicola ehrlichii MLHE-1 4268448 YP_743181.1 CDS Mlg_2351 NC_008340.1 2666742 2667872 R KEGG: xcb:XC_3634 glycosyltransferase; hypothetical protein complement(2666742..2667872) Alkalilimnicola ehrlichii MLHE-1 4268449 YP_743182.1 CDS Mlg_2352 NC_008340.1 2667882 2668835 R PFAM: glycosyl transferase, family 2; KEGG: ret:RHE_CH03223 glycosyltransferase; glycosyl transferase complement(2667882..2668835) Alkalilimnicola ehrlichii MLHE-1 4268450 YP_743183.1 CDS Mlg_2353 NC_008340.1 2668832 2669590 R PFAM: glycosyl transferase, family 2; KEGG: bha:BH3661 teichuronic acid biosynthesis; glycosyl transferase complement(2668832..2669590) Alkalilimnicola ehrlichii MLHE-1 4268451 YP_743184.1 CDS Mlg_2354 NC_008340.1 2669672 2670565 D PFAM: glycosyl transferase, family 2; KEGG: nha:Nham_3045 glycosyl transferase, family 2; glycosyl transferase 2669672..2670565 Alkalilimnicola ehrlichii MLHE-1 4268452 YP_743185.1 CDS Mlg_2355 NC_008340.1 2670639 2672450 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sru:SRU_0598 ABC transporter, multidrug efflux family; ABC transporter-like protein 2670639..2672450 Alkalilimnicola ehrlichii MLHE-1 4268453 YP_743186.1 CDS Mlg_2356 NC_008340.1 2672454 2673449 D hypothetical protein 2672454..2673449 Alkalilimnicola ehrlichii MLHE-1 4268454 YP_743187.1 CDS Mlg_2357 NC_008340.1 2673497 2674897 D PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mta:Moth_0582 oxygen-independent coproporphyrinogen III oxidase; coproporphyrinogen III oxidase, anaerobic 2673497..2674897 Alkalilimnicola ehrlichii MLHE-1 4268455 YP_743188.1 CDS Mlg_2358 NC_008340.1 2674854 2676044 R KEGG: ret:RHE_PE00036 glycosyltransferase; glycosyltransferase complement(2674854..2676044) Alkalilimnicola ehrlichii MLHE-1 4268456 YP_743189.1 CDS Mlg_2359 NC_008340.1 2676055 2677287 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: rpa:RPA0983 possible phthalate dioxygenase; Rieske (2Fe-2S) domain-containing protein complement(2676055..2677287) Alkalilimnicola ehrlichii MLHE-1 4268457 YP_743190.1 CDS Mlg_2360 NC_008340.1 2677284 2678027 R KEGG: pmt:PMT0107 hypothetical protein; hypothetical protein complement(2677284..2678027) Alkalilimnicola ehrlichii MLHE-1 4268458 YP_743191.1 CDS Mlg_2361 NC_008340.1 2678137 2680188 R PFAM: isochorismatase hydrolase; aldehyde dehydrogenase; KEGG: bbr:BB0641 aldehyde dehydrogenase; aldehyde dehydrogenase complement(2678137..2680188) Alkalilimnicola ehrlichii MLHE-1 4268459 YP_743192.1 CDS Mlg_2362 NC_008340.1 2680191 2681339 R PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: gvi:gll3551 3-isopropylmalate dehydrogenase; isocitrate/isopropylmalate dehydrogenase complement(2680191..2681339) Alkalilimnicola ehrlichii MLHE-1 4268460 YP_743193.1 CDS Mlg_2363 NC_008340.1 2681475 2682446 R hypothetical protein complement(2681475..2682446) Alkalilimnicola ehrlichii MLHE-1 4268461 YP_743194.1 CDS Mlg_2364 NC_008340.1 2682443 2683438 R KEGG: bur:Bcep18194_B1165 hypothetical protein; hypothetical protein complement(2682443..2683438) Alkalilimnicola ehrlichii MLHE-1 4270703 YP_743195.1 CDS Mlg_2365 NC_008340.1 2683824 2685023 D PFAM: glycosyl transferase, group 1; KEGG: atc:AGR_L_2541 hypothetical protein; group 1 glycosyl transferase 2683824..2685023 Alkalilimnicola ehrlichii MLHE-1 4270704 YP_743196.1 CDS Mlg_2366 NC_008340.1 2685030 2685737 D PFAM: acylneuraminate cytidylyltransferase; KEGG: pmt:PMT0102 surface polysaccharide biosynthesis protein, possible cytidylyltransferase; acylneuraminate cytidylyltransferase 2685030..2685737 Alkalilimnicola ehrlichii MLHE-1 4270705 YP_743197.1 CDS Mlg_2367 NC_008340.1 2685730 2687049 D hypothetical protein 2685730..2687049 Alkalilimnicola ehrlichii MLHE-1 4270706 YP_743198.1 CDS Mlg_2368 NC_008340.1 2687042 2688079 D KEGG: dvu:DVU0351 cytidine 5'monophosphate N-acetylneuraminic acid synthetase, /polysaccharide biosynthesis protein; cytidine 5'monophosphate N-acetylneuraminic acid synthetase 2687042..2688079 Alkalilimnicola ehrlichii MLHE-1 4270707 YP_743199.1 CDS Mlg_2369 NC_008340.1 2688076 2689122 D PFAM: N-acetylneuraminic acid synthase, N-terminal domain; KEGG: hch:HCH_05266 sialic acid synthase; N-acetylneuraminate synthase 2688076..2689122 Alkalilimnicola ehrlichii MLHE-1 4270708 YP_743200.1 CDS Mlg_2370 NC_008340.1 2689132 2690253 R KEGG: cya:CYA_1816 tetratricopeptide repeat protein; capsular polysaccharide biosynthesis protein-like protein complement(2689132..2690253) Alkalilimnicola ehrlichii MLHE-1 4270709 YP_743201.1 CDS Mlg_2371 NC_008340.1 2690255 2691061 R hypothetical protein complement(2690255..2691061) Alkalilimnicola ehrlichii MLHE-1 4270710 YP_743202.1 CDS Mlg_2372 NC_008340.1 2691163 2693766 R hypothetical protein complement(2691163..2693766) Alkalilimnicola ehrlichii MLHE-1 4270711 YP_743203.1 CDS Mlg_2373 NC_008340.1 2694767 2695591 D TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; KEGG: csa:Csal_1672 3'(2'),5'-bisphosphate nucleotidase; 3'(2'),5'-bisphosphate nucleotidase 2694767..2695591 Alkalilimnicola ehrlichii MLHE-1 4270712 YP_743204.1 CDS Mlg_2374 NC_008340.1 2695699 2696424 D PFAM: GAF domain protein; KEGG: gme:Gmet_2614 GAF sensor protein; GAF sensor protein 2695699..2696424 Alkalilimnicola ehrlichii MLHE-1 4270713 YP_743205.1 CDS Mlg_2375 NC_008340.1 2696662 2696997 R hypothetical protein complement(2696662..2696997) Alkalilimnicola ehrlichii MLHE-1 4270714 YP_743206.1 CDS Mlg_2376 NC_008340.1 2697007 2698353 R hypothetical protein complement(2697007..2698353) Alkalilimnicola ehrlichii MLHE-1 4270715 YP_743207.1 CDS Mlg_2377 NC_008340.1 2698919 2700100 R TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: bur:Bcep18194_B2633 acetate kinase; acetate kinase complement(2698919..2700100) Alkalilimnicola ehrlichii MLHE-1 4270716 YP_743208.1 CDS Mlg_2378 NC_008340.1 2700892 2702301 R PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: rpa:RPA4567 phosphate acetyltransferase; bifunctional enoyl-CoA hydratase/phosphate acetyltransferase complement(2700892..2702301) Alkalilimnicola ehrlichii MLHE-1 4270717 YP_743209.1 CDS Mlg_2379 NC_008340.1 2702341 2703117 R [NADH]; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rpa:RPA4568 enoyl-acyl carrier protein reductase; enoyl-ACP reductase complement(2702341..2703117) Alkalilimnicola ehrlichii MLHE-1 4270718 YP_743210.1 CDS Mlg_2380 NC_008340.1 2703136 2704893 R PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: sil:SPO0112 poly(3-hydroxyalkanoate) polymerase; poly-beta-hydroxybutyrate polymerase domain-containing protein complement(2703136..2704893) Alkalilimnicola ehrlichii MLHE-1 4270719 YP_743211.1 CDS Mlg_2381 NC_008340.1 2704978 2705841 R PFAM: MscS Mechanosensitive ion channel; KEGG: sru:SRU_0808 transporter, small conductance mechanosensitive ion channel (MscS) family; mechanosensitive ion channel MscS complement(2704978..2705841) Alkalilimnicola ehrlichii MLHE-1 4270720 YP_743212.1 CDS Mlg_2382 NC_008340.1 2706512 2707330 R KEGG: sru:SRU_0809 hypothetical protein; hypothetical protein complement(2706512..2707330) Alkalilimnicola ehrlichii MLHE-1 4269379 YP_743213.1 CDS Mlg_2383 NC_008340.1 2707327 2708115 R PFAM: type II secretion system protein N; KEGG: son:SO0176 general secretion pathway protein N; type II secretion system protein N complement(2707327..2708115) Alkalilimnicola ehrlichii MLHE-1 4269380 YP_743214.1 CDS Mlg_2384 NC_008340.1 2708112 2708606 R PFAM: General secretion pathway M protein; KEGG: hch:HCH_03928 type II secretory pathway, component PulM; general secretion pathway M protein complement(2708112..2708606) Alkalilimnicola ehrlichii MLHE-1 4269381 YP_743215.1 CDS Mlg_2385 NC_008340.1 2708603 2709877 R TIGRFAM: general secretion pathway protein L; PFAM: General secretion pathway L; KEGG: ilo:IL2018 type II secretory pathway, component PulL; general secretion pathway protein L complement(2708603..2709877) Alkalilimnicola ehrlichii MLHE-1 4269382 YP_743216.1 CDS Mlg_2386 NC_008340.1 2709903 2710721 R PFAM: General secretion pathway protein K; KEGG: xcb:XC_0746 type II secretion system protein K; general secretion pathway protein K complement(2709903..2710721) Alkalilimnicola ehrlichii MLHE-1 4269383 YP_743217.1 CDS Mlg_2387 NC_008340.1 2710724 2712766 R PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: son:SO0867 serine protease, subtilase; peptidase S8/S53 subtilisin kexin sedolisin complement(2710724..2712766) Alkalilimnicola ehrlichii MLHE-1 4269384 YP_743218.1 CDS Mlg_2388 NC_008340.1 2712763 2713401 R TIGRFAM: general secretion pathway protein J; KEGG: pae:PA3098 general secretion pathway protein J; general secretion pathway protein J complement(2712763..2713401) Alkalilimnicola ehrlichii MLHE-1 4269385 YP_743219.1 CDS Mlg_2389 NC_008340.1 2713391 2713840 R TIGRFAM: general secretion pathway protein I; PFAM: type II secretion system protein I/J; KEGG: cvi:CV3809 general secretion pathway protein I; general secretion pathway protein I complement(2713391..2713840) Alkalilimnicola ehrlichii MLHE-1 4269386 YP_743220.1 CDS Mlg_2390 NC_008340.1 2713833 2714375 R TIGRFAM: general secretion pathway protein H; Prepilin-type cleavage/methylation-like; KEGG: sdn:Sden_0125 general secretion pathway protein H; general secretion pathway protein H complement(2713833..2714375) Alkalilimnicola ehrlichii MLHE-1 4269387 YP_743221.1 CDS Mlg_2391 NC_008340.1 2714382 2714816 R TIGRFAM: general secretion pathway protein G; PFAM: II secretion system protein G; KEGG: cvi:CV3811 general secretion pathway protein G; general secretion pathway protein G complement(2714382..2714816) Alkalilimnicola ehrlichii MLHE-1 4269388 YP_743222.1 CDS Mlg_2392 NC_008340.1 2714886 2716100 R TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: son:SO0168 general secretion pathway protein F; general secretion pathway protein F complement(2714886..2716100) Alkalilimnicola ehrlichii MLHE-1 4269389 YP_743223.1 CDS Mlg_2393 NC_008340.1 2716259 2716738 D PFAM: Abortive infection protein; KEGG: pcu:pc0718 hypothetical protein; abortive infection protein 2716259..2716738 Alkalilimnicola ehrlichii MLHE-1 4269390 YP_743224.1 CDS Mlg_2394 NC_008340.1 2716823 2719741 R PFAM: von Willebrand factor, type A; KEGG: mma:MM2478 chloride channel; von Willebrand factor, type A complement(2716823..2719741) Alkalilimnicola ehrlichii MLHE-1 4269391 YP_743225.1 CDS Mlg_2395 NC_008340.1 2719824 2720627 R hypothetical protein complement(2719824..2720627) Alkalilimnicola ehrlichii MLHE-1 4269392 YP_743226.1 CDS Mlg_2396 NC_008340.1 2720826 2722676 R KEGG: noc:Noc_0277 possible streptogramin lyase, gluconolactonase; hypothetical protein complement(2720826..2722676) Alkalilimnicola ehrlichii MLHE-1 4269393 YP_743227.1 CDS Mlg_2397 NC_008340.1 2722741 2723799 R PFAM: WD40 domain protein beta Propeller; KEGG: gsu:GSU0025 tolB protein; WD40 domain-containing protein complement(2722741..2723799) Alkalilimnicola ehrlichii MLHE-1 4269394 YP_743228.1 CDS Mlg_2398 NC_008340.1 2723792 2724118 R hypothetical protein complement(2723792..2724118) Alkalilimnicola ehrlichii MLHE-1 4269395 YP_743229.1 CDS Mlg_2399 NC_008340.1 2724552 2726099 R KEGG: pae:PA3103 general secretion pathway protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; general secretory pathway protein E complement(2724552..2726099) Alkalilimnicola ehrlichii MLHE-1 4269986 YP_743230.1 CDS Mlg_2400 NC_008340.1 2726255 2728150 D hypothetical protein 2726255..2728150 Alkalilimnicola ehrlichii MLHE-1 4269987 YP_743231.1 CDS Mlg_2401 NC_008340.1 2728254 2730275 R TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: sde:Sde_3580 helix-turn-helix, AraC type; general secretion pathway protein D complement(2728254..2730275) Alkalilimnicola ehrlichii MLHE-1 4269988 YP_743232.1 CDS Mlg_2402 NC_008340.1 2730272 2731258 R TIGRFAM: general secretion pathway protein C; KEGG: son:SO0165 general secretion pathway protein C; general secretion pathway protein C complement(2730272..2731258) Alkalilimnicola ehrlichii MLHE-1 4269989 YP_743233.1 CDS Mlg_2403 NC_008340.1 2731396 2732133 D KEGG: ppu:PP0622 competence lipoprotein ComL; DNA uptake lipoprotein-like protein 2731396..2732133 Alkalilimnicola ehrlichii MLHE-1 4269990 YP_743234.1 CDS Mlg_2404 NC_008340.1 2732130 2733035 R PFAM: alpha/beta hydrolase fold; KEGG: rme:Rmet_0084 alpha/beta hydrolase fold; alpha/beta hydrolase complement(2732130..2733035) Alkalilimnicola ehrlichii MLHE-1 4269991 YP_743235.1 CDS Mlg_2405 NC_008340.1 2733062 2734270 D PFAM: regulatory protein, LuxR; KEGG: ppr:PBPRB1591 hypothetical protein; LuxR family transcriptional regulator 2733062..2734270 Alkalilimnicola ehrlichii MLHE-1 4269992 YP_743236.1 CDS Mlg_2406 NC_008340.1 2734410 2736473 D hypothetical protein 2734410..2736473 Alkalilimnicola ehrlichii MLHE-1 4269993 YP_743237.1 CDS Mlg_2407 NC_008340.1 2736549 2739029 R PFAM: protein of unknown function DUF214; KEGG: bbr:BB3420 inner membrane transport permease; hypothetical protein complement(2736549..2739029) Alkalilimnicola ehrlichii MLHE-1 4269994 YP_743238.1 CDS Mlg_2408 NC_008340.1 2739026 2739685 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pfo:Pfl_4015 ABC transporter-like; ABC transporter-like protein complement(2739026..2739685) Alkalilimnicola ehrlichii MLHE-1 4269995 YP_743239.1 CDS Mlg_2409 NC_008340.1 2739759 2740373 D PFAM: lipolytic enzyme, G-D-S-L family; KEGG: noc:Noc_0429 arylesterase; arylesterase 2739759..2740373 Alkalilimnicola ehrlichii MLHE-1 4269996 YP_743240.2 CDS rdgC NC_008340.1 2740630 2741628 R Required for efficient pilin antigenic variation; recombination associated protein complement(2740630..2741628) Alkalilimnicola ehrlichii MLHE-1 4269997 YP_743241.1 CDS Mlg_2411 NC_008340.1 2742359 2742811 R PFAM: TspO/MBR family protein; KEGG: ret:RHE_PE00375 tryptophan rich sensory protein; TspO and MBR like proteins complement(2742359..2742811) Alkalilimnicola ehrlichii MLHE-1 4269998 YP_743242.1 CDS Mlg_2412 NC_008340.1 2743624 2745141 D TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyases tartrate/fumarate alpha region; Fe-S type hydro-lyases tartrate/fumarate beta region; KEGG: csa:Csal_1834 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region; fumarase 2743624..2745141 Alkalilimnicola ehrlichii MLHE-1 4269999 YP_743243.1 CDS Mlg_2413 NC_008340.1 2745289 2746080 D KEGG: eba:ebA4859 predicted integral membrane protein; hypothetical protein 2745289..2746080 Alkalilimnicola ehrlichii MLHE-1 4270000 YP_743244.1 CDS Mlg_2414 NC_008340.1 2746292 2747524 R PFAM: cyclic nucleotide-binding; KEGG: hch:HCH_05853 predicted signal transduction protein; cyclic nucleotide-binding protein complement(2746292..2747524) Alkalilimnicola ehrlichii MLHE-1 4270001 YP_743245.1 CDS Mlg_2415 NC_008340.1 2747674 2748144 D PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: noc:Noc_1086 peptidylprolyl isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 2747674..2748144 Alkalilimnicola ehrlichii MLHE-1 4270002 YP_743246.1 CDS Mlg_2416 NC_008340.1 2748268 2748606 R PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pae:PA3347 hypothetical protein; anti-sigma-factor antagonist complement(2748268..2748606) Alkalilimnicola ehrlichii MLHE-1 4270003 YP_743247.1 CDS Mlg_2417 NC_008340.1 2748647 2748856 R PFAM: protein of unknown function DUF1458; KEGG: csa:Csal_2871 protein of unknown function DUF1458; hypothetical protein complement(2748647..2748856) Alkalilimnicola ehrlichii MLHE-1 4269482 YP_743248.1 CDS Mlg_2418 NC_008340.1 2748915 2749520 R PFAM: isochorismatase hydrolase; KEGG: pae:PA3846 hypothetical protein; isochorismatase hydrolase complement(2748915..2749520) Alkalilimnicola ehrlichii MLHE-1 4269483 YP_743249.1 CDS Mlg_2419 NC_008340.1 2749926 2750426 R PFAM: outer membrane lipoprotein Slp; KEGG: vvy:VV1051 starvation-inducible outer membrane lipoprotein; outer membrane lipoprotein Slp complement(2749926..2750426) Alkalilimnicola ehrlichii MLHE-1 4269484 YP_743250.1 CDS Mlg_2420 NC_008340.1 2750438 2750983 R PFAM: outer membrane lipoprotein Slp; KEGG: noc:Noc_1325 outer membrane lipoprotein Slp; outer membrane lipoprotein Slp complement(2750438..2750983) Alkalilimnicola ehrlichii MLHE-1 4269485 YP_743251.1 CDS Mlg_2421 NC_008340.1 2751028 