-- dump date 20140618_194253 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001317903.1 150387854 5314968 50..1396 1 NC_009633.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1396 dnaA 5314968 dnaA Alkaliphilus metalliredigens QYMF chromosomal replication initiation protein YP_001317903.1 50 D 293826 CDS YP_001317904.1 150387855 5310028 1629..2735 1 NC_009633.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2735 5310028 Amet_0002 Alkaliphilus metalliredigens QYMF DNA polymerase III subunit beta YP_001317904.1 1629 D 293826 CDS YP_001317905.1 150387856 5310029 2819..3028 1 NC_009633.1 PFAM: RNA-binding S4 domain protein; KEGG: cth:Cthe_2373 RNA-binding S4; RNA-binding S4 domain-containing protein 3028 5310029 Amet_0003 Alkaliphilus metalliredigens QYMF RNA-binding S4 domain-containing protein YP_001317905.1 2819 D 293826 CDS YP_001317906.1 150387857 5310030 3115..4221 1 NC_009633.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4221 recF 5310030 recF Alkaliphilus metalliredigens QYMF recombination protein F YP_001317906.1 3115 D 293826 CDS YP_001317907.1 150387858 5310031 4310..4597 1 NC_009633.1 KEGG: cth:Cthe_2375 hypothetical protein; hypothetical protein 4597 5310031 Amet_0005 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317907.1 4310 D 293826 CDS YP_001317908.1 150387859 5310032 4652..6559 1 NC_009633.1 KEGG: gka:GK0005 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 6559 5310032 Amet_0006 Alkaliphilus metalliredigens QYMF DNA gyrase subunit B YP_001317908.1 4652 D 293826 CDS YP_001317909.1 150387860 5310033 6576..9068 1 NC_009633.1 TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: chy:CHY_2704 DNA gyrase, A subunit; DNA gyrase subunit A 9068 5310033 Amet_0007 Alkaliphilus metalliredigens QYMF DNA gyrase subunit A YP_001317909.1 6576 D 293826 CDS YP_001317910.1 150387861 5310034 9333..9650 1 NC_009633.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cth:Cthe_2898 anti-sigma-factor antagonist; anti-sigma-factor antagonist 9650 5310034 Amet_0008 Alkaliphilus metalliredigens QYMF anti-sigma-factor antagonist YP_001317910.1 9333 D 293826 CDS YP_001317911.1 150387862 5310035 9691..10116 1 NC_009633.1 KEGG: bcl:ABC0815 anti-sigma B factor; putative anti-sigma regulatory factor 10116 5310035 Amet_0009 Alkaliphilus metalliredigens QYMF putative anti-sigma regulatory factor YP_001317911.1 9691 D 293826 CDS YP_001317912.1 150387863 5310036 10116..10916 1 NC_009633.1 TIGRFAM: phage transcriptional regulator, RinA family; RNA polymerase sigma-70; RNA polymerase sigma-B/F/G type; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: cth:Cthe_2900 RNA polymerase, sigma 28 subunit; RinA family phage transcriptional regulator 10916 5310036 Amet_0010 Alkaliphilus metalliredigens QYMF RinA family phage transcriptional regulator YP_001317912.1 10116 D 293826 CDS YP_001317913.1 150387864 5310040 16755..16907 1 NC_009633.1 hypothetical protein 16907 5310040 Amet_0011 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317913.1 16755 D 293826 CDS YP_001317914.1 150387865 5310041 17117..17344 1 NC_009633.1 hypothetical protein 17344 5310041 Amet_0012 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317914.1 17117 D 293826 CDS YP_001317915.1 150387866 5310042 17548..18012 1 NC_009633.1 PFAM: protein of unknown function DUF988; KEGG: ctc:CTC02339 transporter; hypothetical protein 18012 5310042 Amet_0013 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317915.1 17548 D 293826 CDS YP_001317916.1 150387867 5310043 18180..19043 1 NC_009633.1 KEGG: tma:TM1086 hypothetical protein; hypothetical protein 19043 5310043 Amet_0014 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317916.1 18180 D 293826 CDS YP_001317917.1 150387868 5310044 19183..20526 1 NC_009633.1 PFAM: glycine cleavage system P-protein; KEGG: tte:TTE0294 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain; glycine dehydrogenase 20526 5310044 Amet_0015 Alkaliphilus metalliredigens QYMF glycine dehydrogenase YP_001317917.1 19183 D 293826 CDS YP_001317918.1 150387869 5310045 20526..21971 1 NC_009633.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 21971 5310045 Amet_0016 Alkaliphilus metalliredigens QYMF glycine dehydrogenase subunit 2 YP_001317918.1 20526 D 293826 CDS YP_001317919.1 150387870 5310049 27844..28755 1 NC_009633.1 TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; KEGG: cth:Cthe_2356 quinolinate synthetase complex, A subunit; quinolinate synthetase complex subunit A 28755 5310049 Amet_0017 Alkaliphilus metalliredigens QYMF quinolinate synthetase complex subunit A YP_001317919.1 27844 D 293826 CDS YP_001317920.1 150387871 5310050 28770..30332 1 NC_009633.1 TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: cth:Cthe_2355 L-aspartate oxidase; L-aspartate oxidase 30332 5310050 Amet_0018 Alkaliphilus metalliredigens QYMF L-aspartate oxidase YP_001317920.1 28770 D 293826 CDS YP_001317921.1 150387872 5310051 30355..31194 1 NC_009633.1 TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; KEGG: cth:Cthe_2354 nicotinate-nucleotide pyrophosphorylase; nicotinate-nucleotide pyrophosphorylase 31194 5310051 Amet_0019 Alkaliphilus metalliredigens QYMF nicotinate-nucleotide pyrophosphorylase YP_001317921.1 30355 D 293826 CDS YP_001317922.1 150387873 5310052 31205..31723 1 NC_009633.1 PFAM: 3H domain protein; Helix-turn-helix, type 11 domain protein; KEGG: tte:TTE0520 hypothetical protein; 3H domain-containing protein 31723 5310052 Amet_0020 Alkaliphilus metalliredigens QYMF 3H domain-containing protein YP_001317922.1 31205 D 293826 CDS YP_001317923.1 150387874 5310053 31739..32788 1 NC_009633.1 PFAM: phosphotransferase system, EIIC; KEGG: bha:BH3254 hypothetical protein; phosphotransferase system, EIIC 32788 5310053 Amet_0021 Alkaliphilus metalliredigens QYMF phosphotransferase system, EIIC YP_001317923.1 31739 D 293826 CDS YP_001317924.1 150387875 5310054 32891..35689 1 NC_009633.1 PFAM: protein of unknown function UPF0182; KEGG: swo:Swol_1161 protein of unknown function UPF0182; hypothetical protein 35689 5310054 Amet_0022 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317924.1 32891 D 293826 CDS YP_001317925.1 150387876 5310055 complement(35753..35959) 1 NC_009633.1 hypothetical protein 35959 5310055 Amet_0023 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317925.1 35753 R 293826 CDS YP_001317926.1 150387877 5310056 36527..37807 1 NC_009633.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 37807 5310056 Amet_0024 Alkaliphilus metalliredigens QYMF seryl-tRNA synthetase YP_001317926.1 36527 D 293826 CDS YP_001317927.1 150387878 5310057 38018..38752 1 NC_009633.1 hypothetical protein 38752 5310057 Amet_0025 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317927.1 38018 D 293826 CDS YP_001317928.1 150387879 5310059 38949..39404 1 NC_009633.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: gka:GK0016 hypothetical protein; CMP/dCMP deaminase 39404 5310059 Amet_0026 Alkaliphilus metalliredigens QYMF CMP/dCMP deaminase YP_001317928.1 38949 D 293826 CDS YP_001317929.1 150387880 5310062 40091..40726 1 NC_009633.1 PFAM: SirA family protein; KEGG: swo:Swol_1887 SirA-like protein; SirA family protein 40726 5310062 Amet_0027 Alkaliphilus metalliredigens QYMF SirA family protein YP_001317929.1 40091 D 293826 CDS YP_001317930.1 150387881 5310063 40741..41007 1 NC_009633.1 KEGG: tte:TTE1677 hypothetical protein; hypothetical protein 41007 5310063 Amet_0028 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317930.1 40741 D 293826 CDS YP_001317931.1 150387882 5310064 41021..41905 1 NC_009633.1 PFAM: MscS Mechanosensitive ion channel; KEGG: tte:TTE2783 Small-conductance mechanosensitive channel; mechanosensitive ion channel protein MscS 41905 5310064 Amet_0029 Alkaliphilus metalliredigens QYMF mechanosensitive ion channel protein MscS YP_001317931.1 41021 D 293826 CDS YP_001317932.1 150387883 5310065 42014..42208 1 NC_009633.1 PFAM: protein of unknown function DUF951; KEGG: cth:Cthe_2512 protein of unknown function DUF951; hypothetical protein 42208 5310065 Amet_0030 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317932.1 42014 D 293826 CDS YP_001317933.1 150387884 5310066 42372..43565 1 NC_009633.1 PFAM: aminotransferase, class I and II; KEGG: mmp:MMP0096 aminotransferase (subgroup I); GntR family transcriptional regulator 43565 5310066 Amet_0031 Alkaliphilus metalliredigens QYMF GntR family transcriptional regulator YP_001317933.1 42372 D 293826 CDS YP_001317934.1 150387885 5310067 43948..44232 1 NC_009633.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 44232 rpsF 5310067 rpsF Alkaliphilus metalliredigens QYMF 30S ribosomal protein S6 YP_001317934.1 43948 D 293826 CDS YP_001317935.1 150387886 5310068 44256..44696 1 NC_009633.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: ctc:CTC00108 single-strand binding protein; single-strand binding protein 44696 5310068 Amet_0033 Alkaliphilus metalliredigens QYMF single-strand binding protein YP_001317935.1 44256 D 293826 CDS YP_001317936.1 150387887 5310069 44715..44945 1 NC_009633.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 44945 rpsR 5310069 rpsR Alkaliphilus metalliredigens QYMF 30S ribosomal protein S18 YP_001317936.1 44715 D 293826 CDS YP_001317937.1 150387888 5310070 45115..46218 1 NC_009633.1 PFAM: YibE/F family protein; KEGG: cno:NT01CX_0212 conserved membrane protein, putative; hypothetical protein 46218 5310070 Amet_0035 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317937.1 45115 D 293826 CDS YP_001317938.1 150387889 5310071 46365..46781 1 NC_009633.1 KEGG: cpf:CPF_0517 hypothetical protein; hypothetical protein 46781 5310071 Amet_0036 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317938.1 46365 D 293826 CDS YP_001317939.1 150387890 5310072 47045..47647 1 NC_009633.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: swo:Swol_0069 ribosomal protein L25; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 47647 5310072 Amet_0037 Alkaliphilus metalliredigens QYMF ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_001317939.1 47045 D 293826 CDS YP_001317940.1 150387891 5310073 47781..48395 1 NC_009633.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: cpe:CPE1874 probable general stress protein; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 48395 5310073 Amet_0038 Alkaliphilus metalliredigens QYMF ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_001317940.1 47781 D 293826 CDS YP_001317941.1 150387892 5310082 complement(59604..60812) 1 NC_009633.1 TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rxy:Rxyl_2475 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase 60812 5310082 Amet_0039 Alkaliphilus metalliredigens QYMF acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase YP_001317941.1 59604 R 293826 CDS YP_001317942.1 150387893 5310083 complement(60905..62329) 1 NC_009633.1 PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; KEGG: bld:BLi00322 YcgA; C4-dicarboxylate anaerobic carrier 62329 5310083 Amet_0040 Alkaliphilus metalliredigens QYMF C4-dicarboxylate anaerobic carrier YP_001317942.1 60905 R 293826 CDS YP_001317943.1 150387894 5310084 62690..64081 1 NC_009633.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: pab:PAB0090 D-aminoacylase (aspartate, glutamate etc); amidohydrolase 3 64081 5310084 Amet_0041 Alkaliphilus metalliredigens QYMF amidohydrolase 3 YP_001317943.1 62690 D 293826 CDS YP_001317944.1 150387895 5310085 64185..65354 1 NC_009633.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bld:BLi00323 hypothetical protein; amidohydrolase 65354 5310085 Amet_0042 Alkaliphilus metalliredigens QYMF amidohydrolase YP_001317944.1 64185 D 293826 CDS YP_001317945.1 150387896 5310086 65576..67054 1 NC_009633.1 PFAM: chemotaxis sensory transducer; KEGG: tte:TTE1777 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 67054 5310086 Amet_0043 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001317945.1 65576 D 293826 CDS YP_001317946.1 150387897 5310087 67152..67490 1 NC_009633.1 PFAM: protein of unknown function DUF156; KEGG: dsy:DSY4511 hypothetical protein; hypothetical protein 67490 5310087 Amet_0044 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317946.1 67152 D 293826 CDS YP_001317947.1 150387898 5310088 67581..67796 1 NC_009633.1 PFAM: Heavy metal transport/detoxification protein; KEGG: dsy:DSY4509 hypothetical protein; heavy metal transport/detoxification protein 67796 5310088 Amet_0045 Alkaliphilus metalliredigens QYMF heavy metal transport/detoxification protein YP_001317947.1 67581 D 293826 CDS YP_001317948.1 150387899 5310089 complement(67921..68937) 1 NC_009633.1 PFAM: aminodeoxychorismate lyase; KEGG: tte:TTE1255 predicted periplasmic solute-binding protein; aminodeoxychorismate lyase 68937 5310089 Amet_0046 Alkaliphilus metalliredigens QYMF aminodeoxychorismate lyase YP_001317948.1 67921 R 293826 CDS YP_001317949.1 150387900 5310090 69263..70279 1 NC_009633.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: sus:Acid_0749 UBA/ThiF-type NAD/FAD binding protein; UBA/THIF-type NAD/FAD binding protein 70279 5310090 Amet_0047 Alkaliphilus metalliredigens QYMF UBA/THIF-type NAD/FAD binding protein YP_001317949.1 69263 D 293826 CDS YP_001317950.1 150387901 5310091 70432..71064 1 NC_009633.1 PFAM: SNARE associated Golgi protein; KEGG: cac:CAC0677 hypothetical protein; hypothetical protein 71064 5310091 Amet_0048 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317950.1 70432 D 293826 CDS YP_001317951.1 150387902 5310092 complement(71109..71585) 1 NC_009633.1 KEGG: mta:Moth_2197 putative transcriptional regulator, AsnC family; AsnC family transcriptional regulator 71585 5310092 Amet_0049 Alkaliphilus metalliredigens QYMF AsnC family transcriptional regulator YP_001317951.1 71109 R 293826 CDS YP_001317952.1 150387903 5310093 complement(71582..72040) 1 NC_009633.1 SMART: regulatory protein, AsnC/Lrp family; KEGG: mta:Moth_2198 putative transcriptional regulator, AsnC family; AsnC family transcriptional regulator 72040 5310093 Amet_0050 Alkaliphilus metalliredigens QYMF AsnC family transcriptional regulator YP_001317952.1 71582 R 293826 CDS YP_001317953.1 150387904 5310094 complement(72033..73040) 1 NC_009633.1 PFAM: Radical SAM domain protein; KEGG: chy:CHY_1211 radical SAM domain protein; radical SAM domain-containing protein 73040 5310094 Amet_0051 Alkaliphilus metalliredigens QYMF radical SAM domain-containing protein YP_001317953.1 72033 R 293826 CDS YP_001317954.1 150387905 5310095 complement(73037..74245) 1 NC_009633.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY2223 hypothetical protein; radical SAM domain-containing protein 74245 5310095 Amet_0052 Alkaliphilus metalliredigens QYMF radical SAM domain-containing protein YP_001317954.1 73037 R 293826 CDS YP_001317955.1 150387906 5310096 74566..75975 1 NC_009633.1 PFAM: conserved hypothetical protein 698; KEGG: ter:Tery_0334 conserved hypothetical protein 698; hypothetical protein 75975 5310096 Amet_0053 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317955.1 74566 D 293826 CDS YP_001317956.1 150387907 5310097 76126..76353 1 NC_009633.1 hypothetical protein 76353 5310097 Amet_0054 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317956.1 76126 D 293826 CDS YP_001317957.1 150387908 5310098 76435..76839 1 NC_009633.1 PFAM: SirA family protein; KEGG: gme:Gmet_1571 hypothetical protein; SirA family protein 76839 5310098 Amet_0055 Alkaliphilus metalliredigens QYMF SirA family protein YP_001317957.1 76435 D 293826 CDS YP_001317958.1 150387909 5310099 76860..77771 1 NC_009633.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: mta:Moth_1706 cysteine synthase A; cysteine synthase A 77771 5310099 Amet_0056 Alkaliphilus metalliredigens QYMF cysteine synthase A YP_001317958.1 76860 D 293826 CDS YP_001317959.1 150387910 5310100 77883..79118 1 NC_009633.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: cac:CAC0102 O-acetylhomoserine (thiol)-lyase; cysteine synthase 79118 5310100 Amet_0057 Alkaliphilus metalliredigens QYMF cysteine synthase YP_001317959.1 77883 D 293826 CDS YP_001317960.1 150387911 5310101 79684..80958 1 NC_009633.1 PFAM: glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; KEGG: cno:NT01CX_0264 glutamyl-tRNA reductase; glutamyl-tRNA reductase 80958 5310101 Amet_0058 Alkaliphilus metalliredigens QYMF glutamyl-tRNA reductase YP_001317960.1 79684 D 293826 CDS YP_001317961.1 150387912 5310102 80971..81699 1 NC_009633.1 TIGRFAM: siroheme synthase; KEGG: gka:GK0404 siroheme synthase; siroheme synthase 81699 5310102 Amet_0059 Alkaliphilus metalliredigens QYMF siroheme synthase YP_001317961.1 80971 D 293826 CDS YP_001317962.1 150387913 5310103 81632..82582 1 NC_009633.1 TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; KEGG: bsu:BG10342 porphobilinogen deaminase (hydroxymethylbilane synthase); porphobilinogen deaminase 82582 5310103 Amet_0060 Alkaliphilus metalliredigens QYMF porphobilinogen deaminase YP_001317962.1 81632 D 293826 CDS YP_001317963.1 150387914 5310104 82626..84134 1 NC_009633.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dsy:DSY2224 hypothetical protein; uroporphyrin-III C-methyltransferase 84134 5310104 Amet_0061 Alkaliphilus metalliredigens QYMF uroporphyrin-III C-methyltransferase YP_001317963.1 82626 D 293826 CDS YP_001317964.1 150387915 5310105 84135..85109 1 NC_009633.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 85109 5310105 Amet_0062 Alkaliphilus metalliredigens QYMF delta-aminolevulinic acid dehydratase YP_001317964.1 84135 D 293826 CDS YP_001317965.1 150387916 5310106 85091..86413 1 NC_009633.1 TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: chy:CHY_1212 glutamate-1-semialdehyde-2,1-aminomutase; glutamate-1-semialdehyde-2,1-aminomutase 86413 5310106 Amet_0063 Alkaliphilus metalliredigens QYMF glutamate-1-semialdehyde-2,1-aminomutase YP_001317965.1 85091 D 293826 CDS YP_001317966.1 150387917 5310107 86836..87210 1 NC_009633.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: ppd:Ppro_1299 cobalamin (vitamin B12) biosynthesis CbiX protein; cobalamin (vitamin B12) biosynthesis CbiX protein 87210 5310107 Amet_0064 Alkaliphilus metalliredigens QYMF cobalamin (vitamin B12) biosynthesis CbiX protein YP_001317966.1 86836 D 293826 CDS YP_001317967.1 150387918 5310108 87298..88701 1 NC_009633.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: tte:TTE0375 Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 88701 5310108 Amet_0065 Alkaliphilus metalliredigens QYMF cobyrinic acid a,c-diamide synthase YP_001317967.1 87298 D 293826 CDS YP_001317968.1 150387919 5310109 88804..89325 1 NC_009633.1 KEGG: tte:TTE0378 hypothetical protein; hypothetical protein 89325 5310109 Amet_0066 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317968.1 88804 D 293826 CDS YP_001317969.1 150387920 5310110 89315..90061 1 NC_009633.1 KEGG: ctc:CTC00742 hypothetical protein; hypothetical protein 90061 5310110 Amet_0067 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317969.1 89315 D 293826 CDS YP_001317970.1 150387921 5310111 90100..90975 1 NC_009633.1 PFAM: GHMP kinase; KEGG: lin:lin1134 hypothetical protein; GHMP kinase 90975 5310111 Amet_0068 Alkaliphilus metalliredigens QYMF GHMP kinase YP_001317970.1 90100 D 293826 CDS YP_001317971.1 150387922 5310112 90992..91612 1 NC_009633.1 PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: cpr:CPR_1241 precorrin-8X methylmutase; precorrin-8X methylmutase CbiC/CobH 91612 5310112 Amet_0069 Alkaliphilus metalliredigens QYMF precorrin-8X methylmutase CbiC/CobH YP_001317971.1 90992 D 293826 CDS YP_001317972.1 150387923 5310113 91627..92760 1 NC_009633.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 92760 cbiD 5310113 cbiD Alkaliphilus metalliredigens QYMF cobalt-precorrin-6A synthase YP_001317972.1 91627 D 293826 CDS YP_001317973.1 150387924 5310114 92753..93373 1 NC_009633.1 TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ctc:CTC00734 precorrin-6B methylase/decarboxylase cbiT/cbiE; precorrin-6Y C5,15-methyltransferase subunit CbiE 93373 5310114 Amet_0071 Alkaliphilus metalliredigens QYMF precorrin-6Y C5,15-methyltransferase subunit CbiE YP_001317973.1 92753 D 293826 CDS YP_001317974.1 150387925 5310115 93366..93974 1 NC_009633.1 TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; KEGG: fnu:FN0964 precorrin-8W decarboxylase; precorrin-6Y C5,15-methyltransferase subunit CbiT 93974 5310115 Amet_0072 Alkaliphilus metalliredigens QYMF precorrin-6Y C5,15-methyltransferase subunit CbiT YP_001317974.1 93366 D 293826 CDS YP_001317975.1 150387926 5310116 93964..94686 1 NC_009633.1 TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mta:Moth_1091 precorrin-2 C20-methyltransferase; precorrin-2 C(20)-methyltransferase 94686 5310116 Amet_0073 Alkaliphilus metalliredigens QYMF precorrin-2 C(20)-methyltransferase YP_001317975.1 93964 D 293826 CDS YP_001317976.1 150387927 5310117 94679..95446 1 NC_009633.1 TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: fnu:FN0957 precorrin-4 C11-methyltransferase; precorrin-4 C(11)-methyltransferase 95446 5310117 Amet_0074 Alkaliphilus metalliredigens QYMF precorrin-4 C(11)-methyltransferase YP_001317976.1 94679 D 293826 CDS YP_001317977.1 150387928 5310118 95443..96507 1 NC_009633.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: fnu:FN0952 cobalamin biosynthesis protein G; cobalamin (vitamin B12) biosynthesis protein CbiG 96507 5310118 Amet_0075 Alkaliphilus metalliredigens QYMF cobalamin (vitamin B12) biosynthesis protein CbiG YP_001317977.1 95443 D 293826 CDS YP_001317978.1 150387929 5310119 96579..97319 1 NC_009633.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: gme:Gmet_0485 cobyric acid synthase CobQ:precorrin-3B C17-methyltransferase region; precorrin-3B C(17)-methyltransferase 97319 5310119 Amet_0076 Alkaliphilus metalliredigens QYMF precorrin-3B C(17)-methyltransferase YP_001317978.1 96579 D 293826 CDS YP_001317979.1 150387930 5310120 97316..98092 1 NC_009633.1 TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK; KEGG: mta:Moth_1223 precorrin-6x reductase; precorrin-6x reductase 98092 5310120 Amet_0077 Alkaliphilus metalliredigens QYMF precorrin-6x reductase YP_001317979.1 97316 D 293826 CDS YP_001317980.1 150387931 5310121 98625..99125 1 NC_009633.1 KEGG: ctc:CTC00217 hypothetical protein; hypothetical protein 99125 5310121 Amet_0078 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317980.1 98625 D 293826 CDS YP_001317981.1 150387932 5310122 99267..99452 1 NC_009633.1 hypothetical protein 99452 5310122 Amet_0079 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317981.1 99267 D 293826 CDS YP_001317982.1 150387933 5310123 complement(99506..99682) 1 NC_009633.1 hypothetical protein 99682 5310123 Amet_0080 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317982.1 99506 R 293826 CDS YP_001317983.1 150387934 5310124 99846..101276 1 NC_009633.1 PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; Soluble liver antigen/liver pancreas antigen; KEGG: tte:TTE0093 Arginine/lysine/ornithine decarboxylases; Orn/Lys/Arg decarboxylase, major region 101276 5310124 Amet_0081 Alkaliphilus metalliredigens QYMF Orn/Lys/Arg decarboxylase, major region YP_001317983.1 99846 D 293826 CDS YP_001317984.1 150387935 5310125 101366..102001 1 NC_009633.1 PFAM: thymidylate kinase; KEGG: lga:LGAS_0372 thymidylate kinase; dTMP kinase 102001 5310125 Amet_0082 Alkaliphilus metalliredigens QYMF dTMP kinase YP_001317984.1 101366 D 293826 CDS YP_001317985.1 150387936 5310126 101998..102327 1 NC_009633.1 PFAM: protein of unknown function DUF970; KEGG: cac:CAC0299 protein from nitrogen regulatory protein P-II (GlnB) family, ortholog YAAQ B.subtilis; hypothetical protein 102327 5310126 Amet_0083 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317985.1 101998 D 293826 CDS YP_001317986.1 150387937 5310127 102347..103336 1 NC_009633.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: tte:TTE0097 ATPase involved in DNA replication; DNA polymerase III subunit delta' 103336 5310127 Amet_0084 Alkaliphilus metalliredigens QYMF DNA polymerase III subunit delta' YP_001317986.1 102347 D 293826 CDS YP_001317987.1 150387938 5310128 103330..104226 1 NC_009633.1 PFAM: PSP1 domain protein; KEGG: ctc:CTC00222 tpl protein; PSP1 domain-containing protein 104226 5310128 Amet_0085 Alkaliphilus metalliredigens QYMF PSP1 domain-containing protein YP_001317987.1 103330 D 293826 CDS YP_001317988.1 150387939 5310129 104393..105001 1 NC_009633.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ctc:CTC00146 thiol:disulfide interchange protein TlpA; alkyl hydroperoxide reductase 105001 5310129 Amet_0086 Alkaliphilus metalliredigens QYMF alkyl hydroperoxide reductase YP_001317988.1 104393 D 293826 CDS YP_001317989.1 150387940 5310130 105104..105847 1 NC_009633.1 Heat shock-induced; putative RNA polymerase sigma factor SigI 105847 5310130 Amet_0087 Alkaliphilus metalliredigens QYMF putative RNA polymerase sigma factor SigI YP_001317989.1 105104 D 293826 CDS YP_001317990.1 150387941 5310131 105840..106865 1 NC_009633.1 KEGG: cth:Cthe_2974 hypothetical protein; hypothetical protein 106865 5310131 Amet_0088 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317990.1 105840 D 293826 CDS YP_001317991.1 150387942 5310132 106957..107799 1 NC_009633.1 hypothetical protein 107799 5310132 Amet_0089 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001317991.1 106957 D 293826 CDS YP_001317992.1 150387943 5310133 107951..108718 1 NC_009633.1 PFAM: methyltransferase small; Methyltransferase type 11; KEGG: cth:Cthe_2102 methyltransferase small; methyltransferase small 108718 5310133 Amet_0090 Alkaliphilus metalliredigens QYMF methyltransferase small YP_001317992.1 107951 D 293826 CDS YP_001317993.1 150387944 5310134 108711..109550 1 NC_009633.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: tte:TTE0104 predicted methyltransferases; uroporphyrin-III C/tetrapyrrole methyltransferase 109550 5310134 Amet_0091 Alkaliphilus metalliredigens QYMF uroporphyrin-III C/tetrapyrrole methyltransferase YP_001317993.1 108711 D 293826 CDS YP_001317994.1 150387945 5310135 complement(109662..109901) 1 NC_009633.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cth:Cthe_2100 transcriptional regulator, AbrB family; AbrB family transcriptional regulator 109901 5310135 Amet_0092 Alkaliphilus metalliredigens QYMF AbrB family transcriptional regulator YP_001317994.1 109662 R 293826 CDS YP_001317995.1 150387946 5310136 110289..111707 1 NC_009633.1 TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: tte:TTE0109 tRNA nucleotidyltransferase/poly(A) polymerase; polynucleotide adenylyltransferase/metal dependent phosphohydrolase 111707 5310136 Amet_0093 Alkaliphilus metalliredigens QYMF polynucleotide adenylyltransferase/metal dependent phosphohydrolase YP_001317995.1 110289 D 293826 CDS YP_001317996.1 150387947 5310137 complement(111825..113273) 1 NC_009633.1 TIGRFAM: putative nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase and related; KEGG: dsy:DSY0787 nicotinate phosphoribosyltransferase; putative nicotinate phosphoribosyltransferase 113273 5310137 Amet_0094 Alkaliphilus metalliredigens QYMF putative nicotinate phosphoribosyltransferase YP_001317996.1 111825 R 293826 CDS YP_001317997.1 150387948 5310138 113529..114104 1 NC_009633.1 PFAM: nucleoside recognition domain protein; KEGG: mta:Moth_1356 nucleoside recognition; nucleoside recognition domain-containing protein 114104 5310138 Amet_0095 Alkaliphilus metalliredigens QYMF nucleoside recognition domain-containing protein YP_001317997.1 113529 D 293826 CDS YP_001317998.1 150387949 5310139 114104..114640 1 NC_009633.1 PFAM: nucleoside recognition domain protein; KEGG: ctc:CTC00239 spore maturation protein B; nucleoside recognition domain-containing protein 114640 5310139 Amet_0096 Alkaliphilus metalliredigens QYMF nucleoside recognition domain-containing protein YP_001317998.1 114104 D 293826 CDS YP_001317999.1 150387950 5310140 114705..115664 1 NC_009633.1 PFAM: peptidase S58, DmpA; KEGG: cno:NT01CX_1082 peptidase family T4; peptidase S58, DmpA 115664 5310140 Amet_0097 Alkaliphilus metalliredigens QYMF peptidase S58, DmpA YP_001317999.1 114705 D 293826 CDS YP_001318000.1 150387951 5310141 complement(115941..116507) 1 NC_009633.1 PFAM: Accessory gene regulator B; KEGG: sao:SAOUHSC_02261 accessory gene regulator protein B; accessory gene regulator B 116507 5310141 Amet_0098 Alkaliphilus metalliredigens QYMF accessory gene regulator B YP_001318000.1 115941 R 293826 CDS YP_001318001.1 150387952 5310142 116857..117228 1 NC_009633.1 TIGRFAM: bacteriocin, lactococcin 972 family; KEGG: dsy:DSY2024 hypothetical protein; bacteriocin 117228 5310142 Amet_0099 Alkaliphilus metalliredigens QYMF bacteriocin YP_001318001.1 116857 D 293826 CDS YP_001318002.1 150387953 5310143 117324..119636 1 NC_009633.1 KEGG: cpe:PCP08 hypothetical protein; hypothetical protein 119636 5310143 Amet_0100 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318002.1 117324 D 293826 CDS YP_001318003.1 150387954 5310144 119636..120268 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC02098 transporter; ABC transporter-like protein 120268 5310144 Amet_0101 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001318003.1 119636 D 293826 CDS YP_001318004.1 150387955 5310145 complement(120431..121693) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; KEGG: swo:Swol_2401 signal transduction histidine kinase regulating citrate/malate metabolism; signal transduction histidine kinase regulating citrate/malate metabolism 121693 5310145 Amet_0102 Alkaliphilus metalliredigens QYMF signal transduction histidine kinase regulating citrate/malate metabolism YP_001318004.1 120431 R 293826 CDS YP_001318005.1 150387956 5310146 complement(121716..122486) 1 NC_009633.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: tte:TTE0561 response regulators of cell autolysis; LytTR family two component transcriptional regulator 122486 5310146 Amet_0103 Alkaliphilus metalliredigens QYMF LytTR family two component transcriptional regulator YP_001318005.1 121716 R 293826 CDS YP_001318006.1 150387957 5310147 complement(123522..123989) 1 NC_009633.1 hypothetical protein 123989 5310147 Amet_0104 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318006.1 123522 R 293826 CDS YP_001318007.1 150387958 5310148 124354..124602 1 NC_009633.1 hypothetical protein 124602 5310148 Amet_0105 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318007.1 124354 D 293826 CDS YP_001318008.1 150387959 5310150 complement(125266..126558) 1 NC_009633.1 hypothetical protein 126558 5310150 Amet_0107 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318008.1 125266 R 293826 CDS YP_001318009.1 150387960 5310151 complement(126551..127066) 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: ctc:CTC00553 RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 factor 127066 5310151 Amet_0108 Alkaliphilus metalliredigens QYMF ECF subfamily RNA polymerase sigma-24 factor YP_001318009.1 126551 R 293826 CDS YP_001318010.1 150387961 5310152 complement(127234..127812) 1 NC_009633.1 hypothetical protein 127812 5310152 Amet_0109 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318010.1 127234 R 293826 CDS YP_001318011.1 150387962 5310153 128720..130687 1 NC_009633.1 TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: t-RNA-binding domain protein; tRNA synthetase class I (M); KEGG: cth:Cthe_2096 methionyl-tRNA synthetase; methionyl-tRNA synthetase 130687 5310153 Amet_0110 Alkaliphilus metalliredigens QYMF methionyl-tRNA synthetase YP_001318011.1 128720 D 293826 CDS YP_001318012.1 150387963 5310154 130702..131469 1 NC_009633.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: cth:Cthe_2095 hydrolase, TatD family; TatD family hydrolase 131469 5310154 Amet_0111 Alkaliphilus metalliredigens QYMF TatD family hydrolase YP_001318012.1 130702 D 293826 CDS YP_001318013.1 150387964 5310156 131924..132112 1 NC_009633.1 hypothetical protein 132112 5310156 Amet_0113 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318013.1 131924 D 293826 CDS YP_001318014.1 150387965 5310157 132215..132970 1 NC_009633.1 PFAM: protein of unknown function DUF1568; KEGG: tte:TTE2528 predicted transposase; hypothetical protein 132970 5310157 Amet_0114 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318014.1 132215 D 293826 CDS YP_001318015.1 150387966 5310158 133051..133362 1 NC_009633.1 KEGG: swo:Swol_2283 hypothetical protein; hypothetical protein 133362 5310158 Amet_0115 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318015.1 133051 D 293826 CDS YP_001318016.1 150387967 5310159 133473..133754 1 NC_009633.1 PFAM: IS66 Orf2 family protein; KEGG: swo:Swol_2282 IS66 Orf2 like; IS66 Orf2 family protein 133754 5310159 Amet_0116 Alkaliphilus metalliredigens QYMF IS66 Orf2 family protein YP_001318016.1 133473 D 293826 CDS YP_001318017.1 150387968 5310160 133833..135434 1 NC_009633.1 PFAM: transposase IS66; KEGG: swo:Swol_2281 transposase and inactivated derivatives-like protein; transposase IS66 135434 5310160 Amet_0117 Alkaliphilus metalliredigens QYMF transposase IS66 YP_001318017.1 133833 D 293826 CDS YP_001318018.1 150387969 5310161 135705..137579 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase; transposase, IS4 family protein 137579 5310161 Amet_0118 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001318018.1 135705 D 293826 CDS YP_001318019.1 150387970 5310162 137650..138087 1 NC_009633.1 KEGG: swo:Swol_2192 hypothetical protein; hypothetical protein 138087 5310162 Amet_0119 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318019.1 137650 D 293826 CDS YP_001318020.1 150387971 5310164 complement(138305..138898) 1 NC_009633.1 hypothetical protein 138898 5310164 Amet_0121 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318020.1 138305 R 293826 CDS YP_001318021.1 150387972 5310165 complement(139281..140108) 1 NC_009633.1 hypothetical protein 140108 5310165 Amet_0122 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318021.1 139281 R 293826 CDS YP_001318022.1 150387973 5310166 complement(140128..140961) 1 NC_009633.1 hypothetical protein 140961 5310166 Amet_0123 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318022.1 140128 R 293826 CDS YP_001318023.1 150387974 5310167 complement(141199..141819) 1 NC_009633.1 PFAM: Accessory gene regulator B; KEGG: cth:Cthe_1310 accessory gene regulator B; accessory gene regulator B 141819 5310167 Amet_0124 Alkaliphilus metalliredigens QYMF accessory gene regulator B YP_001318023.1 141199 R 293826 CDS YP_001318024.1 150387975 5310169 142451..142660 1 NC_009633.1 KEGG: swo:Swol_2198 transposase; transposase 142660 5310169 Amet_0126 Alkaliphilus metalliredigens QYMF transposase YP_001318024.1 142451 D 293826 CDS YP_001318025.1 150387976 5310170 142710..143483 1 NC_009633.1 PFAM: protein of unknown function DUF1568; KEGG: tte:TTE2528 predicted transposase; hypothetical protein 143483 5310170 Amet_0127 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318025.1 142710 D 293826 CDS YP_001318026.1 150387977 5310171 143592..144113 1 NC_009633.1 hypothetical protein 144113 5310171 Amet_0128 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318026.1 143592 D 293826 CDS YP_001318027.1 150387978 5310172 144336..144704 1 NC_009633.1 PFAM: regulatory protein, ArsR; KEGG: cth:Cthe_0245 transcriptional regulator, ArsR family; regulatory protein ArsR 144704 5310172 Amet_0129 Alkaliphilus metalliredigens QYMF regulatory protein ArsR YP_001318027.1 144336 D 293826 CDS YP_001318028.1 150387979 5310173 144718..147084 1 NC_009633.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY0829 hypothetical protein; heavy metal translocating P-type ATPase 147084 5310173 Amet_0130 Alkaliphilus metalliredigens QYMF heavy metal translocating P-type ATPase YP_001318028.1 144718 D 293826 CDS YP_001318029.1 150387980 5310174 147192..148448 1 NC_009633.1 PFAM: UV-endonuclease UvdE; Protein of unknown function DUF1722; KEGG: cno:NT01CX_0232 UV DNA damage endonuclease (UV-endonuclease) UvdE; putative UV damage endonuclease 148448 uvsE 5310174 uvsE Alkaliphilus metalliredigens QYMF putative UV damage endonuclease YP_001318029.1 147192 D 293826 CDS YP_001318030.1 150387981 5310175 148749..149123 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; KEGG: swo:Swol_1621 transcriptional regulator, GntR family; regulatory protein GntR 149123 5310175 Amet_0132 Alkaliphilus metalliredigens QYMF regulatory protein GntR YP_001318030.1 148749 D 293826 CDS YP_001318031.1 150387982 5310176 149120..149821 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_1174 ABC transporter related; ABC transporter-like protein 149821 5310176 Amet_0133 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001318031.1 149120 D 293826 CDS YP_001318032.1 150387983 5310177 149808..150611 1 NC_009633.1 KEGG: mta:Moth_1173 hypothetical protein; hypothetical protein 150611 5310177 Amet_0134 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318032.1 149808 D 293826 CDS YP_001318033.1 150387984 5310178 complement(150790..151818) 1 NC_009633.1 PFAM: SCP-like extracellular protein; KEGG: cth:Cthe_0779 copper amine oxidase-like protein; SCP-like extracellular protein 151818 5310178 Amet_0135 Alkaliphilus metalliredigens QYMF SCP-like extracellular protein YP_001318033.1 150790 R 293826 CDS YP_001318034.1 150387985 5310179 152247..153278 1 NC_009633.1 PFAM: protein of unknown function DUF348; 3D domain protein; G5 domain protein; KEGG: tte:TTE0112 hypothetical protein; hypothetical protein 153278 5310179 Amet_0136 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318034.1 152247 D 293826 CDS YP_001318035.1 150387986 5310180 153455..154009 1 NC_009633.1 TIGRFAM: primase/topoisomerase like protein; PFAM: TOPRIM domain protein; SMART: Toprim sub domain protein; KEGG: ctc:CTC00246 DNA primase; primase/topoisomerase-like protein 154009 5310180 Amet_0137 Alkaliphilus metalliredigens QYMF primase/topoisomerase-like protein YP_001318035.1 153455 D 293826 CDS YP_001318036.1 150387987 5310181 154002..154865 1 NC_009633.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 154865 ksgA 5310181 ksgA Alkaliphilus metalliredigens QYMF dimethyladenosine transferase YP_001318036.1 154002 D 293826 CDS YP_001318037.1 150387988 5310182 154949..156295 1 NC_009633.1 KEGG: ctc:CTC00249 hypothetical protein; hypothetical protein 156295 5310182 Amet_0139 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318037.1 154949 D 293826 CDS YP_001318038.1 150387989 5310183 156612..157619 1 NC_009633.1 PFAM: sodium/calcium exchanger membrane region; KEGG: rfr:Rfer_1133 sodium/calcium exchanger membrane protein; sodium/calcium exchanger membrane protein 157619 5310183 Amet_0140 Alkaliphilus metalliredigens QYMF sodium/calcium exchanger membrane protein YP_001318038.1 156612 D 293826 CDS YP_001318039.1 150387990 5310184 complement(157638..158084) 1 NC_009633.1 PFAM: Rhodanese domain protein; KEGG: chy:CHY_0566 rhodanese-like domain protein; rhodanese domain-containing protein 158084 5310184 Amet_0141 Alkaliphilus metalliredigens QYMF rhodanese domain-containing protein YP_001318039.1 157638 R 293826 CDS YP_001318040.1 150387991 5310185 complement(158251..158700) 1 NC_009633.1 KEGG: mta:Moth_1874 hypothetical protein; hypothetical protein 158700 5310185 Amet_0142 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318040.1 158251 R 293826 CDS YP_001318041.1 150387992 5310186 complement(158697..159026) 1 NC_009633.1 KEGG: cth:Cthe_0065 hypothetical protein; hypothetical protein 159026 5310186 Amet_0143 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318041.1 158697 R 293826 CDS YP_001318042.1 150387993 5310187 159128..159556 1 NC_009633.1 hypothetical protein 159556 5310187 Amet_0144 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318042.1 159128 D 293826 CDS YP_001318043.1 150387994 5310188 complement(159718..160185) 1 NC_009633.1 KEGG: cac:CAC0449 hypothetical protein; hypothetical protein 160185 5310188 Amet_0145 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318043.1 159718 R 293826 CDS YP_001318044.1 150387995 5310189 160620..162173 1 NC_009633.1 PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; short chain fatty acid transporter; KEGG: ctc:CTC01323 aminobenzoyl-glutamate transport protein; AbgT transporter 162173 5310189 Amet_0146 Alkaliphilus metalliredigens QYMF AbgT transporter YP_001318044.1 160620 D 293826 CDS YP_001318045.1 150387996 5310190 162673..164226 1 NC_009633.1 PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; KEGG: ctc:CTC01323 aminobenzoyl-glutamate transport protein; putative transporter AbgT 164226 5310190 Amet_0147 Alkaliphilus metalliredigens QYMF putative transporter AbgT YP_001318045.1 162673 D 293826 CDS YP_001318046.1 150387997 5310191 164401..165516 1 NC_009633.1 TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase M42 family protein; peptidase dimerisation domain protein; KEGG: cpe:CPE2463 probable peptidase; peptidase T-like protein 165516 5310191 Amet_0148 Alkaliphilus metalliredigens QYMF peptidase T-like protein YP_001318046.1 164401 D 293826 CDS YP_001318047.1 150387998 5310192 165739..167214 1 NC_009633.1 PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: cth:Cthe_1918 Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase, major region 167214 5310192 Amet_0149 Alkaliphilus metalliredigens QYMF Orn/Lys/Arg decarboxylase, major region YP_001318047.1 165739 D 293826 CDS YP_001318048.1 150387999 5310195 168266..169228 1 NC_009633.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tte:TTE0026 transcriptional regulator; cell envelope-related transcriptional attenuator 169228 5310195 Amet_0152 Alkaliphilus metalliredigens QYMF cell envelope-related transcriptional attenuator YP_001318048.1 168266 D 293826 CDS YP_001318049.1 150388000 5310196 complement(169403..170785) 1 NC_009633.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 170785 murC 5310196 murC Alkaliphilus metalliredigens QYMF UDP-N-acetylmuramate--L-alanine ligase YP_001318049.1 169403 R 293826 CDS YP_001318050.1 150388001 5310197 171020..171841 1 NC_009633.1 TIGRFAM: pur operon repressor; PFAM: phosphoribosyltransferase; purine repressor-like; KEGG: tte:TTE2574 purine operon repressor; pur operon repressor 171841 5310197 Amet_0154 Alkaliphilus metalliredigens QYMF pur operon repressor YP_001318050.1 171020 D 293826 CDS YP_001318051.1 150388002 5310198 171978..172274 1 NC_009633.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 172274 5310198 Amet_0155 Alkaliphilus metalliredigens QYMF regulatory protein SpoVG YP_001318051.1 171978 D 293826 CDS YP_001318052.1 150388003 5310199 172516..173886 1 NC_009633.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 173886 glmU 5310199 glmU Alkaliphilus metalliredigens QYMF bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_001318052.1 172516 D 293826 CDS YP_001318053.1 150388004 5310200 173936..174883 1 NC_009633.1 TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; KEGG: cno:NT01CX_1015 ribose-phosphate pyrophosphokinase; ribose-phosphate pyrophosphokinase 174883 5310200 Amet_0157 Alkaliphilus metalliredigens QYMF ribose-phosphate pyrophosphokinase YP_001318053.1 173936 D 293826 CDS YP_001318054.1 150388005 5310201 174900..175457 1 NC_009633.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 175457 5310201 Amet_0158 Alkaliphilus metalliredigens QYMF peptidyl-tRNA hydrolase YP_001318054.1 174900 D 293826 CDS YP_001318055.1 150388006 5310202 175575..175955 1 NC_009633.1 KEGG: tte:TTE2566 hypothetical protein; hypothetical protein 175955 5310202 Amet_0159 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318055.1 175575 D 293826 CDS YP_001318056.1 150388007 5310203 176043..179567 1 NC_009633.1 TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: tte:TTE2565 Transcription-repair coupling factor - superfamily II helicase; transcription-repair coupling factor 179567 5310203 Amet_0160 Alkaliphilus metalliredigens QYMF transcription-repair coupling factor YP_001318056.1 176043 D 293826 CDS YP_001318057.1 150388008 5310204 179607..180566 1 NC_009633.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: tte:TTE2564 parvulin-like peptidyl-prolyl isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 180566 5310204 Amet_0161 Alkaliphilus metalliredigens QYMF PpiC-type peptidyl-prolyl cis-trans isomerase YP_001318057.1 179607 D 293826 CDS YP_001318058.1 150388009 5310205 180682..181233 1 NC_009633.1 TIGRFAM: transcriptional regulator, AbrB family; Sporulation stage V, protein T; PFAM: SpoVT/AbrB domain protein; KEGG: mta:Moth_0083 transcriptional regulator, AbrB family; AbrB family transcriptional regulator 181233 5310205 Amet_0162 Alkaliphilus metalliredigens QYMF AbrB family transcriptional regulator YP_001318058.1 180682 D 293826 CDS YP_001318059.1 150388010 5310206 181462..183060 1 NC_009633.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: swo:Swol_0081 stage V sporulation protein B; polysaccharide biosynthesis protein 183060 5310206 Amet_0163 Alkaliphilus metalliredigens QYMF polysaccharide biosynthesis protein YP_001318059.1 181462 D 293826 CDS YP_001318060.1 150388011 5310207 183074..184534 1 NC_009633.1 TIGRFAM: MazG family protein; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; MazG nucleotide pyrophosphohydrolase; KEGG: cpr:CPR_2489 MazG family protein; MazG family protein 184534 5310207 Amet_0164 Alkaliphilus metalliredigens QYMF MazG family protein YP_001318060.1 183074 D 293826 CDS YP_001318061.1 150388012 5310208 184646..184924 1 NC_009633.1 PFAM: histone family protein DNA-binding protein; KEGG: tte:TTE2453 Bacterial nucleoid DNA-binding protein; histone family protein DNA-binding protein 184924 5310208 Amet_0165 Alkaliphilus metalliredigens QYMF histone family protein DNA-binding protein YP_001318061.1 184646 D 293826 CDS YP_001318062.1 150388013 5310209 184973..185221 1 NC_009633.1 PFAM: RNA-binding S4 domain protein; KEGG: cpf:CPF_2801 S4 domain protein; RNA-binding S4 domain-containing protein 185221 5310209 Amet_0166 Alkaliphilus metalliredigens QYMF RNA-binding S4 domain-containing protein YP_001318062.1 184973 D 293826 CDS YP_001318063.1 150388014 5310210 185320..185640 1 NC_009633.1 KEGG: dsy:DSY3280 hypothetical protein; hypothetical protein 185640 5310210 Amet_0167 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318063.1 185320 D 293826 CDS YP_001318064.1 150388015 5310211 185796..186791 1 NC_009633.1 TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: tte:TTE2451 sporulation protein and related proteins; SpoIID/LytB domain-containing protein 186791 5310211 Amet_0168 Alkaliphilus metalliredigens QYMF SpoIID/LytB domain-containing protein YP_001318064.1 185796 D 293826 CDS YP_001318065.1 150388016 5310212 186860..187150 1 NC_009633.1 PFAM: YabP family protein; KEGG: tte:TTE2450 hypothetical protein; YabP family protein 187150 5310212 Amet_0169 Alkaliphilus metalliredigens QYMF YabP family protein YP_001318065.1 186860 D 293826 CDS YP_001318066.1 150388017 5310213 187283..187792 1 NC_009633.1 TIGRFAM: Spore cortex biosynthesis protein YabQ; KEGG: tte:TTE2446 hypothetical protein; spore cortex biosynthesis protein YabQ 187792 5310213 Amet_0170 Alkaliphilus metalliredigens QYMF spore cortex biosynthesis protein YabQ YP_001318066.1 187283 D 293826 CDS YP_001318067.1 150388018 5310214 187819..188121 1 NC_009633.1 PFAM: Septum formation initiator; septum formation initiator 188121 5310214 Amet_0171 Alkaliphilus metalliredigens QYMF septum formation initiator YP_001318067.1 187819 D 293826 CDS YP_001318068.1 150388019 5310215 188282..188698 1 NC_009633.1 PFAM: RNA binding S1 domain protein; KEGG: cth:Cthe_2662 RNA binding S1; RNA-binding S1 domain-containing protein 188698 5310215 Amet_0172 Alkaliphilus metalliredigens QYMF RNA-binding S1 domain-containing protein YP_001318068.1 188282 D 293826 CDS YP_001318069.1 150388020 5310216 189070..191472 1 NC_009633.1 KEGG: cth:Cthe_2681 serine phosphatase; TIGRFAM: Sporulation stage II, protein E; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; sporulation stage II, protein E 191472 5310216 Amet_0173 Alkaliphilus metalliredigens QYMF sporulation stage II, protein E YP_001318069.1 189070 D 293826 CDS YP_001318070.1 150388021 5310217 complement(191711..192133) 1 NC_009633.1 PFAM: helix-turn-helix domain protein; KEGG: tte:TTE2174 predicted transcriptional regulator; XRE family transcriptional regulator 192133 5310217 Amet_0174 Alkaliphilus metalliredigens QYMF XRE family transcriptional regulator YP_001318070.1 191711 R 293826 CDS YP_001318071.1 150388022 5310218 192289..192516 1 NC_009633.1 SMART: helix-turn-helix domain protein; KEGG: tte:TTE2173 hypothetical protein; helix-turn-helix domain-containing protein 192516 5310218 Amet_0175 Alkaliphilus metalliredigens QYMF helix-turn-helix domain-containing protein YP_001318071.1 192289 D 293826 CDS YP_001318072.1 150388023 5310219 192553..192720 1 NC_009633.1 hypothetical protein 192720 5310219 Amet_0176 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318072.1 192553 D 293826 CDS YP_001318073.1 150388024 5310220 193020..194423 1 NC_009633.1 TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; Peptidoglycan-binding domain 1 protein; peptidase S41; KEGG: cth:Cthe_1930 carboxyl-terminal protease; carboxyl-terminal protease 194423 5310220 Amet_0177 Alkaliphilus metalliredigens QYMF carboxyl-terminal protease YP_001318073.1 193020 D 293826 CDS YP_001318074.1 150388025 5310221 complement(194513..195079) 1 NC_009633.1 PFAM: S-layer domain protein; KEGG: cth:Cthe_2384 S-layer-like domain containing protein; S-layer protein 195079 5310221 Amet_0178 Alkaliphilus metalliredigens QYMF S-layer protein YP_001318074.1 194513 R 293826 CDS YP_001318075.1 150388026 5310222 complement(195233..197347) 1 NC_009633.1 hypothetical protein 197347 5310222 Amet_0179 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318075.1 195233 R 293826 CDS YP_001318076.1 150388027 5310223 197652..204251 1 NC_009633.1 PFAM: cell surface receptor IPT/TIG domain protein; Fibronectin, type III domain protein; KEGG: tte:TTE0165 hypothetical protein; fibronectin type III domain-containing protein 204251 5310223 Amet_0180 Alkaliphilus metalliredigens QYMF fibronectin type III domain-containing protein YP_001318076.1 197652 D 293826 CDS YP_001318077.1 150388028 5310224 204333..207137 1 NC_009633.1 PFAM: S-layer domain protein; KEGG: tte:TTE0166 S-layer homology domain; S-layer protein 207137 5310224 Amet_0181 Alkaliphilus metalliredigens QYMF S-layer protein YP_001318077.1 204333 D 293826 CDS YP_001318078.1 150388029 5310225 207154..208629 1 NC_009633.1 PFAM: S-layer domain protein; KEGG: tte:TTE0167 S-layer homology domain; S-layer protein 208629 5310225 Amet_0182 Alkaliphilus metalliredigens QYMF S-layer protein YP_001318078.1 207154 D 293826 CDS YP_001318079.1 150388030 5310226 208903..210507 1 NC_009633.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 210507 pyrG 5310226 pyrG Alkaliphilus metalliredigens QYMF CTP synthetase YP_001318079.1 208903 D 293826 CDS YP_001318080.1 150388031 5310227 211296..213587 1 NC_009633.1 PFAM: copper amine oxidase domain protein; KEGG: mta:Moth_2343 copper amine oxidase-like; copper amine oxidase domain-containing protein 213587 5310227 Amet_0184 Alkaliphilus metalliredigens QYMF copper amine oxidase domain-containing protein YP_001318080.1 211296 D 293826 CDS YP_001318081.1 150388032 5310228 213738..214517 1 NC_009633.1 KEGG: rno:690765 hypothetical protein LOC690765; hypothetical protein 214517 5310228 Amet_0185 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318081.1 213738 D 293826 CDS YP_001318082.1 150388033 5310229 214933..216078 1 NC_009633.1 KEGG: swo:Swol_0134 hypothetical protein; hypothetical protein 216078 5310229 Amet_0186 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318082.1 214933 D 293826 CDS YP_001318083.1 150388034 5310230 216408..217619 1 NC_009633.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3360 hypothetical protein; RND family efflux transporter MFP subunit 217619 5310230 Amet_0187 Alkaliphilus metalliredigens QYMF RND family efflux transporter MFP subunit YP_001318083.1 216408 D 293826 CDS YP_001318084.1 150388035 5310231 217623..220772 1 NC_009633.1 PFAM: acriflavin resistance protein; KEGG: dsy:DSY3359 hypothetical protein; acriflavin resistance protein 220772 5310231 Amet_0188 Alkaliphilus metalliredigens QYMF acriflavin resistance protein YP_001318084.1 217623 D 293826 CDS YP_001318085.1 150388036 5310232 220777..221364 1 NC_009633.1 PFAM: regulatory protein, TetR; KEGG: swo:Swol_0177 putative transcriptional regulator, TetR family; TetR family transcriptional regulator 221364 5310232 Amet_0189 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001318085.1 220777 D 293826 CDS YP_001318086.1 150388037 5310233 221516..223780 1 NC_009633.1 PFAM: Spore coat protein CotH; KEGG: cth:Cthe_0239 cellulosome enzyme, dockerin type I; spore coat protein CotH 223780 5310233 Amet_0190 Alkaliphilus metalliredigens QYMF spore coat protein CotH YP_001318086.1 221516 D 293826 CDS YP_001318087.1 150388038 5310234 223887..225806 1 NC_009633.1 PFAM: S-layer domain protein; KEGG: sth:STH3168 S-layer associated protein, putataive; S-layer protein 225806 5310234 Amet_0191 Alkaliphilus metalliredigens QYMF S-layer protein YP_001318087.1 223887 D 293826 CDS YP_001318088.1 150388039 5310235 226053..227249 1 NC_009633.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: cth:Cthe_2347 lipopolysaccharide biosynthesis; lipopolysaccharide biosynthesis protein 227249 5310235 Amet_0192 Alkaliphilus metalliredigens QYMF lipopolysaccharide biosynthesis protein YP_001318088.1 226053 D 293826 CDS YP_001318089.1 150388040 5310236 227335..230301 1 NC_009633.1 PFAM: TPR repeat-containing protein; O-antigen polymerase; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tte:TTE0644 TPR-repeat-containing proteins; O-antigen polymerase 230301 5310236 Amet_0193 Alkaliphilus metalliredigens QYMF O-antigen polymerase YP_001318089.1 227335 D 293826 CDS YP_001318090.1 150388041 5310237 230434..230949 1 NC_009633.1 PFAM: regulatory protein, MarR; KEGG: gme:Gmet_2889 hypothetical protein; regulatory protein MarR 230949 5310237 Amet_0194 Alkaliphilus metalliredigens QYMF regulatory protein MarR YP_001318090.1 230434 D 293826 CDS YP_001318091.1 150388042 5310238 230975..231376 1 NC_009633.1 TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein, HI0074; KEGG: tte:TTE1987 hypothetical protein; nucleotidyltransferase substrate binding protein 231376 5310238 Amet_0195 Alkaliphilus metalliredigens QYMF nucleotidyltransferase substrate binding protein YP_001318091.1 230975 D 293826 CDS YP_001318092.1 150388043 5310241 231835..232173 1 NC_009633.1 KEGG: tte:TTE1265 type IV pilus assembly protein PilA; hypothetical protein 232173 5310241 Amet_0198 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318092.1 231835 D 293826 CDS YP_001318093.1 150388044 5310242 232387..233121 1 NC_009633.1 hypothetical protein 233121 5310242 Amet_0199 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318093.1 232387 D 293826 CDS YP_001318094.1 150388045 5310243 233140..234666 1 NC_009633.1 KEGG: rde:RD1_A0043 RC169; hypothetical protein 234666 5310243 Amet_0200 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318094.1 233140 D 293826 CDS YP_001318095.1 150388046 5310244 234714..235337 1 NC_009633.1 PFAM: sugar transferase; KEGG: bha:BH3716 galactosyltransferase; sugar transferase 235337 5310244 Amet_0201 Alkaliphilus metalliredigens QYMF sugar transferase YP_001318095.1 234714 D 293826 CDS YP_001318096.1 150388047 5310245 235359..237137 1 NC_009633.1 PFAM: Heparinase II/III family protein; KEGG: gme:Gmet_1501 heparinase II/III-like; heparinase II/III family protein 237137 5310245 Amet_0202 Alkaliphilus metalliredigens QYMF heparinase II/III family protein YP_001318096.1 235359 D 293826 CDS YP_001318097.1 150388048 5310246 237134..238351 1 NC_009633.1 PFAM: glycosyl transferase, group 1; KEGG: gme:Gmet_1502 glycosyl transferase, group 1; group 1 glycosyl transferase 238351 5310246 Amet_0203 Alkaliphilus metalliredigens QYMF group 1 glycosyl transferase YP_001318097.1 237134 D 293826 CDS YP_001318098.1 150388049 5310247 238363..239223 1 NC_009633.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility C-terminal domain; KEGG: pme:NATL1_08611 hypothetical protein; 3-beta hydroxysteroid dehydrogenase/isomerase 239223 5310247 Amet_0204 Alkaliphilus metalliredigens QYMF 3-beta hydroxysteroid dehydrogenase/isomerase YP_001318098.1 238363 D 293826 CDS YP_001318099.1 150388050 5310248 239288..240424 1 NC_009633.1 PFAM: glycosyl transferase, group 1; KEGG: pab:PAB1604 LPS biosynthesis RfbU related protein; group 1 glycosyl transferase 240424 5310248 Amet_0205 Alkaliphilus metalliredigens QYMF group 1 glycosyl transferase YP_001318099.1 239288 D 293826 CDS YP_001318100.1 150388051 5310249 240436..241665 1 NC_009633.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase-like; KEGG: cpf:CPF_0468 UDP-glucose/GDP-mannose dehydrogenase family; UDP-glucose/GDP-mannose dehydrogenase 241665 5310249 Amet_0206 Alkaliphilus metalliredigens QYMF UDP-glucose/GDP-mannose dehydrogenase YP_001318100.1 240436 D 293826 CDS YP_001318101.1 150388052 5310250 241682..242773 1 NC_009633.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: spn:SP_0357 UDP-N-acetylglucosamine-2-epimerase; UDP-N-acetylglucosamine 2-epimerase 242773 5310250 Amet_0207 Alkaliphilus metalliredigens QYMF UDP-N-acetylglucosamine 2-epimerase YP_001318101.1 241682 D 293826 CDS YP_001318102.1 150388053 5310251 242913..243170 1 NC_009633.1 KEGG: cth:Cthe_2340 UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase 243170 5310251 Amet_0208 Alkaliphilus metalliredigens QYMF UDP-glucose/GDP-mannose dehydrogenase YP_001318102.1 242913 D 293826 CDS YP_001318103.1 150388054 5310252 243195..244343 1 NC_009633.1 PFAM: glycosyl transferase, group 1; KEGG: pac:PPA0673 putative glycosyl transferase group 1; group 1 glycosyl transferase 244343 5310252 Amet_0209 Alkaliphilus metalliredigens QYMF group 1 glycosyl transferase YP_001318103.1 243195 D 293826 CDS YP_001318104.1 150388055 5310253 244340..245611 1 NC_009633.1 PFAM: O-antigen polymerase; KEGG: bsu:BG12692 biosynthesis of teichuronic acid, polymerization; O-antigen polymerase 245611 5310253 Amet_0210 Alkaliphilus metalliredigens QYMF O-antigen polymerase YP_001318104.1 244340 D 293826 CDS YP_001318105.1 150388056 5310254 245637..246746 1 NC_009633.1 KEGG: bad:BAD_1383 hypothetical protein; hypothetical protein 246746 5310254 Amet_0211 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318105.1 245637 D 293826 CDS YP_001318106.1 150388057 5310255 246845..248014 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dps:DPPB80 related to F420H2-dehydrogenase, beta subunit; 4Fe-4S ferredoxin 248014 5310255 Amet_0212 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001318106.1 246845 D 293826 CDS YP_001318107.1 150388058 5310256 248199..248771 1 NC_009633.1 hypothetical protein 248771 5310256 Amet_0213 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318107.1 248199 D 293826 CDS YP_001318108.1 150388059 5310257 248847..250412 1 NC_009633.1 TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: tte:TTE0176 uncharacterized membrane protein, putative virulence factor; integral membrane protein MviN 250412 5310257 Amet_0214 Alkaliphilus metalliredigens QYMF integral membrane protein MviN YP_001318108.1 248847 D 293826 CDS YP_001318109.1 150388060 5310258 250607..251038 1 NC_009633.1 KEGG: bfs:BF2224 hypothetical protein; hypothetical protein 251038 5310258 Amet_0215 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318109.1 250607 D 293826 CDS YP_001318110.1 150388061 5310259 251357..252193 1 NC_009633.1 PFAM: protein of unknown function DUF1568; KEGG: swo:Swol_0164 transposase and inactivated derivatives-like protein; hypothetical protein 252193 5310259 Amet_0216 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318110.1 251357 D 293826 CDS YP_001318111.1 150388062 5310260 252280..253194 1 NC_009633.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tte:TTE0736 transcriptional regulator; cell envelope-related transcriptional attenuator 253194 5310260 Amet_0217 Alkaliphilus metalliredigens QYMF cell envelope-related transcriptional attenuator YP_001318111.1 252280 D 293826 CDS YP_001318112.1 150388063 5310261 253695..254633 1 NC_009633.1 KEGG: dsy:DSY2001 hypothetical protein; hypothetical protein 254633 5310261 Amet_0218 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318112.1 253695 D 293826 CDS YP_001318113.1 150388064 5310262 254937..255203 1 NC_009633.1 hypothetical protein 255203 5310262 Amet_0219 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318113.1 254937 D 293826 CDS YP_001318114.1 150388065 5310263 255586..257124 1 NC_009633.1 TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; KEGG: tte:TTE1455 predicted ATPase with chaperone activity; Mg chelatase subunit ChlI 257124 5310263 Amet_0220 Alkaliphilus metalliredigens QYMF Mg chelatase subunit ChlI YP_001318114.1 255586 D 293826 CDS YP_001318115.1 150388066 5310264 257136..258272 1 NC_009633.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: cth:Cthe_0459 DNA protecting protein DprA; DNA protecting protein DprA 258272 5310264 Amet_0221 Alkaliphilus metalliredigens QYMF DNA protecting protein DprA YP_001318115.1 257136 D 293826 CDS YP_001318116.1 150388067 5310265 258377..259870 1 NC_009633.1 PFAM: AAA-4 family protein; KEGG: mbu:Mbur_0507 divergent AAA ATPase; putative transcriptional regulator 259870 5310265 Amet_0222 Alkaliphilus metalliredigens QYMF putative transcriptional regulator YP_001318116.1 258377 D 293826 CDS YP_001318117.1 150388068 5310266 259919..260167 1 NC_009633.1 hypothetical protein 260167 5310266 Amet_0223 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318117.1 259919 D 293826 CDS YP_001318118.1 150388069 5310267 260697..263663 1 NC_009633.1 KEGG: stm:STM4489 putative DNA helicases; putative DNA helicase 263663 5310267 Amet_0224 Alkaliphilus metalliredigens QYMF putative DNA helicase YP_001318118.1 260697 D 293826 CDS YP_001318119.1 150388070 5310268 263768..265660 1 NC_009633.1 TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; Propionate catabolism activator domain protein; ATPase associated with various cellular activities, AAA_5; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: chy:CHY_1254 sigma-54 dependent transcriptional regulator; putative PAS/PAC sensor protein 265660 5310268 Amet_0225 Alkaliphilus metalliredigens QYMF putative PAS/PAC sensor protein YP_001318119.1 263768 D 293826 CDS YP_001318120.1 150388071 5310269 265925..267202 1 NC_009633.1 PFAM: type III effector Hrp-dependent outers; KEGG: mta:Moth_0726 type III effector Hrp-dependent outers; Hrp-dependent type III effector protein 267202 5310269 Amet_0226 Alkaliphilus metalliredigens QYMF Hrp-dependent type III effector protein YP_001318120.1 265925 D 293826 CDS YP_001318121.1 150388072 5310270 267254..268414 1 NC_009633.1 PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: msu:MS0069 EutG protein; iron-containing alcohol dehydrogenase 268414 5310270 Amet_0227 Alkaliphilus metalliredigens QYMF iron-containing alcohol dehydrogenase YP_001318121.1 267254 D 293826 CDS YP_001318122.1 150388073 5310271 268426..269466 1 NC_009633.1 TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; KEGG: mta:Moth_0727 4-hydroxythreonine-4-phosphate dehydrogenase; 4-hydroxythreonine-4-phosphate dehydrogenase 269466 5310271 Amet_0228 Alkaliphilus metalliredigens QYMF 4-hydroxythreonine-4-phosphate dehydrogenase YP_001318122.1 268426 D 293826 CDS YP_001318123.1 150388074 5310272 269498..270385 1 NC_009633.1 TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: msu:MS0067 DapA protein; dihydrodipicolinate synthase 270385 5310272 Amet_0229 Alkaliphilus metalliredigens QYMF dihydrodipicolinate synthase YP_001318123.1 269498 D 293826 CDS YP_001318124.1 150388075 5310273 270564..271649 1 NC_009633.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: eba:p2A97 hypothetical protein, putative periplasmic binding protein; TRAP transporter solute receptor TAXI family protein 271649 5310273 Amet_0230 Alkaliphilus metalliredigens QYMF TRAP transporter solute receptor TAXI family protein YP_001318124.1 270564 D 293826 CDS YP_001318125.1 150388076 5310274 271776..273716 1 NC_009633.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dsy:DSY0650 hypothetical protein; TRAP transporter, 4TM/12TM fusion protein 273716 5310274 Amet_0231 Alkaliphilus metalliredigens QYMF TRAP transporter, 4TM/12TM fusion protein YP_001318125.1 271776 D 293826 CDS YP_001318126.1 150388077 5310275 274037..274888 1 NC_009633.1 PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: tte:TTE0676 hypothetical protein; plasmid pRiA4b ORF-3 family protein 274888 5310275 Amet_0232 Alkaliphilus metalliredigens QYMF plasmid pRiA4b ORF-3 family protein YP_001318126.1 274037 D 293826 CDS YP_001318127.1 150388078 5310277 275426..276346 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_2297 daunorubicin resistance ABC transporter ATP-binding subunit; ABC transporter-like protein 276346 5310277 Amet_0234 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001318127.1 275426 D 293826 CDS YP_001318128.1 150388079 5310278 276348..277184 1 NC_009633.1 PFAM: ABC-2 type transporter; KEGG: mbu:Mbur_0388 ABC efflux pump, inner membrane subunit; ABC transporter 277184 5310278 Amet_0235 Alkaliphilus metalliredigens QYMF ABC transporter YP_001318128.1 276348 D 293826 CDS YP_001318129.1 150388080 5310280 277746..278450 1 NC_009633.1 KEGG: cth:Cthe_2132 abortive infection protein, putative; abortive infection protein 278450 5310280 Amet_0237 Alkaliphilus metalliredigens QYMF abortive infection protein YP_001318129.1 277746 D 293826 CDS YP_001318130.1 150388081 5310281 278483..278806 1 NC_009633.1 hypothetical protein 278806 5310281 Amet_0238 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318130.1 278483 D 293826 CDS YP_001318131.1 150388082 5310282 complement(279009..280457) 1 NC_009633.1 KEGG: bcz:BCZK4937 hypothetical protein; hypothetical protein 280457 5310282 Amet_0239 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318131.1 279009 R 293826 CDS YP_001318132.1 150388083 5310283 complement(280495..282039) 1 NC_009633.1 KEGG: btl:BALH_4741 membrane protein; hypothetical protein 282039 5310283 Amet_0240 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318132.1 280495 R 293826 CDS YP_001318133.1 150388084 5310284 complement(282058..282546) 1 NC_009633.1 KEGG: bat:BAS5094 hypothetical protein; hypothetical protein 282546 5310284 Amet_0241 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318133.1 282058 R 293826 CDS YP_001318134.1 150388085 5310285 282958..283149 1 NC_009633.1 KEGG: dsy:DSY2129 hypothetical protein; hypothetical protein 283149 5310285 Amet_0242 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318134.1 282958 D 293826 CDS YP_001318135.1 150388086 5310286 283240..283728 1 NC_009633.1 PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: tte:TTE0676 hypothetical protein; plasmid pRiA4b ORF-3 family protein 283728 5310286 Amet_0243 Alkaliphilus metalliredigens QYMF plasmid pRiA4b ORF-3 family protein YP_001318135.1 283240 D 293826 CDS YP_001318136.1 150388087 5310287 283721..283990 1 NC_009633.1 hypothetical protein 283990 5310287 Amet_0244 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318136.1 283721 D 293826 CDS YP_001318137.1 150388088 5310288 284184..284462 1 NC_009633.1 KEGG: cth:Cthe_0703 hypothetical protein; hypothetical protein 284462 5310288 Amet_0245 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318137.1 284184 D 293826 CDS YP_001318138.1 150388089 5310289 284745..286013 1 NC_009633.1 hypothetical protein 286013 5310289 Amet_0246 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318138.1 284745 D 293826 CDS YP_001318139.1 150388090 5310290 complement(286228..286686) 1 NC_009633.1 PFAM: CheC domain protein; KEGG: cac:CAC0586 CheX protein (uncharacterized ORF in chemotaxis operon); CheC domain-containing protein 286686 5310290 Amet_0247 Alkaliphilus metalliredigens QYMF CheC domain-containing protein YP_001318139.1 286228 R 293826 CDS YP_001318140.1 150388091 5310291 complement(286677..287543) 1 NC_009633.1 PFAM: response regulator receiver; KEGG: cac:CAC0585 N-terminal CheY reciever domain fused to C-terminal uncharacterized CheX-like domain; response regulator receiver protein 287543 5310291 Amet_0248 Alkaliphilus metalliredigens QYMF response regulator receiver protein YP_001318140.1 286677 R 293826 CDS YP_001318141.1 150388092 5310292 complement(287778..289841) 1 NC_009633.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: cac:CAC2821 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 289841 5310292 Amet_0249 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001318141.1 287778 R 293826 CDS YP_001318142.1 150388093 5310293 290395..290745 1 NC_009633.1 PFAM: microcompartments protein; KEGG: ctc:CTC02181 ethanolamine utilization protein eutS; microcompartments protein 290745 5310293 Amet_0250 Alkaliphilus metalliredigens QYMF microcompartments protein YP_001318142.1 290395 D 293826 CDS YP_001318143.1 150388094 5310294 290757..291185 1 NC_009633.1 TIGRFAM: ethanolamine utilization protein, EutP; KEGG: ctc:CTC02180 ethanolamine utilization protein eutP; ethanolamine utilization protein, EutP 291185 5310294 Amet_0251 Alkaliphilus metalliredigens QYMF ethanolamine utilization protein, EutP YP_001318143.1 290757 D 293826 CDS YP_001318144.1 150388095 5310295 291290..291859 1 NC_009633.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: ctc:CTC02179 ethanolamine utilization response regulator; response regulator receiver/ANTAR domain-containing protein 291859 5310295 Amet_0252 Alkaliphilus metalliredigens QYMF response regulator receiver/ANTAR domain-containing protein YP_001318144.1 291290 D 293826 CDS YP_001318145.1 150388096 5310296 291882..293291 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, dimerisation/phosphoacceptor; KEGG: cac:CAC2720 sensory protein containing histidine kinase, PAS anf GAF domains; signal transduction histidine kinase 293291 5310296 Amet_0253 Alkaliphilus metalliredigens QYMF signal transduction histidine kinase YP_001318145.1 291882 D 293826 CDS YP_001318146.1 150388097 5310297 293398..294831 1 NC_009633.1 ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase 294831 eutA 5310297 eutA Alkaliphilus metalliredigens QYMF reactivating factor for ethanolamine ammonia lyase YP_001318146.1 293398 D 293826 CDS YP_001318147.1 150388098 5310298 294851..296218 1 NC_009633.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: cpf:CPF_0891 ethanolamine ammonia-lyase, large subunit; ethanolamine ammonia lyase large subunit 296218 5310298 Amet_0255 Alkaliphilus metalliredigens QYMF ethanolamine ammonia lyase large subunit YP_001318147.1 294851 D 293826 CDS YP_001318148.1 150388099 5310299 296244..297143 1 NC_009633.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 297143 5310299 Amet_0256 Alkaliphilus metalliredigens QYMF ethanolamine ammonia-lyase small subunit YP_001318148.1 296244 D 293826 CDS YP_001318149.1 150388100 5310300 297167..297820 1 NC_009633.1 PFAM: microcompartments protein; KEGG: fnu:FN0081 ethanolamine utilization protein eutL; microcompartments protein 297820 5310300 Amet_0257 Alkaliphilus metalliredigens QYMF microcompartments protein YP_001318149.1 297167 D 293826 CDS YP_001318150.1 150388101 5310301 297838..298458 1 NC_009633.1 PFAM: microcompartments protein; KEGG: lmo:lmo1178 hypothetical protein; microcompartments protein 298458 5310301 Amet_0258 Alkaliphilus metalliredigens QYMF microcompartments protein YP_001318150.1 297838 D 293826 CDS YP_001318151.1 150388102 5310302 298459..299910 1 NC_009633.1 TIGRFAM: acetaldehyde dehydrogenase (acetylating); KEGG: dde:Dde_3279 aldehyde dehydrogenase, putative; acetaldehyde dehydrogenase 299910 5310302 Amet_0259 Alkaliphilus metalliredigens QYMF acetaldehyde dehydrogenase YP_001318151.1 298459 D 293826 CDS YP_001318152.1 150388103 5310303 299934..300218 1 NC_009633.1 PFAM: microcompartments protein; KEGG: lwe:lwe1138 propanediol/ethanolamine utilization protein; microcompartments protein 300218 5310303 Amet_0260 Alkaliphilus metalliredigens QYMF microcompartments protein YP_001318152.1 299934 D 293826 CDS YP_001318153.1 150388104 5310304 300284..301057 1 NC_009633.1 PFAM: cobalamin adenosyltransferase; KEGG: ctc:CTC02171 ethanolamine utilization protein; cobalamin adenosyltransferase 301057 5310304 Amet_0261 Alkaliphilus metalliredigens QYMF cobalamin adenosyltransferase YP_001318153.1 300284 D 293826 CDS YP_001318154.1 150388105 5310305 301076..301714 1 NC_009633.1 PFAM: Propanediol utilization protein; KEGG: ssa:SSA_0527 propanediol utilization protein PduL; propanediol utilization protein 301714 5310305 Amet_0262 Alkaliphilus metalliredigens QYMF propanediol utilization protein YP_001318154.1 301076 D 293826 CDS YP_001318155.1 150388106 5310306 301730..302551 1 NC_009633.1 TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: ctc:CTC02168 ethanolamine utilization protein EutJ; ethanolamine utilization protein EutJ family protein 302551 5310306 Amet_0263 Alkaliphilus metalliredigens QYMF ethanolamine utilization protein EutJ family protein YP_001318155.1 301730 D 293826 CDS YP_001318156.1 150388107 5310307 302563..303300 1 NC_009633.1 KEGG: ctc:CTC02167 putative ethanolamine utilization protein; hypothetical protein 303300 5310307 Amet_0264 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318156.1 302563 D 293826 CDS YP_001318157.1 150388108 5310308 303319..303603 1 NC_009633.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: dde:Dde_3273 ethanolamine utilization protein EutN; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 303603 5310308 Amet_0265 Alkaliphilus metalliredigens QYMF ethanolamine utilization protein EutN/carboxysome structural protein Ccml YP_001318157.1 303319 D 293826 CDS YP_001318158.1 150388109 5310309 303615..304961 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: lmf:LMOf2365_1149 PduS protein; respiratory-chain NADH dehydrogenase domain-containing protein 304961 5310309 Amet_0266 Alkaliphilus metalliredigens QYMF respiratory-chain NADH dehydrogenase domain-containing protein YP_001318158.1 303615 D 293826 CDS YP_001318159.1 150388110 5310310 304958..305506 1 NC_009633.1 PFAM: microcompartments protein; KEGG: maq:Maqu_1244 microcompartments protein; microcompartments protein 305506 5310310 Amet_0267 Alkaliphilus metalliredigens QYMF microcompartments protein YP_001318159.1 304958 D 293826 CDS YP_001318160.1 150388111 5310311 305531..306634 1 NC_009633.1 PFAM: Ethanolamine utilisation protein, EutH; KEGG: lin:lin1150 similar to ethanolamine utilization protein EutH - Escherichia coli; ethanolamine utilisation protein, EutH 306634 5310311 Amet_0268 Alkaliphilus metalliredigens QYMF ethanolamine utilisation protein, EutH YP_001318160.1 305531 D 293826 CDS YP_001318161.1 150388112 5310312 306753..307928 1 NC_009633.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: ctc:CTC02182 alcetaldehyde dehydrogenase or NADPH-dependent butanol dehydrogenase; iron-containing alcohol dehydrogenase 307928 5310312 Amet_0269 Alkaliphilus metalliredigens QYMF iron-containing alcohol dehydrogenase YP_001318161.1 306753 D 293826 CDS YP_001318162.1 150388113 5310313 308423..308977 1 NC_009633.1 KEGG: ctc:CTC01854 transcriptional regulator; TetR family transcriptional regulator 308977 5310313 Amet_0270 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001318162.1 308423 D 293826 CDS YP_001318163.1 150388114 5310314 309097..310761 1 NC_009633.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen 310761 5310314 Amet_0271 Alkaliphilus metalliredigens QYMF myosin-cross-reactive antigen YP_001318163.1 309097 D 293826 CDS YP_001318164.1 150388115 5310315 310773..311063 1 NC_009633.1 hypothetical protein 311063 5310315 Amet_0272 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318164.1 310773 D 293826 CDS YP_001318165.1 150388116 5310316 311419..312342 1 NC_009633.1 hypothetical protein 312342 5310316 Amet_0273 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318165.1 311419 D 293826 CDS YP_001318166.1 150388117 5310317 312330..312653 1 NC_009633.1 hypothetical protein 312653 5310317 Amet_0274 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318166.1 312330 D 293826 CDS YP_001318167.1 150388118 5310318 312825..312986 1 NC_009633.1 hypothetical protein 312986 5310318 Amet_0275 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318167.1 312825 D 293826 CDS YP_001318168.1 150388119 5310319 313020..313223 1 NC_009633.1 hypothetical protein 313223 5310319 Amet_0276 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318168.1 313020 D 293826 CDS YP_001318169.1 150388120 5310320 313292..315139 1 NC_009633.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; CoA-binding domain protein; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: cth:Cthe_2334 polysaccharide biosynthesis protein CapD; polysaccharide biosynthesis protein CapD 315139 5310320 Amet_0277 Alkaliphilus metalliredigens QYMF polysaccharide biosynthesis protein CapD YP_001318169.1 313292 D 293826 CDS YP_001318170.1 150388121 5310321 315467..315841 1 NC_009633.1 PFAM: putative small multi-drug export; KEGG: ctc:CTC02518 putative small multi-drug export protein; putative small multi-drug export 315841 5310321 Amet_0278 Alkaliphilus metalliredigens QYMF putative small multi-drug export YP_001318170.1 315467 D 293826 CDS YP_001318171.1 150388122 5310323 316547..316711 1 NC_009633.1 hypothetical protein 316711 5310323 Amet_0280 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318171.1 316547 D 293826 CDS YP_001318172.1 150388123 5310324 317101..317580 1 NC_009633.1 hypothetical protein 317580 5310324 Amet_0281 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318172.1 317101 D 293826 CDS YP_001318173.1 150388124 5310325 317649..318815 1 NC_009633.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3360 hypothetical protein; RND family efflux transporter MFP subunit 318815 5310325 Amet_0282 Alkaliphilus metalliredigens QYMF RND family efflux transporter MFP subunit YP_001318173.1 317649 D 293826 CDS YP_001318174.1 150388125 5310326 318815..321895 1 NC_009633.1 PFAM: acriflavin resistance protein; KEGG: swo:Swol_1118 hypothetical protein; acriflavin resistance protein 321895 5310326 Amet_0283 Alkaliphilus metalliredigens QYMF acriflavin resistance protein YP_001318174.1 318815 D 293826 CDS YP_001318175.1 150388126 5310327 322249..322836 1 NC_009633.1 KEGG: cpf:CPF_0240 putative co-chaperone GrpE; hypothetical protein 322836 5310327 Amet_0284 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318175.1 322249 D 293826 CDS YP_001318176.1 150388127 5310328 322833..324542 1 NC_009633.1 PFAM: Heat shock protein 70; KEGG: cno:NT01CX_1453 DNAk protein; 2-alkenal reductase 324542 5310328 Amet_0285 Alkaliphilus metalliredigens QYMF 2-alkenal reductase YP_001318176.1 322833 D 293826 CDS YP_001318177.1 150388128 5310329 324542..325096 1 NC_009633.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cno:NT01CX_1454 conserved protein, putative; hypothetical protein 325096 5310329 Amet_0286 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318177.1 324542 D 293826 CDS YP_001318178.1 150388129 5310330 325122..326498 1 NC_009633.1 PFAM: TPR repeat-containing protein; heat shock protein DnaJ domain protein; SEC-C motif domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cno:NT01CX_1455 TPR domain protein; heat shock protein DnaJ domain-containing protein 326498 5310330 Amet_0287 Alkaliphilus metalliredigens QYMF heat shock protein DnaJ domain-containing protein YP_001318178.1 325122 D 293826 CDS YP_001318179.1 150388130 5310331 326809..327459 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC1506 response regulator (CheY-like receiver domain and a HTH); two component transcriptional regulator 327459 5310331 Amet_0288 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001318179.1 326809 D 293826 CDS YP_001318180.1 150388131 5310332 327463..328890 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: cac:CAC1507 sensory transduction histidine kinase (with HAMP domain); integral membrane sensor signal transduction histidine kinase 328890 5310332 Amet_0289 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001318180.1 327463 D 293826 CDS YP_001318181.1 150388132 5310333 328965..329195 1 NC_009633.1 KEGG: ptr:461291 splicing factor YT521-B; hypothetical protein 329195 5310333 Amet_0290 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318181.1 328965 D 293826 CDS YP_001318182.1 150388133 5310334 329302..331092 1 NC_009633.1 hypothetical protein 331092 5310334 Amet_0291 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318182.1 329302 D 293826 CDS YP_001318183.1 150388134 5310335 331125..331505 1 NC_009633.1 KEGG: ttj:TTHA0227 hypothetical protein; hypothetical protein 331505 5310335 Amet_0292 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318183.1 331125 D 293826 CDS YP_001318184.1 150388135 5310336 331742..333619 1 NC_009633.1 PFAM: S-layer domain protein; KEGG: swo:Swol_0317 hypothetical protein; S-layer protein 333619 5310336 Amet_0293 Alkaliphilus metalliredigens QYMF S-layer protein YP_001318184.1 331742 D 293826 CDS YP_001318185.1 150388136 5310337 334166..334720 1 NC_009633.1 KEGG: ctc:CTC01854 transcriptional regulator; TetR family transcriptional regulator 334720 5310337 Amet_0294 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001318185.1 334166 D 293826 CDS YP_001318186.1 150388137 5310338 334816..335745 1 NC_009633.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cno:NT01CX_1540 UTP-glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase 335745 5310338 Amet_0295 Alkaliphilus metalliredigens QYMF UTP-glucose-1-phosphate uridylyltransferase YP_001318186.1 334816 D 293826 CDS YP_001318187.1 150388138 5310339 335950..336792 1 NC_009633.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: bld:BLi03124 similar to flagellar motor apparatus; RBL03008; MotA/TolQ/ExbB proton channel 336792 5310339 Amet_0296 Alkaliphilus metalliredigens QYMF MotA/TolQ/ExbB proton channel YP_001318187.1 335950 D 293826 CDS YP_001318188.1 150388139 5310340 336767..337480 1 NC_009633.1 PFAM: OmpA/MotB domain protein; KEGG: bsu:BG10366 similar to motility protein; OmpA/MotB domain-containing protein 337480 5310340 Amet_0297 Alkaliphilus metalliredigens QYMF OmpA/MotB domain-containing protein YP_001318188.1 336767 D 293826 CDS YP_001318189.1 150388140 5310341 337706..338617 1 NC_009633.1 PFAM: S-layer domain protein; KEGG: cth:Cthe_2809 glycoside hydrolase, family 16; S-layer protein 338617 5310341 Amet_0298 Alkaliphilus metalliredigens QYMF S-layer protein YP_001318189.1 337706 D 293826 CDS YP_001318190.1 150388141 5310342 338697..339359 1 NC_009633.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_4945 TPR repeat; hypothetical protein 339359 5310342 Amet_0299 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318190.1 338697 D 293826 CDS YP_001318191.1 150388142 5310343 339512..339778 1 NC_009633.1 KEGG: cch:Cag_0270 hypothetical protein; hypothetical protein 339778 5310343 Amet_0300 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318191.1 339512 D 293826 CDS YP_001318192.1 150388143 5310344 339792..340037 1 NC_009633.1 KEGG: cch:Cag_0271 hypothetical protein; hypothetical protein 340037 5310344 Amet_0301 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318192.1 339792 D 293826 CDS YP_001318193.1 150388144 5310345 340273..341262 1 NC_009633.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: tte:TTE1927 UDP-glucose 4-epimerase; UDP-glucose 4-epimerase 341262 5310345 Amet_0302 Alkaliphilus metalliredigens QYMF UDP-glucose 4-epimerase YP_001318193.1 340273 D 293826 CDS YP_001318194.1 150388145 5310346 341368..342798 1 NC_009633.1 KEGG: mta:Moth_0665 hypothetical protein; hypothetical protein 342798 5310346 Amet_0303 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318194.1 341368 D 293826 CDS YP_001318195.1 150388146 5310347 complement(342808..344016) 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: sak:SAK_2050 IS10R, transposase; transposase, IS4 family protein 344016 5310347 Amet_0304 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001318195.1 342808 R 293826 CDS YP_001318196.1 150388147 5310349 344236..345126 1 NC_009633.1 PFAM: glycosyl transferase, family 2; KEGG: baa:BA_0542 glycosyl transferase; glycosyl transferase family protein 345126 5310349 Amet_0306 Alkaliphilus metalliredigens QYMF glycosyl transferase family protein YP_001318196.1 344236 D 293826 CDS YP_001318197.1 150388148 5310350 345154..345573 1 NC_009633.1 PFAM: GtrA family protein; KEGG: lmf:LMOf2365_2522 cell wall teichoic acid glycosylation protein GtcA; GtrA family protein 345573 5310350 Amet_0307 Alkaliphilus metalliredigens QYMF GtrA family protein YP_001318197.1 345154 D 293826 CDS YP_001318198.1 150388149 5310351 345761..346507 1 NC_009633.1 KEGG: cth:Cthe_0240 hypothetical protein; hypothetical protein 346507 5310351 Amet_0308 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318198.1 345761 D 293826 CDS YP_001318199.1 150388150 5310352 346519..347214 1 NC_009633.1 KEGG: cth:Cthe_0730 hypothetical protein; hypothetical protein 347214 5310352 Amet_0309 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318199.1 346519 D 293826 CDS YP_001318200.1 150388151 5310353 347310..349040 1 NC_009633.1 PFAM: Spore coat protein CotH; KEGG: bsu:BG11791 spore coat protein (inner); spore coat protein CotH 349040 5310353 Amet_0310 Alkaliphilus metalliredigens QYMF spore coat protein CotH YP_001318200.1 347310 D 293826 CDS YP_001318201.1 150388152 5310354 349102..350175 1 NC_009633.1 PFAM: acyltransferase 3; KEGG: mma:MM2212 hypothetical protein; acyltransferase 3 350175 5310354 Amet_0311 Alkaliphilus metalliredigens QYMF acyltransferase 3 YP_001318201.1 349102 D 293826 CDS YP_001318202.1 150388153 5310355 350536..351690 1 NC_009633.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3360 hypothetical protein; RND family efflux transporter MFP subunit 351690 5310355 Amet_0312 Alkaliphilus metalliredigens QYMF RND family efflux transporter MFP subunit YP_001318202.1 350536 D 293826 CDS YP_001318203.1 150388154 5310357 353145..353717 1 NC_009633.1 PFAM: regulatory protein, TetR; KEGG: dsy:DSY3361 hypothetical protein; TetR family transcriptional regulator 353717 5310357 Amet_0314 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001318203.1 353145 D 293826 CDS YP_001318204.1 150388155 5310358 complement(353786..355141) 1 NC_009633.1 PFAM: sodium:neurotransmitter symporter; KEGG: cvi:CV1670 probable sodium/chloride ion channel; sodium:neurotransmitter symporter 355141 5310358 Amet_0315 Alkaliphilus metalliredigens QYMF sodium:neurotransmitter symporter YP_001318204.1 353786 R 293826 CDS YP_001318205.1 150388156 5310359 355486..355848 1 NC_009633.1 PFAM: response regulator receiver; KEGG: dsy:DSY4941 hypothetical protein; response regulator receiver protein 355848 5310359 Amet_0316 Alkaliphilus metalliredigens QYMF response regulator receiver protein YP_001318205.1 355486 D 293826 CDS YP_001318206.1 150388157 5310360 355968..356357 1 NC_009633.1 KEGG: tte:TTE0718 acyl-CoA hydrolase; acyl-CoA hydrolase 356357 5310360 Amet_0317 Alkaliphilus metalliredigens QYMF acyl-CoA hydrolase YP_001318206.1 355968 D 293826 CDS YP_001318207.1 150388158 5310361 356371..357183 1 NC_009633.1 PFAM: protein of unknown function DUF849; KEGG: rfr:Rfer_3885 protein of unknown function DUF849; hypothetical protein 357183 5310361 Amet_0318 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318207.1 356371 D 293826 CDS YP_001318208.1 150388159 5310362 357195..357839 1 NC_009633.1 TIGRFAM: putative transaldolase; PFAM: Transaldolase; KEGG: bce:BC0665 transaldolase; putative transaldolase 357839 5310362 Amet_0319 Alkaliphilus metalliredigens QYMF putative transaldolase YP_001318208.1 357195 D 293826 CDS YP_001318209.1 150388160 5310363 357933..358751 1 NC_009633.1 PFAM: alpha/beta hydrolase fold; KEGG: tte:TTE0552 predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily); alpha/beta hydrolase fold protein 358751 5310363 Amet_0320 Alkaliphilus metalliredigens QYMF alpha/beta hydrolase fold protein YP_001318209.1 357933 D 293826 CDS YP_001318210.1 150388161 5310364 359244..360242 1 NC_009633.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 360242 glpX 5310364 glpX Alkaliphilus metalliredigens QYMF fructose 1,6-bisphosphatase II YP_001318210.1 359244 D 293826 CDS YP_001318211.1 150388162 5310365 360274..361242 1 NC_009633.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 361242 glpX 5310365 glpX Alkaliphilus metalliredigens QYMF fructose 1,6-bisphosphatase II YP_001318211.1 360274 D 293826 CDS YP_001318212.1 150388163 5310366 361368..362801 1 NC_009633.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 362801 rho 5310366 rho Alkaliphilus metalliredigens QYMF transcription termination factor Rho YP_001318212.1 361368 D 293826 CDS YP_001318213.1 150388164 5310367 362910..363107 1 NC_009633.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 363107 rpmE 5310367 rpmE Alkaliphilus metalliredigens QYMF 50S ribosomal protein L31 YP_001318213.1 362910 D 293826 CDS YP_001318214.1 150388165 5310368 363205..363792 1 NC_009633.1 PFAM: thymidine kinase; KEGG: tte:TTE0140 Thymidine kinase; thymidine kinase 363792 5310368 Amet_0325 Alkaliphilus metalliredigens QYMF thymidine kinase YP_001318214.1 363205 D 293826 CDS YP_001318215.1 150388166 5310369 364403..365224 1 NC_009633.1 PFAM: regulatory protein, MerR; KEGG: pca:Pcar_2183 predicted transcriptional regulator; MerR family transcriptional regulator 365224 5310369 Amet_0326 Alkaliphilus metalliredigens QYMF MerR family transcriptional regulator YP_001318215.1 364403 D 293826 CDS YP_001318216.1 150388167 5310370 365325..367259 1 NC_009633.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ser:SERP2381 NADH:flavin oxidoreductase/fumarate reductase, flavoprotein subunit, putative; flavocytochrome c 367259 5310370 Amet_0327 Alkaliphilus metalliredigens QYMF flavocytochrome c YP_001318216.1 365325 D 293826 CDS YP_001318217.1 150388168 5310371 367824..368051 1 NC_009633.1 hypothetical protein 368051 5310371 Amet_0328 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318217.1 367824 D 293826 CDS YP_001318218.1 150388169 5310372 368239..369639 1 NC_009633.1 hypothetical protein 369639 5310372 Amet_0329 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318218.1 368239 D 293826 CDS YP_001318219.1 150388170 5310373 369672..370553 1 NC_009633.1 TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: cth:Cthe_2428 modification methylase, HemK family; HemK family modification methylase 370553 5310373 Amet_0330 Alkaliphilus metalliredigens QYMF HemK family modification methylase YP_001318219.1 369672 D 293826 CDS YP_001318220.1 150388171 5310374 370654..371727 1 NC_009633.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 371727 prfA 5310374 prfA Alkaliphilus metalliredigens QYMF peptide chain release factor 1 YP_001318220.1 370654 D 293826 CDS YP_001318221.1 150388172 5310375 371953..372618 1 NC_009633.1 PFAM: zinc/iron permease; KEGG: tte:TTE0144 predicted divalent heavy-metal cations transporter; zinc/iron permease 372618 5310375 Amet_0332 Alkaliphilus metalliredigens QYMF zinc/iron permease YP_001318221.1 371953 D 293826 CDS YP_001318222.1 150388173 5310376 372719..373171 1 NC_009633.1 PFAM: Forkhead-associated protein; KEGG: cth:Cthe_3045 FHA domain containing protein; FHA domain-containing protein 373171 5310376 Amet_0333 Alkaliphilus metalliredigens QYMF FHA domain-containing protein YP_001318222.1 372719 D 293826 CDS YP_001318223.1 150388174 5310377 373176..374390 1 NC_009633.1 PFAM: cell cycle protein; KEGG: cth:Cthe_3046 cell cycle protein; cell cycle protein 374390 5310377 Amet_0334 Alkaliphilus metalliredigens QYMF cell cycle protein YP_001318223.1 373176 D 293826 CDS YP_001318224.1 150388175 5310378 374377..375777 1 NC_009633.1 PFAM: penicillin-binding protein, transpeptidase; KEGG: cth:Cthe_3047 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 375777 5310378 Amet_0335 Alkaliphilus metalliredigens QYMF peptidoglycan glycosyltransferase YP_001318224.1 374377 D 293826 CDS YP_001318225.1 150388176 5310379 375780..376850 1 NC_009633.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; KEGG: tte:TTE0145 putative translation factor (SUA5); Sua5/YciO/YrdC/YwlC family protein 376850 5310379 Amet_0336 Alkaliphilus metalliredigens QYMF Sua5/YciO/YrdC/YwlC family protein YP_001318225.1 375780 D 293826 CDS YP_001318226.1 150388177 5310380 376869..377348 1 NC_009633.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: chy:CHY_2559 low molecular weight protein-tyrosine-phosphatase; protein tyrosine phosphatase 377348 5310380 Amet_0337 Alkaliphilus metalliredigens QYMF protein tyrosine phosphatase YP_001318226.1 376869 D 293826 CDS YP_001318227.1 150388178 5310381 377459..377908 1 NC_009633.1 TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: cpr:CPR_2173 ribose 5-phosphate isomerase B; RpiB/LacA/LacB family sugar-phosphate isomerase 377908 5310381 Amet_0338 Alkaliphilus metalliredigens QYMF RpiB/LacA/LacB family sugar-phosphate isomerase YP_001318227.1 377459 D 293826 CDS YP_001318228.1 150388179 5310382 377924..378553 1 NC_009633.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 378553 upp 5310382 upp Alkaliphilus metalliredigens QYMF uracil phosphoribosyltransferase YP_001318228.1 377924 D 293826 CDS YP_001318229.1 150388180 5310383 378757..379197 1 NC_009633.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: cth:Cthe_2599 CMP/dCMP deaminase, zinc-binding; CMP/dCMP deaminase 379197 5310383 Amet_0340 Alkaliphilus metalliredigens QYMF CMP/dCMP deaminase YP_001318229.1 378757 D 293826 CDS YP_001318230.1 150388181 5310384 379281..380321 1 NC_009633.1 PFAM: glycosyl transferase, family 4; KEGG: tte:TTE0154 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; glycosyl transferase family protein 380321 5310384 Amet_0341 Alkaliphilus metalliredigens QYMF glycosyl transferase family protein YP_001318230.1 379281 D 293826 CDS YP_001318231.1 150388182 5310385 complement(380538..381953) 1 NC_009633.1 PFAM: sodium:neurotransmitter symporter; KEGG: vfi:VF1605 putative neurotransmitter:Na+ symporter, NSS family; sodium:neurotransmitter symporter 381953 5310385 Amet_0342 Alkaliphilus metalliredigens QYMF sodium:neurotransmitter symporter YP_001318231.1 380538 R 293826 CDS YP_001318232.1 150388183 5310386 382412..383545 1 NC_009633.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: ctc:CTC00311 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 383545 5310386 Amet_0343 Alkaliphilus metalliredigens QYMF UDP-N-acetylglucosamine 2-epimerase YP_001318232.1 382412 D 293826 CDS YP_001318233.1 150388184 5310387 383912..384139 1 NC_009633.1 KEGG: gme:Gmet_3357 hypothetical protein; hypothetical protein 384139 5310387 Amet_0344 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318233.1 383912 D 293826 CDS YP_001318234.1 150388185 5310388 384144..384590 1 NC_009633.1 KEGG: gsu:GSU0335 hypothetical protein; hypothetical protein 384590 5310388 Amet_0345 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318234.1 384144 D 293826 CDS YP_001318235.1 150388186 5310389 384556..385254 1 NC_009633.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+-transporting two-sector ATPase, A subunit; KEGG: cpf:CPF_2458 ATP synthase F0, A subunit; ATP synthase F0 subunit A 385254 5310389 Amet_0346 Alkaliphilus metalliredigens QYMF ATP synthase F0 subunit A YP_001318235.1 384556 D 293826 CDS YP_001318236.1 150388187 5310390 385338..385892 1 NC_009633.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+-transporting two-sector ATPase, C subunit; KEGG: fnu:FN0363 ATP synthase C chain, sodium ion specific; ATP synthase F0 subunit C 385892 5310390 Amet_0347 Alkaliphilus metalliredigens QYMF ATP synthase F0 subunit C YP_001318236.1 385338 D 293826 CDS YP_001318237.1 150388188 5310391 385990..386256 1 NC_009633.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 386256 5310391 Amet_0348 Alkaliphilus metalliredigens QYMF F0F1 ATP synthase subunit C YP_001318237.1 385990 D 293826 CDS YP_001318238.1 150388189 5310392 386324..386830 1 NC_009633.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: tte:TTE0633 F0F1-type ATP synthase b subunit; ATP synthase F0 subunit B 386830 5310392 Amet_0349 Alkaliphilus metalliredigens QYMF ATP synthase F0 subunit B YP_001318238.1 386324 D 293826 CDS YP_001318239.1 150388190 5310393 386818..387360 1 NC_009633.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: dsy:DSY4915 ATP synthase F1 delta subunit; ATP synthase F1 subunit delta 387360 5310393 Amet_0350 Alkaliphilus metalliredigens QYMF ATP synthase F1 subunit delta YP_001318239.1 386818 D 293826 CDS YP_001318240.1 150388191 5310394 387378..388895 1 NC_009633.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 388895 5310394 Amet_0351 Alkaliphilus metalliredigens QYMF F0F1 ATP synthase subunit alpha YP_001318240.1 387378 D 293826 CDS YP_001318241.1 150388192 5310395 388933..389802 1 NC_009633.1 TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+-transporting two-sector ATPase, gamma subunit; KEGG: chy:CHY_2546 ATP synthase F1, gamma subunit; ATP synthase F1 subunit gamma 389802 5310395 Amet_0352 Alkaliphilus metalliredigens QYMF ATP synthase F1 subunit gamma YP_001318241.1 388933 D 293826 CDS YP_001318242.1 150388193 5310396 389821..391215 1 NC_009633.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 391215 5310396 Amet_0353 Alkaliphilus metalliredigens QYMF F0F1 ATP synthase subunit beta YP_001318242.1 389821 D 293826 CDS YP_001318243.1 150388194 5310397 391225..391629 1 NC_009633.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+-transporting two-sector ATPase, delta/epsilon subunit; KEGG: tte:TTE0638 F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit); ATP synthase F1 subunit epsilon 391629 5310397 Amet_0354 Alkaliphilus metalliredigens QYMF ATP synthase F1 subunit epsilon YP_001318243.1 391225 D 293826 CDS YP_001318244.1 150388195 5310398 complement(391786..392205) 1 NC_009633.1 KEGG: dsy:DSY0901 hypothetical protein; hypothetical protein 392205 5310398 Amet_0355 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318244.1 391786 R 293826 CDS YP_001318245.1 150388196 5310399 392531..393082 1 NC_009633.1 PFAM: protein of unknown function DUF1694; KEGG: dsy:DSY3042 hypothetical protein; hypothetical protein 393082 5310399 Amet_0356 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318245.1 392531 D 293826 CDS YP_001318246.1 150388197 5310400 393304..394143 1 NC_009633.1 KEGG: tte:TTE0157 hypothetical protein; hypothetical protein 394143 5310400 Amet_0357 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318246.1 393304 D 293826 CDS YP_001318247.1 150388198 5310401 394175..395428 1 NC_009633.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 395428 5310401 Amet_0358 Alkaliphilus metalliredigens QYMF UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001318247.1 394175 D 293826 CDS YP_001318248.1 150388199 5310402 395535..396539 1 NC_009633.1 TIGRFAM: SpoIID/LytB domain protein; Sporulation stage II, protein D firmicutes; PFAM: Stage II sporulation D domain protein; KEGG: cth:Cthe_2616 SpoIID/LytB domain protein containing protein; sporulation stage II protein D 396539 5310402 Amet_0359 Alkaliphilus metalliredigens QYMF sporulation stage II protein D YP_001318248.1 395535 D 293826 CDS YP_001318249.1 150388200 5310403 396661..397545 1 NC_009633.1 PFAM: peptidase M23B; KEGG: cth:Cthe_2617 peptidase M23B; peptidase M23B 397545 5310403 Amet_0360 Alkaliphilus metalliredigens QYMF peptidase M23B YP_001318249.1 396661 D 293826 CDS YP_001318250.1 150388201 5310404 397788..398372 1 NC_009633.1 PFAM: regulatory protein, TetR; KEGG: son:SO3684 transcriptional regulator, TetR family; TetR family transcriptional regulator 398372 5310404 Amet_0361 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001318250.1 397788 D 293826 CDS YP_001318251.1 150388202 5310405 398445..399605 1 NC_009633.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3360 hypothetical protein; RND family efflux transporter MFP subunit 399605 5310405 Amet_0362 Alkaliphilus metalliredigens QYMF RND family efflux transporter MFP subunit YP_001318251.1 398445 D 293826 CDS YP_001318252.1 150388203 5310406 399602..402673 1 NC_009633.1 PFAM: acriflavin resistance protein; KEGG: swo:Swol_1118 hypothetical protein; acriflavin resistance protein 402673 5310406 Amet_0363 Alkaliphilus metalliredigens QYMF acriflavin resistance protein YP_001318252.1 399602 D 293826 CDS YP_001318253.1 150388204 5310407 402814..403077 1 NC_009633.1 TIGRFAM: Sporulation stage III, transcriptional regulator SpoIIID; KEGG: cno:NT01CX_0524 stage III sporulation protein D; sporulation stage III, transcriptional regulator SpoIIID 403077 5310407 Amet_0364 Alkaliphilus metalliredigens QYMF sporulation stage III, transcriptional regulator SpoIIID YP_001318253.1 402814 D 293826 CDS YP_001318254.1 150388205 5310408 403426..404451 1 NC_009633.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; KEGG: cth:Cthe_2619 cell shape determining protein, MreB/Mrl family; rod shape-determining protein Mbl 404451 5310408 Amet_0365 Alkaliphilus metalliredigens QYMF rod shape-determining protein Mbl YP_001318254.1 403426 D 293826 CDS YP_001318255.1 150388206 5310409 404654..405361 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_0941 ATP binding protein of ABC transporter; ABC transporter-like protein 405361 5310409 Amet_0366 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001318255.1 404654 D 293826 CDS YP_001318256.1 150388207 5310410 405365..407389 1 NC_009633.1 KEGG: cth:Cthe_3171 S-layer domain-like protein; S-layer protein 407389 5310410 Amet_0367 Alkaliphilus metalliredigens QYMF S-layer protein YP_001318256.1 405365 D 293826 CDS YP_001318257.1 150388208 5310411 407382..408731 1 NC_009633.1 PFAM: protein of unknown function DUF214; KEGG: swo:Swol_0943 ABC transporter component-like protein; hypothetical protein 408731 5310411 Amet_0368 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318257.1 407382 D 293826 CDS YP_001318258.1 150388209 5310412 408878..409969 1 NC_009633.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: tte:TTE0172 Flagellar basal body and hook proteins; flagellar basal body rod protein 409969 5310412 Amet_0369 Alkaliphilus metalliredigens QYMF flagellar basal body rod protein YP_001318258.1 408878 D 293826 CDS YP_001318259.1 150388210 5310413 410019..410813 1 NC_009633.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: tte:TTE0173 Flagellar basal body and hook proteins; hypothetical protein 410813 5310413 Amet_0370 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318259.1 410019 D 293826 CDS YP_001318260.1 150388211 5310414 410844..411215 1 NC_009633.1 KEGG: dps:DP2685 similar to flagellar muramidase protein (FlgJ); rod binding protein-like protein 411215 5310414 Amet_0371 Alkaliphilus metalliredigens QYMF rod binding protein-like protein YP_001318260.1 410844 D 293826 CDS YP_001318261.1 150388212 5310415 411234..411677 1 NC_009633.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 411677 fabZ 5310415 fabZ Alkaliphilus metalliredigens QYMF (3R)-hydroxymyristoyl-ACP dehydratase YP_001318261.1 411234 D 293826 CDS YP_001318262.1 150388213 5310416 411885..412724 1 NC_009633.1 PFAM: protein of unknown function DUF1568; KEGG: swo:Swol_0164 transposase and inactivated derivatives-like protein; hypothetical protein 412724 5310416 Amet_0373 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318262.1 411885 D 293826 CDS YP_001318263.1 150388214 5310417 412896..413783 1 NC_009633.1 PFAM: protein of unknown function DUF368; KEGG: oih:OB0592 hypothetical protein; hypothetical protein 413783 5310417 Amet_0374 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318263.1 412896 D 293826 CDS YP_001318264.1 150388215 5310418 413899..414822 1 NC_009633.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cpr:CPR_0469 UTP-glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase 414822 5310418 Amet_0375 Alkaliphilus metalliredigens QYMF UTP-glucose-1-phosphate uridylyltransferase YP_001318264.1 413899 D 293826 CDS YP_001318265.1 150388216 5310420 415537..415785 1 NC_009633.1 TIGRFAM: prevent-host-death family protein; KEGG: chy:CHY_2512 prevent-host-death family protein; prevent-host-death family protein 415785 5310420 Amet_0377 Alkaliphilus metalliredigens QYMF prevent-host-death family protein YP_001318265.1 415537 D 293826 CDS YP_001318266.1 150388217 5310421 415790..416116 1 NC_009633.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: dsy:DSY2129 hypothetical protein; addiction module antitoxin 416116 5310421 Amet_0378 Alkaliphilus metalliredigens QYMF addiction module antitoxin YP_001318266.1 415790 D 293826 CDS YP_001318267.1 150388218 5310422 416849..417502 1 NC_009633.1 hypothetical protein 417502 5310422 Amet_0379 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318267.1 416849 D 293826 CDS YP_001318268.1 150388219 5310423 417588..417758 1 NC_009633.1 hypothetical protein 417758 5310423 Amet_0380 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318268.1 417588 D 293826 CDS YP_001318269.1 150388220 5310424 417816..418511 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: cac:CAC2546 transcriptional regulator, FadR family; GntR family transcriptional regulator 418511 5310424 Amet_0381 Alkaliphilus metalliredigens QYMF GntR family transcriptional regulator YP_001318269.1 417816 D 293826 CDS YP_001318270.1 150388221 5310426 complement(419542..420306) 1 NC_009633.1 PFAM: helix-turn-helix domain protein; bacteriophage CI repressor; KEGG: ecv:APECO1_376 putative repressor protein encoded within prophage CP-933O; XRE family plasmid maintenance system antidote protein 420306 5310426 Amet_0383 Alkaliphilus metalliredigens QYMF XRE family plasmid maintenance system antidote protein YP_001318270.1 419542 R 293826 CDS YP_001318271.1 150388222 5310427 420608..420793 1 NC_009633.1 hypothetical protein 420793 5310427 Amet_0384 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318271.1 420608 D 293826 CDS YP_001318272.1 150388223 5310428 421139..421345 1 NC_009633.1 hypothetical protein 421345 5310428 Amet_0385 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318272.1 421139 D 293826 CDS YP_001318273.1 150388224 5310429 421320..421790 1 NC_009633.1 hypothetical protein 421790 5310429 Amet_0386 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318273.1 421320 D 293826 CDS YP_001318274.1 150388225 5310430 421815..422039 1 NC_009633.1 KEGG: tte:TTE2173 hypothetical protein; hypothetical protein 422039 5310430 Amet_0387 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318274.1 421815 D 293826 CDS YP_001318275.1 150388226 5310431 422198..424255 1 NC_009633.1 PFAM: Transposase-like, Mu-like; KEGG: bcz:pE33L466_0072 transposase; transposase 424255 5310431 Amet_0388 Alkaliphilus metalliredigens QYMF transposase YP_001318275.1 422198 D 293826 CDS YP_001318276.1 150388227 5310432 424271..425194 1 NC_009633.1 KEGG: cjr:CJE0269 bacteriophage DNA transposition protein B, putative; hypothetical protein 425194 5310432 Amet_0389 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318276.1 424271 D 293826 CDS YP_001318277.1 150388228 5310433 425194..425448 1 NC_009633.1 hypothetical protein 425448 5310433 Amet_0390 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318277.1 425194 D 293826 CDS YP_001318278.1 150388229 5310434 425450..425677 1 NC_009633.1 hypothetical protein 425677 5310434 Amet_0391 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318278.1 425450 D 293826 CDS YP_001318279.1 150388230 5310435 425655..426410 1 NC_009633.1 hypothetical protein 426410 5310435 Amet_0392 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318279.1 425655 D 293826 CDS YP_001318280.1 150388231 5310436 426394..426651 1 NC_009633.1 PFAM: SpoVT/AbrB domain protein; KEGG: swo:Swol_0047 transcription regulator AbrB; transcriptional regulator/antitoxin MazE 426651 5310436 Amet_0393 Alkaliphilus metalliredigens QYMF transcriptional regulator/antitoxin MazE YP_001318280.1 426394 D 293826 CDS YP_001318281.1 150388232 5310437 426644..427297 1 NC_009633.1 hypothetical protein 427297 5310437 Amet_0394 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318281.1 426644 D 293826 CDS YP_001318282.1 150388233 5310438 427347..427775 1 NC_009633.1 hypothetical protein 427775 5310438 Amet_0395 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318282.1 427347 D 293826 CDS YP_001318283.1 150388234 5310439 427768..427992 1 NC_009633.1 hypothetical protein 427992 5310439 Amet_0396 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318283.1 427768 D 293826 CDS YP_001318284.1 150388235 5310440 428063..428224 1 NC_009633.1 hypothetical protein 428224 5310440 Amet_0397 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318284.1 428063 D 293826 CDS YP_001318285.1 150388236 5310441 428229..428885 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; KEGG: cpr:CPR_1733 RNA polymerase sigma-E factor; FliA/WhiG family RNA polymerase sigma factor 428885 5310441 Amet_0398 Alkaliphilus metalliredigens QYMF FliA/WhiG family RNA polymerase sigma factor YP_001318285.1 428229 D 293826 CDS YP_001318286.1 150388237 5310442 428892..429293 1 NC_009633.1 KEGG: pol:Bpro_3769 hypothetical protein; hypothetical protein 429293 5310442 Amet_0399 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318286.1 428892 D 293826 CDS YP_001318287.1 150388238 5310443 429587..429898 1 NC_009633.1 hypothetical protein 429898 5310443 Amet_0400 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318287.1 429587 D 293826 CDS YP_001318288.1 150388239 5310444 429942..430280 1 NC_009633.1 hypothetical protein 430280 5310444 Amet_0401 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318288.1 429942 D 293826 CDS YP_001318289.1 150388240 5310445 430311..430532 1 NC_009633.1 hypothetical protein 430532 5310445 Amet_0402 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318289.1 430311 D 293826 CDS YP_001318290.1 150388241 5310446 430558..430683 1 NC_009633.1 hypothetical protein 430683 5310446 Amet_0403 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318290.1 430558 D 293826 CDS YP_001318291.1 150388242 5310447 430684..430920 1 NC_009633.1 hypothetical protein 430920 5310447 Amet_0404 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318291.1 430684 D 293826 CDS YP_001318292.1 150388243 5310448 430939..431118 1 NC_009633.1 hypothetical protein 431118 5310448 Amet_0405 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318292.1 430939 D 293826 CDS YP_001318293.1 150388244 5310449 431161..431637 1 NC_009633.1 PFAM: 3D domain protein; KEGG: bsu:BG13521 similar to cell wall-binding protein; hypothetical protein 431637 5310449 Amet_0406 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318293.1 431161 D 293826 CDS YP_001318294.1 150388245 5310450 431667..432377 1 NC_009633.1 KEGG: ssa:SSA_0424 exopolysaccharide biosynthesis protein, putative; related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like protein; exopolysaccharide biosynthesis protein 432377 5310450 Amet_0407 Alkaliphilus metalliredigens QYMF exopolysaccharide biosynthesis protein YP_001318294.1 431667 D 293826 CDS YP_001318295.1 150388246 5310451 432497..433174 1 NC_009633.1 PFAM: cell wall hydrolase/autolysin; KEGG: bld:BLi01974 N-acetylmuramoyl-L-alanine amidase cwlL precursor (Cell wall hydrolase) (Autolysin); RBL04154; cell wall hydrolase/autolysin 433174 5310451 Amet_0408 Alkaliphilus metalliredigens QYMF cell wall hydrolase/autolysin YP_001318295.1 432497 D 293826 CDS YP_001318296.1 150388247 5310452 433228..433542 1 NC_009633.1 hypothetical protein 433542 5310452 Amet_0409 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318296.1 433228 D 293826 CDS YP_001318297.1 150388248 5310453 433653..434192 1 NC_009633.1 hypothetical protein 434192 5310453 Amet_0410 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318297.1 433653 D 293826 CDS YP_001318298.1 150388249 5310454 434194..434487 1 NC_009633.1 hypothetical protein 434487 5310454 Amet_0411 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318298.1 434194 D 293826 CDS YP_001318299.1 150388250 5310455 434489..434782 1 NC_009633.1 hypothetical protein 434782 5310455 Amet_0412 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318299.1 434489 D 293826 CDS YP_001318300.1 150388251 5310456 434782..435348 1 NC_009633.1 KEGG: mfa:Mfla_2702 hypothetical protein; hypothetical protein 435348 5310456 Amet_0413 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318300.1 434782 D 293826 CDS YP_001318301.1 150388252 5310457 435362..435850 1 NC_009633.1 PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; KEGG: tte:TTE0730 Transcription antiterminator; NusG antitermination factor 435850 5310457 Amet_0414 Alkaliphilus metalliredigens QYMF NusG antitermination factor YP_001318301.1 435362 D 293826 CDS YP_001318302.1 150388253 5310458 436107..437564 1 NC_009633.1 TIGRFAM: phage uncharacterized protein; KEGG: bha:BH3533 hypothetical protein; phage protein 437564 5310458 Amet_0415 Alkaliphilus metalliredigens QYMF phage protein YP_001318302.1 436107 D 293826 CDS YP_001318303.1 150388254 5310459 437582..438931 1 NC_009633.1 TIGRFAM: phage-associated protein, HI1409 family; KEGG: efa:EF1456 conserved hypothetical protein TIGR01555; phage-associated protein 438931 5310459 Amet_0416 Alkaliphilus metalliredigens QYMF phage-associated protein YP_001318303.1 437582 D 293826 CDS YP_001318304.1 150388255 5310460 438924..439706 1 NC_009633.1 TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family; PFAM: phage putative head morphogenesis protein, SPP1 gp7; KEGG: efa:EF1457 minor head protein; SPP1 family phage head morphogenesis protein 439706 5310460 Amet_0417 Alkaliphilus metalliredigens QYMF SPP1 family phage head morphogenesis protein YP_001318304.1 438924 D 293826 CDS YP_001318305.1 150388256 5310461 439720..440823 1 NC_009633.1 KEGG: lin:lin1728 hypothetical protein; hypothetical protein 440823 5310461 Amet_0418 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318305.1 439720 D 293826 CDS YP_001318306.1 150388257 5310462 440839..441339 1 NC_009633.1 KEGG: efa:EF1462 hypothetical protein; hypothetical protein 441339 5310462 Amet_0419 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318306.1 440839 D 293826 CDS YP_001318307.1 150388258 5310463 441362..442276 1 NC_009633.1 KEGG: lin:lin1726 hypothetical protein; hypothetical protein 442276 5310463 Amet_0420 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318307.1 441362 D 293826 CDS YP_001318308.1 150388259 5310464 442292..442624 1 NC_009633.1 hypothetical protein 442624 5310464 Amet_0421 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318308.1 442292 D 293826 CDS YP_001318309.1 150388260 5310465 442627..442959 1 NC_009633.1 KEGG: lin:lin1724 hypothetical protein; hypothetical protein 442959 5310465 Amet_0422 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318309.1 442627 D 293826 CDS YP_001318310.1 150388261 5310466 442972..443574 1 NC_009633.1 KEGG: lin:lin1723 hypothetical protein; hypothetical protein 443574 5310466 Amet_0423 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318310.1 442972 D 293826 CDS YP_001318311.1 150388262 5310467 443571..443933 1 NC_009633.1 hypothetical protein 443933 5310467 Amet_0424 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318311.1 443571 D 293826 CDS YP_001318312.1 150388263 5310468 443930..444436 1 NC_009633.1 hypothetical protein 444436 5310468 Amet_0425 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318312.1 443930 D 293826 CDS YP_001318313.1 150388264 5310469 444448..445452 1 NC_009633.1 KEGG: efa:EF1469 hypothetical protein; hypothetical protein 445452 5310469 Amet_0426 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318313.1 444448 D 293826 CDS YP_001318314.1 150388265 5310470 445464..445868 1 NC_009633.1 KEGG: hit:NTHI1539 hypothetical protein; hypothetical protein 445868 5310470 Amet_0427 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318314.1 445464 D 293826 CDS YP_001318315.1 150388266 5310471 445924..446178 1 NC_009633.1 hypothetical protein 446178 5310471 Amet_0428 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318315.1 445924 D 293826 CDS YP_001318316.1 150388267 5310472 446239..446562 1 NC_009633.1 hypothetical protein 446562 5310472 Amet_0429 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318316.1 446239 D 293826 CDS YP_001318317.1 150388268 5310473 446671..448428 1 NC_009633.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: bld:BLi01480 hypothetical protein; TP901 family phage tail tape measure protein 448428 5310473 Amet_0430 Alkaliphilus metalliredigens QYMF TP901 family phage tail tape measure protein YP_001318317.1 446671 D 293826 CDS YP_001318318.1 150388269 5310474 448441..449031 1 NC_009633.1 KEGG: lin:lin1715 hypothetical protein; hypothetical protein 449031 5310474 Amet_0431 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318318.1 448441 D 293826 CDS YP_001318319.1 150388270 5310475 449028..449357 1 NC_009633.1 KEGG: efa:EF1475 hypothetical protein; hypothetical protein 449357 5310475 Amet_0432 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318319.1 449028 D 293826 CDS YP_001318320.1 150388271 5310476 449344..450120 1 NC_009633.1 KEGG: lin:lin1713 hypothetical protein; hypothetical protein 450120 5310476 Amet_0433 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318320.1 449344 D 293826 CDS YP_001318321.1 150388272 5310477 450117..450413 1 NC_009633.1 hypothetical protein 450413 5310477 Amet_0434 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318321.1 450117 D 293826 CDS YP_001318322.1 150388273 5310478 450413..450775 1 NC_009633.1 KEGG: efa:EF1478 hypothetical protein; hypothetical protein 450775 5310478 Amet_0435 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318322.1 450413 D 293826 CDS YP_001318323.1 150388274 5310479 450768..451955 1 NC_009633.1 KEGG: efa:EF1479 hypothetical protein; hypothetical protein 451955 5310479 Amet_0436 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318323.1 450768 D 293826 CDS YP_001318324.1 150388275 5310480 451948..452577 1 NC_009633.1 KEGG: lin:lin1709 hypothetical protein; hypothetical protein 452577 5310480 Amet_0437 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318324.1 451948 D 293826 CDS YP_001318325.1 150388276 5310481 452588..453157 1 NC_009633.1 KEGG: lin:lin1708 hypothetical protein; hypothetical protein 453157 5310481 Amet_0438 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318325.1 452588 D 293826 CDS YP_001318326.1 150388277 5310482 453159..453407 1 NC_009633.1 hypothetical protein 453407 5310482 Amet_0439 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318326.1 453159 D 293826 CDS YP_001318327.1 150388278 5310483 453400..453534 1 NC_009633.1 hypothetical protein 453534 5310483 Amet_0440 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318327.1 453400 D 293826 CDS YP_001318328.1 150388279 5310484 join(453984..454529,454531..454983) 1 NC_009633.1 PFAM: phage integrase domain protein SAM domain protein; KEGG: dsy:DSY2171 hypothetical protein; phage integrase domain/SAM domain-containing protein 454983 5310484 Amet_0441 Alkaliphilus metalliredigens QYMF phage integrase domain/SAM domain-containing protein YP_001318328.1 453984 D 293826 CDS YP_001318329.1 150388280 5310485 455152..455811 1 NC_009633.1 PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; KEGG: ctc:CTC02083 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit alpha/beta-like protein 455811 5310485 Amet_0442 Alkaliphilus metalliredigens QYMF electron transfer flavoprotein subunit alpha/beta-like protein YP_001318329.1 455152 D 293826 CDS YP_001318330.1 150388281 5310486 455820..456809 1 NC_009633.1 PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; KEGG: tte:TTE0547 Electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein subunit alpha-like protein 456809 5310486 Amet_0443 Alkaliphilus metalliredigens QYMF electron transfer flavoprotein subunit alpha-like protein YP_001318330.1 455820 D 293826 CDS YP_001318331.1 150388282 5310487 456935..458086 1 NC_009633.1 KEGG: pho:PH0137 hypothetical protein; hypothetical protein 458086 5310487 Amet_0444 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318331.1 456935 D 293826 CDS YP_001318332.1 150388283 5310488 458180..459562 1 NC_009633.1 PFAM: FAD linked oxidase domain protein; KEGG: afu:AF0394 D-lactate dehydrogenase, cytochrome-type (dld); FAD linked oxidase domain-containing protein 459562 5310488 Amet_0445 Alkaliphilus metalliredigens QYMF FAD linked oxidase domain-containing protein YP_001318332.1 458180 D 293826 CDS YP_001318333.1 150388284 5310489 460101..460343 1 NC_009633.1 hypothetical protein 460343 5310489 Amet_0446 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318333.1 460101 D 293826 CDS YP_001318334.1 150388285 5310490 460346..460570 1 NC_009633.1 hypothetical protein 460570 5310490 Amet_0447 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318334.1 460346 D 293826 CDS YP_001318335.1 150388286 5310491 460571..460687 1 NC_009633.1 hypothetical protein 460687 5310491 Amet_0448 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318335.1 460571 D 293826 CDS YP_001318336.1 150388287 5310492 460892..462766 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase; transposase, IS4 family protein 462766 5310492 Amet_0449 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001318336.1 460892 D 293826 CDS YP_001318337.1 150388288 5310493 462812..462949 1 NC_009633.1 hypothetical protein 462949 5310493 Amet_0450 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318337.1 462812 D 293826 CDS YP_001318338.1 150388289 5310494 463002..463400 1 NC_009633.1 KEGG: cth:Cthe_2665 Zn-finger containing protein; Zn-finger containing protein 463400 5310494 Amet_0451 Alkaliphilus metalliredigens QYMF Zn-finger containing protein YP_001318338.1 463002 D 293826 CDS YP_001318339.1 150388290 5310495 463450..464220 1 NC_009633.1 PFAM: heat shock protein DnaJ domain protein; KEGG: gka:GK2503 chaperone protein (heat shock protein); heat shock protein DnaJ domain-containing protein 464220 5310495 Amet_0452 Alkaliphilus metalliredigens QYMF heat shock protein DnaJ domain-containing protein YP_001318339.1 463450 D 293826 CDS YP_001318340.1 150388291 5310496 464758..465237 1 NC_009633.1 PFAM: VanZ family protein; KEGG: dsy:DSY3286 hypothetical protein; VanZ family protein 465237 5310496 Amet_0453 Alkaliphilus metalliredigens QYMF VanZ family protein YP_001318340.1 464758 D 293826 CDS YP_001318341.1 150388292 5310497 complement(465310..466017) 1 NC_009633.1 PFAM: glutamine amidotransferase class-I; KEGG: pca:Pcar_2563 GMP synthase - glutamine amidotransferase domain; glutamine amidotransferase 466017 5310497 Amet_0454 Alkaliphilus metalliredigens QYMF glutamine amidotransferase YP_001318341.1 465310 R 293826 CDS YP_001318342.1 150388293 5310498 466370..467371 1 NC_009633.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: oih:OB3476 transcriptional repressor; alanine racemase 467371 5310498 Amet_0455 Alkaliphilus metalliredigens QYMF alanine racemase YP_001318342.1 466370 D 293826 CDS YP_001318343.1 150388294 5310499 467431..468453 1 NC_009633.1 KEGG: bms:BR0544 ribose ABC transporter, periplasmic D-ribose-binding protein; sugar ABC transporter periplasmic protein-like protein 468453 5310499 Amet_0456 Alkaliphilus metalliredigens QYMF sugar ABC transporter periplasmic protein-like protein YP_001318343.1 467431 D 293826 CDS YP_001318344.1 150388295 5310500 468517..470028 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB2574 ribose ABC transporter ATP-binding protein; ABC transporter-like protein 470028 5310500 Amet_0457 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001318344.1 468517 D 293826 CDS YP_001318345.1 150388296 5310501 470010..470987 1 NC_009633.1 PFAM: inner-membrane translocator; KEGG: cpf:CPF_1881 ribose ABC transporter, permease protein; monosaccharide-transporting ATPase 470987 5310501 Amet_0458 Alkaliphilus metalliredigens QYMF monosaccharide-transporting ATPase YP_001318345.1 470010 D 293826 CDS YP_001318346.1 150388297 5310502 471009..471944 1 NC_009633.1 PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tte:TTE1948 sugar phosphate isomerase/epimerase; xylose isomerase domain-containing protein 471944 5310502 Amet_0459 Alkaliphilus metalliredigens QYMF xylose isomerase domain-containing protein YP_001318346.1 471009 D 293826 CDS YP_001318347.1 150388298 5310503 471969..473018 1 NC_009633.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: bha:BH1248 NADH-dependent dyhydrogenase; oxidoreductase domain-containing protein 473018 5310503 Amet_0460 Alkaliphilus metalliredigens QYMF oxidoreductase domain-containing protein YP_001318347.1 471969 D 293826 CDS YP_001318348.1 150388299 5310504 complement(473171..473713) 1 NC_009633.1 KEGG: tde:TDE2712 hypothetical protein; hypothetical protein 473713 5310504 Amet_0461 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318348.1 473171 R 293826 CDS YP_001318349.1 150388300 5310505 473913..474896 1 NC_009633.1 PFAM: alpha/beta hydrolase fold; KEGG: chy:CHY_0890 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold protein 474896 5310505 Amet_0462 Alkaliphilus metalliredigens QYMF alpha/beta hydrolase fold protein YP_001318349.1 473913 D 293826 CDS YP_001318350.1 150388301 5310506 474940..475833 1 NC_009633.1 PFAM: metal-dependent protein hydrolase; KEGG: cps:CPS_2163 hypothetical protein; metal-dependent protein hydrolase 475833 5310506 Amet_0463 Alkaliphilus metalliredigens QYMF metal-dependent protein hydrolase YP_001318350.1 474940 D 293826 CDS YP_001318351.1 150388302 5310507 complement(475914..476963) 1 NC_009633.1 PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: cth:Cthe_1297 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 476963 5310507 Amet_0464 Alkaliphilus metalliredigens QYMF nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase YP_001318351.1 475914 R 293826 CDS YP_001318352.1 150388303 5310508 477801..479114 1 NC_009633.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: hma:pNG7256 xanthine permease; uracil-xanthine permease 479114 5310508 Amet_0465 Alkaliphilus metalliredigens QYMF uracil-xanthine permease YP_001318352.1 477801 D 293826 CDS YP_001318353.1 150388304 5310509 479340..479756 1 NC_009633.1 KEGG: swo:Swol_1757 hypothetical protein; hypothetical protein 479756 5310509 Amet_0466 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318353.1 479340 D 293826 CDS YP_001318354.1 150388305 5310510 480588..481895 1 NC_009633.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: bld:BLi03297 close homolog to McpA methyl-accepting chemotaxis protein; RBL01413; methyl-accepting chemotaxis sensory transducer 481895 5310510 Amet_0467 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001318354.1 480588 D 293826 CDS YP_001318355.1 150388306 5310511 481907..482116 1 NC_009633.1 hypothetical protein 482116 5310511 Amet_0468 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318355.1 481907 D 293826 CDS YP_001318356.1 150388307 5310513 483409..484200 1 NC_009633.1 PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: dps:DP3068 similar to 4-hydroxybenzoyl-CoA reductase (HcrB); FAD-binding molybdopterin dehydrogenase 484200 5310513 Amet_0470 Alkaliphilus metalliredigens QYMF FAD-binding molybdopterin dehydrogenase YP_001318356.1 483409 D 293826 CDS YP_001318357.1 150388308 5310514 484197..484649 1 NC_009633.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: dps:DP3067 4-hydroxybenzoyl-CoA reductase (HcrC); 2Fe-2S iron-sulfur cluster binding domain-containing protein 484649 5310514 Amet_0471 Alkaliphilus metalliredigens QYMF 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001318357.1 484197 D 293826 CDS YP_001318358.1 150388309 5310515 484652..486961 1 NC_009633.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: dps:DP3066 similar to 4-Hydroxybenzoyl-CoA reductase (HcrA); molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 486961 5310515 Amet_0472 Alkaliphilus metalliredigens QYMF molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001318358.1 484652 D 293826 CDS YP_001318359.1 150388310 5310516 complement(487055..487591) 1 NC_009633.1 hypothetical protein 487591 5310516 Amet_0473 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318359.1 487055 R 293826 CDS YP_001318360.1 150388311 5310517 488031..488363 1 NC_009633.1 KEGG: bca:BCE_2880 hypothetical protein; hypothetical protein 488363 5310517 Amet_0474 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318360.1 488031 D 293826 CDS YP_001318361.1 150388312 5310518 488686..489777 1 NC_009633.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: cac:CAC0192 similar to chloromuconate cycloisomerase; mandelate racemase/muconate lactonizing protein 489777 5310518 Amet_0475 Alkaliphilus metalliredigens QYMF mandelate racemase/muconate lactonizing protein YP_001318361.1 488686 D 293826 CDS YP_001318362.1 150388313 5310519 489809..490738 1 NC_009633.1 PFAM: peptidase U61, LD-carboxypeptidase A; KEGG: bld:BLi01397 YkfA; peptidase U61, LD-carboxypeptidase A 490738 5310519 Amet_0476 Alkaliphilus metalliredigens QYMF peptidase U61, LD-carboxypeptidase A YP_001318362.1 489809 D 293826 CDS YP_001318363.1 150388314 5310520 complement(490845..491831) 1 NC_009633.1 PFAM: peptidase M19, renal dipeptidase; KEGG: tko:TK2040 microsomal dipeptidase homolog; membrane dipeptidase 491831 5310520 Amet_0477 Alkaliphilus metalliredigens QYMF membrane dipeptidase YP_001318363.1 490845 R 293826 CDS YP_001318364.1 150388315 5310521 492143..492961 1 NC_009633.1 PFAM: regulatory protein, MerR; KEGG: dsy:DSY3698 hypothetical protein; MerR family transcriptional regulator 492961 5310521 Amet_0478 Alkaliphilus metalliredigens QYMF MerR family transcriptional regulator YP_001318364.1 492143 D 293826 CDS YP_001318365.1 150388316 5310522 493222..495150 1 NC_009633.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: eca:ECA0910 putative flavoprotein subunit of a reductase; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 495150 5310522 Amet_0479 Alkaliphilus metalliredigens QYMF fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_001318365.1 493222 D 293826 CDS YP_001318366.1 150388317 5310523 495476..496228 1 NC_009633.1 PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: tte:TTE0770 NCAIR mutase (PurE)-related proteins; 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase 496228 5310523 Amet_0480 Alkaliphilus metalliredigens QYMF 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase YP_001318366.1 495476 D 293826 CDS YP_001318367.1 150388318 5310524 496221..497486 1 NC_009633.1 PFAM: protein of unknown function DUF111; KEGG: cth:Cthe_0369 protein of unknown function DUF111; hypothetical protein 497486 5310524 Amet_0481 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318367.1 496221 D 293826 CDS YP_001318368.1 150388319 5310525 497536..498348 1 NC_009633.1 PFAM: ExsB family protein; KEGG: chy:CHY_1281 conserved hypothetical protein TIGR00268; ExsB family protein 498348 5310525 Amet_0482 Alkaliphilus metalliredigens QYMF ExsB family protein YP_001318368.1 497536 D 293826 CDS YP_001318369.1 150388320 5310526 498533..500191 1 NC_009633.1 PFAM: peptidase M20; KEGG: cac:CAC0367 arginine degradation protein (gene RocB); peptidase M20 500191 5310526 Amet_0483 Alkaliphilus metalliredigens QYMF peptidase M20 YP_001318369.1 498533 D 293826 CDS YP_001318370.1 150388321 5310527 500230..501423 1 NC_009633.1 TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: gka:GK1208 succinyl-CoA synthetase beta subunit (succinate-CoA ligase beta subunit); succinyl-CoA synthetase subunit beta 501423 5310527 Amet_0484 Alkaliphilus metalliredigens QYMF succinyl-CoA synthetase subunit beta YP_001318370.1 500230 D 293826 CDS YP_001318371.1 150388322 5310528 501407..502309 1 NC_009633.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 502309 5310528 Amet_0485 Alkaliphilus metalliredigens QYMF succinyl-CoA synthetase subunit alpha YP_001318371.1 501407 D 293826 CDS YP_001318372.1 150388323 5310529 502447..503469 1 NC_009633.1 KEGG: cth:Cthe_0320 hypothetical protein; hypothetical protein 503469 5310529 Amet_0486 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318372.1 502447 D 293826 CDS YP_001318373.1 150388324 5310530 503500..504444 1 NC_009633.1 PFAM: OmpA/MotB domain protein; KEGG: cjj:CJJ81176_0627 chemotaxis protein MotB, putative; OmpA/MotB domain-containing protein 504444 5310530 Amet_0487 Alkaliphilus metalliredigens QYMF OmpA/MotB domain-containing protein YP_001318373.1 503500 D 293826 CDS YP_001318374.1 150388325 5310531 504719..506431 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: oih:OB2520 two-component sensor histidine kinase involved in degradative enzyme; integral membrane sensor signal transduction histidine kinase 506431 5310531 Amet_0488 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001318374.1 504719 D 293826 CDS YP_001318375.1 150388326 5310532 506428..507045 1 NC_009633.