2751660 R PFAM: carbonic anhydrase; KEGG: xac:XAC1604 carbonic anhydrase; carbonate dehydratase complement(2751028..2751660) Alkalilimnicola ehrlichii MLHE-1 4269486 YP_743252.1 CDS Mlg_2422 NC_008340.1 2751761 2752525 R KEGG: plt:Plut_1005 ATPase, ParA family; ParaA family ATPase complement(2751761..2752525) Alkalilimnicola ehrlichii MLHE-1 4269487 YP_743253.1 CDS Mlg_2423 NC_008340.1 2752573 2753496 R PFAM: CHAD domain containing protein; KEGG: csa:Csal_2889 hypothetical protein; CHAD domain-containing protein complement(2752573..2753496) Alkalilimnicola ehrlichii MLHE-1 4269488 YP_743254.1 CDS Mlg_2424 NC_008340.1 2753612 2755630 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppu:PP0196 ABC transporter, ATP-binding protein; ABC transporter-like protein complement(2753612..2755630) Alkalilimnicola ehrlichii MLHE-1 4269489 YP_743255.1 CDS Mlg_2425 NC_008340.1 2756044 2757153 D TIGRFAM: formate dehydrogenase, gamma subunit; PFAM: cytochrome B561; KEGG: csa:Csal_1917 formate dehydrogenase, gamma subunit; formate dehydrogenase gamma subunit 2756044..2757153 Alkalilimnicola ehrlichii MLHE-1 4269490 YP_743256.1 CDS Mlg_2426 NC_008340.1 2757424 2759904 D TIGRFAM: Twin-arginine translocation pathway signal; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dsy:DSY4131 anaerobic dehydrogenase; molybdopterin oxidoreductase 2757424..2759904 Alkalilimnicola ehrlichii MLHE-1 4269491 YP_743257.1 CDS Mlg_2427 NC_008340.1 2759929 2760675 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sth:STH2083 molybdopterin oxidoreductase iron-sulfur binding subunit; 4Fe-4S ferredoxin 2759929..2760675 Alkalilimnicola ehrlichii MLHE-1 4269492 YP_743258.1 CDS Mlg_2428 NC_008340.1 2760677 2761510 D hypothetical protein 2760677..2761510 Alkalilimnicola ehrlichii MLHE-1 4269493 YP_743259.1 CDS Mlg_2429 NC_008340.1 2761584 2763026 R KEGG: mca:MCA2070 sensory box protein; TIGRFAM: metal dependent phophohydrolase; PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; HDIG domain protein; SMART: metal-dependent phosphohydrolase, HD region; response regulator receiver modulated metal dependent phosphohydrolase complement(2761584..2763026) Alkalilimnicola ehrlichii MLHE-1 4269494 YP_743260.1 CDS Mlg_2430 NC_008340.1 2763023 2764912 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: dar:Daro_1009 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal; histidine kinase complement(2763023..2764912) Alkalilimnicola ehrlichii MLHE-1 4269495 YP_743261.1 CDS Mlg_2431 NC_008340.1 2764983 2765297 R KEGG: csa:Csal_2967 hypothetical protein; hypothetical protein complement(2764983..2765297) Alkalilimnicola ehrlichii MLHE-1 4269496 YP_743262.1 CDS Mlg_2432 NC_008340.1 2765294 2765680 R KEGG: nme:NMB0979 hypothetical protein; hypothetical protein complement(2765294..2765680) Alkalilimnicola ehrlichii MLHE-1 4269497 YP_743263.1 CDS Mlg_2433 NC_008340.1 2765734 2766609 R TIGRFAM: biotin biosynthesis protein BioC; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: tbd:Tbd_0322 biotin biosynthesis protein BioC; biotin biosynthesis protein BioC complement(2765734..2766609) Alkalilimnicola ehrlichii MLHE-1 4269498 YP_743264.1 CDS Mlg_2434 NC_008340.1 2766606 2767367 R PFAM: alpha/beta hydrolase fold; KEGG: xcb:XC_0397 biotin biosynthesis protein; alpha/beta hydrolase complement(2766606..2767367) Alkalilimnicola ehrlichii MLHE-1 4268740 YP_743265.1 CDS Mlg_2435 NC_008340.1 2767364 2768539 R KEGG: mca:MCA1126 8-amino-7-oxononanoate synthase; TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase, class I and II; 8-amino-7-oxononanoate synthase complement(2767364..2768539) Alkalilimnicola ehrlichii MLHE-1 4268741 YP_743266.1 CDS Mlg_2436 NC_008340.1 2768536 2769549 R KEGG: xcv:XCV0403 biotin synthase BioB; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase complement(2768536..2769549) Alkalilimnicola ehrlichii MLHE-1 4268742 YP_743267.1 CDS Mlg_2437 NC_008340.1 2769921 2770709 D KEGG: mca:MCA1124 competence protein F; competence protein F 2769921..2770709 Alkalilimnicola ehrlichii MLHE-1 4268743 YP_743268.1 CDS ubiA NC_008340.1 2770712 2771593 R catalyzes the conversion of 4-Hydroxybenzoate into 3-octaprenyl-4-hydroxybenzoate, as part of the ubiquinone biosynthesis pathway; 4-hydroxybenzoate octaprenyltransferase complement(2770712..2771593) Alkalilimnicola ehrlichii MLHE-1 4268744 YP_743269.1 CDS Mlg_2439 NC_008340.1 2771599 2772147 R PFAM: Chorismate lyase; KEGG: eba:ebA2295 chorismate:pyruvate lyase, 4-hydroxybenzoate synthetase; chorismate lyase complement(2771599..2772147) Alkalilimnicola ehrlichii MLHE-1 4268745 YP_743270.1 CDS Mlg_2440 NC_008340.1 2772422 2774539 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(2772422..2774539) Alkalilimnicola ehrlichii MLHE-1 4268746 YP_743271.1 CDS Mlg_2441 NC_008340.1 2774804 2775187 R TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: mca:MCA2024 endoribonuclease L-PSP; endoribonuclease L-PSP complement(2774804..2775187) Alkalilimnicola ehrlichii MLHE-1 4268747 YP_743272.1 CDS Mlg_2442 NC_008340.1 2775214 2777406 R KEGG: pae:PA5338 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA complement(2775214..2777406) Alkalilimnicola ehrlichii MLHE-1 4268748 YP_743273.1 CDS rpoZ NC_008340.1 2777420 2777743 R Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(2777420..2777743) Alkalilimnicola ehrlichii MLHE-1 4268749 YP_743274.1 CDS Mlg_2444 NC_008340.1 2778373 2778984 R KEGG: ppu:PP5296 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; guanylate kinase complement(2778373..2778984) Alkalilimnicola ehrlichii MLHE-1 4268750 YP_743275.1 CDS Mlg_2445 NC_008340.1 2779310 2780176 R TIGRFAM: conserved hypothetical protein; PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: sfx:S4085 alpha helix protein; hypothetical protein complement(2779310..2780176) Alkalilimnicola ehrlichii MLHE-1 4268751 YP_743276.1 CDS rph NC_008340.1 2780583 2781299 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 2780583..2781299 Alkalilimnicola ehrlichii MLHE-1 4268752 YP_743277.1 CDS Mlg_2447 NC_008340.1 2781345 2781956 D TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: sde:Sde_3647 ribosomal protein L33; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 2781345..2781956 Alkalilimnicola ehrlichii MLHE-1 4268753 YP_743278.1 CDS Mlg_2448 NC_008340.1 2781953 2783149 D KEGG: xcb:XC_0963 oxidoreductase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; coproporphyrinogen III oxidase, anaerobic 2781953..2783149 Alkalilimnicola ehrlichii MLHE-1 4268754 YP_743279.1 CDS Mlg_2449 NC_008340.1 2783193 2783390 D KEGG: pfl:PFL_5128 hypothetical protein; hypothetical protein 2783193..2783390 Alkalilimnicola ehrlichii MLHE-1 4268755 YP_743280.1 CDS Mlg_2450 NC_008340.1 2783383 2783634 D transcriptional antiterminator, Rof 2783383..2783634 Alkalilimnicola ehrlichii MLHE-1 4268756 YP_743281.1 CDS Mlg_2451 NC_008340.1 2783702 2786110 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: pae:PA0575 hypothetical protein; periplasmic sensor diguanylate cyclase/phosphodiesterase 2783702..2786110 Alkalilimnicola ehrlichii MLHE-1 4268757 YP_743282.1 CDS Mlg_2452 NC_008340.1 2786273 2787586 R KEGG: dar:Daro_1338 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase-like protein; acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase-like protein complement(2786273..2787586) Alkalilimnicola ehrlichii MLHE-1 4270193 YP_743283.1 CDS Mlg_2453 NC_008340.1 2787602 2789005 R PFAM: Amidase; KEGG: bbr:BB4925 amidase; amidase complement(2787602..2789005) Alkalilimnicola ehrlichii MLHE-1 4270194 YP_743284.1 CDS Mlg_2454 NC_008340.1 2789078 2790343 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: dar:Daro_1358 Rieske (2Fe-2S) region; Rieske (2Fe-2S) domain-containing protein complement(2789078..2790343) Alkalilimnicola ehrlichii MLHE-1 4270195 YP_743285.1 CDS Mlg_2455 NC_008340.1 2790465 2791061 R KEGG: bpe:BP1562 hypothetical protein; hypothetical protein complement(2790465..2791061) Alkalilimnicola ehrlichii MLHE-1 4270196 YP_743286.1 CDS Mlg_2456 NC_008340.1 2791224 2792060 D PFAM: alpha/beta hydrolase fold; KEGG: dar:Daro_3786 alpha/beta hydrolase fold; alpha/beta hydrolase 2791224..2792060 Alkalilimnicola ehrlichii MLHE-1 4270197 YP_743287.1 CDS Mlg_2457 NC_008340.1 2792087 2792722 D PFAM: HesB/YadR/YfhF-family protein; nitrogen-fixing NifU domain protein; KEGG: ilo:IL0248 hypothetical protein; HesB/YadR/YfhF-family protein 2792087..2792722 Alkalilimnicola ehrlichii MLHE-1 4270198 YP_743288.1 CDS Mlg_2458 NC_008340.1 2792799 2793674 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bja:bll5282 biphenyl-2,3-diol 1,2-dioxygenase; biphenyl-2,3-diol 1,2-dioxygenase complement(2792799..2793674) Alkalilimnicola ehrlichii MLHE-1 4270199 YP_743289.1 CDS Mlg_2459 NC_008340.1 2793726 2794784 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: dar:Daro_1359 oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region; oxidoreductase FAD-binding subunit complement(2793726..2794784) Alkalilimnicola ehrlichii MLHE-1 4270200 YP_743290.1 CDS Mlg_2460 NC_008340.1 2794996 2795778 D PFAM: Hydratase/decarboxylase; KEGG: bur:Bcep18194_B2961 4-oxalocrotonate decarboxylase; 4-oxalocrotonate decarboxylase 2794996..2795778 Alkalilimnicola ehrlichii MLHE-1 4270201 YP_743291.1 CDS Mlg_2461 NC_008340.1 2795811 2796713 D catalyzes the formation of acetyl-CoA from acetalaldehyde; acetaldehyde dehydrogenase 2795811..2796713 Alkalilimnicola ehrlichii MLHE-1 4270202 YP_743292.1 CDS Mlg_2462 NC_008340.1 2796724 2797752 D catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate; 4-hydroxy-2-ketovalerate aldolase 2796724..2797752 Alkalilimnicola ehrlichii MLHE-1 4270203 YP_743293.1 CDS Mlg_2463 NC_008340.1 2797814 2798422 D PFAM: NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase; KEGG: tcx:Tcr_2059 (acyl-carrier protein) phosphodiesterase; ACP phosphodiesterase 2797814..2798422 Alkalilimnicola ehrlichii MLHE-1 4270204 YP_743294.1 CDS Mlg_2464 NC_008340.1 2798566 2799312 R TIGRFAM: Glutaredoxin-family domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; glutaredoxin; Redoxin domain protein; KEGG: ava:Ava_4981 glutaredoxin-like region; glutaredoxin family protein complement(2798566..2799312) Alkalilimnicola ehrlichii MLHE-1 4270205 YP_743295.1 CDS Mlg_2465 NC_008340.1 2799451 2800716 R KEGG: dar:Daro_1352 hypothetical protein; hypothetical protein complement(2799451..2800716) Alkalilimnicola ehrlichii MLHE-1 4270206 YP_743296.1 CDS Mlg_2466 NC_008340.1 2800737 2802275 R KEGG: dar:Daro_1351 probable regulatory protein, LysR; regulatory protein, LysR complement(2800737..2802275) Alkalilimnicola ehrlichii MLHE-1 4270207 YP_743297.1 CDS Mlg_2467 NC_008340.1 2802324 2804702 R KEGG: dar:Daro_1350 exporters of the RND superfamily; RND efflux transporter complement(2802324..2804702) Alkalilimnicola ehrlichii MLHE-1 4270208 YP_743298.1 CDS Mlg_2468 NC_008340.1 2804709 2805824 R PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: dar:Daro_1349 glycosyl hydrolase, BNR repeat; BNR repeat-containing glycosyl hydrolase complement(2804709..2805824) Alkalilimnicola ehrlichii MLHE-1 4270209 YP_743299.1 CDS Mlg_2469 NC_008340.1 2806171 2806773 D PFAM: regulatory protein, MarR; helix-turn-helix, HxlR type; KEGG: dar:Daro_1332 hypothetical protein; transcriptional regulator 2806171..2806773 Alkalilimnicola ehrlichii MLHE-1 4268410 YP_743300.1 CDS Mlg_2470 NC_008340.1 2806884 2807507 D PFAM: regulatory protein, MarR; KEGG: dar:Daro_1332 hypothetical protein; transcriptional regulator 2806884..2807507 Alkalilimnicola ehrlichii MLHE-1 4268411 YP_743301.1 CDS Mlg_2471 NC_008340.1 2807570 2809069 R PFAM: carboxyl transferase; malonate decarboxylase gamma subunit; KEGG: rfr:Rfer_1845 acetyl-CoA carboxylase beta subunit; malonate decarboxylase subunit gamma complement(2807570..2809069) Alkalilimnicola ehrlichii MLHE-1 4268412 YP_743302.1 CDS Mlg_2472 NC_008340.1 2809315 2810292 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mag:amb4555 NADPH:quinone reductase and related Zn-dependent oxidoreductase; alcohol dehydrogenase complement(2809315..2810292) Alkalilimnicola ehrlichii MLHE-1 4268413 YP_743303.1 CDS Mlg_2473 NC_008340.1 2810354 2811232 R TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: dar:Daro_1735 UTP--glucose-1-phosphate uridylyltransferase, bacterial and archaeal type; UDP-glucose pyrophosphorylase complement(2810354..2811232) Alkalilimnicola ehrlichii MLHE-1 4268414 YP_743304.1 CDS Mlg_2474 NC_008340.1 2811289 2815176 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(2811289..2815176) Alkalilimnicola ehrlichii MLHE-1 4268415 YP_743305.1 CDS Mlg_2475 NC_008340.1 2815200 2816240 R KEGG: dar:Daro_0847 NlpBDapX lipoprotein; NlpBDapX lipoprotein complement(2815200..2816240) Alkalilimnicola ehrlichii MLHE-1 4268416 YP_743306.1 CDS Mlg_2476 NC_008340.1 2816253 2817125 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(2816253..2817125) Alkalilimnicola ehrlichii MLHE-1 4268417 YP_743307.1 CDS Mlg_2477 NC_008340.1 2817241 2817867 R hypothetical protein complement(2817241..2817867) Alkalilimnicola ehrlichii MLHE-1 4268418 YP_743308.1 CDS Mlg_2478 NC_008340.1 2817886 2818497 R PFAM: protein of unknown function DUF583; KEGG: csa:Csal_2787 protein of unknown function DUF583; hypothetical protein complement(2817886..2818497) Alkalilimnicola ehrlichii MLHE-1 4268419 YP_743309.1 CDS Mlg_2479 NC_008340.1 2818641 2819192 D PFAM: amino acid-binding ACT domain protein; KEGG: hch:HCH_04907 glycine cleavage system regulatory protein; amino acid-binding ACT domain-containing protein 2818641..2819192 Alkalilimnicola ehrlichii MLHE-1 4268420 YP_743310.1 CDS Mlg_2480 NC_008340.1 2819233 2819703 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bxe:Bxe_A2391 bacterioferritin comigratory oxidoreductase; redoxin domain-containing protein 2819233..2819703 Alkalilimnicola ehrlichii MLHE-1 4268421 YP_743311.1 CDS Mlg_2481 NC_008340.1 2819748 2821100 D PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: noc:Noc_1210 PhoH-like protein; PhoH family protein 2819748..2821100 Alkalilimnicola ehrlichii MLHE-1 4268422 YP_743312.1 CDS Mlg_2482 NC_008340.1 2821212 2822291 R PFAM: protein of unknown function UPF0118; KEGG: noc:Noc_0190 protein of unknown function UPF0118; hypothetical protein complement(2821212..2822291) Alkalilimnicola ehrlichii MLHE-1 4268423 YP_743313.1 CDS Mlg_2483 NC_008340.1 2822377 2823879 D PFAM: peptidase M48, Ste24p; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; KEGG: noc:Noc_2619 peptidase M48, Ste24p; peptidase M48, Ste24p 2822377..2823879 Alkalilimnicola ehrlichii MLHE-1 4268424 YP_743314.1 CDS Mlg_2484 NC_008340.1 2823963 2824838 D KEGG: xcb:XC_1958 PHA synthase subunit; hypothetical protein 2823963..2824838 Alkalilimnicola ehrlichii MLHE-1 4268425 YP_743315.1 CDS Mlg_2485 NC_008340.1 2824835 2825926 D PFAM: alpha/beta hydrolase fold; KEGG: xcv:XCV2209 poly-beta-hydroxybutyrate polymerase; alpha/beta hydrolase 2824835..2825926 Alkalilimnicola ehrlichii MLHE-1 4268426 YP_743316.1 CDS Mlg_2486 NC_008340.1 2826419 2827165 R TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Acetoacetyl-CoA reductase; KEGG: hch:HCH_04996 acetoacetyl-CoA reductase; 3-oxoacyl-ACP reductase complement(2826419..2827165) Alkalilimnicola ehrlichii MLHE-1 4268427 YP_743317.1 CDS Mlg_2487 NC_008340.1 2827355 2827888 R TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: xac:XAC2402 hypothetical protein; polyhydroxyalkonate synthesis repressor, PhaR complement(2827355..2827888) Alkalilimnicola ehrlichii MLHE-1 4270806 YP_743318.1 CDS Mlg_2488 NC_008340.1 2828082 2828909 D KEGG: dar:Daro_1978 HDIG; signal transduction protein 2828082..2828909 Alkalilimnicola ehrlichii MLHE-1 4270807 YP_743319.1 CDS Mlg_2489 NC_008340.1 2828953 2830305 R KEGG: noc:Noc_0255 para-aminobenzoate synthase, component I; TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; aminodeoxychorismate synthase, subunit I complement(2828953..2830305) Alkalilimnicola ehrlichii MLHE-1 4270808 YP_743320.1 CDS Mlg_2490 NC_008340.1 2830410 2832155 D PFAM: AMP-dependent synthetase and ligase; KEGG: jan:Jann_1256 AMP-dependent synthetase and ligase; AMP-dependent