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: tte:TTE1681 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; two component LuxR family transcriptional regulator 507045 5310532 Amet_0489 Alkaliphilus metalliredigens QYMF two component LuxR family transcriptional regulator YP_001318375.1 506428 D 293826 CDS YP_001318376.1 150388327 5310533 507100..507603 1 NC_009633.1 hypothetical protein 507603 5310533 Amet_0490 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318376.1 507100 D 293826 CDS YP_001318377.1 150388328 5310534 507674..508483 1 NC_009633.1 KEGG: hsa:1834 dentin sialophosphoprotein; hypothetical protein 508483 5310534 Amet_0491 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318377.1 507674 D 293826 CDS YP_001318378.1 150388329 5310535 508518..509726 1 NC_009633.1 TIGRFAM: peptidase S26B, signal peptidase; KEGG: cpf:CPF_2579 signal peptidase I; peptidase S26B, signal peptidase 509726 5310535 Amet_0492 Alkaliphilus metalliredigens QYMF peptidase S26B, signal peptidase YP_001318378.1 508518 D 293826 CDS YP_001318379.1 150388330 5310536 510087..510707 1 NC_009633.1 hypothetical protein 510707 5310536 Amet_0493 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318379.1 510087 D 293826 CDS YP_001318380.1 150388331 5310537 510757..511521 1 NC_009633.1 hypothetical protein 511521 5310537 Amet_0494 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318380.1 510757 D 293826 CDS YP_001318381.1 150388332 5310538 511669..512778 1 NC_009633.1 hypothetical protein 512778 5310538 Amet_0495 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318381.1 511669 D 293826 CDS YP_001318382.1 150388333 5310539 513172..514461 1 NC_009633.1 PFAM: S-layer domain protein; KEGG: cth:Cthe_1368 S-layer-like domain containing protein; S-layer protein 514461 5310539 Amet_0496 Alkaliphilus metalliredigens QYMF S-layer protein YP_001318382.1 513172 D 293826 CDS YP_001318383.1 150388334 5310540 514472..514813 1 NC_009633.1 hypothetical protein 514813 5310540 Amet_0497 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318383.1 514472 D 293826 CDS YP_001318384.1 150388335 5310541 515329..515988 1 NC_009633.1 PFAM: multi antimicrobial extrusion protein MatE; KEGG: cno:NT01CX_0285 MATE efflux family protein; multi anti extrusion protein MatE 515988 5310541 Amet_0498 Alkaliphilus metalliredigens QYMF multi anti extrusion protein MatE YP_001318384.1 515329 D 293826 CDS YP_001318385.1 150388336 5310542 516096..516554 1 NC_009633.1 KEGG: mkm:Mkms_5396 conserved hypothetical protein; hypothetical protein 516554 5310542 Amet_0499 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318385.1 516096 D 293826 CDS YP_001318386.1 150388337 5310543 complement(516869..517654) 1 NC_009633.1 PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; KEGG: cff:CFF8240_1062 transcriptional regulator, IclR family; transcriptional regulator IclR-like protein 517654 5310543 Amet_0500 Alkaliphilus metalliredigens QYMF transcriptional regulator IclR-like protein YP_001318386.1 516869 R 293826 CDS YP_001318387.1 150388338 5310544 518093..519523 1 NC_009633.1 PFAM: Gluconate transporter; Citrate transporter; KEGG: msu:MS0335 GntT protein; gluconate transporter 519523 5310544 Amet_0501 Alkaliphilus metalliredigens QYMF gluconate transporter YP_001318387.1 518093 D 293826 CDS YP_001318388.1 150388339 5310545 519626..521350 1 NC_009633.1 PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: rpc:RPC_4380 dihydroxy-acid dehydratase; dihydroxy-acid dehydratase 521350 5310545 Amet_0502 Alkaliphilus metalliredigens QYMF dihydroxy-acid dehydratase YP_001318388.1 519626 D 293826 CDS YP_001318389.1 150388340 5310546 521677..522579 1 NC_009633.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: cje:Cj0021c hypothetical protein; fumarylacetoacetate (FAA) hydrolase 522579 5310546 Amet_0503 Alkaliphilus metalliredigens QYMF fumarylacetoacetate (FAA) hydrolase YP_001318389.1 521677 D 293826 CDS YP_001318390.1 150388341 5310547 522612..523772 1 NC_009633.1 PFAM: aminotransferase, class I and II; KEGG: art:Arth_1423 aminotransferase, class I and II; class I and II aminotransferase 523772 5310547 Amet_0504 Alkaliphilus metalliredigens QYMF class I and II aminotransferase YP_001318390.1 522612 D 293826 CDS YP_001318391.1 150388342 5310548 523817..524605 1 NC_009633.1 PFAM: HpcH/HpaI aldolase; KEGG: ter:Tery_2821 HpcH/HpaI aldolase; 2-dehydro-3-deoxyglucarate aldolase 524605 5310548 Amet_0505 Alkaliphilus metalliredigens QYMF 2-dehydro-3-deoxyglucarate aldolase YP_001318391.1 523817 D 293826 CDS YP_001318392.1 150388343 5310549 524670..527090 1 NC_009633.1 TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: cno:NT01CX_0385 pyruvate formate-lyase; pyruvate formate-lyase 527090 5310549 Amet_0506 Alkaliphilus metalliredigens QYMF pyruvate formate-lyase YP_001318392.1 524670 D 293826 CDS YP_001318393.1 150388344 5310550 527125..527901 1 NC_009633.1 TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM domain protein; KEGG: spd:SPD_0229 glycyl-radical enzyme activating protein family protein; glycyl-radical activating family protein 527901 5310550 Amet_0507 Alkaliphilus metalliredigens QYMF glycyl-radical activating family protein YP_001318393.1 527125 D 293826 CDS YP_001318394.1 150388345 5310551 527981..528295 1 NC_009633.1 KEGG: tte:TTE1235 hypothetical protein; hypothetical protein 528295 5310551 Amet_0508 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318394.1 527981 D 293826 CDS YP_001318395.1 150388346 5310552 528288..529703 1 NC_009633.1 PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: tte:TTE1236 threonine synthase; pyridoxal-5'-phosphate-dependent protein subunit beta 529703 5310552 Amet_0509 Alkaliphilus metalliredigens QYMF pyridoxal-5'-phosphate-dependent protein subunit beta YP_001318395.1 528288 D 293826 CDS YP_001318396.1 150388347 5310553 529743..531092 1 NC_009633.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 531092 5310553 Amet_0510 Alkaliphilus metalliredigens QYMF 4-aminobutyrate aminotransferase YP_001318396.1 529743 D 293826 CDS YP_001318397.1 150388348 5310554 complement(531217..533358) 1 NC_009633.1 PFAM: ThiJ/PfpI domain protein; Catalase domain protein; KEGG: bha:BH1980 catalase; catalase 533358 5310554 Amet_0511 Alkaliphilus metalliredigens QYMF catalase YP_001318397.1 531217 R 293826 CDS YP_001318398.1 150388349 5310555 complement(533508..534623) 1 NC_009633.1 PFAM: spore germination B3 GerAC family protein; KEGG: bha:BH2186 hypothetical protein; spore germination B3 GerAC family protein 534623 5310555 Amet_0512 Alkaliphilus metalliredigens QYMF spore germination B3 GerAC family protein YP_001318398.1 533508 R 293826 CDS YP_001318399.1 150388350 5310556 complement(534644..535759) 1 NC_009633.1 TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: bcz:BCZK2852 spore germination protein; possible amino acid permease; spore germination protein 535759 5310556 Amet_0513 Alkaliphilus metalliredigens QYMF spore germination protein YP_001318399.1 534644 R 293826 CDS YP_001318400.1 150388351 5310557 complement(535778..537331) 1 NC_009633.1 PFAM: GerA spore germination protein; KEGG: bcz:pE33L466_0139 spore germination protein KA; GerA spore germination protein 537331 5310557 Amet_0514 Alkaliphilus metalliredigens QYMF GerA spore germination protein YP_001318400.1 535778 R 293826 CDS YP_001318401.1 150388352 5310558 537610..538482 1 NC_009633.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: fnu:FN1135 phosphonates-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 538482 5310558 Amet_0515 Alkaliphilus metalliredigens QYMF phosphonate ABC transporter periplasmic phosphonate-binding protein YP_001318401.1 537610 D 293826 CDS YP_001318402.1 150388353 5310559 538494..539240 1 NC_009633.1 TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ser:SERP2285 phosphonate ABC transporter, ATP-binding protein; phosphonate ABC transporter ATPase 539240 5310559 Amet_0516 Alkaliphilus metalliredigens QYMF phosphonate ABC transporter ATPase YP_001318402.1 538494 D 293826 CDS YP_001318403.1 150388354 5310560 539218..540834 1 NC_009633.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1137 phosphonates transport system permease protein phnE; phosphonate ABC transporter inner membrane protein 540834 5310560 Amet_0517 Alkaliphilus metalliredigens QYMF phosphonate ABC transporter inner membrane protein YP_001318403.1 539218 D 293826 CDS YP_001318404.1 150388355 5310561 complement(540894..541781) 1 NC_009633.1 PFAM: protein of unknown function DUF214; KEGG: chy:CHY_0168 cell division protein FtsX; hypothetical protein 541781 5310561 Amet_0518 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318404.1 540894 R 293826 CDS YP_001318405.1 150388356 5310562 complement(541783..542457) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY4865 hypothetical protein; ABC transporter-like protein 542457 5310562 Amet_0519 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001318405.1 541783 R 293826 CDS YP_001318406.1 150388357 5310563 complement(542484..543605) 1 NC_009633.1 KEGG: sth:STH2334 hypothetical protein; membrane-bound metallopeptidase-like protein 543605 5310563 Amet_0520 Alkaliphilus metalliredigens QYMF membrane-bound metallopeptidase-like protein YP_001318406.1 542484 R 293826 CDS YP_001318407.1 150388358 5310564 544144..546024 1 NC_009633.1 molecular chaperone; heat shock protein 90 546024 5310564 Amet_0521 Alkaliphilus metalliredigens QYMF heat shock protein 90 YP_001318407.1 544144 D 293826 CDS YP_001318408.1 150388359 5310565 546504..547139 1 NC_009633.1 KEGG: pmn:PMN2A_1035 ABC-type metal ion transport system periplasmic component; hypothetical protein 547139 5310565 Amet_0522 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318408.1 546504 D 293826 CDS YP_001318409.1 150388360 5310566 547161..547832 1 NC_009633.1 catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 547832 5310566 Amet_0523 Alkaliphilus metalliredigens QYMF cobalt transport protein CbiM YP_001318409.1 547161 D 293826 CDS YP_001318410.1 150388361 5310567 547861..548622 1 NC_009633.1 PFAM: cobalt transport protein; KEGG: mla:Mlab_1390 excinuclease ABC, C subunit domain protein; cobalt transport protein 548622 5310567 Amet_0524 Alkaliphilus metalliredigens QYMF cobalt transport protein YP_001318410.1 547861 D 293826 CDS YP_001318411.1 150388362 5310568 548619..549431 1 NC_009633.1 TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chy:CHY_1630 cobalt ABC transporter, ATP-binding protein; cobalt ABC transporter ATPase 549431 5310568 Amet_0525 Alkaliphilus metalliredigens QYMF cobalt ABC transporter ATPase YP_001318411.1 548619 D 293826 CDS YP_001318412.1 150388363 5310569 549493..549930 1 NC_009633.1 KEGG: tde:TDE2130 hypothetical protein; hypothetical protein 549930 5310569 Amet_0526 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318412.1 549493 D 293826 CDS YP_001318413.1 150388364 5310570 complement(550244..551284) 1 NC_009633.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: swo:Swol_1894 HD-GYP domain; metal dependent phosphohydrolase 551284 5310570 Amet_0527 Alkaliphilus metalliredigens QYMF metal dependent phosphohydrolase YP_001318413.1 550244 R 293826 CDS YP_001318414.1 150388365 5310571 551514..552341 1 NC_009633.1 PFAM: protein of unknown function DUF34; KEGG: chy:CHY_1566 hypothetical protein; hypothetical protein 552341 5310571 Amet_0528 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318414.1 551514 D 293826 CDS YP_001318415.1 150388366 5310572 552516..553244 1 NC_009633.1 KEGG: sus:Acid_5580 putative transmembrane protein; putative transmembrane protein 553244 5310572 Amet_0529 Alkaliphilus metalliredigens QYMF putative transmembrane protein YP_001318415.1 552516 D 293826 CDS YP_001318416.1 150388367 5310573 553418..553774 1 NC_009633.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: mma:MM3062 hypothetical protein; peptidase M15A 553774 5310573 Amet_0530 Alkaliphilus metalliredigens QYMF peptidase M15A YP_001318416.1 553418 D 293826 CDS YP_001318417.1 150388368 5310574 553838..554464 1 NC_009633.1 PFAM: Phosphoglycerate mutase; KEGG: gka:GK1466 phosphoglycerate mutase; phosphoglycerate mutase 554464 5310574 Amet_0531 Alkaliphilus metalliredigens QYMF phosphoglycerate mutase YP_001318417.1 553838 D 293826 CDS YP_001318418.1 150388369 5310575 complement(554573..554884) 1 NC_009633.1 PFAM: protein of unknown function DUF74; KEGG: cno:NT01CX_0170 hypothetical UPF0145 protein; hypothetical protein 554884 5310575 Amet_0532 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318418.1 554573 R 293826 CDS YP_001318419.1 150388370 5310576 complement(554865..555104) 1 NC_009633.1 hypothetical protein 555104 5310576 Amet_0533 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318419.1 554865 R 293826 CDS YP_001318420.1 150388371 5310577 complement(555108..555374) 1 NC_009633.1 KEGG: oih:OB2607 hypothetical protein; hypothetical protein 555374 5310577 Amet_0534 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318420.1 555108 R 293826 CDS YP_001318421.1 150388372 5310578 555525..556361 1 NC_009633.1 KEGG: tte:TTE0483 hypothetical protein; hypothetical protein 556361 5310578 Amet_0535 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318421.1 555525 D 293826 CDS YP_001318422.1 150388373 5310579 556434..556637 1 NC_009633.1 hypothetical protein 556637 5310579 Amet_0536 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318422.1 556434 D 293826 CDS YP_001318423.1 150388374 5310580 556954..557577 1 NC_009633.1 PFAM: beta-lactamase domain protein; KEGG: bcl:ABC2499 hypothetical protein; beta-lactamase domain-containing protein 557577 5310580 Amet_0537 Alkaliphilus metalliredigens QYMF beta-lactamase domain-containing protein YP_001318423.1 556954 D 293826 CDS YP_001318424.1 150388375 5310581 complement(557742..559028) 1 NC_009633.1 KEGG: dsy:DSY3881 hypothetical protein; hypothetical protein 559028 5310581 Amet_0538 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318424.1 557742 R 293826 CDS YP_001318425.1 150388376 5310582 559368..560537 1 NC_009633.1 KEGG: sal:Sala_1461 uncharacterized membrane protein-like protein; hypothetical protein 560537 5310582 Amet_0539 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318425.1 559368 D 293826 CDS YP_001318426.1 150388377 5310583 complement(560690..561643) 1 NC_009633.1 PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: tac:Ta0113 probable threonine dehydratase, biodegradative; pyridoxal-5'-phosphate-dependent protein subunit beta 561643 5310583 Amet_0540 Alkaliphilus metalliredigens QYMF pyridoxal-5'-phosphate-dependent protein subunit beta YP_001318426.1 560690 R 293826 CDS YP_001318427.1 150388378 5310584 complement(561785..562747) 1 NC_009633.1 PFAM: Peptidoglycan-binding domain 1 protein; Peptidoglycan-binding LysM; KEGG: tte:TTE2219 LysM-repeat proteins and domains; peptidoglycan binding domain-containing protein 562747 5310584 Amet_0541 Alkaliphilus metalliredigens QYMF peptidoglycan binding domain-containing protein YP_001318427.1 561785 R 293826 CDS YP_001318428.1 150388379 5310585 563103..565271 1 NC_009633.1 PFAM: Peptidoglycan-binding LysM; metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: bld:BLi00814 similar to 2',3'-cyclic-nucleotide 2'-phosphodiesterase; RBL02320; 5'-nucleotidase domain-containing protein 565271 5310585 Amet_0542 Alkaliphilus metalliredigens QYMF 5'-nucleotidase domain-containing protein YP_001318428.1 563103 D 293826 CDS YP_001318429.1 150388380 5310586 complement(565341..566498) 1 NC_009633.1 PFAM: YibE/F family protein; KEGG: cac:CAC2436 hypothetical protein; hypothetical protein 566498 5310586 Amet_0543 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318429.1 565341 R 293826 CDS YP_001318430.1 150388381 5310587 complement(566552..567400) 1 NC_009633.1 PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: bld:BLi00865 YfiF; helix-turn-helix domain-containing protein 567400 5310587 Amet_0544 Alkaliphilus metalliredigens QYMF helix-turn-helix domain-containing protein YP_001318430.1 566552 R 293826 CDS YP_001318431.1 150388382 5310588 567629..569026 1 NC_009633.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pho:PH0577 damage-inducible protein; MATE efflux family protein 569026 5310588 Amet_0545 Alkaliphilus metalliredigens QYMF MATE efflux family protein YP_001318431.1 567629 D 293826 CDS YP_001318432.1 150388383 5310589 569181..569891 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_1288 two component transcriptional regulator, winged helix family; two component transcriptional regulator 569891 5310589 Amet_0546 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001318432.1 569181 D 293826 CDS YP_001318433.1 150388384 5310590 569884..571275 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: cac:CAC3219 membrane associated histidine kinase with HAMP domain; integral membrane sensor signal transduction histidine kinase 571275 5310590 Amet_0547 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001318433.1 569884 D 293826 CDS YP_001318434.1 150388385 5310591 complement(571409..571888) 1 NC_009633.1 hypothetical protein 571888 5310591 Amet_0548 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318434.1 571409 R 293826 CDS YP_001318435.1 150388386 5310592 complement(572006..572785) 1 NC_009633.1 PFAM: phospholipase C zinc-binding protein; KEGG: cth:Cthe_3193 phospholipase C zinc-binding; phospholipase C zinc-binding protein 572785 5310592 Amet_0549 Alkaliphilus metalliredigens QYMF phospholipase C zinc-binding protein YP_001318435.1 572006 R 293826 CDS YP_001318436.1 150388387 5310593 573390..574424 1 NC_009633.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rsp:RSP_1605 TRAP-T family transporter, periplasmic binding protein, DctP; TRAP dicarboxylate transporter subunit DctP 574424 5310593 Amet_0550 Alkaliphilus metalliredigens QYMF TRAP dicarboxylate transporter subunit DctP YP_001318436.1 573390 D 293826 CDS YP_001318437.1 150388388 5310594 574564..575079 1 NC_009633.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: oih:OB0242 C4-dicarboxylate transport system permease small protein; tripartite ATP-independent periplasmic transporter DctQ 575079 5310594 Amet_0551 Alkaliphilus metalliredigens QYMF tripartite ATP-independent periplasmic transporter DctQ YP_001318437.1 574564 D 293826 CDS YP_001318438.1 150388389 5310595 575070..576359 1 NC_009633.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: msu:MS0528 hypothetical protein; TRAP dicarboxylate transporter subunit DctM 576359 5310595 Amet_0552 Alkaliphilus metalliredigens QYMF TRAP dicarboxylate transporter subunit DctM YP_001318438.1 575070 D 293826 CDS YP_001318439.1 150388390 5310596 576459..577115 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: tte:TTE2558 transcriptional regulator; GntR family transcriptional regulator 577115 5310596 Amet_0553 Alkaliphilus metalliredigens QYMF GntR family transcriptional regulator YP_001318439.1 576459 D 293826 CDS YP_001318440.1 150388391 5310597 577209..578237 1 NC_009633.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bth:BT_3617 sorbitol dehydrogenase; alcohol dehydrogenase 578237 5310597 Amet_0554 Alkaliphilus metalliredigens QYMF alcohol dehydrogenase YP_001318440.1 577209 D 293826 CDS YP_001318441.1 150388392 5310598 578335..579786 1 NC_009633.1 catalyzes the formation of D-tagaturonate from D-altronate; altronate oxidoreductase 579786 5310598 Amet_0555 Alkaliphilus metalliredigens QYMF altronate oxidoreductase YP_001318441.1 578335 D 293826 CDS YP_001318442.1 150388393 5310599 579788..581275 1 NC_009633.1 PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: cac:CAC0696 putative altronate dehydratase; altronate dehydratase 581275 5310599 Amet_0556 Alkaliphilus metalliredigens QYMF altronate dehydratase YP_001318442.1 579788 D 293826 CDS YP_001318443.1 150388394 5310600 581628..583130 1 NC_009633.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: tte:TTE2002 glycerol kinase; glycerol kinase 583130 5310600 Amet_0557 Alkaliphilus metalliredigens QYMF glycerol kinase YP_001318443.1 581628 D 293826 CDS YP_001318444.1 150388395 5310601 583641..584708 1 NC_009633.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: fnu:FN1258 C4-dicarboxylate-binding protein; TRAP dicarboxylate transporter subunit DctP 584708 5310601 Amet_0558 Alkaliphilus metalliredigens QYMF TRAP dicarboxylate transporter subunit DctP YP_001318444.1 583641 D 293826 CDS YP_001318445.1 150388396 5310602 584865..585377 1 NC_009633.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: fnu:FN1257 C4-dicarboxylate transporter small subunit; tripartite ATP-independent periplasmic transporter DctQ 585377 5310602 Amet_0559 Alkaliphilus metalliredigens QYMF tripartite ATP-independent periplasmic transporter DctQ YP_001318445.1 584865 D 293826 CDS YP_001318446.1 150388397 5310603 585415..586695 1 NC_009633.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: fnu:FN1256 C4-dicarboxylate transporter large subunit; TRAP dicarboxylate transporter subunit DctM 586695 5310603 Amet_0560 Alkaliphilus metalliredigens QYMF TRAP dicarboxylate transporter subunit DctM YP_001318446.1 585415 D 293826 CDS YP_001318447.1 150388398 5310604 586716..587423 1 NC_009633.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: fnu:FN1891 glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase 587423 5310604 Amet_0561 Alkaliphilus metalliredigens QYMF glycerophosphodiester phosphodiesterase YP_001318447.1 586716 D 293826 CDS YP_001318448.1 150388399 5310605 587562..588128 1 NC_009633.1 PFAM: glycerol-3-phosphate responsive antiterminator; KEGG: cno:NT01CX_0613 glycerol uptake operon antiterminator regulatory protein; glycerol-3-phosphate responsive antiterminator 588128 5310605 Amet_0562 Alkaliphilus metalliredigens QYMF glycerol-3-phosphate responsive antiterminator YP_001318448.1 587562 D 293826 CDS YP_001318449.1 150388400 5310606 588277..589002 1 NC_009633.1 PFAM: amino acid-binding ACT domain protein; MgtC/SapB transporter; KEGG: cth:Cthe_1919 MgtC/SapB transporter; MgtC/SapB transporter 589002 5310606 Amet_0563 Alkaliphilus metalliredigens QYMF MgtC/SapB transporter YP_001318449.1 588277 D 293826 CDS YP_001318450.1 150388401 5310607 589113..590411 1 NC_009633.1 KEGG: dsy:DSY3881 hypothetical protein; hypothetical protein 590411 5310607 Amet_0564 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318450.1 589113 D 293826 CDS YP_001318451.1 150388402 5310608 590544..591047 1 NC_009633.1 KEGG: cth:Cthe_1377 amino acid-binding ACT; hypothetical protein 591047 5310608 Amet_0565 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318451.1 590544 D 293826 CDS YP_001318452.1 150388403 5310609 591090..592388 1 NC_009633.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 592388 5310609 Amet_0566 Alkaliphilus metalliredigens QYMF homoserine dehydrogenase YP_001318452.1 591090 D 293826 CDS YP_001318453.1 150388404 5310610 592441..593502 1 NC_009633.1 TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: tte:TTE2619 threonine synthase; threonine synthase 593502 5310610 Amet_0567 Alkaliphilus metalliredigens QYMF threonine synthase YP_001318453.1 592441 D 293826 CDS YP_001318454.1 150388405 5310611 593504..594400 1 NC_009633.1 TIGRFAM: homoserine kinase; PFAM: GHMP kinase; KEGG: ctc:CTC02357 homoserine kinase; homoserine kinase 594400 5310611 Amet_0568 Alkaliphilus metalliredigens QYMF homoserine kinase YP_001318454.1 593504 D 293826 CDS YP_001318455.1 150388406 5310612 594647..594910 1 NC_009633.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: ade:Adeh_0152 HPrNtr; phosphotransferase system, phosphocarrier protein HPr 594910 5310612 Amet_0569 Alkaliphilus metalliredigens QYMF phosphotransferase system, phosphocarrier protein HPr YP_001318455.1 594647 D 293826 CDS YP_001318456.1 150388407 5310613 595096..596286 1 NC_009633.1 PFAM: tRNA synthetase, class II (G, H, P and S); KEGG: cth:Cthe_2880 histidyl-tRNA synthetase; histidine--tRNA ligase 596286 5310613 Amet_0570 Alkaliphilus metalliredigens QYMF histidine--tRNA ligase YP_001318456.1 595096 D 293826 CDS YP_001318457.1 150388408 5310614 596386..597015 1 NC_009633.1 TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase, catalytic region; KEGG: cac:CAC0936 ATP phosphoribosyltransferase; ATP phosphoribosyltransferase 597015 5310614 Amet_0571 Alkaliphilus metalliredigens QYMF ATP phosphoribosyltransferase YP_001318457.1 596386 D 293826 CDS YP_001318458.1 150388409 5310615 597030..598331 1 NC_009633.1 PFAM: histidinol dehydrogenase; KEGG: tte:TTE2138 histidinol dehydrogenase; histidinol dehydrogenase 598331 5310615 Amet_0572 Alkaliphilus metalliredigens QYMF histidinol dehydrogenase YP_001318458.1 597030 D 293826 CDS YP_001318459.1 150388410 5310616 598321..599412 1 NC_009633.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; Allinase-like; KEGG: cno:NT01CX_1063 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase 599412 5310616 Amet_0573 Alkaliphilus metalliredigens QYMF histidinol-phosphate aminotransferase YP_001318459.1 598321 D 293826 CDS YP_001318460.1 150388411 5310617 599442..600029 1 NC_009633.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: cth:Cthe_2884 imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 600029 5310617 Amet_0574 Alkaliphilus metalliredigens QYMF imidazoleglycerol-phosphate dehydratase YP_001318460.1 599442 D 293826 CDS YP_001318461.1 150388412 5310618 600045..600653 1 NC_009633.1 TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; CobB/CobQ domain protein glutamine amidotransferase; KEGG: tte:TTE2135 glutamine amidotransferase; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 600653 5310618 Amet_0575 Alkaliphilus metalliredigens QYMF imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_001318461.1 600045 D 293826 CDS YP_001318462.1 150388413 5310619 600650..601363 1 NC_009633.1 TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; KEGG: oih:OB0548 phosphoribosyl formimino-5-aminoimidazole isomerase; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase 601363 5310619 Amet_0576 Alkaliphilus metalliredigens QYMF phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase YP_001318462.1 600650 D 293826 CDS YP_001318463.1 150388414 5310620 601360..602118 1 NC_009633.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: tte:TTE2133 imidazoleglycerol-phosphate synthase; Imidazole glycerol phosphate synthase cyclase subunit 602118 5310620 Amet_0577 Alkaliphilus metalliredigens QYMF Imidazole glycerol phosphate synthase cyclase subunit YP_001318463.1 601360 D 293826 CDS YP_001318464.1 150388415 5310621 602127..602777 1 NC_009633.1 PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: tte:TTE2132 phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase 602777 5310621 Amet_0578 Alkaliphilus metalliredigens QYMF phosphoribosyl-AMP cyclohydrolase YP_001318464.1 602127 D 293826 CDS YP_001318465.1 150388416 5310622 complement(602876..606316) 1 NC_009633.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 606316 5310622 Amet_0579 Alkaliphilus metalliredigens QYMF pyruvate carboxylase YP_001318465.1 602876 R 293826 CDS YP_001318466.1 150388417 5310623 606747..608246 1 NC_009633.1 PFAM: sodium:neurotransmitter symporter; KEGG: cfe:CF0515 sodium-dependent transporter; sodium:neurotransmitter symporter 608246 5310623 Amet_0580 Alkaliphilus metalliredigens QYMF sodium:neurotransmitter symporter YP_001318466.1 606747 D 293826 CDS YP_001318467.1 150388418 5310624 608681..608827 1 NC_009633.1 hypothetical protein 608827 5310624 Amet_0581 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318467.1 608681 D 293826 CDS YP_001318468.1 150388419 5310625 608889..610631 1 NC_009633.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC0250 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 610631 5310625 Amet_0582 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001318468.1 608889 D 293826 CDS YP_001318469.1 150388420 5310626 610847..611740 1 NC_009633.1 TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: tko:TK0290 pyruvate-formate lyase-activating enzyme; glycyl-radical activating family protein 611740 5310626 Amet_0583 Alkaliphilus metalliredigens QYMF glycyl-radical activating family protein YP_001318469.1 610847 D 293826 CDS YP_001318470.1 150388421 5310627 611742..614120 1 NC_009633.1 PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: gsu:GSU2101 formate acetyltransferase; formate C-acetyltransferase 614120 5310627 Amet_0584 Alkaliphilus metalliredigens QYMF formate C-acetyltransferase YP_001318470.1 611742 D 293826 CDS YP_001318471.1 150388422 5310628 614384..615139 1 NC_009633.1 TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: fnu:FN0047 exodeoxyribonuclease III; exodeoxyribonuclease III Xth 615139 5310628 Amet_0585 Alkaliphilus metalliredigens QYMF exodeoxyribonuclease III Xth YP_001318471.1 614384 D 293826 CDS YP_001318472.1 150388423 5310629 615535..616536 1 NC_009633.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: btl:BALH_0606 ribose operon repressor; periplasmic binding protein/LacI transcriptional regulator 616536 5310629 Amet_0586 Alkaliphilus metalliredigens QYMF periplasmic binding protein/LacI transcriptional regulator YP_001318472.1 615535 D 293826 CDS YP_001318473.1 150388424 5310630 616615..618111 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK1894 sugar ABC transporter (ATP-binding protein); ABC transporter-like protein 618111 5310630 Amet_0587 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001318473.1 616615 D 293826 CDS YP_001318474.1 150388425 5310631 618127..619116 1 NC_009633.1 PFAM: inner-membrane translocator; KEGG: ret:RHE_CH01211 probable sugar ABC transporter, permease protein; monosaccharide-transporting ATPase 619116 5310631 Amet_0588 Alkaliphilus metalliredigens QYMF monosaccharide-transporting ATPase YP_001318474.1 618127 D 293826 CDS YP_001318475.1 150388426 5310632 619165..620151 1 NC_009633.1 KEGG: bha:BH2323 putative simple sugar transport system substrate-binding protein; sugar ABC transporter periplasmic protein-like protein 620151 5310632 Amet_0589 Alkaliphilus metalliredigens QYMF sugar ABC transporter periplasmic protein-like protein YP_001318475.1 619165 D 293826 CDS YP_001318476.1 150388427 5310633 620247..621287 1 NC_009633.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cpf:CPF_0732 L-iditol 2-dehydrogenase; alcohol dehydrogenase 621287 5310633 Amet_0590 Alkaliphilus metalliredigens QYMF alcohol dehydrogenase YP_001318476.1 620247 D 293826 CDS YP_001318477.1 150388428 5310634 621325..622797 1 NC_009633.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: mta:Moth_2025 xylulokinase; xylulokinase 622797 5310634 Amet_0591 Alkaliphilus metalliredigens QYMF xylulokinase YP_001318477.1 621325 D 293826 CDS YP_001318478.1 150388429 5310635 622972..623955 1 NC_009633.1 catalyzes the formation of pyruvate from D-cysteine; D-cysteine desulfhydrase 623955 5310635 Amet_0592 Alkaliphilus metalliredigens QYMF D-cysteine desulfhydrase YP_001318478.1 622972 D 293826 CDS YP_001318479.1 150388430 5310636 complement(623952..624608) 1 NC_009633.1 PFAM: nitroreductase; KEGG: tte:TTE1807 nitroreductase; nitroreductase 624608 5310636 Amet_0593 Alkaliphilus metalliredigens QYMF nitroreductase YP_001318479.1 623952 R 293826 CDS YP_001318480.1 150388431 5310637 624743..628168 1 NC_009633.1 PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SNF2 helicase associated domain protein; SMART: DEAD-like helicases-like; KEGG: cth:Cthe_2451 SNF2-related protein; non-specific serine/threonine protein kinase 628168 5310637 Amet_0594 Alkaliphilus metalliredigens QYMF non-specific serine/threonine protein kinase YP_001318480.1 624743 D 293826 CDS YP_001318481.1 150388432 5310638 628403..628684 1 NC_009633.1 TIGRFAM: prevent-host-death family protein; KEGG: swo:Swol_1410 hypothetical protein; prevent-host-death family protein 628684 5310638 Amet_0595 Alkaliphilus metalliredigens QYMF prevent-host-death family protein YP_001318481.1 628403 D 293826 CDS YP_001318482.1 150388433 5310639 628674..628991 1 NC_009633.1 PFAM: plasmid stabilization system; KEGG: dsy:DSY1238 hypothetical protein; plasmid stabilization system protein 628991 5310639 Amet_0596 Alkaliphilus metalliredigens QYMF plasmid stabilization system protein YP_001318482.1 628674 D 293826 CDS YP_001318483.1 150388434 5310640 629292..629876 1 NC_009633.1 PFAM: regulatory protein, TetR; KEGG: bld:BLi02021 hypothetical protein; TetR family transcriptional regulator 629876 5310640 Amet_0597 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001318483.1 629292 D 293826 CDS YP_001318484.1 150388435 5310641 629882..630592 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_1715 ATPase; ABC transporter-like protein 630592 5310641 Amet_0598 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001318484.1 629882 D 293826 CDS YP_001318485.1 150388436 5310642 630592..632949 1 NC_009633.1 PFAM: protein of unknown function DUF214; KEGG: swo:Swol_1714 hypothetical protein; hypothetical protein 632949 5310642 Amet_0599 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318485.1 630592 D 293826 CDS YP_001318486.1 150388437 5310643 632992..634224 1 NC_009633.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment domain-containing protein; secretion protein HlyD family protein; KEGG: dsy:DSY1327 hypothetical protein; RND family efflux transporter MFP subunit 634224 5310643 Amet_0600 Alkaliphilus metalliredigens QYMF RND family efflux transporter MFP subunit YP_001318486.1 632992 D 293826 CDS YP_001318487.1 150388438 5310644 634291..635652 1 NC_009633.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY4423 hypothetical protein; radical SAM domain-containing protein 635652 5310644 Amet_0601 Alkaliphilus metalliredigens QYMF radical SAM domain-containing protein YP_001318487.1 634291 D 293826 CDS YP_001318488.1 150388439 5310645 635777..637660 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; NMT1/THI5 like; KEGG: wsu:WS1436 putative two-component sensor; integral membrane sensor signal transduction histidine kinase 637660 5310645 Amet_0602 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001318488.1 635777 D 293826 CDS YP_001318489.1 150388440 5310646 637647..638432 1 NC_009633.1 PFAM: response regulator receiver; KEGG: ppd:Ppro_0115 response regulator receiver modulated diguanylate cyclase; response regulator receiver protein 638432 5310646 Amet_0603 Alkaliphilus metalliredigens QYMF response regulator receiver protein YP_001318489.1 637647 D 293826 CDS YP_001318490.1 150388441 5310647 638746..640101 1 NC_009633.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: efa:EF2573 xanthine/uracil permease family protein; uracil-xanthine permease 640101 5310647 Amet_0604 Alkaliphilus metalliredigens QYMF uracil-xanthine permease YP_001318490.1 638746 D 293826 CDS YP_001318491.1 150388442 5310648 640104..640907 1 NC_009633.1 PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: dps:DP3068 similar to 4-hydroxybenzoyl-CoA reductase (HcrB); FAD-binding molybdopterin dehydrogenase 640907 5310648 Amet_0605 Alkaliphilus metalliredigens QYMF FAD-binding molybdopterin dehydrogenase YP_001318491.1 640104 D 293826 CDS YP_001318492.1 150388443 5310649 640897..641364 1 NC_009633.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: dps:DP3067 4-hydroxybenzoyl-CoA reductase (HcrC); 2Fe-2S iron-sulfur cluster binding domain-containing protein 641364 5310649 Amet_0606 Alkaliphilus metalliredigens QYMF 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001318492.1 640897 D 293826 CDS YP_001318493.1 150388444 5310650 641348..643642 1 NC_009633.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: dps:DP3066 similar to 4-Hydroxybenzoyl-CoA reductase (HcrA); xanthine dehydrogenase 643642 5310650 Amet_0607 Alkaliphilus metalliredigens QYMF xanthine dehydrogenase YP_001318493.1 641348 D 293826 CDS YP_001318494.1 150388445 5310651 644177..645730 1 NC_009633.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; KEGG: tte:TTE1442 flagellar biosynthesis/type III secretory pathway lipoprotein; flagellar M-ring protein FliF 645730 5310651 Amet_0608 Alkaliphilus metalliredigens QYMF flagellar M-ring protein FliF YP_001318494.1 644177 D 293826 CDS YP_001318495.1 150388446 5310652 645741..646760 1 NC_009633.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 646760 fliG 5310652 fliG Alkaliphilus metalliredigens QYMF flagellar motor switch protein G YP_001318495.1 645741 D 293826 CDS YP_001318496.1 150388447 5310654 646954..647370 1 NC_009633.1 PFAM: flagellar basal body-associated protein FliL; KEGG: tte:TTE1431 flagellar basal body-associated protein; flagellar basal body-associated protein FliL 647370 5310654 Amet_0611 Alkaliphilus metalliredigens QYMF flagellar basal body-associated protein FliL YP_001318496.1 646954 D 293826 CDS YP_001318497.1 150388448 5310655 647383..648378 1 NC_009633.1 PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: cth:Cthe_0477 flagellar motor switch protein FliM; flagellar motor switch protein FliM 648378 5310655 Amet_0612 Alkaliphilus metalliredigens QYMF flagellar motor switch protein FliM YP_001318497.1 647383 D 293826 CDS YP_001318498.1 150388449 5310656 648371..648802 1 NC_009633.1 TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: tte:TTE1429 chemotaxis protein CheC, inhibitor of MCP methylation; flagellar motor switch protein FliN 648802 5310656 Amet_0613 Alkaliphilus metalliredigens QYMF flagellar motor switch protein FliN YP_001318498.1 648371 D 293826 CDS YP_001318499.1 150388450 5310657 648936..649298 1 NC_009633.1 PFAM: response regulator receiver; KEGG: cth:Cthe_0479 response regulator receiver protein; response regulator receiver protein 649298 5310657 Amet_0614 Alkaliphilus metalliredigens QYMF response regulator receiver protein YP_001318499.1 648936 D 293826 CDS YP_001318500.1 150388451 5310658 649363..651390 1 NC_009633.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: cth:Cthe_0485 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA 651390 5310658 Amet_0615 Alkaliphilus metalliredigens QYMF flagellar biosynthesis protein FlhA YP_001318500.1 649363 D 293826 CDS YP_001318501.1 150388452 5310659 complement(651485..652816) 1 NC_009633.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bha:BH4045 hypothetical protein; MATE efflux family protein 652816 5310659 Amet_0616 Alkaliphilus metalliredigens QYMF MATE efflux family protein YP_001318501.1 651485 R 293826 CDS YP_001318502.1 150388453 5310660 652904..653725 1 NC_009633.1 PFAM: regulatory protein, MerR; KEGG: bsu:BG10904 transcriptional regulator of the bltD operon; MerR family transcriptional regulator 653725 5310660 Amet_0617 Alkaliphilus metalliredigens QYMF MerR family transcriptional regulator YP_001318502.1 652904 D 293826 CDS YP_001318503.1 150388454 5310661 654230..654958 1 NC_009633.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: fnu:FN0219 autolysin response regulator; LytTR family two component transcriptional regulator 654958 5310661 Amet_0618 Alkaliphilus metalliredigens QYMF LytTR family two component transcriptional regulator YP_001318503.1 654230 D 293826 CDS YP_001318504.1 150388455 5310662 654968..656290 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; KEGG: cpf:CPF_0499 sensor histidine kinase; signal transduction histidine kinase regulating citrate/malate metabolism 656290 5310662 Amet_0619 Alkaliphilus metalliredigens QYMF signal transduction histidine kinase regulating citrate/malate metabolism YP_001318504.1 654968 D 293826 CDS YP_001318505.1 150388456 5310663 656410..656991 1 NC_009633.1 PFAM: Accessory gene regulator B; KEGG: dsy:DSY2528 hypothetical protein; accessory gene regulator B 656991 5310663 Amet_0620 Alkaliphilus metalliredigens QYMF accessory gene regulator B YP_001318505.1 656410 D 293826 CDS YP_001318506.1 150388457 5310664 657304..658134 1 NC_009633.1 hypothetical protein 658134 5310664 Amet_0621 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318506.1 657304 D 293826 CDS YP_001318507.1 150388458 5310665 658891..660129 1 NC_009633.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: mac:MA4183 reverse transcriptase; RNA-directed DNA polymerase 660129 5310665 Amet_0622 Alkaliphilus metalliredigens QYMF RNA-directed DNA polymerase YP_001318507.1 658891 D 293826 CDS YP_001318508.1 150388459 5310666 complement(660216..661823) 1 NC_009633.1 KEGG: mhu:Mhun_1523 transposase, IS4; transposase, IS4 661823 5310666 Amet_0623 Alkaliphilus metalliredigens QYMF transposase, IS4 YP_001318508.1 660216 R 293826 CDS YP_001318509.1 150388460 5310667 662490..662654 1 NC_009633.1 hypothetical protein 662654 5310667 Amet_0624 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318509.1 662490 D 293826 CDS YP_001318510.1 150388461 5310668 662790..663101 1 NC_009633.1 hypothetical protein 663101 5310668 Amet_0625 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318510.1 662790 D 293826 CDS YP_001318511.1 150388462 5310669 663255..663413 1 NC_009633.1 hypothetical protein 663413 5310669 Amet_0626 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318511.1 663255 D 293826 CDS YP_001318512.1 150388463 5310670 663437..663565 1 NC_009633.1 hypothetical protein 663565 5310670 Amet_0627 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318512.1 663437 D 293826 CDS YP_001318513.1 150388464 5310671 663599..664483 1 NC_009633.1 hypothetical protein 664483 5310671 Amet_0628 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318513.1 663599 D 293826 CDS YP_001318514.1 150388465 5310672 664839..665570 1 NC_009633.1 hypothetical protein 665570 5310672 Amet_0629 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318514.1 664839 D 293826 CDS YP_001318515.1 150388466 5310673 665839..666024 1 NC_009633.1 hypothetical protein 666024 5310673 Amet_0630 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318515.1 665839 D 293826 CDS YP_001318516.1 150388467 5310674 666043..666534 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; KEGG: cpf:CPF_0499 sensor histidine kinase; ATPase domain-containing protein 666534 5310674 Amet_0631 Alkaliphilus metalliredigens QYMF ATPase domain-containing protein YP_001318516.1 666043 D 293826 CDS YP_001318517.1 150388468 5310675 666880..667380 1 NC_009633.1 hypothetical protein 667380 5310675 Amet_0632 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318517.1 666880 D 293826 CDS YP_001318518.1 150388469 5310676 667384..667740 1 NC_009633.1 KEGG: bcz:pE33L5_0002 hypothetical protein; hypothetical protein 667740 5310676 Amet_0633 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318518.1 667384 D 293826 CDS YP_001318519.1 150388470 5310677 667748..668221 1 NC_009633.1 hypothetical protein 668221 5310677 Amet_0634 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318519.1 667748 D 293826 CDS YP_001318520.1 150388471 5310679 669553..670056 1 NC_009633.1 KEGG: tte:TTE0622 hypothetical protein; hypothetical protein 670056 5310679 Amet_0636 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318520.1 669553 D 293826 CDS YP_001318521.1 150388472 5310680 670228..670965 1 NC_009633.1 PFAM: protein of unknown function DUF881; KEGG: tte:TTE1642 hypothetical protein; hypothetical protein 670965 5310680 Amet_0637 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318521.1 670228 D 293826 CDS YP_001318522.1 150388473 5310681 671168..671677 1 NC_009633.1 PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: pca:Pcar_1846 NADH:ubiquinone oxidoreductase 24 kD subunit-like; NADH dehydrogenase (ubiquinone), 24 kDa subunit 671677 5310681 Amet_0638 Alkaliphilus metalliredigens QYMF NADH dehydrogenase (ubiquinone), 24 kDa subunit YP_001318522.1 671168 D 293826 CDS YP_001318523.1 150388474 5310682 671689..672078 1 NC_009633.1 KEGG: mta:Moth_1718 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 672078 5310682 Amet_0639 Alkaliphilus metalliredigens QYMF NADH dehydrogenase (quinone) YP_001318523.1 671689 D 293826 CDS YP_001318524.1 150388475 5310683 672097..673740 1 NC_009633.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: bth:BT_0125 NADH:ubiquinone oxidoreductase subunit; NADH dehydrogenase (quinone) 673740 5310683 Amet_0640 Alkaliphilus metalliredigens QYMF NADH dehydrogenase (quinone) YP_001318524.1 672097 D 293826 CDS YP_001318525.1 150388476 5310684 673832..675580 1 NC_009633.1 TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: pca:Pcar_1605 NADH:ubiquinone oxidoreductase subunit; hydrogenase, Fe-only 675580 5310684 Amet_0641 Alkaliphilus metalliredigens QYMF hydrogenase, Fe-only YP_001318525.1 673832 D 293826 CDS YP_001318526.1 150388477 5310685 complement(675692..677662) 1 NC_009633.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bha:BH2945 hypothetical protein; TRAP transporter, 4TM/12TM fusion protein 677662 5310685 Amet_0642 Alkaliphilus metalliredigens QYMF TRAP transporter, 4TM/12TM fusion protein YP_001318526.1 675692 R 293826 CDS YP_001318527.1 150388478 5310686 complement(677804..678793) 1 NC_009633.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bcl:ABC4041 TRAP-type transport system substrate-binding protein; TRAP transporter solute receptor TAXI family protein 678793 5310686 Amet_0643 Alkaliphilus metalliredigens QYMF TRAP transporter solute receptor TAXI family protein YP_001318527.1 677804 R 293826 CDS YP_001318528.1 150388479 5310687 complement(678831..679829) 1 NC_009633.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: cac:CAC0892 phospho-2-dehydro-3-deoxyheptonate aldolase; phospho-2-dehydro-3-deoxyheptonate aldolase 679829 5310687 Amet_0644 Alkaliphilus metalliredigens QYMF phospho-2-dehydro-3-deoxyheptonate aldolase YP_001318528.1 678831 R 293826 CDS YP_001318529.1 150388480 5310688 complement(679943..680149) 1 NC_009633.1 hypothetical protein 680149 5310688 Amet_0645 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318529.1 679943 R 293826 CDS YP_001318530.1 150388481 5310689 680423..681550 1 NC_009633.1 PFAM: amino acid-binding ACT domain protein; Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: mta:Moth_1333 prephenate dehydrogenase; prephenate dehydrogenase 681550 5310689 Amet_0646 Alkaliphilus metalliredigens QYMF prephenate dehydrogenase YP_001318530.1 680423 D 293826 CDS YP_001318531.1 150388482 5310690 681534..682811 1 NC_009633.1 TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: gme:Gmet_0864 3-phosphoshikimate 1-carboxyvinyltransferase; 3-phosphoshikimate 1-carboxyvinyltransferase 682811 5310690 Amet_0647 Alkaliphilus metalliredigens QYMF 3-phosphoshikimate 1-carboxyvinyltransferase YP_001318531.1 681534 D 293826 CDS YP_001318532.1 150388483 5310691 682844..683671 1 NC_009633.1 PFAM: prephenate dehydratase; KEGG: mtp:Mthe_0937 prephenate dehydratase; prephenate dehydratase 683671 5310691 Amet_0648 Alkaliphilus metalliredigens QYMF prephenate dehydratase YP_001318532.1 682844 D 293826 CDS YP_001318533.1 150388484 5310692 683684..684826 1 NC_009633.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 684826 5310692 Amet_0649 Alkaliphilus metalliredigens QYMF chorismate synthase YP_001318533.1 683684 D 293826 CDS YP_001318534.1 150388485 5310693 684802..685872 1 NC_009633.1 PFAM: 3-dehydroquinate synthase; KEGG: tte:TTE1011 3-dehydroquinate synthetase; 3-dehydroquinate synthase 685872 5310693 Amet_0650 Alkaliphilus metalliredigens QYMF 3-dehydroquinate synthase YP_001318534.1 684802 D 293826 CDS YP_001318535.1 150388486 5310694 685897..686706 1 NC_009633.1 TIGRFAM: chorismate mutase; PFAM: shikimate kinase; Chorismate mutase; KEGG: tte:TTE1275 Shikimate kinase; chorismate mutase 686706 5310694 Amet_0651 Alkaliphilus metalliredigens QYMF chorismate mutase YP_001318535.1 685897 D 293826 CDS YP_001318536.1 150388487 5310695 complement(686789..688171) 1 NC_009633.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: cth:Cthe_0178 argininosuccinate lyase; argininosuccinate lyase 688171 5310695 Amet_0652 Alkaliphilus metalliredigens QYMF argininosuccinate lyase YP_001318536.1 686789 R 293826 CDS YP_001318537.1 150388488 5310696 complement(688168..689412) 1 NC_009633.1 PFAM: argininosuccinate synthase; KEGG: dsy:DSY0785 hypothetical protein; argininosuccinate synthase 689412 5310696 Amet_0653 Alkaliphilus metalliredigens QYMF argininosuccinate synthase YP_001318537.1 688168 R 293826 CDS YP_001318538.1 150388489 5310697 complement(689618..690052) 1 NC_009633.1 PFAM: NLP/P60 protein; KEGG: sfr:Sfri_3992 NLP/P60 protein; NLP/P60 protein 690052 5310697 Amet_0654 Alkaliphilus metalliredigens QYMF NLP/P60 protein YP_001318538.1 689618 R 293826 CDS YP_001318539.1 150388490 5310698 690452..691942 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: chy:CHY_0091 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 691942 5310698 Amet_0655 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001318539.1 690452 D 293826 CDS YP_001318540.1 150388491 5310699 691914..692603 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC0321 response regulator (CheY-like domain, HTH domain); two component transcriptional regulator 692603 5310699 Amet_0656 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001318540.1 691914 D 293826 CDS YP_001318541.1 150388492 5310700 692669..693115 1 NC_009633.1 PFAM: CBS domain containing protein; KEGG: cno:NT01CX_0657 two CBS domain containing protein; hypothetical protein 693115 5310700 Amet_0657 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318541.1 692669 D 293826 CDS YP_001318542.1 150388493 5310701 693217..693516 1 NC_009633.1 hypothetical protein 693516 5310701 Amet_0658 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318542.1 693217 D 293826 CDS YP_001318543.1 150388494 5310702 693765..695090 1 NC_009633.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC01211 methyl-accepting chemotaxis protein TlpA; methyl-accepting chemotaxis sensory transducer 695090 5310702 Amet_0659 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001318543.1 693765 D 293826 CDS YP_001318544.1 150388495 5310703 695547..696770 1 NC_009633.1 TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: art:Arth_1762 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase 696770 5310703 Amet_0660 Alkaliphilus metalliredigens QYMF acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase YP_001318544.1 695547 D 293826 CDS YP_001318545.1 150388496 5310704 696795..698183 1 NC_009633.1 PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; short chain fatty acid transporter; KEGG: bld:BLi00322 YcgA; C4-dicarboxylate anaerobic carrier 698183 5310704 Amet_0661 Alkaliphilus metalliredigens QYMF C4-dicarboxylate anaerobic carrier YP_001318545.1 696795 D 293826 CDS YP_001318546.1 150388497 5310705 complement(698350..699360) 1 NC_009633.1 PFAM: Radical SAM domain protein; KEGG: bcz:BCZK3959 spore photoproduct lyase; radical SAM domain-containing protein 699360 5310705 Amet_0662 Alkaliphilus metalliredigens QYMF radical SAM domain-containing protein YP_001318546.1 698350 R 293826 CDS YP_001318547.1 150388498 5310706 699563..701326 1 NC_009633.1 TIGRFAM: PAS sensor protein; PFAM: CBS domain containing protein; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: bca:BCE_2865 sensory box sigma-54 dependent DNA-binding response regulator; sigma-54 dependent trancsriptional regulator 701326 5310706 Amet_0663 Alkaliphilus metalliredigens QYMF sigma-54 dependent trancsriptional regulator YP_001318547.1 699563 D 293826 CDS YP_001318548.1 150388499 5310707 701706..702881 1 NC_009633.1 PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: sat:SYN_01664 electron transport complex protein, NADH-binding subunit; respiratory-chain NADH dehydrogenase domain-containing protein 702881 5310707 Amet_0664 Alkaliphilus metalliredigens QYMF respiratory-chain NADH dehydrogenase domain-containing protein YP_001318548.1 701706 D 293826 CDS YP_001318549.1 150388500 5310708 703037..704926 1 NC_009633.1 KEGG: chy:CHY_2391 glycine reductase proprotein GrdE; D-proline reductase 704926 5310708 Amet_0665 Alkaliphilus metalliredigens QYMF D-proline reductase YP_001318549.1 703037 D 293826 CDS YP_001318550.1 150388501 5310709 704977..705237 1 NC_009633.1 hypothetical protein 705237 5310709 Amet_0666 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318550.1 704977 D 293826 CDS YP_001318551.1 150388502 5310710 705234..705689 1 NC_009633.1 KEGG: ade:Adeh_1149 hypothetical protein; D-proline reductase 705689 5310710 Amet_0667 Alkaliphilus metalliredigens QYMF D-proline reductase YP_001318551.1 705234 D 293826 CDS YP_001318552.1 150388503 5310711 705717..705962 1 NC_009633.1 hypothetical protein 705962 5310711 Amet_0668 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318552.1 705717 D 293826 CDS YP_001318553.1 150388504 5310712 706050..706814 1 NC_009633.1 D-proline reductase 706814 5310712 Amet_0669 Alkaliphilus metalliredigens QYMF D-proline reductase YP_001318553.1 706050 D 293826 CDS YP_001318554.1 150388505 5310713 706830..707294 1 NC_009633.1 D-proline reductase 707294 5310713 Amet_0670 Alkaliphilus metalliredigens QYMF D-proline reductase YP_001318554.1 706830 D 293826 CDS YP_001318555.1 150388506 5310714 707297..708301 1 NC_009633.1 PFAM: proline racemase; KEGG: tcr:506795.80 proline racemase Pfam: Pro_racemase; proline racemase 708301 5310714 Amet_0671 Alkaliphilus metalliredigens QYMF proline racemase YP_001318555.1 707297 D 293826 CDS YP_001318556.1 150388507 5310715 708355..709230 1 NC_009633.1 KEGG: ppr:PBPRA1095 hypothetical integral membrane protein; hypothetical protein 709230 5310715 Amet_0672 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318556.1 708355 D 293826 CDS YP_001318557.1 150388508 5310716 709723..710517 1 NC_009633.1 TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: tte:TTE1277 glutamate 5-kinase; glutamate 5-kinase 710517 5310716 Amet_0673 Alkaliphilus metalliredigens QYMF glutamate 5-kinase YP_001318557.1 709723 D 293826 CDS YP_001318558.1 150388509 5310717 710663..712375 1 NC_009633.1 TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: tte:TTE2319 prolyl-tRNA synthetase; prolyl-tRNA synthetase 712375 5310717 Amet_0674 Alkaliphilus metalliredigens QYMF prolyl-tRNA synthetase YP_001318558.1 710663 D 293826 CDS YP_001318559.1 150388510 5310718 complement(712525..713376) 1 NC_009633.1 PFAM: chemotaxis sensory transducer; KEGG: ctc:CTC00703 methyl-accepting chemotaxis-like protein; methyl-accepting chemotaxis sensory transducer 713376 5310718 Amet_0675 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001318559.1 712525 R 293826 CDS YP_001318560.1 150388511 5310719 713703..715310 1 NC_009633.1 PFAM: gamma-glutamyltranspeptidase; KEGG: oih:OB3267 gamma-glutamyltranspeptidase; gamma-glutamyltransferase 715310 5310719 Amet_0676 Alkaliphilus metalliredigens QYMF gamma-glutamyltransferase YP_001318560.1 713703 D 293826 CDS YP_001318561.1 150388512 5310720 715402..716298 1 NC_009633.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bld:BLi01170 YisK; 5-carboxymethyl-2-hydroxymuconate delta-isomerase 716298 5310720 Amet_0677 Alkaliphilus metalliredigens QYMF 5-carboxymethyl-2-hydroxymuconate delta-isomerase YP_001318561.1 715402 D 293826 CDS YP_001318562.1 150388513 5310721 716403..718634 1 NC_009633.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; MOFRL domain protein; KEGG: tma:TM1585 glycerate kinase, putative; D-isomer specific 2-hydroxyacid dehydrogenase 718634 5310721 Amet_0678 Alkaliphilus metalliredigens QYMF D-isomer specific 2-hydroxyacid dehydrogenase YP_001318562.1 716403 D 293826 CDS YP_001318563.1 150388514 5310722 718697..719932 1 NC_009633.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 719932 5310722 Amet_0679 Alkaliphilus metalliredigens QYMF putative oxidoreductase YP_001318563.1 718697 D 293826 CDS YP_001318564.1 150388515 5310723 720027..721031 1 NC_009633.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: btk:BT9727_3168 quinone oxidoreductase (NADPH:quinone reductase); alcohol dehydrogenase 721031 5310723 Amet_0680 Alkaliphilus metalliredigens QYMF alcohol dehydrogenase YP_001318564.1 720027 D 293826 CDS YP_001318565.1 150388516 5310724 721271..722125 1 NC_009633.1 PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: sme:SMb20130 putative dehydrogenase protein; FAD-binding molybdopterin dehydrogenase 722125 5310724 Amet_0681 Alkaliphilus metalliredigens QYMF FAD-binding molybdopterin dehydrogenase YP_001318565.1 721271 D 293826 CDS YP_001318566.1 150388517 5310725 722129..722608 1 NC_009633.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: chy:CHY_0691 2Fe-2S iron-sulfur cluster binding domain; 2Fe-2S iron-sulfur cluster binding domain-containing protein 722608 5310725 Amet_0682 Alkaliphilus metalliredigens QYMF 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001318566.1 722129 D 293826 CDS YP_001318567.1 150388518 5310726 722641..724956 1 NC_009633.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: nca:Noca_4271 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 724956 5310726 Amet_0683 Alkaliphilus metalliredigens QYMF molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001318567.1 722641 D 293826 CDS YP_001318568.1 150388519 5310727 725115..726356 1 NC_009633.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: sth:STH226 uracil permease; uracil-xanthine permease 726356 5310727 Amet_0684 Alkaliphilus metalliredigens QYMF uracil-xanthine permease YP_001318568.1 725115 D 293826 CDS YP_001318569.1 150388520 5310728 726658..727893 1 NC_009633.1 PFAM: purine catabolism PurC domain protein; KEGG: cac:CAC1426 possible transcriptional regulator from leucine-rich protein (LRPR) family; PucR family transcriptional regulator 727893 5310728 Amet_0685 Alkaliphilus metalliredigens QYMF PucR family transcriptional regulator YP_001318569.1 726658 D 293826 CDS YP_001318570.1 150388521 5310729 728076..729026 1 NC_009633.1 KEGG: efa:EF3009 hypothetical protein; hypothetical protein 729026 5310729 Amet_0686 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318570.1 728076 D 293826 CDS YP_001318571.1 150388522 5310730 729017..730594 1 NC_009633.1 PFAM: FdrA family protein; KEGG: ecp:ECP_0397 YahF/FdrA-like protein; FdrA family protein 730594 5310730 Amet_0687 Alkaliphilus metalliredigens QYMF FdrA family protein YP_001318571.1 729017 D 293826 CDS YP_001318572.1 150388523 5310731 730587..730757 1 NC_009633.1 KEGG: efa:EF3011 hypothetical protein; hypothetical protein 730757 5310731 Amet_0688 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318572.1 730587 D 293826 CDS YP_001318573.1 150388524 5310732 730808..732085 1 NC_009633.1 PFAM: protein of unknown function DUF1116; KEGG: mta:Moth_2121 protein of unknown function DUF1116; hypothetical protein 732085 5310732 Amet_0689 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318573.1 730808 D 293826 CDS YP_001318574.1 150388525 5310733 732111..732914 1 NC_009633.1 PFAM: cyclase family protein; KEGG: hwa:HQ1938A probable cyclase; cyclase family protein 732914 5310733 Amet_0690 Alkaliphilus metalliredigens QYMF cyclase family protein YP_001318574.1 732111 D 293826 CDS YP_001318575.1 150388526 5310734 732914..733804 1 NC_009633.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: spo:SPCC965.09 hypothetical protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 733804 5310734 Amet_0691 Alkaliphilus metalliredigens QYMF nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001318575.1 732914 D 293826 CDS YP_001318576.1 150388527 5310735 733839..735026 1 NC_009633.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ctc:CTC02087 putative bile acid-inducible operon protein F; formyl-CoA transferase 735026 5310735 Amet_0692 Alkaliphilus metalliredigens QYMF formyl-CoA transferase YP_001318576.1 733839 D 293826 CDS YP_001318577.1 150388528 5310736 735278..736663 1 NC_009633.1 KEGG: sth:STH2473 hypothetical protein; hypothetical protein 736663 5310736 Amet_0693 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318577.1 735278 D 293826 CDS YP_001318578.1 150388529 5310737 736956..738632 1 NC_009633.1 PFAM: Na+/H+ antiporter NhaC; KEGG: pab:PAB2161 hypothetical protein; Na+/H+ antiporter NhaC 738632 5310737 Amet_0694 Alkaliphilus metalliredigens QYMF Na+/H+ antiporter NhaC YP_001318578.1 736956 D 293826 CDS YP_001318579.1 150388530 5310738 complement(738739..739362) 1 NC_009633.1 hypothetical protein 739362 5310738 Amet_0695 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318579.1 738739 R 293826 CDS YP_001318580.1 150388531 5310739 complement(739574..741034) 1 NC_009633.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: dsy:DSY0247 hypothetical protein; anion transporter 741034 5310739 Amet_0696 Alkaliphilus metalliredigens QYMF anion transporter YP_001318580.1 739574 R 293826 CDS YP_001318581.1 150388532 5310740 741650..742975 1 NC_009633.1 TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: cac:CAC1427 4-aminobutyrate aminotransferase (PLP-dependent); 4-aminobutyrate aminotransferase 742975 5310740 Amet_0697 Alkaliphilus metalliredigens QYMF 4-aminobutyrate aminotransferase YP_001318581.1 741650 D 293826 CDS YP_001318582.1 150388533 5310741 743087..744514 1 NC_009633.1 PFAM: amino acid permease-associated region; KEGG: csa:Csal_1907 amino acid permease-associated region; amino acid permease-associated protein 744514 5310741 Amet_0698 Alkaliphilus metalliredigens QYMF amino acid permease-associated protein YP_001318582.1 743087 D 293826 CDS YP_001318583.1 150388534 5310742 744511..746202 1 NC_009633.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: sfu:Sfum_4079 aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase 746202 5310742 Amet_0699 Alkaliphilus metalliredigens QYMF aldehyde ferredoxin oxidoreductase YP_001318583.1 744511 D 293826 CDS YP_001318584.1 150388535 5310743 complement(746245..747987) 1 NC_009633.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: bcl:ABC0453 transcriptional regulator; sigma-54 dependent trancsriptional regulator 747987 5310743 Amet_0700 Alkaliphilus metalliredigens QYMF sigma-54 dependent trancsriptional regulator YP_001318584.1 746245 R 293826 CDS YP_001318585.1 150388536 5310744 748291..749037 1 NC_009633.1 PFAM: protein of unknown function DUF368; KEGG: tma:TM0164 hypothetical protein; hypothetical protein 749037 5310744 Amet_0701 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318585.1 748291 D 293826 CDS YP_001318586.1 150388537 5310745 749241..750362 1 NC_009633.1 PFAM: PfkB domain protein; KEGG: chy:CHY_0076 kinase, PfkB family; ribokinase-like domain-containing protein 750362 5310745 Amet_0702 Alkaliphilus metalliredigens QYMF ribokinase-like domain-containing protein YP_001318586.1 749241 D 293826 CDS YP_001318587.1 150388538 5310746 750374..751297 1 NC_009633.1 PFAM: Indigoidine synthase A family protein; KEGG: tte:TTE0327 uncharacterized enzyme involved in pigment biosynthesis; indigoidine synthase A family protein 751297 5310746 Amet_0703 Alkaliphilus metalliredigens QYMF indigoidine synthase A family protein YP_001318587.1 750374 D 293826 CDS YP_001318588.1 150388539 5310747 complement(751353..752972) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; KEGG: mta:Moth_1579 signal transduction histidine kinase regulating citrate/malate metabolism; signal transduction histidine kinase regulating citrate/malate metabolism 752972 5310747 Amet_0704 Alkaliphilus metalliredigens QYMF signal transduction histidine kinase regulating citrate/malate metabolism YP_001318588.1 751353 R 293826 CDS YP_001318589.1 150388540 5310748 753191..753586 1 NC_009633.1 PFAM: protein of unknown function DUF1292; KEGG: sth:STH1993 hypothetical protein; hypothetical protein 753586 5310748 Amet_0705 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318589.1 753191 D 293826 CDS YP_001318590.1 150388541 5310749 753750..754838 1 NC_009633.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cac:CAC0277 HD-GYP hydrolase domain containing protein; metal dependent phosphohydrolase 754838 5310749 Amet_0706 Alkaliphilus metalliredigens QYMF metal dependent phosphohydrolase YP_001318590.1 753750 D 293826 CDS YP_001318591.1 150388542 5310750 755065..756798 1 NC_009633.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cth:Cthe_1265 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/subunit 756798 5310750 Amet_0707 Alkaliphilus metalliredigens QYMF phosphoglucomutase/phosphomannomutase alpha/beta/subunit YP_001318591.1 755065 D 293826 CDS YP_001318592.1 150388543 5310751 756865..757587 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE0481 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; two component transcriptional regulator 757587 5310751 Amet_0708 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001318592.1 756865 D 293826 CDS YP_001318593.1 150388544 5310752 757595..759007 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE0482 sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 759007 5310752 Amet_0709 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001318593.1 757595 D 293826 CDS YP_001318594.1 150388545 5310753 759101..759661 1 NC_009633.1 KEGG: cth:Cthe_1229 spore germination protein-like protein; spore germination protein-like protein 759661 5310753 Amet_0710 Alkaliphilus metalliredigens QYMF spore germination protein-like protein YP_001318594.1 759101 D 293826 CDS YP_001318595.1 150388546 5310754 759879..760805 1 NC_009633.1 PFAM: Auxin Efflux Carrier; KEGG: mhu:Mhun_1778 auxin efflux carrier; auxin efflux carrier 760805 5310754 Amet_0711 Alkaliphilus metalliredigens QYMF auxin efflux carrier YP_001318595.1 759879 D 293826 CDS YP_001318596.1 150388547 5310755 760872..762101 1 NC_009633.1 PFAM: S-layer domain protein; Lytic transglycosylase, catalytic; KEGG: dsy:DSY3348 hypothetical protein; lytic transglycosylase catalytic subunit 762101 5310755 Amet_0712 Alkaliphilus metalliredigens QYMF lytic transglycosylase catalytic subunit YP_001318596.1 760872 D 293826 CDS YP_001318597.1 150388548 5310756 complement(762043..762576) 1 NC_009633.1 PFAM: protein of unknown function DUF1256; KEGG: cpr:CPR_2154 putative sporulation protein YyaC; hypothetical protein 762576 5310756 Amet_0713 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318597.1 762043 R 293826 CDS YP_001318598.1 150388549 5310757 complement(762649..762804) 1 NC_009633.1 hypothetical protein 762804 5310757 Amet_0714 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318598.1 762649 R 293826 CDS YP_001318599.1 150388550 5310758 763093..763560 1 NC_009633.1 PFAM: putative small multi-drug export; KEGG: bha:BH1234 small multidrug export related protein; putative small multi-drug export 763560 5310758 Amet_0715 Alkaliphilus metalliredigens QYMF putative small multi-drug export YP_001318599.1 763093 D 293826 CDS YP_001318600.1 150388551 5310759 763939..765123 1 NC_009633.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 765123 5310759 Amet_0716 Alkaliphilus metalliredigens QYMF S-adenosylmethionine synthetase YP_001318600.1 763939 D 293826 CDS YP_001318601.1 150388552 5310760 765332..765904 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; KEGG: swo:Swol_0517 sigma 28 (flagella/sporulation); ECF subfamily RNA polymerase sigma-24 factor 765904 5310760 Amet_0717 Alkaliphilus metalliredigens QYMF ECF subfamily RNA polymerase sigma-24 factor YP_001318601.1 765332 D 293826 CDS YP_001318602.1 150388553 5310761 766261..768309 1 NC_009633.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC0250 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 768309 5310761 Amet_0718 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001318602.1 766261 D 293826 CDS YP_001318603.1 150388554 5310762 768514..768735 1 NC_009633.1 hypothetical protein 768735 5310762 Amet_0719 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318603.1 768514 D 293826 CDS YP_001318604.1 150388555 5310763 768771..768989 1 NC_009633.1 hypothetical protein 768989 5310763 Amet_0720 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318604.1 768771 D 293826 CDS YP_001318605.1 150388556 5310764 769049..769213 1 NC_009633.1 KEGG: cno:NT01CX_0746 hypothetical protein; hypothetical protein 769213 5310764 Amet_0721 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318605.1 769049 D 293826 CDS YP_001318606.1 150388557 5310765 769231..771495 1 NC_009633.1 TIGRFAM: helicase, RecD/TraA family; SMART: Helix-hairpin-helix DNA-binding, class 1; AAA ATPase; KEGG: tte:TTE0489 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; recombinase D 771495 5310765 Amet_0722 Alkaliphilus metalliredigens QYMF recombinase D YP_001318606.1 769231 D 293826 CDS YP_001318607.1 150388558 5310766 771594..772322 1 NC_009633.1 PFAM: phosphoribosyltransferase; KEGG: swo:Swol_0188 phosphoribosyltransferase; phosphoribosyltransferase 772322 5310766 Amet_0723 Alkaliphilus metalliredigens QYMF phosphoribosyltransferase YP_001318607.1 771594 D 293826 CDS YP_001318608.1 150388559 5310767 772340..772753 1 NC_009633.1 KEGG: tte:TTE0491 flagellar protein; flagellar protein 772753 5310767 Amet_0724 Alkaliphilus metalliredigens QYMF flagellar protein YP_001318608.1 772340 D 293826 CDS YP_001318609.1 150388560 5310768 772827..773120 1 NC_009633.1 PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: swo:Swol_0190 putative anti-sigma-28 factor, FlgM; anti-sigma-28 factor, FlgM family protein 773120 5310768 Amet_0725 Alkaliphilus metalliredigens QYMF anti-sigma-28 factor, FlgM family protein YP_001318609.1 772827 D 293826 CDS YP_001318610.1 150388561 5310769 773152..773646 1 NC_009633.1 KEGG: cth:Cthe_2245 hypothetical protein; hypothetical protein 773646 5310769 Amet_0726 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318610.1 773152 D 293826 CDS YP_001318611.1 150388562 5310770 773663..775144 1 NC_009633.