synthetase/ligase 2830410..2832155 Alkalilimnicola ehrlichii MLHE-1 4270809 YP_743321.1 CDS Mlg_2491 NC_008340.1 2832238 2833278 D PFAM: Patatin; KEGG: bja:bll7964 hypothetical protein; patatin 2832238..2833278 Alkalilimnicola ehrlichii MLHE-1 4270810 YP_743322.1 CDS Mlg_2492 NC_008340.1 2833335 2834087 D PFAM: protein of unknown function DUF28; KEGG: neu:NE0210 hypothetical protein; hypothetical protein 2833335..2834087 Alkalilimnicola ehrlichii MLHE-1 4270811 YP_743323.1 CDS ruvC NC_008340.1 2834087 2834584 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2834087..2834584 Alkalilimnicola ehrlichii MLHE-1 4270812 YP_743324.1 CDS Mlg_2494 NC_008340.1 2834581 2835207 D KEGG: pae:PA0966 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein, RuvA; RuvA domain protein; SMART: Helix-hairpin-helix DNA-binding, class 1; Holliday junction DNA helicase RuvA 2834581..2835207 Alkalilimnicola ehrlichii MLHE-1 4270813 YP_743325.1 CDS Mlg_2495 NC_008340.1 2835244 2835471 R KEGG: hch:HCH_02750 hypothetical protein; hypothetical protein complement(2835244..2835471) Alkalilimnicola ehrlichii MLHE-1 4270814 YP_743326.1 CDS Mlg_2496 NC_008340.1 2835627 2837843 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(2835627..2837843) Alkalilimnicola ehrlichii MLHE-1 4270815 YP_743327.1 CDS Mlg_2497 NC_008340.1 2837857 2838528 D PFAM: heat shock protein DnaJ domain protein; KEGG: pae:PA1191 hypothetical protein; molecular chaperone DnaJ 2837857..2838528 Alkalilimnicola ehrlichii MLHE-1 4270816 YP_743328.1 CDS Mlg_2498 NC_008340.1 2838749 2840062 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; KEGG: tbd:Tbd_2180 long-chain fatty acid transport protein; aromatic hydrocarbon degradation membrane protein 2838749..2840062 Alkalilimnicola ehrlichii MLHE-1 4270817 YP_743329.1 CDS Mlg_2499 NC_008340.1 2840103 2840648 D KEGG: tbd:Tbd_0575 hypothetical protein; hypothetical protein 2840103..2840648 Alkalilimnicola ehrlichii MLHE-1 4270818 YP_743330.1 CDS Mlg_2500 NC_008340.1 2840775 2841416 D PFAM: SirA family protein; KEGG: mag:amb0858 predicted redox protein; SirA family protein 2840775..2841416 Alkalilimnicola ehrlichii MLHE-1 4270819 YP_743331.1 CDS Mlg_2501 NC_008340.1 2841443 2842669 R KEGG: pol:Bpro_5280 hypothetical protein; hypothetical protein complement(2841443..2842669) Alkalilimnicola ehrlichii MLHE-1 4270820 YP_743332.1 CDS Mlg_2502 NC_008340.1 2842900 2843949 D KEGG: hma:rrnAC1162 hypothetical protein; hypothetical protein 2842900..2843949 Alkalilimnicola ehrlichii MLHE-1 4270821 YP_743333.1 CDS Mlg_2503 NC_008340.1 2843933 2844472 D KEGG: hma:rrnAC1161 hypothetical protein; hypothetical protein 2843933..2844472 Alkalilimnicola ehrlichii MLHE-1 4270822 YP_743334.1 CDS Mlg_2504 NC_008340.1 2844469 2845800 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: rfr:Rfer_3684 periplasmic sensor signal transduction histidine kinase; periplasmic sensor signal transduction histidine kinase complement(2844469..2845800) Alkalilimnicola ehrlichii MLHE-1 4268758 YP_743335.1 CDS Mlg_2505 NC_008340.1 2845800 2846480 R PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: xoo:XOO0423 two-component system regulatory protein; two component transcriptional regulator complement(2845800..2846480) Alkalilimnicola ehrlichii MLHE-1 4268759 YP_743336.1 CDS Mlg_2506 NC_008340.1 2846480 2846713 R KEGG: pol:Bpro_1955 propeptide, PepSY amd peptidase M4; propeptide, PepSY amd peptidase M4 complement(2846480..2846713) Alkalilimnicola ehrlichii MLHE-1 4268760 YP_743337.1 CDS Mlg_2507 NC_008340.1 2846766 2847281 R PFAM: 17 kDa surface antigen; KEGG: hch:HCH_06412 predicted outer membrane lipoprotein; 17 kDa surface antigen complement(2846766..2847281) Alkalilimnicola ehrlichii MLHE-1 4268761 YP_743338.1 CDS Mlg_2508 NC_008340.1 2847620 2847988 D KEGG: neu:NE1189 hypothetical protein; hypothetical protein 2847620..2847988 Alkalilimnicola ehrlichii MLHE-1 4268762 YP_743339.1 CDS Mlg_2509 NC_008340.1 2848018 2849049 D KEGG: pol:Bpro_4057 hypothetical protein; hypothetical protein 2848018..2849049 Alkalilimnicola ehrlichii MLHE-1 4268763 YP_743340.1 CDS Mlg_2510 NC_008340.1 2849021 2850013 R PFAM: alpha/beta hydrolase fold; PGAP1 family protein; KEGG: noc:Noc_0872 alpha/beta hydrolase fold; alpha/beta hydrolase complement(2849021..2850013) Alkalilimnicola ehrlichii MLHE-1 4268764 YP_743341.1 CDS Mlg_2511 NC_008340.1 2849998 2851257 R KEGG: pst:PSPTO1346 sensory box/GGDEF domain protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(2849998..2851257) Alkalilimnicola ehrlichii MLHE-1 4268765 YP_743342.1 CDS Mlg_2512 NC_008340.1 2851466 2853157 D PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: mca:MCA2577 dehydrogenase subunit; NADH dehydrogenase (quinone) 2851466..2853157 Alkalilimnicola ehrlichii MLHE-1 4268766 YP_743343.1 CDS Mlg_2513 NC_008340.1 2853157 2855940 D TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: reu:Reut_B4651 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 2853157..2855940 Alkalilimnicola ehrlichii MLHE-1 4268767 YP_743344.1 CDS Mlg_2514 NC_008340.1 2855986 2857752 R KEGG: bbr:BB4050 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 1 complement(2855986..2857752) Alkalilimnicola ehrlichii MLHE-1 4268768 YP_743345.1 CDS Mlg_2515 NC_008340.1 2857966 2858904 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll3759 similar to ABC transporter (binding protein); glyoxalase/bleomycin resistance protein/dioxygenase complement(2857966..2858904) Alkalilimnicola ehrlichii MLHE-1 4268769 YP_743346.1 CDS Mlg_2516 NC_008340.1 2859217 2861013 R TIGRFAM: RNA polymerase sigma factor RpoD; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70, non-essential domain protein; sigma-70 region 1.2; KEGG: ppu:PP0387 RNA polymerase sigma factor RpoD; RNA polymerase sigma-70 subunit RpoD complement(2859217..2861013) Alkalilimnicola ehrlichii MLHE-1 4268771 YP_743347.1 CDS Mlg_2517 NC_008340.1 2861112 2862965 R KEGG: ppr:PBPRA0431 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase DnaG, DnaB-binding; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; DNA primase complement(2861112..2862965) Alkalilimnicola ehrlichii MLHE-1 4268772 YP_743348.1 CDS Mlg_2518 NC_008340.1 2863012 2863470 R PFAM: GatB/Yqey domain protein; KEGG: sde:Sde_0718 hypothetical protein; GatB/Yqey domain-containing protein complement(2863012..2863470) Alkalilimnicola ehrlichii MLHE-1 4268773 YP_743349.1 CDS rpsU NC_008340.1 2863497 2863712 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(2863497..2863712) Alkalilimnicola ehrlichii MLHE-1 4268774 YP_743350.1 CDS Mlg_2520 NC_008340.1 2863838 2864857 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; DNA-binding/iron metalloprotein/AP endonuclease 2863838..2864857 Alkalilimnicola ehrlichii MLHE-1 4270159 YP_743351.1 CDS Mlg_2521 NC_008340.1 2864882 2865493 R PFAM: protein of unknown function DUF205; KEGG: lpn:lpg2356 transmembrane protein; acyl-phosphate glycerol-3-phosphate acyltransferase complement(2864882..2865493) Alkalilimnicola ehrlichii MLHE-1 4270160 YP_743352.1 CDS Mlg_2522 NC_008340.1 2865864 2866220 D TIGRFAM: dihydroneopterin aldolase; KEGG: pae:PA0582 dihydroneopterin aldolase; dihydroneopterin aldolase 2865864..2866220 Alkalilimnicola ehrlichii MLHE-1 4270161 YP_743353.1 CDS Mlg_2523 NC_008340.1 2866217 2866705 D TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: noc:Noc_0038 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HppK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2866217..2866705 Alkalilimnicola ehrlichii MLHE-1 4270162 YP_743354.1 CDS Mlg_2524 NC_008340.1 2866702 2867913 D PFAM: protein of unknown function DUF185; KEGG: dar:Daro_4140 protein of unknown function DUF185; hypothetical protein 2866702..2867913 Alkalilimnicola ehrlichii MLHE-1 4270163 YP_743355.1 CDS Mlg_2525 NC_008340.1 2868200 2868490 D KEGG: mca:MCA2737 hypothetical protein; hypothetical protein 2868200..2868490 Alkalilimnicola ehrlichii MLHE-1 4270164 YP_743356.1 CDS Mlg_2526 NC_008340.1 2868500 2869183 D PFAM: Endonuclease V; KEGG: mca:MCA0045 endonuclease V; endonuclease V 2868500..2869183 Alkalilimnicola ehrlichii MLHE-1 4270165 YP_743357.1 CDS Mlg_2527 NC_008340.1 2869180 2869563 D KEGG: eba:ebB186 hypothetical protein; hypothetical protein 2869180..2869563 Alkalilimnicola ehrlichii MLHE-1 4270166 YP_743358.1 CDS Mlg_2528 NC_008340.1 2869568 2871319 D PFAM: TrkA-N domain protein; KEGG: mfa:Mfla_2071 TrkA-N; TrkA domain-containing protein 2869568..2871319 Alkalilimnicola ehrlichii MLHE-1 4270167 YP_743359.1 CDS Mlg_2529 NC_008340.1 2871356 2872006 R PFAM: OmpA/MotB domain protein; KEGG: mfa:Mfla_1578 OmpA/MotB; OmpA/MotB domain-containing protein complement(2871356..2872006) Alkalilimnicola ehrlichii MLHE-1 4270168 YP_743360.1 CDS Mlg_2530 NC_008340.1 2872126 2873154 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: mfa:Mfla_0031 oxidoreductase FAD/NAD(P)-binding; oxidoreductase FAD/NAD(P)-binding subunit complement(2872126..2873154) Alkalilimnicola ehrlichii MLHE-1 4270169 YP_743361.1 CDS Mlg_2531 NC_008340.1 2873183 2874649 R TIGRFAM: UbiD family decarboxylases; PFAM: Carboxylyase-related protein; KEGG: pfl:PFL_5980 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; UbiD family decarboxylase complement(2873183..2874649) Alkalilimnicola ehrlichii MLHE-1 4270170 YP_743362.1 CDS Mlg_2532 NC_008340.1 2874833 2875306 D KEGG: ssn:SSO_0271 hypothetical protein; hypothetical protein 2874833..2875306 Alkalilimnicola ehrlichii MLHE-1 4270171 YP_743363.1 CDS Mlg_2533 NC_008340.1 2875802 2877841 R PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; KEGG: noc:Noc_0208 oligopeptidase A; oligopeptidase A complement(2875802..2877841) Alkalilimnicola ehrlichii MLHE-1 4270172 YP_743364.1 CDS Mlg_2534 NC_008340.1 2878188 2879543 R TIGRFAM: glutathione-disulfide reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: yps:YPTB3818 glutathione reductase; NADPH-glutathione reductase complement(2878188..2879543) Alkalilimnicola ehrlichii MLHE-1 4270173 YP_743365.1 CDS Mlg_2535 NC_008340.1 2879625 2880449 R KEGG: pol:Bpro_1826 hypothetical protein; hypothetical protein complement(2879625..2880449) Alkalilimnicola ehrlichii MLHE-1 4270174 YP_743366.1 CDS Mlg_2536 NC_008340.1 2880674 2880883 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: pae:PA1159 probable cold-shock protein; cold-shock DNA-binding protein family protein 2880674..2880883 Alkalilimnicola ehrlichii MLHE-1 4270175 YP_743367.1 CDS Mlg_2537 NC_008340.1 2880955 2881431 R PFAM: protein of unknown function DUF55; KEGG: mca:MCA0353 hypothetical protein; hypothetical protein complement(2880955..2881431) Alkalilimnicola ehrlichii MLHE-1 4270925 YP_743368.1 CDS Mlg_2538 NC_008340.1 2881729 2882358 R PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: pfl:PFL_5971 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase complement(2881729..2882358) Alkalilimnicola ehrlichii MLHE-1 4270926 YP_743369.1 CDS Mlg_2539 NC_008340.1 2882667 2882951 R PFAM: protein of unknown function DUF710; KEGG: nmu:Nmul_A0626 protein of unknown function DUF710; cell division protein ZapA complement(2882667..2882951) Alkalilimnicola ehrlichii MLHE-1 4270927 YP_743370.1 CDS Mlg_2540 NC_008340.1 2882977 2883192 R TIGRFAM: conserved hypothetical protein; KEGG: xcb:XC_0903 hypothetical protein; hypothetical protein complement(2882977..2883192) Alkalilimnicola ehrlichii MLHE-1 4270928 YP_743371.1 CDS Mlg_2541 NC_008340.1 2883340 2883915 D TIGRFAM: yecA family protein; PFAM: protein of unknown function UPF0149; KEGG: sdn:Sden_0830 YgfB and YecA; hypothetical protein 2883340..2883915 Alkalilimnicola ehrlichii MLHE-1 4270929 YP_743372.1 CDS Mlg_2542 NC_008340.1 2883927 2885240 D PFAM: peptidase M24; peptidase M24B, X-Pro dipeptidase/aminopeptidase domain protein; KEGG: noc:Noc_2579 peptidase M24; aminopeptidase 2883927..2885240 Alkalilimnicola ehrlichii MLHE-1 4270930 YP_743373.1 CDS Mlg_2543 NC_008340.1 2885237 2886478 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; 2-polyprenyl-6-methoxyphenol 4-hydroxylase; PFAM: monooxygenase, FAD-binding; KEGG: noc:Noc_2580 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; 2-octaprenyl-6-methoxyphenol hydroxylase/2-octaprenyl-3-methyl-6-methoxy-1, 4-benzoquinol hydroxylase 2885237..2886478 Alkalilimnicola ehrlichii MLHE-1 4270931 YP_743374.1 CDS Mlg_2544 NC_008340.1 2886475 2887698 D TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: noc:Noc_2581 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 2886475..2887698 Alkalilimnicola ehrlichii MLHE-1 4270932 YP_743375.1 CDS Mlg_2545 NC_008340.1 2887649 2889319 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: noc:Noc_0722 signal transduction histidine kinase; periplasmic sensor signal transduction histidine kinase complement(2887649..2889319) Alkalilimnicola ehrlichii MLHE-1 4270933 YP_743376.1 CDS Mlg_2546 NC_008340.1 2889326 2889592 R KEGG: rme:Rmet_3092 hypothetical protein; hypothetical protein complement(2889326..2889592) Alkalilimnicola ehrlichii MLHE-1 4270934 YP_743377.1 CDS sucC NC_008340.1 2889741 2890916 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 2889741..2890916 Alkalilimnicola ehrlichii MLHE-1 4270935 YP_743378.1 CDS Mlg_2548 NC_008340.1 2890946 2891818 D TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; KEGG: csa:Csal_1221 succinyl-CoA synthetase, alpha subunit; succinyl-CoA synthetase alpha subunit 2890946..2891818 Alkalilimnicola ehrlichii MLHE-1 4270936 YP_743379.1 CDS Mlg_2549 NC_008340.1 2891927 2893552 D KEGG: mca:MCA0969 NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthase; ExsB family protein; NAD+ synthetase 2891927..2893552 Alkalilimnicola ehrlichii MLHE-1 4270937 YP_743380.1 CDS Mlg_2550 NC_008340.1 2893679 2894017 D PFAM: nitrogen regulatory protein P-II; KEGG: pmu:PM2004 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 2893679..2894017 Alkalilimnicola ehrlichii MLHE-1 4270938 YP_743381.1 CDS Mlg_2551 NC_008340.1 2894078 2894842 R KEGG: son:SO3580 lipoprotein; lipoprotein complement(2894078..2894842) Alkalilimnicola ehrlichii MLHE-1 4270939 YP_743382.1 CDS Mlg_2552 NC_008340.1 2894913 2895854 D KEGG: csa:Csal_0497 pseudouridine synthase, RluD; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; ribosomal large subunit pseudouridine synthase D 2894913..2895854 Alkalilimnicola ehrlichii MLHE-1 4270940 YP_743383.1 CDS Mlg_2553 NC_008340.1 2895909 2897009 D PFAM: ATP dependent DNA ligase; KEGG: noc:Noc_1413 ATP-dependent DNA ligase; ATP dependent DNA ligase 2895909..2897009 Alkalilimnicola ehrlichii MLHE-1 4270941 YP_743384.1 CDS Mlg_2554 NC_008340.1 2897032 2898348 R PFAM: aminotransferase, class I and II; KEGG: csa:Csal_1034 aminotransferase, class I and II; aminotransferase complement(2897032..2898348) Alkalilimnicola ehrlichii MLHE-1 4270942 YP_743385.1 CDS Mlg_2555 NC_008340.1 2898596 2899378 D TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dar:Daro_4161 HAD-superfamily subfamily IIA hydrolase, hypothetical 2:HAD-superfamily hydrolase, subfamily IIA; HAD family hydrolase 2898596..2899378 Alkalilimnicola ehrlichii MLHE-1 4269658 YP_743386.1 CDS Mlg_2556 NC_008340.1 2899375 2899953 R KEGG: noc:Noc_1414 hypothetical protein; hypothetical protein complement(2899375..2899953) Alkalilimnicola ehrlichii MLHE-1 4269659 YP_743387.1 CDS Mlg_2557 NC_008340.1 2900036 2900851 R PFAM: protein of unknown function DUF152; KEGG: cvi:CV2191 conserved hypothetical protein; hypothetical protein complement(2900036..2900851) Alkalilimnicola ehrlichii MLHE-1 4269660 YP_743388.1 CDS Mlg_2558 NC_008340.1 2900908 2903502 D PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: noc:Noc_2381 ATP-dependent Clp protease; ATPase 2900908..2903502 Alkalilimnicola ehrlichii MLHE-1 4269661 YP_743389.1 CDS Mlg_2559 NC_008340.1 2903650 2903898 D KEGG: xcb:XC_3180 type I site-specific restriction-modification system, R (restriction) subunit and related helicases; hypothetical protein 2903650..2903898 Alkalilimnicola ehrlichii MLHE-1 4269662 YP_743390.1 CDS Mlg_2560 NC_008340.1 2903975 2904256 D hypothetical protein 2903975..2904256 Alkalilimnicola ehrlichii MLHE-1 4269663 YP_743391.1 CDS Mlg_2561 NC_008340.1 2904258 2904518 D