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: tte:TTE0494 Flagellar hook-associated protein; flagellar hook-associated protein FlgK 775144 5310770 Amet_0727 Alkaliphilus metalliredigens QYMF flagellar hook-associated protein FlgK YP_001318611.1 773663 D 293826 CDS YP_001318612.1 150388563 5310771 775190..776146 1 NC_009633.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: cth:Cthe_2242 flagellar hook-associated protein 3; flagellar hook-associated protein 3 776146 5310771 Amet_0728 Alkaliphilus metalliredigens QYMF flagellar hook-associated protein 3 YP_001318612.1 775190 D 293826 CDS YP_001318613.1 150388564 5310772 776187..776750 1 NC_009633.1 KEGG: cth:Cthe_2241 hypothetical protein; hypothetical protein 776750 5310772 Amet_0729 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318613.1 776187 D 293826 CDS YP_001318614.1 150388565 5310773 776959..777447 1 NC_009633.1 binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 777447 5310773 Amet_0730 Alkaliphilus metalliredigens QYMF flagellar assembly protein FliW YP_001318614.1 776959 D 293826 CDS YP_001318615.1 150388566 5310774 777447..777674 1 NC_009633.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 777674 5310774 Amet_0731 Alkaliphilus metalliredigens QYMF carbon storage regulator YP_001318615.1 777447 D 293826 CDS YP_001318616.1 150388567 5310775 777856..779055 1 NC_009633.1 PFAM: flagellin domain protein; KEGG: mta:Moth_0760 flagellin-like; flagellin domain-containing protein 779055 5310775 Amet_0732 Alkaliphilus metalliredigens QYMF flagellin domain-containing protein YP_001318616.1 777856 D 293826 CDS YP_001318617.1 150388568 5310776 779136..780905 1 NC_009633.1 PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: ctc:CTC01705 sulfatase-domain-containing protein; hypothetical protein 780905 5310776 Amet_0733 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318617.1 779136 D 293826 CDS YP_001318618.1 150388569 5310777 781056..781427 1 NC_009633.1 KEGG: swo:Swol_0231 hypothetical protein; hypothetical protein 781427 5310777 Amet_0734 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318618.1 781056 D 293826 CDS YP_001318619.1 150388570 5310778 781543..781671 1 NC_009633.1 hypothetical protein 781671 5310778 Amet_0735 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318619.1 781543 D 293826 CDS YP_001318620.1 150388571 5310779 781695..781928 1 NC_009633.1 hypothetical protein 781928 5310779 Amet_0736 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318620.1 781695 D 293826 CDS YP_001318621.1 150388572 5310780 782234..782653 1 NC_009633.1 KEGG: swo:Swol_0231 hypothetical protein; hypothetical protein 782653 5310780 Amet_0737 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318621.1 782234 D 293826 CDS YP_001318622.1 150388573 5310781 782650..782805 1 NC_009633.1 hypothetical protein 782805 5310781 Amet_0738 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318622.1 782650 D 293826 CDS YP_001318623.1 150388574 5310782 782991..783383 1 NC_009633.1 TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein, HI0074; KEGG: pca:Pcar_0898 hypothetical protein; nucleotidyltransferase substrate binding protein 783383 5310782 Amet_0739 Alkaliphilus metalliredigens QYMF nucleotidyltransferase substrate binding protein YP_001318623.1 782991 D 293826 CDS YP_001318624.1 150388575 5310783 783383..783694 1 NC_009633.1 PFAM: DNA polymerase, beta domain protein region; KEGG: csa:Csal_1674 DNA polymerase, beta-like region; DNA polymerase subunit beta 783694 5310783 Amet_0740 Alkaliphilus metalliredigens QYMF DNA polymerase subunit beta YP_001318624.1 783383 D 293826 CDS YP_001318625.1 150388576 5310784 784008..784184 1 NC_009633.1 KEGG: dsy:DSY0395 hypothetical protein; hypothetical protein 784184 5310784 Amet_0741 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318625.1 784008 D 293826 CDS YP_001318626.1 150388577 5310785 784208..784441 1 NC_009633.1 hypothetical protein 784441 5310785 Amet_0742 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318626.1 784208 D 293826 CDS YP_001318627.1 150388578 5310786 784597..785463 1 NC_009633.1 KEGG: dsy:DSY3487 hypothetical protein; hypothetical protein 785463 5310786 Amet_0743 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318627.1 784597 D 293826 CDS YP_001318628.1 150388579 5310787 785653..785850 1 NC_009633.1 KEGG: dsy:DSY0395 hypothetical protein; hypothetical protein 785850 5310787 Amet_0744 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318628.1 785653 D 293826 CDS YP_001318629.1 150388580 5310788 785874..786068 1 NC_009633.1 hypothetical protein 786068 5310788 Amet_0745 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318629.1 785874 D 293826 CDS YP_001318630.1 150388581 5310789 786167..786451 1 NC_009633.1 TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: swo:Swol_1972 prevent-host-death family protein; prevent-host-death family protein 786451 5310789 Amet_0746 Alkaliphilus metalliredigens QYMF prevent-host-death family protein YP_001318630.1 786167 D 293826 CDS YP_001318631.1 150388582 5310790 786444..786752 1 NC_009633.1 TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: swo:Swol_1971 hypothetical protein; addiction module antitoxin 786752 5310790 Amet_0747 Alkaliphilus metalliredigens QYMF addiction module antitoxin YP_001318631.1 786444 D 293826 CDS YP_001318632.1 150388583 5310791 786886..787650 1 NC_009633.1 PFAM: protein of unknown function DUF1568; KEGG: swo:Swol_2192 hypothetical protein; hypothetical protein 787650 5310791 Amet_0748 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318632.1 786886 D 293826 CDS YP_001318633.1 150388584 5310792 787760..788209 1 NC_009633.1 KEGG: mta:Moth_0505 hypothetical protein; hypothetical protein 788209 5310792 Amet_0749 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318633.1 787760 D 293826 CDS YP_001318634.1 150388585 5310793 788211..788642 1 NC_009633.1 PFAM: Rubrerythrin; Ferritin, Dps family protein; KEGG: mja:MJ0746 hypothetical protein; rubrerythrin 788642 5310793 Amet_0750 Alkaliphilus metalliredigens QYMF rubrerythrin YP_001318634.1 788211 D 293826 CDS YP_001318635.1 150388586 5310794 788786..789025 1 NC_009633.1 hypothetical protein 789025 5310794 Amet_0751 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318635.1 788786 D 293826 CDS YP_001318636.1 150388587 5310795 complement(789043..789672) 1 NC_009633.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cac:CAC0853 HD superfamily hydrolase (HD-GYP domain); metal dependent phosphohydrolase 789672 5310795 Amet_0752 Alkaliphilus metalliredigens QYMF metal dependent phosphohydrolase YP_001318636.1 789043 R 293826 CDS YP_001318637.1 150388588 5310796 789910..790278 1 NC_009633.1 PFAM: helix-turn-helix domain protein; KEGG: chy:CHY_1862 DNA-binding protein; XRE family transcriptional regulator 790278 5310796 Amet_0753 Alkaliphilus metalliredigens QYMF XRE family transcriptional regulator YP_001318637.1 789910 D 293826 CDS YP_001318638.1 150388589 5310797 791156..791350 1 NC_009633.1 hypothetical protein 791350 5310797 Amet_0754 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318638.1 791156 D 293826 CDS YP_001318639.1 150388590 5310798 791434..791805 1 NC_009633.1 PFAM: DNA polymerase, beta domain protein region; KEGG: swo:Swol_0499 nucleotidyltransferase domain protein; DNA polymerase subunit beta 791805 5310798 Amet_0755 Alkaliphilus metalliredigens QYMF DNA polymerase subunit beta YP_001318639.1 791434 D 293826 CDS YP_001318640.1 150388591 5310799 791756..792145 1 NC_009633.1 PFAM: HEPN domain protein; KEGG: swo:Swol_0500 protein if unknown function (DUF712) superfamily; HEPN domain-containing protein 792145 5310799 Amet_0756 Alkaliphilus metalliredigens QYMF HEPN domain-containing protein YP_001318640.1 791756 D 293826 CDS YP_001318641.1 150388592 5310800 792276..793607 1 NC_009633.1 PFAM: nucleoside recognition domain protein; KEGG: btk:BT9727_2860 conserved hypothetical protein, possible membrane protein; nucleoside recognition domain-containing protein 793607 5310800 Amet_0757 Alkaliphilus metalliredigens QYMF nucleoside recognition domain-containing protein YP_001318641.1 792276 D 293826 CDS YP_001318642.1 150388593 5310801 complement(793591..793920) 1 NC_009633.1 KEGG: cno:NT01CX_0025 transcription regulator (TetR/AcrR family); hypothetical protein 793920 5310801 Amet_0758 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318642.1 793591 R 293826 CDS YP_001318643.1 150388594 5310802 793987..795768 1 NC_009633.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC01488 fumarate reductase flavoprotein subunit; flavocytochrome c 795768 5310802 Amet_0759 Alkaliphilus metalliredigens QYMF flavocytochrome c YP_001318643.1 793987 D 293826 CDS YP_001318644.1 150388595 5310803 796016..796519 1 NC_009633.1 PFAM: nitroreductase; KEGG: mta:Moth_1212 nitroreductase; nitroreductase 796519 5310803 Amet_0760 Alkaliphilus metalliredigens QYMF nitroreductase YP_001318644.1 796016 D 293826 CDS YP_001318645.1 150388596 5310804 796717..797559 1 NC_009633.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cac:CAC1624 uncharacterized protein from DegV (B.subtilis) family; DegV family protein 797559 5310804 Amet_0761 Alkaliphilus metalliredigens QYMF DegV family protein YP_001318645.1 796717 D 293826 CDS YP_001318646.1 150388597 5310805 797756..798172 1 NC_009633.1 TIGRFAM: C_GCAxxG_C_C family protein; KEGG: cno:NT01CX_0304 hypothetical protein; C_GCAxxG_C_C family protein 798172 5310805 Amet_0762 Alkaliphilus metalliredigens QYMF C_GCAxxG_C_C family protein YP_001318646.1 797756 D 293826 CDS YP_001318647.1 150388598 5310806 complement(798250..799068) 1 NC_009633.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: cac:CAC2608 trancriptional regulator of AraC family; helix-turn-helix domain-containing protein 799068 5310806 Amet_0763 Alkaliphilus metalliredigens QYMF helix-turn-helix domain-containing protein YP_001318647.1 798250 R 293826 CDS YP_001318648.1 150388599 5310807 799243..800868 1 NC_009633.1 PFAM: FAD linked oxidase domain protein; KEGG: cno:NT01CX_1206 oxidoreductase, FAD-binding; D-lactate dehydrogenase 800868 5310807 Amet_0764 Alkaliphilus metalliredigens QYMF D-lactate dehydrogenase YP_001318648.1 799243 D 293826 CDS YP_001318649.1 150388600 5310808 800828..801607 1 NC_009633.1 PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; KEGG: cno:NT01CX_1205 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit alpha/beta-like protein 801607 5310808 Amet_0765 Alkaliphilus metalliredigens QYMF electron transfer flavoprotein subunit alpha/beta-like protein YP_001318649.1 800828 D 293826 CDS YP_001318650.1 150388601 5310809 801609..802787 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; KEGG: cno:NT01CX_1204 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha-like protein 802787 5310809 Amet_0766 Alkaliphilus metalliredigens QYMF electron transfer flavoprotein subunit alpha-like protein YP_001318650.1 801609 D 293826 CDS YP_001318651.1 150388602 5310810 802842..804074 1 NC_009633.1 PFAM: sodium/glutamate symporter; KEGG: fnu:FN0205 sodium/glutamate symport carrier protein; sodium/glutamate symporter 804074 5310810 Amet_0767 Alkaliphilus metalliredigens QYMF sodium/glutamate symporter YP_001318651.1 802842 D 293826 CDS YP_001318652.1 150388603 5310811 804292..804702 1 NC_009633.1 KEGG: cth:Cthe_2523 hypothetical protein; hypothetical protein 804702 5310811 Amet_0768 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318652.1 804292 D 293826 CDS YP_001318653.1 150388604 5310812 804781..805650 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: spn:SP_0590 acetyltransferase, GNAT family; N-acetyltransferase GCN5 805650 5310812 Amet_0769 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001318653.1 804781 D 293826 CDS YP_001318654.1 150388605 5310813 complement(805795..807003) 1 NC_009633.1 KEGG: cth:Cthe_0898 metal dependent phosphohydrolase; putative metal dependent phosphohydrolase 807003 5310813 Amet_0770 Alkaliphilus metalliredigens QYMF putative metal dependent phosphohydrolase YP_001318654.1 805795 R 293826 CDS YP_001318655.1 150388606 5310814 807327..808181 1 NC_009633.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; Metal-dependent hydrolase HDOD; KEGG: ctc:CTC01693 hypothetical protein; metal dependent phosphohydrolase 808181 5310814 Amet_0771 Alkaliphilus metalliredigens QYMF metal dependent phosphohydrolase YP_001318655.1 807327 D 293826 CDS YP_001318656.1 150388607 5310815 808362..809027 1 NC_009633.1 KEGG: tde:TDE0460 transporter, putative; hypothetical protein 809027 5310815 Amet_0772 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318656.1 808362 D 293826 CDS YP_001318657.1 150388608 5310816 809034..809159 1 NC_009633.1 hypothetical protein 809159 5310816 Amet_0773 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318657.1 809034 D 293826 CDS YP_001318658.1 150388609 5310817 809160..809726 1 NC_009633.1 KEGG: gsu:GSU1025 hypothetical protein; hypothetical protein 809726 5310817 Amet_0774 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318658.1 809160 D 293826 CDS YP_001318659.1 150388610 5310818 809830..810378 1 NC_009633.1 TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase, HXTX; KEGG: cth:Cthe_0503 2'-5' RNA ligase; 2'-5' RNA ligase 810378 5310818 Amet_0775 Alkaliphilus metalliredigens QYMF 2'-5' RNA ligase YP_001318659.1 809830 D 293826 CDS YP_001318660.1 150388611 5310819 complement(810417..810968) 1 NC_009633.1 PFAM: VanZ family protein; KEGG: swo:Swol_0743 hypothetical protein; VanZ family protein 810968 5310819 Amet_0776 Alkaliphilus metalliredigens QYMF VanZ family protein YP_001318660.1 810417 R 293826 CDS YP_001318661.1 150388612 5310820 complement(811024..812655) 1 NC_009633.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: cth:Cthe_0611 RNA-metabolising metallo-beta-lactamase; RNA-metabolising metallo-beta-lactamase 812655 5310820 Amet_0777 Alkaliphilus metalliredigens QYMF RNA-metabolising metallo-beta-lactamase YP_001318661.1 811024 R 293826 CDS YP_001318662.1 150388613 5310821 813031..813717 1 NC_009633.1 hypothetical protein 813717 5310821 Amet_0778 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318662.1 813031 D 293826 CDS YP_001318663.1 150388614 5310822 814146..815129 1 NC_009633.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bha:BH2947 immunogenic protein; TRAP transporter solute receptor TAXI family protein 815129 5310822 Amet_0779 Alkaliphilus metalliredigens QYMF TRAP transporter solute receptor TAXI family protein YP_001318663.1 814146 D 293826 CDS YP_001318664.1 150388615 5310823 815169..815654 1 NC_009633.1 PFAM: Domain of unknown function DUF1850; KEGG: bha:BH2946 hypothetical protein; hypothetical protein 815654 5310823 Amet_0780 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318664.1 815169 D 293826 CDS YP_001318665.1 150388616 5310824 815660..817606 1 NC_009633.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bha:BH2945 hypothetical protein; TRAP transporter, 4TM/12TM fusion protein 817606 5310824 Amet_0781 Alkaliphilus metalliredigens QYMF TRAP transporter, 4TM/12TM fusion protein YP_001318665.1 815660 D 293826 CDS YP_001318666.1 150388617 5310825 817840..818184 1 NC_009633.1 KEGG: swo:Swol_0189 flagellar protein; hypothetical protein 818184 5310825 Amet_0782 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318666.1 817840 D 293826 CDS YP_001318667.1 150388618 5310826 complement(818331..819197) 1 NC_009633.1 PFAM: aminotransferase, class IV; KEGG: cac:CAC2226 enzyme of IlvE/PabC family (branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase); class IV aminotransferase 819197 5310826 Amet_0783 Alkaliphilus metalliredigens QYMF class IV aminotransferase YP_001318667.1 818331 R 293826 CDS YP_001318668.1 150388619 5310827 819347..819778 1 NC_009633.1 PFAM: flagellar protein FlaG protein; KEGG: cth:Cthe_2219 flagellar protein FlaG protein; flagellar protein FlaG protein 819778 5310827 Amet_0784 Alkaliphilus metalliredigens QYMF flagellar protein FlaG protein YP_001318668.1 819347 D 293826 CDS YP_001318669.1 150388620 5310828 819838..821514 1 NC_009633.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: oih:OB2501 flagellar hook-associated protein 2; flagellar hook-associated 2 domain-containing protein 821514 5310828 Amet_0785 Alkaliphilus metalliredigens QYMF flagellar hook-associated 2 domain-containing protein YP_001318669.1 819838 D 293826 CDS YP_001318670.1 150388621 5310829 821542..821925 1 NC_009633.1 PFAM: flagellar protein FliS; KEGG: tte:TTE0506 Flagellar protein; flagellar protein FliS 821925 5310829 Amet_0786 Alkaliphilus metalliredigens QYMF flagellar protein FliS YP_001318670.1 821542 D 293826 CDS YP_001318671.1 150388622 5310830 821931..822419 1 NC_009633.1 KEGG: cth:Cthe_2216 hypothetical protein; hypothetical protein 822419 5310830 Amet_0787 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318671.1 821931 D 293826 CDS YP_001318672.1 150388623 5310831 823533..824066 1 NC_009633.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: ctc:CTC00325 SSU ribosomal protein S30P; sigma 54 modulation protein/ribosomal protein S30EA 824066 5310831 Amet_0788 Alkaliphilus metalliredigens QYMF sigma 54 modulation protein/ribosomal protein S30EA YP_001318672.1 823533 D 293826 CDS YP_001318673.1 150388624 5310832 824295..824906 1 NC_009633.1 KEGG: tte:TTE0519 hypothetical protein; hypothetical protein 824906 5310832 Amet_0789 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318673.1 824295 D 293826 CDS YP_001318674.1 150388625 5310833 825042..827717 1 NC_009633.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 827717 secA 5310833 secA Alkaliphilus metalliredigens QYMF preprotein translocase subunit SecA YP_001318674.1 825042 D 293826 CDS YP_001318675.1 150388626 5310834 827867..828856 1 NC_009633.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: tte:TTE0523 Protein chain release factor B; peptide chain release factor 2 828856 5310834 Amet_0791 Alkaliphilus metalliredigens QYMF peptide chain release factor 2 YP_001318675.1 827867 D 293826 CDS YP_001318676.1 150388627 5310835 complement(828951..829400) 1 NC_009633.1 PFAM: protein of unknown function DUF327; KEGG: tte:TTE0096 hypothetical protein; hypothetical protein 829400 5310835 Amet_0792 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318676.1 828951 R 293826 CDS YP_001318677.1 150388628 5310836 829579..832776 1 NC_009633.1 KEGG: ddi:DDBDRAFT_0188916 hypothetical protein; hypothetical protein 832776 5310836 Amet_0793 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318677.1 829579 D 293826 CDS YP_001318678.1 150388629 5310837 832788..833078 1 NC_009633.1 KEGG: cth:Cthe_0759 flagellar biosynthesis; flagellar biosynthesis protein 833078 5310837 Amet_0794 Alkaliphilus metalliredigens QYMF flagellar biosynthesis protein YP_001318678.1 832788 D 293826 CDS YP_001318679.1 150388630 5310838 833149..834027 1 NC_009633.1 PFAM: flagellin domain protein; KEGG: bha:BH3616 flagellin; flagellin domain-containing protein 834027 5310838 Amet_0795 Alkaliphilus metalliredigens QYMF flagellin domain-containing protein YP_001318679.1 833149 D 293826 CDS YP_001318680.1 150388631 5310839 834054..834533 1 NC_009633.1 KEGG: gme:Gmet_0445 flagellar protein FliS; flagellin-specific chaperone FliS-like protein 834533 5310839 Amet_0796 Alkaliphilus metalliredigens QYMF flagellin-specific chaperone FliS-like protein YP_001318680.1 834054 D 293826 CDS YP_001318681.1 150388632 5310840 834683..836578 1 NC_009633.1 PFAM: sulfatase; KEGG: tma:TM1703 hypothetical protein; sulfatase 836578 5310840 Amet_0797 Alkaliphilus metalliredigens QYMF sulfatase YP_001318681.1 834683 D 293826 CDS YP_001318682.1 150388633 5310841 836670..837371 1 NC_009633.1 KEGG: bld:BLi00261 hypothetical protein; hypothetical protein 837371 5310841 Amet_0798 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318682.1 836670 D 293826 CDS YP_001318683.1 150388634 5310842 837481..839667 1 NC_009633.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: cth:Cthe_1955 RNA binding S1; RNA-binding S1 domain-containing protein 839667 5310842 Amet_0799 Alkaliphilus metalliredigens QYMF RNA-binding S1 domain-containing protein YP_001318683.1 837481 D 293826 CDS YP_001318684.1 150388635 5310843 839718..841022 1 NC_009633.1 PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_3345 major facilitator superfamily MFS_1; major facilitator superfamily transporter 841022 5310843 Amet_0800 Alkaliphilus metalliredigens QYMF major facilitator superfamily transporter YP_001318684.1 839718 D 293826 CDS YP_001318685.1 150388636 5310844 841121..841615 1 NC_009633.1 KEGG: mta:Moth_0901 hypothetical protein; hypothetical protein 841615 5310844 Amet_0801 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318685.1 841121 D 293826 CDS YP_001318686.1 150388637 5310845 841973..842563 1 NC_009633.1 KEGG: tte:TTE0534 hypothetical protein; hypothetical protein 842563 5310845 Amet_0802 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318686.1 841973 D 293826 CDS YP_001318687.1 150388638 5310846 842933..843391 1 NC_009633.1 PFAM: protein of unknown function UPF0079; KEGG: dps:DP1956 hypothetical protein; hypothetical protein 843391 5310846 Amet_0803 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318687.1 842933 D 293826 CDS YP_001318688.1 150388639 5310847 843388..844098 1 NC_009633.1 PFAM: peptidase M22, glycoprotease; KEGG: cno:NT01CX_0503 glycoprotease family protein; peptidase M22, glycoprotease 844098 5310847 Amet_0804 Alkaliphilus metalliredigens QYMF peptidase M22, glycoprotease YP_001318688.1 843388 D 293826 CDS YP_001318689.1 150388640 5310848 844105..844551 1 NC_009633.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: tte:TTE0537 Acetyltransferases; ribosomal-protein-alanine acetyltransferase 844551 5310848 Amet_0805 Alkaliphilus metalliredigens QYMF ribosomal-protein-alanine acetyltransferase YP_001318689.1 844105 D 293826 CDS YP_001318690.1 150388641 5310849 844554..845204 1 NC_009633.1 KEGG: bth:BT_0860 putative ABC transporter ATP-binding protein; peptide ABC transporter ATPase 845204 5310849 Amet_0806 Alkaliphilus metalliredigens QYMF peptide ABC transporter ATPase YP_001318690.1 844554 D 293826 CDS YP_001318691.1 150388642 5310850 complement(845247..845426) 1 NC_009633.1 hypothetical protein 845426 5310850 Amet_0807 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318691.1 845247 R 293826 CDS YP_001318692.1 150388643 5310851 845868..846947 1 NC_009633.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 846947 5310851 Amet_0808 Alkaliphilus metalliredigens QYMF putative DNA-binding/iron metalloprotein/AP endonuclease YP_001318692.1 845868 D 293826 CDS YP_001318693.1 150388644 5310852 847334..847507 1 NC_009633.1 hypothetical protein 847507 5310852 Amet_0809 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318693.1 847334 D 293826 CDS YP_001318694.1 150388645 5310853 complement(847803..849725) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0476 ABC transporter, ATP-binding protein; ABC transporter-like protein 849725 5310853 Amet_0810 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001318694.1 847803 R 293826 CDS YP_001318695.1 150388646 5310854 850112..850756 1 NC_009633.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 850756 5310854 Amet_0811 Alkaliphilus metalliredigens QYMF redox-sensing transcriptional repressor Rex YP_001318695.1 850112 D 293826 CDS YP_001318696.1 150388647 5310855 850807..851274 1 NC_009633.1 PFAM: regulatory protein, MarR; KEGG: cpf:CPF_1323 transcriptional regulator, MarR family; MarR family transcriptional regulator 851274 5310855 Amet_0812 Alkaliphilus metalliredigens QYMF MarR family transcriptional regulator YP_001318696.1 850807 D 293826 CDS YP_001318697.1 150388648 5310856 complement(851316..851486) 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cth:Cthe_2103 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 851486 5310856 Amet_0813 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001318697.1 851316 R 293826 CDS YP_001318698.1 150388649 5310857 851712..852527 1 NC_009633.1 KEGG: cth:Cthe_2070 hypothetical protein; hypothetical protein 852527 5310857 Amet_0814 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318698.1 851712 D 293826 CDS YP_001318699.1 150388650 5310858 852782..854035 1 NC_009633.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: nme:NMB1476 glutamate dehydrogenase, NAD-specific; Glu/Leu/Phe/Val dehydrogenase 854035 5310858 Amet_0815 Alkaliphilus metalliredigens QYMF Glu/Leu/Phe/Val dehydrogenase YP_001318699.1 852782 D 293826 CDS YP_001318700.1 150388651 5310859 complement(854121..854318) 1 NC_009633.1 hypothetical protein 854318 5310859 Amet_0816 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318700.1 854121 R 293826 CDS YP_001318701.1 150388652 5310860 854940..856628 1 NC_009633.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: dvl:Dvul_0784 L-lactate transport; L-lactate transport 856628 5310860 Amet_0817 Alkaliphilus metalliredigens QYMF L-lactate transport YP_001318701.1 854940 D 293826 CDS YP_001318702.1 150388653 5310861 856775..857488 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: ctc:CTC00971 transcriptional regulator, putative pyruvate dehydrogenase complex repressor; GntR family transcriptional regulator 857488 5310861 Amet_0818 Alkaliphilus metalliredigens QYMF GntR family transcriptional regulator YP_001318702.1 856775 D 293826 CDS YP_001318703.1 150388654 5310862 857771..858559 1 NC_009633.1 PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; KEGG: cno:NT01CX_1610 electron-transferring flavoprotein small chain; electron transfer flavoprotein subunit alpha/beta-like protein 858559 5310862 Amet_0819 Alkaliphilus metalliredigens QYMF electron transfer flavoprotein subunit alpha/beta-like protein YP_001318703.1 857771 D 293826 CDS YP_001318704.1 150388655 5310863 858581..859807 1 NC_009633.1 PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; KEGG: ctc:CTC00974 electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein subunit alpha-like protein 859807 5310863 Amet_0820 Alkaliphilus metalliredigens QYMF electron transfer flavoprotein subunit alpha-like protein YP_001318704.1 858581 D 293826 CDS YP_001318705.1 150388656 5310864 859821..861215 1 NC_009633.1 PFAM: FAD linked oxidase domain protein; KEGG: cac:CAC2542 FAD/FMN-containing dehydrogenase; FAD linked oxidase domain-containing protein 861215 5310864 Amet_0821 Alkaliphilus metalliredigens QYMF FAD linked oxidase domain-containing protein YP_001318705.1 859821 D 293826 CDS YP_001318706.1 150388657 5310865 861378..861749 1 NC_009633.1 PFAM: protein of unknown function DUF77; KEGG: mta:Moth_2497 protein of unknown function DUF77; hypothetical protein 861749 5310865 Amet_0822 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318706.1 861378 D 293826 CDS YP_001318707.1 150388658 5310866 861896..862618 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0848 ABC-type multidrug transport system, ATPase component; ABC transporter-like protein 862618 5310866 Amet_0823 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001318707.1 861896 D 293826 CDS YP_001318708.1 150388659 5310867 862618..864300 1 NC_009633.1 KEGG: swo:Swol_2039 hypothetical protein; hypothetical protein 864300 5310867 Amet_0824 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318708.1 862618 D 293826 CDS YP_001318709.1 150388660 5310868 864615..865373 1 NC_009633.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: cac:CAC0231 transcripcional regulator of sugar metabolism; DeoR family transcriptional regulator 865373 5310868 Amet_0825 Alkaliphilus metalliredigens QYMF DeoR family transcriptional regulator YP_001318709.1 864615 D 293826 CDS YP_001318710.1 150388661 5310869 865396..866325 1 NC_009633.1 PFAM: PfkB domain protein; KEGG: cac:CAC0232 1-phosphofructokinase (fructoso 1-phosphate kinase); 1-phosphofructokinase 866325 5310869 Amet_0826 Alkaliphilus metalliredigens QYMF 1-phosphofructokinase YP_001318710.1 865396 D 293826 CDS YP_001318711.1 150388662 5310870 866331..866786 1 NC_009633.1 TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: cac:CAC0233 PTS system, IIA component; putative PTS IIA-like nitrogen-regulatory protein PtsN 866786 5310870 Amet_0827 Alkaliphilus metalliredigens QYMF putative PTS IIA-like nitrogen-regulatory protein PtsN YP_001318711.1 866331 D 293826 CDS YP_001318712.1 150388663 5310871 866896..868302 1 NC_009633.1 TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; KEGG: tte:TTE2585 phosphotransferase system, fructose-specific IIC component; PTS system fructose subfamily transporter subunit IIC 868302 5310871 Amet_0828 Alkaliphilus metalliredigens QYMF PTS system fructose subfamily transporter subunit IIC YP_001318712.1 866896 D 293826 CDS YP_001318713.1 150388664 5310872 868519..869862 1 NC_009633.1 PFAM: Propeptide, PepSY amd peptidase M4; peptidase 869862 5310872 Amet_0829 Alkaliphilus metalliredigens QYMF peptidase YP_001318713.1 868519 D 293826 CDS YP_001318714.1 150388665 5310873 869852..870373 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: btk:BT9727_2948 possible streptothricin acetyltransferase; N-acetyltransferase GCN5 870373 5310873 Amet_0830 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001318714.1 869852 D 293826 CDS YP_001318715.1 150388666 5310874 870401..871291 1 NC_009633.1 PFAM: HhH-GPD family protein; 8-oxoguanine DNA glycosylase domain protein; KEGG: cno:NT01CX_0465 8-oxoguanine-DNA-glycosylase, putative; 8-oxoguanine DNA glycosylase 871291 5310874 Amet_0831 Alkaliphilus metalliredigens QYMF 8-oxoguanine DNA glycosylase YP_001318715.1 870401 D 293826 CDS YP_001318716.1 150388667 5310875 871329..872045 1 NC_009633.1 PFAM: protein of unknown function DUF554; KEGG: tte:TTE0575 uncharacterized membrane protein, possible Na+ channel or pump; hypothetical protein 872045 5310875 Amet_0832 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318716.1 871329 D 293826 CDS YP_001318717.1 150388668 5310876 872333..872617 1 NC_009633.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 872617 groES 5310876 groES Alkaliphilus metalliredigens QYMF co-chaperonin GroES YP_001318717.1 872333 D 293826 CDS YP_001318718.1 150388669 5310877 872700..874343 1 NC_009633.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 874343 groEL 5310877 groEL Alkaliphilus metalliredigens QYMF chaperonin GroEL YP_001318718.1 872700 D 293826 CDS YP_001318719.1 150388670 5310878 complement(874445..875593) 1 NC_009633.1 PFAM: phage integrase family protein; KEGG: cth:Cthe_2455 phage integrase; phage integrase family protein 875593 5310878 Amet_0835 Alkaliphilus metalliredigens QYMF phage integrase family protein YP_001318719.1 874445 R 293826 CDS YP_001318720.1 150388671 5310879 complement(875598..875756) 1 NC_009633.1 hypothetical protein 875756 5310879 Amet_0836 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318720.1 875598 R 293826 CDS YP_001318721.1 150388672 5310880 complement(875815..876273) 1 NC_009633.1 PFAM: protein of unknown function DUF955; KEGG: ctc:CTC01069 GP23-like protein; hypothetical protein 876273 5310880 Amet_0837 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318721.1 875815 R 293826 CDS YP_001318722.1 150388673 5310881 complement(876294..876698) 1 NC_009633.1 PFAM: helix-turn-helix domain protein; KEGG: bce:BC3704 LexA repressor; helix-turn-helix domain-containing protein 876698 5310881 Amet_0838 Alkaliphilus metalliredigens QYMF helix-turn-helix domain-containing protein YP_001318722.1 876294 R 293826 CDS YP_001318723.1 150388674 5310882 876843..877055 1 NC_009633.1 KEGG: bce:BC3703 phage protein; phage protein 877055 5310882 Amet_0839 Alkaliphilus metalliredigens QYMF phage protein YP_001318723.1 876843 D 293826 CDS YP_001318724.1 150388675 5310883 877089..877334 1 NC_009633.1 hypothetical protein 877334 5310883 Amet_0840 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318724.1 877089 D 293826 CDS YP_001318725.1 150388676 5310884 877352..878182 1 NC_009633.1 PFAM: BRO domain protein; KEGG: ctc:CTC01071 KilA protein, putative phage-related DNA binding protein; prophage antirepressor 878182 5310884 Amet_0841 Alkaliphilus metalliredigens QYMF prophage antirepressor YP_001318725.1 877352 D 293826 CDS YP_001318726.1 150388677 5310885 878333..879253 1 NC_009633.1 KEGG: cno:NT01CX_2190 phage protein; phage protein 879253 5310885 Amet_0842 Alkaliphilus metalliredigens QYMF phage protein YP_001318726.1 878333 D 293826 CDS YP_001318727.1 150388678 5310886 879259..879513 1 NC_009633.1 hypothetical protein 879513 5310886 Amet_0843 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318727.1 879259 D 293826 CDS YP_001318728.1 150388679 5310887 880432..881706 1 NC_009633.1 hypothetical protein 881706 5310887 Amet_0844 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318728.1 880432 D 293826 CDS YP_001318729.1 150388680 5310888 881699..882223 1 NC_009633.1 hypothetical protein 882223 5310888 Amet_0845 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318729.1 881699 D 293826 CDS YP_001318730.1 150388681 5310889 882211..884166 1 NC_009633.1 KEGG: lwe:lwe1074 hypothetical protein; hypothetical protein 884166 5310889 Amet_0846 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318730.1 882211 D 293826 CDS YP_001318731.1 150388682 5310890 887144..890404 1 NC_009633.1 restriction endonuclease; the EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'; subunit R is required for both nuclease and ATPase activities; type I restriction enzyme EcoKI subunit R 890404 hsdR 5310890 hsdR Alkaliphilus metalliredigens QYMF type I restriction enzyme EcoKI subunit R YP_001318731.1 887144 D 293826 CDS YP_001318732.1 150388683 5310891 890404..891822 1 NC_009633.1 PFAM: N-6 DNA methylase; KEGG: bca:BCE_0841 type I restriction-modification system, M subunit; N-6 DNA methylase 891822 5310891 Amet_0848 Alkaliphilus metalliredigens QYMF N-6 DNA methylase YP_001318732.1 890404 D 293826 CDS YP_001318733.1 150388684 5310892 891822..893225 1 NC_009633.1 PFAM: restriction modification system DNA specificity domain; KEGG: bca:BCE_0842 type I restriction-modification enzyme, S subunit, putative; restriction modification system DNA specificity subunit 893225 5310892 Amet_0849 Alkaliphilus metalliredigens QYMF restriction modification system DNA specificity subunit YP_001318733.1 891822 D 293826 CDS YP_001318734.1 150388685 5310893 893222..894538 1 NC_009633.1 PFAM: SMC domain protein; KEGG: dvl:Dvul_0855 SMC domain protein; SMC domain-containing protein 894538 5310893 Amet_0850 Alkaliphilus metalliredigens QYMF SMC domain-containing protein YP_001318734.1 893222 D 293826 CDS YP_001318735.1 150388686 5310894 894544..895209 1 NC_009633.1 KEGG: bxe:Bxe_A3669 hypothetical protein; hypothetical protein 895209 5310894 Amet_0851 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318735.1 894544 D 293826 CDS YP_001318736.1 150388687 5310895 895536..896126 1 NC_009633.1 KEGG: det:DET1563 hypothetical protein; hypothetical protein 896126 5310895 Amet_0852 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318736.1 895536 D 293826 CDS YP_001318737.1 150388688 5310896 896832..897788 1 NC_009633.1 KEGG: mkm:Mkms_0838 conserved hypothetical protein; hypothetical protein 897788 5310896 Amet_0853 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318737.1 896832 D 293826 CDS YP_001318738.1 150388689 5310897 897868..898431 1 NC_009633.1 hypothetical protein 898431 5310897 Amet_0854 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318738.1 897868 D 293826 CDS YP_001318739.1 150388690 5310898 898810..899196 1 NC_009633.1 PFAM: helix-turn-helix domain protein; KEGG: cpf:CPF_1021 DNA-binding protein; helix-turn-helix domain-containing protein 899196 5310898 Amet_0855 Alkaliphilus metalliredigens QYMF helix-turn-helix domain-containing protein YP_001318739.1 898810 D 293826 CDS YP_001318740.1 150388691 5310899 899202..899993 1 NC_009633.1 PFAM: protein of unknown function DUF955; KEGG: swo:Swol_2003 Zn peptidase-like protein; hypothetical protein 899993 5310899 Amet_0856 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318740.1 899202 D 293826 CDS YP_001318741.1 150388692 5310900 899993..900565 1 NC_009633.1 hypothetical protein 900565 5310900 Amet_0857 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318741.1 899993 D 293826 CDS YP_001318742.1 150388693 5310901 complement(901085..901426) 1 NC_009633.1 hypothetical protein 901426 5310901 Amet_0858 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318742.1 901085 R 293826 CDS YP_001318743.1 150388694 5310902 complement(901429..901785) 1 NC_009633.1 hypothetical protein 901785 5310902 Amet_0859 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318743.1 901429 R 293826 CDS YP_001318744.1 150388695 5310903 complement(901919..902140) 1 NC_009633.1 KEGG: chy:CHY_0145 hypothetical protein; hypothetical protein 902140 5310903 Amet_0860 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318744.1 901919 R 293826 CDS YP_001318745.1 150388696 5310904 complement(902203..902427) 1 NC_009633.1 hypothetical protein 902427 5310904 Amet_0861 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318745.1 902203 R 293826 CDS YP_001318746.1 150388697 5310905 complement(902471..902806) 1 NC_009633.1 hypothetical protein 902806 5310905 Amet_0862 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318746.1 902471 R 293826 CDS YP_001318747.1 150388698 5310906 complement(902837..903196) 1 NC_009633.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: dde:Dde_1882 hypothetical protein; peptidase M15A 903196 5310906 Amet_0863 Alkaliphilus metalliredigens QYMF peptidase M15A YP_001318747.1 902837 R 293826 CDS YP_001318748.1 150388699 5310907 903351..903641 1 NC_009633.1 PFAM: LexA DNA-binding domain protein; KEGG: bld:BLi02032 transcriptional repressor of the SOS regulon; RBL05710; LexA family transcriptional regulator 903641 5310907 Amet_0864 Alkaliphilus metalliredigens QYMF LexA family transcriptional regulator YP_001318748.1 903351 D 293826 CDS YP_001318749.1 150388700 5310908 903858..904160 1 NC_009633.1 hypothetical protein 904160 5310908 Amet_0865 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318749.1 903858 D 293826 CDS YP_001318750.1 150388701 5310909 904516..904974 1 NC_009633.1 hypothetical protein 904974 5310909 Amet_0866 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318750.1 904516 D 293826 CDS YP_001318751.1 150388702 5310910 904985..906001 1 NC_009633.1 KEGG: swo:Swol_2426 hypothetical protein; hypothetical protein 906001 5310910 Amet_0867 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318751.1 904985 D 293826 CDS YP_001318752.1 150388703 5310911 908095..909129 1 NC_009633.1 hypothetical protein 909129 5310911 Amet_0868 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318752.1 908095 D 293826 CDS YP_001318753.1 150388704 5310912 909133..909567 1 NC_009633.1 TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: cac:CAC1425 dUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 909567 5310912 Amet_0869 Alkaliphilus metalliredigens QYMF deoxyuridine 5'-triphosphate nucleotidohydrolase Dut YP_001318753.1 909133 D 293826 CDS YP_001318754.1 150388705 5310913 910093..911631 1 NC_009633.1 PFAM: GerA spore germination protein; KEGG: tte:TTE2555 putative spore germination protein; GerA spore germination protein 911631 5310913 Amet_0870 Alkaliphilus metalliredigens QYMF GerA spore germination protein YP_001318754.1 910093 D 293826 CDS YP_001318755.1 150388706 5310914 911649..912755 1 NC_009633.1 TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: tte:TTE2554 spore germination protein homolog YndE; spore germination protein 912755 5310914 Amet_0871 Alkaliphilus metalliredigens QYMF spore germination protein YP_001318755.1 911649 D 293826 CDS YP_001318756.1 150388707 5310915 912739..913854 1 NC_009633.1 PFAM: spore germination B3 GerAC family protein; KEGG: bha:BH2186 hypothetical protein; spore germination B3 GerAC family protein 913854 5310915 Amet_0872 Alkaliphilus metalliredigens QYMF spore germination B3 GerAC family protein YP_001318756.1 912739 D 293826 CDS YP_001318757.1 150388708 5310919 916539..916931 1 NC_009633.1 hypothetical protein 916931 5310919 Amet_0876 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318757.1 916539 D 293826 CDS YP_001318758.1 150388709 5310920 916961..917350 1 NC_009633.1 hypothetical protein 917350 5310920 Amet_0877 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318758.1 916961 D 293826 CDS YP_001318759.1 150388710 5310921 917597..917731 1 NC_009633.1 hypothetical protein 917731 5310921 Amet_0878 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318759.1 917597 D 293826 CDS YP_001318760.1 150388711 5310922 918054..919010 1 NC_009633.1 KEGG: mkm:Mkms_0838 conserved hypothetical protein; hypothetical protein 919010 5310922 Amet_0879 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318760.1 918054 D 293826 CDS YP_001318761.1 150388712 5310923 919090..919650 1 NC_009633.1 hypothetical protein 919650 5310923 Amet_0880 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318761.1 919090 D 293826 CDS YP_001318762.1 150388713 5310924 complement(919970..920356) 1 NC_009633.1 hypothetical protein 920356 5310924 Amet_0881 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318762.1 919970 R 293826 CDS YP_001318763.1 150388714 5310925 920456..920740 1 NC_009633.1 hypothetical protein 920740 5310925 Amet_0882 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318763.1 920456 D 293826 CDS YP_001318764.1 150388715 5310926 920765..920977 1 NC_009633.1 hypothetical protein 920977 5310926 Amet_0883 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318764.1 920765 D 293826 CDS YP_001318765.1 150388716 5310927 921042..921206 1 NC_009633.1 hypothetical protein 921206 5310927 Amet_0884 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318765.1 921042 D 293826 CDS YP_001318766.1 150388717 5310928 921282..921386 1 NC_009633.1 hypothetical protein 921386 5310928 Amet_0885 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318766.1 921282 D 293826 CDS YP_001318767.1 150388718 5310929 complement(921836..922141) 1 NC_009633.1 PFAM: helix-turn-helix domain protein; KEGG: cpf:CPF_1604 DNA-binding protein; XRE family transcriptional regulator 922141 5310929 Amet_0886 Alkaliphilus metalliredigens QYMF XRE family transcriptional regulator YP_001318767.1 921836 R 293826 CDS YP_001318768.1 150388719 5310930 complement(922636..923241) 1 NC_009633.1 hypothetical protein 923241 5310930 Amet_0887 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318768.1 922636 R 293826 CDS YP_001318769.1 150388720 5310931 923688..924422 1 NC_009633.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bsu:BG13508 similar to transcriptional regulator (AraC/XylS family); helix-turn-helix domain-containing protein 924422 5310931 Amet_0888 Alkaliphilus metalliredigens QYMF helix-turn-helix domain-containing protein YP_001318769.1 923688 D 293826 CDS YP_001318770.1 150388721 5310932 924517..925422 1 NC_009633.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: bld:BLi00477 similar to proteins; RBL01685; hypothetical protein 925422 5310932 Amet_0889 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318770.1 924517 D 293826 CDS YP_001318771.1 150388722 5310933 925511..925840 1 NC_009633.1 TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: bcz:pE33L466_0260 protein secretion chaperonin; export-related chaperone CsaA 925840 5310933 Amet_0890 Alkaliphilus metalliredigens QYMF export-related chaperone CsaA YP_001318771.1 925511 D 293826 CDS YP_001318772.1 150388723 5310934 926663..927442 1 NC_009633.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: btl:BALH_3597 hydrolase, haloacid dehalogenase-like family; cof family hydrolase 927442 5310934 Amet_0891 Alkaliphilus metalliredigens QYMF cof family hydrolase YP_001318772.1 926663 D 293826 CDS YP_001318773.1 150388724 5310935 927783..928766 1 NC_009633.1 PFAM: PfkB domain protein; KEGG: gka:GK1957 2-keto-3-deoxy-gluconate kinase; ribokinase-like domain-containing protein 928766 5310935 Amet_0892 Alkaliphilus metalliredigens QYMF ribokinase-like domain-containing protein YP_001318773.1 927783 D 293826 CDS YP_001318774.1 150388725 5310936 928866..929261 1 NC_009633.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sus:Acid_1152 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 929261 5310936 Amet_0893 Alkaliphilus metalliredigens QYMF glyoxalase/bleomycin resistance protein/dioxygenase YP_001318774.1 928866 D 293826 CDS YP_001318775.1 150388726 5310937 929653..930768 1 NC_009633.1 PFAM: ABC transporter related; TOBE domain protein; transport-associated protein OB domain protein; SMART: AAA ATPase; KEGG: cno:NT01CX_0964 ABC transporter (TOBE domain and ATPase domain); ABC transporter-like protein 930768 5310937 Amet_0894 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001318775.1 929653 D 293826 CDS YP_001318776.1 150388727 5310938 930783..931853 1 NC_009633.1 PFAM: glycosyl hydrolase, family 88; KEGG: cac:CAC0359 similar to YteR (Bacilus subtilis); glycosyl hydrolase family protein 931853 5310938 Amet_0895 Alkaliphilus metalliredigens QYMF glycosyl hydrolase family protein YP_001318776.1 930783 D 293826 CDS YP_001318777.1 150388728 5310939 931973..933298 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 1; KEGG: yps:YPTB2362 putative ABC type periplasmic sugar-binding protein; extracellular solute-binding protein 933298 5310939 Amet_0896 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001318777.1 931973 D 293826 CDS YP_001318778.1 150388729 5310940 933351..934235 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2403 binding-protein-dependent transport system, inner membrane component; binding-protein-dependent transport system inner membrane protein 934235 5310940 Amet_0897 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001318778.1 933351 D 293826 CDS YP_001318779.1 150388730 5310941 934232..935164 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yps:YPTB2360 putative sugar ABC transporter (permease); binding-protein-dependent transport system inner membrane protein 935164 5310941 Amet_0898 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001318779.1 934232 D 293826 CDS YP_001318780.1 150388731 5310942 935170..936729 1 NC_009633.1 PFAM: glycoside hydrolase, family 28; KEGG: cac:CAC0355 putative polygalacturonase (pectinase); glycoside hydrolase 936729 5310942 Amet_0899 Alkaliphilus metalliredigens QYMF glycoside hydrolase YP_001318780.1 935170 D 293826 CDS YP_001318781.1 150388732 5310943 936755..937588 1 NC_009633.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 937588 5310943 Amet_0900 Alkaliphilus metalliredigens QYMF 5-keto-4-deoxyuronate isomerase YP_001318781.1 936755 D 293826 CDS YP_001318782.1 150388733 5310944 937685..938464 1 NC_009633.1 PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: cpr:CPR_0392 2-deoxy-D-gluconate 3-dehydrogenase; short-chain dehydrogenase/reductase SDR 938464 5310944 Amet_0901 Alkaliphilus metalliredigens QYMF short-chain dehydrogenase/reductase SDR YP_001318782.1 937685 D 293826 CDS YP_001318783.1 150388734 5310945 938593..939603 1 NC_009633.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cac:CAC0693 transcriptional regulator of the LacI family; alanine racemase 939603 5310945 Amet_0902 Alkaliphilus metalliredigens QYMF alanine racemase YP_001318783.1 938593 D 293826 CDS YP_001318784.1 150388735 5310947 940239..941483 1 NC_009633.1 KEGG: mta:Moth_0427 hypothetical protein; hypothetical protein 941483 5310947 Amet_0904 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318784.1 940239 D 293826 CDS YP_001318785.1 150388736 5310948 complement(941597..941881) 1 NC_009633.1 PFAM: Coat F domain protein; KEGG: cac:CAC2683 related to spore coat protein F; coat F domain-containing protein 941881 5310948 Amet_0905 Alkaliphilus metalliredigens QYMF coat F domain-containing protein YP_001318785.1 941597 R 293826 CDS YP_001318786.1 150388737 5310949 complement(941940..942179) 1 NC_009633.1 KEGG: cac:CAC2682 hypothetical protein; hypothetical protein 942179 5310949 Amet_0906 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318786.1 941940 R 293826 CDS YP_001318787.1 150388738 5310950 942674..943768 1 NC_009633.1 PFAM: aldo/keto reductase; KEGG: cth:Cthe_0236 aldo/keto reductase; aldo/keto reductase 943768 5310950 Amet_0907 Alkaliphilus metalliredigens QYMF aldo/keto reductase YP_001318787.1 942674 D 293826 CDS YP_001318788.1 150388739 5310951 943784..944182 1 NC_009633.1 KEGG: cth:Cthe_2252 thioesterase family protein; thioesterase family protein 944182 5310951 Amet_0908 Alkaliphilus metalliredigens QYMF thioesterase family protein YP_001318788.1 943784 D 293826 CDS YP_001318789.1 150388740 5310952 944538..945995 1 NC_009633.1 TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; KEGG: chy:CHY_1176 inosine-5'-monophosphate dehydrogenase; inosine-5'-monophosphate dehydrogenase 945995 5310952 Amet_0909 Alkaliphilus metalliredigens QYMF inosine-5'-monophosphate dehydrogenase YP_001318789.1 944538 D 293826 CDS YP_001318790.1 150388741 5310953 946012..947544 1 NC_009633.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 947544 guaA 5310953 guaA Alkaliphilus metalliredigens QYMF GMP synthase YP_001318790.1 946012 D 293826 CDS YP_001318791.1 150388742 5310954 947695..948114 1 NC_009633.1 hypothetical protein 948114 5310954 Amet_0911 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318791.1 947695 D 293826 CDS YP_001318792.1 150388743 5310955 948522..948968 1 NC_009633.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: tte:TTE2462 hypothetical protein; BFD/(2Fe-2S)-binding domain-containing protein 948968 5310955 Amet_0912 Alkaliphilus metalliredigens QYMF BFD/(2Fe-2S)-binding domain-containing protein YP_001318792.1 948522 D 293826 CDS YP_001318793.1 150388744 5310956 949254..950039 1 NC_009633.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: cac:CAC1317 potassium channel subunit; Ion transport 2 domain-containing protein 950039 5310956 Amet_0913 Alkaliphilus metalliredigens QYMF Ion transport 2 domain-containing protein YP_001318793.1 949254 D 293826 CDS YP_001318794.1 150388745 5310957 950152..950826 1 NC_009633.1 PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_3188 copper amine oxidase-like protein; copper amine oxidase domain-containing protein 950826 5310957 Amet_0914 Alkaliphilus metalliredigens QYMF copper amine oxidase domain-containing protein YP_001318794.1 950152 D 293826 CDS YP_001318795.1 150388746 5310959 952085..953260 1 NC_009633.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; KEGG: tma:TM0447 phosphoribosylaminoimidazole carboxylase ATPase subunit; phosphoribosylaminoimidazole carboxylase ATPase subunit 953260 5310959 Amet_0916 Alkaliphilus metalliredigens QYMF phosphoribosylaminoimidazole carboxylase ATPase subunit YP_001318795.1 952085 D 293826 CDS YP_001318796.1 150388747 5310960 953356..953868 1 NC_009633.1 TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: pab:PAB1077 phosphoribosylaminoimidazole carboxylase catalytic subunit; phosphoribosylaminoimidazole carboxylase catalytic subunit 953868 5310960 Amet_0917 Alkaliphilus metalliredigens QYMF phosphoribosylaminoimidazole carboxylase catalytic subunit YP_001318796.1 953356 D 293826 CDS YP_001318797.1 150388748 5310961 953881..954591 1 NC_009633.1 TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; KEGG: tte:TTE0588 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 954591 5310961 Amet_0918 Alkaliphilus metalliredigens QYMF phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_001318797.1 953881 D 293826 CDS YP_001318798.1 150388749 5310962 954605..954847 1 NC_009633.1 TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: bbk:BARBAKC583_0860 phosphoribosylformylglycinamidine synthase, PurS protein; phosphoribosylformylglycinamidine synthase subunit PurS 954847 5310962 Amet_0919 Alkaliphilus metalliredigens QYMF phosphoribosylformylglycinamidine synthase subunit PurS YP_001318798.1 954605 D 293826 CDS YP_001318799.1 150388750 5310963 954861..955541 1 NC_009633.1 TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: gka:GK0262 phosphoribosylformylglycinamidine synthase subunit I; phosphoribosylformylglycinamidine synthase I 955541 5310963 Amet_0920 Alkaliphilus metalliredigens QYMF phosphoribosylformylglycinamidine synthase I YP_001318799.1 954861 D 293826 CDS YP_001318800.1 150388751 5310964 955534..957750 1 NC_009633.1 TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: tte:TTE0811 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain; phosphoribosylformylglycinamidine synthase II 957750 5310964 Amet_0921 Alkaliphilus metalliredigens QYMF phosphoribosylformylglycinamidine synthase II YP_001318800.1 955534 D 293826 CDS YP_001318801.1 150388752 5310965 957720..959153 1 NC_009633.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase, class-II; phosphoribosyltransferase; KEGG: cno:NT01CX_2422 amidophosphoribosyltransferase; amidophosphoribosyltransferase 959153 5310965 Amet_0922 Alkaliphilus metalliredigens QYMF amidophosphoribosyltransferase YP_001318801.1 957720 D 293826 CDS YP_001318802.1 150388753 5310966 959140..960183 1 NC_009633.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 960183 5310966 Amet_0923 Alkaliphilus metalliredigens QYMF phosphoribosylaminoimidazole synthetase YP_001318802.1 959140 D 293826 CDS YP_001318803.1 150388754 5310967 960171..960827 1 NC_009633.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: cth:Cthe_1247 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 960827 5310967 Amet_0924 Alkaliphilus metalliredigens QYMF phosphoribosylglycinamide formyltransferase YP_001318803.1 960171 D 293826 CDS YP_001318804.1 150388755 5310968 960808..962334 1 NC_009633.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 962334 purH 5310968 purH Alkaliphilus metalliredigens QYMF bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_001318804.1 960808 D 293826 CDS YP_001318805.1 150388756 5310969 962428..963687 1 NC_009633.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 963687 5310969 Amet_0926 Alkaliphilus metalliredigens QYMF phosphoribosylamine--glycine ligase YP_001318805.1 962428 D 293826 CDS YP_001318806.1 150388757 5310970 complement(963737..964831) 1 NC_009633.1 KEGG: cac:CA_P0013 FAD dependent dehydrogenase; FAD dependent dehydrogenase 964831 5310970 Amet_0927 Alkaliphilus metalliredigens QYMF FAD dependent dehydrogenase YP_001318806.1 963737 R 293826 CDS YP_001318807.1 150388758 5310971 complement(964853..965086) 1 NC_009633.1 hypothetical protein 965086 5310971 Amet_0928 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318807.1 964853 R 293826 CDS YP_001318808.1 150388759 5310972 965394..966191 1 NC_009633.1 PFAM: chemotaxis sensory transducer; KEGG: tte:TTE0646 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 966191 5310972 Amet_0929 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001318808.1 965394 D 293826 CDS YP_001318809.1 150388760 5310973 complement(966401..967231) 1 NC_009633.1 PFAM: NLPA lipoprotein; KEGG: fnu:FN0658 ABC transporter substrate-binding protein; NLPA lipoprotein 967231 5310973 Amet_0930 Alkaliphilus metalliredigens QYMF NLPA lipoprotein YP_001318809.1 966401 R 293826 CDS YP_001318810.1 150388761 5310974 complement(967236..967886) 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A0996 ABC methionine transporter, inner membrane subunit; binding-protein-dependent transport system inner membrane protein 967886 5310974 Amet_0931 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001318810.1 967236 R 293826 CDS YP_001318811.1 150388762 5310975 complement(967886..968683) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfi:VF0686 methionine transport ATP-binding protein; ABC transporter-like protein 968683 5310975 Amet_0932 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001318811.1 967886 R 293826 CDS YP_001318812.1 150388763 5310976 968801..968971 1 NC_009633.1 hypothetical protein 968971 5310976 Amet_0933 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318812.1 968801 D 293826 CDS YP_001318813.1 150388764 5310977 969109..969414 1 NC_009633.1 TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor; KEGG: cth:Cthe_1388 TrpR like protein, YerC/YecD; TrpR-like protein YerC/YecD 969414 5310977 Amet_0934 Alkaliphilus metalliredigens QYMF TrpR-like protein YerC/YecD YP_001318813.1 969109 D 293826 CDS YP_001318814.1 150388765 5310978 complement(969515..970735) 1 NC_009633.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase I 970735 5310978 Amet_0935 Alkaliphilus metalliredigens QYMF aspartate kinase I YP_001318814.1 969515 R 293826 CDS YP_001318815.1 150388766 5310979 971017..971226 1 NC_009633.1 hypothetical protein 971226 5310979 Amet_0936 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318815.1 971017 D 293826 CDS YP_001318816.1 150388767 5310980 971338..971529 1 NC_009633.1 hypothetical protein 971529 5310980 Amet_0937 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318816.1 971338 D 293826 CDS YP_001318817.1 150388768 5310981 971895..974081 1 NC_009633.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: swo:Swol_2483 putative PAS/PAC sensor protein; diguanylate cyclase and metal dependent phosphohydrolase 974081 5310981 Amet_0938 Alkaliphilus metalliredigens QYMF diguanylate cyclase and metal dependent phosphohydrolase YP_001318817.1 971895 D 293826 CDS YP_001318818.1 150388769 5310982 974385..974558 1 NC_009633.1 hypothetical protein 974558 5310982 Amet_0939 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318818.1 974385 D 293826 CDS YP_001318819.1 150388770 5310983 974646..976682 1 NC_009633.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC0250 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 976682 5310983 Amet_0940 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001318819.1 974646 D 293826 CDS YP_001318820.1 150388771 5310984 976904..979078 1 NC_009633.1 TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: tte:TTE0604 Superfamily I DNA and RNA helicases; ATP-dependent DNA helicase PcrA 979078 5310984 Amet_0941 Alkaliphilus metalliredigens QYMF ATP-dependent DNA helicase PcrA YP_001318820.1 976904 D 293826 CDS YP_001318821.1 150388772 5310985 979239..981221 1 NC_009633.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 981221 ligA 5310985 ligA Alkaliphilus metalliredigens QYMF NAD-dependent DNA ligase LigA YP_001318821.1 979239 D 293826 CDS YP_001318822.1 150388773 5310986 complement(981462..981635) 1 NC_009633.1 hypothetical protein 981635 5310986 Amet_0943 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318822.1 981462 R 293826 CDS YP_001318823.1 150388774 5310987 981744..982424 1 NC_009633.1 TIGRFAM: integral membrane protein TIGR01906; PFAM: Integral membrane protein 1906; KEGG: tte:TTE1993 hypothetical protein; hypothetical protein 982424 5310987 Amet_0944 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318823.1 981744 D 293826 CDS YP_001318824.1 150388775 5310988 complement(982449..982862) 1 NC_009633.1 PFAM: Rubrerythrin; KEGG: cpe:CPE0855 rubrerythrin; rubrerythrin 982862 5310988 Amet_0945 Alkaliphilus metalliredigens QYMF rubrerythrin YP_001318824.1 982449 R 293826 CDS YP_001318825.1 150388776 5310989 983169..983384 1 NC_009633.1 PFAM: FeoA family protein; FeoA family protein 983384 5310989 Amet_0946 Alkaliphilus metalliredigens QYMF FeoA family protein YP_001318825.1 983169 D 293826 CDS YP_001318826.1 150388777 5310990 983385..985148 1 NC_009633.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: mtp:Mthe_0703 small GTP-binding protein; small GTP-binding protein 985148 5310990 Amet_0947 Alkaliphilus metalliredigens QYMF small GTP-binding protein YP_001318826.1 983385 D 293826 CDS YP_001318827.1 150388778 5310991 985174..985821 1 NC_009633.1 KEGG: hha:Hhal_1920 hypothetical protein; hypothetical protein 985821 5310991 Amet_0948 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318827.1 985174 D 293826 CDS YP_001318828.1 150388779 5310992 985784..986755 1 NC_009633.1 PFAM: conserved hypothetical protein 374; KEGG: mst:Msp_1503 conserved hypothetical membrane-spanning protein; hypothetical protein 986755 5310992 Amet_0949 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318828.1 985784 D 293826 CDS YP_001318829.1 150388780 5310993 986840..988225 1 NC_009633.1 KEGG: gka:GK0660 hypothetical protein; hypothetical protein 988225 5310993 Amet_0950 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318829.1 986840 D 293826 CDS YP_001318830.1 150388781 5310994 988562..989170 1 NC_009633.1 hypothetical protein 989170 5310994 Amet_0951 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318830.1 988562 D 293826 CDS YP_001318831.1 150388782 5310995 989199..990182 1 NC_009633.1 PFAM: AIR synthase related protein domain protein; KEGG: cth:Cthe_1060 AIR synthase related protein-like protein; AIR synthase-like protein 990182 5310995 Amet_0952 Alkaliphilus metalliredigens QYMF AIR synthase-like protein YP_001318831.1 989199 D 293826 CDS YP_001318832.1 150388783 5310996 990411..992570 1 NC_009633.1 PFAM: cell wall hydrolase/autolysin; copper amine oxidase domain protein; KEGG: cth:Cthe_0185 cell wall hydrolase/autolysin; N-acetylmuramoyl-L-alanine amidase 992570 5310996 Amet_0953 Alkaliphilus metalliredigens QYMF N-acetylmuramoyl-L-alanine amidase YP_001318832.1 990411 D 293826 CDS YP_001318833.1 150388784 5310997 992731..993252 1 NC_009633.1 KEGG: cth:Cthe_2213 hypothetical protein; hypothetical protein 993252 5310997 Amet_0954 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318833.1 992731 D 293826 CDS YP_001318834.1 150388785 5310998 993328..994326 1 NC_009633.1 KEGG: cth:Cthe_0187 hypothetical protein; hypothetical protein 994326 5310998 Amet_0955 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318834.1 993328 D 293826 CDS YP_001318835.1 150388786 5310999 994496..995263 1 NC_009633.1 TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; KEGG: tte:TTE0618 RNase PH; ribonuclease PH 995263 5310999 Amet_0956 Alkaliphilus metalliredigens QYMF ribonuclease PH YP_001318835.1 994496 D 293826 CDS YP_001318836.1 150388787 5311000 995287..995898 1 NC_009633.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: cth:Cthe_0189 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 995898 5311000 Amet_0957 Alkaliphilus metalliredigens QYMF RdgB/HAM1 family non-canonical purine NTP pyrophosphatase YP_001318836.1 995287 D 293826 CDS YP_001318837.1 150388788 5311001 995891..996373 1 NC_009633.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: swo:Swol_0455 hypothetical protein; phosphodiesterase 996373 5311001 Amet_0958 Alkaliphilus metalliredigens QYMF phosphodiesterase YP_001318837.1 995891 D 293826 CDS YP_001318838.1 150388789 5311011 998600..998851 1 NC_009633.1 hypothetical protein 998851 5311011 Amet_0961 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318838.1 998600 D 293826 CDS YP_001318839.1 150388790 5311012 998970..999194 1 NC_009633.1 hypothetical protein 999194 5311012 Amet_0962 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318839.1 998970 D 293826 CDS YP_001318840.1 150388791 5311013 1000939..1006785 1 NC_009633.1 PFAM: S-layer domain protein; GLUG domain protein; KEGG: swo:Swol_0141 hypothetical protein; S-layer protein 1006785 5311013 Amet_0963 Alkaliphilus metalliredigens QYMF S-layer protein YP_001318840.1 1000939 D 293826 CDS YP_001318841.1 150388792 5311015 1007267..1007668 1 NC_009633.1 PFAM: transposase IS200-family protein; KEGG: ctc:CTC00621 transposase; transposase IS200-family protein 1007668 5311015 Amet_0965 Alkaliphilus metalliredigens QYMF transposase IS200-family protein YP_001318841.1 1007267 D 293826 CDS YP_001318842.1 150388793 5311016 1007665..1008786 1 NC_009633.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bcz:pE33L466_0272 transposase; IS605 family transposase OrfB 1008786 5311016 Amet_0966 Alkaliphilus metalliredigens QYMF IS605 family transposase OrfB YP_001318842.1 1007665 D 293826 CDS YP_001318843.1 150388794 5311018 1009486..1012629 1 NC_009633.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; metal-dependent phosphohydrolase, HD sub domain; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; metal-dependent phosphohydrolase, HD region; KEGG: dsy:DSY1176 hypothetical protein; diguanylate cyclase and metal dependent phosphohydrolase 1012629 5311018 Amet_0967 Alkaliphilus metalliredigens QYMF diguanylate cyclase and metal dependent phosphohydrolase YP_001318843.1 1009486 D 293826 CDS YP_001318844.1 150388795 5311019 1012924..1013196 1 NC_009633.1 hypothetical protein 1013196 5311019 Amet_0968 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318844.1 1012924 D 293826 CDS YP_001318845.1 150388796 5311020 1013705..1014757 1 NC_009633.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: fnu:FN1258 C4-dicarboxylate-binding protein; TRAP dicarboxylate transporter subunit DctP 1014757 5311020 Amet_0969 Alkaliphilus metalliredigens QYMF TRAP dicarboxylate transporter subunit DctP YP_001318845.1 1013705 D 293826 CDS YP_001318846.1 150388797 5311021 1014901..1015389 1 NC_009633.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: fnu:FN1257 C4-dicarboxylate transporter small subunit; tripartite ATP-independent periplasmic transporter DctQ 1015389 5311021 Amet_0970 Alkaliphilus metalliredigens QYMF tripartite ATP-independent periplasmic transporter DctQ YP_001318846.1 1014901 D 293826 CDS YP_001318847.1 150388798 5311022 1015405..1016691 1 NC_009633.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: C4-dicarboxylate anaerobic carrier; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: fnu:FN1256 C4-dicarboxylate transporter large subunit; TRAP dicarboxylate transporter subunit DctM 1016691 5311022 Amet_0971 Alkaliphilus metalliredigens QYMF TRAP dicarboxylate transporter subunit DctM YP_001318847.1 1015405 D 293826 CDS YP_001318848.1 150388799 5311023 1016719..1017510 1 NC_009633.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: fnu:FN1255 nagD protein; HAD family hydrolase 1017510 5311023 Amet_0972 Alkaliphilus metalliredigens QYMF HAD family hydrolase YP_001318848.1 1016719 D 293826 CDS YP_001318849.1 150388800 5311024 1017685..1019115 1 NC_009633.1 PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: fnu:FN0183 glycerol-3-phosphate dehydrogenase; FAD dependent oxidoreductase 1019115 5311024 Amet_0973 Alkaliphilus metalliredigens QYMF FAD dependent oxidoreductase YP_001318849.1 1017685 D 293826 CDS YP_001318850.1 150388801 5311025 1019148..1020413 1 NC_009633.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: fnu:FN0182 sarcosine oxidase alpha subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1020413 5311025 Amet_0974 Alkaliphilus metalliredigens QYMF FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001318850.1 1019148 D 293826 CDS YP_001318851.1 150388802 5311026 1020416..1020829 1 NC_009633.1 PFAM: protein of unknown function DUF1667; KEGG: cac:CAC1324 uncharacterized predected metal-binding protein; hypothetical protein 1020829 5311026 Amet_0975 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318851.1 1020416 D 293826 CDS YP_001318852.1 150388803 5311027 1020869..1021576 1 NC_009633.1 PFAM: amino acid-binding ACT domain protein; MgtC/SapB transporter; KEGG: cth:Cthe_1919 MgtC/SapB transporter; MgtC/SapB transporter 1021576 5311027 Amet_0976 Alkaliphilus metalliredigens QYMF MgtC/SapB transporter YP_001318852.1 1020869 D 293826 CDS YP_001318853.1 150388804 5311028 complement(1021754..1023751) 1 NC_009633.1 PFAM: fructose-1,6-bisphosphatase; KEGG: cac:CAC1572 fructose-1,6-bisphosphatase; fructose-1,6-bisphosphatase 1023751 5311028 Amet_0977 Alkaliphilus metalliredigens QYMF fructose-1,6-bisphosphatase YP_001318853.1 1021754 R 293826 CDS YP_001318854.1 150388805 5311029 1024268..1024921 1 NC_009633.1 KEGG: swo:Swol_1999 hypothetical protein; hypothetical protein 1024921 5311029 Amet_0978 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318854.1 1024268 D 293826 CDS YP_001318855.1 150388806 5311030 complement(1024933..1025850) 1 NC_009633.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: dsy:DSY4221 hypothetical protein; LysR family transcriptional regulator 1025850 5311030 Amet_0979 Alkaliphilus metalliredigens QYMF LysR family transcriptional regulator YP_001318855.1 1024933 R 293826 CDS YP_001318856.1 150388807 5311031 1026294..1026497 1 NC_009633.1 KEGG: cth:Cthe_3092 conserved hypothetical protein, CF-27 family; hypothetical protein 1026497 5311031 Amet_0980 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318856.1 1026294 D 293826 CDS YP_001318857.1 150388808 5311032 1026674..1026991 1 NC_009633.1 PFAM: regulatory protein, ArsR; KEGG: lin:pli0036 similar to arsenical resistance operon repressor; regulatory protein ArsR 1026991 5311032 Amet_0981 Alkaliphilus metalliredigens QYMF regulatory protein ArsR YP_001318857.1 1026674 D 293826 CDS YP_001318858.1 150388809 5311033 1027153..1027332 1 NC_009633.1 hypothetical protein 1027332 5311033 Amet_0982 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318858.1 1027153 D 293826 CDS YP_001318859.1 150388810 5311034 1027357..1027758 1 NC_009633.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cth:Cthe_1110 protein tyrosine phosphatase; protein tyrosine phosphatase 1027758 5311034 Amet_0983 Alkaliphilus metalliredigens QYMF protein tyrosine phosphatase YP_001318859.1 1027357 D 293826 CDS YP_001318860.1 150388811 5311035 1027839..1028912 1 NC_009633.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: cth:Cthe_1111 bile acid:sodium symporter; arsenical-resistance protein 1028912 5311035 Amet_0984 Alkaliphilus metalliredigens QYMF arsenical-resistance protein YP_001318860.1 1027839 D 293826 CDS YP_001318861.1 150388812 5311036 1028953..1029252 1 NC_009633.1 PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: ser:SERP2427 arsenical resistance operon trans-acting repressor; arsenical resistance operon trans-acting repressor ArsD 1029252 5311036 Amet_0985 Alkaliphilus metalliredigens QYMF arsenical resistance operon trans-acting repressor ArsD YP_001318861.1 1028953 D 293826 CDS YP_001318862.1 150388813 5311037 1029265..1030152 1 NC_009633.1 TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; KEGG: hwa:HQ2609A probable arsenite efflux ATPase; arsenite-activated ATPase ArsA 1030152 5311037 Amet_0986 Alkaliphilus metalliredigens QYMF arsenite-activated ATPase ArsA YP_001318862.1 1029265 D 293826 CDS YP_001318863.1 150388814 5311038 1030145..1031035 1 NC_009633.1 TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; KEGG: hal:VNG7123 arsenite-transporting ATPase; arsenite-activated ATPase ArsA 1031035 5311038 Amet_0987 Alkaliphilus metalliredigens QYMF arsenite-activated ATPase ArsA YP_001318863.1 1030145 D 293826 CDS YP_001318864.1 150388815 5311039 1031114..1032190 1 NC_009633.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: chy:CHY_0790 tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein; radical SAM domain-containing protein 1032190 5311039 Amet_0988 Alkaliphilus metalliredigens QYMF radical SAM domain-containing protein YP_001318864.1 1031114 D 293826 CDS YP_001318865.1 150388816 5311040 1032362..1033078 1 NC_009633.1 KEGG: mta:Moth_2174 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A-like protein 1033078 5311040 Amet_0989 Alkaliphilus metalliredigens QYMF molybdopterin-guanine dinucleotide biosynthesis protein A-like protein YP_001318865.1 1032362 D 293826 CDS YP_001318866.1 150388817 5311041 1033445..1036006 1 NC_009633.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dsy:DSY4131 putative anaerobic dehydrogenase; molybdopterin oxidoreductase 1036006 5311041 Amet_0990 Alkaliphilus metalliredigens QYMF molybdopterin oxidoreductase YP_001318866.1 1033445 D 293826 CDS YP_001318867.1 150388818 5311042 1036033..1036713 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dsy:DSY4132 putative oxidoreductase iron-sulfur subunit; 4Fe-4S ferredoxin 1036713 5311042 Amet_0991 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001318867.1 1036033 D 293826 CDS YP_001318868.1 150388819 5311043 1036786..1037463 1 NC_009633.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: dsy:DSY4608 uncharacterized component of anaerobic dehydrogenase; cytoplasmic chaperone TorD family protein 1037463 5311043 Amet_0992 Alkaliphilus metalliredigens QYMF cytoplasmic chaperone TorD family protein YP_001318868.1 1036786 D 293826 CDS YP_001318869.1 150388820 5311044 1037527..1038609 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dsy:DSY0890 hypothetical protein; 4Fe-4S ferredoxin 1038609 5311044 Amet_0993 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001318869.1 1037527 D 293826 CDS YP_001318870.1 150388821 5311045 1038804..1039013 1 NC_009633.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 1039013 tatA 5311045 tatA Alkaliphilus metalliredigens QYMF twin arginine translocase protein A YP_001318870.1 1038804 D 293826 CDS YP_001318871.1 150388822 5311046 1039060..1040082 1 NC_009633.1 PFAM: molybdopterin binding domain; KEGG: chy:CHY_0621 molybdopterin-binding domain protein; molybdopterin binding domain-containing protein 1040082 5311046 Amet_0995 Alkaliphilus metalliredigens QYMF molybdopterin binding domain-containing protein YP_001318871.1 1039060 D 293826 CDS YP_001318872.1 150388823 5311047 1040094..1041329 1 NC_009633.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: bha:BH3021 molybdopterin biosynthesis; molybdenum cofactor synthesis domain-containing protein 1041329 5311047 Amet_0996 Alkaliphilus metalliredigens QYMF molybdenum cofactor synthesis domain-containing protein YP_001318872.1 1040094 D 293826 CDS YP_001318873.1 150388824 5311048 1041326..1041817 1 NC_009633.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: mta:Moth_1819 molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein MobB 1041817 5311048 Amet_0997 Alkaliphilus metalliredigens QYMF molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_001318873.1 1041326 D 293826 CDS YP_001318874.1 150388825 5311049 1041874..1042044 1 NC_009633.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: chy:CHY_2570 twin-arginine translocation protein, TatA/E family; twin arginine-targeting protein translocase 1042044 5311049 Amet_0998 Alkaliphilus metalliredigens QYMF twin arginine-targeting protein translocase YP_001318874.1 1041874 D 293826 CDS YP_001318875.1 150388826 5311050 1042109..1042828 1 NC_009633.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: sfu:Sfum_0692 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase subunit TatC 1042828 5311050 Amet_0999 Alkaliphilus metalliredigens QYMF Sec-independent protein translocase subunit TatC YP_001318875.1 1042109 D 293826 CDS YP_001318876.1 150388827 5311051 1042896..1043681 1 NC_009633.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 1043681 5311051 Amet_1000 Alkaliphilus metalliredigens QYMF formate dehydrogenase accessory protein YP_001318876.1 1042896 D 293826 CDS YP_001318877.1 150388828 5311052 complement(1043835..1045943) 1 NC_009633.1 PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: tte:TTE1387 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); polynucleotide phosphorylase/polyadenylase 1045943 5311052 Amet_1001 Alkaliphilus metalliredigens QYMF polynucleotide phosphorylase/polyadenylase YP_001318877.1 1043835 R 293826 CDS YP_001318878.1 150388829 5311053 complement(1046348..1046956) 1 NC_009633.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bha:BH0418 unknown conserved protein in others; type 12 methyltransferase 1046956 5311053 Amet_1002 Alkaliphilus metalliredigens QYMF type 12 methyltransferase YP_001318878.1 1046348 R 293826 CDS YP_001318879.1 150388830 5311054 1047254..1047454 1 NC_009633.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: vvy:VV2209 hypothetical protein; DNA binding domain-containing protein 1047454 5311054 Amet_1003 Alkaliphilus metalliredigens QYMF DNA binding domain-containing protein YP_001318879.1 1047254 D 293826 CDS YP_001318880.1 150388831 5311055 1047625..1049934 1 NC_009633.1 KEGG: cac:CAC1026 superfamily I DNA helicase; superfamily I DNA helicase 1049934 5311055 Amet_1004 Alkaliphilus metalliredigens QYMF superfamily I DNA helicase YP_001318880.1 1047625 D 293826 CDS YP_001318881.1 150388832 5311056 1050489..1050734 1 NC_009633.1 hypothetical protein 1050734 5311056 Amet_1005 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318881.1 1050489 D 293826 CDS YP_001318882.1 150388833 5311057 complement(1050883..1052991) 1 NC_009633.1 PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: tte:TTE1387 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); polynucleotide phosphorylase/polyadenylase 1052991 5311057 Amet_1006 Alkaliphilus metalliredigens QYMF polynucleotide phosphorylase/polyadenylase YP_001318882.1 1050883 R 293826 CDS YP_001318883.1 150388834 5311058 1053422..1053937 1 NC_009633.1 PFAM: NUDIX hydrolase; KEGG: psb:Psyr_2666 NUDIX hydrolase; NUDIX hydrolase 1053937 5311058 Amet_1007 Alkaliphilus metalliredigens QYMF NUDIX hydrolase YP_001318883.1 1053422 D 293826 CDS YP_001318884.1 150388835 5311059 1054341..1054541 1 NC_009633.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: she:Shewmr4_2780 phage transcriptional regulator, AlpA; DNA binding domain-containing protein 1054541 5311059 Amet_1008 Alkaliphilus metalliredigens QYMF DNA binding domain-containing protein YP_001318884.1 1054341 D 293826 CDS YP_001318885.1 150388836 5311060 1054646..1055953 1 NC_009633.1 PFAM: major facilitator superfamily MFS_1; KEGG: rba:RB3032 hypothetical protein; major facilitator superfamily transporter 1055953 5311060 Amet_1009 Alkaliphilus metalliredigens QYMF major facilitator superfamily transporter YP_001318885.1 1054646 D 293826 CDS YP_001318886.1 150388837 5311061 1056192..1057808 1 NC_009633.1 PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pha:PSHAa1403 sulfate permease protein; sulfate transporter 1057808 5311061 Amet_1010 Alkaliphilus metalliredigens QYMF sulfate transporter YP_001318886.1 1056192 D 293826 CDS YP_001318887.1 150388838 5311062 1058269..1058514 1 NC_009633.1 hypothetical protein 1058514 5311062 Amet_1011 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318887.1 1058269 D 293826 CDS YP_001318888.1 150388839 5311063 1058843..1060594 1 NC_009633.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: cpf:CPF_1523 sensory box histidine kinase; PAS/PAC sensor signal transduction histidine kinase 1060594 5311063 Amet_1012 Alkaliphilus metalliredigens QYMF PAS/PAC sensor signal transduction histidine kinase YP_001318888.1 1058843 D 293826 CDS YP_001318889.1 150388840 5311064 1060946..1062574 1 NC_009633.1 PFAM: response regulator receiver; ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: pin:Ping_3329 hybrid sensor and regulator fused; histidine kinase 1062574 5311064 Amet_1013 Alkaliphilus metalliredigens QYMF histidine kinase YP_001318889.1 1060946 D 293826 CDS YP_001318890.1 150388841 5311065 complement(1062591..1063286) 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_1394 two component transcriptional regulator, winged helix family; two component transcriptional regulator 1063286 5311065 Amet_1014 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001318890.1 1062591 R 293826 CDS YP_001318891.1 150388842 5311066 1063609..1063785 1 NC_009633.1 hypothetical protein 1063785 5311066 Amet_1015 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318891.1 1063609 D 293826 CDS YP_001318892.1 150388843 5311067 1064040..1064465 1 NC_009633.1 PFAM: nucleoside recognition domain protein; KEGG: bcl:ABC3053 hypothetical protein; nucleoside recognition domain-containing protein 1064465 5311067 Amet_1016 Alkaliphilus metalliredigens QYMF nucleoside recognition domain-containing protein YP_001318892.1 1064040 D 293826 CDS YP_001318893.1 150388844 5311068 1064465..1064941 1 NC_009633.1 PFAM: nucleoside recognition domain protein; KEGG: rxy:Rxyl_0326 nucleoside recognition; nucleoside recognition domain-containing protein 1064941 5311068 Amet_1017 Alkaliphilus metalliredigens QYMF nucleoside recognition domain-containing protein YP_001318893.1 1064465 D 293826 CDS YP_001318894.1 150388845 5311069 1065408..1066508 1 NC_009633.1 TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: cno:NT01CX_0715 riboflavin biosynthesis protein RibD; riboflavin biosynthesis protein RibD 1066508 5311069 Amet_1018 Alkaliphilus metalliredigens QYMF riboflavin biosynthesis protein RibD YP_001318894.1 1065408 D 293826 CDS YP_001318895.1 150388846 5311070 1066513..1067169 1 NC_009633.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1067169 5311070 Amet_1019 Alkaliphilus metalliredigens QYMF riboflavin synthase subunit alpha YP_001318895.1 1066513 D 293826 CDS YP_001318896.1 150388847 5311071 1067255..1068466 1 NC_009633.1 PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: cno:NT01CX_0713 riboflavin biosynthesis protein RibA; GTP cyclohydrolase II 1068466 5311071 Amet_1020 Alkaliphilus metalliredigens QYMF GTP cyclohydrolase II YP_001318896.1 1067255 D 293826 CDS YP_001318897.1 150388848 5311072 1068468..1068929 1 NC_009633.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1068929 ribH 5311072 ribH Alkaliphilus metalliredigens QYMF 6,7-dimethyl-8-ribityllumazine synthase YP_001318897.1 1068468 D 293826 CDS YP_001318898.1 150388849 5311073 1069430..1070293 1 NC_009633.1 KEGG: mes:Meso_2435 extracellular solute-binding protein, family 1; extracellular solute-binding protein 1070293 5311073 Amet_1022 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001318898.1 1069430 D 293826 CDS YP_001318899.1 150388850 5311074 1070308..1071000 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: swo:Swol_1632 sulfate/tungstate uptake family ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1071000 5311074 Amet_1023 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001318899.1 1070308 D 293826 CDS YP_001318900.1 150388851 5311075 1071000..1071707 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_1631 tungsten transporter, ATP binding protein; ABC transporter-like protein 1071707 5311075 Amet_1024 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001318900.1 1071000 D 293826 CDS YP_001318901.1 150388852 5311076 1071799..1072005 1 NC_009633.1 hypothetical protein 1072005 5311076 Amet_1025 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318901.1 1071799 D 293826 CDS YP_001318902.1 150388853 5311077 1072128..1072547 1 NC_009633.1 PFAM: CBS domain containing protein; KEGG: cno:NT01CX_0657 two CBS domain containing protein; hypothetical protein 1072547 5311077 Amet_1026 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318902.1 1072128 D 293826 CDS YP_001318903.1 150388854 5311078 1072671..1072811 1 NC_009633.1 hypothetical protein 1072811 5311078 Amet_1027 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318903.1 1072671 D 293826 CDS YP_001318904.1 150388855 5311079 1072859..1073206 1 NC_009633.1 KEGG: tte:TTE1897 hypothetical protein; hypothetical protein 1073206 5311079 Amet_1028 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318904.1 1072859 D 293826 CDS YP_001318905.1 150388856 5311080 1073394..1074332 1 NC_009633.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: oih:OB2530 attenuator for lytABC and LytR expression; cell envelope-related transcriptional attenuator 1074332 5311080 Amet_1029 Alkaliphilus metalliredigens QYMF cell envelope-related transcriptional attenuator YP_001318905.1 1073394 D 293826 CDS YP_001318906.1 150388857 5311081 1074544..1076268 1 NC_009633.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: cth:Cthe_0083 serine phosphatase; stage II sporulation E family protein 1076268 5311081 Amet_1030 Alkaliphilus metalliredigens QYMF stage II sporulation E family protein YP_001318906.1 1074544 D 293826 CDS YP_001318907.1 150388858 5311082 1076402..1076779 1 NC_009633.1 KEGG: cac:CAC0803 hypothetical protein; hypothetical protein 1076779 5311082 Amet_1031 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318907.1 1076402 D 293826 CDS YP_001318908.1 150388859 5311083 1077254..1079461 1 NC_009633.1 TIGRFAM: ABC-type bacteriocin transporter; PFAM: ABC transporter, transmembrane region; ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase; KEGG: cpr:CPR_1082 bacteriocin ABC transporter, ATP-binding/permease protein, putative; bacteriocin ABC transporter 1079461 5311083 Amet_1032 Alkaliphilus metalliredigens QYMF bacteriocin ABC transporter YP_001318908.1 1077254 D 293826 CDS YP_001318909.1 150388860 5311084 1079458..1080933 1 NC_009633.1 PFAM: secretion protein HlyD family protein; KEGG: cpr:CPR_1083 bacteriocin ABC transporter, bacteriocin-binding protein, putative; secretion protein HlyD family protein 1080933 5311084 Amet_1033 Alkaliphilus metalliredigens QYMF secretion protein HlyD family protein YP_001318909.1 1079458 D 293826 CDS YP_001318910.1 150388861 5311085 1081229..1081507 1 NC_009633.1 hypothetical protein 1081507 5311085 Amet_1034 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318910.1 1081229 D 293826 CDS YP_001318911.1 150388862 5311086 1082768..1083592 1 NC_009633.1 PFAM: Abortive infection protein; KEGG: tte:TTE2577 predicted metal-dependent membrane protease; abortive infection protein 1083592 5311086 Amet_1035 Alkaliphilus metalliredigens QYMF abortive infection protein YP_001318911.1 1082768 D 293826 CDS YP_001318912.1 150388863 5311087 1084048..1084917 1 NC_009633.1 PFAM: Abortive infection protein; KEGG: cth:Cthe_2176 abortive infection protein; abortive infection protein 1084917 5311087 Amet_1036 Alkaliphilus metalliredigens QYMF abortive infection protein YP_001318912.1 1084048 D 293826 CDS YP_001318913.1 150388864 5311089 1085725..1085967 1 NC_009633.1 hypothetical protein 1085967 5311089 Amet_1038 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318913.1 1085725 D 293826 CDS YP_001318914.1 150388865 5311090 1086319..1087860 1 NC_009633.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; Tetratricopeptide domain protein; KEGG: cth:Cthe_0533 radical SAM; radical SAM domain-containing protein 1087860 5311090 Amet_1039 Alkaliphilus metalliredigens QYMF radical SAM domain-containing protein YP_001318914.1 1086319 D 293826 CDS YP_001318915.1 150388866 5311091 1087959..1088324 1 NC_009633.1 PFAM: regulatory protein, LuxR; KEGG: rme:Rmet_2534 ATP-dependent transcriptional regulator, MalT-like, LuxR family; regulatory protein LuxR 1088324 5311091 Amet_1040 Alkaliphilus metalliredigens QYMF regulatory protein LuxR YP_001318915.1 1087959 D 293826 CDS YP_001318916.1 150388867 5311092 1088662..1088859 1 NC_009633.1 hypothetical protein 1088859 5311092 Amet_1041 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318916.1 1088662 D 293826 CDS YP_001318917.1 150388868 5311093 1088951..1089766 1 NC_009633.1 PFAM: Abortive infection protein; KEGG: cth:Cthe_2176 abortive infection protein; abortive infection protein 1089766 5311093 Amet_1042 Alkaliphilus metalliredigens QYMF abortive infection protein YP_001318917.1 1088951 D 293826 CDS YP_001318918.1 150388869 5311095 complement(1090104..1090313) 1 NC_009633.1 hypothetical protein 1090313 5311095 Amet_1044 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318918.1 1090104 R 293826 CDS YP_001318919.1 150388870 5311096 complement(1090317..1091060) 1 NC_009633.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein; IstB ATP binding domain-containing protein 1091060 5311096 Amet_1045 Alkaliphilus metalliredigens QYMF IstB ATP binding domain-containing protein YP_001318919.1 1090317 R 293826 CDS YP_001318920.1 150388871 5311097 complement(1091048..1092601) 1 NC_009633.1 PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22); integrase catalytic subunit 1092601 5311097 Amet_1046 Alkaliphilus metalliredigens QYMF integrase catalytic subunit YP_001318920.1 1091048 R 293826 CDS YP_001318921.1 150388872 5311098 join(1093222..1094010,1094009..1094761) 1 NC_009633.1 KEGG: swo:Swol_2451 hypothetical protein; hypothetical protein 1094761 5311098 Amet_1047 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318921.1 1093222 D 293826 CDS YP_001318922.1 150388873 5311099 1095115..1095351 1 NC_009633.1 hypothetical protein 1095351 5311099 Amet_1048 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318922.1 1095115 D 293826 CDS YP_001318923.1 150388874 5311100 1095785..1096003 1 NC_009633.1 hypothetical protein 1096003 5311100 Amet_1049 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318923.1 1095785 D 293826 CDS YP_001318924.1 150388875 5311101 1096093..1096596 1 NC_009633.1 hypothetical protein 1096596 5311101 Amet_1050 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318924.1 1096093 D 293826 CDS YP_001318925.1 150388876 5311104 1098205..1098423 1 NC_009633.1 hypothetical protein 1098423 5311104 Amet_1053 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318925.1 1098205 D 293826 CDS YP_001318926.1 150388877 5311105 1099623..1100165 1 NC_009633.1 PFAM: Abortive infection protein; KEGG: bca:BCE_A0113 CAAX amino terminal protease family protein; abortive infection protein 1100165 5311105 Amet_1054 Alkaliphilus metalliredigens QYMF abortive infection protein YP_001318926.1 1099623 D 293826 CDS YP_001318927.1 150388878 5311106 1101171..1101614 1 NC_009633.1 KEGG: mac:MA4628 reverse transcriptase; hypothetical protein 1101614 5311106 Amet_1055 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318927.1 1101171 D 293826 CDS YP_001318928.1 150388879 5311107 complement(1101572..1103629) 1 NC_009633.1 PFAM: Resolvase, N-terminal domain; KEGG: fra:Francci3_2088 recombinase; resolvase domain-containing protein 1103629 5311107 Amet_1056 Alkaliphilus metalliredigens QYMF resolvase domain-containing protein YP_001318928.1 1101572 R 293826 CDS YP_001318929.1 150388880 5311109 1104728..1104967 1 NC_009633.1 hypothetical protein 1104967 5311109 Amet_1058 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318929.1 1104728 D 293826 CDS YP_001318930.1 150388881 5311110 1105572..1108877 1 NC_009633.1 PFAM: peptidase M16 domain protein; Peptidase M16C associated domain protein; KEGG: cno:NT01CX_1662 Zn-dependent peptidase, insulinase family; peptidase M16C associated domain-containing protein 1108877 5311110 Amet_1059 Alkaliphilus metalliredigens QYMF peptidase M16C associated domain-containing protein YP_001318930.1 1105572 D 293826 CDS YP_001318931.1 150388882 5311111 1109338..1110114 1 NC_009633.1 PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: tte:TTE2508 putative regulator of acetoin metabolism; regulatory protein LuxR 1110114 5311111 Amet_1060 Alkaliphilus metalliredigens QYMF regulatory protein LuxR YP_001318931.1 1109338 D 293826 CDS YP_001318932.1 150388883 5311112 1110154..1110312 1 NC_009633.1 hypothetical protein 1110312 5311112 Amet_1061 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318932.1 1110154 D 293826 CDS YP_001318933.1 150388884 5311113 1110496..1110903 1 NC_009633.1 hypothetical protein 1110903 5311113 Amet_1062 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318933.1 1110496 D 293826 CDS YP_001318934.1 150388885 5311114 complement(1111458..1113227) 1 NC_009633.1 TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; Oligopeptidase F; KEGG: tte:TTE2488 oligoendopeptidase F; pepF/M3 family oligoendopeptidase 1113227 5311114 Amet_1063 Alkaliphilus metalliredigens QYMF pepF/M3 family oligoendopeptidase YP_001318934.1 1111458 R 293826 CDS YP_001318935.1 150388886 5311115 complement(1113299..1114840) 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bha:BH1089 hypothetical protein; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1114840 5311115 Amet_1064 Alkaliphilus metalliredigens QYMF nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001318935.1 1113299 R 293826 CDS YP_001318936.1 150388887 5311116 1115206..1116195 1 NC_009633.1 PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00263 predicted catabolite control protein A; alanine racemase 1116195 5311116 Amet_1065 Alkaliphilus metalliredigens QYMF alanine racemase YP_001318936.1 1115206 D 293826 CDS YP_001318937.1 150388888 5311117 1116651..1117937 1 NC_009633.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1117937 tig 5311117 tig Alkaliphilus metalliredigens QYMF trigger factor YP_001318937.1 1116651 D 293826 CDS YP_001318938.1 150388889 5311118 1117985..1118569 1 NC_009633.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1118569 clpP 5311118 clpP Alkaliphilus metalliredigens QYMF ATP-dependent Clp protease proteolytic subunit YP_001318938.1 1117985 D 293826 CDS YP_001318939.1 150388890 5311119 1118594..1119856 1 NC_009633.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1119856 clpX 5311119 clpX Alkaliphilus metalliredigens QYMF ATP-dependent protease ATP-binding subunit ClpX YP_001318939.1 1118594 D 293826 CDS YP_001318940.1 150388891 5311120 complement(1120001..1120525) 1 NC_009633.1 PFAM: Chromate transporter; KEGG: ctc:CTC00661 chromate transport protein; chromate transporter 1120525 5311120 Amet_1069 Alkaliphilus metalliredigens QYMF chromate transporter YP_001318940.1 1120001 R 293826 CDS YP_001318941.1 150388892 5311121 complement(1120512..1121063) 1 NC_009633.1 PFAM: Chromate transporter; KEGG: ctc:CTC00660 chromate transport protein; chromate transporter 1121063 5311121 Amet_1070 Alkaliphilus metalliredigens QYMF chromate transporter YP_001318941.1 1120512 R 293826 CDS YP_001318942.1 150388893 5311122 1121249..1122943 1 NC_009633.1 TIGRFAM: Sporulation protease LonB; PFAM: magnesium chelatase, ChlI subunit; AAA ATPase, central domain protein; peptidase S16, lon domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_2742 endopeptidase La; sporulation protease LonB 1122943 5311122 Amet_1071 Alkaliphilus metalliredigens QYMF sporulation protease LonB YP_001318942.1 1121249 D 293826 CDS YP_001318943.1 150388894 5311123 1123176..1125527 1 NC_009633.1 KEGG: cth:Cthe_0082 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La 1125527 5311123 Amet_1072 Alkaliphilus metalliredigens QYMF ATP-dependent protease La YP_001318943.1 1123176 D 293826 CDS YP_001318944.1 150388895 5311124 1125517..1126143 1 NC_009633.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 1126143 engB 5311124 engB Alkaliphilus metalliredigens QYMF ribosome biogenesis GTP-binding protein YsxC YP_001318944.1 1125517 D 293826 CDS YP_001318945.1 150388896 5311125 1126258..1126695 1 NC_009633.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 1126695 5311125 Amet_1074 Alkaliphilus metalliredigens QYMF 3-dehydroquinate dehydratase YP_001318945.1 1126258 D 293826 CDS YP_001318946.1 150388897 5311126 1126771..1127631 1 NC_009633.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: lsl:LSL_1795 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 1127631 5311126 Amet_1075 Alkaliphilus metalliredigens QYMF shikimate 5-dehydrogenase YP_001318946.1 1126771 D 293826 CDS YP_001318947.1 150388898 5311127 complement(1127713..1128597) 1 NC_009633.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: tte:TTE0639 permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 1128597 5311127 Amet_1076 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318947.1 1127713 R 293826 CDS YP_001318948.1 150388899 5311128 1129107..1130651 1 NC_009633.1 TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: cth:Cthe_0875 anthranilate synthase component I; anthranilate synthase component I 1130651 5311128 Amet_1077 Alkaliphilus metalliredigens QYMF anthranilate synthase component I YP_001318948.1 1129107 D 293826 CDS YP_001318949.1 150388900 5311129 1130663..1131226 1 NC_009633.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: tma:TM0141 anthranilate synthase component II / anthranilate phosphoribosyltransferase; glutamine amidotransferase of anthranilate synthase 1131226 5311129 Amet_1078 Alkaliphilus metalliredigens QYMF glutamine amidotransferase of anthranilate synthase YP_001318949.1 1130663 D 293826 CDS YP_001318950.1 150388901 5311130 1131316..1132338 1 NC_009633.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 1132338 trpD 5311130 trpD Alkaliphilus metalliredigens QYMF anthranilate phosphoribosyltransferase YP_001318950.1 1131316 D 293826 CDS YP_001318951.1 150388902 5311131 1132335..1133120 1 NC_009633.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; Indole-3-glycerol phosphate synthase 1133120 trpC 5311131 trpC Alkaliphilus metalliredigens QYMF Indole-3-glycerol phosphate synthase YP_001318951.1 1132335 D 293826 CDS YP_001318952.1 150388903 5311132 1133104..1133727 1 NC_009633.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: tte:TTE1579 phosphoribosylanthranilate isomerase; phosphoribosylanthranilate isomerase 1133727 5311132 Amet_1081 Alkaliphilus metalliredigens QYMF phosphoribosylanthranilate isomerase YP_001318952.1 1133104 D 293826 CDS YP_001318953.1 150388904 5311133 1133724..1134926 1 NC_009633.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1134926 5311133 Amet_1082 Alkaliphilus metalliredigens QYMF tryptophan synthase subunit beta YP_001318953.1 1133724 D 293826 CDS YP_001318954.1 150388905 5311134 1134916..1135716 1 NC_009633.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1135716 trpA 5311134 trpA Alkaliphilus metalliredigens QYMF tryptophan synthase subunit alpha YP_001318954.1 1134916 D 293826 CDS YP_001318955.1 150388906 5311135 complement(1135803..1135961) 1 NC_009633.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_2164 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 1135961 5311135 Amet_1084 Alkaliphilus metalliredigens QYMF rubredoxin-type Fe(Cys)4 protein YP_001318955.1 1135803 R 293826 CDS YP_001318956.1 150388907 5311136 1136166..1137281 1 NC_009633.1 KEGG: bha:BH3246 aminopeptidase; aminopeptidase 1137281 5311136 Amet_1085 Alkaliphilus metalliredigens QYMF aminopeptidase YP_001318956.1 1136166 D 293826 CDS YP_001318957.1 150388908 5311137 complement(1137361..1138107) 1 NC_009633.1 PFAM: protein of unknown function DUF541; KEGG: btl:BALH_3699 hypothetical protein; hypothetical protein 1138107 5311137 Amet_1086 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318957.1 1137361 R 293826 CDS YP_001318958.1 150388909 5311138 1138439..1138660 1 NC_009633.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cac:CAC0669 hypothetical protein; BFD/(2Fe-2S)-binding domain-containing protein 1138660 5311138 Amet_1087 Alkaliphilus metalliredigens QYMF BFD/(2Fe-2S)-binding domain-containing protein YP_001318958.1 1138439 D 293826 CDS YP_001318959.1 150388910 5311139 1138849..1139547 1 NC_009633.1 PFAM: protein of unknown function DUF161; KEGG: dsy:DSY3984 hypothetical protein; hypothetical protein 1139547 5311139 Amet_1088 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318959.1 1138849 D 293826 CDS YP_001318960.1 150388911 5311140 1139835..1141550 1 NC_009633.1 PFAM: glycoside hydrolase, family 18; SMART: chitinase II; KEGG: cth:Cthe_2895 glycoside hydrolase, family 18; glycoside hydrolase 1141550 5311140 Amet_1089 Alkaliphilus metalliredigens QYMF glycoside hydrolase YP_001318960.1 1139835 D 293826 CDS YP_001318961.1 150388912 5311141 1141656..1143176 1 NC_009633.1 PFAM: TPR repeat-containing protein; ADP-ribosylation/Crystallin J1; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mtp:Mthe_0488 ADP-ribosylation/crystallin J1; ADP-ribosylation/crystallin J1 1143176 5311141 Amet_1090 Alkaliphilus metalliredigens QYMF ADP-ribosylation/crystallin J1 YP_001318961.1 1141656 D 293826 CDS YP_001318962.1 150388913 5311142 complement(1143179..1144375) 1 NC_009633.1 PFAM: major facilitator superfamily MFS_1; KEGG: dra:DR1307 major facilitator family protein; major facilitator superfamily transporter 1144375 5311142 Amet_1091 Alkaliphilus metalliredigens QYMF major facilitator superfamily transporter YP_001318962.1 1143179 R 293826 CDS YP_001318963.1 150388914 5311143 1144456..1144743 1 NC_009633.1 hypothetical protein 1144743 5311143 Amet_1092 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318963.1 1144456 D 293826 CDS YP_001318964.1 150388915 5311144 1145134..1145280 1 NC_009633.1 hypothetical protein 1145280 5311144 Amet_1093 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318964.1 1145134 D 293826 CDS YP_001318965.1 150388916 5311145 1145301..1147784 1 NC_009633.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: aeh:Mlg_1383 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 1147784 5311145 Amet_1094 Alkaliphilus metalliredigens QYMF heavy metal translocating P-type ATPase YP_001318965.1 1145301 D 293826 CDS YP_001318966.1 150388917 5311146 1148018..1148464 1 NC_009633.1 hypothetical protein 1148464 5311146 Amet_1095 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318966.1 1148018 D 293826 CDS YP_001318967.1 150388918 5311147 complement(1149014..1149472) 1 NC_009633.1 hypothetical protein 1149472 5311147 Amet_1096 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318967.1 1149014 R 293826 CDS YP_001318968.1 150388919 5311148 complement(1149501..1150061) 1 NC_009633.1 KEGG: mma:MM1839 hypothetical protein; hypothetical protein 1150061 5311148 Amet_1097 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318968.1 1149501 R 293826 CDS YP_001318969.1 150388920 5311150 1151610..1152308 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE2474 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; two component transcriptional regulator 1152308 5311150 Amet_1099 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001318969.1 1151610 D 293826 CDS YP_001318970.1 150388921 5311151 1152305..1153708 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE2473 sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1153708 5311151 Amet_1100 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001318970.1 1152305 D 293826 CDS YP_001318971.1 150388922 5311152 1153937..1155067 1 NC_009633.1 PFAM: YibE/F family protein; KEGG: cac:CAC2436 hypothetical protein; hypothetical protein 1155067 5311152 Amet_1101 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318971.1 1153937 D 293826 CDS YP_001318972.1 150388923 5311153 complement(1155169..1155456) 1 NC_009633.1 hypothetical protein 1155456 5311153 Amet_1102 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318972.1 1155169 R 293826 CDS YP_001318973.1 150388924 5311154 1155874..1156464 1 NC_009633.1 KEGG: sfr:Sfri_3880 hypothetical protein; hypothetical protein 1156464 5311154 Amet_1103 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318973.1 1155874 D 293826 CDS YP_001318974.1 150388925 5311155 1156484..1157395 1 NC_009633.1 PFAM: Ppx/GppA phosphatase; KEGG: ade:Adeh_0658 Ppx/GppA phosphatase; Ppx/GppA phosphatase 1157395 5311155 Amet_1104 Alkaliphilus metalliredigens QYMF Ppx/GppA phosphatase YP_001318974.1 1156484 D 293826 CDS YP_001318975.1 150388926 5311156 1157531..1158520 1 NC_009633.1 PFAM: Uncharacterized protein UPF0065; KEGG: dsy:DSY0995 hypothetical protein; hypothetical protein 1158520 5311156 Amet_1105 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318975.1 1157531 D 293826 CDS YP_001318976.1 150388927 5311157 1158618..1159184 1 NC_009633.1 KEGG: bcl:ABC1014 hypothetical protein; hypothetical protein 1159184 5311157 Amet_1106 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318976.1 1158618 D 293826 CDS YP_001318977.1 150388928 5311158 1159209..1160705 1 NC_009633.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: dsy:DSY0992 hypothetical protein; hypothetical protein 1160705 5311158 Amet_1107 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318977.1 1159209 D 293826 CDS YP_001318978.1 150388929 5311159 1160977..1161282 1 NC_009633.1 hypothetical protein 1161282 5311159 Amet_1108 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318978.1 1160977 D 293826 CDS YP_001318979.1 150388930 5311160 complement(1161378..1163252) 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase; transposase, IS4 family protein 1163252 5311160 Amet_1109 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001318979.1 1161378 R 293826 CDS YP_001318980.1 150388931 5311161 complement(1163538..1163987) 1 NC_009633.1 PFAM: regulatory protein, MarR; KEGG: bcz:BCZK3880 transcriptional regulator, MarR family; MarR family transcriptional regulator 1163987 5311161 Amet_1110 Alkaliphilus metalliredigens QYMF MarR family transcriptional regulator YP_001318980.1 1163538 R 293826 CDS YP_001318981.1 150388932 5311162 1164243..1165610 1 NC_009633.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ctc:CTC00603 Na+ driven multidrug efflux pump (MviN domain); MATE efflux family protein 1165610 5311162 Amet_1111 Alkaliphilus metalliredigens QYMF MATE efflux family protein YP_001318981.1 1164243 D 293826 CDS YP_001318982.1 150388933 5311163 1165793..1166056 1 NC_009633.1 hypothetical protein 1166056 5311163 Amet_1112 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318982.1 1165793 D 293826 CDS YP_001318983.1 150388934 5311164 1166291..1166452 1 NC_009633.1 PFAM: protein of unknown function DUF1540; KEGG: cac:CAC3540 hypothetical protein; hypothetical protein 1166452 5311164 Amet_1113 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318983.1 1166291 D 293826 CDS YP_001318984.1 150388935 5311165 1166696..1167286 1 NC_009633.1 KEGG: ctc:CTC00782 hypothetical protein; hypothetical protein 1167286 5311165 Amet_1114 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318984.1 1166696 D 293826 CDS YP_001318985.1 150388936 5311166 1167348..1167476 1 NC_009633.1 hypothetical protein 1167476 5311166 Amet_1115 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318985.1 1167348 D 293826 CDS YP_001318986.1 150388937 5311167 1167497..1167928 1 NC_009633.1 TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: dsy:DSY0733 hypothetical protein; flavodoxin 1167928 5311167 Amet_1116 Alkaliphilus metalliredigens QYMF flavodoxin YP_001318986.1 1167497 D 293826 CDS YP_001318987.1 150388938 5311168 1168674..1169603 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1521 dipeptide transport system permease protein dppB; binding-protein-dependent transport system inner membrane protein 1169603 5311168 Amet_1117 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001318987.1 1168674 D 293826 CDS YP_001318988.1 150388939 5311169 1169614..1170507 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mma:MM3320 oligopeptide transporter, permease protein; binding-protein-dependent transport system inner membrane protein 1170507 5311169 Amet_1118 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001318988.1 1169614 D 293826 CDS YP_001318989.1 150388940 5311170 1170519..1172075 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 5; KEGG: ssa:SSA_0493 ABC-type dipeptide/nickel transport system, periplasmic component, putative; extracellular solute-binding protein 1172075 5311170 Amet_1119 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001318989.1 1170519 D 293826 CDS YP_001318990.1 150388941 5311171 1172119..1173102 1 NC_009633.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: fnu:FN1110 dipeptide transport ATP-binding protein dppD; oligopeptide/dipeptide ABC transporter ATPase 1173102 5311171 Amet_1120 Alkaliphilus metalliredigens QYMF oligopeptide/dipeptide ABC transporter ATPase YP_001318990.1 1172119 D 293826 CDS YP_001318991.1 150388942 5311172 1173074..1173868 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mac:MA4253 oligopeptide ABC transporter, ATP-binding protein; ABC transporter-like protein 1173868 5311172 Amet_1121 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001318991.1 1173074 D 293826 CDS YP_001318992.1 150388943 5311173 1173861..1175279 1 NC_009633.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cth:Cthe_2306 MATE efflux family protein; MATE efflux family protein 1175279 5311173 Amet_1122 Alkaliphilus metalliredigens QYMF MATE efflux family protein YP_001318992.1 1173861 D 293826 CDS YP_001318993.1 150388944 5311174 1175358..1176305 1 NC_009633.1 PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: ssa:SSA_0496 succinylglutamate desuccinylase / aspartoacylase family, putative; succinylglutamate desuccinylase/aspartoacylase 1176305 5311174 Amet_1123 Alkaliphilus metalliredigens QYMF succinylglutamate desuccinylase/aspartoacylase YP_001318993.1 1175358 D 293826 CDS YP_001318994.1 150388945 5311175 1176579..1176932 1 NC_009633.1 PFAM: Protein of unknown function CGGC region; KEGG: ctc:CTC00418 hypothetical protein; hypothetical protein 1176932 5311175 Amet_1124 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001318994.1 1176579 D 293826 CDS YP_001318995.1 150388946 5311176 1177004..1177342 1 NC_009633.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: ctc:CTC00439 hypothetical protein; cupin 1177342 5311176 Amet_1125 Alkaliphilus metalliredigens QYMF cupin YP_001318995.1 1177004 D 293826 CDS YP_001318996.1 150388947 5311177 complement(1177441..1178124) 1 NC_009633.1 PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: cno:NT01CX_0590 cyclic nucleotide-binding domain containing transcriptional regulator, putative; CRP/FNR family transcriptional regulator 1178124 5311177 Amet_1126 Alkaliphilus metalliredigens QYMF CRP/FNR family transcriptional regulator YP_001318996.1 1177441 R 293826 CDS YP_001318997.1 150388948 5311178 1178323..1182375 1 NC_009633.1 TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: mhu:Mhun_1325 CoA enzyme activase; putative CoA-substrate-specific enzyme activase 1182375 5311178 Amet_1127 Alkaliphilus metalliredigens QYMF putative CoA-substrate-specific enzyme activase YP_001318997.1 1178323 D 293826 CDS YP_001318998.1 150388949 5311179 1182359..1183093 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY2734 hypothetical protein; ABC transporter-like protein 1183093 5311179 Amet_1128 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001318998.1 1182359 D 293826 CDS YP_001318999.1 150388950 5311180 1183179..1184204 1 NC_009633.1 KEGG: cpe:CPE1487 putative sulfonate/nitrate transport system substrate-binding protein; putative sulfonate/nitrate transport system substrate-binding protein 1184204 5311180 Amet_1129 Alkaliphilus metalliredigens QYMF putative sulfonate/nitrate transport system substrate-binding protein YP_001318999.1 1183179 D 293826 CDS YP_001319000.1 150388951 5311181 1184179..1184931 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_1465 ABC transporter, permease protein, cysTW family, putative; binding-protein-dependent transport system inner membrane protein 1184931 5311181 Amet_1130 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001319000.1 1184179 D 293826 CDS YP_001319001.1 150388952 5311182 1185239..1186876 1 NC_009633.1 TIGRFAM: nickel ABC transporter, periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein, family 5; KEGG: wsu:WS0984 putative nikA protein; nickel ABC transporter periplasmic nickel-binding protein 1186876 5311182 Amet_1131 Alkaliphilus metalliredigens QYMF nickel ABC transporter periplasmic nickel-binding protein YP_001319001.1 1185239 D 293826 CDS YP_001319002.1 150388953 5311183 1186955..1187890 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0985 nickel transport system permease; binding-protein-dependent transport system inner membrane protein 1187890 5311183 Amet_1132 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001319002.1 1186955 D 293826 CDS YP_001319003.1 150388954 5311184 1187890..1188711 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0986 oligopeptide ABC transporter permease; binding-protein-dependent transport system inner membrane protein 1188711 5311184 Amet_1133 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001319003.1 1187890 D 293826 CDS YP_001319004.1 150388955 5311185 1188716..1189525 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0987 putative oligopeptide transporter; ABC transporter-like protein 1189525 5311185 Amet_1134 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319004.1 1188716 D 293826 CDS YP_001319005.1 150388956 5311186 1189538..1190341 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0988 oligopeptide ABC transporter ATP-binding protein; ABC transporter-like protein 1190341 5311186 Amet_1135 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319005.1 1189538 D 293826 CDS YP_001319006.1 150388957 5311187 1190319..1191653 1 NC_009633.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: wsu:WS0989 DNA-damage-inducible protein; MATE efflux family protein 1191653 5311187 Amet_1136 Alkaliphilus metalliredigens QYMF MATE efflux family protein YP_001319006.1 1190319 D 293826 CDS YP_001319007.1 150388958 5311188 1191692..1193299 1 NC_009633.1 PFAM: histidine kinase, HAMP region domain protein; histidine kinase internal region; KEGG: ctc:CTC01848 two-component sensor kinase YesM; histidine kinase internal subunit 1193299 5311188 Amet_1137 Alkaliphilus metalliredigens QYMF histidine kinase internal subunit YP_001319007.1 1191692 D 293826 CDS YP_001319008.1 150388959 5311189 1193292..1194053 1 NC_009633.1 PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: ctc:CTC01849 transcriptional regulatory protein; response regulator receiver protein 1194053 5311189 Amet_1138 Alkaliphilus metalliredigens QYMF response regulator receiver protein YP_001319008.1 1193292 D 293826 CDS YP_001319009.1 150388960 5311190 complement(1194142..1196061) 1 NC_009633.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY0154 hypothetical protein; heavy metal translocating P-type ATPase 1196061 5311190 Amet_1139 Alkaliphilus metalliredigens QYMF heavy metal translocating P-type ATPase YP_001319009.1 1194142 R 293826 CDS YP_001319010.1 150388961 5311191 complement(1196070..1196345) 1 NC_009633.1 PFAM: protein of unknown function DUF156; KEGG: dsy:DSY0162 hypothetical protein; hypothetical protein 1196345 5311191 Amet_1140 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319010.1 1196070 R 293826 CDS YP_001319011.1 150388962 5311192 1196653..1198980 1 NC_009633.1 PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; KEGG: cno:NT01CX_2289 DNA topoisomerase III; DNA topoisomerase type IA central domain-containing protein 1198980 5311192 Amet_1141 Alkaliphilus metalliredigens QYMF DNA topoisomerase type IA central domain-containing protein YP_001319011.1 1196653 D 293826 CDS YP_001319012.1 150388963 5311193 1199459..1199989 1 NC_009633.1 PFAM: cation antiporter; KEGG: pfu:PF1153 putative multisubunit Na+/H+ antiporter; cation antiporter 1199989 5311193 Amet_1142 Alkaliphilus metalliredigens QYMF cation antiporter YP_001319012.1 1199459 D 293826 CDS YP_001319013.1 150388964 5311194 1200034..1200291 1 NC_009633.1 PFAM: multiple resistance and pH regulation protein F; KEGG: pfu:PF1152 putative multisubunit Na+/H+ antiporter; multiple resistance and pH regulation protein F 1200291 5311194 Amet_1143 Alkaliphilus metalliredigens QYMF multiple resistance and pH regulation protein F YP_001319013.1 1200034 D 293826 CDS YP_001319014.1 150388965 5311195 1200295..1200594 1 NC_009633.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: pfu:PF1151 putative multisubunit Na+/H+ antiporter; monovalent cation/proton antiporter subunit MnhG/PhaG 1200594 5311195 Amet_1144 Alkaliphilus metalliredigens QYMF monovalent cation/proton antiporter subunit MnhG/PhaG YP_001319014.1 1200295 D 293826 CDS YP_001319015.1 150388966 5311196 1200591..1201130 1 NC_009633.1 hypothetical protein 1201130 5311196 Amet_1145 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319015.1 1200591 D 293826 CDS YP_001319016.1 150388967 5311197 1201127..1201390 1 NC_009633.1 hypothetical protein 1201390 5311197 Amet_1146 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319016.1 1201127 D 293826 CDS YP_001319017.1 150388968 5311198 1201474..1201860 1 NC_009633.1 PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: sha:SH2274 multisubunit Na+/H+ antiporter, MnhB subunit; Na+/H+ antiporter MnhB subunit-like protein 1201860 5311198 Amet_1147 Alkaliphilus metalliredigens QYMF Na+/H+ antiporter MnhB subunit-like protein YP_001319017.1 1201474 D 293826 CDS YP_001319018.1 150388969 5311199 1201945..1202220 1 NC_009633.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: hma:rrnAC3532 putative multicomponent Na+:H+ antiporter subunit C; NADH-ubiquinone oxidoreductase, chain 4L 1202220 5311199 Amet_1148 Alkaliphilus metalliredigens QYMF NADH-ubiquinone oxidoreductase, chain 4L YP_001319018.1 1201945 D 293826 CDS YP_001319019.1 150388970 5311200 1202217..1203815 1 NC_009633.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: wol:WD1107 Na+/H+ antiporter subunit, putative; NADH dehydrogenase (quinone) 1203815 5311200 Amet_1149 Alkaliphilus metalliredigens QYMF NADH dehydrogenase (quinone) YP_001319019.1 1202217 D 293826 CDS YP_001319020.1 150388971 5311201 1204248..1204958 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: oih:OB0967 transcriptional regulator; GntR family transcriptional regulator 1204958 5311201 Amet_1150 Alkaliphilus metalliredigens QYMF GntR family transcriptional regulator YP_001319020.1 1204248 D 293826 CDS YP_001319021.1 150388972 5311202 1205019..1205618 1 NC_009633.1 KEGG: cac:CAC3379 uncharacterized protein, YQFW B.subtilis homolog; hypothetical protein 1205618 5311202 Amet_1151 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319021.1 1205019 D 293826 CDS YP_001319022.1 150388973 5311203 1205874..1206299 1 NC_009633.1 KEGG: oih:OB0968 hypothetical protein; hypothetical protein 1206299 5311203 Amet_1152 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319022.1 1205874 D 293826 CDS YP_001319023.1 150388974 5311204 1206332..1206928 1 NC_009633.1 KEGG: oih:OB0969 phosphonate metabolism protein; phosphonate metabolism protein 1206928 5311204 Amet_1153 Alkaliphilus metalliredigens QYMF phosphonate metabolism protein YP_001319023.1 1206332 D 293826 CDS YP_001319024.1 150388975 5311205 1206930..1208135 1 NC_009633.1 PFAM: phosphonate metabolism; KEGG: oih:OB0970 phosphonate metabolism protein; phosphonate metabolism protein 1208135 5311205 Amet_1154 Alkaliphilus metalliredigens QYMF phosphonate metabolism protein YP_001319024.1 1206930 D 293826 CDS YP_001319025.1 150388976 5311206 1208119..1208988 1 NC_009633.1 PFAM: phosphonate metabolism PhnJ; KEGG: oih:OB0971 phosphonate metabolism protein; phosphonate metabolism PhnJ 1208988 5311206 Amet_1155 Alkaliphilus metalliredigens QYMF phosphonate metabolism PhnJ YP_001319025.1 1208119 D 293826 CDS YP_001319026.1 150388977 5311207 1208981..1209826 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB0972 phosphonate ABC transporter ATP-binding protein; ABC transporter-like protein 1209826 5311207 Amet_1156 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319026.1 1208981 D 293826 CDS YP_001319027.1 150388978 5311208 1209871..1211064 1 NC_009633.1 TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; KEGG: oih:OB0973 phosphonate metabolism protein; phosphonate metabolism protein PhnM 1211064 5311208 Amet_1157 Alkaliphilus metalliredigens QYMF phosphonate metabolism protein PhnM YP_001319027.1 1209871 D 293826 CDS YP_001319028.1 150388979 5311209 1211104..1211811 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB0974 phosophonate ABC transporter ATP-binding protein; ABC transporter-like protein 1211811 5311209 Amet_1158 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319028.1 1211104 D 293826 CDS YP_001319029.1 150388980 5311211 complement(1212265..1213107) 1 NC_009633.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0470 phosphonate transport system permease protein; phosphonate ABC transporter inner membrane protein 1213107 5311211 Amet_1160 Alkaliphilus metalliredigens QYMF phosphonate ABC transporter inner membrane protein YP_001319029.1 1212265 R 293826 CDS YP_001319030.1 150388981 5311212 complement(1213104..1213973) 1 NC_009633.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0470 phosphonate transport system permease protein; phosphonate ABC transporter inner membrane protein 1213973 5311212 Amet_1161 Alkaliphilus metalliredigens QYMF phosphonate ABC transporter inner membrane protein YP_001319030.1 1213104 R 293826 CDS YP_001319031.1 150388982 5311213 complement(1213993..1214736) 1 NC_009633.1 TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0469 phosphonate transport system ATP-binding protein; phosphonate ABC transporter ATPase 1214736 5311213 Amet_1162 Alkaliphilus metalliredigens QYMF phosphonate ABC transporter ATPase YP_001319031.1 1213993 R 293826 CDS YP_001319032.1 150388983 5311214 1214899..1216359 1 NC_009633.1 KEGG: ctc:CTC00917 transposase; transposase 1216359 5311214 Amet_1163 Alkaliphilus metalliredigens QYMF transposase YP_001319032.1 1214899 D 293826 CDS YP_001319033.1 150388984 5311215 complement(1216489..1217499) 1 NC_009633.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: bha:BH0468 phosphonate transport system substrate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 1217499 5311215 Amet_1164 Alkaliphilus metalliredigens QYMF phosphonate ABC transporter periplasmic phosphonate-binding protein YP_001319033.1 1216489 R 293826 CDS YP_001319034.1 150388985 5311216 1218284..1219330 1 NC_009633.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: GAF domain protein; metal-dependent phosphohydrolase, HD region; KEGG: tte:TTE0038 response regulators consisting of a CheY-like receiver domain and an HD-GYP domain; metal dependent phosphohydrolase 1219330 5311216 Amet_1165 Alkaliphilus metalliredigens QYMF metal dependent phosphohydrolase YP_001319034.1 1218284 D 293826 CDS YP_001319035.1 150388986 5311218 1220114..1221652 1 NC_009633.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: mxa:MXAN_3705 GAF domain/GGDEF domain protein; diguanylate cyclase 1221652 5311218 Amet_1167 Alkaliphilus metalliredigens QYMF diguanylate cyclase YP_001319035.1 1220114 D 293826 CDS YP_001319036.1 150388987 5311219 1221783..1223285 1 NC_009633.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: bcz:BCZK1088 cardiolipin synthetase; phospholipase D/transphosphatidylase 1223285 5311219 Amet_1168 Alkaliphilus metalliredigens QYMF phospholipase D/transphosphatidylase YP_001319036.1 1221783 D 293826 CDS YP_001319037.1 150388988 5311220 1223355..1224368 1 NC_009633.1 KEGG: cth:Cthe_0352 hypothetical protein; hypothetical protein 1224368 5311220 Amet_1169 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319037.1 1223355 D 293826 CDS YP_001319038.1 150388989 5311221 1224340..1225452 1 NC_009633.1 KEGG: cth:Cthe_0353 hypothetical protein; hypothetical protein 1225452 5311221 Amet_1170 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319038.1 1224340 D 293826 CDS YP_001319039.1 150388990 5311222 1225427..1226416 1 NC_009633.1 TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: mta:Moth_1149 CoA enzyme activase; putative CoA-substrate-specific enzyme activase 1226416 5311222 Amet_1171 Alkaliphilus metalliredigens QYMF putative CoA-substrate-specific enzyme activase YP_001319039.1 1225427 D 293826 CDS YP_001319040.1 150388991 5311224 1227685..1228431 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1394 putative manganese transport system ATP-binding protein; ABC transporter-like protein 1228431 5311224 Amet_1173 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319040.1 1227685 D 293826 CDS YP_001319041.1 150388992 5311225 1228447..1229277 1 NC_009633.1 PFAM: ABC-3 protein; KEGG: cth:Cthe_0549 ABC-3; ABC-3 protein 1229277 5311225 Amet_1174 Alkaliphilus metalliredigens QYMF ABC-3 protein YP_001319041.1 1228447 D 293826 CDS YP_001319042.1 150388993 5311226 1229452..1229910 1 NC_009633.1 hypothetical protein 1229910 5311226 Amet_1175 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319042.1 1229452 D 293826 CDS YP_001319043.1 150388994 5311227 complement(1229953..1230141) 1 NC_009633.1 KEGG: cno:NT01CX_0906 hypothetical protein; hypothetical protein 1230141 5311227 Amet_1176 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319043.1 1229953 R 293826 CDS YP_001319044.1 150388995 5311228 1230405..1232537 1 NC_009633.1 TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; KEGG: ctc:CTC01156 carbon monoxide dehydrogenase beta subunit; carbon-monoxide dehydrogenase, catalytic subunit 1232537 5311228 Amet_1177 Alkaliphilus metalliredigens QYMF carbon-monoxide dehydrogenase, catalytic subunit YP_001319044.1 1230405 D 293826 CDS YP_001319045.1 150388996 5311229 complement(1232699..1233106) 1 NC_009633.1 KEGG: mkm:Mkms_2198 protein of unknown function DUF1622; hypothetical protein 1233106 5311229 Amet_1178 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319045.1 1232699 R 293826 CDS YP_001319046.1 150388997 5311230 1233426..1234166 1 NC_009633.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cth:Cthe_1959 methyltransferase type 11; type 12 methyltransferase 1234166 5311230 Amet_1179 Alkaliphilus metalliredigens QYMF type 12 methyltransferase YP_001319046.1 1233426 D 293826 CDS YP_001319047.1 150388998 5311231 1234186..1234872 1 NC_009633.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: mta:Moth_0824 transcriptional regulator, Crp/Fnr family; CRP/FNR family transcriptional regulator 1234872 5311231 Amet_1180 Alkaliphilus metalliredigens QYMF CRP/FNR family transcriptional regulator YP_001319047.1 1234186 D 293826 CDS YP_001319048.1 150388999 5311232 1234922..1235182 1 NC_009633.1 PFAM: protein of unknown function DUF156; KEGG: tte:TTE1664 hypothetical protein; hypothetical protein 1235182 5311232 Amet_1181 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319048.1 1234922 D 293826 CDS YP_001319049.1 150389000 5311233 complement(1235221..1235790) 1 NC_009633.1 KEGG: tte:TTE2425 hypothetical protein; hypothetical protein 1235790 5311233 Amet_1182 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319049.1 1235221 R 293826 CDS YP_001319050.1 150389001 5311234 1235956..1236168 1 NC_009633.1 hypothetical protein 1236168 5311234 Amet_1183 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319050.1 1235956 D 293826 CDS YP_001319051.1 150389002 5311235 1236184..1236720 1 NC_009633.1 TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase, central region; KEGG: bcl:ABC1953 histidinol-phosphatase; HAD superfamily hydrolase 1236720 5311235 Amet_1184 Alkaliphilus metalliredigens QYMF HAD superfamily hydrolase YP_001319051.1 1236184 D 293826 CDS YP_001319052.1 150389003 5311236 1236865..1237092 1 NC_009633.1 Contains selenocysteine; PFAM: glutaredoxin; KEGG: cth:Cthe_0235 glutaredoxin-like protein, YruB-family; glutaredoxin 1237092 5311236 Amet_1185 Alkaliphilus metalliredigens QYMF glutaredoxin YP_001319052.1 1236865 D 293826 CDS YP_001319053.1 150389004 5311237 complement(1237189..1237929) 1 NC_009633.1 PFAM: SH3, type 3 domain protein; SCP-like extracellular protein; KEGG: bha:BH2878 hypothetical protein; SCP-like extracellular protein 1237929 5311237 Amet_1186 Alkaliphilus metalliredigens QYMF SCP-like extracellular protein YP_001319053.1 1237189 R 293826 CDS YP_001319054.1 150389005 5311238 complement(1238025..1239836) 1 NC_009633.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Heme NO binding domain protein; KEGG: tte:TTE0680 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1239836 5311238 Amet_1187 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001319054.1 1238025 R 293826 CDS YP_001319055.1 150389006 5311239 1240346..1240510 1 NC_009633.1 hypothetical protein 1240510 5311239 Amet_1188 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319055.1 1240346 D 293826 CDS YP_001319056.1 150389007 5311240 1241236..1242084 1 NC_009633.1 TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; KEGG: dps:DP2907 probable 3-methyl-2-oxobutanoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 1242084 5311240 Amet_1189 Alkaliphilus metalliredigens QYMF 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_001319056.1 1241236 D 293826 CDS YP_001319057.1 150389008 5311241 1242190..1243128 1 NC_009633.1 KEGG: mth:MTH964 hypothetical protein; hypothetical protein 1243128 5311241 Amet_1190 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319057.1 1242190 D 293826 CDS YP_001319058.1 150389009 5311242 1243239..1244471 1 NC_009633.1 PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: tte:TTE1205 Glutamate dehydrogenase/leucine dehydrogenase; Glu/Leu/Phe/Val dehydrogenase 1244471 5311242 Amet_1191 Alkaliphilus metalliredigens QYMF Glu/Leu/Phe/Val dehydrogenase YP_001319058.1 1243239 D 293826 CDS YP_001319059.1 150389010 5311243 1244515..1245702 1 NC_009633.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pho:PH1043 amidohydrolase; amidohydrolase 1245702 5311243 Amet_1192 Alkaliphilus metalliredigens QYMF amidohydrolase YP_001319059.1 1244515 D 293826 CDS YP_001319060.1 150389011 5311244 1245827..1246672 1 NC_009633.1 PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; KEGG: chy:CHY_1273 transcriptional regulator, IclR family; transcriptional regulator IclR-like protein 1246672 5311244 Amet_1193 Alkaliphilus metalliredigens QYMF transcriptional regulator IclR-like protein YP_001319060.1 1245827 D 293826 CDS YP_001319061.1 150389012 5311245 1246817..1247989 1 NC_009633.1 PFAM: creatinase; peptidase M24; KEGG: bcl:ABC0020 Xaa-Pro dipeptidase; creatinase 1247989 5311245 Amet_1194 Alkaliphilus metalliredigens QYMF creatinase YP_001319061.1 1246817 D 293826 CDS YP_001319062.1 150389013 5311246 1248155..1248889 1 NC_009633.1 PFAM: Asp/Glu racemase; KEGG: pho:PH0985 arylmalonate decarboxylase; Asp/Glu racemase 1248889 5311246 Amet_1195 Alkaliphilus metalliredigens QYMF Asp/Glu racemase YP_001319062.1 1248155 D 293826 CDS YP_001319063.1 150389014 5311247 1248891..1249835 1 NC_009633.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: mac:MA3243 integral membrane protein; hypothetical protein 1249835 5311247 Amet_1196 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319063.1 1248891 D 293826 CDS YP_001319064.1 150389015 5311248 1249856..1250404 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: oih:OB0365 hypothetical protein; N-acetyltransferase GCN5 1250404 5311248 Amet_1197 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001319064.1 1249856 D 293826 CDS YP_001319065.1 150389016 5311249 complement(1250491..1251357) 1 NC_009633.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 1251357 5311249 Amet_1198 Alkaliphilus metalliredigens QYMF 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_001319065.1 1250491 R 293826 CDS YP_001319066.1 150389017 5311250 complement(1251357..1253078) 1 NC_009633.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: bat:BAS3623 pyruvate ferredoxin oxidoreductase, alpha subunit, putative; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 1253078 5311250 Amet_1199 Alkaliphilus metalliredigens QYMF pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_001319066.1 1251357 R 293826 CDS YP_001319067.1 150389018 5311251 1253449..1254450 1 NC_009633.1 TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; KEGG: cno:NT01CX_1355 tryptophanyl-tRNA synthetase; tryptophanyl-tRNA synthetase 1254450 5311251 Amet_1200 Alkaliphilus metalliredigens QYMF tryptophanyl-tRNA synthetase YP_001319067.1 1253449 D 293826 CDS YP_001319068.1 150389019 5311252 1254568..1254750 1 NC_009633.1 PFAM: small acid-soluble spore protein, alpha/beta type; alpha/beta type small acid-soluble spore protein 1254750 5311252 Amet_1201 Alkaliphilus metalliredigens QYMF alpha/beta type small acid-soluble spore protein YP_001319068.1 1254568 D 293826 CDS YP_001319069.1 150389020 5311253 1254875..1255582 1 NC_009633.1 PFAM: protein of unknown function DUF881; KEGG: tte:TTE0278 hypothetical protein; hypothetical protein 1255582 5311253 Amet_1202 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319069.1 1254875 D 293826 CDS YP_001319070.1 150389021 5311254 complement(1255676..1255843) 1 NC_009633.1 hypothetical protein 1255843 5311254 Amet_1203 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319070.1 1255676 R 293826 CDS YP_001319071.1 150389022 5311255 complement(1255952..1256227) 1 NC_009633.1 hypothetical protein 1256227 5311255 Amet_1204 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319071.1 1255952 R 293826 CDS YP_001319072.1 150389023 5311256 1256321..1256989 1 NC_009633.1 PFAM: amino acid-binding ACT domain protein; MgtC/SapB transporter; KEGG: cth:Cthe_1919 MgtC/SapB transporter; MgtC/SapB transporter 1256989 5311256 Amet_1205 Alkaliphilus metalliredigens QYMF MgtC/SapB transporter YP_001319072.1 1256321 D 293826 CDS YP_001319073.1 150389024 5311257 1257064..1257708 1 NC_009633.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 1257708 trmB 5311257 trmB Alkaliphilus metalliredigens QYMF tRNA (guanine-N(7)-)-methyltransferase YP_001319073.1 1257064 D 293826 CDS YP_001319074.1 150389025 5311258 complement(1257715..1257915) 1 NC_009633.1 hypothetical protein 1257915 5311258 Amet_1207 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319074.1 1257715 R 293826 CDS YP_001319075.1 150389026 5311259 1258113..1258637 1 NC_009633.1 hypothetical protein 1258637 5311259 Amet_1208 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319075.1 1258113 D 293826 CDS YP_001319076.1 150389027 5311260 complement(1258731..1259096) 1 NC_009633.1 hypothetical protein 1259096 5311260 Amet_1209 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319076.1 1258731 R 293826 CDS YP_001319077.1 150389028 5311261 1259440..1259634 1 NC_009633.1 hypothetical protein 1259634 5311261 Amet_1210 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319077.1 1259440 D 293826 CDS YP_001319078.1 150389029 5311262 1259737..1261152 1 NC_009633.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: hal:VNG0727C hypothetical protein; MATE efflux family protein 1261152 5311262 Amet_1211 Alkaliphilus metalliredigens QYMF MATE efflux family protein YP_001319078.1 1259737 D 293826 CDS YP_001319079.1 150389030 5311263 complement(1261246..1262103) 1 NC_009633.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 1262103 5311263 Amet_1212 Alkaliphilus metalliredigens QYMF 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_001319079.1 1261246 R 293826 CDS YP_001319080.1 150389031 5311264 complement(1262104..1263786) 1 NC_009633.