PFAM: helix-turn-helix domain protein; KEGG: noc:Noc_0167 transcriptional regulator, XRE family; XRE family transcriptional regulator 2904258..2904518 Alkalilimnicola ehrlichii MLHE-1 4269664 YP_743392.1 CDS Mlg_2562 NC_008340.1 2904627 2904884 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: vvu:VV12432 antitoxin of toxin-antitoxin stability system; prevent-host-death family protein 2904627..2904884 Alkalilimnicola ehrlichii MLHE-1 4269665 YP_743393.1 CDS Mlg_2563 NC_008340.1 2904872 2905183 D PFAM: plasmid stabilization system; KEGG: vvu:VV12433 plasmid stabilization system protein; plasmid stabilization system protein 2904872..2905183 Alkalilimnicola ehrlichii MLHE-1 4269666 YP_743394.1 CDS Mlg_2564 NC_008340.1 2905210 2906115 R PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: atc:AGR_C_4804 glycerol-3-phosphate dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein complement(2905210..2906115) Alkalilimnicola ehrlichii MLHE-1 4269667 YP_743395.1 CDS Mlg_2565 NC_008340.1 2906649 2907536 R PFAM: UDP-glucose/GDP-mannose dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; Shikimate/quinate 5-dehydrogenase; KEGG: mca:MCA2048 oxidoreductase, Gfo/Idh/MocA family; 6-phosphogluconate dehydrogenase complement(2906649..2907536) Alkalilimnicola ehrlichii MLHE-1 4269668 YP_743396.1 CDS Mlg_2566 NC_008340.1 2907577 2908155 R TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: tbd:Tbd_1845 protease; DJ-1 family protein complement(2907577..2908155) Alkalilimnicola ehrlichii MLHE-1 4269669 YP_743397.1 CDS Mlg_2567 NC_008340.1 2908152 2908946 R PFAM: protein of unknown function DUF610, YibQ; KEGG: pha:PSHAa0363 hypothetical protein; hypothetical protein complement(2908152..2908946) Alkalilimnicola ehrlichii MLHE-1 4269670 YP_743398.1 CDS Mlg_2568 NC_008340.1 2908951 2910231 R KEGG: noc:Noc_0030 peptidase S41A; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; C-terminal processing peptidase-3 complement(2908951..2910231) Alkalilimnicola ehrlichii MLHE-1 4269671 YP_743399.1 CDS Mlg_2569 NC_008340.1 2910346 2911563 R PFAM: peptidase M23B; KEGG: ilo:IL0232 membrane-associated metallopeptidase, NlpD family; peptidase M23B complement(2910346..2911563) Alkalilimnicola ehrlichii MLHE-1 4269672 YP_743400.1 CDS Mlg_2570 NC_008340.1 2911653 2912108 D PFAM: Rhodanese domain protein; KEGG: ppr:PBPRA0225 hypothetical protein; rhodanese domain-containing protein 2911653..2912108 Alkalilimnicola ehrlichii MLHE-1 4269673 YP_743401.1 CDS Mlg_2571 NC_008340.1 2912192 2912758 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 2912192..2912758 Alkalilimnicola ehrlichii MLHE-1 4269674 YP_743402.1 CDS gpsA NC_008340.1 2912780 2913778 D catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 2912780..2913778 Alkalilimnicola ehrlichii MLHE-1 4270281 YP_743403.1 CDS Mlg_2573 NC_008340.1 2913786 2914247 D PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: noc:Noc_2823 RNA methyltransferase TrmH, group 2; tRNA/rRNA methyltransferase SpoU 2913786..2914247 Alkalilimnicola ehrlichii MLHE-1 4270282 YP_743404.1 CDS Mlg_2574 NC_008340.1 2914337 2915356 D PFAM: extracellular solute-binding protein, family 1; KEGG: tbd:Tbd_0990 ABC transporter, iron binding protein; extracellular solute-binding protein 2914337..2915356 Alkalilimnicola ehrlichii MLHE-1 4270283 YP_743405.1 CDS Mlg_2575 NC_008340.1 2915361 2917067 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pae:PA5216 iron transport system permease; binding-protein-dependent transport systems inner membrane component 2915361..2917067 Alkalilimnicola ehrlichii MLHE-1 4270284 YP_743406.1 CDS gcvT NC_008340.1 2917152 2918246 D catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 2917152..2918246 Alkalilimnicola ehrlichii MLHE-1 4270285 YP_743407.1 CDS Mlg_2577 NC_008340.1 2918325 2918717 D part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 2918325..2918717 Alkalilimnicola ehrlichii MLHE-1 4270286 YP_743408.1 CDS Mlg_2578 NC_008340.1 2918723 2920105 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 2918723..2920105 Alkalilimnicola ehrlichii MLHE-1 4270287 YP_743409.1 CDS Mlg_2579 NC_008340.1 2920122 2920622 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ade:Adeh_0828 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; thiol peroxidase 2920122..2920622 Alkalilimnicola ehrlichii MLHE-1 4270288 YP_743410.1 CDS Mlg_2580 NC_008340.1 2920633 2922168 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 2920633..2922168 Alkalilimnicola ehrlichii MLHE-1 4270289 YP_743411.1 CDS Mlg_2581 NC_008340.1 2922481 2923368 R KEGG: dps:DP0063 hypothetical protein; hypothetical protein complement(2922481..2923368) Alkalilimnicola ehrlichii MLHE-1 4270290 YP_743412.1 CDS Mlg_2582 NC_008340.1 2923506 2924585 D PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1-like repeat; Sel1 domain-containing protein 2923506..2924585 Alkalilimnicola ehrlichii MLHE-1 4270291 YP_743413.1 CDS Mlg_2583 NC_008340.1 2924640 2926031 D KEGG: pca:Pcar_2788 hypothetical protein; hypothetical protein 2924640..2926031 Alkalilimnicola ehrlichii MLHE-1 4270292 YP_743414.1 CDS Mlg_2584 NC_008340.1 2926110 2929604 D KEGG: noc:Noc_1583 hypothetical protein; hypothetical protein 2926110..2929604 Alkalilimnicola ehrlichii MLHE-1 4270293 YP_743415.1 CDS Mlg_2585 NC_008340.1 2929920 2930117 D KEGG: nar:Saro_0851 hypothetical protein; hypothetical protein 2929920..2930117 Alkalilimnicola ehrlichii MLHE-1 4270294 YP_743416.1 CDS Mlg_2586 NC_008340.1 2930211 2930654 R catalyzes the reaction of cyanate and bicarbonate to produce ammonia and carbon dioxide; cyanate hydratase complement(2930211..2930654) Alkalilimnicola ehrlichii MLHE-1 4270295 YP_743417.1 CDS Mlg_2587 NC_008340.1 2930741 2931613 R KEGG: mfa:Mfla_2170 nitrate transport ATP-binding subunits C and D; TIGRFAM: nitrate ABC transporter, ATPase subunits C and D; PFAM: ABC transporter related; SMART: AAA ATPase; nitrate ABC transporter ATPases C and D complement(2930741..2931613) Alkalilimnicola ehrlichii MLHE-1 4270296 YP_743418.1 CDS Mlg_2588 NC_008340.1 2931710 2932549 R TIGRFAM: nitrate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rfr:Rfer_3741 nitrate transport permease; nitrate ABC transporter, inner membrane subunit complement(2931710..2932549) Alkalilimnicola ehrlichii MLHE-1 4270297 YP_743419.1 CDS Mlg_2589 NC_008340.1 2932553 2933980 R TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpa:RPA2112 nitrate transporter component, nrtA; nitrate transporter component complement(2932553..2933980) Alkalilimnicola ehrlichii MLHE-1 4270298 YP_743420.1 CDS Mlg_2590 NC_008340.1 2934251 2934832 R PFAM: ANTAR domain protein; KEGG: csa:Csal_1132 response regulator receiver (CheY-like) and ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein complement(2934251..2934832) Alkalilimnicola ehrlichii MLHE-1 4269223 YP_743421.1 CDS Mlg_2591 NC_008340.1 2935100 2936749 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 2935100..2936749 Alkalilimnicola ehrlichii MLHE-1 4269224 YP_743422.1 CDS Mlg_2592 NC_008340.1 2936829 2937437 D hypothetical protein 2936829..2937437 Alkalilimnicola ehrlichii MLHE-1 4269225 YP_743423.1 CDS Mlg_2593 NC_008340.1 2937474 2938517 R PFAM: cobalamin synthesis protein, P47K; KEGG: ypm:YP1312 cobalamin synthesis protein; cobalamin synthesis protein, P47K complement(2937474..2938517) Alkalilimnicola ehrlichii MLHE-1 4269226 YP_743424.1 CDS Mlg_2594 NC_008340.1 2938869 2939114 R PFAM: phosphopantetheine-binding; KEGG: bte:BTH_II0931 hypothetical protein; phosphopantetheine-binding complement(2938869..2939114) Alkalilimnicola ehrlichii MLHE-1 4269227 YP_743425.1 CDS Mlg_2595 NC_008340.1 2939111 2940436 R PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: rfr:Rfer_0385 catalytic domain of components of various dehydrogenase complexes; dehydrogenase catalytic domain-containing protein complement(2939111..2940436) Alkalilimnicola ehrlichii MLHE-1 4269228 YP_743426.1 CDS Mlg_2596 NC_008340.1 2940433 2942442 R PFAM: dehydrogenase, E1 component; Transketolase, central region; Transketolase domain protein; KEGG: jan:Jann_3081 dehydrogenase, E1 component; dehydrogenase, E1 component complement(2940433..2942442) Alkalilimnicola ehrlichii MLHE-1 4269229 YP_743427.1 CDS Mlg_2597 NC_008340.1 2942432 2944198 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(2942432..2944198) Alkalilimnicola ehrlichii MLHE-1 4269230 YP_743428.1 CDS Mlg_2598 NC_008340.1 2944417 2945013 D PFAM: Abortive infection protein; KEGG: noc:Noc_1193 abortive infection protein; abortive infection protein 2944417..2945013 Alkalilimnicola ehrlichii MLHE-1 4269231 YP_743429.1 CDS Mlg_2599 NC_008340.1 2945050 2945727 R PFAM: nitroreductase; KEGG: pab:PAB0163 NADH oxidase; nitroreductase complement(2945050..2945727) Alkalilimnicola ehrlichii MLHE-1 4269232 YP_743430.1 CDS Mlg_2600 NC_008340.1 2945940 2946305 D KEGG: csa:Csal_2464 hypothetical protein; hypothetical protein 2945940..2946305 Alkalilimnicola ehrlichii MLHE-1 4269233 YP_743431.1 CDS prpD NC_008340.1 2946388 2947842 R functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase complement(2946388..2947842) Alkalilimnicola ehrlichii MLHE-1 4269234 YP_743432.1 CDS Mlg_2602 NC_008340.1 2948461 2949639 R TIGRFAM: AcnD-accessory protein PrpF; PFAM: protein of unknown function DUF453; KEGG: rme:Rmet_1584 PrpF, AcnD-accessory; methylitaconate delta2-delta3-isomerase complement(2948461..2949639) Alkalilimnicola ehrlichii MLHE-1 4269235 YP_743433.1 CDS Mlg_2603 NC_008340.1 2949762 2952380 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(2949762..2952380) Alkalilimnicola ehrlichii MLHE-1 4269236 YP_743434.1 CDS Mlg_2604 NC_008340.1 2952736 2953860 R KEGG: csa:Csal_2420 2-methylcitrate synthase/citrate synthase II; TIGRFAM: 2-methylcitrate synthase/citrate synthase II; PFAM: Citrate synthase; 2-methylcitrate synthase complement(2952736..2953860) Alkalilimnicola ehrlichii MLHE-1 4269237 YP_743435.1 CDS prpB NC_008340.1 2954067 2954948 R catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase complement(2954067..2954948) Alkalilimnicola ehrlichii MLHE-1 4269238 YP_743436.1 CDS Mlg_2606 NC_008340.1 2955011 2955997 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: noc:Noc_2046 zinc-containing alcohol dehydrogenase superfamily; alcohol dehydrogenase complement(2955011..2955997) Alkalilimnicola ehrlichii MLHE-1 4269239 YP_743437.1 CDS Mlg_2607 NC_008340.1 2956295 2957719 R TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: hch:HCH_04743 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase complement(2956295..2957719) Alkalilimnicola ehrlichii MLHE-1 4269516 YP_743438.1 CDS Mlg_2608 NC_008340.1 2957764 2959032 R TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: pae:PA1586 dihydrolipoamide succinyltransferase (E2 subunit); 2-oxoglutarate dehydrogenase E2 complement(2957764..2959032) Alkalilimnicola ehrlichii MLHE-1 4269517 YP_743439.1 CDS sucA NC_008340.1 2959122 2961947 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 complement(2959122..2961947) Alkalilimnicola ehrlichii MLHE-1 4269518 YP_743440.1 CDS Mlg_2610 NC_008340.1 2962555 2963343 R TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: csa:Csal_0591 sec-independent protein translocase TatC; Sec-independent protein translocase TatC complement(2962555..2963343) Alkalilimnicola ehrlichii MLHE-1 4269519 YP_743441.1 CDS Mlg_2611 NC_008340.1 2963340 2963879 R TIGRFAM: twin-arginine translocation protein, TatB subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: vfi:VF0050 sec-independent protein translocase TatB; twin-arginine translocation protein, TatB subunit complement(2963340..2963879) Alkalilimnicola ehrlichii MLHE-1 4269520 YP_743442.1 CDS Mlg_2612 NC_008340.1 2963909 2964181 R TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: hch:HCH_01076 sec-independent protein secretion pathway components; twin arginine-targeting protein translocase complement(2963909..2964181) Alkalilimnicola ehrlichii MLHE-1 4269521 YP_743443.1 CDS hisE NC_008340.1 2964215 2964544 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase complement(2964215..2964544) Alkalilimnicola ehrlichii MLHE-1 4269522 YP_743444.1 CDS Mlg_2614 NC_008340.1 2964541 2965338 R TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis; KEGG: noc:Noc_3054 imidazole glycerol phosphate synthase subunit HisF; imidazole glycerol phosphate synthase subunit HisF complement(2964541..2965338) Alkalilimnicola ehrlichii MLHE-1 4269523 YP_743445.1 CDS Mlg_2615 NC_008340.1 2965335 2966093 R TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis; KEGG: sde:Sde_0489 response regulator receiver domain protein (CheY-like); 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(2965335..2966093) Alkalilimnicola ehrlichii MLHE-1 4269524 YP_743446.1 CDS Mlg_2616 NC_008340.1 2966098 2966742 R TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: ppu:PP0290 glutamine amidotransferase HisH; imidazole glycerol phosphate synthase subunit HisH complement(2966098..2966742) Alkalilimnicola ehrlichii MLHE-1 4269525 YP_743447.1 CDS Mlg_2617 NC_008340.1 2966742 2967335 R PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: pfo:Pfl_0323 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase complement(2966742..2967335) Alkalilimnicola ehrlichii MLHE-1 4269526 YP_743448.1 CDS Mlg_2618 NC_008340.1 2967462 2967914 R PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: mca:MCA1743 D-tyrosyl-tRNA deacylase; D-tyrosyl-tRNA(Tyr) deacylase complement(2967462..2967914) Alkalilimnicola ehrlichii MLHE-1 4269527 YP_743449.1 CDS Mlg_2619 NC_008340.1 2968047 2968604 R hypothetical protein complement(2968047..2968604) Alkalilimnicola ehrlichii MLHE-1 4269528 YP_743450.1 CDS Mlg_2620 NC_008340.1 2968740 2969666 D PFAM: lipid A biosynthesis acyltransferase; KEGG: tcx:Tcr_0183 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 2968740..2969666 Alkalilimnicola ehrlichii MLHE-1 4269529 YP_743451.1 CDS Mlg_2621 NC_008340.1 2969683 2970006 R PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: tbd:Tbd_0023 hypothetical protein with TPR repeat; TPR repeat-containing protein complement(2969683..2970006) Alkalilimnicola ehrlichii MLHE-1 4269530 YP_743452.1 CDS trkA NC_008340.1 2970041 2971417 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component complement(2970041..2971417) Alkalilimnicola ehrlichii MLHE-1 4269531 YP_743453.1 CDS Mlg_2623 NC_008340.1 2971431 2972801 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; KEGG: mca:MCA2848 nitrogen regulation protein NtrX; Fis family transcriptional regulator complement(2971431..2972801) Alkalilimnicola ehrlichii MLHE-1 4269532 YP_743454.1 CDS Mlg_2624 NC_008340.1 2972808 2974997 R TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: noc:Noc_3018 signal transduction histidine kinase, NtrY; multi-sensor signal transduction histidine kinase complement(2972808..2974997) Alkalilimnicola ehrlichii MLHE-1 4269533 YP_743455.1 CDS Mlg_2625 NC_008340.1 2974979 2975569 R KEGG: mca:MCA2846 hypothetical protein; hypothetical protein complement(2974979..2975569) Alkalilimnicola ehrlichii MLHE-1 4270670 YP_743456.1 CDS Mlg_2626 NC_008340.1 2975566 2976879 R TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: pae:PA0017 Sun protein; sun protein complement(2975566..2976879) Alkalilimnicola ehrlichii MLHE-1 4270671 YP_743457.1 CDS Mlg_2627 NC_008340.1 2976883 2977827 R TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: mca:MCA2844 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(2976883..2977827) Alkalilimnicola ehrlichii MLHE-1 4270672 YP_743458.1 CDS def NC_008340.1 2977824 2978360 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(2977824..2978360) Alkalilimnicola ehrlichii MLHE-1 4270673 YP_743459.1 CDS Mlg_2629 NC_008340.1 2978528 2979544 D PFAM: Peptidoglycan-binding LysM; KEGG: hch:HCH_00031 uncharacterized protein containing LysM domain; peptidoglycan-binding protein LysM 2978528..2979544 Alkalilimnicola ehrlichii MLHE-1 4270674 YP_743460.1 CDS Mlg_2630 NC_008340.1 2979568 2980707 D TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: noc:Noc_3012 smf protein; DNA protecting protein DprA 2979568..2980707 Alkalilimnicola