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tte:TTE0961 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 1263786 5311264 Amet_1213 Alkaliphilus metalliredigens QYMF pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_001319080.1 1262104 R 293826 CDS YP_001319081.1 150389032 5311265 1264083..1264835 1 NC_009633.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: cac:CAC0507 predicted metal-dependent membrane hydrolase; membrane-bound metal-dependent hydrolase 1264835 5311265 Amet_1214 Alkaliphilus metalliredigens QYMF membrane-bound metal-dependent hydrolase YP_001319081.1 1264083 D 293826 CDS YP_001319082.1 150389033 5311266 complement(1264840..1265148) 1 NC_009633.1 PFAM: branched-chain amino acid transport; KEGG: oih:OB1120 hypothetical protein; branched-chain amino acid transport 1265148 5311266 Amet_1215 Alkaliphilus metalliredigens QYMF branched-chain amino acid transport YP_001319082.1 1264840 R 293826 CDS YP_001319083.1 150389034 5311267 complement(1265153..1265896) 1 NC_009633.1 PFAM: AzlC family protein; KEGG: oih:OB1119 branched-chain amino acid transporter; AzlC family protein 1265896 5311267 Amet_1216 Alkaliphilus metalliredigens QYMF AzlC family protein YP_001319083.1 1265153 R 293826 CDS YP_001319084.1 150389035 5311268 1266156..1266875 1 NC_009633.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sth:STH2778 hypothetical protein; hydrolase 1266875 5311268 Amet_1217 Alkaliphilus metalliredigens QYMF hydrolase YP_001319084.1 1266156 D 293826 CDS YP_001319085.1 150389036 5311269 1267024..1267452 1 NC_009633.1 PFAM: Domain of unknown function DUF1893; KEGG: bfr:BF4297 putative TonB-dependent outer membrane receptor; hypothetical protein 1267452 5311269 Amet_1218 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319085.1 1267024 D 293826 CDS YP_001319086.1 150389037 5311270 1267606..1267926 1 NC_009633.1 hypothetical protein 1267926 5311270 Amet_1219 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319086.1 1267606 D 293826 CDS YP_001319087.1 150389038 5311271 1267936..1268772 1 NC_009633.1 SMART: RNA binding S1 domain protein; KEGG: cno:NT01CX_0180 S1 RNA binding domain; RNA-binding S1 domain-containing protein 1268772 5311271 Amet_1220 Alkaliphilus metalliredigens QYMF RNA-binding S1 domain-containing protein YP_001319087.1 1267936 D 293826 CDS YP_001319088.1 150389039 5311272 1268798..1269172 1 NC_009633.1 PFAM: protein of unknown function DUF322; KEGG: sth:STH1852 putative alkaline-shock protein; hypothetical protein 1269172 5311272 Amet_1221 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319088.1 1268798 D 293826 CDS YP_001319089.1 150389040 5311273 complement(1269617..1270003) 1 NC_009633.1 KEGG: ddi:DDB_0231185 actin-binding protein; hypothetical protein 1270003 5311273 Amet_1222 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319089.1 1269617 R 293826 CDS YP_001319090.1 150389041 5311274 complement(1270185..1270415) 1 NC_009633.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: cac:CAC1747 acyl carrier protein, ACP; acyl carrier protein 1270415 5311274 Amet_1223 Alkaliphilus metalliredigens QYMF acyl carrier protein YP_001319090.1 1270185 R 293826 CDS YP_001319091.1 150389042 5311275 1270672..1271010 1 NC_009633.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: chy:CHY_2597 putative rubredoxin; rubredoxin-type Fe(Cys)4 protein 1271010 5311275 Amet_1224 Alkaliphilus metalliredigens QYMF rubredoxin-type Fe(Cys)4 protein YP_001319091.1 1270672 D 293826 CDS YP_001319092.1 150389043 5311276 1271257..1272882 1 NC_009633.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Pi-cotransporter; PhoU family protein; KEGG: cno:NT01CX_1154 Na/Pi cotransporter family protein; Na/Pi-cotransporter II-like protein 1272882 5311276 Amet_1225 Alkaliphilus metalliredigens QYMF Na/Pi-cotransporter II-like protein YP_001319092.1 1271257 D 293826 CDS YP_001319093.1 150389044 5311277 1273222..1274040 1 NC_009633.1 TIGRFAM: cyanophycinase; PFAM: peptidase S51, dipeptidase E; KEGG: swo:Swol_1351 cyanophycinase; cyanophycinase 1274040 5311277 Amet_1226 Alkaliphilus metalliredigens QYMF cyanophycinase YP_001319093.1 1273222 D 293826 CDS YP_001319094.1 150389045 5311278 1274085..1276748 1 NC_009633.1 catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 1276748 5311278 Amet_1227 Alkaliphilus metalliredigens QYMF cyanophycin synthetase YP_001319094.1 1274085 D 293826 CDS YP_001319095.1 150389046 5311279 1276958..1277683 1 NC_009633.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cac:CAC0263 phosphoserine phosphatase related protein; HAD family hydrolase 1277683 5311279 Amet_1228 Alkaliphilus metalliredigens QYMF HAD family hydrolase YP_001319095.1 1276958 D 293826 CDS YP_001319096.1 150389047 5311280 1277941..1278258 1 NC_009633.1 PFAM: regulatory protein, ArsR; KEGG: dsy:DSY4143 hypothetical protein; regulatory protein ArsR 1278258 5311280 Amet_1229 Alkaliphilus metalliredigens QYMF regulatory protein ArsR YP_001319096.1 1277941 D 293826 CDS YP_001319097.1 150389048 5311281 1278279..1279262 1 NC_009633.1 PFAM: permease; KEGG: mmp:MMP0202 hypothetical protein; permease 1279262 5311281 Amet_1230 Alkaliphilus metalliredigens QYMF permease YP_001319097.1 1278279 D 293826 CDS YP_001319098.1 150389049 5311282 1279341..1279577 1 NC_009633.1 TIGRFAM: redox-active disulfide protein 2; KEGG: chy:CHY_1096 redox-active disulfide protein 2; redox-active disulfide protein 2 1279577 5311282 Amet_1231 Alkaliphilus metalliredigens QYMF redox-active disulfide protein 2 YP_001319098.1 1279341 D 293826 CDS YP_001319099.1 150389050 5311283 complement(1279779..1281653) 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase; transposase, IS4 family protein 1281653 5311283 Amet_1232 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001319099.1 1279779 R 293826 CDS YP_001319100.1 150389051 5311285 complement(1281971..1283011) 1 NC_009633.1 PFAM: ApbE family lipoprotein; KEGG: cpe:CPE2227 thiamin biosynthesis lipoprotein; ApbE family lipoprotein 1283011 5311285 Amet_1234 Alkaliphilus metalliredigens QYMF ApbE family lipoprotein YP_001319100.1 1281971 R 293826 CDS YP_001319101.1 150389052 5311286 complement(1283089..1283562) 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1283562 5311286 Amet_1235 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001319101.1 1283089 R 293826 CDS YP_001319102.1 150389053 5311287 1283737..1284579 1 NC_009633.1 PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: swo:Swol_1663 ErfK/YbiS/YcfS/YnhG; ErfK/YbiS/YcfS/YnhG family protein 1284579 5311287 Amet_1236 Alkaliphilus metalliredigens QYMF ErfK/YbiS/YcfS/YnhG family protein YP_001319102.1 1283737 D 293826 CDS YP_001319103.1 150389054 5311288 1284795..1285454 1 NC_009633.1 PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: cac:CAC1432 undecaprenyl pyrophosphate synthase related enzyme; di-trans-poly-cis-decaprenylcistransferase 1285454 5311288 Amet_1237 Alkaliphilus metalliredigens QYMF di-trans-poly-cis-decaprenylcistransferase YP_001319103.1 1284795 D 293826 CDS YP_001319104.1 150389055 5311289 1285628..1285876 1 NC_009633.1 KEGG: chy:CHY_0565 putative mercuric transport protein, selenocysteine-containing; putative mercuric transport protein, selenocysteine-containing 1285876 5311289 Amet_1238 Alkaliphilus metalliredigens QYMF putative mercuric transport protein, selenocysteine-containing YP_001319104.1 1285628 D 293826 CDS YP_001319105.1 150389056 5311290 1286038..1286418 1 NC_009633.1 PFAM: FMN-binding domain protein; KEGG: dsy:DSY3139 putative fumarate reductase flavoprotein subunit; FMN-binding domain-containing protein 1286418 5311290 Amet_1239 Alkaliphilus metalliredigens QYMF FMN-binding domain-containing protein YP_001319105.1 1286038 D 293826 CDS YP_001319106.1 150389057 5311291 complement(1286963..1287703) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bca:BCE_3546 amino acid ABC transporter-like protein; ABC transporter-like protein 1287703 5311291 Amet_1240 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319106.1 1286963 R 293826 CDS YP_001319107.1 150389058 5311292 complement(1287727..1288410) 1 NC_009633.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bca:BCE_3547 amino acid ABC transproter, permease protein VC0009 [imported]; polar amino acid ABC transporter inner membrane subunit 1288410 5311292 Amet_1241 Alkaliphilus metalliredigens QYMF polar amino acid ABC transporter inner membrane subunit YP_001319107.1 1287727 R 293826 CDS YP_001319108.1 150389059 5311293 complement(1288431..1289240) 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 3; KEGG: cpr:CPR_2062 glutamine-binding periplasmic protein of glutamine ABC transporter; extracellular solute-binding protein 1289240 5311293 Amet_1242 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001319108.1 1288431 R 293826 CDS YP_001319109.1 150389060 5311294 1289622..1290350 1 NC_009633.1 PFAM: amino acid-binding ACT domain protein; MgtC/SapB transporter; KEGG: cth:Cthe_1919 MgtC/SapB transporter; MgtC/SapB transporter 1290350 5311294 Amet_1243 Alkaliphilus metalliredigens QYMF MgtC/SapB transporter YP_001319109.1 1289622 D 293826 CDS YP_001319110.1 150389061 5311295 1290603..1290932 1 NC_009633.1 hypothetical protein 1290932 5311295 Amet_1244 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319110.1 1290603 D 293826 CDS YP_001319111.1 150389062 5311297 1291297..1293171 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase; transposase, IS4 family protein 1293171 5311297 Amet_1246 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001319111.1 1291297 D 293826 CDS YP_001319112.1 150389063 5311298 complement(1293285..1293920) 1 NC_009633.1 TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; KEGG: cac:CAC0495 thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 1293920 5311298 Amet_1247 Alkaliphilus metalliredigens QYMF thiamine-phosphate pyrophosphorylase YP_001319112.1 1293285 R 293826 CDS YP_001319113.1 150389064 5311299 complement(1293904..1294722) 1 NC_009633.1 PFAM: hydroxyethylthiazole kinase; KEGG: ctc:CTC01752 hydroxyethylthiazole kinase; hydroxyethylthiazole kinase 1294722 5311299 Amet_1248 Alkaliphilus metalliredigens QYMF hydroxyethylthiazole kinase YP_001319113.1 1293904 R 293826 CDS YP_001319114.1 150389065 5311300 complement(1294747..1295547) 1 NC_009633.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: protein of unknown function UPF0031; Phosphomethylpyrimidine kinase type-1; KEGG: ctc:CTC01753 hydroxymethylpyrimidine kinase; phosphomethylpyrimidine kinase 1295547 5311300 Amet_1249 Alkaliphilus metalliredigens QYMF phosphomethylpyrimidine kinase YP_001319114.1 1294747 R 293826 CDS YP_001319115.1 150389066 5311301 complement(1295565..1296041) 1 NC_009633.1 TIGRFAM: thiW protein; KEGG: ctc:CTC01754 hypothetical protein; thiW protein 1296041 5311301 Amet_1250 Alkaliphilus metalliredigens QYMF thiW protein YP_001319115.1 1295565 R 293826 CDS YP_001319116.1 150389067 5311302 1296501..1297589 1 NC_009633.1 PFAM: dehydrogenase, E1 component; KEGG: ayw:AYWB_136 pyruvate dehydrogenase E1 component alpha subunit; pyruvate dehydrogenase 1297589 5311302 Amet_1251 Alkaliphilus metalliredigens QYMF pyruvate dehydrogenase YP_001319116.1 1296501 D 293826 CDS YP_001319117.1 150389068 5311303 1297589..1298572 1 NC_009633.1 PFAM: Transketolase, central region; Transketolase domain protein; KEGG: mhp:MHP7448_0116 pyruvate dehydrogenase; transketolase, central region 1298572 5311303 Amet_1252 Alkaliphilus metalliredigens QYMF transketolase, central region YP_001319117.1 1297589 D 293826 CDS YP_001319118.1 150389069 5311304 1298588..1299904 1 NC_009633.1 PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: bcl:ABC2418 pyruvate dehydrogenase E2 component; dehydrogenase catalytic domain-containing protein 1299904 5311304 Amet_1253 Alkaliphilus metalliredigens QYMF dehydrogenase catalytic domain-containing protein YP_001319118.1 1298588 D 293826 CDS YP_001319119.1 150389070 5311305 1299950..1301323 1 NC_009633.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ayw:AYWB_139 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 1301323 5311305 Amet_1254 Alkaliphilus metalliredigens QYMF dihydrolipoamide dehydrogenase YP_001319119.1 1299950 D 293826 CDS YP_001319120.1 150389071 5311306 1301531..1302745 1 NC_009633.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sat:SYN_00230 response regulator receiver domain and a sigma factor phosphatase domain; response regulator receiver protein 1302745 5311306 Amet_1255 Alkaliphilus metalliredigens QYMF response regulator receiver protein YP_001319120.1 1301531 D 293826 CDS YP_001319121.1 150389072 5311307 1302920..1305091 1 NC_009633.1 PFAM: GAF domain protein; histidine kinase, HAMP region domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: gme:Gmet_0849 metal dependent phosphohydrolase; metal dependent phosphohydrolase 1305091 5311307 Amet_1256 Alkaliphilus metalliredigens QYMF metal dependent phosphohydrolase YP_001319121.1 1302920 D 293826 CDS YP_001319122.1 150389073 5311308 1305163..1305654 1 NC_009633.1 PFAM: CAT RNA-binding domain protein; PRD domain protein; KEGG: bcl:ABC0193 transcriptional antiterminator, BglG family; transcriptional antiterminator BglG 1305654 5311308 Amet_1257 Alkaliphilus metalliredigens QYMF transcriptional antiterminator BglG YP_001319122.1 1305163 D 293826 CDS YP_001319123.1 150389074 5311309 1305913..1306176 1 NC_009633.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: cte:CT2211 phosphocarrier protein HPr; phosphotransferase system, phosphocarrier protein HPr 1306176 5311309 Amet_1258 Alkaliphilus metalliredigens QYMF phosphotransferase system, phosphocarrier protein HPr YP_001319123.1 1305913 D 293826 CDS YP_001319124.1 150389075 5311310 1306187..1307902 1 NC_009633.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein, mobile region; PEP-utilising protein domain protein; KEGG: tte:TTE2334 phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); phosphoenolpyruvate-protein phosphotransferase 1307902 5311310 Amet_1259 Alkaliphilus metalliredigens QYMF phosphoenolpyruvate-protein phosphotransferase YP_001319124.1 1306187 D 293826 CDS YP_001319125.1 150389076 5311311 1308073..1308834 1 NC_009633.1 PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; KEGG: cno:NT01CX_1476 transcription regulator (IclR family) BH2137; transcriptional regulator IclR-like protein 1308834 5311311 Amet_1260 Alkaliphilus metalliredigens QYMF transcriptional regulator IclR-like protein YP_001319125.1 1308073 D 293826 CDS YP_001319126.1 150389077 5311312 1309047..1309706 1 NC_009633.1 TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: cno:NT01CX_1477 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase, putative; 2-dehydro-3-deoxyphosphogluconate aldolase 1309706 5311312 Amet_1261 Alkaliphilus metalliredigens QYMF 2-dehydro-3-deoxyphosphogluconate aldolase YP_001319126.1 1309047 D 293826 CDS YP_001319127.1 150389078 5311313 1309739..1310761 1 NC_009633.1 PFAM: PfkB domain protein; KEGG: bth:BT_0488 2-dehydro-3-deoxygluconokinase; ribokinase-like domain-containing protein 1310761 5311313 Amet_1262 Alkaliphilus metalliredigens QYMF ribokinase-like domain-containing protein YP_001319127.1 1309739 D 293826 CDS YP_001319128.1 150389079 5311314 1310968..1311651 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: cno:NT01CX_1479 transcriptional regulator, GntR family, putative; GntR family transcriptional regulator 1311651 5311314 Amet_1263 Alkaliphilus metalliredigens QYMF GntR family transcriptional regulator YP_001319128.1 1310968 D 293826 CDS YP_001319129.1 150389080 5311315 1311895..1312608 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: cno:NT01CX_1479 transcriptional regulator, GntR family, putative; GntR family transcriptional regulator 1312608 5311315 Amet_1264 Alkaliphilus metalliredigens QYMF GntR family transcriptional regulator YP_001319129.1 1311895 D 293826 CDS YP_001319130.1 150389081 5311316 1312761..1313243 1 NC_009633.1 KEGG: dsy:DSY3247 hypothetical protein; hypothetical protein 1313243 5311316 Amet_1265 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319130.1 1312761 D 293826 CDS YP_001319131.1 150389082 5311317 1313392..1314399 1 NC_009633.1 PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_B1820 probable extra-cytoplasmic solute receptor; hypothetical protein 1314399 5311317 Amet_1266 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319131.1 1313392 D 293826 CDS YP_001319132.1 150389083 5311318 1314578..1316062 1 NC_009633.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: jan:Jann_1159 protein of unknown function DUF112, transmembrane; hypothetical protein 1316062 5311318 Amet_1267 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319132.1 1314578 D 293826 CDS YP_001319133.1 150389084 5311319 1316192..1317910 1 NC_009633.1 PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: cno:NT01CX_1480 dihydroxyacid dehydratase; dihydroxy-acid dehydratase 1317910 5311319 Amet_1268 Alkaliphilus metalliredigens QYMF dihydroxy-acid dehydratase YP_001319133.1 1316192 D 293826 CDS YP_001319134.1 150389085 5311320 1318293..1320242 1 NC_009633.1 PFAM: glutamine synthetase, catalytic region; KEGG: cno:NT01CX_0655 glutamine synthetase; glutamine synthetase 1320242 5311320 Amet_1269 Alkaliphilus metalliredigens QYMF glutamine synthetase YP_001319134.1 1318293 D 293826 CDS YP_001319135.1 150389086 5311321 1320401..1320853 1 NC_009633.1 KEGG: gfo:orf3266 hypothetical protein; hypothetical protein 1320853 5311321 Amet_1270 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319135.1 1320401 D 293826 CDS YP_001319136.1 150389087 5311322 1320886..1321284 1 NC_009633.1 hypothetical protein 1321284 5311322 Amet_1271 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319136.1 1320886 D 293826 CDS YP_001319137.1 150389088 5311323 complement(1321397..1322140) 1 NC_009633.1 KEGG: ctc:CTC00445 putative metal dependent hydrolase; putative metal dependent hydrolase 1322140 5311323 Amet_1272 Alkaliphilus metalliredigens QYMF putative metal dependent hydrolase YP_001319137.1 1321397 R 293826 CDS YP_001319138.1 150389089 5311324 1322274..1322966 1 NC_009633.1 PFAM: SNARE associated Golgi protein; KEGG: vfi:VFA0098 transporter; hypothetical protein 1322966 5311324 Amet_1273 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319138.1 1322274 D 293826 CDS YP_001319139.1 150389090 5311325 1323124..1325091 1 NC_009633.1 PFAM: GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: syn:slr2100 two-component response regulator; metal dependent phosphohydrolase 1325091 5311325 Amet_1274 Alkaliphilus metalliredigens QYMF metal dependent phosphohydrolase YP_001319139.1 1323124 D 293826 CDS YP_001319140.1 150389091 5311326 1325392..1326942 1 NC_009633.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; KEGG: cno:NT01CX_0224 sensory transduction histidine kinase; multi-sensor signal transduction histidine kinase 1326942 5311326 Amet_1275 Alkaliphilus metalliredigens QYMF multi-sensor signal transduction histidine kinase YP_001319140.1 1325392 D 293826 CDS YP_001319141.1 150389092 5311327 complement(1327188..1328009) 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_2574 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1328009 5311327 Amet_1276 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001319141.1 1327188 R 293826 CDS YP_001319142.1 150389093 5311329 1328598..1330013 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: cno:NT01CX_0224 sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1330013 5311329 Amet_1278 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001319142.1 1328598 D 293826 CDS YP_001319143.1 150389094 5311330 complement(1330231..1330740) 1 NC_009633.1 KEGG: dsy:DSY1430 hypothetical protein; hypothetical protein 1330740 5311330 Amet_1279 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319143.1 1330231 R 293826 CDS YP_001319144.1 150389095 5311331 1331113..1331583 1 NC_009633.1 KEGG: cpf:CPF_1814 hypothetical protein; hypothetical protein 1331583 5311331 Amet_1280 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319144.1 1331113 D 293826 CDS YP_001319145.1 150389096 5311332 1331585..1332250 1 NC_009633.1 PFAM: Accessory gene regulator B; KEGG: cpf:CPF_1813 putative accessory gene regulator protein B; accessory gene regulator B 1332250 5311332 Amet_1281 Alkaliphilus metalliredigens QYMF accessory gene regulator B YP_001319145.1 1331585 D 293826 CDS YP_001319146.1 150389097 5311333 complement(1332535..1333233) 1 NC_009633.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: cno:NT01CX_0653 peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl isomerase 1333233 5311333 Amet_1282 Alkaliphilus metalliredigens QYMF peptidyl-prolyl isomerase YP_001319146.1 1332535 R 293826 CDS YP_001319147.1 150389098 5311334 complement(1333357..1334454) 1 NC_009633.1 TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: swo:Swol_1192 hypothetical protein; spore germination protein 1334454 5311334 Amet_1283 Alkaliphilus metalliredigens QYMF spore germination protein YP_001319147.1 1333357 R 293826 CDS YP_001319148.1 150389099 5311335 complement(1334689..1335846) 1 NC_009633.1 PFAM: spore germination B3 GerAC family protein; KEGG: dsy:DSY4477 hypothetical protein; spore germination B3 GerAC family protein 1335846 5311335 Amet_1284 Alkaliphilus metalliredigens QYMF spore germination B3 GerAC family protein YP_001319148.1 1334689 R 293826 CDS YP_001319149.1 150389100 5311336 complement(1335885..1337432) 1 NC_009633.1 PFAM: GerA spore germination protein; KEGG: cac:CA_P0020 spore germination protein, GrkA; GerA spore germination protein 1337432 5311336 Amet_1285 Alkaliphilus metalliredigens QYMF GerA spore germination protein YP_001319149.1 1335885 R 293826 CDS YP_001319150.1 150389101 5311337 complement(1337559..1339184) 1 NC_009633.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: cno:NT01CX_1710 site-specific recombinases, DNA invertase Pin-like protein; resolvase domain-containing protein 1339184 5311337 Amet_1286 Alkaliphilus metalliredigens QYMF resolvase domain-containing protein YP_001319150.1 1337559 R 293826 CDS YP_001319151.1 150389102 5311338 1339369..1339557 1 NC_009633.1 hypothetical protein 1339557 5311338 Amet_1287 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319151.1 1339369 D 293826 CDS YP_001319152.1 150389103 5311339 1339806..1340804 1 NC_009633.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: mta:Moth_0422 TRAP dicarboxylate transporter, DctP subunit; TRAP dicarboxylate transporter subunit DctP 1340804 5311339 Amet_1288 Alkaliphilus metalliredigens QYMF TRAP dicarboxylate transporter subunit DctP YP_001319152.1 1339806 D 293826 CDS YP_001319153.1 150389104 5311340 1341001..1341489 1 NC_009633.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: mta:Moth_0423 tripartite ATP-independent periplasmic transporter, DctQ component; tripartite ATP-independent periplasmic transporter DctQ 1341489 5311340 Amet_1289 Alkaliphilus metalliredigens QYMF tripartite ATP-independent periplasmic transporter DctQ YP_001319153.1 1341001 D 293826 CDS YP_001319154.1 150389105 5311341 1341525..1342802 1 NC_009633.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: mta:Moth_0424 TRAP dicarboxylate transporter-DctM subunit; TRAP dicarboxylate transporter subunit DctM 1342802 5311341 Amet_1290 Alkaliphilus metalliredigens QYMF TRAP dicarboxylate transporter subunit DctM YP_001319154.1 1341525 D 293826 CDS YP_001319155.1 150389106 5311342 1342856..1344283 1 NC_009633.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 1344283 5311342 Amet_1291 Alkaliphilus metalliredigens QYMF glucuronate isomerase YP_001319155.1 1342856 D 293826 CDS YP_001319156.1 150389107 5311343 1344324..1345391 1 NC_009633.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 1345391 5311343 Amet_1292 Alkaliphilus metalliredigens QYMF mannonate dehydratase YP_001319156.1 1344324 D 293826 CDS YP_001319157.1 150389108 5311344 1345470..1347086 1 NC_009633.1 PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: mta:Moth_0429 mannitol dehydrogenase; mannitol dehydrogenase domain-containing protein 1347086 5311344 Amet_1293 Alkaliphilus metalliredigens QYMF mannitol dehydrogenase domain-containing protein YP_001319157.1 1345470 D 293826 CDS YP_001319158.1 150389109 5311345 1347178..1347849 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bha:BH1062 transcriptional regulator (GntR family); GntR family transcriptional regulator 1347849 5311345 Amet_1294 Alkaliphilus metalliredigens QYMF GntR family transcriptional regulator YP_001319158.1 1347178 D 293826 CDS YP_001319159.1 150389110 5311346 complement(1347905..1348519) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1707 ABC transporter ATP-binding protein; ABC transporter-like protein 1348519 5311346 Amet_1295 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319159.1 1347905 R 293826 CDS YP_001319160.1 150389111 5311347 complement(1348710..1348910) 1 NC_009633.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: lwe:lwe2036 cold shock-like protein; cold-shock DNA-binding domain-containing protein 1348910 5311347 Amet_1296 Alkaliphilus metalliredigens QYMF cold-shock DNA-binding domain-containing protein YP_001319160.1 1348710 R 293826 CDS YP_001319161.1 150389112 5311348 1349166..1349660 1 NC_009633.1 KEGG: oih:OB1065 hypothetical protein; hypothetical protein 1349660 5311348 Amet_1297 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319161.1 1349166 D 293826 CDS YP_001319162.1 150389113 5311349 1349805..1351019 1 NC_009633.1 PFAM: beta-lactamase domain protein; KEGG: tte:TTE2430 predicted hydrolase of metallo-beta-lactamase fold; beta-lactamase domain-containing protein 1351019 5311349 Amet_1298 Alkaliphilus metalliredigens QYMF beta-lactamase domain-containing protein YP_001319162.1 1349805 D 293826 CDS YP_001319163.1 150389114 5311350 1351038..1351238 1 NC_009633.1 KEGG: tte:TTE2431 hypothetical protein; hypothetical protein 1351238 5311350 Amet_1299 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319163.1 1351038 D 293826 CDS YP_001319164.1 150389115 5311351 complement(1351704..1351883) 1 NC_009633.1 KEGG: cth:Cthe_0921 hypothetical protein; hypothetical protein 1351883 5311351 Amet_1300 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319164.1 1351704 R 293826 CDS YP_001319165.1 150389116 5311352 1352180..1353484 1 NC_009633.1 PFAM: glycoside hydrolase, family 3 domain protein; KEGG: cth:Cthe_0322 glycoside hydrolase, family 3-like protein; glycoside hydrolase family protein 1353484 5311352 Amet_1301 Alkaliphilus metalliredigens QYMF glycoside hydrolase family protein YP_001319165.1 1352180 D 293826 CDS YP_001319166.1 150389117 5311353 1353671..1355002 1 NC_009633.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; KEGG: chy:CHY_0704 glutamine synthetase; glutamine synthetase, type I 1355002 5311353 Amet_1302 Alkaliphilus metalliredigens QYMF glutamine synthetase, type I YP_001319166.1 1353671 D 293826 CDS YP_001319167.1 150389118 5311354 1355292..1355999 1 NC_009633.1 PFAM: response regulator receiver; KEGG: bha:BH2751 two-component response regulator; fused response regulator receiver/hypothetical protein 1355999 5311354 Amet_1303 Alkaliphilus metalliredigens QYMF fused response regulator receiver/hypothetical protein YP_001319167.1 1355292 D 293826 CDS YP_001319168.1 150389119 5311355 1356257..1357429 1 NC_009633.1 PFAM: malic protein domain protein; malic protein, NAD-binding; KEGG: bce:BC4604 NAD-dependent malic enzyme; malate dehydrogenase 1357429 5311355 Amet_1304 Alkaliphilus metalliredigens QYMF malate dehydrogenase YP_001319168.1 1356257 D 293826 CDS YP_001319169.1 150389120 5311356 1357426..1358295 1 NC_009633.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cno:NT01CX_0172 oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase; radical SAM domain-containing protein 1358295 5311356 Amet_1305 Alkaliphilus metalliredigens QYMF radical SAM domain-containing protein YP_001319169.1 1357426 D 293826 CDS YP_001319170.1 150389121 5311357 1358527..1358991 1 NC_009633.1 hypothetical protein 1358991 5311357 Amet_1306 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319170.1 1358527 D 293826 CDS YP_001319171.1 150389122 5311358 1359530..1361404 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase; transposase, IS4 family protein 1361404 5311358 Amet_1307 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001319171.1 1359530 D 293826 CDS YP_001319172.1 150389123 5311360 1362943..1363464 1 NC_009633.1 hypothetical protein 1363464 5311360 Amet_1309 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319172.1 1362943 D 293826 CDS YP_001319173.1 150389124 5311361 1363730..1363945 1 NC_009633.1 hypothetical protein 1363945 5311361 Amet_1310 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319173.1 1363730 D 293826 CDS YP_001319174.1 150389125 5311362 complement(1364039..1364269) 1 NC_009633.1 hypothetical protein 1364269 5311362 Amet_1311 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319174.1 1364039 R 293826 CDS YP_001319175.1 150389126 5311363 complement(1364315..1366189) 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase; transposase, IS4 family protein 1366189 5311363 Amet_1312 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001319175.1 1364315 R 293826 CDS YP_001319176.1 150389127 5311364 complement(1366339..1366710) 1 NC_009633.1 hypothetical protein 1366710 5311364 Amet_1313 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319176.1 1366339 R 293826 CDS YP_001319177.1 150389128 5311366 1367159..1367572 1 NC_009633.1 KEGG: dsy:DSY4612 hypothetical protein; hypothetical protein 1367572 5311366 Amet_1315 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319177.1 1367159 D 293826 CDS YP_001319178.1 150389129 5311368 1368313..1369914 1 NC_009633.1 TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: tte:TTE0176 uncharacterized membrane protein, putative virulence factor; integral membrane protein MviN 1369914 5311368 Amet_1317 Alkaliphilus metalliredigens QYMF integral membrane protein MviN YP_001319178.1 1368313 D 293826 CDS YP_001319179.1 150389130 5311369 1369934..1370320 1 NC_009633.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: dsy:DSY3258 hypothetical protein; MazG nucleotide pyrophosphohydrolase 1370320 5311369 Amet_1318 Alkaliphilus metalliredigens QYMF MazG nucleotide pyrophosphohydrolase YP_001319179.1 1369934 D 293826 CDS YP_001319180.1 150389131 5311370 complement(1370383..1371393) 1 NC_009633.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: cac:CAC0972 isocitrate dehydrogenase; isocitrate dehydrogenase (NAD(+)) 1371393 5311370 Amet_1319 Alkaliphilus metalliredigens QYMF isocitrate dehydrogenase (NAD(+)) YP_001319180.1 1370383 R 293826 CDS YP_001319181.1 150389132 5311371 complement(1371394..1373331) 1 NC_009633.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1373331 5311371 Amet_1320 Alkaliphilus metalliredigens QYMF aconitate hydratase YP_001319181.1 1371394 R 293826 CDS YP_001319182.1 150389133 5311372 complement(1373366..1374508) 1 NC_009633.1 in Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis; trans-homoaconitate synthase 1374508 aksA 5311372 aksA Alkaliphilus metalliredigens QYMF trans-homoaconitate synthase YP_001319182.1 1373366 R 293826 CDS YP_001319183.1 150389134 5311373 1374797..1374997 1 NC_009633.1 hypothetical protein 1374997 5311373 Amet_1322 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319183.1 1374797 D 293826 CDS YP_001319184.1 150389135 5311374 1375043..1375417 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; protein of unknown function UPF0074; KEGG: gka:GK1620 transcriptional regulator (GntR family); regulatory protein GntR 1375417 5311374 Amet_1323 Alkaliphilus metalliredigens QYMF regulatory protein GntR YP_001319184.1 1375043 D 293826 CDS YP_001319185.1 150389136 5311375 1375419..1376318 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK1621 ABC transporter (ATP-binding protein); ABC transporter-like protein 1376318 5311375 Amet_1324 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319185.1 1375419 D 293826 CDS YP_001319186.1 150389137 5311376 1376293..1378275 1 NC_009633.1 KEGG: gka:GK1622 hypothetical protein; hypothetical protein 1378275 5311376 Amet_1325 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319186.1 1376293 D 293826 CDS YP_001319187.1 150389138 5311377 complement(1378541..1379296) 1 NC_009633.1 TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0440 phosphonate transport system ATP-binding protein; phosphonate ABC transporter ATPase 1379296 5311377 Amet_1326 Alkaliphilus metalliredigens QYMF phosphonate ABC transporter ATPase YP_001319187.1 1378541 R 293826 CDS YP_001319188.1 150389139 5311378 complement(1379299..1380105) 1 NC_009633.1 TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pau:PA14_20330 phosphonate ABC tranporter permease protein; phosphonate ABC transporter inner membrane protein 1380105 5311378 Amet_1327 Alkaliphilus metalliredigens QYMF phosphonate ABC transporter inner membrane protein YP_001319188.1 1379299 R 293826 CDS YP_001319189.1 150389140 5311379 complement(1380112..1381020) 1 NC_009633.1 TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: maq:Maqu_3992 phosphonate ABC transporter, periplasmic phosphonate-binding protein; phosphonate ABC transporter periplasmic phosphonate-binding protein 1381020 5311379 Amet_1328 Alkaliphilus metalliredigens QYMF phosphonate ABC transporter periplasmic phosphonate-binding protein YP_001319189.1 1380112 R 293826 CDS YP_001319190.1 150389141 5311380 1381396..1382079 1 NC_009633.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: mta:Moth_1390 cytoplasmic chaperone TorD; cytoplasmic chaperone TorD family protein 1382079 5311380 Amet_1329 Alkaliphilus metalliredigens QYMF cytoplasmic chaperone TorD family protein YP_001319190.1 1381396 D 293826 CDS YP_001319191.1 150389142 5311381 1382136..1384700 1 NC_009633.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sth:STH713 anaerobic dimethyl sulfoxide reductase subunit A; molybdopterin oxidoreductase 1384700 5311381 Amet_1330 Alkaliphilus metalliredigens QYMF molybdopterin oxidoreductase YP_001319191.1 1382136 D 293826 CDS YP_001319192.1 150389143 5311382 1384797..1385330 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mta:Moth_1388 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 1385330 5311382 Amet_1331 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001319192.1 1384797 D 293826 CDS YP_001319193.1 150389144 5311383 1385371..1386447 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: chy:CHY_0869 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 1386447 5311383 Amet_1332 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001319193.1 1385371 D 293826 CDS YP_001319194.1 150389145 5311384 1386618..1387286 1 NC_009633.1 KEGG: dsy:DSY4458 hypothetical protein; hypothetical protein 1387286 5311384 Amet_1333 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319194.1 1386618 D 293826 CDS YP_001319195.1 150389146 5311385 1387519..1388760 1 NC_009633.1 PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dsy:DSY2873 hypothetical protein; hypothetical protein 1388760 5311385 Amet_1334 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319195.1 1387519 D 293826 CDS YP_001319196.1 150389147 5311386 1388808..1390403 1 NC_009633.1 KEGG: llm:llmg_1314 conserved hypothetical protein; hypothetical protein 1390403 5311386 Amet_1335 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319196.1 1388808 D 293826 CDS YP_001319197.1 150389148 5311387 complement(1390472..1390996) 1 NC_009633.1 hypothetical protein 1390996 5311387 Amet_1336 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319197.1 1390472 R 293826 CDS YP_001319198.1 150389149 5311388 complement(1391136..1391624) 1 NC_009633.1 KEGG: dsy:DSY0802 hypothetical protein; hypothetical protein 1391624 5311388 Amet_1337 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319198.1 1391136 R 293826 CDS YP_001319199.1 150389150 5311390 1391991..1392593 1 NC_009633.1 PFAM: regulatory protein, TetR; KEGG: mmp:MMP0840 transcriptional regulator, TetR family member; TetR family transcriptional regulator 1392593 5311390 Amet_1339 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001319199.1 1391991 D 293826 CDS YP_001319200.1 150389151 5311391 1392700..1393890 1 NC_009633.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cno:NT01CX_1548 HlyD family secretion protein, putative; RND family efflux transporter MFP subunit 1393890 5311391 Amet_1340 Alkaliphilus metalliredigens QYMF RND family efflux transporter MFP subunit YP_001319200.1 1392700 D 293826 CDS YP_001319201.1 150389152 5311392 1393904..1396975 1 NC_009633.1 PFAM: acriflavin resistance protein; KEGG: dsy:DSY2068 hypothetical protein; acriflavin resistance protein 1396975 5311392 Amet_1341 Alkaliphilus metalliredigens QYMF acriflavin resistance protein YP_001319201.1 1393904 D 293826 CDS YP_001319202.1 150389153 5311394 1397511..1398755 1 NC_009633.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cno:NT01CX_1509 integral membrane protein with CBS domains; hypothetical protein 1398755 5311394 Amet_1343 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319202.1 1397511 D 293826 CDS YP_001319203.1 150389154 5311395 1398991..1399254 1 NC_009633.1 hypothetical protein 1399254 5311395 Amet_1344 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319203.1 1398991 D 293826 CDS YP_001319204.1 150389155 5311396 complement(1399318..1400649) 1 NC_009633.1 PFAM: aminotransferase, class V; KEGG: dsy:DSY0801 hypothetical protein; cysteine desulfurase 1400649 5311396 Amet_1345 Alkaliphilus metalliredigens QYMF cysteine desulfurase YP_001319204.1 1399318 R 293826 CDS YP_001319205.1 150389156 5311397 complement(1400775..1401284) 1 NC_009633.1 PFAM: Ferritin, Dps family protein; KEGG: chy:CHY_0102 ferritin; Ferritin, Dps family protein 1401284 5311397 Amet_1346 Alkaliphilus metalliredigens QYMF Ferritin, Dps family protein YP_001319205.1 1400775 R 293826 CDS YP_001319206.1 150389157 5311398 1401685..1402566 1 NC_009633.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: cac:CAC0698 predicted hydrolase of the HAD superfamily; cof family hydrolase 1402566 5311398 Amet_1347 Alkaliphilus metalliredigens QYMF cof family hydrolase YP_001319206.1 1401685 D 293826 CDS YP_001319207.1 150389158 5311399 1402808..1404256 1 NC_009633.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC01522 fumarate reductase flavoprotein; flavocytochrome c 1404256 5311399 Amet_1348 Alkaliphilus metalliredigens QYMF flavocytochrome c YP_001319207.1 1402808 D 293826 CDS YP_001319208.1 150389159 5311400 1404524..1405333 1 NC_009633.1 PFAM: PfkB domain protein; KEGG: yhfQ; putative kinase; ribokinase-like domain-containing protein 1405333 5311400 Amet_1349 Alkaliphilus metalliredigens QYMF ribokinase-like domain-containing protein YP_001319208.1 1404524 D 293826 CDS YP_001319209.1 150389160 5311401 1405434..1405829 1 NC_009633.1 hypothetical protein 1405829 5311401 Amet_1350 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319209.1 1405434 D 293826 CDS YP_001319210.1 150389161 5311402 1405886..1406803 1 NC_009633.1 KEGG: cpe:CPE1290 hypothetical protein; hypothetical protein 1406803 5311402 Amet_1351 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319210.1 1405886 D 293826 CDS YP_001319211.1 150389162 5311403 1406947..1408224 1 NC_009633.1 KEGG: cpf:CPF_1917 CapA domain protein; CapA domain-containing protein 1408224 5311403 Amet_1352 Alkaliphilus metalliredigens QYMF CapA domain-containing protein YP_001319211.1 1406947 D 293826 CDS YP_001319212.1 150389163 5311404 1408435..1409955 1 NC_009633.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: bha:BH1513 hypothetical protein; xanthine/uracil/vitamin C permease 1409955 5311404 Amet_1353 Alkaliphilus metalliredigens QYMF xanthine/uracil/vitamin C permease YP_001319212.1 1408435 D 293826 CDS YP_001319213.1 150389164 5311405 1410254..1411363 1 NC_009633.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 1411363 gcvT 5311405 gcvT Alkaliphilus metalliredigens QYMF glycine cleavage system aminomethyltransferase T YP_001319213.1 1410254 D 293826 CDS YP_001319214.1 150389165 5311406 1411388..1411771 1 NC_009633.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 1411771 5311406 Amet_1355 Alkaliphilus metalliredigens QYMF glycine cleavage system protein H YP_001319214.1 1411388 D 293826 CDS YP_001319215.1 150389166 5311407 1411773..1413116 1 NC_009633.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 1413116 5311407 Amet_1356 Alkaliphilus metalliredigens QYMF glycine dehydrogenase subunit 1 YP_001319215.1 1411773 D 293826 CDS YP_001319216.1 150389167 5311408 1413113..1414573 1 NC_009633.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 1414573 5311408 Amet_1357 Alkaliphilus metalliredigens QYMF glycine dehydrogenase subunit 2 YP_001319216.1 1413113 D 293826 CDS YP_001319217.1 150389168 5311409 1415263..1419567 1 NC_009633.1 TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: cth:Cthe_1329 putative CoA-substrate-specific enzyme activase; putative CoA-substrate-specific enzyme activase 1419567 5311409 Amet_1358 Alkaliphilus metalliredigens QYMF putative CoA-substrate-specific enzyme activase YP_001319217.1 1415263 D 293826 CDS YP_001319218.1 150389169 5311410 complement(1419653..1420213) 1 NC_009633.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: ctc:CTC01607 hypothetical protein; hemerythrin HHE cation binding domain-containing protein 1420213 5311410 Amet_1359 Alkaliphilus metalliredigens QYMF hemerythrin HHE cation binding domain-containing protein YP_001319218.1 1419653 R 293826 CDS YP_001319219.1 150389170 5311411 1420403..1421173 1 NC_009633.1 KEGG: lwe:lwe1368 hypothetical protein; metal-dependent protein-like protein 1421173 5311411 Amet_1360 Alkaliphilus metalliredigens QYMF metal-dependent protein-like protein YP_001319219.1 1420403 D 293826 CDS YP_001319220.1 150389171 5311412 complement(1421206..1421559) 1 NC_009633.1 KEGG: cno:NT01CX_0507 hypothetical protein; hypothetical protein 1421559 5311412 Amet_1361 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319220.1 1421206 R 293826 CDS YP_001319221.1 150389172 5311413 complement(1421720..1422376) 1 NC_009633.1 KEGG: cpe:CPE1479 hypothetical protein; hypothetical protein 1422376 5311413 Amet_1362 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319221.1 1421720 R 293826 CDS YP_001319222.1 150389173 5311414 1422607..1422855 1 NC_009633.1 hypothetical protein 1422855 5311414 Amet_1363 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319222.1 1422607 D 293826 CDS YP_001319223.1 150389174 5311415 1423040..1423267 1 NC_009633.1 PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: sth:STH1431 small acid-soluble spore protein; alpha/beta type small acid-soluble spore protein 1423267 5311415 Amet_1364 Alkaliphilus metalliredigens QYMF alpha/beta type small acid-soluble spore protein YP_001319223.1 1423040 D 293826 CDS YP_001319224.1 150389175 5311416 1423511..1424644 1 NC_009633.1 PFAM: cell cycle protein; KEGG: tte:TTE0905 Bacterial cell division membrane protein; cell cycle protein 1424644 5311416 Amet_1365 Alkaliphilus metalliredigens QYMF cell cycle protein YP_001319224.1 1423511 D 293826 CDS YP_001319225.1 150389176 5311417 1424862..1426220 1 NC_009633.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: cth:Cthe_1939 magnesium transporter; magnesium transporter 1426220 5311417 Amet_1366 Alkaliphilus metalliredigens QYMF magnesium transporter YP_001319225.1 1424862 D 293826 CDS YP_001319226.1 150389177 5311418 1426342..1427025 1 NC_009633.1 TIGRFAM: Spore cortex-lytic enzyme SleB; PFAM: Peptidoglycan-binding domain 1 protein; cell wall hydrolase, SleB; KEGG: sth:STH2958 spore cortex-lytic enzyme precursor; spore cortex-lytic enzyme SleB 1427025 5311418 Amet_1367 Alkaliphilus metalliredigens QYMF spore cortex-lytic enzyme SleB YP_001319226.1 1426342 D 293826 CDS YP_001319227.1 150389178 5311419 1427043..1428392 1 NC_009633.1 TIGRFAM: Spore germination YpeB; PFAM: Propeptide, PepSY amd peptidase M4; KEGG: cth:Cthe_2416 propeptide, PepSY amd peptidase M4; spore germination YpeB 1428392 5311419 Amet_1368 Alkaliphilus metalliredigens QYMF spore germination YpeB YP_001319227.1 1427043 D 293826 CDS YP_001319228.1 150389179 5311420 complement(1428625..1429479) 1 NC_009633.1 KEGG: bce:BC0877 IG hypothetical 16724; hypothetical protein 1429479 5311420 Amet_1369 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319228.1 1428625 R 293826 CDS YP_001319229.1 150389180 5311421 1429864..1430496 1 NC_009633.1 PFAM: Collagen triple helix repeat; KEGG: gka:GK2100 hypothetical protein; triple helix repeat-containing collagen 1430496 5311421 Amet_1370 Alkaliphilus metalliredigens QYMF triple helix repeat-containing collagen YP_001319229.1 1429864 D 293826 CDS YP_001319230.1 150389181 5311422 1430693..1431061 1 NC_009633.1 KEGG: cth:Cthe_2090 hypothetical protein; hypothetical protein 1431061 5311422 Amet_1371 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319230.1 1430693 D 293826 CDS YP_001319231.1 150389182 5311423 complement(1431076..1432440) 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: wol:WD0563 transposase, IS4 family; transposase, IS4 family protein 1432440 5311423 Amet_1372 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001319231.1 1431076 R 293826 CDS YP_001319232.1 150389183 5311424 1432643..1433455 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: ppd:Ppro_0307 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 1433455 5311424 Amet_1373 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001319232.1 1432643 D 293826 CDS YP_001319233.1 150389184 5311425 complement(1433525..1434115) 1 NC_009633.1 hypothetical protein 1434115 5311425 Amet_1374 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319233.1 1433525 R 293826 CDS YP_001319234.1 150389185 5311426 1434336..1435688 1 NC_009633.1 PFAM: phosphoglucose isomerase (PGI); KEGG: btl:BALH_4440 glucose-6-phosphate isomerase; glucose-6-phosphate isomerase 1435688 5311426 Amet_1375 Alkaliphilus metalliredigens QYMF glucose-6-phosphate isomerase YP_001319234.1 1434336 D 293826 CDS YP_001319235.1 150389186 5311427 1435896..1436735 1 NC_009633.1 TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase; KEGG: cno:NT01CX_0654 glutamate racemase; glutamate racemase 1436735 5311427 Amet_1376 Alkaliphilus metalliredigens QYMF glutamate racemase YP_001319235.1 1435896 D 293826 CDS YP_001319236.1 150389187 5311428 1436771..1438450 1 NC_009633.1 PFAM: GAF domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type, transmembrane region; KEGG: gme:Gmet_2698 histidine kinase internal region; signal transduction histidine kinase LytS 1438450 5311428 Amet_1377 Alkaliphilus metalliredigens QYMF signal transduction histidine kinase LytS YP_001319236.1 1436771 D 293826 CDS YP_001319237.1 150389188 5311429 1438523..1439293 1 NC_009633.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: mta:Moth_1964 transcriptional regulator, LytR/AlgR family; LytTR family two component transcriptional regulator 1439293 5311429 Amet_1378 Alkaliphilus metalliredigens QYMF LytTR family two component transcriptional regulator YP_001319237.1 1438523 D 293826 CDS YP_001319238.1 150389189 5311430 1439473..1439967 1 NC_009633.1 KEGG: nph:NP1830A hypothetical protein; hypothetical protein 1439967 5311430 Amet_1379 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319238.1 1439473 D 293826 CDS YP_001319239.1 150389190 5311431 1440002..1441609 1 NC_009633.1 PFAM: carbon starvation protein CstA; KEGG: bcl:ABC1450 carbon starvation-induced protein; carbon starvation protein CstA 1441609 5311431 Amet_1380 Alkaliphilus metalliredigens QYMF carbon starvation protein CstA YP_001319239.1 1440002 D 293826 CDS YP_001319240.1 150389191 5311432 1441728..1441964 1 NC_009633.1 KEGG: mta:Moth_2201 hypothetical protein; hypothetical protein 1441964 5311432 Amet_1381 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319240.1 1441728 D 293826 CDS YP_001319241.1 150389192 5311433 complement(1442049..1443395) 1 NC_009633.1 TIGRFAM: dipeptidase, putative; PFAM: peptidase M20; KEGG: ppr:PBPRA2746 hypothetical protein; dipeptidase 1443395 5311433 Amet_1382 Alkaliphilus metalliredigens QYMF dipeptidase YP_001319241.1 1442049 R 293826 CDS YP_001319242.1 150389193 5311434 1443608..1445161 1 NC_009633.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: ctc:CTC00197 stage V sporulation protein B; polysaccharide biosynthesis protein 1445161 5311434 Amet_1383 Alkaliphilus metalliredigens QYMF polysaccharide biosynthesis protein YP_001319242.1 1443608 D 293826 CDS YP_001319243.1 150389194 5311435 1445281..1445790 1 NC_009633.1 PFAM: FMN-binding domain protein; KEGG: tte:TTE2480 major membrane immunogen precursor; FMN-binding domain-containing protein 1445790 5311435 Amet_1384 Alkaliphilus metalliredigens QYMF FMN-binding domain-containing protein YP_001319243.1 1445281 D 293826 CDS YP_001319244.1 150389195 5311436 1445799..1445999 1 NC_009633.1 hypothetical protein 1445999 5311436 Amet_1385 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319244.1 1445799 D 293826 CDS YP_001319245.1 150389196 5311437 1445990..1446154 1 NC_009633.1 hypothetical protein 1446154 5311437 Amet_1386 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319245.1 1445990 D 293826 CDS YP_001319246.1 150389197 5311438 1446208..1448340 1 NC_009633.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1448340 5311438 Amet_1387 Alkaliphilus metalliredigens QYMF anaerobic ribonucleoside triphosphate reductase YP_001319246.1 1446208 D 293826 CDS YP_001319247.1 150389198 5311439 1448356..1449039 1 NC_009633.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: sat:SYN_03523 pyruvate formate-lyase activating enzyme; anaerobic ribonucleoside-triphosphate reductase activating protein 1449039 5311439 Amet_1388 Alkaliphilus metalliredigens QYMF anaerobic ribonucleoside-triphosphate reductase activating protein YP_001319247.1 1448356 D 293826 CDS YP_001319248.1 150389199 5311440 complement(1449213..1449623) 1 NC_009633.1 hypothetical protein 1449623 5311440 Amet_1389 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319248.1 1449213 R 293826 CDS YP_001319249.1 150389200 5311441 complement(1449795..1450274) 1 NC_009633.1 PFAM: protein of unknown function DUF606; KEGG: bce:BC3451 hypothetical membrane spanning protein; hypothetical protein 1450274 5311441 Amet_1390 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319249.1 1449795 R 293826 CDS YP_001319250.1 150389201 5311442 complement(1450286..1450708) 1 NC_009633.1 KEGG: btl:BALH_3104 possible membrane-spanning protein; putative membrane-spanning protein 1450708 5311442 Amet_1391 Alkaliphilus metalliredigens QYMF putative membrane-spanning protein YP_001319250.1 1450286 R 293826 CDS YP_001319251.1 150389202 5311443 1450826..1451521 1 NC_009633.1 PFAM: cyclic nucleotide-binding; KEGG: bce:BC3449 catabolite gene activator; cyclic nucleotide-binding protein 1451521 5311443 Amet_1392 Alkaliphilus metalliredigens QYMF cyclic nucleotide-binding protein YP_001319251.1 1450826 D 293826 CDS YP_001319252.1 150389203 5311444 1452473..1453693 1 NC_009633.1 KEGG: cph:Cpha266_0062 NADPH-dependent FMN reductase; hypothetical protein 1453693 5311444 Amet_1393 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319252.1 1452473 D 293826 CDS YP_001319253.1 150389204 5311445 1453973..1455931 1 NC_009633.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC00811 fumarate reductase flavoprotein subunit precursor; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 1455931 5311445 Amet_1394 Alkaliphilus metalliredigens QYMF fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_001319253.1 1453973 D 293826 CDS YP_001319254.1 150389205 5311446 complement(1455989..1456774) 1 NC_009633.1 PFAM: regulatory protein, MerR; KEGG: dsy:DSY2796 hypothetical protein; MerR family transcriptional regulator 1456774 5311446 Amet_1395 Alkaliphilus metalliredigens QYMF MerR family transcriptional regulator YP_001319254.1 1455989 R 293826 CDS YP_001319255.1 150389206 5311447 1457235..1457501 1 NC_009633.1 hypothetical protein 1457501 5311447 Amet_1396 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319255.1 1457235 D 293826 CDS YP_001319256.1 150389207 5311448 1457613..1458065 1 NC_009633.1 hypothetical protein 1458065 5311448 Amet_1397 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319256.1 1457613 D 293826 CDS YP_001319257.1 150389208 5311449 complement(1458191..1459192) 1 NC_009633.1 PFAM: NMT1/THI5 like; KEGG: ctc:CTC00407 ABC transporter substrate-binding protein; NMT1/THI5 like protein 1459192 5311449 Amet_1398 Alkaliphilus metalliredigens QYMF NMT1/THI5 like protein YP_001319257.1 1458191 R 293826 CDS YP_001319258.1 150389209 5311450 1459387..1459707 1 NC_009633.1 hypothetical protein 1459707 5311450 Amet_1399 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319258.1 1459387 D 293826 CDS YP_001319259.1 150389210 5311451 1459807..1460349 1 NC_009633.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ctc:CTC00117 phosphatidylglycerophosphate synthase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1460349 5311451 Amet_1400 Alkaliphilus metalliredigens QYMF CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001319259.1 1459807 D 293826 CDS YP_001319260.1 150389211 5311452 1460803..1460970 1 NC_009633.1 hypothetical protein 1460970 5311452 Amet_1401 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319260.1 1460803 D 293826 CDS YP_001319261.1 150389212 5311453 1460984..1463638 1 NC_009633.1 TIGRFAM: valyl-tRNA synthetase; KEGG: cth:Cthe_0324 valyl-tRNA synthetase; valyl-tRNA synthetase 1463638 5311453 Amet_1402 Alkaliphilus metalliredigens QYMF valyl-tRNA synthetase YP_001319261.1 1460984 D 293826 CDS YP_001319262.1 150389213 5311454 1463848..1465167 1 NC_009633.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; KEGG: tte:TTE0783 Folylpolyglutamate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 1465167 5311454 Amet_1403 Alkaliphilus metalliredigens QYMF bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_001319262.1 1463848 D 293826 CDS YP_001319263.1 150389214 5311455 1465261..1466145 1 NC_009633.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: tte:TTE0105 predicted Co/Zn/Cd cation transporters; cation diffusion facilitator family transporter 1466145 5311455 Amet_1404 Alkaliphilus metalliredigens QYMF cation diffusion facilitator family transporter YP_001319263.1 1465261 D 293826 CDS YP_001319264.1 150389215 5311456 1466463..1467527 1 NC_009633.1 PFAM: phage integrase family protein; KEGG: gfo:orf943 phage integrase family protein; phage integrase family protein 1467527 5311456 Amet_1405 Alkaliphilus metalliredigens QYMF phage integrase family protein YP_001319264.1 1466463 D 293826 CDS YP_001319265.1 150389216 5311457 1467652..1468617 1 NC_009633.1 KEGG: sav:SAV2216 hypothetical protein; hypothetical protein 1468617 5311457 Amet_1406 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319265.1 1467652 D 293826 CDS YP_001319266.1 150389217 5311458 1468643..1468825 1 NC_009633.1 hypothetical protein 1468825 5311458 Amet_1407 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319266.1 1468643 D 293826 CDS YP_001319267.1 150389218 5311459 1468844..1469791 1 NC_009633.1 KEGG: rru:Rru_A0261 hypothetical protein; hypothetical protein 1469791 5311459 Amet_1408 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319267.1 1468844 D 293826 CDS YP_001319268.1 150389219 5311460 1470537..1470971 1 NC_009633.1 KEGG: mba:Mbar_A1733 reverse transcriptase; hypothetical protein 1470971 5311460 Amet_1409 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319268.1 1470537 D 293826 CDS YP_001319269.1 150389220 5311461 complement(1470980..1473037) 1 NC_009633.1 PFAM: Resolvase, N-terminal domain; KEGG: fra:Francci3_2088 recombinase; resolvase domain-containing protein 1473037 5311461 Amet_1410 Alkaliphilus metalliredigens QYMF resolvase domain-containing protein YP_001319269.1 1470980 R 293826 CDS YP_001319270.1 150389221 5311462 1473616..1474731 1 NC_009633.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: mbu:Mbur_2039 RNA-directed DNA polymerase; maturase-specific domain-containing protein 1474731 5311462 Amet_1411 Alkaliphilus metalliredigens QYMF maturase-specific domain-containing protein YP_001319270.1 1473616 D 293826 CDS YP_001319271.1 150389222 5311463 1475151..1475789 1 NC_009633.1 hypothetical protein 1475789 5311463 Amet_1412 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319271.1 1475151 D 293826 CDS YP_001319272.1 150389223 5311464 1476036..1476500 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC3374 predicted acetyltransferase; N-acetyltransferase GCN5 1476500 5311464 Amet_1413 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001319272.1 1476036 D 293826 CDS YP_001319273.1 150389224 5311465 1476799..1477410 1 NC_009633.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cac:CAC2827 S-adenosylmethionine-dependent methyltransferase; type 12 methyltransferase 1477410 5311465 Amet_1414 Alkaliphilus metalliredigens QYMF type 12 methyltransferase YP_001319273.1 1476799 D 293826 CDS YP_001319274.1 150389225 5311466 1477685..1478203 1 NC_009633.1 KEGG: mmp:MMP0794 hypothetical protein; hypothetical protein 1478203 5311466 Amet_1415 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319274.1 1477685 D 293826 CDS YP_001319275.1 150389226 5311467 1478284..1479021 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mhu:Mhun_1280 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 1479021 5311467 Amet_1416 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001319275.1 1478284 D 293826 CDS YP_001319276.1 150389227 5311468 1479231..1480121 1 NC_009633.1 hypothetical protein 1480121 5311468 Amet_1417 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319276.1 1479231 D 293826 CDS YP_001319277.1 150389228 5311469 1480302..1481129 1 NC_009633.1 PFAM: beta-lactamase domain protein; KEGG: cpf:CPF_1168 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 1481129 5311469 Amet_1418 Alkaliphilus metalliredigens QYMF beta-lactamase domain-containing protein YP_001319277.1 1480302 D 293826 CDS YP_001319278.1 150389229 5311470 1481202..1481675 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ljo:LJ1236 hypothetical protein; N-acetyltransferase GCN5 1481675 5311470 Amet_1419 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001319278.1 1481202 D 293826 CDS YP_001319279.1 150389230 5311471 1481804..1482256 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bth:BT_1464 putative acetyltransferase, (GNAT) family; N-acetyltransferase GCN5 1482256 5311471 Amet_1420 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001319279.1 1481804 D 293826 CDS YP_001319280.1 150389231 5311472 1482535..1483119 1 NC_009633.1 PFAM: ThiJ/PfpI domain protein; KEGG: smu:SMU.1682c conserved hypothetical protein; possible intracellular protease; ThiJ/PfpI domain-containing protein 1483119 5311472 Amet_1421 Alkaliphilus metalliredigens QYMF ThiJ/PfpI domain-containing protein YP_001319280.1 1482535 D 293826 CDS YP_001319281.1 150389232 5311473 1483505..1484401 1 NC_009633.1 PFAM: pentapeptide repeat protein; KEGG: cac:CAC0073 uncharacterized protein, ortholog of YYBG B.subtilis; pentapeptide repeat-containing protein 1484401 5311473 Amet_1422 Alkaliphilus metalliredigens QYMF pentapeptide repeat-containing protein YP_001319281.1 1483505 D 293826 CDS YP_001319282.1 150389233 5311474 1484421..1484969 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bld:BLi00525 YdaF; N-acetyltransferase GCN5 1484969 5311474 Amet_1423 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001319282.1 1484421 D 293826 CDS YP_001319283.1 150389234 5311476 1485920..1486087 1 NC_009633.1 hypothetical protein 1486087 5311476 Amet_1425 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319283.1 1485920 D 293826 CDS YP_001319284.1 150389235 5311477 1486173..1486991 1 NC_009633.1 PFAM: VanW family protein; KEGG: bce:BC2985 vancomycin B-type resistance protein VanW; VanW family protein 1486991 5311477 Amet_1426 Alkaliphilus metalliredigens QYMF VanW family protein YP_001319284.1 1486173 D 293826 CDS YP_001319285.1 150389236 5311478 1487004..1487234 1 NC_009633.1 hypothetical protein 1487234 5311478 Amet_1427 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319285.1 1487004 D 293826 CDS YP_001319286.1 150389237 5311479 1487265..1488176 1 NC_009633.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: lac:LBA0355 transcriptional regulator; helix-turn-helix domain-containing protein 1488176 5311479 Amet_1428 Alkaliphilus metalliredigens QYMF helix-turn-helix domain-containing protein YP_001319286.1 1487265 D 293826 CDS YP_001319287.1 150389238 5311480 1488334..1488768 1 NC_009633.1 hypothetical protein 1488768 5311480 Amet_1429 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319287.1 1488334 D 293826 CDS YP_001319288.1 150389239 5311481 1489248..1490063 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mst:Msp_1385 hypothetical protein; 4Fe-4S ferredoxin 1490063 5311481 Amet_1430 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001319288.1 1489248 D 293826 CDS YP_001319289.1 150389240 5311482 1490121..1491179 1 NC_009633.1 PFAM: beta-lactamase; KEGG: btk:BT9727_2440 alkaline D-peptidase (D-stereospecific peptide hydrolase); beta-lactamase 1491179 5311482 Amet_1431 Alkaliphilus metalliredigens QYMF beta-lactamase YP_001319289.1 1490121 D 293826 CDS YP_001319290.1 150389241 5311483 1491216..1491650 1 NC_009633.1 PFAM: protein of unknown function DUF1200; KEGG: oih:OB1702 hypothetical protein; hypothetical protein 1491650 5311483 Amet_1432 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319290.1 1491216 D 293826 CDS YP_001319291.1 150389242 5311484 1491722..1492186 1 NC_009633.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: ape:APE_2540.1 putative ala-tRNApro hydrolase ProX; YbaK/prolyl-tRNA synthetase associated domain-containing protein 1492186 5311484 Amet_1433 Alkaliphilus metalliredigens QYMF YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_001319291.1 1491722 D 293826 CDS YP_001319292.1 150389243 5311485 1492387..1492947 1 NC_009633.1 PFAM: protein of unknown function DUF1697; KEGG: mca:MCA2327 hypothetical protein; hypothetical protein 1492947 5311485 Amet_1434 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319292.1 1492387 D 293826 CDS YP_001319293.1 150389244 5311486 1493144..1493533 1 NC_009633.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vpa:VPA0302 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 1493533 5311486 Amet_1435 Alkaliphilus metalliredigens QYMF glyoxalase/bleomycin resistance protein/dioxygenase YP_001319293.1 1493144 D 293826 CDS YP_001319294.1 150389245 5311487 1493617..1494129 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY3988 hypothetical protein; N-acetyltransferase GCN5 1494129 5311487 Amet_1436 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001319294.1 1493617 D 293826 CDS YP_001319295.1 150389246 5311488 1494190..1494459 1 NC_009633.1 KEGG: dsy:DSY0347 hypothetical protein; hypothetical protein 1494459 5311488 Amet_1437 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319295.1 1494190 D 293826 CDS YP_001319296.1 150389247 5311489 1494557..1495291 1 NC_009633.1 KEGG: cth:Cthe_2121 hypothetical protein; hypothetical protein 1495291 5311489 Amet_1438 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319296.1 1494557 D 293826 CDS YP_001319297.1 150389248 5311490 1495429..1496232 1 NC_009633.1 PFAM: catalytic domain of components of various dehydrogenase complexes; KEGG: bha:BH1847 hypothetical protein; dehydrogenase catalytic domain-containing protein 1496232 5311490 Amet_1439 Alkaliphilus metalliredigens QYMF dehydrogenase catalytic domain-containing protein YP_001319297.1 1495429 D 293826 CDS YP_001319298.1 150389249 5311491 1496296..1496883 1 NC_009633.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mac:MA4347 menaquinone biosynthesis methyltransferase (2-heptaprenyl-1,4-naphthoquinone methyltransferase); type 11 methyltransferase 1496883 5311491 Amet_1440 Alkaliphilus metalliredigens QYMF type 11 methyltransferase YP_001319298.1 1496296 D 293826 CDS YP_001319299.1 150389250 5311492 1497005..1498075 1 NC_009633.1 PFAM: HEAT domain containing protein; KEGG: chu:CHU_1766 conserved hypothetical protein; possible DNA alkylation repair enzyme; heat domain-containing protein 1498075 5311492 Amet_1441 Alkaliphilus metalliredigens QYMF heat domain-containing protein YP_001319299.1 1497005 D 293826 CDS YP_001319300.1 150389251 5311493 1498287..1499006 1 NC_009633.1 PFAM: phospholipid/glycerol acyltransferase; KEGG: cno:NT01CX_1393 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative; phospholipid/glycerol acyltransferase 1499006 5311493 Amet_1442 Alkaliphilus metalliredigens QYMF phospholipid/glycerol acyltransferase YP_001319300.1 1498287 D 293826 CDS YP_001319301.1 150389252 5311494 1499584..1500024 1 NC_009633.1 KEGG: cac:CA_P0152 hypothetical protein, CF-6 family; hypothetical protein 1500024 5311494 Amet_1443 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319301.1 1499584 D 293826 CDS YP_001319302.1 150389253 5311495 1500135..1500983 1 NC_009633.1 KEGG: mva:Mvan_1198 conserved hypothetical protein; hypothetical protein 1500983 5311495 Amet_1444 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319302.1 1500135 D 293826 CDS YP_001319303.1 150389254 5311496 1501112..1502878 1 NC_009633.1 PFAM: Hemerythrin HHE cation binding domain protein; Domain of unknown function DUF1858; KEGG: pgi:PG0686 hypothetical protein; hypothetical protein 1502878 5311496 Amet_1445 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319303.1 1501112 D 293826 CDS YP_001319304.1 150389255 5311497 1503127..1504785 1 NC_009633.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 1504785 5311497 Amet_1446 Alkaliphilus metalliredigens QYMF hydroxylamine reductase YP_001319304.1 1503127 D 293826 CDS YP_001319305.1 150389256 5311498 1505033..1505482 1 NC_009633.1 PFAM: UspA domain protein; KEGG: mma:MM1452 universal stress protein; UspA domain-containing protein 1505482 5311498 Amet_1447 Alkaliphilus metalliredigens QYMF UspA domain-containing protein YP_001319305.1 1505033 D 293826 CDS YP_001319306.1 150389257 5311499 1505710..1508487 1 NC_009633.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: sfu:Sfum_2209 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 1508487 5311499 Amet_1448 Alkaliphilus metalliredigens QYMF PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001319306.1 1505710 D 293826 CDS YP_001319307.1 150389258 5311500 1508758..1510746 1 NC_009633.