ehrlichii MLHE-1 4270675 YP_743461.1 CDS Mlg_2631 NC_008340.1 2980707 2981180 D PFAM: protein of unknown function DUF494; KEGG: xoo:XOO0582 Smg; hypothetical protein 2980707..2981180 Alkalilimnicola ehrlichii MLHE-1 4270676 YP_743462.1 CDS Mlg_2632 NC_008340.1 2981243 2983636 D decatenates replicating daughter chromosomes; DNA topoisomerase I 2981243..2983636 Alkalilimnicola ehrlichii MLHE-1 4270677 YP_743463.1 CDS Mlg_2633 NC_008340.1 2983713 2984285 D PFAM: SUA5/yciO/yrdC, N-terminal domain; KEGG: csa:Csal_2864 SUA5/YciO/YrdC-like protein; SUA5/yciO/yrdC-like protein 2983713..2984285 Alkalilimnicola ehrlichii MLHE-1 4270678 YP_743464.1 CDS Mlg_2634 NC_008340.1 2984946 2985860 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2984946..2985860 Alkalilimnicola ehrlichii MLHE-1 4270679 YP_743465.1 CDS Mlg_2635 NC_008340.1 2985879 2986334 D PFAM: globin; KEGG: bmb:BruAb2_0335 hypothetical protein; globin 2985879..2986334 Alkalilimnicola ehrlichii MLHE-1 4270680 YP_743466.1 CDS Mlg_2636 NC_008340.1 2986341 2987342 R PFAM: Inositol phosphatase/fructose-1,6-bisphosphatase; KEGG: rfr:Rfer_2704 inositol phosphatase/fructose-1,6-bisphosphatase; D-fructose 1,6-bisphosphatase complement(2986341..2987342) Alkalilimnicola ehrlichii MLHE-1 4270681 YP_743467.1 CDS Mlg_2637 NC_008340.1 2987446 2988693 R PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; KEGG: csa:Csal_0018 three-deoxy-D-manno-octulosonic-acid transferase-like protein; 3-deoxy-D-manno-octulosonic-acid transferase complement(2987446..2988693) Alkalilimnicola ehrlichii MLHE-1 4270682 YP_743468.1 CDS Mlg_2638 NC_008340.1 2988976 2989899 R TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: pfo:Pfl_1696 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; lipid A biosynthesis lauroyl acyltransferase complement(2988976..2989899) Alkalilimnicola ehrlichii MLHE-1 4270683 YP_743469.1 CDS Mlg_2639 NC_008340.1 2989944 2991329 R TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: mca:MCA1277 outer membrane protein TolC; TolC family type I secretion outer membrane protein complement(2989944..2991329) Alkalilimnicola ehrlichii MLHE-1 4270684 YP_743470.1 CDS Mlg_2640 NC_008340.1 2991352 2992014 R PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; methyltransferase small; Methyltransferase type 11; Methyltransferase type 12; KEGG: rme:Rmet_2709 protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase complement(2991352..2992014) Alkalilimnicola ehrlichii MLHE-1 4270685 YP_743471.1 CDS Mlg_2641 NC_008340.1 2992317 2992553 D PFAM: ribosomal protein L28; KEGG: pcr:Pcryo_1989 ribosomal protein L28; 50S ribosomal protein L28 2992317..2992553 Alkalilimnicola ehrlichii MLHE-1 4270686 YP_743472.1 CDS Mlg_2642 NC_008340.1 2992569 2992724 D PFAM: ribosomal protein L33; KEGG: csa:Csal_2970 ribosomal protein L33; 50S ribosomal protein L33 2992569..2992724 Alkalilimnicola ehrlichii MLHE-1 4268532 YP_743473.1 CDS Mlg_2643 NC_008340.1 2992801 2993256 R PFAM: protein of unknown function DUF411; KEGG: vch:VC2216 hypothetical protein; hypothetical protein complement(2992801..2993256) Alkalilimnicola ehrlichii MLHE-1 4268533 YP_743474.1 CDS Mlg_2644 NC_008340.1 2993351 2995306 R PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase domain protein; KEGG: pca:Pcar_3103 N-methylhydantoinase A; 5-oxoprolinase complement(2993351..2995306) Alkalilimnicola ehrlichii MLHE-1 4268534 YP_743475.1 CDS Mlg_2645 NC_008340.1 2995363 2996340 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mca:MCA3078 ABC transporter, ATP-binding protein; ABC transporter-like protein 2995363..2996340 Alkalilimnicola ehrlichii MLHE-1 4268535 YP_743476.1 CDS Mlg_2646 NC_008340.1 2996337 2997089 D KEGG: noc:Noc_2645 ABC transporter, permease; ABC transporter, permease 2996337..2997089 Alkalilimnicola ehrlichii MLHE-1 4268536 YP_743477.1 CDS Mlg_2647 NC_008340.1 2997101 2998414 D KEGG: mca:MCA3076 hypothetical protein; hypothetical protein 2997101..2998414 Alkalilimnicola ehrlichii MLHE-1 4268537 YP_743478.1 CDS Mlg_2648 NC_008340.1 2998414 2998914 D KEGG: noc:Noc_2647 hypothetical protein; hypothetical protein 2998414..2998914 Alkalilimnicola ehrlichii MLHE-1 4268538 YP_743479.1 CDS Mlg_2649 NC_008340.1 2998948 2999781 D KEGG: mca:MCA3072 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycolase; formamidopyrimidine-DNA glycosylase/DNA-(apurinic or apyrimidinic site) lyase 2998948..2999781 Alkalilimnicola ehrlichii MLHE-1 4268539 YP_743480.1 CDS Mlg_2650 NC_008340.1 2999792 3001453 R PFAM: AMP-dependent synthetase and ligase; KEGG: dps:DP2097 probable acetyl-CoA synthetase; AMP-dependent synthetase/ligase complement(2999792..3001453) Alkalilimnicola ehrlichii MLHE-1 4268540 YP_743481.1 CDS Mlg_2651 NC_008340.1 3001624 3002691 D PFAM: permease; KEGG: cps:CPS_4074 permease; permease 3001624..3002691 Alkalilimnicola ehrlichii MLHE-1 4268541 YP_743482.1 CDS Mlg_2652 NC_008340.1 3002632 3004311 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sde:Sde_0078 GGDEF domain protein; diguanylate cyclase complement(3002632..3004311) Alkalilimnicola ehrlichii MLHE-1 4268542 YP_743483.1 CDS Mlg_2653 NC_008340.1 3004477 3005670 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb2752 FOG: GGDEF domain; diguanylate cyclase 3004477..3005670 Alkalilimnicola ehrlichii MLHE-1 4268543 YP_743484.1 CDS Mlg_2654 NC_008340.1 3005680 3007341 R KEGG: noc:Noc_0769 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 1 complement(3005680..3007341) Alkalilimnicola ehrlichii MLHE-1 4268544 YP_743485.1 CDS coaD NC_008340.1 3007344 3007868 R Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase complement(3007344..3007868) Alkalilimnicola ehrlichii MLHE-1 4268545 YP_743486.1 CDS Mlg_2656 NC_008340.1 3007908 3008486 R TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein 95; methyltransferase small; KEGG: noc:Noc_1931 conserved hypothetical protein 95; methyltransferase complement(3007908..3008486) Alkalilimnicola ehrlichii MLHE-1 4268546 YP_743487.1 CDS Mlg_2657 NC_008340.1 3008483 3009928 R PFAM: peptidase M16 domain protein; KEGG: mca:MCA0064 hypothetical protein; peptidase M16 domain-containing protein complement(3008483..3009928) Alkalilimnicola ehrlichii MLHE-1 4268547 YP_743488.1 CDS Mlg_2658 NC_008340.1 3009925 3011307 R PFAM: peptidase M16 domain protein; KEGG: mca:MCA0063 peptidase, M16 family; peptidase M16 domain-containing protein complement(3009925..3011307) Alkalilimnicola ehrlichii MLHE-1 4268548 YP_743489.1 CDS Mlg_2659 NC_008340.1 3011497 3012666 D KEGG: csa:Csal_2989 signal recognition particle-docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 3011497..3012666 Alkalilimnicola ehrlichii MLHE-1 4268549 YP_743490.1 CDS Mlg_2660 NC_008340.1 3012663 3013337 D KEGG: hch:HCH_00573 predicted ATPase involved in cell division; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 3012663..3013337 Alkalilimnicola ehrlichii MLHE-1 4268793 YP_743491.1 CDS Mlg_2661 NC_008340.1 3013337 3014284 D PFAM: protein of unknown function DUF214; KEGG: hch:HCH_00574 cell division protein; cell division protein FtsX 3013337..3014284 Alkalilimnicola ehrlichii MLHE-1 4268794 YP_743492.1 CDS Mlg_2662 NC_008340.1 3014489 3015346 D TIGRFAM: RNA polymerase sigma factor RpoH; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: pae:PA0376 sigma factor RpoH; RNA polymerase sigma-32 subunit RpoH 3014489..3015346 Alkalilimnicola ehrlichii MLHE-1 4268795 YP_743493.1 CDS Mlg_2663 NC_008340.1 3015450 3015671 R hypothetical protein complement(3015450..3015671) Alkalilimnicola ehrlichii MLHE-1 4268796 YP_743494.1 CDS radC NC_008340.1 3015715 3016389 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(3015715..3016389) Alkalilimnicola ehrlichii MLHE-1 4268797 YP_743495.1 CDS aspS NC_008340.1 3016787 3018565 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 3016787..3018565 Alkalilimnicola ehrlichii MLHE-1 4268798 YP_743496.1 CDS Mlg_2666 NC_008340.1 3018626 3019339 D PFAM: Ankyrin; KEGG: xcv:XCV0710 hypothetical protein; ankyrin 3018626..3019339 Alkalilimnicola ehrlichii MLHE-1 4268799 YP_743497.1 CDS Mlg_2667 NC_008340.1 3019405 3020712 R PFAM: TPR repeat-containing protein; HemY domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cbu:CBU_2081 HemY protein; HemY domain-containing protein complement(3019405..3020712) Alkalilimnicola ehrlichii MLHE-1 4268800 YP_743498.1 CDS Mlg_2668 NC_008340.1 3020731 3021942 R PFAM: protein of unknown function DUF513, hemX; KEGG: noc:Noc_0504 protein of unknown function DUF513, HemX; hypothetical protein complement(3020731..3021942) Alkalilimnicola ehrlichii MLHE-1 4268801 YP_743499.1 CDS Mlg_2669 NC_008340.1 3021949 3022734 R PFAM: Uroporphyrinogen III synthase HEM4; KEGG: neu:NE0591 uroporphyrinogen III synthase HEM4; uroporphyrinogen-III synthase complement(3021949..3022734) Alkalilimnicola ehrlichii MLHE-1 4268802 YP_743500.1 CDS hemC NC_008340.1 3022737 3023663 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(3022737..3023663) Alkalilimnicola ehrlichii MLHE-1 4268803 YP_743501.1 CDS Mlg_2671 NC_008340.1 3023772 3024503 R PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: psp:PSPPH_0069 alginate biosynthesis regulatory protein AlgR; response regulator receiver protein complement(3023772..3024503) Alkalilimnicola ehrlichii MLHE-1 4268804 YP_743502.1 CDS Mlg_2672 NC_008340.1 3024507 3025547 R PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase internal region; KEGG: psp:PSPPH_0070 sensor histidine kinase FimS; sensory transduction protein kinase AlgZ complement(3024507..3025547) Alkalilimnicola ehrlichii MLHE-1 4268805 YP_743503.1 CDS Mlg_2673 NC_008340.1 3025681 3027087 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 3025681..3027087 Alkalilimnicola ehrlichii MLHE-1 4268806 YP_743504.1 CDS Mlg_2674 NC_008340.1 3027388 3027888 R PFAM: CBS domain containing protein; KEGG: ppr:PBPRA1175 hypothetical protein; signal transduction protein complement(3027388..3027888) Alkalilimnicola ehrlichii MLHE-1 4268807 YP_743505.1 CDS Mlg_2675 NC_008340.1 3028006 3030528 D KEGG: mag:amb1214 predicted signal transduction protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 3028006..3030528 Alkalilimnicola ehrlichii MLHE-1 4268808 YP_743506.1 CDS Mlg_2676 NC_008340.1 3030615 3030818 R PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: ade:Adeh_0252 cold-shock DNA-binding domain protein; cold-shock DNA-binding protein family protein complement(3030615..3030818) Alkalilimnicola ehrlichii MLHE-1 4268809 YP_743507.1 CDS Mlg_2677 NC_008340.1 3031106 3032089 D hypothetical protein 3031106..3032089 Alkalilimnicola ehrlichii MLHE-1 4269552 YP_743508.1 CDS Mlg_2678 NC_008340.1 3032302 3033309 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: eba:ebA1639 predicted nucleoside-diphosphate-sugar epimerase; NAD-dependent epimerase/dehydratase 3032302..3033309 Alkalilimnicola ehrlichii MLHE-1 4269553 YP_743509.1 CDS Mlg_2679 NC_008340.1 3033708 3035105 D PFAM: major facilitator superfamily MFS_1; KEGG: csa:Csal_2143 major facilitator superfamily MFS_1; major facilitator transporter 3033708..3035105 Alkalilimnicola ehrlichii MLHE-1 4269554 YP_743510.1 CDS Mlg_2680 NC_008340.1 3035346 3035966 D KEGG: csa:Csal_2599 beta-lactamase-like protein; beta-lactamase-like protein 3035346..3035966 Alkalilimnicola ehrlichii MLHE-1 4269555 YP_743511.1 CDS Mlg_2681 NC_008340.1 3035976 3037223 R PFAM: peptidase M42 family protein; KEGG: dge:Dgeo_1994 peptidase M42; peptidase M42 family protein complement(3035976..3037223) Alkalilimnicola ehrlichii MLHE-1 4269556 YP_743512.1 CDS Mlg_2682 NC_008340.1 3037765 3039360 D Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 3037765..3039360 Alkalilimnicola ehrlichii MLHE-1 4269557 YP_743513.1 CDS Mlg_2683 NC_008340.1 3039469 3042540 R KEGG: rfr:Rfer_1983 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase complement(3039469..3042540) Alkalilimnicola ehrlichii MLHE-1 4269558 YP_743514.1 CDS Mlg_2684 NC_008340.1 3042569 3043492 R KEGG: dvu:DVU0120 ABC transporter, substrate-binding protein; ABC transporter, substrate-binding protein complement(3042569..3043492) Alkalilimnicola ehrlichii MLHE-1 4269559 YP_743515.1 CDS Mlg_2685 NC_008340.1 3043584 3044171 R KEGG: ilo:IL1543 hypothetical protein; hypothetical protein complement(3043584..3044171) Alkalilimnicola ehrlichii MLHE-1 4269560 YP_743516.1 CDS Mlg_2686 NC_008340.1 3044406 3045569 D PFAM: regulatory protein, LuxR; KEGG: bur:Bcep18194_B0664 transcriptional regulator, LuxR family; LuxR family transcriptional regulator 3044406..3045569 Alkalilimnicola ehrlichii MLHE-1 4269562 YP_743517.1 CDS Mlg_2687 NC_008340.1 3045707 3048172 D PFAM: regulator of chromosome condensation, RCC1; KEGG: gsu:GSU1251 BNR repeat domain protein; regulator of chromosome condensation, RCC1 3045707..3048172 Alkalilimnicola ehrlichii MLHE-1 4269563 YP_743518.1 CDS Mlg_2688 NC_008340.1 3048322 3050778 D PFAM: regulator of chromosome condensation, RCC1; KEGG: gsu:GSU1251 BNR repeat domain protein; regulator of chromosome condensation, RCC1 3048322..3050778 Alkalilimnicola ehrlichii MLHE-1 4269564 YP_743519.1 CDS Mlg_2689 NC_008340.1 3050878 3051393 D TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; KEGG: csa:Csal_1919 molybdopterin binding protein; molybdenum cofactor biosynthesis protein B 3050878..3051393 Alkalilimnicola ehrlichii MLHE-1 4269565 YP_743520.1 CDS Mlg_2690 NC_008340.1 3051474 3052595 D PFAM: Squalene/phytoene synthase; KEGG: neu:NE1958 squalene and phytoene synthase; farnesyl-diphosphate farnesyltransferase 3051474..3052595 Alkalilimnicola ehrlichii MLHE-1 4269566 YP_743521.1 CDS Mlg_2691 NC_008340.1 3052599 3053480 D PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: syf:Synpcc7942_1985 hypothetical protein; fructosamine kinase 3052599..3053480 Alkalilimnicola ehrlichii MLHE-1 4269567 YP_743522.1 CDS Mlg_2692 NC_008340.1 3053481 3054101 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sme:SMa0279 hypothetical protein; type 11 methyltransferase complement(3053481..3054101) Alkalilimnicola ehrlichii MLHE-1 4269568 YP_743523.1 CDS Mlg_2693 NC_008340.1 3054205 3054699 R KEGG: gvi:gll1070 unknown protein; hypothetical protein complement(3054205..3054699) Alkalilimnicola ehrlichii MLHE-1 4269936 YP_743524.1 CDS Mlg_2694 NC_008340.1 3054897 3056996 D PFAM: AsmA family protein; KEGG: noc:Noc_2265 conserved hypothetical protein, AsmA; AsmA family protein 3054897..3056996 Alkalilimnicola ehrlichii MLHE-1 4269937 YP_743525.1 CDS Mlg_2695 NC_008340.1 3056996 3058081 D KEGG: noc:Noc_2267 A/G-specific adenine glycosylase MutY; TIGRFAM: A/G-specific adenine glycosylase; PFAM: NUDIX hydrolase; helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; A/G-specific adenine glycosylase 3056996..3058081 Alkalilimnicola ehrlichii MLHE-1 4269938 YP_743526.1 CDS Mlg_2696 NC_008340.1 3058078 3058344 D PFAM: Fe(II) trafficking protein YggX; KEGG: noc:Noc_2268 Fe(II) trafficking protein YggX; hypothetical protein 3058078..3058344 Alkalilimnicola ehrlichii MLHE-1 4269939 YP_743527.1 CDS Mlg_2697 NC_008340.1 3058564 3059280 D TIGRFAM: exsB protein; PFAM: ExsB family protein; KEGG: gox:GOX1542 aluminum resistance protein; exoenzyme S synthesis protein B 3058564..3059280 Alkalilimnicola ehrlichii MLHE-1 4269941 YP_743528.1 CDS Mlg_2698 NC_008340.1 3059338 3062229 D PFAM: glutamate-ammonia ligase adenylyltransferase; KEGG: noc:Noc_0135 glutamate-ammonia-ligase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 3059338..3062229 Alkalilimnicola ehrlichii MLHE-1 4269942 YP_743529.1 CDS Mlg_2699 NC_008340.1 3062318 3063238 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 3062318..3063238 Alkalilimnicola ehrlichii MLHE-1 4269943 YP_743530.1 CDS Mlg_2700 NC_008340.1 3063290 3063556 R hypothetical protein complement(3063290..3063556) Alkalilimnicola ehrlichii MLHE-1 4269944 YP_743531.1 CDS Mlg_2701 NC_008340.1 3063606 3065441 R PFAM: Na+/Pi-cotransporter; KEGG: tdn:Tmden_1943 Na+/Pi-cotransporter; Na+/Pi-cotransporter complement(3063606..3065441) Alkalilimnicola ehrlichii MLHE-1 4269945 YP_743532.1 CDS Mlg_2702 NC_008340.1 3065578 3068730 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the proteins from this group do not