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY3380 hypothetical protein; methyl-accepting chemotaxis sensory transducer 1510746 5311500 Amet_1449 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001319307.1 1508758 D 293826 CDS YP_001319308.1 150389259 5311501 complement(1510820..1511839) 1 NC_009633.1 PFAM: Pirin domain protein; KEGG: cac:CAC1492 uncharacterized protein, YhhW/pirin family; pirin domain-containing protein 1511839 5311501 Amet_1450 Alkaliphilus metalliredigens QYMF pirin domain-containing protein YP_001319308.1 1510820 R 293826 CDS YP_001319309.1 150389260 5311502 1512430..1514331 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bce:BC0239 ABC transporter ATP-binding protein uup; ABC transporter-like protein 1514331 5311502 Amet_1451 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319309.1 1512430 D 293826 CDS YP_001319310.1 150389261 5311503 1514714..1515292 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bat:BAS2522 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1515292 5311503 Amet_1452 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001319310.1 1514714 D 293826 CDS YP_001319311.1 150389262 5311504 1515361..1515957 1 NC_009633.1 PFAM: ThiJ/PfpI domain protein; KEGG: bca:BCE_2883 hypothetical protein; ThiJ/PfpI domain-containing protein 1515957 5311504 Amet_1453 Alkaliphilus metalliredigens QYMF ThiJ/PfpI domain-containing protein YP_001319311.1 1515361 D 293826 CDS YP_001319312.1 150389263 5311505 1516142..1516456 1 NC_009633.1 hypothetical protein 1516456 5311505 Amet_1454 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319312.1 1516142 D 293826 CDS YP_001319313.1 150389264 5311506 1516438..1516950 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC2509 predicted acetyltransferase; N-acetyltransferase GCN5 1516950 5311506 Amet_1455 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001319313.1 1516438 D 293826 CDS YP_001319314.1 150389265 5311507 1517113..1517490 1 NC_009633.1 hypothetical protein 1517490 5311507 Amet_1456 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319314.1 1517113 D 293826 CDS YP_001319315.1 150389266 5311508 1517699..1518373 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC0224 response regulator (CheY-like receiver domain and HTH DNA-binding domain); two component transcriptional regulator 1518373 5311508 Amet_1457 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001319315.1 1517699 D 293826 CDS YP_001319316.1 150389267 5311509 1518370..1519398 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; KEGG: cac:CAC0225 sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1519398 5311509 Amet_1458 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001319316.1 1518370 D 293826 CDS YP_001319317.1 150389268 5311510 1519491..1520249 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC0226 ABC transporter, ATP-binding protein; ABC transporter-like protein 1520249 5311510 Amet_1459 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319317.1 1519491 D 293826 CDS YP_001319318.1 150389269 5311511 1520246..1522228 1 NC_009633.1 PFAM: protein of unknown function DUF214; KEGG: btl:BALH_4398 ABC transporter, permease component; hypothetical protein 1522228 5311511 Amet_1460 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319318.1 1520246 D 293826 CDS YP_001319319.1 150389270 5311512 complement(1522421..1522822) 1 NC_009633.1 KEGG: swo:Swol_2182 alkyl hydroperoxide reductase; alkyl hydroperoxide reductase 1522822 5311512 Amet_1461 Alkaliphilus metalliredigens QYMF alkyl hydroperoxide reductase YP_001319319.1 1522421 R 293826 CDS YP_001319320.1 150389271 5311513 complement(1522892..1523140) 1 NC_009633.1 KEGG: swo:Swol_2181 peroxiredoxin-like protein; peroxiredoxin-like protein 1523140 5311513 Amet_1462 Alkaliphilus metalliredigens QYMF peroxiredoxin-like protein YP_001319320.1 1522892 R 293826 CDS YP_001319321.1 150389272 5311514 1523381..1523731 1 NC_009633.1 PFAM: protein of unknown function DUF134; KEGG: dsy:DSY3441 hypothetical protein; hypothetical protein 1523731 5311514 Amet_1463 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319321.1 1523381 D 293826 CDS YP_001319322.1 150389273 5311515 1523784..1524152 1 NC_009633.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: tte:TTE1893 hypothetical protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein 1524152 5311515 Amet_1464 Alkaliphilus metalliredigens QYMF dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_001319322.1 1523784 D 293826 CDS YP_001319323.1 150389274 5311516 1524139..1525011 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Cobyrinic acid a,c-diamide synthase; KEGG: dsy:DSY3440 hypothetical protein; cobyrinic acid a,c-diamide synthase 1525011 5311516 Amet_1465 Alkaliphilus metalliredigens QYMF cobyrinic acid a,c-diamide synthase YP_001319323.1 1524139 D 293826 CDS YP_001319324.1 150389275 5311517 1524989..1525849 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Cobyrinic acid a,c-diamide synthase; KEGG: dsy:DSY3439 hypothetical protein; cobyrinic acid a,c-diamide synthase 1525849 5311517 Amet_1466 Alkaliphilus metalliredigens QYMF cobyrinic acid a,c-diamide synthase YP_001319324.1 1524989 D 293826 CDS YP_001319325.1 150389276 5311518 1525884..1526240 1 NC_009633.1 PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dsy:DSY3437 hypothetical protein; dinitrogenase iron-molybdenum cofactor biosynthesis protein 1526240 5311518 Amet_1467 Alkaliphilus metalliredigens QYMF dinitrogenase iron-molybdenum cofactor biosynthesis protein YP_001319325.1 1525884 D 293826 CDS YP_001319326.1 150389277 5311519 1526249..1526719 1 NC_009633.1 KEGG: mka:MK0529 HAD family hydrolase, a fragment; HAD family hydrolase 1526719 5311519 Amet_1468 Alkaliphilus metalliredigens QYMF HAD family hydrolase YP_001319326.1 1526249 D 293826 CDS YP_001319327.1 150389278 5311520 1527194..1527943 1 NC_009633.1 PFAM: Silent information regulator protein Sir2; KEGG: oih:OB3159 transcriptional regulator; silent information regulator protein Sir2 1527943 5311520 Amet_1469 Alkaliphilus metalliredigens QYMF silent information regulator protein Sir2 YP_001319327.1 1527194 D 293826 CDS YP_001319328.1 150389279 5311522 1530189..1531742 1 NC_009633.1 PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22); integrase catalytic subunit 1531742 5311522 Amet_1471 Alkaliphilus metalliredigens QYMF integrase catalytic subunit YP_001319328.1 1530189 D 293826 CDS YP_001319329.1 150389280 5311523 1531730..1532473 1 NC_009633.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein; IstB ATP binding domain-containing protein 1532473 5311523 Amet_1472 Alkaliphilus metalliredigens QYMF IstB ATP binding domain-containing protein YP_001319329.1 1531730 D 293826 CDS YP_001319330.1 150389281 5311524 1532477..1532686 1 NC_009633.1 hypothetical protein 1532686 5311524 Amet_1473 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319330.1 1532477 D 293826 CDS YP_001319331.1 150389282 5311525 complement(1533389..1533970) 1 NC_009633.1 PFAM: ThiJ/PfpI domain protein; KEGG: bca:BCE_2883 hypothetical protein; ThiJ/PfpI domain-containing protein 1533970 5311525 Amet_1474 Alkaliphilus metalliredigens QYMF ThiJ/PfpI domain-containing protein YP_001319331.1 1533389 R 293826 CDS YP_001319332.1 150389283 5311527 1535795..1536091 1 NC_009633.1 hypothetical protein 1536091 5311527 Amet_1476 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319332.1 1535795 D 293826 CDS YP_001319333.1 150389284 5311528 complement(1536161..1537111) 1 NC_009633.1 hypothetical protein 1537111 5311528 Amet_1477 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319333.1 1536161 R 293826 CDS YP_001319334.1 150389285 5311530 1539267..1539755 1 NC_009633.1 PFAM: regulatory protein, MarR; transcriptional regulator TrmB; KEGG: bat:BAS0304 transcriptional regulator, MarR family; transcriptional regulator TrmB 1539755 5311530 Amet_1479 Alkaliphilus metalliredigens QYMF transcriptional regulator TrmB YP_001319334.1 1539267 D 293826 CDS YP_001319335.1 150389286 5311531 1539853..1541028 1 NC_009633.1 TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; KEGG: bcz:BCZK0288 arsenite-transporting ATPase; arsenite-activated ATPase ArsA 1541028 5311531 Amet_1480 Alkaliphilus metalliredigens QYMF arsenite-activated ATPase ArsA YP_001319335.1 1539853 D 293826 CDS YP_001319336.1 150389287 5311532 1541021..1541875 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mva:Mvan_0776 ABC transporter-related protein; ABC transporter-like protein 1541875 5311532 Amet_1481 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319336.1 1541021 D 293826 CDS YP_001319337.1 150389288 5311533 1541872..1542564 1 NC_009633.1 PFAM: ABC-2 type transporter; KEGG: dsy:DSY0913 hypothetical protein; ABC transporter 1542564 5311533 Amet_1482 Alkaliphilus metalliredigens QYMF ABC transporter YP_001319337.1 1541872 D 293826 CDS YP_001319338.1 150389289 5311534 1542568..1543284 1 NC_009633.1 KEGG: dsy:DSY0914 hypothetical protein; hypothetical protein 1543284 5311534 Amet_1483 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319338.1 1542568 D 293826 CDS YP_001319339.1 150389290 5311535 complement(1543383..1544201) 1 NC_009633.1 PFAM: amidinotransferase; KEGG: cpe:CPE0344 hypothetical protein; amidinotransferase 1544201 5311535 Amet_1484 Alkaliphilus metalliredigens QYMF amidinotransferase YP_001319339.1 1543383 R 293826 CDS YP_001319340.1 150389291 5311536 complement(1544537..1544929) 1 NC_009633.1 hypothetical protein 1544929 5311536 Amet_1485 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319340.1 1544537 R 293826 CDS YP_001319341.1 150389292 5311537 complement(1544922..1546181) 1 NC_009633.1 PFAM: cell wall hydrolase/autolysin; KEGG: mta:Moth_1790 copper amine oxidase-like; cell wall hydrolase/autolysin 1546181 5311537 Amet_1486 Alkaliphilus metalliredigens QYMF cell wall hydrolase/autolysin YP_001319341.1 1544922 R 293826 CDS YP_001319342.1 150389293 5311538 complement(1546178..1546630) 1 NC_009633.1 hypothetical protein 1546630 5311538 Amet_1487 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319342.1 1546178 R 293826 CDS YP_001319343.1 150389294 5311539 complement(1546792..1547298) 1 NC_009633.1 hypothetical protein 1547298 5311539 Amet_1488 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319343.1 1546792 R 293826 CDS YP_001319344.1 150389295 5311540 1547507..1548634 1 NC_009633.1 PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0779 copper amine oxidase-like protein; copper amine oxidase domain-containing protein 1548634 5311540 Amet_1489 Alkaliphilus metalliredigens QYMF copper amine oxidase domain-containing protein YP_001319344.1 1547507 D 293826 CDS YP_001319345.1 150389296 5311541 complement(1548805..1549284) 1 NC_009633.1 hypothetical protein 1549284 5311541 Amet_1490 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319345.1 1548805 R 293826 CDS YP_001319346.1 150389297 5311542 1549583..1550818 1 NC_009633.1 PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: bha:BH3693 hypothetical protein; hypothetical protein 1550818 5311542 Amet_1491 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319346.1 1549583 D 293826 CDS YP_001319347.1 150389298 5311543 1551116..1553455 1 NC_009633.1 KEGG: tte:TTE0861 hypothetical protein; hypothetical protein 1553455 5311543 Amet_1492 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319347.1 1551116 D 293826 CDS YP_001319348.1 150389299 5311546 1554284..1554475 1 NC_009633.1 hypothetical protein 1554475 5311546 Amet_1495 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319348.1 1554284 D 293826 CDS YP_001319349.1 150389300 5311547 1554645..1555280 1 NC_009633.1 PFAM: NADPH-dependent FMN reductase; KEGG: gsu:GSU0179 NADPH-dependent FMN reductase domain protein; NADPH-dependent FMN reductase 1555280 5311547 Amet_1496 Alkaliphilus metalliredigens QYMF NADPH-dependent FMN reductase YP_001319349.1 1554645 D 293826 CDS YP_001319350.1 150389301 5311548 complement(1555576..1556043) 1 NC_009633.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pfu:PF0752 thioredoxin peroxidase; alkyl hydroperoxide reductase 1556043 5311548 Amet_1497 Alkaliphilus metalliredigens QYMF alkyl hydroperoxide reductase YP_001319350.1 1555576 R 293826 CDS YP_001319351.1 150389302 5311549 1556344..1557951 1 NC_009633.1 PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0779 copper amine oxidase-like protein; copper amine oxidase domain-containing protein 1557951 5311549 Amet_1498 Alkaliphilus metalliredigens QYMF copper amine oxidase domain-containing protein YP_001319351.1 1556344 D 293826 CDS YP_001319352.1 150389303 5311550 1558431..1559972 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: swo:Swol_2451 hypothetical protein; transposase, IS4 family protein 1559972 5311550 Amet_1499 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001319352.1 1558431 D 293826 CDS YP_001319353.1 150389304 5311551 complement(1560384..1561982) 1 NC_009633.1 KEGG: nca:Noca_2212 putative ABC antibiotics transporter; putative ABC antibiotics transporter 1561982 5311551 Amet_1500 Alkaliphilus metalliredigens QYMF putative ABC antibiotics transporter YP_001319353.1 1560384 R 293826 CDS YP_001319354.1 150389305 5311552 complement(1561982..1562902) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro06063 probable ABC transporter, ATP-binding component; ABC transporter-like protein 1562902 5311552 Amet_1501 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319354.1 1561982 R 293826 CDS YP_001319355.1 150389306 5311553 complement(1563023..1563658) 1 NC_009633.1 PFAM: regulatory protein, TetR; KEGG: dsy:DSY3670 hypothetical protein; TetR family transcriptional regulator 1563658 5311553 Amet_1502 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001319355.1 1563023 R 293826 CDS YP_001319356.1 150389307 5311554 1563917..1564738 1 NC_009633.1 KEGG: bcl:ABC1535 hypothetical protein; hypothetical protein 1564738 5311554 Amet_1503 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319356.1 1563917 D 293826 CDS YP_001319357.1 150389308 5311555 1564818..1565699 1 NC_009633.1 PFAM: helix-turn-helix- domain containing protein, AraC type; transcription activator, effector binding; KEGG: bat:BAS4724 transcriptional regulator, AraC family; transcription activator, effector binding 1565699 5311555 Amet_1504 Alkaliphilus metalliredigens QYMF transcription activator, effector binding YP_001319357.1 1564818 D 293826 CDS YP_001319358.1 150389309 5311556 1565856..1566323 1 NC_009633.1 PFAM: ubiquitin-associated- domain-containing protein; KEGG: cac:CAC1297 N-terminal fragment of elongation factor Ts; ubiquitin-associated protein 1566323 5311556 Amet_1505 Alkaliphilus metalliredigens QYMF ubiquitin-associated protein YP_001319358.1 1565856 D 293826 CDS YP_001319359.1 150389310 5311557 1566498..1567181 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dsy:DSY1143 hypothetical protein; two component transcriptional regulator 1567181 5311557 Amet_1506 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001319359.1 1566498 D 293826 CDS YP_001319360.1 150389311 5311558 1567174..1568748 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE1017 sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1568748 5311558 Amet_1507 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001319360.1 1567174 D 293826 CDS YP_001319361.1 150389312 5311559 1568829..1569008 1 NC_009633.1 hypothetical protein 1569008 5311559 Amet_1508 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319361.1 1568829 D 293826 CDS YP_001319362.1 150389313 5311560 1569166..1569690 1 NC_009633.1 PFAM: formylmethanofuran dehydrogenase, subunit E region; KEGG: dsy:DSY0393 formylmethanofuran dehydrogenase subunit E; formylmethanofuran dehydrogenase subunit E 1569690 5311560 Amet_1509 Alkaliphilus metalliredigens QYMF formylmethanofuran dehydrogenase subunit E YP_001319362.1 1569166 D 293826 CDS YP_001319363.1 150389314 5311561 1569972..1570622 1 NC_009633.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 1570622 5311561 Amet_1510 Alkaliphilus metalliredigens QYMF redox-sensing transcriptional repressor Rex YP_001319363.1 1569972 D 293826 CDS YP_001319364.1 150389315 5311562 1571071..1571901 1 NC_009633.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: fnu:FN0197 methyltransferase; cyclopropane-fatty-acyl-phospholipid synthase 1571901 5311562 Amet_1511 Alkaliphilus metalliredigens QYMF cyclopropane-fatty-acyl-phospholipid synthase YP_001319364.1 1571071 D 293826 CDS YP_001319365.1 150389316 5311563 1571970..1573541 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 5; KEGG: mma:MM2460 dipeptide/oligopeptide-binding protein; extracellular solute-binding protein 1573541 5311563 Amet_1512 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001319365.1 1571970 D 293826 CDS YP_001319366.1 150389317 5311564 1573551..1574570 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY3210 hypothetical protein; binding-protein-dependent transport system inner membrane protein 1574570 5311564 Amet_1513 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001319366.1 1573551 D 293826 CDS YP_001319367.1 150389318 5311565 1574628..1575398 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY3209 hypothetical protein; binding-protein-dependent transport system inner membrane protein 1575398 5311565 Amet_1514 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001319367.1 1574628 D 293826 CDS YP_001319368.1 150389319 5311566 1575429..1577138 1 NC_009633.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: dsy:DSY3208 hypothetical protein; oligopeptide/dipeptide ABC transporter ATPase 1577138 5311566 Amet_1515 Alkaliphilus metalliredigens QYMF oligopeptide/dipeptide ABC transporter ATPase YP_001319368.1 1575429 D 293826 CDS YP_001319369.1 150389320 5311567 1577905..1578339 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cpf:CPF_0724 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1578339 5311567 Amet_1516 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001319369.1 1577905 D 293826 CDS YP_001319370.1 150389321 5311569 1579642..1580316 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: btl:BALH_1732 DNA-binding response regulator; two component transcriptional regulator 1580316 5311569 Amet_1518 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001319370.1 1579642 D 293826 CDS YP_001319371.1 150389322 5311570 1580313..1581869 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: gka:GK0907 two-component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 1581869 5311570 Amet_1519 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001319371.1 1580313 D 293826 CDS YP_001319372.1 150389323 5311571 1582019..1583299 1 NC_009633.1 KEGG: oih:OB0251 hypothetical protein; hypothetical protein 1583299 5311571 Amet_1520 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319372.1 1582019 D 293826 CDS YP_001319373.1 150389324 5311572 1583720..1584940 1 NC_009633.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3360 hypothetical protein; RND family efflux transporter MFP subunit 1584940 5311572 Amet_1521 Alkaliphilus metalliredigens QYMF RND family efflux transporter MFP subunit YP_001319373.1 1583720 D 293826 CDS YP_001319374.1 150389325 5311573 1584937..1588062 1 NC_009633.1 PFAM: acriflavin resistance protein; KEGG: dsy:DSY3359 hypothetical protein; acriflavin resistance protein 1588062 5311573 Amet_1522 Alkaliphilus metalliredigens QYMF acriflavin resistance protein YP_001319374.1 1584937 D 293826 CDS YP_001319375.1 150389326 5311575 join(1588902..1589831,1589831..1590139) 1 NC_009633.1 PFAM: transposase, IS111A/IS1328/IS1533; KEGG: gka:GK3301 transposase; transposase, IS111A/IS1328/IS1533 1590139 5311575 Amet_1524 Alkaliphilus metalliredigens QYMF transposase, IS111A/IS1328/IS1533 YP_001319375.1 1588902 D 293826 CDS YP_001319376.1 150389327 5311576 1590312..1592933 1 NC_009633.1 PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising protein, mobile region; KEGG: cac:CAC0534 phosphoenolpyruvate synthase (gene pps); phosphoenolpyruvate synthase 1592933 5311576 Amet_1525 Alkaliphilus metalliredigens QYMF phosphoenolpyruvate synthase YP_001319376.1 1590312 D 293826 CDS YP_001319377.1 150389328 5311577 1593211..1593822 1 NC_009633.1 KEGG: tko:TK1044 predicted permease, major facilitator superfamily; major facilitator superfamily permease 1593822 5311577 Amet_1526 Alkaliphilus metalliredigens QYMF major facilitator superfamily permease YP_001319377.1 1593211 D 293826 CDS YP_001319378.1 150389329 5311578 1594044..1595378 1 NC_009633.1 hypothetical protein 1595378 5311578 Amet_1527 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319378.1 1594044 D 293826 CDS YP_001319379.1 150389330 5311579 complement(1595501..1596706) 1 NC_009633.1 PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: gka:GK2252 transposase; transposase, IS204/IS1001/IS1096/IS1165 family protein 1596706 5311579 Amet_1528 Alkaliphilus metalliredigens QYMF transposase, IS204/IS1001/IS1096/IS1165 family protein YP_001319379.1 1595501 R 293826 CDS YP_001319380.1 150389331 5311580 1597032..1597394 1 NC_009633.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sat:SYN_00718 lactoylglutathione lyase; glyoxalase/bleomycin resistance protein/dioxygenase 1597394 5311580 Amet_1529 Alkaliphilus metalliredigens QYMF glyoxalase/bleomycin resistance protein/dioxygenase YP_001319380.1 1597032 D 293826 CDS YP_001319381.1 150389332 5311581 complement(1597477..1599024) 1 NC_009633.1 KEGG: swo:Swol_1096 hypothetical protein; hypothetical protein 1599024 5311581 Amet_1530 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319381.1 1597477 R 293826 CDS YP_001319382.1 150389333 5311584 complement(1600593..1601927) 1 NC_009633.1 KEGG: cth:Cthe_3229 transposase, IS4; hypothetical protein 1601927 5311584 Amet_1533 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319382.1 1600593 R 293826 CDS YP_001319383.1 150389334 5311585 1602510..1609385 1 NC_009633.1 TIGRFAM: cell wall/surface repeat protein; PFAM: S-layer domain protein; Cadherin; KEGG: ter:Tery_3470 hemolysin-type calcium-binding region; cell wall/surface repeat-containing protein 1609385 5311585 Amet_1534 Alkaliphilus metalliredigens QYMF cell wall/surface repeat-containing protein YP_001319383.1 1602510 D 293826 CDS YP_001319384.1 150389335 5311586 1610157..1611506 1 NC_009633.1 KEGG: fra:Francci3_4013 transposase, IS4; hypothetical protein 1611506 5311586 Amet_1535 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319384.1 1610157 D 293826 CDS YP_001319385.1 150389336 5311587 1611704..1612168 1 NC_009633.1 KEGG: sth:STH1112 ABC transporter ATP-binding protein; ABC transporter ATP-binding protein 1612168 5311587 Amet_1536 Alkaliphilus metalliredigens QYMF ABC transporter ATP-binding protein YP_001319385.1 1611704 D 293826 CDS YP_001319386.1 150389337 5311588 1612266..1613600 1 NC_009633.1 KEGG: cth:Cthe_3229 transposase, IS4; hypothetical protein 1613600 5311588 Amet_1537 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319386.1 1612266 D 293826 CDS YP_001319387.1 150389338 5311591 complement(1614199..1614663) 1 NC_009633.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: fnu:FN0673 EbsC protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 1614663 5311591 Amet_1540 Alkaliphilus metalliredigens QYMF YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_001319387.1 1614199 R 293826 CDS YP_001319388.1 150389339 5311593 complement(1615302..1615793) 1 NC_009633.1 hypothetical protein 1615793 5311593 Amet_1542 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319388.1 1615302 R 293826 CDS YP_001319389.1 150389340 5311595 1616682..1618589 1 NC_009633.1 PFAM: Abortive infection protein; KEGG: bam:Bamb_3325 hypothetical protein; abortive infection protein 1618589 5311595 Amet_1544 Alkaliphilus metalliredigens QYMF abortive infection protein YP_001319389.1 1616682 D 293826 CDS YP_001319390.1 150389341 5311596 1618880..1619683 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pgi:PG1175 ABC transporter, ATP-binding protein, putative; ABC transporter-like protein 1619683 5311596 Amet_1545 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319390.1 1618880 D 293826 CDS YP_001319391.1 150389342 5311597 complement(1619800..1619985) 1 NC_009633.1 hypothetical protein 1619985 5311597 Amet_1546 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319391.1 1619800 R 293826 CDS YP_001319392.1 150389343 5311598 complement(1620053..1621450) 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: btl:BALH_2995 transcriptional regulator, GntR family; GntR family transcriptional regulator 1621450 5311598 Amet_1547 Alkaliphilus metalliredigens QYMF GntR family transcriptional regulator YP_001319392.1 1620053 R 293826 CDS YP_001319393.1 150389344 5311599 1621606..1622016 1 NC_009633.1 KEGG: vfi:VF1078 hypothetical protein; hypothetical protein 1622016 5311599 Amet_1548 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319393.1 1621606 D 293826 CDS YP_001319394.1 150389345 5311602 complement(1622833..1624794) 1 NC_009633.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ser:SERP2381 NADH:flavin oxidoreductase/fumarate reductase, flavoprotein subunit, putative; flavocytochrome c 1624794 5311602 Amet_1551 Alkaliphilus metalliredigens QYMF flavocytochrome c YP_001319394.1 1622833 R 293826 CDS YP_001319395.1 150389346 5311603 complement(1624921..1625751) 1 NC_009633.1 PFAM: regulatory protein, MerR; KEGG: dsy:DSY2796 hypothetical protein; MerR family transcriptional regulator 1625751 5311603 Amet_1552 Alkaliphilus metalliredigens QYMF MerR family transcriptional regulator YP_001319395.1 1624921 R 293826 CDS YP_001319396.1 150389347 5311604 complement(1626114..1627853) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0540 ATPase components of ABC transporters with duplicated ATPase domains; ABC transporter-like protein 1627853 5311604 Amet_1553 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319396.1 1626114 R 293826 CDS YP_001319397.1 150389348 5311605 complement(1628247..1629458) 1 NC_009633.1 PFAM: protein of unknown function DUF214; KEGG: ctc:CTC00486 ABC transporter permease protein; hypothetical protein 1629458 5311605 Amet_1554 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319397.1 1628247 R 293826 CDS YP_001319398.1 150389349 5311606 complement(1629458..1630150) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY3656 hypothetical protein; ABC transporter-like protein 1630150 5311606 Amet_1555 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319398.1 1629458 R 293826 CDS YP_001319399.1 150389350 5311607 complement(1630143..1631471) 1 NC_009633.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cth:Cthe_1762 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1631471 5311607 Amet_1556 Alkaliphilus metalliredigens QYMF RND family efflux transporter MFP subunit YP_001319399.1 1630143 R 293826 CDS YP_001319400.1 150389351 5311608 1631780..1632475 1 NC_009633.1 KEGG: bha:BH0784 two-component sensor histidine kinase; two-component sensor histidine kinase 1632475 5311608 Amet_1557 Alkaliphilus metalliredigens QYMF two-component sensor histidine kinase YP_001319400.1 1631780 D 293826 CDS YP_001319401.1 150389352 5311609 1632491..1632964 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; KEGG: bha:BH0784 two-component sensor histidine kinase; putative signal transduction histidine kinase 1632964 5311609 Amet_1558 Alkaliphilus metalliredigens QYMF putative signal transduction histidine kinase YP_001319401.1 1632491 D 293826 CDS YP_001319402.1 150389353 5311610 1632951..1633613 1 NC_009633.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: bha:BH2123 two-component response regulator; two component LuxR family transcriptional regulator 1633613 5311610 Amet_1559 Alkaliphilus metalliredigens QYMF two component LuxR family transcriptional regulator YP_001319402.1 1632951 D 293826 CDS YP_001319403.1 150389354 5311611 1633743..1634984 1 NC_009633.1 PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: bha:BH3693 hypothetical protein; hypothetical protein 1634984 5311611 Amet_1560 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319403.1 1633743 D 293826 CDS YP_001319404.1 150389355 5311612 1635130..1636263 1 NC_009633.1 PFAM: beta-lactamase; KEGG: btl:BALH_2998 alkaline D-peptidase and alkaline D-peptidase fusion; beta-lactamase 1636263 5311612 Amet_1561 Alkaliphilus metalliredigens QYMF beta-lactamase YP_001319404.1 1635130 D 293826 CDS YP_001319405.1 150389356 5311613 1636487..1637842 1 NC_009633.1 PFAM: nucleoside recognition domain protein; KEGG: oih:OB3031 hypothetical protein; nucleoside recognition domain-containing protein 1637842 5311613 Amet_1562 Alkaliphilus metalliredigens QYMF nucleoside recognition domain-containing protein YP_001319405.1 1636487 D 293826 CDS YP_001319406.1 150389357 5311616 1639236..1639574 1 NC_009633.1 PFAM: transcriptional regulator PadR family protein; KEGG: dsy:DSY2245 hypothetical protein; PadR-like family transcriptional regulator 1639574 5311616 Amet_1565 Alkaliphilus metalliredigens QYMF PadR-like family transcriptional regulator YP_001319406.1 1639236 D 293826 CDS YP_001319407.1 150389358 5311617 1639558..1640931 1 NC_009633.1 PFAM: cell cycle protein; KEGG: lin:lin0441 hypothetical protein; cell cycle protein 1640931 5311617 Amet_1566 Alkaliphilus metalliredigens QYMF cell cycle protein YP_001319407.1 1639558 D 293826 CDS YP_001319408.1 150389359 5311620 1642262..1642984 1 NC_009633.1 hypothetical protein 1642984 5311620 Amet_1569 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319408.1 1642262 D 293826 CDS YP_001319409.1 150389360 5311621 1643119..1645311 1 NC_009633.1 TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: dsy:DSY1012 hypothetical protein; catalase/peroxidase HPI 1645311 5311621 Amet_1570 Alkaliphilus metalliredigens QYMF catalase/peroxidase HPI YP_001319409.1 1643119 D 293826 CDS YP_001319410.1 150389361 5311622 1645567..1645845 1 NC_009633.1 hypothetical protein 1645845 5311622 Amet_1571 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319410.1 1645567 D 293826 CDS YP_001319411.1 150389362 5311624 1646648..1647793 1 NC_009633.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: wsu:WS0964 hypothetical protein; diguanylate cyclase 1647793 5311624 Amet_1573 Alkaliphilus metalliredigens QYMF diguanylate cyclase YP_001319411.1 1646648 D 293826 CDS YP_001319412.1 150389363 5311625 1648225..1648905 1 NC_009633.1 PFAM: helix-turn-helix domain protein; KEGG: mgm:Mmc1_2222 PAS/PAC sensor hybrid histidine kinase; XRE family transcriptional regulator 1648905 5311625 Amet_1574 Alkaliphilus metalliredigens QYMF XRE family transcriptional regulator YP_001319412.1 1648225 D 293826 CDS YP_001319413.1 150389364 5311626 1649226..1651214 1 NC_009633.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY3380 hypothetical protein; methyl-accepting chemotaxis sensory transducer 1651214 5311626 Amet_1575 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001319413.1 1649226 D 293826 CDS YP_001319414.1 150389365 5311627 complement(1651350..1652348) 1 NC_009633.1 KEGG: vfi:VFA0631 hypothetical protein; hypothetical protein 1652348 5311627 Amet_1576 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319414.1 1651350 R 293826 CDS YP_001319415.1 150389366 5311628 1652586..1653290 1 NC_009633.1 hypothetical protein 1653290 5311628 Amet_1577 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319415.1 1652586 D 293826 CDS YP_001319416.1 150389367 5311629 1653492..1654226 1 NC_009633.1 PFAM: protein of unknown function DUF81; KEGG: ilo:IL0754 predicted permease; hypothetical protein 1654226 5311629 Amet_1578 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319416.1 1653492 D 293826 CDS YP_001319417.1 150389368 5311630 1654468..1655406 1 NC_009633.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bcz:pE33L466_0363 possible ABC transporter, periplasmic protein; glyoxalase/bleomycin resistance protein/dioxygenase 1655406 5311630 Amet_1579 Alkaliphilus metalliredigens QYMF glyoxalase/bleomycin resistance protein/dioxygenase YP_001319417.1 1654468 D 293826 CDS YP_001319418.1 150389369 5311631 1655474..1656085 1 NC_009633.1 KEGG: bca:BCE_5447 hypothetical protein; hypothetical protein 1656085 5311631 Amet_1580 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319418.1 1655474 D 293826 CDS YP_001319419.1 150389370 5311632 1656169..1656849 1 NC_009633.1 PFAM: helix-turn-helix domain protein; KEGG: cac:CAC3247 predicted transcriptional regulator, LacI/xre family; helix-turn-helix domain-containing protein 1656849 5311632 Amet_1581 Alkaliphilus metalliredigens QYMF helix-turn-helix domain-containing protein YP_001319419.1 1656169 D 293826 CDS YP_001319420.1 150389371 5311633 complement(1657085..1658434) 1 NC_009633.1 KEGG: fra:Francci3_4013 transposase, IS4; hypothetical protein 1658434 5311633 Amet_1582 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319420.1 1657085 R 293826 CDS YP_001319421.1 150389372 5311634 complement(1658538..1659122) 1 NC_009633.1 PFAM: pentapeptide repeat protein; KEGG: dps:DP2447 similar to McbG protein; pentapeptide repeat-containing protein 1659122 5311634 Amet_1583 Alkaliphilus metalliredigens QYMF pentapeptide repeat-containing protein YP_001319421.1 1658538 R 293826 CDS YP_001319422.1 150389373 5311635 1659418..1660056 1 NC_009633.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: tfu:Tfu_2950 regulatory protein, LuxR:response regulator receiver; two component LuxR family transcriptional regulator 1660056 5311635 Amet_1584 Alkaliphilus metalliredigens QYMF two component LuxR family transcriptional regulator YP_001319422.1 1659418 D 293826 CDS YP_001319423.1 150389374 5311636 1660326..1661390 1 NC_009633.1 hypothetical protein 1661390 5311636 Amet_1585 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319423.1 1660326 D 293826 CDS YP_001319424.1 150389375 5311637 complement(1661545..1662330) 1 NC_009633.1 PFAM: conserved hypothetical protein 245; KEGG: bca:BCE_5079 membrane protein, putative; hypothetical protein 1662330 5311637 Amet_1586 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319424.1 1661545 R 293826 CDS YP_001319425.1 150389376 5311638 complement(1662334..1662969) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0194 putative ABC transport system ATP-binding protein; ABC transporter-like protein 1662969 5311638 Amet_1587 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319425.1 1662334 R 293826 CDS YP_001319426.1 150389377 5311639 complement(1662985..1663293) 1 NC_009633.1 PFAM: transcriptional regulator PadR family protein; KEGG: bha:BH0575 hypothetical protein; PadR-like family transcriptional regulator 1663293 5311639 Amet_1588 Alkaliphilus metalliredigens QYMF PadR-like family transcriptional regulator YP_001319426.1 1662985 R 293826 CDS YP_001319427.1 150389378 5311640 1663472..1664671 1 NC_009633.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: chu:CHU_3423 chromate transporter, permease component; chromate transporter 1664671 5311640 Amet_1589 Alkaliphilus metalliredigens QYMF chromate transporter YP_001319427.1 1663472 D 293826 CDS YP_001319428.1 150389379 5311641 1664904..1665854 1 NC_009633.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: tte:TTE0793 hypothetical protein; hypothetical protein 1665854 5311641 Amet_1590 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319428.1 1664904 D 293826 CDS YP_001319429.1 150389380 5311642 complement(1665835..1666362) 1 NC_009633.1 KEGG: cac:CAC2385 hypothetical protein; hypothetical protein 1666362 5311642 Amet_1591 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319429.1 1665835 R 293826 CDS YP_001319430.1 150389381 5311643 complement(1666492..1666698) 1 NC_009633.1 PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: sth:STH1430 small acid-soluble spore protein; alpha/beta type small acid-soluble spore protein 1666698 5311643 Amet_1592 Alkaliphilus metalliredigens QYMF alpha/beta type small acid-soluble spore protein YP_001319430.1 1666492 R 293826 CDS YP_001319431.1 150389382 5311644 1667075..1668175 1 NC_009633.1 PFAM: phage integrase family protein; KEGG: ser:SERP2506 transposase A; phage integrase family protein 1668175 5311644 Amet_1593 Alkaliphilus metalliredigens QYMF phage integrase family protein YP_001319431.1 1667075 D 293826 CDS YP_001319432.1 150389383 5311645 1668188..1669645 1 NC_009633.1 PFAM: phage integrase family protein; KEGG: ser:SERP2507 transposase B; phage integrase family protein 1669645 5311645 Amet_1594 Alkaliphilus metalliredigens QYMF phage integrase family protein YP_001319432.1 1668188 D 293826 CDS YP_001319433.1 150389384 5311646 1669647..1671212 1 NC_009633.1 PFAM: phage integrase family protein; KEGG: sep:SE1612 transposition regulatory protein TnpB; phage integrase family protein 1671212 5311646 Amet_1595 Alkaliphilus metalliredigens QYMF phage integrase family protein YP_001319433.1 1669647 D 293826 CDS YP_001319434.1 150389385 5311647 1671199..1671663 1 NC_009633.1 KEGG: sar:SAR0725 Tn554 transposase C; hypothetical protein 1671663 5311647 Amet_1596 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319434.1 1671199 D 293826 CDS YP_001319435.1 150389386 5311648 complement(1671808..1672053) 1 NC_009633.1 PFAM: helix-turn-helix domain protein; KEGG: cyb:CYB_0663 hypothetical protein; helix-turn-helix domain-containing protein 1672053 5311648 Amet_1597 Alkaliphilus metalliredigens QYMF helix-turn-helix domain-containing protein YP_001319435.1 1671808 R 293826 CDS YP_001319436.1 150389387 5311649 1672174..1673805 1 NC_009633.1 KEGG: cch:Cag_0911 hypothetical protein; hypothetical protein 1673805 5311649 Amet_1598 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319436.1 1672174 D 293826 CDS YP_001319437.1 150389388 5311652 complement(1674607..1675683) 1 NC_009633.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: mbu:Mbur_2039 RNA-directed DNA polymerase; maturase-specific domain-containing protein 1675683 5311652 Amet_1601 Alkaliphilus metalliredigens QYMF maturase-specific domain-containing protein YP_001319437.1 1674607 R 293826 CDS YP_001319438.1 150389389 5311653 1676262..1678319 1 NC_009633.1 PFAM: Resolvase, N-terminal domain; KEGG: fra:Francci3_2088 recombinase; resolvase domain-containing protein 1678319 5311653 Amet_1602 Alkaliphilus metalliredigens QYMF resolvase domain-containing protein YP_001319438.1 1676262 D 293826 CDS YP_001319439.1 150389390 5311654 complement(1678328..1678777) 1 NC_009633.1 KEGG: mac:MA4228 reverse transcriptase; reverse transcriptase 1678777 5311654 Amet_1603 Alkaliphilus metalliredigens QYMF reverse transcriptase YP_001319439.1 1678328 R 293826 CDS YP_001319440.1 150389391 5311655 complement(1679303..1679857) 1 NC_009633.1 KEGG: cth:Cthe_2773 integrase, catalytic region; integrase, catalytic region 1679857 5311655 Amet_1604 Alkaliphilus metalliredigens QYMF integrase, catalytic region YP_001319440.1 1679303 R 293826 CDS YP_001319441.1 150389392 5311656 complement(1679878..1680150) 1 NC_009633.1 KEGG: cth:Cthe_0590 transposase IS3/IS911; transposase IS3/IS911 1680150 5311656 Amet_1605 Alkaliphilus metalliredigens QYMF transposase IS3/IS911 YP_001319441.1 1679878 R 293826 CDS YP_001319442.1 150389393 5311657 1680408..1680632 1 NC_009633.1 hypothetical protein 1680632 5311657 Amet_1606 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319442.1 1680408 D 293826 CDS YP_001319443.1 150389394 5311658 1680696..1683272 1 NC_009633.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: blo:BL1782 modification (methylase) protein of type I restriction-modification system; type I restriction-modification system, M subunit 1683272 5311658 Amet_1607 Alkaliphilus metalliredigens QYMF type I restriction-modification system, M subunit YP_001319443.1 1680696 D 293826 CDS YP_001319444.1 150389395 5311659 1683272..1684498 1 NC_009633.1 PFAM: restriction modification system DNA specificity domain; KEGG: lin:lin0523 hypothetical protein; restriction modification system DNA specificity subunit 1684498 5311659 Amet_1608 Alkaliphilus metalliredigens QYMF restriction modification system DNA specificity subunit YP_001319444.1 1683272 D 293826 CDS YP_001319445.1 150389396 5311660 1684517..1687600 1 NC_009633.1 TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; KEGG: lca:LSEI_2095 type I site-specific restriction-modification system, R (restriction) subunit related helicase; HsdR family type I site-specific deoxyribonuclease 1687600 5311660 Amet_1609 Alkaliphilus metalliredigens QYMF HsdR family type I site-specific deoxyribonuclease YP_001319445.1 1684517 D 293826 CDS YP_001319446.1 150389397 5311661 1688019..1693046 1 NC_009633.1 PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: she:Shewmr4_3209 putative transcriptional regulator; putative transcriptional regulator 1693046 5311661 Amet_1610 Alkaliphilus metalliredigens QYMF putative transcriptional regulator YP_001319446.1 1688019 D 293826 CDS YP_001319447.1 150389398 5311662 1693792..1695792 1 NC_009633.1 KEGG: mac:MA2602 hypothetical protein; hypothetical protein 1695792 5311662 Amet_1611 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319447.1 1693792 D 293826 CDS YP_001319448.1 150389399 5311663 1696257..1697477 1 NC_009633.1 PFAM: transposase, mutator type; KEGG: cth:Cthe_3207 transposase, mutator type; transposase, mutator type 1697477 5311663 Amet_1612 Alkaliphilus metalliredigens QYMF transposase, mutator type YP_001319448.1 1696257 D 293826 CDS YP_001319449.1 150389400 5311664 1698868..1699563 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tte:TTE0796 uncharacterized Fe-S protein; 4Fe-4S ferredoxin 1699563 5311664 Amet_1613 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001319449.1 1698868 D 293826 CDS YP_001319450.1 150389401 5311665 1699969..1701069 1 NC_009633.1 PFAM: polysaccharide deacetylase; KEGG: cth:Cthe_0175 polysaccharide deacetylase; polysaccharide deacetylase 1701069 5311665 Amet_1614 Alkaliphilus metalliredigens QYMF polysaccharide deacetylase YP_001319450.1 1699969 D 293826 CDS YP_001319451.1 150389402 5311666 complement(1701097..1702023) 1 NC_009633.1 PFAM: Na+/Pi-cotransporter; KEGG: cpf:CPF_2677 Na/Pi-cotransporter family protein/PhoU family protein; Na+/Pi-cotransporter 1702023 5311666 Amet_1615 Alkaliphilus metalliredigens QYMF Na+/Pi-cotransporter YP_001319451.1 1701097 R 293826 CDS YP_001319452.1 150389403 5311667 complement(1702178..1703410) 1 NC_009633.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 1703410 5311667 Amet_1616 Alkaliphilus metalliredigens QYMF aspartate aminotransferase YP_001319452.1 1702178 R 293826 CDS YP_001319453.1 150389404 5311668 1703563..1704327 1 NC_009633.1 PFAM: polysaccharide deacetylase; KEGG: ctc:CTC02298 chitooligosaccharide deacetylase; polysaccharide deacetylase 1704327 5311668 Amet_1617 Alkaliphilus metalliredigens QYMF polysaccharide deacetylase YP_001319453.1 1703563 D 293826 CDS YP_001319454.1 150389405 5311669 1704444..1705985 1 NC_009633.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; KEGG: bce:BC3914 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; UDP-N-acetylmuramyl tripeptide synthetase 1705985 5311669 Amet_1618 Alkaliphilus metalliredigens QYMF UDP-N-acetylmuramyl tripeptide synthetase YP_001319454.1 1704444 D 293826 CDS YP_001319455.1 150389406 5311670 1706112..1706771 1 NC_009633.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1706771 5311670 Amet_1619 Alkaliphilus metalliredigens QYMF single-stranded DNA-binding protein YP_001319455.1 1706112 D 293826 CDS YP_001319456.1 150389407 5311671 complement(1707249..1707716) 1 NC_009633.1 PFAM: GAF domain protein; KEGG: tte:TTE1743 GAF domain-containing protein; putative GAF sensor protein 1707716 5311671 Amet_1620 Alkaliphilus metalliredigens QYMF putative GAF sensor protein YP_001319456.1 1707249 R 293826 CDS YP_001319457.1 150389408 5311672 1707895..1708434 1 NC_009633.1 TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: cno:NT01CX_1811 hypoxanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 1708434 5311672 Amet_1621 Alkaliphilus metalliredigens QYMF hypoxanthine phosphoribosyltransferase YP_001319457.1 1707895 D 293826 CDS YP_001319458.1 150389409 5311673 1708594..1709757 1 NC_009633.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: syf:Synpcc7942_0256 peptidase M20D, amidohydrolase; amidohydrolase 1709757 5311673 Amet_1622 Alkaliphilus metalliredigens QYMF amidohydrolase YP_001319458.1 1708594 D 293826 CDS YP_001319459.1 150389410 5311674 1709778..1710782 1 NC_009633.1 PFAM: Abortive infection protein; KEGG: tte:TTE2577 predicted metal-dependent membrane protease; abortive infection protein 1710782 5311674 Amet_1623 Alkaliphilus metalliredigens QYMF abortive infection protein YP_001319459.1 1709778 D 293826 CDS YP_001319460.1 150389411 5311675 1710911..1712326 1 NC_009633.1 KEGG: aci:ACIAD0613 conserved hypothetical protein; putative phospholipase D endonuclease domain; hypothetical protein 1712326 5311675 Amet_1624 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319460.1 1710911 D 293826 CDS YP_001319461.1 150389412 5311676 1712594..1712794 1 NC_009633.1 KEGG: cpr:CPR_1870 small, acid-soluble spore protein, alpha/beta family; alpha/beta type small acid-soluble spore protein 1712794 5311676 Amet_1625 Alkaliphilus metalliredigens QYMF alpha/beta type small acid-soluble spore protein YP_001319461.1 1712594 D 293826 CDS YP_001319462.1 150389413 5311677 1712872..1713624 1 NC_009633.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bce:BC4326 methyltransferase; type 11 methyltransferase 1713624 5311677 Amet_1626 Alkaliphilus metalliredigens QYMF type 11 methyltransferase YP_001319462.1 1712872 D 293826 CDS YP_001319463.1 150389414 5311678 1713834..1714034 1 NC_009633.1 PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: efa:EF1367 cold-shock domain family protein; cold-shock DNA-binding domain-containing protein 1714034 5311678 Amet_1627 Alkaliphilus metalliredigens QYMF cold-shock DNA-binding domain-containing protein YP_001319463.1 1713834 D 293826 CDS YP_001319464.1 150389415 5311679 1714328..1715206 1 NC_009633.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 1715206 hslO 5311679 hslO Alkaliphilus metalliredigens QYMF Hsp33-like chaperonin YP_001319464.1 1714328 D 293826 CDS YP_001319465.1 150389416 5311683 1715798..1716709 1 NC_009633.1 PFAM: Sporulation protein YtxC; KEGG: cth:Cthe_2071 hypothetical protein; sporulation protein YtxC 1716709 5311683 Amet_1629 Alkaliphilus metalliredigens QYMF sporulation protein YtxC YP_001319465.1 1715798 D 293826 CDS YP_001319466.1 150389417 5311684 1717036..1717638 1 NC_009633.1 KEGG: mta:Moth_1760 hypothetical protein; hypothetical protein 1717638 5311684 Amet_1630 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319466.1 1717036 D 293826 CDS YP_001319467.1 150389418 5311685 1718079..1719989 1 NC_009633.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1719989 thrS 5311685 thrS Alkaliphilus metalliredigens QYMF threonyl-tRNA synthetase YP_001319467.1 1718079 D 293826 CDS YP_001319468.1 150389419 5311686 complement(1720047..1721627) 1 NC_009633.1 TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: tte:TTE1992 ATP-dependent Zn proteases; ATP-dependent metalloprotease FtsH 1721627 5311686 Amet_1632 Alkaliphilus metalliredigens QYMF ATP-dependent metalloprotease FtsH YP_001319468.1 1720047 R 293826 CDS YP_001319469.1 150389420 5311687 1722063..1722491 1 NC_009633.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: cpr:CPR_1858 translation initiation factor IF-3; translation initiation factor IF-3 1722491 5311687 Amet_1633 Alkaliphilus metalliredigens QYMF translation initiation factor IF-3 YP_001319469.1 1722063 D 293826 CDS YP_001319470.1 150389421 5311688 1722512..1722703 1 NC_009633.1 PFAM: ribosomal protein L35; KEGG: cno:NT01CX_1762 ribosomal protein L35; 50S ribosomal protein L35 1722703 5311688 Amet_1634 Alkaliphilus metalliredigens QYMF 50S ribosomal protein L35 YP_001319470.1 1722512 D 293826 CDS YP_001319471.1 150389422 5311689 1722736..1723095 1 NC_009633.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1723095 rplT 5311689 rplT Alkaliphilus metalliredigens QYMF 50S ribosomal protein L20 YP_001319471.1 1722736 D 293826 CDS YP_001319472.1 150389423 5311690 1723363..1724712 1 NC_009633.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: tte:TTE0196 trk-type K+ transport systems, membrane components; TrkH family potassium uptake protein 1724712 5311690 Amet_1636 Alkaliphilus metalliredigens QYMF TrkH family potassium uptake protein YP_001319472.1 1723363 D 293826 CDS YP_001319473.1 150389424 5311691 1724726..1725370 1 NC_009633.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: cpf:CPF_2142 putative potassium uptake protein; TrkA domain-containing protein 1725370 5311691 Amet_1637 Alkaliphilus metalliredigens QYMF TrkA domain-containing protein YP_001319473.1 1724726 D 293826 CDS YP_001319474.1 150389425 5311692 1725385..1726203 1 NC_009633.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: cth:Cthe_1222 RNA methyltransferase, TrmH family, group 3; RNA methyltransferase 1726203 5311692 Amet_1638 Alkaliphilus metalliredigens QYMF RNA methyltransferase YP_001319474.1 1725385 D 293826 CDS YP_001319475.1 150389426 5311693 1726781..1727800 1 NC_009633.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 1727800 pheS 5311693 pheS Alkaliphilus metalliredigens QYMF phenylalanyl-tRNA synthetase subunit alpha YP_001319475.1 1726781 D 293826 CDS YP_001319476.1 150389427 5311694 1727824..1730217 1 NC_009633.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 1730217 pheT 5311694 pheT Alkaliphilus metalliredigens QYMF phenylalanyl-tRNA synthetase subunit beta YP_001319476.1 1727824 D 293826 CDS YP_001319477.1 150389428 5311695 1730324..1730893 1 NC_009633.1 PFAM: protein of unknown function DUF710; KEGG: cac:CAC2355 hypothetical protein; hypothetical protein 1730893 5311695 Amet_1641 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319477.1 1730324 D 293826 CDS YP_001319478.1 150389429 5311696 1731021..1733444 1 NC_009633.1 PFAM: peptidase U32; KEGG: tte:TTE1686 collagenase and related proteases; peptidase U32 1733444 5311696 Amet_1642 Alkaliphilus metalliredigens QYMF peptidase U32 YP_001319478.1 1731021 D 293826 CDS YP_001319479.1 150389430 5311697 1733575..1734105 1 NC_009633.1 PFAM: regulatory protein, MarR; iron dependent repressor; KEGG: cth:Cthe_1402 iron (metal) dependent repressor, DtxR family; iron dependent repressor 1734105 5311697 Amet_1643 Alkaliphilus metalliredigens QYMF iron dependent repressor YP_001319479.1 1733575 D 293826 CDS YP_001319480.1 150389431 5311698 1734321..1735082 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1389 putative manganese transport system ATP-binding protein; ABC transporter-like protein 1735082 5311698 Amet_1644 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319480.1 1734321 D 293826 CDS YP_001319481.1 150389432 5311699 1735079..1735954 1 NC_009633.1 PFAM: ABC-3 protein; KEGG: bha:BH1390 putative manganese transport system permease protein; ABC-3 protein 1735954 5311699 Amet_1645 Alkaliphilus metalliredigens QYMF ABC-3 protein YP_001319481.1 1735079 D 293826 CDS YP_001319482.1 150389433 5311700 1736025..1736993 1 NC_009633.1 PFAM: periplasmic solute binding protein; KEGG: bha:BH0516 putative manganese transport system substrate-binding protein; periplasmic solute binding protein 1736993 5311700 Amet_1646 Alkaliphilus metalliredigens QYMF periplasmic solute binding protein YP_001319482.1 1736025 D 293826 CDS YP_001319483.1 150389434 5311701 1737211..1738164 1 NC_009633.1 KEGG: tfu:Tfu_0754 putative ATP-binding protein; putative ATP-binding protein 1738164 5311701 Amet_1647 Alkaliphilus metalliredigens QYMF putative ATP-binding protein YP_001319483.1 1737211 D 293826 CDS YP_001319484.1 150389435 5311702 1738161..1739609 1 NC_009633.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: nfa:nfa25650 putative decarboxylase; Orn/DAP/Arg decarboxylase 2 1739609 5311702 Amet_1648 Alkaliphilus metalliredigens QYMF Orn/DAP/Arg decarboxylase 2 YP_001319484.1 1738161 D 293826 CDS YP_001319485.1 150389436 5311703 1739629..1740957 1 NC_009633.1 PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; SMART: Rhodanese domain protein; KEGG: nfa:nfa25640 hypothetical protein; pyridoxal-5'-phosphate-dependent protein subunit beta 1740957 5311703 Amet_1649 Alkaliphilus metalliredigens QYMF pyridoxal-5'-phosphate-dependent protein subunit beta YP_001319485.1 1739629 D 293826 CDS YP_001319486.1 150389437 5311704 1740960..1742189 1 NC_009633.1 PFAM: aminotransferase, class V; KEGG: nfa:nfa25670 hypothetical protein; class V aminotransferase 1742189 5311704 Amet_1650 Alkaliphilus metalliredigens QYMF class V aminotransferase YP_001319486.1 1740960 D 293826 CDS YP_001319487.1 150389438 5311705 1742457..1743197 1 NC_009633.1 KEGG: hwa:HQ2306A ABC-type cobalt transport system, permease protein I; Co2+ ABC transporter permease-like protein 1743197 5311705 Amet_1651 Alkaliphilus metalliredigens QYMF Co2+ ABC transporter permease-like protein YP_001319487.1 1742457 D 293826 CDS YP_001319488.1 150389439 5311706 1743226..1743939 1 NC_009633.1 PFAM: cobalt transport protein; KEGG: ter:Tery_2781 cobalt ABC transporter, inner membrane subunit CbiQ; cobalt transport protein 1743939 5311706 Amet_1652 Alkaliphilus metalliredigens QYMF cobalt transport protein YP_001319488.1 1743226 D 293826 CDS YP_001319489.1 150389440 5311707 1743927..1744787 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mac:MA4020 ABC transporter, ATP-binding protein; ABC transporter-like protein 1744787 5311707 Amet_1653 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319489.1 1743927 D 293826 CDS YP_001319490.1 150389441 5311708 1744904..1745599 1 NC_009633.1 PFAM: SNARE associated Golgi protein; KEGG: vfi:VFA0098 transporter; hypothetical protein 1745599 5311708 Amet_1654 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319490.1 1744904 D 293826 CDS YP_001319491.1 150389442 5311709 1745933..1747291 1 NC_009633.1 KEGG: fnu:FN1852 hypothetical protein; hypothetical protein 1747291 5311709 Amet_1655 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319491.1 1745933 D 293826 CDS YP_001319492.1 150389443 5311710 1747630..1747878 1 NC_009633.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: cno:NT01CX_2293 endo/excinuclease domain protein; excinuclease ABC subunit C 1747878 5311710 Amet_1656 Alkaliphilus metalliredigens QYMF excinuclease ABC subunit C YP_001319492.1 1747630 D 293826 CDS YP_001319493.1 150389444 5311711 1748151..1749314 1 NC_009633.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dsy:DSY0565 hypothetical protein; iron-containing alcohol dehydrogenase 1749314 5311711 Amet_1657 Alkaliphilus metalliredigens QYMF iron-containing alcohol dehydrogenase YP_001319493.1 1748151 D 293826 CDS YP_001319494.1 150389445 5311712 complement(1749430..1750575) 1 NC_009633.1 KEGG: cac:CAC0871 hypothetical protein; hypothetical protein 1750575 5311712 Amet_1658 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319494.1 1749430 R 293826 CDS YP_001319495.1 150389446 5311713 1750764..1751501 1 NC_009633.1 KEGG: pca:Pcar_2755 nitroreductase; nitroreductase 1751501 5311713 Amet_1659 Alkaliphilus metalliredigens QYMF nitroreductase YP_001319495.1 1750764 D 293826 CDS YP_001319496.1 150389447 5311714 complement(1751574..1752146) 1 NC_009633.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: cth:Cthe_0614 pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate ferredoxin/flavodoxin oxidoreductase 1752146 5311714 Amet_1660 Alkaliphilus metalliredigens QYMF pyruvate ferredoxin/flavodoxin oxidoreductase YP_001319496.1 1751574 R 293826 CDS YP_001319497.1 150389448 5311715 complement(1752160..1753947) 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: swo:Swol_1196 thiamine pyrophosphate enzyme; indolepyruvate ferredoxin oxidoreductase 1753947 5311715 Amet_1661 Alkaliphilus metalliredigens QYMF indolepyruvate ferredoxin oxidoreductase YP_001319497.1 1752160 R 293826 CDS YP_001319498.1 150389449 5311716 1754576..1756972 1 NC_009633.1 TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: mla:Mlab_0850 hypothetical protein; CRISPR-associated helicase Cas3 1756972 5311716 Amet_1662 Alkaliphilus metalliredigens QYMF CRISPR-associated helicase Cas3 YP_001319498.1 1754576 D 293826 CDS YP_001319499.1 150389450 5311717 1756987..1757739 1 NC_009633.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: mla:Mlab_0849 hypothetical protein; CRISPR-associated Cas5 family protein 1757739 5311717 Amet_1663 Alkaliphilus metalliredigens QYMF CRISPR-associated Cas5 family protein YP_001319499.1 1756987 D 293826 CDS YP_001319500.1 150389451 5311718 1757723..1759678 1 NC_009633.1 TIGRFAM: CRISPR-associated protein, Csd1 family; KEGG: bcl:ABC3595 hypothetical protein; CRISPR-associated RAMP Csd1 family protein 1759678 5311718 Amet_1664 Alkaliphilus metalliredigens QYMF CRISPR-associated RAMP Csd1 family protein YP_001319500.1 1757723 D 293826 CDS YP_001319501.1 150389452 5311719 1759694..1760554 1 NC_009633.1 TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family; PFAM: CRISPR-associated protein TM1801; KEGG: bha:BH0339 hypothetical protein; CRISPR-associated Csd2 family protein 1760554 5311719 Amet_1665 Alkaliphilus metalliredigens QYMF CRISPR-associated Csd2 family protein YP_001319501.1 1759694 D 293826 CDS YP_001319502.1 150389453 5311720 1760541..1761209 1 NC_009633.1 TIGRFAM: CRISPR-associated protein Cas4; KEGG: bad:BAD_1181 hypothetical protein; CRISPR-associated Cas4 family protein 1761209 5311720 Amet_1666 Alkaliphilus metalliredigens QYMF CRISPR-associated Cas4 family protein YP_001319502.1 1760541 D 293826 CDS YP_001319503.1 150389454 5311721 1761206..1762237 1 NC_009633.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: bcl:ABC3592 hypothetical protein; CRISPR-associated Cas1 family protein 1762237 5311721 Amet_1667 Alkaliphilus metalliredigens QYMF CRISPR-associated Cas1 family protein YP_001319503.1 1761206 D 293826 CDS YP_001319504.1 150389455 5311722 1762246..1762536 1 NC_009633.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: bcl:ABC3591 hypothetical protein; CRISPR-associated Cas2 family protein 1762536 5311722 Amet_1668 Alkaliphilus metalliredigens QYMF CRISPR-associated Cas2 family protein YP_001319504.1 1762246 D 293826 CDS YP_001319505.1 150389456 5311723 complement(1764000..1765043) 1 NC_009633.1 PFAM: NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1765043 5311723 Amet_1669 Alkaliphilus metalliredigens QYMF NADPH-dependent FMN reductase YP_001319505.1 1764000 R 293826 CDS YP_001319506.1 150389457 5311724 complement(1765040..1766284) 1 NC_009633.1 KEGG: llm:llmg_1429 L-lactate dehydrogenase; malate/lactate dehydrogenase-like protein 1766284 5311724 Amet_1670 Alkaliphilus metalliredigens QYMF malate/lactate dehydrogenase-like protein YP_001319506.1 1765040 R 293826 CDS YP_001319507.1 150389458 5311725 complement(1766303..1771198) 1 NC_009633.1 PFAM: cytidylyltransferase; cytidylyltransferase 1771198 5311725 Amet_1671 Alkaliphilus metalliredigens QYMF cytidylyltransferase YP_001319507.1 1766303 R 293826 CDS YP_001319508.1 150389459 5311726 1771688..1772071 1 NC_009633.1 PFAM: RDD domain containing protein; KEGG: ctc:CTC01455 hypothetical protein; RDD domain-containing protein 1772071 5311726 Amet_1672 Alkaliphilus metalliredigens QYMF RDD domain-containing protein YP_001319508.1 1771688 D 293826 CDS YP_001319509.1 150389460 5311727 1772263..1773090 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 3; KEGG: cno:NT01CX_0932 amino acid ABC transporter, substrate-binding protein; extracellular solute-binding protein 1773090 5311727 Amet_1673 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001319509.1 1772263 D 293826 CDS YP_001319510.1 150389461 5311728 1773187..1773840 1 NC_009633.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssp:SSP0937 truncated ABC-type amino acid transport system periplasmic component; polar amino acid ABC transporter inner membrane subunit 1773840 5311728 Amet_1674 Alkaliphilus metalliredigens QYMF polar amino acid ABC transporter inner membrane subunit YP_001319510.1 1773187 D 293826 CDS YP_001319511.1 150389462 5311729 1773827..1774564 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0934 ABC transporter; ABC transporter-like protein 1774564 5311729 Amet_1675 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319511.1 1773827 D 293826 CDS YP_001319512.1 150389463 5311730 1774790..1778320 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cth:Cthe_3120 pyruvate flavodoxin/ferredoxin oxidoreductase-like protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 1778320 5311730 Amet_1676 Alkaliphilus metalliredigens QYMF pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_001319512.1 1774790 D 293826 CDS YP_001319513.1 150389464 5311731 1778721..1780196 1 NC_009633.1 amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 1780196 5311731 Amet_1677 Alkaliphilus metalliredigens QYMF 4-alpha-glucanotransferase YP_001319513.1 1778721 D 293826 CDS YP_001319514.1 150389465 5311732 1780205..1782565 1 NC_009633.1 TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35; KEGG: cno:NT01CX_0970 glycogen phosphorylase; glycogen/starch/alpha-glucan phosphorylase 1782565 5311732 Amet_1678 Alkaliphilus metalliredigens QYMF glycogen/starch/alpha-glucan phosphorylase YP_001319514.1 1780205 D 293826 CDS YP_001319515.1 150389466 5311733 1782753..1783343 1 NC_009633.1 PFAM: protein of unknown function DUF218; KEGG: pst:PSPTO_4635 hypothetical protein; hypothetical protein 1783343 5311733 Amet_1679 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319515.1 1782753 D 293826 CDS YP_001319516.1 150389467 5311734 1783387..1783866 1 NC_009633.1 PFAM: protein of unknown function DUF984; KEGG: cac:CAC1000 uncharacterized protein, homolog of YhfF B.subtilis; hypothetical protein 1783866 5311734 Amet_1680 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319516.1 1783387 D 293826 CDS YP_001319517.1 150389468 5311735 1784126..1784665 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: oih:OB3092 RNA polymerase ECF-type sigma factor; ECF subfamily RNA polymerase sigma-24 factor 1784665 5311735 Amet_1681 Alkaliphilus metalliredigens QYMF ECF subfamily RNA polymerase sigma-24 factor YP_001319517.1 1784126 D 293826 CDS YP_001319518.1 150389469 5311736 1784658..1785440 1 NC_009633.1 KEGG: oih:OB3091 hypothetical protein; hypothetical protein 1785440 5311736 Amet_1682 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319518.1 1784658 D 293826 CDS YP_001319519.1 150389470 5311737 complement(1785723..1785893) 1 NC_009633.1 KEGG: cth:Cthe_3121 hypothetical protein; hypothetical protein 1785893 5311737 Amet_1683 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319519.1 1785723 R 293826 CDS YP_001319520.1 150389471 5311738 1786369..1787646 1 NC_009633.1 TIGRFAM: uracil-xanthine permease; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: cno:NT01CX_0192 uracil-xanthine permease; uracil-xanthine permease 1787646 5311738 Amet_1684 Alkaliphilus metalliredigens QYMF uracil-xanthine permease YP_001319520.1 1786369 D 293826 CDS YP_001319521.1 150389472 5311739 1788029..1788694 1 NC_009633.1 hypothetical protein 1788694 5311739 Amet_1685 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319521.1 1788029 D 293826 CDS YP_001319522.1 150389473 5311740 1788684..1788959 1 NC_009633.1 KEGG: swo:Swol_0148 transposase and inactivated derivatives-like protein; hypothetical protein 1788959 5311740 Amet_1686 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319522.1 1788684 D 293826 CDS YP_001319523.1 150389474 5311742 1789630..1790397 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lwe:lwe2133 ABC transporter, ATP-binding protein; ABC transporter-like protein 1790397 5311742 Amet_1688 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319523.1 1789630 D 293826 CDS YP_001319524.1 150389475 5311743 1790384..1792243 1 NC_009633.1 PFAM: protein of unknown function DUF214; KEGG: bca:BCE_4984 ABC transporter, permease protein; hypothetical protein 1792243 5311743 Amet_1689 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319524.1 1790384 D 293826 CDS YP_001319525.1 150389476 5311744 1792245..1792613 1 NC_009633.1 PFAM: conserved hypothetical protein 1655; KEGG: btl:BALH_4471 hypothetical protein; hypothetical protein 1792613 5311744 Amet_1690 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319525.1 1792245 D 293826 CDS YP_001319526.1 150389477 5311745 1792704..1793417 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: btk:BT9727_0923 probable two-component response regulator; probable MrsR2 protein; two component transcriptional regulator 1793417 5311745 Amet_1691 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001319526.1 1792704 D 293826 CDS YP_001319527.1 150389478 5311746 1793420..1794823 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: cac:CAC0290 sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1794823 5311746 Amet_1692 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001319527.1 1793420 D 293826 CDS YP_001319528.1 150389479 5311747 1795071..1795286 1 NC_009633.1 hypothetical protein 1795286 5311747 Amet_1693 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319528.1 1795071 D 293826 CDS YP_001319529.1 150389480 5311748 1795572..1796684 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tte:TTE0177 uncharacterized Fe-S center protein; 4Fe-4S ferredoxin 1796684 5311748 Amet_1694 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001319529.1 1795572 D 293826 CDS YP_001319530.1 150389481 5311749 1796736..1797896 1 NC_009633.1 PFAM: metallophosphoesterase; KEGG: mma:MM3285 hypothetical protein; metallophosphoesterase 1797896 5311749 Amet_1695 Alkaliphilus metalliredigens QYMF metallophosphoesterase YP_001319530.1 1796736 D 293826 CDS YP_001319531.1 150389482 5311750 1797975..1798313 1 NC_009633.1 PFAM: Domain of unknown function DUF1874; KEGG: bsu:BG12113 hypothetical protein; hypothetical protein 1798313 5311750 Amet_1696 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319531.1 1797975 D 293826 CDS YP_001319532.1 150389483 5311751 1798375..1799562 1 NC_009633.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: mta:Moth_1287 beta-lactamase-like; flavodoxin/nitric oxide synthase 1799562 5311751 Amet_1697 Alkaliphilus metalliredigens QYMF flavodoxin/nitric oxide synthase YP_001319532.1 1798375 D 293826 CDS YP_001319533.1 150389484 5311752 1799732..1800238 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bld:BLi01935 putative phosphinothricin N-acetyltransferase; RBL02351; N-acetyltransferase GCN5 1800238 5311752 Amet_1698 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001319533.1 1799732 D 293826 CDS YP_001319534.1 150389485 5311753 complement(1800291..1801463) 1 NC_009633.1 TIGRFAM: TraB family protein; PFAM: TraB determinant protein; KEGG: dsy:DSY1534 hypothetical protein; TraB family protein 1801463 5311753 Amet_1699 Alkaliphilus metalliredigens QYMF TraB family protein YP_001319534.1 1800291 R 293826 CDS YP_001319535.1 150389486 5311754 1801931..1802923 1 NC_009633.1 TIGRFAM: Quinone oxidoreductase putative, YhdH/YhfP; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gka:GK1429 hypothetical protein; quinone oxidoreductase 1802923 5311754 Amet_1700 Alkaliphilus metalliredigens QYMF quinone oxidoreductase YP_001319535.1 1801931 D 293826 CDS YP_001319536.1 150389487 5311755 1803130..1806057 1 NC_009633.1 PFAM: peptidase M16 domain protein; Peptidase M16C associated domain protein; KEGG: cno:NT01CX_1662 Zn-dependent peptidase, insulinase family; peptidase M16C associated domain-containing protein 1806057 5311755 Amet_1701 Alkaliphilus metalliredigens QYMF peptidase M16C associated domain-containing protein YP_001319536.1 1803130 D 293826 CDS YP_001319537.1 150389488 5311756 complement(1806097..1807710) 1 NC_009633.1 catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 1807710 5311756 Amet_1702 Alkaliphilus metalliredigens QYMF putative manganese-dependent inorganic pyrophosphatase YP_001319537.1 1806097 R 293826 CDS YP_001319538.1 150389489 5311757 1807988..1808305 1 NC_009633.1 KEGG: ctc:CTC00658 hypothetical protein; hypothetical protein 1808305 5311757 Amet_1703 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319538.1 1807988 D 293826 CDS YP_001319539.1 150389490 5311758 1808375..1809610 1 NC_009633.