and in addition appear to have a truncated C-terminal domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(3065578..3068730) Alkalilimnicola ehrlichii MLHE-1 4269946 YP_743533.1 CDS Mlg_2703 NC_008340.1 3068793 3070124 D KEGG: gsu:GSU1615 hypothetical protein; hypothetical protein 3068793..3070124 Alkalilimnicola ehrlichii MLHE-1 4269947 YP_743534.1 CDS Mlg_2704 NC_008340.1 3070346 3071065 D hypothetical protein 3070346..3071065 Alkalilimnicola ehrlichii MLHE-1 4269948 YP_743535.1 CDS Mlg_2705 NC_008340.1 3071239 3071841 D hypothetical protein 3071239..3071841 Alkalilimnicola ehrlichii MLHE-1 4269949 YP_743536.1 CDS Mlg_2706 NC_008340.1 3071915 3073099 R KEGG: reu:Reut_B4738 thiolase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; acetyl-CoA acetyltransferase complement(3071915..3073099) Alkalilimnicola ehrlichii MLHE-1 4269950 YP_743537.1 CDS Mlg_2707 NC_008340.1 3073235 3074074 R PFAM: UspA domain protein; KEGG: tko:TK2034 universal stress protein; UspA domain-containing protein complement(3073235..3074074) Alkalilimnicola ehrlichii MLHE-1 4269951 YP_743538.1 CDS Mlg_2708 NC_008340.1 3074105 3074425 R KEGG: sru:SRU_2459 hypothetical protein; hypothetical protein complement(3074105..3074425) Alkalilimnicola ehrlichii MLHE-1 4269499 YP_743539.1 CDS Mlg_2709 NC_008340.1 3074422 3075537 R PFAM: Bile acid:sodium symporter; KEGG: sru:SRU_2460 hypothetical protein; bile acid:sodium symporter complement(3074422..3075537) Alkalilimnicola ehrlichii MLHE-1 4269500 YP_743540.1 CDS Mlg_2710 NC_008340.1 3075534 3077249 R KEGG: rba:RB9551 ArsA-catalytic subunit of arsenic oxyanion-translocating ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase; arsenite-activated ATPase ArsA complement(3075534..3077249) Alkalilimnicola ehrlichii MLHE-1 4269501 YP_743541.1 CDS Mlg_2711 NC_008340.1 3077358 3077735 R PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: mfa:Mfla_1492 arsenical resistance operon trans-acting repressor ArsD; arsenical resistance operon trans-acting repressor ArsD complement(3077358..3077735) Alkalilimnicola ehrlichii MLHE-1 4269502 YP_743542.1 CDS Mlg_2712 NC_008340.1 3077810 3078232 R PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: gka:GK0589 arsenate reductase; protein tyrosine phosphatase complement(3077810..3078232) Alkalilimnicola ehrlichii MLHE-1 4269503 YP_743543.1 CDS Mlg_2713 NC_008340.1 3078251 3078595 R PFAM: regulatory protein, ArsR; KEGG: hch:HCH_04651 predicted transcriptional regulator; ArsR family transcriptional regulator complement(3078251..3078595) Alkalilimnicola ehrlichii MLHE-1 4269504 YP_743544.1 CDS Mlg_2714 NC_008340.1 3078719 3079390 D PFAM: NADPH-dependent FMN reductase; KEGG: ilo:IL2128 predicted flavoprotein; NADPH-dependent FMN reductase 3078719..3079390 Alkalilimnicola ehrlichii MLHE-1 4269505 YP_743545.1 CDS Mlg_2715 NC_008340.1 3079498 3080466 D KEGG: sco:SCO4963 ABC transporter ATP-binding protein; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; daunorubicin resistance ABC transporter ATPase subunit 3079498..3080466 Alkalilimnicola ehrlichii MLHE-1 4269506 YP_743546.1 CDS Mlg_2716 NC_008340.1 3080463 3081227 D PFAM: ABC-2 type transporter; KEGG: ade:Adeh_3916 ABC transporter, inner membrane subunit; ABC-2 type transporter 3080463..3081227 Alkalilimnicola ehrlichii MLHE-1 4269507 YP_743547.1 CDS Mlg_2717 NC_008340.1 3081328 3081702 R hypothetical protein complement(3081328..3081702) Alkalilimnicola ehrlichii MLHE-1 4269508 YP_743548.1 CDS Mlg_2718 NC_008340.1 3082145 3082519 D KEGG: rfr:Rfer_2852 di-heme cytochrome c; hypothetical protein 3082145..3082519 Alkalilimnicola ehrlichii MLHE-1 4269510 YP_743549.1 CDS Mlg_2719 NC_008340.1 3082948 3084441 D PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: csa:Csal_2764 sulphate transporter; sulfate transporter 3082948..3084441 Alkalilimnicola ehrlichii MLHE-1 4269511 YP_743550.1 CDS Mlg_2720 NC_008340.1 3084479 3085333 D PFAM: UspA domain protein; KEGG: csa:Csal_2763 UspA; UspA domain-containing protein 3084479..3085333 Alkalilimnicola ehrlichii MLHE-1 4269512 YP_743551.1 CDS Mlg_2721 NC_008340.1 3085422 3086480 R TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; PFAM: transferase hexapeptide repeat containing protein; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD; KEGG: pfo:Pfl_1111 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, LpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(3085422..3086480) Alkalilimnicola ehrlichii MLHE-1 4269513 YP_743552.1 CDS Mlg_2722 NC_008340.1 3086771 3087415 D PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: mca:MCA0777 DNA binding response regulator, LuxR family; LuxR family transcriptional regulator 3086771..3087415 Alkalilimnicola ehrlichii MLHE-1 4269514 YP_743553.1 CDS Mlg_2723 NC_008340.1 3087419 3088879 D PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: mfa:Mfla_0814 signal transduction histidine kinase, glucose-6-phosphate specific; glucose-6-phosphate specific signal transduction histidine kinase 3087419..3088879 Alkalilimnicola ehrlichii MLHE-1 4269515 YP_743554.1 CDS Mlg_2724 NC_008340.1 3088799 3090928 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ccr:CC0139 TonB-dependent receptor; TonB-dependent receptor complement(3088799..3090928) Alkalilimnicola ehrlichii MLHE-1 4270978 YP_743555.1 CDS Mlg_2725 NC_008340.1 3091196 3092440 R KEGG: mfa:Mfla_2453 hypothetical protein; hypothetical protein complement(3091196..3092440) Alkalilimnicola ehrlichii MLHE-1 4270979 YP_743556.1 CDS Mlg_2726 NC_008340.1 3093025 3094545 D PFAM: aldehyde dehydrogenase; KEGG: gka:GK0730 aldehyde dehydrogenase; aldehyde dehydrogenase 3093025..3094545 Alkalilimnicola ehrlichii MLHE-1 4270980 YP_743557.1 CDS Mlg_2727 NC_008340.1 3094661 3095041 D PFAM: protein of unknown function DUF779; KEGG: bha:BH0680 hypothetical protein; hypothetical protein 3094661..3095041 Alkalilimnicola ehrlichii MLHE-1 4270981 YP_743558.1 CDS Mlg_2728 NC_008340.1 3095108 3097174 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: csa:Csal_0094 TonB-dependent receptor; TonB-dependent receptor 3095108..3097174 Alkalilimnicola ehrlichii MLHE-1 4270982 YP_743559.1 CDS Mlg_2729 NC_008340.1 3097561 3099369 D PFAM: Pyrrolo-quinoline quinone; KEGG: sil:SPO1508 quinoprotein ethanol dehydrogenase; Pyrrolo-quinoline quinone 3097561..3099369 Alkalilimnicola ehrlichii MLHE-1 4270983 YP_743560.1 CDS Mlg_2730 NC_008340.1 3099470 3099916 D KEGG: sil:SPO1515 cytochrome c550; cytochrome c550 3099470..3099916 Alkalilimnicola ehrlichii MLHE-1 4270984 YP_743561.1 CDS Mlg_2731 NC_008340.1 3099903 3100919 D SMART: extracellular solute-binding protein, family 3; KEGG: dar:Daro_1002 hypothetical protein; extracellular solute-binding protein 3099903..3100919 Alkalilimnicola ehrlichii MLHE-1 4270985 YP_743562.1 CDS Mlg_2732 NC_008340.1 3100952 3101719 D KEGG: pfl:PFL_2219 hypothetical protein; hypothetical protein 3100952..3101719 Alkalilimnicola ehrlichii MLHE-1 4270986 YP_743563.1 CDS Mlg_2733 NC_008340.1 3101716 3102693 D PFAM: beta-lactamase domain protein; KEGG: pfl:PFL_2220 hydrolase; beta-lactamase domain-containing protein 3101716..3102693 Alkalilimnicola ehrlichii MLHE-1 4270987 YP_743564.1 CDS Mlg_2734 NC_008340.1 3102680 3103318 D SMART: Rhodanese domain protein; KEGG: bja:bll6194 hypothetical protein; rhodanese domain-containing protein 3102680..3103318 Alkalilimnicola ehrlichii MLHE-1 4270988 YP_743565.1 CDS Mlg_2735 NC_008340.1 3103328 3103636 D hypothetical protein 3103328..3103636 Alkalilimnicola ehrlichii MLHE-1 4270989 YP_743566.1 CDS Mlg_2736 NC_008340.1 3103832 3105820 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: pae:PA4021 probable transcriptional regulator; Fis family transcriptional regulator 3103832..3105820 Alkalilimnicola ehrlichii MLHE-1 4270990 YP_743567.1 CDS Mlg_2737 NC_008340.1 3105865 3107112 R PFAM: glucose sorbosone dehydrogenase; KEGG: sru:SRU_0451 pyrroloquinoline-quinone glucose dehydrogenase; glucose sorbosone dehydrogenase complement(3105865..3107112) Alkalilimnicola ehrlichii MLHE-1 4270991 YP_743568.1 CDS Mlg_2738 NC_008340.1 3107204 3108010 R KEGG: mag:amb3044 ABC-type tungstate transport system, permease component; tungstate ABC transporter permease complement(3107204..3108010) Alkalilimnicola ehrlichii MLHE-1 4270992 YP_743569.1 CDS Mlg_2739 NC_008340.1 3108071 3108850 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb3045 ABC-type polar amino acid transport system, ATPase component; ABC transporter-like protein complement(3108071..3108850) Alkalilimnicola ehrlichii MLHE-1 4270993 YP_743570.1 CDS Mlg_2740 NC_008340.1 3108853 3109551 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mag:amb3046 ABC-type tungstate transport system, periplasmic component; binding-protein-dependent transport systems inner membrane component complement(3108853..3109551) Alkalilimnicola ehrlichii MLHE-1 4270994 YP_743571.1 CDS Mlg_2741 NC_008340.1 3109733 3109933 R KEGG: gme:Gmet_3124 hypothetical protein; hypothetical protein complement(3109733..3109933) Alkalilimnicola ehrlichii MLHE-1 4270210 YP_743572.1 CDS Mlg_2742 NC_008340.1 3109979 3111352 R KEGG: hch:HCH_05426 hypothetical protein; hypothetical protein complement(3109979..3111352) Alkalilimnicola ehrlichii MLHE-1 4270211 YP_743573.1 CDS Mlg_2743 NC_008340.1 3111358 3112212 R KEGG: ilo:IL0172 probable outer membrane protein; outer membrane protein complement(3111358..3112212) Alkalilimnicola ehrlichii MLHE-1 4270212 YP_743574.1 CDS Mlg_2744 NC_008340.1 3112236 3114818 R KEGG: ilo:IL0173 predicted exporter, RND superfamily; RND efflux transporter complement(3112236..3114818) Alkalilimnicola ehrlichii MLHE-1 4270213 YP_743575.1 CDS Mlg_2745 NC_008340.1 3115020 3115922 D TIGRFAM: DNA binding domain, excisionase; KEGG: mag:amb2274 periplasmic molybdate-binding protein/domain; DNA binding domain-containing protein 3115020..3115922 Alkalilimnicola ehrlichii MLHE-1 4270214 YP_743576.1 CDS Mlg_2746 NC_008340.1 3115940 3116404 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: sde:Sde_0996 single-stranded DNA-binding protein; single-strand binding protein complement(3115940..3116404) Alkalilimnicola ehrlichii MLHE-1 4270215 YP_743577.1 CDS Mlg_2747 NC_008340.1 3116575 3117795 R PFAM: major facilitator superfamily MFS_1; KEGG: noc:Noc_3022 major facilitator superfamily MFS_1; major facilitator transporter complement(3116575..3117795) Alkalilimnicola ehrlichii MLHE-1 4270216 YP_743578.1 CDS Mlg_2748 NC_008340.1 3117911 3120733 D KEGG: mca:MCA2694 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase; excinuclease ABC subunit A 3117911..3120733 Alkalilimnicola ehrlichii MLHE-1 4270217 YP_743579.1 CDS Mlg_2749 NC_008340.1 3120797 3121585 R PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: dde:Dde_1620 glutamine amidotransferases-like; peptidase C26 complement(3120797..3121585) Alkalilimnicola ehrlichii MLHE-1 4270218 YP_743580.1 CDS Mlg_2750 NC_008340.1 3121561 3122586 R KEGG: dde:Dde_1621 hypothetical protein; hypothetical protein complement(3121561..3122586) Alkalilimnicola ehrlichii MLHE-1 4270219 YP_743581.1 CDS rpmE2 NC_008340.1 3122760 3123014 D RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 3122760..3123014 Alkalilimnicola ehrlichii MLHE-1 4270220 YP_743582.1 CDS Mlg_2752 NC_008340.1 3123387 3124685 D KEGG: rru:Rru_A1600 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase 3123387..3124685 Alkalilimnicola ehrlichii MLHE-1 4270221 YP_743583.1 CDS Mlg_2753 NC_008340.1 3124757 3125401 R KEGG: noc:Noc_0245 hypothetical protein; hypothetical protein complement(3124757..3125401) Alkalilimnicola ehrlichii MLHE-1 4270222 YP_743584.1 CDS Mlg_2754 NC_008340.1 3125431 3127833 R KEGG: noc:Noc_0246 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; 1A family penicillin-binding protein complement(3125431..3127833) Alkalilimnicola ehrlichii MLHE-1 4270223 YP_743585.1 CDS Mlg_2755 NC_008340.1 3128016 3129083 D TIGRFAM: type IV pilus assembly protein PilM; KEGG: pfo:Pfl_0405 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 3128016..3129083 Alkalilimnicola ehrlichii MLHE-1 4270224 YP_743586.1 CDS Mlg_2756 NC_008340.1 3129080 3129634 D PFAM: Fimbrial assembly family protein; KEGG: noc:Noc_0248 type 4 fimbrial biogenesis protein PilN; fimbrial assembly family protein 3129080..3129634 Alkalilimnicola ehrlichii MLHE-1 4270225 YP_743587.1 CDS Mlg_2757 NC_008340.1 3129655 3130239 D PFAM: Pilus assembly protein, PilO; KEGG: eba:ebA2264 fimbrial type-IV assembly protein PilO; pilus assembly protein, PilO 3129655..3130239 Alkalilimnicola ehrlichii MLHE-1 4270226 YP_743588.1 CDS Mlg_2758 NC_008340.1 3130242 3130787 D PFAM: Pilus assembly protein, PilQ; KEGG: lpf:lpl0961 tfp pilus assembly protein PilP; pilus assembly protein, PilQ 3130242..3130787 Alkalilimnicola ehrlichii MLHE-1 4270227 YP_743589.1 CDS Mlg_2759 NC_008340.1 3130822 3132906 D TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: noc:Noc_0251 fimbrial assembly protein PilQ precursor; type IV pilus secretin PilQ 3130822..3132906 Alkalilimnicola ehrlichii MLHE-1 4269120 YP_743590.1 CDS Mlg_2760 NC_008340.1 3132974 3134986 D PFAM: Ig domain protein, group 1 domain protein; KEGG: rfr:Rfer_2924 Ig-like, group 1; Ig domain-containing protein 3132974..3134986 Alkalilimnicola ehrlichii MLHE-1 4269121 YP_743591.1 CDS Mlg_2761 NC_008340.1 3135148 3135687 D PFAM: shikimate kinase; KEGG: aci:ACIAD3354 shikimate-kinase; shikimate kinase 3135148..3135687 Alkalilimnicola ehrlichii MLHE-1 4269122 YP_743592.1 CDS Mlg_2762 NC_008340.1 3135684 3136778 D PFAM: 3-dehydroquinate synthase; KEGG: mca:MCA0331 3-dehydroquinate synthase; 3-dehydroquinate synthase 3135684..3136778 Alkalilimnicola ehrlichii MLHE-1 4269123 YP_743593.1 CDS gltB NC_008340.1 3137088 3141563 D catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 3137088..3141563 Alkalilimnicola ehrlichii MLHE-1 4269124 YP_743594.1 CDS gltD NC_008340.1 3141622 3143031 D glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 3141622..3143031 Alkalilimnicola ehrlichii MLHE-1 4269125 YP_743595.1 CDS Mlg_2765 NC_008340.1 3143468 3144565 D KEGG: sde:Sde_2681 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase 3143468..3144565 Alkalilimnicola ehrlichii MLHE-1 4269126 YP_743596.1 CDS Mlg_2766 NC_008340.1 3144597 3145031 D PFAM: NUDIX hydrolase; KEGG: tbd:Tbd_2635 hypothetical protein; NUDIX hydrolase 3144597..3145031 Alkalilimnicola ehrlichii MLHE-1 4269127 YP_743597.1 CDS Mlg_2767 NC_008340.1 3145088 3145564 D PFAM: protein of unknown function DUF1332; KEGG: rfr:Rfer_1818 protein of unknown function DUF1332; hypothetical protein 3145088..3145564 Alkalilimnicola ehrlichii MLHE-1 4269128 YP_743598.1 CDS Mlg_2768 NC_008340.1 3145569 3146138 R TIGRFAM: conserved hypothetical protein; KEGG: sme:SMa2229 hypothetical protein; hypothetical protein complement(3145569..3146138) Alkalilimnicola ehrlichii MLHE-1 4269129 YP_743599.1 CDS Mlg_2769 NC_008340.1 3146305 3147783 R PFAM: NAD(P) transhydrogenase, beta subunit; KEGG: eba:ebA4500 pyridine nucleotide transhydrogenase subunit beta; NAD(P) transhydrogenase subunit beta complement(3146305..3147783) Alkalilimnicola ehrlichii MLHE-1 4269130 YP_743600.1 CDS Mlg_2770 NC_008340.1 3147784 3148098 R KEGG: xoo:XOO3630 pyridine nucleotide transhydrogenase subunit alpha; pyridine nucleotide transhydrogenase subunit alpha complement(3147784..3148098) Alkalilimnicola ehrlichii MLHE-1 4269131 YP_743601.1 CDS Mlg_2771 NC_008340.1 3148095 3149228 R PFAM: alanine dehydrogenase/PNT domain protein; KEGG: eba:ebA4497 pyridine nucleotide transhydrogenase alpha subunit; NAD(P)(+) transhydrogenase complement(3148095..3149228) Alkalilimnicola ehrlichii MLHE-1 4269132 YP_743602.1 CDS Mlg_2772 NC_008340.1 3149669 3150268 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: mca:MCA2596 HNH endonuclease domain protein; HNH endonuclease 3149669..3150268 Alkalilimnicola ehrlichii MLHE-1 4269133 YP_743603.1 CDS Mlg_2773 NC_008340.1 3150276 3150944 R PFAM: Sporulation domain protein; KEGG: pae:PA5052 hypothetical protein; sporulation domain-containing protein complement(3150276..3150944) Alkalilimnicola ehrlichii MLHE-1 4269134 YP_743604.1 CDS argS NC_008340.1 3150947 3152782 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(3150947..3152782) Alkalilimnicola ehrlichii MLHE-1 4269135 YP_743605.1 CDS Mlg_2775 NC_008340.1 3152854 3153921 D PFAM: UMUC domain protein DNA-repair protein; KEGG: sme:SMa2355 DNA polymerase IV; DNA-directed DNA polymerase 3152854..3153921 Alkalilimnicola ehrlichii MLHE-1 4269136 YP_743606.1 CDS Mlg_2776 NC_008340.1 3153913 3154209 R hypothetical protein complement(3153913..3154209) Alkalilimnicola ehrlichii MLHE-1 4269710 YP_743607.1 CDS ruvB NC_008340.1 3154533 3155588 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 3154533..3155588 Alkalilimnicola ehrlichii MLHE-1 4269711 YP_743608.1 CDS Mlg_2778 NC_008340.1 3155585 3156211 D PFAM: class II aldolase/adducin family protein; KEGG: rru:Rru_A0359 class II aldolase/adducin-like; L-fuculose-phosphate aldolase 3155585..3156211 Alkalilimnicola ehrlichii MLHE-1 4269712 YP_743609.1 CDS Mlg_2779 NC_008340.1 3156299 3161149 D PFAM: NAD-glutamate dehydrogenase; KEGG: eba:ebA3619 NAD-glutamate dehydrogenase; glutamate dehydrogenase (NAD) 3156299..3161149 Alkalilimnicola ehrlichii MLHE-1 4269713 YP_743610.1 CDS Mlg_2780 NC_008340.1 3161183 3162343 R PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: tbd:Tbd_1468 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase complement(3161183..3162343) Alkalilimnicola ehrlichii MLHE-1 4269714 YP_743611.1 CDS Mlg_2781 NC_008340.1 3162416 3163201 D PFAM: alpha/beta hydrolase fold; KEGG: csa:Csal_1935 alpha/beta hydrolase; alpha/beta hydrolase 3162416..3163201 Alkalilimnicola ehrlichii MLHE-1 4269715 YP_743612.1 CDS Mlg_2782 NC_008340.1 3163274 3164050 D TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mca:MCA3070 exodeoxyribonuclease III; exodeoxyribonuclease III 3163274..3164050 Alkalilimnicola ehrlichii MLHE-1 4269716 YP_743613.1 CDS Mlg_2783 NC_008340.1 3164057 3164800 D PFAM: lipopolysaccharide biosynthesis; lipopolysaccharide biosynthesis 3164057..3164800 Alkalilimnicola ehrlichii MLHE-1 4269717 YP_743614.1 CDS Mlg_2784 NC_008340.1 3164827 3167232 R PFAM: MscS Mechanosensitive ion channel; KEGG: csa:Csal_3104 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS complement(3164827..3167232) Alkalilimnicola ehrlichii MLHE-1 4269718 YP_743615.1 CDS Mlg_2785 NC_008340.1 3167352 3168779 R PFAM: Malonyl-CoA decarboxylase; KEGG: rpd:RPD_0148 malonyl-CoA decarboxylase; malonyl-CoA decarboxylase complement(3167352..3168779) Alkalilimnicola ehrlichii MLHE-1 4269719 YP_743616.1 CDS Mlg_2786 NC_008340.1 3168776 3170095 R TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sme:SMa0151 hypothetical protein; TRAP dicarboxylate transporter subunit DctM complement(3168776..3170095) Alkalilimnicola ehrlichii MLHE-1 4269720 YP_743617.1 CDS Mlg_2787 NC_008340.1 3170088 3170708 R PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: sme:SMa0155 hypothetical protein; tripartite ATP-independent periplasmic transporter DctQ complement(3170088..3170708) Alkalilimnicola ehrlichii MLHE-1 4269721 YP_743618.1 CDS Mlg_2788 NC_008340.1 3170819 3171847 R PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: sme:SMa0157 hypothetical protein; TRAP dicarboxylate transporter subunit DctP complement(3170819..3171847) Alkalilimnicola ehrlichii MLHE-1 4269722 YP_743619.1 CDS Mlg_2789 NC_008340.1 3172063 3172722 R PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: xcb:XC_0580 transcriptional regulator MdcY family; GntR family transcriptional regulator complement(3172063..3172722) Alkalilimnicola ehrlichii MLHE-1 4269723 YP_743620.1 CDS Mlg_2790 NC_008340.1 3172895 3174433 D catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase 3172895..3174433 Alkalilimnicola ehrlichii MLHE-1 4269724 YP_743621.1 CDS Mlg_2791 NC_008340.1 3174576 3174836 D KEGG: noc:Noc_0304 hypothetical protein; hypothetical protein 3174576..3174836 Alkalilimnicola ehrlichii MLHE-1 4269725 YP_743622.1 CDS Mlg_2792 NC_008340.1 3174861 3175949 D TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; KEGG: mfa:Mfla_0768 lipopolysaccharide heptosyltransferase II; lipopolysaccharide heptosyltransferase II 3174861..3175949 Alkalilimnicola ehrlichii MLHE-1 4269726 YP_743623.1 CDS Mlg_2793 NC_008340.1 3175949 3177082 D PFAM: glycosyl transferase, group 1; KEGG: psb:Psyr_0522 glycosyl transferase, group 1; group 1 glycosyl transferase 3175949..3177082 Alkalilimnicola ehrlichii MLHE-1 4269727 YP_743624.1 CDS Mlg_2794 NC_008340.1 3177087 3177947 D PFAM: lipopolysaccharide kinase; KEGG: mfa:Mfla_0755 lipopolysaccharide kinase; lipopolysaccharide kinase 3177087..3177947 Alkalilimnicola ehrlichii MLHE-1 4269137 YP_743625.1 CDS Mlg_2795 NC_008340.1 3177944 3178789 D Mn2+-dependent serine/threonine protein kinase 3177944..3178789 Alkalilimnicola ehrlichii MLHE-1 4269138 YP_743626.1 CDS Mlg_2796 NC_008340.1 3178786 3179586 D KEGG: sma:SAV5424 serine/threonine protein kinase; Mn2+-dependent serine/threonine protein kinase 3178786..3179586 Alkalilimnicola ehrlichii MLHE-1 4269139 YP_743627.1 CDS Mlg_2797 NC_008340.1 3179640 3180632 D PFAM: glycosyl transferase, family 9; KEGG: gsu:GSU2256 ADP-heptose--LPS heptosyltransferase II; glycosyl transferase 3179640..3180632 Alkalilimnicola ehrlichii MLHE-1 4269140 YP_743628.1 CDS Mlg_2798 NC_008340.1 3180641 3181813 D PFAM: glycosyl transferase, group 1; KEGG: ppu:PP4943 glycosyl transferase; group 1 glycosyl transferase 3180641..3181813 Alkalilimnicola ehrlichii MLHE-1 4269141 YP_743629.1 CDS Mlg_2799 NC_008340.1 3181816 3182901 R KEGG: pha:PSHAa2321 hypothetical protein; hypothetical protein complement(3181816..3182901) Alkalilimnicola ehrlichii MLHE-1 4269142 YP_743630.1 CDS Mlg_2800 NC_008340.1 3182914 3184182 R PFAM: O-antigen polymerase; KEGG: rpa:RPA3948 hypothetical protein; O-antigen polymerase complement(3182914..3184182) Alkalilimnicola ehrlichii MLHE-1 4269143 YP_743631.1 CDS Mlg_2801 NC_008340.1 3184228 3185052 R PFAM: glycosyl transferase, family 2; KEGG: pfo:Pfl_2033 hypothetical protein; glycosyl transferase complement(3184228..3185052) Alkalilimnicola ehrlichii MLHE-1 4269144 YP_743632.1 CDS Mlg_2802 NC_008340.1 3185088 3186041 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mca:MCA1165 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3185088..3186041) Alkalilimnicola ehrlichii MLHE-1 4269145 YP_743633.1 CDS Mlg_2803 NC_008340.1 3186271 3188040 D KEGG: noc:Noc_2675 lipid A export ATP-binding/permease MsbA; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA 3186271..3188040 Alkalilimnicola ehrlichii MLHE-1 4269146 YP_743634.1 CDS Mlg_2804 NC_008340.1 3188070 3188912 R KEGG: bbr:BB1918 hypothetical protein; Mn2+-dependent serine/threonine protein kinase complement(3188070..3188912) Alkalilimnicola ehrlichii MLHE-1 4269147 YP_743635.1 CDS Mlg_2805 NC_008340.1 3189029 3190003 D TIGRFAM: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase; PFAM: lipid A biosynthesis acyltransferase; KEGG: pae:PA3242 probable lauroyl acyltransferase; lipid A biosynthesis lauroyl acyltransferase 3189029..3190003 Alkalilimnicola ehrlichii MLHE-1 4269148 YP_743636.1 CDS Mlg_2806 NC_008340.1 3190011 3191099 D PFAM: glycosyl transferase, family 9; KEGG: xoo:XOO1056 saccharide biosynthesis regulatory protein; glycosyl transferase 3190011..3191099 Alkalilimnicola ehrlichii MLHE-1 4269149 YP_743637.1 CDS Mlg_2807 NC_008340.1 3191110 3191880 R catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase complement(3191110..3191880) Alkalilimnicola ehrlichii MLHE-1 4269150 YP_743638.1 CDS Mlg_2808 NC_008340.1 3191880 3192800 R KEGG: aba:Acid345_2070 hypothetical protein; hypothetical protein complement(3191880..3192800) Alkalilimnicola ehrlichii MLHE-1 4269151 YP_743639.1 CDS Mlg_2809 NC_008340.1 3192816 3193778 R TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: pca:Pcar_0024 ADP-L-glycero-D-mannoheptose-6-epimerase; ADP-glyceromanno-heptose 6-epimerase complement(3192816..3193778) Alkalilimnicola ehrlichii MLHE-1 4269152 YP_743640.1 CDS Mlg_2810 NC_008340.1 3193860 3195293 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(3193860..3195293) Alkalilimnicola ehrlichii MLHE-1 4269153 YP_743641.1 CDS Mlg_2811 NC_008340.1 3195378 3195836 R PFAM: MaoC domain protein dehydratase; KEGG: rru:Rru_A2964 MaoC-like dehydratase; dehydratase complement(3195378..3195836) Alkalilimnicola ehrlichii MLHE-1 4270738 YP_743642.1 CDS Mlg_2812 NC_008340.1 3195944 3197476 R TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: rso:RSc2390 probable cobyric acid synthase; adenosylcobyric acid synthase complement(3195944..3197476) Alkalilimnicola ehrlichii MLHE-1 4270739 YP_743643.1 CDS Mlg_2813 NC_008340.1 3197473 3198768 R PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: rso:RSp0615 probable cobyrinic acid A,C-diamide synthase; hydrogenobyrinic acid a,c-diamide synthase /cobyrinate a,c-diamide synthase complement(3197473..3198768) Alkalilimnicola ehrlichii MLHE-1 4270740 YP_743644.1 CDS Mlg_2814 NC_008340.1 3198765 3199394 R KEGG: pfl:PFL_4431 cob(I)yrinic acid a,c-diamide adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; cob(I)yrinic acid a,c-diamide adenosyltransferase complement(3198765..3199394) Alkalilimnicola ehrlichii MLHE-1 4270741 YP_743645.1 CDS Mlg_2815 NC_008340.1 3199400 3201259 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pae:PA1271 probable tonB-dependent receptor; TonB-dependent receptor complement(3199400..3201259) Alkalilimnicola ehrlichii MLHE-1 4270742 YP_743646.1 CDS cobS NC_008340.1 3201732 3202505 R catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase complement(3201732..3202505) Alkalilimnicola ehrlichii MLHE-1 4270743 YP_743647.1 CDS Mlg_2817 NC_008340.1 3202510 3203130 R PFAM: Phosphoglycerate mutase; KEGG: noc:Noc_1928 phosphoglycerate/bisphosphoglycerate mutase; phosphoglycerate mutase complement(3202510..3203130) Alkalilimnicola ehrlichii MLHE-1 4270744 YP_743648.1 CDS Mlg_2818 NC_008340.1 3203180 3204115 D TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: pfl:PFL_4428 cobalamin biosynthesis protein CobD; adenosylcobinamide-phosphate synthase 3203180..3204115 Alkalilimnicola ehrlichii MLHE-1 4270745 YP_743649.1 CDS Mlg_2819 NC_008340.1 3204088 3205134 D PFAM: aminotransferase, class I and II; KEGG: tbd:Tbd_2715 cobalamin biosynthetic protein CobC; aminotransferase 3204088..3205134 Alkalilimnicola ehrlichii MLHE-1 4270746 YP_743650.1 CDS Mlg_2820 NC_008340.1 3205374 3206309 D PFAM: periplasmic binding protein; KEGG: eba:ebA3688 probable substrate-binding periplasmic (PBP) ABC transporter protein; periplasmic binding protein 3205374..3206309 Alkalilimnicola ehrlichii MLHE-1 4270747 YP_743651.1 CDS Mlg_2821 NC_008340.1 3206316 3207284 D PFAM: transport system permease; KEGG: eba:ebA4019 probable transmembrane ABC transporter protein,permease; transport system permease 3206316..3207284 Alkalilimnicola ehrlichii MLHE-1 4270748 YP_743652.1 CDS Mlg_2822 NC_008340.1 3207286 3208056 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sde:Sde_3202 ATP-binding ABC transporter protein; ABC transporter-like protein 3207286..3208056 Alkalilimnicola ehrlichii MLHE-1 4270749 YP_743653.1 CDS Mlg_2823 NC_008340.1 3208073 3209110 D PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: pae:PA1279 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 3208073..3209110 Alkalilimnicola ehrlichii MLHE-1 4270750 YP_743654.1 CDS Mlg_2824 NC_008340.1 3209103 3209612 R PFAM: cobalbumin biosynthesis enzyme; KEGG: pae:PA1278 cobinamide kinase; adenosylcobinamide kinase complement(3209103..3209612) Alkalilimnicola ehrlichii MLHE-1 4270751 YP_743655.1 CDS Mlg_2825 NC_008340.1 3209612 3210424 R KEGG: hch:HCH_00037 shikimate 5-dehydrogenase; TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; shikimate dehydrogenase complement(3209612..3210424) Alkalilimnicola ehrlichii MLHE-1 4270752 YP_743656.1 CDS Mlg_2826 NC_008340.1 3210510 3211766 R PFAM: phosphate transporter; KEGG: ilo:IL2207 phosphate permease; phosphate transporter complement(3210510..3211766) Alkalilimnicola ehrlichii MLHE-1 4270753 YP_743657.1 CDS Mlg_2827 NC_008340.1 3211784 3212458 R PFAM: protein of unknown function DUF47; KEGG: pae:PA5208 hypothetical protein; hypothetical protein complement(3211784..3212458) Alkalilimnicola ehrlichii MLHE-1 4270754 YP_743658.1 CDS Mlg_2828 NC_008340.1 3212544 3213542 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(3212544..3213542) Alkalilimnicola ehrlichii MLHE-1 4270755 YP_743659.1 CDS Mlg_2829 NC_008340.1 3213539 3213745 R KEGG: bbr:BB3303 hypothetical protein; hypothetical protein complement(3213539..3213745) Alkalilimnicola ehrlichii MLHE-1 4270873 YP_743660.1 CDS Mlg_2830 NC_008340.1 3213910 3214896 D KEGG: mag:amb1288 hypothetical protein; hypothetical protein 3213910..3214896 Alkalilimnicola ehrlichii MLHE-1 4270874 YP_743661.1 CDS Mlg_2831 NC_008340.1 3214889 3215977 D PFAM: OmpA/MotB domain protein; KEGG: rru:Rru_A1073 OmpA/MotB; OmpA/MotB domain-containing protein 3214889..3215977 Alkalilimnicola ehrlichii MLHE-1 4270875 YP_743662.1 CDS Mlg_2832 NC_008340.1 3216026 3216541 D KEGG: gme:Gmet_0792 hypothetical protein; hypothetical protein 3216026..3216541 Alkalilimnicola ehrlichii MLHE-1 4270876 YP_743663.1 CDS Mlg_2833 NC_008340.1 3216597 3217475 R PFAM: phosphoribulokinase/uridine kinase; KEGG: syd:Syncc9605_1864 phosphoribulokinase; phosphoribulokinase complement(3216597..3217475) Alkalilimnicola ehrlichii MLHE-1 4270877 YP_743664.1 CDS Mlg_2834 NC_008340.1 3217537 3218229 R PFAM: ribulose-phosphate 3-epimerase; KEGG: pst:PSPTO0566 ribulose-phosphate 3-epimerase; ribulose-5-phosphate 3-epimerase complement(3217537..3218229) Alkalilimnicola ehrlichii MLHE-1 4270878 YP_743665.1 CDS Mlg_2835 NC_008340.1 3218505 3219434 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: noc:Noc_0334 transcriptional regulatory protein, LysR family; LysR family transcriptional regulator complement(3218505..3219434) Alkalilimnicola ehrlichii MLHE-1 4270879 YP_743666.1 CDS rbcL NC_008340.1 3219578 3220999 D type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase 3219578..3220999 Alkalilimnicola ehrlichii MLHE-1 4270880 YP_743667.1 CDS Mlg_2837 NC_008340.1 3221055 3221411 D PFAM: ribulose bisphosphate carboxylase, small chain; KEGG: mca:MCA2744 ribulose bisphosphate carboxylase, small subunit; ribulose 1,5-bisphosphate carboxylase small subunit 3221055..3221411 Alkalilimnicola ehrlichii MLHE-1 4270881 YP_743668.1 CDS Mlg_2838 NC_008340.1 3221578 3222384 D PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: mca:MCA2746 nitric-oxide reductase NorQ protein; CbbQ/NirQ/NorQ C-terminal domain-containing protein 3221578..3222384 Alkalilimnicola ehrlichii MLHE-1 4270882 YP_743669.1 CDS Mlg_2839 NC_008340.1 3222817 3225198 D PFAM: von Willebrand factor, type A; KEGG: mca:MCA2754 CbbO protein; von Willebrand factor A 3222817..3225198 Alkalilimnicola ehrlichii MLHE-1 4270883 YP_743670.1 CDS Mlg_2840 NC_008340.1 3225417 3226427 D KEGG: bte:BTH_I1196 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase 3225417..3226427 Alkalilimnicola ehrlichii MLHE-1 4270884 YP_743671.1 CDS Mlg_2841 NC_008340.1 3226909 3228906 D KEGG: noc:Noc_2808 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; transketolase 3226909..3228906 Alkalilimnicola ehrlichii MLHE-1 4270885 YP_743672.1 CDS pgk NC_008340.1 3229019 3230197 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3229019..3230197 Alkalilimnicola ehrlichii MLHE-1 4270886 YP_743673.1 CDS Mlg_2843 NC_008340.1 3230261 3231715 D PFAM: pyruvate kinase; KEGG: noc:Noc_2805 pyruvate kinase; pyruvate kinase 3230261..3231715 Alkalilimnicola ehrlichii MLHE-1 4270887 YP_743674.1 CDS Mlg_2844 NC_008340.1 3231817 3232881 D class II aldolase; catalyzes the reversible aldol condensation of dihydroxyacetonephosphate and glyceraldehyde 3-phosphate in the Calvin cycle, glycolysis and gluconeogenesis; fructose-1,6-bisphosphate aldolase 3231817..3232881 Alkalilimnicola ehrlichii MLHE-1 4270888 YP_743675.1 CDS Mlg_2845 NC_008340.1 3233036 3234445 R PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: noc:Noc_2994 phosphomannomutase; phosphomannomutase complement(3233036..3234445) Alkalilimnicola ehrlichii MLHE-1 4270889 YP_743676.1 CDS Mlg_2846 NC_008340.1 3234704 3235072 R KEGG: ypm:YP0048 deoxyuridine 5'-triphosphate nucleotidohydrolase; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(3234704..3235072) Alkalilimnicola ehrlichii MLHE-1 4268584 YP_743677.1 CDS Mlg_2847 NC_008340.1 3235113 3236366 R TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: noc:Noc_2992 DNA/pantothenate metabolism flavoprotein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase complement(3235113..3236366) Alkalilimnicola ehrlichii MLHE-1 4268585 YP_743678.1 CDS Mlg_2848 NC_008340.1 3236460 3237845 R PFAM: sodium:neurotransmitter symporter; KEGG: mca:MCA2621 sodium-dependent transporter family protein; sodium:neurotransmitter symporter complement(3236460..3237845) Alkalilimnicola ehrlichii MLHE-1 4268586 YP_743679.1 CDS Mlg_2849 NC_008340.1 3237904 3238734 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pae:PA5488 hypothetical protein; hypothetical protein complement(3237904..3238734) Alkalilimnicola ehrlichii MLHE-1 4268587 YP_743680.1 CDS Mlg_2850 NC_008340.1 3238742 3239377 R PFAM: DSBA oxidoreductase; KEGG: mca:MCA2602 thiol:disulfide interchange protein DsbA; DSBA oxidoreductase complement(3238742..3239377) Alkalilimnicola ehrlichii MLHE-1 4268588 YP_743681.1 CDS Mlg_2851 NC_008340.1 3239381 3240568 R PFAM: cytochrome c assembly protein; KEGG: bte:BTH_I3034 cytochrome c assembly family protein; cytochrome c assembly protein complement(3239381..3240568) Alkalilimnicola ehrlichii MLHE-1 4268589 YP_743682.1 CDS Mlg_2852 NC_008340.1 3240568 3242673 R PFAM: ResB family protein; KEGG: mfa:Mfla_0233 ResB-like protein; ResB family protein complement(3240568..3242673) Alkalilimnicola ehrlichii MLHE-1 4268590 YP_743683.1 CDS Mlg_2853 NC_008340.1 3242793 3243410 R PFAM: cytochrome c, class I; KEGG: noc:Noc_0552 cytochrome c, class I; cytochrome c, class I complement(3242793..3243410) Alkalilimnicola ehrlichii MLHE-1 4268591 YP_743684.1 CDS Mlg_2854 NC_008340.1 3243623 3244630 R PFAM: Di-haem cytochrome c peroxidase; KEGG: sth:STH2047 cytochrome C peroxidase; cytochrome-c peroxidase complement(3243623..3244630) Alkalilimnicola ehrlichii MLHE-1 4268592 YP_743685.1 CDS Mlg_2855 NC_008340.1 3244800 3245747 D in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; sulfite oxidase subunit YedY 3244800..3245747 Alkalilimnicola ehrlichii MLHE-1 4268593 YP_743686.1 CDS Mlg_2856 NC_008340.1 3245749 3246348 D PFAM: Ferric reductase domain protein transmembrane component, N-terminal domain; KEGG: rru:Rru_A0594 hypothetical protein; ferric reductase 3245749..3246348 Alkalilimnicola ehrlichii MLHE-1 4268594 YP_743687.1 CDS Mlg_2857 NC_008340.1 3246395 3247015 D TIGRFAM: GTP-binding; PFAM: GTP-binding protein, HSR1-related; KEGG: csa:Csal_3117 GTP-binding protein, HSR1-related; cell division checkpoint GTPase YihA 3246395..3247015 Alkalilimnicola ehrlichii MLHE-1 4268595 YP_743688.1 CDS Mlg_2858 NC_008340.1 3247036 3247692 R KEGG: hch:HCH_04240 uncharacterized protein with a C-terminal OMP (outer membrane protein) domain; outer membrane protein domain-containing protein complement(3247036..3247692) Alkalilimnicola ehrlichii MLHE-1 4268596 YP_743689.1 CDS Mlg_2859 NC_008340.1 3247991 3248479 R PFAM: Disulphide bond formation protein DsbB; KEGG: csa:Csal_2653 disulphide bond formation protein DsbB; disulfide bond formation protein DsbB complement(3247991..3248479) Alkalilimnicola ehrlichii MLHE-1 4268597 YP_743690.1 CDS Mlg_2860 NC_008340.1 3248549 3251287 R KEGG: mca:MCA2573 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I complement(3248549..3251287) Alkalilimnicola ehrlichii MLHE-1 4268598 YP_743691.1 CDS Mlg_2861 NC_008340.1 3251540 3252265 D PFAM: conserved hypothetical protein 730; KEGG: noc:Noc_0555 conserved hypothetical protein 730; hypothetical protein 3251540..3252265 Alkalilimnicola ehrlichii MLHE-1 4268599 YP_743692.1 CDS Mlg_2862 NC_008340.1 3252348 3252725 D KEGG: cvi:CV0777 hypothetical protein; hypothetical protein 3252348..3252725 Alkalilimnicola ehrlichii MLHE-1 4268600 YP_743693.1 CDS Mlg_2863 NC_008340.1 3252741 3254918 R PFAM: UvrD/REP helicase; KEGG: sgl:SG2342 DNA helicase II; ATP-dependent DNA helicase UvrD complement(3252741..3254918) Alkalilimnicola ehrlichii MLHE-1 4268601 YP_743694.1 CDS Mlg_2864 NC_008340.1 3255200 3256141 R PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: xac:XAC0905 oxidative stress transcriptional regulator; LysR family transcriptional regulator complement(3255200..3256141) Alkalilimnicola ehrlichii MLHE-1 4269413 YP_743695.1 CDS Mlg_2865 NC_008340.1 3256144 3257976 R TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II; sugar isomerase (SIS); KEGG: mca:MCA0015 glucosamine--fructose-6-phosphate aminotransferase, isomerizing; glutamine--fructose-6-phosphate transaminase complement(3256144..3257976) Alkalilimnicola ehrlichii MLHE-1 4269414 YP_743696.1 CDS Mlg_2866 NC_008340.1 3258091 3258921 R PFAM: UspA domain protein; KEGG: tko:TK2034 universal stress protein; UspA domain-containing protein complement(3258091..3258921) Alkalilimnicola ehrlichii MLHE-1 4269415 YP_743697.1 CDS Mlg_2867 NC_008340.1 3258997 3260397 R TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; transferase hexapeptide repeat containing protein; Nucleotidyl transferase; KEGG: pae:PA5552 glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase; glucosamine-1-phosphate N-acetyltransferase/UDP-N-acetylglucosamine pyrophosphorylase complement(3258997..3260397) Alkalilimnicola ehrlichii MLHE-1 4269416 YP_743698.1 CDS atpC NC_008340.1 3260468 3260890 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; ATP synthase F0F1 subunit epsilon complement(3260468..3260890) Alkalilimnicola ehrlichii MLHE-1 4269417 YP_743699.1 CDS Mlg_2869 NC_008340.1 3260918 3262294 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta complement(3260918..3262294) Alkalilimnicola ehrlichii MLHE-1 4269418 YP_743700.1 CDS Mlg_2870 NC_008340.1 3262385 3263248 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; ATP synthase F0F1 subunit gamma complement(3262385..3263248) Alkalilimnicola ehrlichii MLHE-1 4269419 YP_743701.1 CDS Mlg_2871 NC_008340.1 3263279 3264820 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; ATP synthase F0F1 subunit alpha complement(3263279..3264820) Alkalilimnicola ehrlichii MLHE-1 4269420 YP_743702.1 CDS Mlg_2872 NC_008340.1 3264833 3265372 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; ATP synthase F0F1 subunit delta complement(3264833..3265372) Alkalilimnicola ehrlichii MLHE-1 4269421 YP_743703.1 CDS Mlg_2873 NC_008340.1 3265385 3265825 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; ATP synthase F0F1 subunit B complement(3265385..3265825) Alkalilimnicola ehrlichii MLHE-1 4269422 YP_743704.1 CDS Mlg_2874 NC_008340.1 3265907 3266194 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; ATP synthase F0F1 subunit C complement(3265907..3266194) Alkalilimnicola ehrlichii MLHE-1 4269423 YP_743705.1 CDS Mlg_2875 NC_008340.1 3266302 3267069 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A complement(3266302..3267069) Alkalilimnicola ehrlichii MLHE-1 4269424 YP_743706.1 CDS Mlg_2876 NC_008340.1 3267066 3267506 R PFAM: ATP synthase I chain; KEGG: sdn:Sden_3759 ATP synthase I chain; ATP synthase I chain complement(3267066..3267506) Alkalilimnicola ehrlichii MLHE-1 4269425 YP_743707.1 CDS Mlg_2877 NC_008340.1 3267659 3268522 R TIGRFAM: parB-like partition proteins; PFAM: ParB domain protein nuclease; KEGG: noc:Noc_3082 ParB-like partition protein; parB-like partition proteins complement(3267659..3268522) Alkalilimnicola ehrlichii MLHE-1 4269426 YP_743708.1 CDS Mlg_2878 NC_008340.1 3268528 3269361 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: pfl:PFL_6224 chromosome partitioning protein ParA; cobyrinic acid a,c-diamide synthase complement(3268528..3269361) Alkalilimnicola ehrlichii MLHE-1 4269427 YP_743709.1 CDS Mlg_2879 NC_008340.1 3269358 3270020 R TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; methyltransferase small; Methyltransferase type 12; KEGG: noc:Noc_3084 glucose inhibited division protein; methyltransferase GidB complement(3269358..3270020) Alkalilimnicola ehrlichii MLHE-1 4269428 YP_743710.1 CDS gidA NC_008340.1 3270021 3271910 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(3270021..3271910) Alkalilimnicola ehrlichii MLHE-1 4269429 YP_743711.1 CDS Mlg_2881 NC_008340.1 3272218 3273552 R TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; GTP-binding; PFAM: GTP-binding protein, HSR1-related; KEGG: vpa:VP0002 thiophene and furan oxidation protein ThdF; tRNA modification GTPase TrmE complement(3272218..3273552) Alkalilimnicola ehrlichii MLHE-1 4269763 YP_743712.1 CDS Mlg_2882 NC_008340.1 3273557 3275245 R PFAM: 60 kDa inner membrane insertion protein; KEGG: mfa:Mfla_2758 60 kDa inner membrane insertion protein; protein translocase subunit yidC complement(3273557..3275245) Alkalilimnicola ehrlichii MLHE-1 4269764 YP_743713.1 CDS Mlg_2883 NC_008340.1 3275317 3275688 R TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: mca:MCA3035 ribonuclease P protein component; ribonuclease P protein component complement(3275317..3275688) Alkalilimnicola ehrlichii MLHE-1 4269765 YP_743714.1 CDS rpmH NC_008340.1 3275693 3275827 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(3275693..3275827) Alkalilimnicola ehrlichii MLHE-1 4269766 Mlg_R0001 tRNA Mlg_R0001 NC_008340.1 97604 97677 D tRNA-Gly 97604..97677 Alkalilimnicola ehrlichii MLHE-1 4269918 Mlg_R0002 tRNA Mlg_R0002 NC_008340.1 274056 274131 R tRNA-Lys complement(274056..274131) Alkalilimnicola ehrlichii MLHE-1 4270867 Mlg_R0003 tRNA Mlg_R0003 NC_008340.1 324945 325019 D tRNA-Gln 324945..325019 Alkalilimnicola ehrlichii MLHE-1 4269312 Mlg_R0005 tRNA Mlg_R0005 NC_008340.1 369818 369894 D tRNA-Ile 369818..369894 Alkalilimnicola ehrlichii MLHE-1 4270071 Mlg_R0006 tRNA Mlg_R0006 NC_008340.1 370065 370140 D tRNA-Ala 370065..370140 Alkalilimnicola ehrlichii MLHE-1 4269887 Mlg_R0010 tRNA Mlg_R0010 NC_008340.1 489953 490029 D tRNA-Ile 489953..490029 Alkalilimnicola ehrlichii MLHE-1 4268293 Mlg_R0011 tRNA Mlg_R0011 NC_008340.1 490201 490276 D tRNA-Ala 490201..490276 Alkalilimnicola ehrlichii MLHE-1 4270380 Mlg_R0014 tRNA Mlg_R0014 NC_008340.1 497459 497534 D tRNA-Thr 497459..497534 Alkalilimnicola ehrlichii MLHE-1 4270387 Mlg_R0015 tRNA Mlg_R0015 NC_008340.1 499602 499686 D tRNA-Tyr 499602..499686 Alkalilimnicola ehrlichii MLHE-1 4270389 Mlg_R0016 tRNA Mlg_R0016 NC_008340.1 499726 499799 D tRNA-Gly 499726..499799 Alkalilimnicola ehrlichii MLHE-1 4270390 Mlg_R0017 tRNA Mlg_R0017 NC_008340.1 499821 499896 D tRNA-Thr 499821..499896 Alkalilimnicola ehrlichii MLHE-1 4270391 Mlg_R0018 tRNA Mlg_R0018 NC_008340.1 501217 501292 D tRNA-Trp 501217..501292 Alkalilimnicola ehrlichii MLHE-1 4270792 Mlg_R0019 tRNA Mlg_R0019 NC_008340.1 539503 539578 D tRNA-Thr 539503..539578 Alkalilimnicola ehrlichii MLHE-1 4268428 Mlg_R0020 tRNA Mlg_R0020 NC_008340.1 610119 610193 R tRNA-Glu complement(610119..610193) Alkalilimnicola ehrlichii MLHE-1 4270891 Mlg_R0021 tRNA Mlg_R0021 NC_008340.1 629590 629676 R tRNA-Leu complement(629590..629676) Alkalilimnicola ehrlichii MLHE-1 4268313 Mlg_R0022 tRNA Mlg_R0022 NC_008340.1 643969 644045 D tRNA-Pro 643969..644045 Alkalilimnicola ehrlichii MLHE-1 4270367 Mlg_R0023 tRNA Mlg_R0023 NC_008340.1 644094 644170 D tRNA-Arg 644094..644170 Alkalilimnicola ehrlichii MLHE-1 4270368 Mlg_R0024 tRNA Mlg_R0024 NC_008340.1 644208 644283 D tRNA-His 644208..644283 Alkalilimnicola ehrlichii MLHE-1 4270369 Mlg_R0025 tRNA Mlg_R0025 NC_008340.1 644290 644365 D tRNA-Lys 644290..644365 Alkalilimnicola ehrlichii MLHE-1 4270370 Mlg_R0026 tRNA Mlg_R0026 NC_008340.1 680908 680984 R tRNA-Arg complement(680908..680984) Alkalilimnicola ehrlichii MLHE-1 4270613 Mlg_R0027 tRNA Mlg_R0027 NC_008340.1 697040 697115 R tRNA-Ala complement(697040..697115) Alkalilimnicola ehrlichii MLHE-1 4270835 Mlg_R0028 tRNA Mlg_R0028 NC_008340.1 847408 847484 R tRNA-Pro complement(847408..847484) Alkalilimnicola ehrlichii MLHE-1 4268574 Mlg_R0029 tRNA Mlg_R0029 NC_008340.1 887757 887833 R tRNA-Val complement(887757..887833) Alkalilimnicola ehrlichii MLHE-1 4270559 Mlg_R0030 tRNA Mlg_R0030 NC_008340.1 943640 943716 R tRNA-Pro complement(943640..943716) Alkalilimnicola ehrlichii MLHE-1 4268258 Mlg_R0031 tRNA Mlg_R0031 NC_008340.1 1160083 1160172 D tRNA-Ser 1160083..1160172 Alkalilimnicola ehrlichii MLHE-1 4270048 Mlg_R0032 tRNA Mlg_R0032 NC_008340.1 1248149 1248224 R tRNA-Asn complement(1248149..1248224) Alkalilimnicola ehrlichii MLHE-1 4268990 Mlg_R0033 tRNA Mlg_R0033 NC_008340.1 1415805 1415889 R tRNA-Leu complement(1415805..1415889) Alkalilimnicola ehrlichii MLHE-1 4270702 Mlg_R0034 tRNA Mlg_R0034 NC_008340.1 1495246 1495336 D tRNA-Ser 1495246..1495336 Alkalilimnicola ehrlichii MLHE-1 4269060 Mlg_R0035 tRNA Mlg_R0035 NC_008340.1 1504176 1504251 D tRNA-Ala 1504176..1504251 Alkalilimnicola ehrlichii MLHE-1 4268640 Mlg_R0036 tRNA Mlg_R0036 NC_008340.1 1504380 1504455 D tRNA-Ala 1504380..1504455 Alkalilimnicola ehrlichii MLHE-1 4268641 Mlg_R0037 tRNA Mlg_R0037 NC_008340.1 1561501 1561576 D tRNA-Gly 1561501..1561576 Alkalilimnicola ehrlichii MLHE-1 4268618 Mlg_R0038 tRNA Mlg_R0038 NC_008340.1 1561705 1561778 D tRNA-Cys 1561705..1561778 Alkalilimnicola ehrlichii MLHE-1 4268125 Mlg_R0039 tRNA Mlg_R0039 NC_008340.1 1561830 1561915 D tRNA-Leu 1561830..1561915 Alkalilimnicola ehrlichii MLHE-1 4268126 Mlg_R0040 tRNA Mlg_R0040 NC_008340.1 1690014 1690090 R tRNA-Arg complement(1690014..1690090) Alkalilimnicola ehrlichii MLHE-1 4269271 Mlg_R0041 tRNA Mlg_R0041 NC_008340.1 1690137 1690228 R tRNA-Ser complement(1690137..1690228) Alkalilimnicola ehrlichii MLHE-1 4269272 Mlg_R0043 tRNA Mlg_R0043 NC_008340.1 1774516 1774590 R tRNA-Val complement(1774516..1774590) Alkalilimnicola ehrlichii MLHE-1 4269925 Mlg_R0044 tRNA Mlg_R0044 NC_008340.1 1826410 1826497 D tRNA-Ser 1826410..1826497 Alkalilimnicola ehrlichii MLHE-1 4268294 Mlg_R0045 tRNA Mlg_R0045 NC_008340.1 1866616 1866691 R tRNA-Glu complement(1866616..1866691) Alkalilimnicola ehrlichii MLHE-1 4270353 Mlg_R0046 tRNA Mlg_R0046 NC_008340.1 2219534 2219610 R tRNA-Met complement(2219534..2219610) Alkalilimnicola ehrlichii MLHE-1 4268119 Mlg_R0047 tRNA Mlg_R0047 NC_008340.1 2240609 2240693 R tRNA-Leu complement(2240609..2240693) Alkalilimnicola ehrlichii MLHE-1 4268173 Mlg_R0049 tRNA Mlg_R0049 NC_008340.1 2543728 2543801 R tRNA-Gln complement(2543728..2543801) Alkalilimnicola ehrlichii MLHE-1 4270273 Mlg_R0050 tRNA Mlg_R0050 NC_008340.1 2591270 2591346 R tRNA-Asp complement(2591270..2591346) Alkalilimnicola ehrlichii MLHE-1 4268380 Mlg_R0051 tRNA Mlg_R0051 NC_008340.1 2591360 2591435 R tRNA-Val complement(2591360..2591435) Alkalilimnicola ehrlichii MLHE-1 4268381 Mlg_R0052 tRNA Mlg_R0052 NC_008340.1 2598588 2598674 R tRNA-Leu complement(2598588..2598674) Alkalilimnicola ehrlichii MLHE-1 4268387 Mlg_R0053 tRNA Mlg_R0053 NC_008340.1 2859072 2859148 R tRNA-Met complement(2859072..2859148) Alkalilimnicola ehrlichii MLHE-1 4268770 Mlg_R0054 tRNA Mlg_R0054 NC_008340.1 3044231 3044307 R tRNA-Arg complement(3044231..3044307) Alkalilimnicola ehrlichii MLHE-1 4269561 Mlg_R0055 tRNA Mlg_R0055 NC_008340.1 3058396 3058471 D tRNA-Phe 3058396..3058471 Alkalilimnicola ehrlichii MLHE-1 4269940 Mlg_R0056 tRNA Mlg_R0056 NC_008340.1 3081898 3081974 R tRNA-Met complement(3081898..3081974) Alkalilimnicola ehrlichii MLHE-1 4269509 Mlg_R0004 rRNA Mlg_R0004 NC_008340.1 368208 369739 D 16S ribosomal RNA 368208..369739 Alkalilimnicola ehrlichii MLHE-1 4270070 Mlg_R0007 rRNA Mlg_R0007 NC_008340.1 370366 373263 D 23S ribosomal RNA 370366..373263 Alkalilimnicola ehrlichii MLHE-1 4269888 Mlg_R0008 rRNA Mlg_R0008 NC_008340.1 373383 373499 D 5S ribosomal RNA 373383..373499 Alkalilimnicola ehrlichii MLHE-1 4269889 Mlg_R0009 rRNA Mlg_R0009 NC_008340.1 488343 489874 D 16S ribosomal RNA 488343..489874 Alkalilimnicola ehrlichii MLHE-1 4268292 Mlg_R0012 rRNA Mlg_R0012 NC_008340.1 490502 493399 D 23S ribosomal RNA 490502..493399 Alkalilimnicola ehrlichii MLHE-1 4270381 Mlg_R0013 rRNA Mlg_R0013 NC_008340.1 493519 493635 D 23S ribosomal RNA 493519..493635 Alkalilimnicola ehrlichii MLHE-1 4270382