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cac:CAC3586 competence-damage inducible protein, CINA; competence damage-inducible protein A 1809610 5311758 Amet_1704 Alkaliphilus metalliredigens QYMF competence damage-inducible protein A YP_001319539.1 1808375 D 293826 CDS YP_001319540.1 150389491 5311759 1809695..1810849 1 NC_009633.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cac:CAC0277 HD-GYP hydrolase domain containing protein; metal dependent phosphohydrolase 1810849 5311759 Amet_1705 Alkaliphilus metalliredigens QYMF metal dependent phosphohydrolase YP_001319540.1 1809695 D 293826 CDS YP_001319541.1 150389492 5311760 1811105..1812058 1 NC_009633.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: btk:BT9727_0531 NAD-dependent epimerase/dehydratase; L-threonine dehydrogenase; NAD-dependent epimerase/dehydratase 1812058 5311760 Amet_1706 Alkaliphilus metalliredigens QYMF NAD-dependent epimerase/dehydratase YP_001319541.1 1811105 D 293826 CDS YP_001319542.1 150389493 5311761 1812252..1812848 1 NC_009633.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1812848 5311761 Amet_1707 Alkaliphilus metalliredigens QYMF 30S ribosomal protein S4 YP_001319542.1 1812252 D 293826 CDS YP_001319543.1 150389494 5311762 1812996..1814099 1 NC_009633.1 PFAM: alanine racemase domain protein; KEGG: fnu:FN0552 serine racemase; alanine racemase domain-containing protein 1814099 5311762 Amet_1708 Alkaliphilus metalliredigens QYMF alanine racemase domain-containing protein YP_001319543.1 1812996 D 293826 CDS YP_001319544.1 150389495 5311763 complement(1814150..1814899) 1 NC_009633.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cno:NT01CX_0777 peptidil-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1814899 5311763 Amet_1709 Alkaliphilus metalliredigens QYMF PpiC-type peptidyl-prolyl cis-trans isomerase YP_001319544.1 1814150 R 293826 CDS YP_001319545.1 150389496 5311764 1815168..1816979 1 NC_009633.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: cth:Cthe_1007 GTP-binding protein TypA; GTP-binding protein TypA 1816979 5311764 Amet_1710 Alkaliphilus metalliredigens QYMF GTP-binding protein TypA YP_001319545.1 1815168 D 293826 CDS YP_001319546.1 150389497 5311765 1817319..1818296 1 NC_009633.1 PFAM: polysaccharide deacetylase; KEGG: cno:NT01CX_0701 polysaccharide deacetylase family protein; polysaccharide deacetylase 1818296 5311765 Amet_1711 Alkaliphilus metalliredigens QYMF polysaccharide deacetylase YP_001319546.1 1817319 D 293826 CDS YP_001319547.1 150389498 5311766 1818357..1820726 1 NC_009633.1 TIGRFAM: MutS2 family protein; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein; KEGG: cth:Cthe_1014 MutS2 family protein; MutS2 family protein 1820726 5311766 Amet_1712 Alkaliphilus metalliredigens QYMF MutS2 family protein YP_001319547.1 1818357 D 293826 CDS YP_001319548.1 150389499 5311767 1820794..1821225 1 NC_009633.1 PFAM: protein of unknown function DUF523; KEGG: swo:Swol_1164 hypothetical protein; hypothetical protein 1821225 5311767 Amet_1713 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319548.1 1820794 D 293826 CDS YP_001319549.1 150389500 5311768 1821630..1823330 1 NC_009633.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1823330 argS 5311768 argS Alkaliphilus metalliredigens QYMF arginyl-tRNA synthetase YP_001319549.1 1821630 D 293826 CDS YP_001319550.1 150389501 5311769 1823520..1826012 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 5; chemotaxis sensory transducer; KEGG: sth:STH128 oligopeptide ABC transporter substrate-binding protein; methyl-accepting chemotaxis sensory transducer 1826012 5311769 Amet_1715 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001319550.1 1823520 D 293826 CDS YP_001319551.1 150389502 5311770 1826151..1827287 1 NC_009633.1 hypothetical protein 1827287 5311770 Amet_1716 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319551.1 1826151 D 293826 CDS YP_001319552.1 150389503 5311771 complement(1827315..1827509) 1 NC_009633.1 hypothetical protein 1827509 5311771 Amet_1717 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319552.1 1827315 R 293826 CDS YP_001319553.1 150389504 5311772 1827552..1828997 1 NC_009633.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cno:NT01CX_0730 MATE efflux family protein; MATE efflux family protein 1828997 5311772 Amet_1718 Alkaliphilus metalliredigens QYMF MATE efflux family protein YP_001319553.1 1827552 D 293826 CDS YP_001319554.1 150389505 5311773 complement(1829044..1829652) 1 NC_009633.1 KEGG: cpr:CPR_2292 hypothetical protein; hypothetical protein 1829652 5311773 Amet_1719 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319554.1 1829044 R 293826 CDS YP_001319555.1 150389506 5311774 complement(1829815..1830456) 1 NC_009633.1 hypothetical protein 1830456 5311774 Amet_1720 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319555.1 1829815 R 293826 CDS YP_001319556.1 150389507 5311775 1830637..1831392 1 NC_009633.1 KEGG: dre:566887 hypothetical LOC566887; hypothetical protein 1831392 5311775 Amet_1721 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319556.1 1830637 D 293826 CDS YP_001319557.1 150389508 5311776 1831394..1833157 1 NC_009633.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_3186 radical SAM; radical SAM domain-containing protein 1833157 5311776 Amet_1722 Alkaliphilus metalliredigens QYMF radical SAM domain-containing protein YP_001319557.1 1831394 D 293826 CDS YP_001319558.1 150389509 5311777 1833189..1833941 1 NC_009633.1 hypothetical protein 1833941 5311777 Amet_1723 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319558.1 1833189 D 293826 CDS YP_001319559.1 150389510 5311778 1833941..1834426 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gka:GK0927 acetyltransferase (GNAT family); N-acetyltransferase GCN5 1834426 5311778 Amet_1724 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001319559.1 1833941 D 293826 CDS YP_001319560.1 150389511 5311779 1834446..1835576 1 NC_009633.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cpr:CPR_1840 TPR domain protein; hypothetical protein 1835576 5311779 Amet_1725 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319560.1 1834446 D 293826 CDS YP_001319561.1 150389512 5311780 1835764..1836672 1 NC_009633.1 PFAM: phosphate acetyl/butaryl transferase; KEGG: tte:TTE2195 phosphotransacetylase; phosphate butyryltransferase 1836672 5311780 Amet_1726 Alkaliphilus metalliredigens QYMF phosphate butyryltransferase YP_001319561.1 1835764 D 293826 CDS YP_001319562.1 150389513 5311798 complement(1844667..1844927) 1 NC_009633.1 hypothetical protein 1844927 5311798 Amet_1727 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319562.1 1844667 R 293826 CDS YP_001319563.1 150389514 5311799 complement(1844964..1845569) 1 NC_009633.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bha:BH0418 unknown conserved protein in others; type 11 methyltransferase 1845569 5311799 Amet_1728 Alkaliphilus metalliredigens QYMF type 11 methyltransferase YP_001319563.1 1844964 R 293826 CDS YP_001319564.1 150389515 5311800 1845984..1846184 1 NC_009633.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: she:Shewmr4_2780 phage transcriptional regulator, AlpA; DNA binding domain-containing protein 1846184 5311800 Amet_1729 Alkaliphilus metalliredigens QYMF DNA binding domain-containing protein YP_001319564.1 1845984 D 293826 CDS YP_001319565.1 150389516 5311801 1846281..1846529 1 NC_009633.1 hypothetical protein 1846529 5311801 Amet_1730 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319565.1 1846281 D 293826 CDS YP_001319566.1 150389517 5311802 1846873..1847424 1 NC_009633.1 KEGG: mmp:MMP0549 hypothetical protein; hypothetical protein 1847424 5311802 Amet_1731 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319566.1 1846873 D 293826 CDS YP_001319567.1 150389518 5311803 1847451..1848893 1 NC_009633.1 PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: ctc:CTC01995 2',3'-cyclic-nucleotide 2'-phosphodiesterase; metallophosphoesterase 1848893 5311803 Amet_1732 Alkaliphilus metalliredigens QYMF metallophosphoesterase YP_001319567.1 1847451 D 293826 CDS YP_001319568.1 150389519 5311804 1849149..1850222 1 NC_009633.1 PFAM: ABC transporter related; transport-associated protein OB domain protein; SMART: AAA ATPase; KEGG: tma:TM0421 multiple sugar transport system ATP-binding protein; ABC transporter-like protein 1850222 5311804 Amet_1733 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319568.1 1849149 D 293826 CDS YP_001319569.1 150389520 5311805 1850219..1851112 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lca:LSEI_0990 ABC-type sugar transport system, permease component; binding-protein-dependent transport system inner membrane protein 1851112 5311805 Amet_1734 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001319569.1 1850219 D 293826 CDS YP_001319570.1 150389521 5311806 1851133..1851954 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lca:LSEI_0989 ABC-type maltose transport system, permease component; binding-protein-dependent transport system inner membrane protein 1851954 5311806 Amet_1735 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001319570.1 1851133 D 293826 CDS YP_001319571.1 150389522 5311807 1851979..1853307 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 1; KEGG: tma:TM0595 multiple sugar transport system substrate-binding protein; extracellular solute-binding protein 1853307 5311807 Amet_1736 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001319571.1 1851979 D 293826 CDS YP_001319572.1 150389523 5311808 complement(1853424..1855532) 1 NC_009633.1 PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: tte:TTE1387 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); polynucleotide phosphorylase/polyadenylase 1855532 5311808 Amet_1737 Alkaliphilus metalliredigens QYMF polynucleotide phosphorylase/polyadenylase YP_001319572.1 1853424 R 293826 CDS YP_001319573.1 150389524 5311810 complement(1855980..1856168) 1 NC_009633.1 hypothetical protein 1856168 5311810 Amet_1739 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319573.1 1855980 R 293826 CDS YP_001319574.1 150389525 5311811 1856570..1856815 1 NC_009633.1 hypothetical protein 1856815 5311811 Amet_1740 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319574.1 1856570 D 293826 CDS YP_001319575.1 150389526 5311812 1857005..1857325 1 NC_009633.1 hypothetical protein 1857325 5311812 Amet_1741 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319575.1 1857005 D 293826 CDS YP_001319576.1 150389527 5311813 1857348..1857467 1 NC_009633.1 hypothetical protein 1857467 5311813 Amet_1742 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319576.1 1857348 D 293826 CDS YP_001319577.1 150389528 5311814 1857744..1858100 1 NC_009633.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: tte:TTE2462 hypothetical protein; BFD/(2Fe-2S)-binding domain-containing protein 1858100 5311814 Amet_1743 Alkaliphilus metalliredigens QYMF BFD/(2Fe-2S)-binding domain-containing protein YP_001319577.1 1857744 D 293826 CDS YP_001319578.1 150389529 5311816 1862911..1863174 1 NC_009633.1 hypothetical protein 1863174 5311816 Amet_1745 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319578.1 1862911 D 293826 CDS YP_001319579.1 150389530 5311817 1863188..1863439 1 NC_009633.1 PFAM: LexA DNA-binding domain protein; KEGG: efa:EF1579 transcriptional repressor LexA; LexA family transcriptional regulator 1863439 5311817 Amet_1746 Alkaliphilus metalliredigens QYMF LexA family transcriptional regulator YP_001319579.1 1863188 D 293826 CDS YP_001319580.1 150389531 5311818 1863530..1863655 1 NC_009633.1 hypothetical protein 1863655 5311818 Amet_1747 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319580.1 1863530 D 293826 CDS YP_001319581.1 150389532 5311820 1864505..1864633 1 NC_009633.1 hypothetical protein 1864633 5311820 Amet_1749 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319581.1 1864505 D 293826 CDS YP_001319582.1 150389533 5311821 1864634..1864939 1 NC_009633.1 hypothetical protein 1864939 5311821 Amet_1750 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319582.1 1864634 D 293826 CDS YP_001319583.1 150389534 5311822 1864989..1865141 1 NC_009633.1 hypothetical protein 1865141 5311822 Amet_1751 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319583.1 1864989 D 293826 CDS YP_001319584.1 150389535 5311823 1865535..1865984 1 NC_009633.1 hypothetical protein 1865984 5311823 Amet_1752 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319584.1 1865535 D 293826 CDS YP_001319585.1 150389536 5311824 complement(1866076..1867536) 1 NC_009633.1 KEGG: ctc:CTC00917 transposase; transposase 1867536 5311824 Amet_1753 Alkaliphilus metalliredigens QYMF transposase YP_001319585.1 1866076 R 293826 CDS YP_001319586.1 150389537 5311825 1867640..1869874 1 NC_009633.1 KEGG: dsy:DSY0935 hypothetical protein; hypothetical protein 1869874 5311825 Amet_1754 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319586.1 1867640 D 293826 CDS YP_001319587.1 150389538 5311826 1870252..1871907 1 NC_009633.1 PFAM: von Willebrand factor, type A; KEGG: sus:Acid_6218 von Willebrand factor, type A; von Willebrand factor type A domain-containing protein 1871907 5311826 Amet_1755 Alkaliphilus metalliredigens QYMF von Willebrand factor type A domain-containing protein YP_001319587.1 1870252 D 293826 CDS YP_001319588.1 150389539 5311828 complement(1873755..1874501) 1 NC_009633.1 PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; KEGG: swo:Swol_0734 ATP binding protein; IstB ATP binding domain-containing protein 1874501 5311828 Amet_1757 Alkaliphilus metalliredigens QYMF IstB ATP binding domain-containing protein YP_001319588.1 1873755 R 293826 CDS YP_001319589.1 150389540 5311829 complement(1874501..1876048) 1 NC_009633.1 PFAM: Integrase, catalytic region; KEGG: pst:PSPTO_2841 ISPsy14, transposase; integrase catalytic subunit 1876048 5311829 Amet_1758 Alkaliphilus metalliredigens QYMF integrase catalytic subunit YP_001319589.1 1874501 R 293826 CDS YP_001319590.1 150389541 5311830 1876562..1877212 1 NC_009633.1 hypothetical protein 1877212 5311830 Amet_1759 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319590.1 1876562 D 293826 CDS YP_001319591.1 150389542 5311831 1877766..1878485 1 NC_009633.1 PFAM: Tellurite resistance protein TehB; thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: btl:BALH_2222 methyltransferase; type 11 methyltransferase 1878485 5311831 Amet_1760 Alkaliphilus metalliredigens QYMF type 11 methyltransferase YP_001319591.1 1877766 D 293826 CDS YP_001319592.1 150389543 5311832 1878559..1878981 1 NC_009633.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: llm:llmg_1077 putative glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 1878981 5311832 Amet_1761 Alkaliphilus metalliredigens QYMF glyoxalase/bleomycin resistance protein/dioxygenase YP_001319592.1 1878559 D 293826 CDS YP_001319593.1 150389544 5311833 1879148..1879381 1 NC_009633.1 hypothetical protein 1879381 5311833 Amet_1762 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319593.1 1879148 D 293826 CDS YP_001319594.1 150389545 5311834 1879534..1880007 1 NC_009633.1 KEGG: ctc:pE88_51 hypothetical membrane-spanning protein; hypothetical protein 1880007 5311834 Amet_1763 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319594.1 1879534 D 293826 CDS YP_001319595.1 150389546 5311835 1880701..1881312 1 NC_009633.1 hypothetical protein 1881312 5311835 Amet_1764 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319595.1 1880701 D 293826 CDS YP_001319596.1 150389547 5311836 1881631..1883184 1 NC_009633.1 PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22); integrase catalytic subunit 1883184 5311836 Amet_1765 Alkaliphilus metalliredigens QYMF integrase catalytic subunit YP_001319596.1 1881631 D 293826 CDS YP_001319597.1 150389548 5311837 1883172..1883915 1 NC_009633.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein; IstB ATP binding domain-containing protein 1883915 5311837 Amet_1766 Alkaliphilus metalliredigens QYMF IstB ATP binding domain-containing protein YP_001319597.1 1883172 D 293826 CDS YP_001319598.1 150389549 5311838 1883919..1884128 1 NC_009633.1 hypothetical protein 1884128 5311838 Amet_1767 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319598.1 1883919 D 293826 CDS YP_001319599.1 150389550 5311839 1884753..1884989 1 NC_009633.1 hypothetical protein 1884989 5311839 Amet_1768 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319599.1 1884753 D 293826 CDS YP_001319600.1 150389551 5311840 1885233..1886336 1 NC_009633.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: dsy:DSY3422 hypothetical protein; DNA-directed DNA polymerase 1886336 5311840 Amet_1769 Alkaliphilus metalliredigens QYMF DNA-directed DNA polymerase YP_001319600.1 1885233 D 293826 CDS YP_001319601.1 150389552 5311841 complement(1886963..1887667) 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bat:BAS0256 DNA-binding response regulator; two component transcriptional regulator 1887667 5311841 Amet_1770 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001319601.1 1886963 R 293826 CDS YP_001319602.1 150389553 5311842 complement(1887721..1889841) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; Diverse 7TM receptor, transmembrane region; KEGG: swo:Swol_1622 response regulator receiver protein; integral membrane sensor signal transduction histidine kinase 1889841 5311842 Amet_1771 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001319602.1 1887721 R 293826 CDS YP_001319603.1 150389554 5311843 1890153..1890542 1 NC_009633.1 PFAM: flagellar protein FlaG protein; KEGG: cth:Cthe_2219 flagellar protein FlaG protein; flagellar protein FlaG protein 1890542 5311843 Amet_1772 Alkaliphilus metalliredigens QYMF flagellar protein FlaG protein YP_001319603.1 1890153 D 293826 CDS YP_001319604.1 150389555 5311844 1890623..1895140 1 NC_009633.1 TIGRFAM: cell wall/surface repeat protein; PFAM: S-layer domain protein; legume lectin, beta domain; KEGG: swo:Swol_0293 hypothetical protein; cell wall/surface repeat-containing protein 1895140 5311844 Amet_1773 Alkaliphilus metalliredigens QYMF cell wall/surface repeat-containing protein YP_001319604.1 1890623 D 293826 CDS YP_001319605.1 150389556 5311845 1895318..1895476 1 NC_009633.1 hypothetical protein 1895476 5311845 Amet_1774 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319605.1 1895318 D 293826 CDS YP_001319606.1 150389557 5311846 complement(1896421..1897191) 1 NC_009633.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: integral membrane protein; hypothetical protein 1897191 5311846 Amet_1775 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319606.1 1896421 R 293826 CDS YP_001319607.1 150389558 5311847 complement(1897176..1897580) 1 NC_009633.1 hypothetical protein 1897580 5311847 Amet_1776 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319607.1 1897176 R 293826 CDS YP_001319608.1 150389559 5311848 complement(1897608..1897913) 1 NC_009633.1 PFAM: IS66 Orf2 family protein; KEGG: swo:Swol_2210 IS66 Orf2 like; IS66 Orf2 family protein 1897913 5311848 Amet_1777 Alkaliphilus metalliredigens QYMF IS66 Orf2 family protein YP_001319608.1 1897608 R 293826 CDS YP_001319609.1 150389560 5311849 complement(1897903..1898241) 1 NC_009633.1 KEGG: swo:Swol_2283 hypothetical protein; hypothetical protein 1898241 5311849 Amet_1778 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319609.1 1897903 R 293826 CDS YP_001319610.1 150389561 5311850 1898467..1899039 1 NC_009633.1 PFAM: regulatory protein, TetR; KEGG: ana:alr1721 transcriptional regulator; TetR family transcriptional regulator 1899039 5311850 Amet_1779 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001319610.1 1898467 D 293826 CDS YP_001319611.1 150389562 5311851 1899141..1899371 1 NC_009633.1 KEGG: xfa:XF2716 ketoreductase; ketoreductase 1899371 5311851 Amet_1780 Alkaliphilus metalliredigens QYMF ketoreductase YP_001319611.1 1899141 D 293826 CDS YP_001319612.1 150389563 5311852 1899376..1899741 1 NC_009633.1 Contains selenocysteine; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mla:Mlab_0618 hypothetical protein; 4Fe-4S ferredoxin 1899741 5311852 Amet_1781 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001319612.1 1899376 D 293826 CDS YP_001319613.1 150389564 5311853 1899849..1900961 1 NC_009633.1 PFAM: metallophosphoesterase; KEGG: mth:MTH1179 hypothetical protein; metallophosphoesterase 1900961 5311853 Amet_1782 Alkaliphilus metalliredigens QYMF metallophosphoesterase YP_001319613.1 1899849 D 293826 CDS YP_001319614.1 150389565 5311854 1900963..1901520 1 NC_009633.1 KEGG: bce:BC4829 ribosomal RNA adenine dimethylase; ribosomal RNA adenine dimethylase 1901520 5311854 Amet_1783 Alkaliphilus metalliredigens QYMF ribosomal RNA adenine dimethylase YP_001319614.1 1900963 D 293826 CDS YP_001319615.1 150389566 5311855 1902249..1902821 1 NC_009633.1 hypothetical protein 1902821 5311855 Amet_1784 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319615.1 1902249 D 293826 CDS YP_001319616.1 150389567 5311856 1903111..1906020 1 NC_009633.1 PFAM: helicase domain protein; DNA primase, small subunit; type III restriction protein, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: dsy:DSY4376 hypothetical protein; type III restriction protein, res subunit 1906020 5311856 Amet_1785 Alkaliphilus metalliredigens QYMF type III restriction protein, res subunit YP_001319616.1 1903111 D 293826 CDS YP_001319617.1 150389568 5311858 1906863..1907333 1 NC_009633.1 hypothetical protein 1907333 5311858 Amet_1787 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319617.1 1906863 D 293826 CDS YP_001319618.1 150389569 5311859 1907675..1908625 1 NC_009633.1 KEGG: cth:Cthe_0744 copper amine oxidase-like protein; hypothetical protein 1908625 5311859 Amet_1788 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319618.1 1907675 D 293826 CDS YP_001319619.1 150389570 5311860 1909801..1910442 1 NC_009633.1 hypothetical protein 1910442 5311860 Amet_1789 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319619.1 1909801 D 293826 CDS YP_001319620.1 150389571 5311861 1910559..1910846 1 NC_009633.1 hypothetical protein 1910846 5311861 Amet_1790 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319620.1 1910559 D 293826 CDS YP_001319621.1 150389572 5311862 1912198..1912470 1 NC_009633.1 KEGG: sat:SYN_03210 transposase and inactivated derivatives; transposase and inactivated derivatives 1912470 5311862 Amet_1791 Alkaliphilus metalliredigens QYMF transposase and inactivated derivatives YP_001319621.1 1912198 D 293826 CDS YP_001319622.1 150389573 5311863 complement(1913002..1913325) 1 NC_009633.1 hypothetical protein 1913325 5311863 Amet_1792 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319622.1 1913002 R 293826 CDS YP_001319623.1 150389574 5311864 complement(1913328..1913684) 1 NC_009633.1 hypothetical protein 1913684 5311864 Amet_1793 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319623.1 1913328 R 293826 CDS YP_001319624.1 150389575 5311865 complement(1913728..1913937) 1 NC_009633.1 KEGG: chy:CHY_0145 hypothetical protein; hypothetical protein 1913937 5311865 Amet_1794 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319624.1 1913728 R 293826 CDS YP_001319625.1 150389576 5311867 1914551..1914868 1 NC_009633.1 hypothetical protein 1914868 5311867 Amet_1796 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319625.1 1914551 D 293826 CDS YP_001319626.1 150389577 5311868 1915025..1915201 1 NC_009633.1 KEGG: cpe:CPE0258 probable transcriptional regulator; hypothetical protein 1915201 5311868 Amet_1797 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319626.1 1915025 D 293826 CDS YP_001319627.1 150389578 5311869 1915404..1915967 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: gka:GK0150 DNA-directed RNA polymerase ECF-type sigma factor (sigma-W); ECF subfamily RNA polymerase sigma-24 factor 1915967 5311869 Amet_1798 Alkaliphilus metalliredigens QYMF ECF subfamily RNA polymerase sigma-24 factor YP_001319627.1 1915404 D 293826 CDS YP_001319628.1 150389579 5311870 1915985..1916707 1 NC_009633.1 KEGG: dsy:DSY2643 hypothetical protein; hypothetical protein 1916707 5311870 Amet_1799 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319628.1 1915985 D 293826 CDS YP_001319629.1 150389580 5311871 1917129..1917695 1 NC_009633.1 hypothetical protein 1917695 5311871 Amet_1800 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319629.1 1917129 D 293826 CDS YP_001319630.1 150389581 5311872 1918054..1918554 1 NC_009633.1 hypothetical protein 1918554 5311872 Amet_1801 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319630.1 1918054 D 293826 CDS YP_001319631.1 150389582 5311873 1918846..1919409 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: ctc:CTC00553 RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 factor 1919409 5311873 Amet_1802 Alkaliphilus metalliredigens QYMF ECF subfamily RNA polymerase sigma-24 factor YP_001319631.1 1918846 D 293826 CDS YP_001319632.1 150389583 5311874 1919427..1920161 1 NC_009633.1 hypothetical protein 1920161 5311874 Amet_1803 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319632.1 1919427 D 293826 CDS YP_001319633.1 150389584 5311875 1920269..1920400 1 NC_009633.1 hypothetical protein 1920400 5311875 Amet_1804 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319633.1 1920269 D 293826 CDS YP_001319634.1 150389585 5311876 1920455..1921027 1 NC_009633.1 hypothetical protein 1921027 5311876 Amet_1805 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319634.1 1920455 D 293826 CDS YP_001319635.1 150389586 5311877 1921153..1921425 1 NC_009633.1 hypothetical protein 1921425 5311877 Amet_1806 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319635.1 1921153 D 293826 CDS YP_001319636.1 150389587 5311878 1921547..1921987 1 NC_009633.1 hypothetical protein 1921987 5311878 Amet_1807 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319636.1 1921547 D 293826 CDS YP_001319637.1 150389588 5311879 1922051..1922716 1 NC_009633.1 hypothetical protein 1922716 5311879 Amet_1808 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319637.1 1922051 D 293826 CDS YP_001319638.1 150389589 5311880 1922754..1923380 1 NC_009633.1 hypothetical protein 1923380 5311880 Amet_1809 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319638.1 1922754 D 293826 CDS YP_001319639.1 150389590 5311881 1923469..1923900 1 NC_009633.1 hypothetical protein 1923900 5311881 Amet_1810 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319639.1 1923469 D 293826 CDS YP_001319640.1 150389591 5311882 1924252..1924476 1 NC_009633.1 hypothetical protein 1924476 5311882 Amet_1811 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319640.1 1924252 D 293826 CDS YP_001319641.1 150389592 5311883 1924625..1925773 1 NC_009633.1 PFAM: peptidase M23B; KEGG: sao:SAOUHSC_02464 hypothetical protein; peptidase M23B 1925773 5311883 Amet_1812 Alkaliphilus metalliredigens QYMF peptidase M23B YP_001319641.1 1924625 D 293826 CDS YP_001319642.1 150389593 5311884 1926089..1926304 1 NC_009633.1 hypothetical protein 1926304 5311884 Amet_1813 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319642.1 1926089 D 293826 CDS YP_001319643.1 150389594 5311885 1926357..1926536 1 NC_009633.1 hypothetical protein 1926536 5311885 Amet_1814 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319643.1 1926357 D 293826 CDS YP_001319644.1 150389595 5311886 1926624..1926959 1 NC_009633.1 hypothetical protein 1926959 5311886 Amet_1815 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319644.1 1926624 D 293826 CDS YP_001319645.1 150389596 5311887 1927011..1927376 1 NC_009633.1 KEGG: ctc:CTC00651 hypothetical protein; hypothetical protein 1927376 5311887 Amet_1816 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319645.1 1927011 D 293826 CDS YP_001319646.1 150389597 5311888 1927466..1928773 1 NC_009633.1 hypothetical protein 1928773 5311888 Amet_1817 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319646.1 1927466 D 293826 CDS YP_001319647.1 150389598 5311889 1929355..1929708 1 NC_009633.1 hypothetical protein 1929708 5311889 Amet_1818 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319647.1 1929355 D 293826 CDS YP_001319648.1 150389599 5311890 1930358..1930633 1 NC_009633.1 hypothetical protein 1930633 5311890 Amet_1819 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319648.1 1930358 D 293826 CDS YP_001319649.1 150389600 5311891 1930667..1931236 1 NC_009633.1 hypothetical protein 1931236 5311891 Amet_1820 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319649.1 1930667 D 293826 CDS YP_001319650.1 150389601 5311892 1931321..1931722 1 NC_009633.1 KEGG: bca:BCE_2809 hypothetical protein; hypothetical protein 1931722 5311892 Amet_1821 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319650.1 1931321 D 293826 CDS YP_001319651.1 150389602 5311893 1931824..1931964 1 NC_009633.1 hypothetical protein 1931964 5311893 Amet_1822 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319651.1 1931824 D 293826 CDS YP_001319652.1 150389603 5311894 1932044..1932601 1 NC_009633.1 hypothetical protein 1932601 5311894 Amet_1823 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319652.1 1932044 D 293826 CDS YP_001319653.1 150389604 5311895 1932770..1933387 1 NC_009633.1 hypothetical protein 1933387 5311895 Amet_1824 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319653.1 1932770 D 293826 CDS YP_001319654.1 150389605 5311896 1933498..1933743 1 NC_009633.1 hypothetical protein 1933743 5311896 Amet_1825 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319654.1 1933498 D 293826 CDS YP_001319655.1 150389606 5311897 1933937..1934401 1 NC_009633.1 hypothetical protein 1934401 5311897 Amet_1826 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319655.1 1933937 D 293826 CDS YP_001319656.1 150389607 5311898 1935690..1936055 1 NC_009633.1 PFAM: regulatory protein, ArsR; KEGG: cth:Cthe_1112 transcriptional regulator, ArsR family; regulatory protein ArsR 1936055 5311898 Amet_1827 Alkaliphilus metalliredigens QYMF regulatory protein ArsR YP_001319656.1 1935690 D 293826 CDS YP_001319657.1 150389608 5311899 1936132..1937205 1 NC_009633.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: cth:Cthe_1111 bile acid:sodium symporter; arsenical-resistance protein 1937205 5311899 Amet_1828 Alkaliphilus metalliredigens QYMF arsenical-resistance protein YP_001319657.1 1936132 D 293826 CDS YP_001319658.1 150389609 5311900 1937246..1937545 1 NC_009633.1 PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: llm:llmg_1247 arsenical resistance operon trans-acting repressor ArsD; arsenical resistance operon trans-acting repressor ArsD 1937545 5311900 Amet_1829 Alkaliphilus metalliredigens QYMF arsenical resistance operon trans-acting repressor ArsD YP_001319658.1 1937246 D 293826 CDS YP_001319659.1 150389610 5311901 1937558..1938445 1 NC_009633.1 TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; KEGG: hwa:HQ2609A probable arsenite efflux ATPase; arsenite-activated ATPase ArsA 1938445 5311901 Amet_1830 Alkaliphilus metalliredigens QYMF arsenite-activated ATPase ArsA YP_001319659.1 1937558 D 293826 CDS YP_001319660.1 150389611 5311902 1938438..1939328 1 NC_009633.1 TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; KEGG: hal:VNG7123 arsenite-transporting ATPase; arsenite-activated ATPase ArsA 1939328 5311902 Amet_1831 Alkaliphilus metalliredigens QYMF arsenite-activated ATPase ArsA YP_001319660.1 1938438 D 293826 CDS YP_001319661.1 150389612 5311903 1939453..1939680 1 NC_009633.1 hypothetical protein 1939680 5311903 Amet_1832 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319661.1 1939453 D 293826 CDS YP_001319662.1 150389613 5311904 1939857..1940573 1 NC_009633.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: cac:CAC1764 predicted glutamine amidotransferase; peptidase C26 1940573 5311904 Amet_1833 Alkaliphilus metalliredigens QYMF peptidase C26 YP_001319662.1 1939857 D 293826 CDS YP_001319663.1 150389614 5311905 1940595..1941521 1 NC_009633.1 PFAM: permease; KEGG: mhu:Mhun_0864 permease; permease 1941521 5311905 Amet_1834 Alkaliphilus metalliredigens QYMF permease YP_001319663.1 1940595 D 293826 CDS YP_001319664.1 150389615 5311906 complement(1941769..1941945) 1 NC_009633.1 hypothetical protein 1941945 5311906 Amet_1835 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319664.1 1941769 R 293826 CDS YP_001319665.1 150389616 5311907 complement(1942089..1942256) 1 NC_009633.1 hypothetical protein 1942256 5311907 Amet_1836 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319665.1 1942089 R 293826 CDS YP_001319666.1 150389617 5311908 complement(1942478..1942816) 1 NC_009633.1 PFAM: regulatory protein, ArsR; KEGG: sfu:Sfum_2884 transcriptional regulator, ArsR family; regulatory protein ArsR 1942816 5311908 Amet_1837 Alkaliphilus metalliredigens QYMF regulatory protein ArsR YP_001319666.1 1942478 R 293826 CDS YP_001319667.1 150389618 5311909 1943119..1944258 1 NC_009633.1 TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mta:Moth_2214 cysteine desulphurase related, unknown function; cysteine desulfurase 1944258 5311909 Amet_1838 Alkaliphilus metalliredigens QYMF cysteine desulfurase YP_001319667.1 1943119 D 293826 CDS YP_001319668.1 150389619 5311910 1944289..1944822 1 NC_009633.1 PFAM: Fe-S cluster domain protein; KEGG: mta:Moth_2213 putative Fe-S cluster; Fe-S cluster domain-containing protein 1944822 5311910 Amet_1839 Alkaliphilus metalliredigens QYMF Fe-S cluster domain-containing protein YP_001319668.1 1944289 D 293826 CDS YP_001319669.1 150389620 5311911 1944864..1945544 1 NC_009633.1 PFAM: permease; KEGG: mhu:Mhun_0862 permease; permease 1945544 5311911 Amet_1840 Alkaliphilus metalliredigens QYMF permease YP_001319669.1 1944864 D 293826 CDS YP_001319670.1 150389621 5311912 1945586..1945930 1 NC_009633.1 PFAM: regulatory protein, ArsR; KEGG: dsy:DSY4679 hypothetical protein; regulatory protein ArsR 1945930 5311912 Amet_1841 Alkaliphilus metalliredigens QYMF regulatory protein ArsR YP_001319670.1 1945586 D 293826 CDS YP_001319671.1 150389622 5311913 complement(1946364..1946846) 1 NC_009633.1 hypothetical protein 1946846 5311913 Amet_1842 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319671.1 1946364 R 293826 CDS YP_001319672.1 150389623 5311914 complement(1947425..1947685) 1 NC_009633.1 hypothetical protein 1947685 5311914 Amet_1843 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319672.1 1947425 R 293826 CDS YP_001319673.1 150389624 5311915 complement(1947731..1947874) 1 NC_009633.1 hypothetical protein 1947874 5311915 Amet_1844 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319673.1 1947731 R 293826 CDS YP_001319674.1 150389625 5311916 1948221..1948586 1 NC_009633.1 KEGG: dsy:DSY0341 hypothetical protein; hypothetical protein 1948586 5311916 Amet_1845 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319674.1 1948221 D 293826 CDS YP_001319675.1 150389626 5311917 1948652..1949587 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY0342 hypothetical protein; ABC transporter-like protein 1949587 5311917 Amet_1846 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319675.1 1948652 D 293826 CDS YP_001319676.1 150389627 5311918 1949622..1950305 1 NC_009633.1 KEGG: dsy:DSY0343 hypothetical protein; hypothetical protein 1950305 5311918 Amet_1847 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319676.1 1949622 D 293826 CDS YP_001319677.1 150389628 5311919 1950305..1951003 1 NC_009633.1 hypothetical protein 1951003 5311919 Amet_1848 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319677.1 1950305 D 293826 CDS YP_001319678.1 150389629 5311920 1951473..1951856 1 NC_009633.1 hypothetical protein 1951856 5311920 Amet_1849 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319678.1 1951473 D 293826 CDS YP_001319679.1 150389630 5311922 1952894..1953406 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sth:STH2043 RNA polymerase ECF-type sigma factor; ECF subfamily RNA polymerase sigma-24 factor 1953406 5311922 Amet_1851 Alkaliphilus metalliredigens QYMF ECF subfamily RNA polymerase sigma-24 factor YP_001319679.1 1952894 D 293826 CDS YP_001319680.1 150389631 5311923 1953378..1954094 1 NC_009633.1 hypothetical protein 1954094 5311923 Amet_1852 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319680.1 1953378 D 293826 CDS YP_001319681.1 150389632 5311924 complement(1954363..1954515) 1 NC_009633.1 hypothetical protein 1954515 5311924 Amet_1853 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319681.1 1954363 R 293826 CDS YP_001319682.1 150389633 5311925 complement(1954645..1954971) 1 NC_009633.1 hypothetical protein 1954971 5311925 Amet_1854 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319682.1 1954645 R 293826 CDS YP_001319683.1 150389634 5311926 1954996..1956474 1 NC_009633.1 PFAM: KWG Leptospira repeat protein; KEGG: ter:Tery_2057 KWG Leptospira; hypothetical protein 1956474 5311926 Amet_1855 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319683.1 1954996 D 293826 CDS YP_001319684.1 150389635 5311927 1956573..1956752 1 NC_009633.1 ECF subfamily RNA polymerase sigma-24 factor 1956752 5311927 Amet_1856 Alkaliphilus metalliredigens QYMF ECF subfamily RNA polymerase sigma-24 factor YP_001319684.1 1956573 D 293826 CDS YP_001319685.1 150389636 5311928 1956899..1957186 1 NC_009633.1 hypothetical protein 1957186 5311928 Amet_1857 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319685.1 1956899 D 293826 CDS YP_001319686.1 150389637 5311929 1957473..1957721 1 NC_009633.1 hypothetical protein 1957721 5311929 Amet_1858 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319686.1 1957473 D 293826 CDS YP_001319687.1 150389638 5311930 1957836..1958012 1 NC_009633.1 hypothetical protein 1958012 5311930 Amet_1859 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319687.1 1957836 D 293826 CDS YP_001319688.1 150389639 5311931 1958309..1958881 1 NC_009633.1 hypothetical protein 1958881 5311931 Amet_1860 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319688.1 1958309 D 293826 CDS YP_001319689.1 150389640 5311932 1959079..1959801 1 NC_009633.1 PFAM: beta-lactamase domain protein; KEGG: afu:AF1748 hypothetical protein; beta-lactamase domain-containing protein 1959801 5311932 Amet_1861 Alkaliphilus metalliredigens QYMF beta-lactamase domain-containing protein YP_001319689.1 1959079 D 293826 CDS YP_001319690.1 150389641 5311934 1960404..1960949 1 NC_009633.1 PFAM: nitroreductase; KEGG: cac:CAC1418 nitroreductase family protein; nitroreductase 1960949 5311934 Amet_1863 Alkaliphilus metalliredigens QYMF nitroreductase YP_001319690.1 1960404 D 293826 CDS YP_001319691.1 150389642 5311937 1962047..1962493 1 NC_009633.1 hypothetical protein 1962493 5311937 Amet_1866 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319691.1 1962047 D 293826 CDS YP_001319692.1 150389643 5311938 1963079..1963387 1 NC_009633.1 hypothetical protein 1963387 5311938 Amet_1867 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319692.1 1963079 D 293826 CDS YP_001319693.1 150389644 5311939 1963813..1963950 1 NC_009633.1 hypothetical protein 1963950 5311939 Amet_1868 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319693.1 1963813 D 293826 CDS YP_001319694.1 150389645 5311940 1964058..1964342 1 NC_009633.1 PFAM: Excinuclease ABC, C subunit domain protein; KEGG: cph:Cpha266_2317 excinuclease ABC, C subunit domain protein; excinuclease ABC subunit C 1964342 5311940 Amet_1869 Alkaliphilus metalliredigens QYMF excinuclease ABC subunit C YP_001319694.1 1964058 D 293826 CDS YP_001319695.1 150389646 5311941 1964741..1965409 1 NC_009633.1 hypothetical protein 1965409 5311941 Amet_1870 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319695.1 1964741 D 293826 CDS YP_001319696.1 150389647 5311942 1965849..1966079 1 NC_009633.1 hypothetical protein 1966079 5311942 Amet_1871 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319696.1 1965849 D 293826 CDS YP_001319697.1 150389648 5311943 1966413..1966787 1 NC_009633.1 hypothetical protein 1966787 5311943 Amet_1872 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319697.1 1966413 D 293826 CDS YP_001319698.1 150389649 5311944 1966928..1967353 1 NC_009633.1 PFAM: regulatory protein, MarR; regulatory protein, ArsR; KEGG: bld:BLi00380 hypothetical protein; MarR family transcriptional regulator 1967353 5311944 Amet_1873 Alkaliphilus metalliredigens QYMF MarR family transcriptional regulator YP_001319698.1 1966928 D 293826 CDS YP_001319699.1 150389650 5311945 1967341..1967670 1 NC_009633.1 KEGG: bld:BLi00381 hypothetical protein; hypothetical protein 1967670 5311945 Amet_1874 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319699.1 1967341 D 293826 CDS YP_001319700.1 150389651 5311947 1968105..1968959 1 NC_009633.1 PFAM: helix-turn-helix protein RpiR; KEGG: tte:TTE1343 transcriptional regulator; RpiR family transcriptional regulator 1968959 5311947 Amet_1876 Alkaliphilus metalliredigens QYMF RpiR family transcriptional regulator YP_001319700.1 1968105 D 293826 CDS YP_001319701.1 150389652 5311948 1969555..1970502 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN0397 dipeptide transport system permease protein dppB; binding-protein-dependent transport system inner membrane protein 1970502 5311948 Amet_1877 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001319701.1 1969555 D 293826 CDS YP_001319702.1 150389653 5311949 1970529..1971491 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN0398 dipeptide transport system permease protein dppC; binding-protein-dependent transport system inner membrane protein 1971491 5311949 Amet_1878 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001319702.1 1970529 D 293826 CDS YP_001319703.1 150389654 5311950 1971507..1972520 1 NC_009633.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: sth:STH2824 oligopeptide ABC transporter ATP-binding protein; oligopeptide/dipeptide ABC transporter ATPase 1972520 5311950 Amet_1879 Alkaliphilus metalliredigens QYMF oligopeptide/dipeptide ABC transporter ATPase YP_001319703.1 1971507 D 293826 CDS YP_001319704.1 150389655 5311951 1972501..1973454 1 NC_009633.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: fnu:FN0400 dipeptide transport ATP-binding protein dppF; oligopeptide/dipeptide ABC transporter ATPase 1973454 5311951 Amet_1880 Alkaliphilus metalliredigens QYMF oligopeptide/dipeptide ABC transporter ATPase YP_001319704.1 1972501 D 293826 CDS YP_001319705.1 150389656 5311952 1973538..1975085 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 5; KEGG: oih:OB3071 oligopeptide ABC transporter oligopeptide-binding protein; extracellular solute-binding protein 1975085 5311952 Amet_1881 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001319705.1 1973538 D 293826 CDS YP_001319706.1 150389657 5311953 1975200..1976165 1 NC_009633.1 PFAM: peptidase M19, renal dipeptidase; KEGG: tte:TTE2129 Zn-dependent dipeptidase, microsomal dipeptidase homolog; peptidase M19 1976165 5311953 Amet_1882 Alkaliphilus metalliredigens QYMF peptidase M19 YP_001319706.1 1975200 D 293826 CDS YP_001319707.1 150389658 5311954 1976250..1977665 1 NC_009633.1 PFAM: amidohydrolase; KEGG: vvy:VVA1170 D-glutamate deacylase; amidohydrolase 1977665 5311954 Amet_1883 Alkaliphilus metalliredigens QYMF amidohydrolase YP_001319707.1 1976250 D 293826 CDS YP_001319708.1 150389659 5311955 1977851..1978921 1 NC_009633.1 PFAM: peptidase S58, DmpA; KEGG: tte:TTE1085 L-aminopeptidase/D-esterase; peptidase S58, DmpA 1978921 5311955 Amet_1884 Alkaliphilus metalliredigens QYMF peptidase S58, DmpA YP_001319708.1 1977851 D 293826 CDS YP_001319709.1 150389660 5311956 1979551..1980528 1 NC_009633.1 PFAM: Bile acid:sodium symporter; KEGG: btk:BT9727_1749 arsenical-resistance protein; possible sodium/bile acid symporter family; bile acid:sodium symporter 1980528 5311956 Amet_1885 Alkaliphilus metalliredigens QYMF bile acid:sodium symporter YP_001319709.1 1979551 D 293826 CDS YP_001319710.1 150389661 5311957 1980795..1982204 1 NC_009633.1 PFAM: cell wall hydrolase/autolysin; copper amine oxidase domain protein; KEGG: cth:Cthe_0185 cell wall hydrolase/autolysin; N-acetylmuramoyl-L-alanine amidase 1982204 5311957 Amet_1886 Alkaliphilus metalliredigens QYMF N-acetylmuramoyl-L-alanine amidase YP_001319710.1 1980795 D 293826 CDS YP_001319711.1 150389662 5311958 1982447..1984099 1 NC_009633.1 PFAM: peptidase S41; KEGG: tte:TTE0406 hypothetical protein; peptidase S41 1984099 5311958 Amet_1887 Alkaliphilus metalliredigens QYMF peptidase S41 YP_001319711.1 1982447 D 293826 CDS YP_001319712.1 150389663 5311959 1984205..1985569 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: wol:WD0563 transposase, IS4 family; transposase, IS4 family protein 1985569 5311959 Amet_1888 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001319712.1 1984205 D 293826 CDS YP_001319713.1 150389664 5311960 1985801..1985935 1 NC_009633.1 hypothetical protein 1985935 5311960 Amet_1889 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319713.1 1985801 D 293826 CDS YP_001319714.1 150389665 5311961 1986088..1986582 1 NC_009633.1 hypothetical protein 1986582 5311961 Amet_1890 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319714.1 1986088 D 293826 CDS YP_001319715.1 150389666 5311962 1987238..1987762 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: ctc:CTC01433 putative RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 factor 1987762 5311962 Amet_1891 Alkaliphilus metalliredigens QYMF ECF subfamily RNA polymerase sigma-24 factor YP_001319715.1 1987238 D 293826 CDS YP_001319716.1 150389667 5311963 1987969..1988334 1 NC_009633.1 hypothetical protein 1988334 5311963 Amet_1892 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319716.1 1987969 D 293826 CDS YP_001319717.1 150389668 5311964 1988525..1988677 1 NC_009633.1 hypothetical protein 1988677 5311964 Amet_1893 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319717.1 1988525 D 293826 CDS YP_001319718.1 150389669 5311965 1988883..1989629 1 NC_009633.1 KEGG: btl:BALH_1554 hypothetical protein; hypothetical protein 1989629 5311965 Amet_1894 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319718.1 1988883 D 293826 CDS YP_001319719.1 150389670 5311966 1989666..1990016 1 NC_009633.1 KEGG: dsy:DSY4235 hypothetical protein; hypothetical protein 1990016 5311966 Amet_1895 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319719.1 1989666 D 293826 CDS YP_001319720.1 150389671 5311967 1990145..1990690 1 NC_009633.1 KEGG: mxa:MXAN_1647 hypothetical protein; hypothetical protein 1990690 5311967 Amet_1896 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319720.1 1990145 D 293826 CDS YP_001319721.1 150389672 5311968 1991296..1991973 1 NC_009633.1 PFAM: manganese and iron superoxide dismutase; KEGG: gka:GK2457 manganese superoxide dismutase; superoxide dismutase 1991973 5311968 Amet_1897 Alkaliphilus metalliredigens QYMF superoxide dismutase YP_001319721.1 1991296 D 293826 CDS YP_001319722.1 150389673 5311970 1992564..1993754 1 NC_009633.1 PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: dsy:DSY3593 hypothetical protein; ATPase 1993754 5311970 Amet_1899 Alkaliphilus metalliredigens QYMF ATPase YP_001319722.1 1992564 D 293826 CDS YP_001319723.1 150389674 5311971 1993751..1994602 1 NC_009633.1 KEGG: dsy:DSY3593 hypothetical protein; hypothetical protein 1994602 5311971 Amet_1900 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319723.1 1993751 D 293826 CDS YP_001319724.1 150389675 5311972 1994637..1995230 1 NC_009633.1 PFAM: helix-turn-helix domain protein; KEGG: dsy:DSY3594 hypothetical protein; XRE family transcriptional regulator 1995230 5311972 Amet_1901 Alkaliphilus metalliredigens QYMF XRE family transcriptional regulator YP_001319724.1 1994637 D 293826 CDS YP_001319725.1 150389676 5311973 1995887..1996519 1 NC_009633.1 KEGG: cth:Cthe_1678 hypothetical protein; chloramphenicol O-acetyltransferase 1996519 5311973 Amet_1902 Alkaliphilus metalliredigens QYMF chloramphenicol O-acetyltransferase YP_001319725.1 1995887 D 293826 CDS YP_001319726.1 150389677 5311974 1997432..1998895 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spa:M6_Spy1165 macrolide-specific ABC-type efflux carrier; ABC transporter-like protein 1998895 5311974 Amet_1903 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319726.1 1997432 D 293826 CDS YP_001319727.1 150389678 5311975 1998936..2000210 1 NC_009633.1 PFAM: major facilitator superfamily MFS_1; KEGG: pab:PAB0724 multidrug resistance protein (multidrug-EF flux transporter); major facilitator superfamily transporter 2000210 5311975 Amet_1904 Alkaliphilus metalliredigens QYMF major facilitator superfamily transporter YP_001319727.1 1998936 D 293826 CDS YP_001319728.1 150389679 5311976 2000286..2001182 1 NC_009633.1 PFAM: aminoglycoside phosphotransferase; KEGG: btk:BT9727_1445 possible macrolide 2-phosphotransferase; aminoglycoside phosphotransferase 2001182 5311976 Amet_1905 Alkaliphilus metalliredigens QYMF aminoglycoside phosphotransferase YP_001319728.1 2000286 D 293826 CDS YP_001319729.1 150389680 5311977 complement(2001320..2001451) 1 NC_009633.1 hypothetical protein 2001451 5311977 Amet_1906 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319729.1 2001320 R 293826 CDS YP_001319730.1 150389681 5311978 complement(2002075..2002845) 1 NC_009633.1 PFAM: alpha/beta hydrolase fold; Ndr family protein; KEGG: chu:CHU_2307 hydrolase, alpha/beta fold family; alpha/beta hydrolase fold protein 2002845 5311978 Amet_1907 Alkaliphilus metalliredigens QYMF alpha/beta hydrolase fold protein YP_001319730.1 2002075 R 293826 CDS YP_001319731.1 150389682 5311979 complement(2002859..2003575) 1 NC_009633.1 PFAM: regulatory protein, TetR; KEGG: sth:STH2336 putative transcriptional regulator; TetR family transcriptional regulator 2003575 5311979 Amet_1908 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001319731.1 2002859 R 293826 CDS YP_001319732.1 150389683 5311980 2004045..2005124 1 NC_009633.1 hypothetical protein 2005124 5311980 Amet_1909 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319732.1 2004045 D 293826 CDS YP_001319733.1 150389684 5311981 complement(2005243..2006703) 1 NC_009633.1 KEGG: ctc:CTC00917 transposase; transposase 2006703 5311981 Amet_1910 Alkaliphilus metalliredigens QYMF transposase YP_001319733.1 2005243 R 293826 CDS YP_001319734.1 150389685 5311982 2006869..2007666 1 NC_009633.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bha:BH0851 transcriptional regulator (AraC/XylS family); helix-turn-helix domain-containing protein 2007666 5311982 Amet_1911 Alkaliphilus metalliredigens QYMF helix-turn-helix domain-containing protein YP_001319734.1 2006869 D 293826 CDS YP_001319735.1 150389686 5311983 2007781..2008668 1 NC_009633.1 PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: cac:CAC3467 uncharacterized conserved protein, PhnB family; 3-demethylubiquinone-9 3-methyltransferase 2008668 5311983 Amet_1912 Alkaliphilus metalliredigens QYMF 3-demethylubiquinone-9 3-methyltransferase YP_001319735.1 2007781 D 293826 CDS YP_001319736.1 150389687 5311984 2008933..2009526 1 NC_009633.1 PFAM: regulatory protein, TetR; KEGG: dsy:DSY4218 hypothetical protein; TetR family transcriptional regulator 2009526 5311984 Amet_1913 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001319736.1 2008933 D 293826 CDS YP_001319737.1 150389688 5311985 2009596..2012202 1 NC_009633.1 PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising protein, mobile region; KEGG: mva:Mvan_2632 pyruvate, water dikinase; pyruvate phosphate dikinase 2012202 5311985 Amet_1914 Alkaliphilus metalliredigens QYMF pyruvate phosphate dikinase YP_001319737.1 2009596 D 293826 CDS YP_001319738.1 150389689 5311986 2012447..2013121 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dsy:DSY3627 hypothetical protein; two component transcriptional regulator 2013121 5311986 Amet_1915 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001319738.1 2012447 D 293826 CDS YP_001319739.1 150389690 5311987 2013118..2014854 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: dsy:DSY3626 hypothetical protein; integral membrane sensor signal transduction histidine kinase 2014854 5311987 Amet_1916 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001319739.1 2013118 D 293826 CDS YP_001319740.1 150389691 5311988 2014955..2015629 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sak:SAK_0174 DNA-binding response regulator; two component transcriptional regulator 2015629 5311988 Amet_1917 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001319740.1 2014955 D 293826 CDS YP_001319741.1 150389692 5311989 2015626..2016675 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: bca:BCE_2042 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2016675 5311989 Amet_1918 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001319741.1 2015626 D 293826 CDS YP_001319742.1 150389693 5311990 2017003..2017950 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mac:MA0853 bacitracin ABC transporter, ATP-binding protein; ABC transporter-like protein 2017950 5311990 Amet_1919 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319742.1 2017003 D 293826 CDS YP_001319743.1 150389694 5311991 2017950..2018666 1 NC_009633.1 KEGG: mac:MA0852 bacitracin ABC transporter, permease protein; bacitracin ABC transporter permease 2018666 5311991 Amet_1920 Alkaliphilus metalliredigens QYMF bacitracin ABC transporter permease YP_001319743.1 2017950 D 293826 CDS YP_001319744.1 150389695 5311992 complement(2019408..2020172) 1 NC_009633.1 PFAM: helix-turn-helix domain protein; bacteriophage CI repressor; KEGG: ecv:APECO1_376 putative repressor protein encoded within prophage CP-933O; XRE family plasmid maintenance system antidote protein 2020172 5311992 Amet_1921 Alkaliphilus metalliredigens QYMF XRE family plasmid maintenance system antidote protein YP_001319744.1 2019408 R 293826 CDS YP_001319745.1 150389696 5311993 2020480..2020659 1 NC_009633.1 hypothetical protein 2020659 5311993 Amet_1922 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319745.1 2020480 D 293826 CDS YP_001319746.1 150389697 5311994 2021005..2021211 1 NC_009633.1 hypothetical protein 2021211 5311994 Amet_1923 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319746.1 2021005 D 293826 CDS YP_001319747.1 150389698 5311995 2021186..2021656 1 NC_009633.1 hypothetical protein 2021656 5311995 Amet_1924 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319747.1 2021186 D 293826 CDS YP_001319748.1 150389699 5311996 2021681..2021905 1 NC_009633.1 KEGG: tte:TTE2173 hypothetical protein; hypothetical protein 2021905 5311996 Amet_1925 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319748.1 2021681 D 293826 CDS YP_001319749.1 150389700 5311998 2024136..2025059 1 NC_009633.1 KEGG: cjr:CJE0269 bacteriophage DNA transposition protein B, putative; hypothetical protein 2025059 5311998 Amet_1927 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319749.1 2024136 D 293826 CDS YP_001319750.1 150389701 5311999 2025059..2025313 1 NC_009633.1 hypothetical protein 2025313 5311999 Amet_1928 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319750.1 2025059 D 293826 CDS YP_001319751.1 150389702 5312000 2025315..2025542 1 NC_009633.1 hypothetical protein 2025542 5312000 Amet_1929 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319751.1 2025315 D 293826 CDS YP_001319752.1 150389703 5312001 2025520..2026275 1 NC_009633.1 hypothetical protein 2026275 5312001 Amet_1930 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319752.1 2025520 D 293826 CDS YP_001319753.1 150389704 5312002 2026277..2026516 1 NC_009633.1 PFAM: SpoVT/AbrB domain protein; KEGG: swo:Swol_0047 transcription regulator AbrB; transcriptional regulator/antitoxin MazE 2026516 5312002 Amet_1931 Alkaliphilus metalliredigens QYMF transcriptional regulator/antitoxin MazE YP_001319753.1 2026277 D 293826 CDS YP_001319754.1 150389705 5312003 2026509..2027162 1 NC_009633.1 hypothetical protein 2027162 5312003 Amet_1932 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319754.1 2026509 D 293826 CDS YP_001319755.1 150389706 5312004 2027212..2027640 1 NC_009633.1 hypothetical protein 2027640 5312004 Amet_1933 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319755.1 2027212 D 293826 CDS YP_001319756.1 150389707 5312005 2027633..2027857 1 NC_009633.1 hypothetical protein 2027857 5312005 Amet_1934 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319756.1 2027633 D 293826 CDS YP_001319757.1 150389708 5312006 2027928..2028089 1 NC_009633.1 hypothetical protein 2028089 5312006 Amet_1935 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319757.1 2027928 D 293826 CDS YP_001319758.1 150389709 5312007 2028103..2028750 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; KEGG: cpr:CPR_1733 RNA polymerase sigma-E factor; FliA/WhiG family RNA polymerase sigma factor 2028750 5312007 Amet_1936 Alkaliphilus metalliredigens QYMF FliA/WhiG family RNA polymerase sigma factor YP_001319758.1 2028103 D 293826 CDS YP_001319759.1 150389710 5312008 2028757..2029158 1 NC_009633.1 KEGG: pol:Bpro_3769 hypothetical protein; hypothetical protein 2029158 5312008 Amet_1937 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319759.1 2028757 D 293826 CDS YP_001319760.1 150389711 5312009 2029452..2029763 1 NC_009633.1 hypothetical protein 2029763 5312009 Amet_1938 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319760.1 2029452 D 293826 CDS YP_001319761.1 150389712 5312010 2029807..2030145 1 NC_009633.1 hypothetical protein 2030145 5312010 Amet_1939 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319761.1 2029807 D 293826 CDS YP_001319762.1 150389713 5312011 2030176..2030397 1 NC_009633.1 hypothetical protein 2030397 5312011 Amet_1940 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319762.1 2030176 D 293826 CDS YP_001319763.1 150389714 5312012 2030423..2030548 1 NC_009633.1 hypothetical protein 2030548 5312012 Amet_1941 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319763.1 2030423 D 293826 CDS YP_001319764.1 150389715 5312013 2030549..2030785 1 NC_009633.1 hypothetical protein 2030785 5312013 Amet_1942 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319764.1 2030549 D 293826 CDS YP_001319765.1 150389716 5312014 2031026..2031502 1 NC_009633.1 PFAM: 3D domain protein; KEGG: bsu:BG13521 similar to cell wall-binding protein; hypothetical protein 2031502 5312014 Amet_1943 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319765.1 2031026 D 293826 CDS YP_001319766.1 150389717 5312015 2031532..2032242 1 NC_009633.1 KEGG: ssa:SSA_0424 exopolysaccharide biosynthesis protein, putative; related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like protein; exopolysaccharide biosynthesis protein 2032242 5312015 Amet_1944 Alkaliphilus metalliredigens QYMF exopolysaccharide biosynthesis protein YP_001319766.1 2031532 D 293826 CDS YP_001319767.1 150389718 5312016 2032362..2033039 1 NC_009633.1 PFAM: cell wall hydrolase/autolysin; KEGG: bld:BLi01974 N-acetylmuramoyl-L-alanine amidase cwlL precursor (Cell wall hydrolase) (Autolysin); RBL04154; cell wall hydrolase/autolysin 2033039 5312016 Amet_1945 Alkaliphilus metalliredigens QYMF cell wall hydrolase/autolysin YP_001319767.1 2032362 D 293826 CDS YP_001319768.1 150389719 5312017 2033093..2033407 1 NC_009633.1 hypothetical protein 2033407 5312017 Amet_1946 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319768.1 2033093 D 293826 CDS YP_001319769.1 150389720 5312018 2033518..2034057 1 NC_009633.1 hypothetical protein 2034057 5312018 Amet_1947 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319769.1 2033518 D 293826 CDS YP_001319770.1 150389721 5312019 2034059..2034352 1 NC_009633.1 hypothetical protein 2034352 5312019 Amet_1948 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319770.1 2034059 D 293826 CDS YP_001319771.1 150389722 5312020 2034354..2034647 1 NC_009633.1 hypothetical protein 2034647 5312020 Amet_1949 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319771.1 2034354 D 293826 CDS YP_001319772.1 150389723 5312021 2034647..2035213 1 NC_009633.1 KEGG: mfa:Mfla_2702 hypothetical protein; hypothetical protein 2035213 5312021 Amet_1950 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319772.1 2034647 D 293826 CDS YP_001319773.1 150389724 5312022 2035227..2035715 1 NC_009633.1 PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; KEGG: tte:TTE0730 Transcription antiterminator; NusG antitermination factor 2035715 5312022 Amet_1951 Alkaliphilus metalliredigens QYMF NusG antitermination factor YP_001319773.1 2035227 D 293826 CDS YP_001319774.1 150389725 5312023 2035972..2037429 1 NC_009633.1 TIGRFAM: phage uncharacterized protein; KEGG: bha:BH3533 hypothetical protein; phage protein 2037429 5312023 Amet_1952 Alkaliphilus metalliredigens QYMF phage protein YP_001319774.1 2035972 D 293826 CDS YP_001319775.1 150389726 5312024 2037447..2038796 1 NC_009633.1 TIGRFAM: phage-associated protein, HI1409 family; KEGG: efa:EF1456 conserved hypothetical protein TIGR01555; phage-associated protein 2038796 5312024 Amet_1953 Alkaliphilus metalliredigens QYMF phage-associated protein YP_001319775.1 2037447 D 293826 CDS YP_001319776.1 150389727 5312025 2038789..2039571 1 NC_009633.1 TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family; PFAM: phage putative head morphogenesis protein, SPP1 gp7; KEGG: efa:EF1457 minor head protein; SPP1 family phage head morphogenesis protein 2039571 5312025 Amet_1954 Alkaliphilus metalliredigens QYMF SPP1 family phage head morphogenesis protein YP_001319776.1 2038789 D 293826 CDS YP_001319777.1 150389728 5312026 2039585..2040688 1 NC_009633.1 KEGG: lin:lin1728 hypothetical protein; hypothetical protein 2040688 5312026 Amet_1955 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319777.1 2039585 D 293826 CDS YP_001319778.1 150389729 5312027 2040704..2041204 1 NC_009633.1 KEGG: efa:EF1462 hypothetical protein; hypothetical protein 2041204 5312027 Amet_1956 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319778.1 2040704 D 293826 CDS YP_001319779.1 150389730 5312028 2041227..2042141 1 NC_009633.1 KEGG: lin:lin1726 hypothetical protein; hypothetical protein 2042141 5312028 Amet_1957 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319779.1 2041227 D 293826 CDS YP_001319780.1 150389731 5312029 2042157..2042489 1 NC_009633.1 hypothetical protein 2042489 5312029 Amet_1958 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319780.1 2042157 D 293826 CDS YP_001319781.1 150389732 5312030 2042492..2042824 1 NC_009633.1 KEGG: lin:lin1724 hypothetical protein; hypothetical protein 2042824 5312030 Amet_1959 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319781.1 2042492 D 293826 CDS YP_001319782.1 150389733 5312031 2042837..2043439 1 NC_009633.1 KEGG: lin:lin1723 hypothetical protein; hypothetical protein 2043439 5312031 Amet_1960 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319782.1 2042837 D 293826 CDS YP_001319783.1 150389734 5312032 2043436..2043798 1 NC_009633.1 hypothetical protein 2043798 5312032 Amet_1961 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319783.1 2043436 D 293826 CDS YP_001319784.1 150389735 5312033 2043795..2044301 1 NC_009633.1 hypothetical protein 2044301 5312033 Amet_1962 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319784.1 2043795 D 293826 CDS YP_001319785.1 150389736 5312034 2044313..2045317 1 NC_009633.1 KEGG: efa:EF1469 hypothetical protein; hypothetical protein 2045317 5312034 Amet_1963 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319785.1 2044313 D 293826 CDS YP_001319786.1 150389737 5312035 2045329..2045733 1 NC_009633.1 KEGG: lin:lin1719 hypothetical protein; hypothetical protein 2045733 5312035 Amet_1964 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319786.1 2045329 D 293826 CDS YP_001319787.1 150389738 5312036 2045789..2046043 1 NC_009633.1 hypothetical protein 2046043 5312036 Amet_1965 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319787.1 2045789 D 293826 CDS YP_001319788.1 150389739 5312037 2046104..2046427 1 NC_009633.1 hypothetical protein 2046427 5312037 Amet_1966 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319788.1 2046104 D 293826 CDS YP_001319789.1 150389740 5312038 2046536..2048293 1 NC_009633.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: dra:DRA0108 minor tail protein GP26-related protein; TP901 family phage tail tape measure protein 2048293 5312038 Amet_1967 Alkaliphilus metalliredigens QYMF TP901 family phage tail tape measure protein YP_001319789.1 2046536 D 293826 CDS YP_001319790.1 150389741 5312039 2048306..2048896 1 NC_009633.1 KEGG: lin:lin1715 hypothetical protein; hypothetical protein 2048896 5312039 Amet_1968 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319790.1 2048306 D 293826 CDS YP_001319791.1 150389742 5312040 2048893..2049222 1 NC_009633.1 KEGG: efa:EF1475 hypothetical protein; hypothetical protein 2049222 5312040 Amet_1969 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319791.1 2048893 D 293826 CDS YP_001319792.1 150389743 5312041 2049209..2049985 1 NC_009633.1 KEGG: lin:lin1713 hypothetical protein; hypothetical protein 2049985 5312041 Amet_1970 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319792.1 2049209 D 293826 CDS YP_001319793.1 150389744 5312042 2049982..2050278 1 NC_009633.1 hypothetical protein 2050278 5312042 Amet_1971 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319793.1 2049982 D 293826 CDS YP_001319794.1 150389745 5312043 2050278..2050640 1 NC_009633.1 KEGG: efa:EF1478 hypothetical protein; hypothetical protein 2050640 5312043 Amet_1972 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319794.1 2050278 D 293826 CDS YP_001319795.1 150389746 5312044 2050633..2051820 1 NC_009633.1 KEGG: efa:EF1479 hypothetical protein; hypothetical protein 2051820 5312044 Amet_1973 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319795.1 2050633 D 293826 CDS YP_001319796.1 150389747 5312045 2051813..2052442 1 NC_009633.1 KEGG: lin:lin1709 hypothetical protein; hypothetical protein 2052442 5312045 Amet_1974 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319796.1 2051813 D 293826 CDS YP_001319797.1 150389748 5312046 2052453..2053022 1 NC_009633.1 KEGG: lin:lin1708 hypothetical protein; hypothetical protein 2053022 5312046 Amet_1975 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319797.1 2052453 D 293826 CDS YP_001319798.1 150389749 5312047 2053024..2053272 1 NC_009633.1 hypothetical protein 2053272 5312047 Amet_1976 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319798.1 2053024 D 293826 CDS YP_001319799.1 150389750 5312048 2053265..2053399 1 NC_009633.1 hypothetical protein 2053399 5312048 Amet_1977 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319799.1 2053265 D 293826 CDS YP_001319800.1 150389751 5312049 join(2053849..2054394,2054396..2054848) 1 NC_009633.1 PFAM: phage integrase domain protein SAM domain protein; KEGG: dsy:DSY2171 hypothetical protein; phage integrase domain/SAM domain-containing protein 2054848 5312049 Amet_1978 Alkaliphilus metalliredigens QYMF phage integrase domain/SAM domain-containing protein YP_001319800.1 2053849 D 293826 CDS YP_001319801.1 150389752 5312050 2055025..2055630 1 NC_009633.1 PFAM: lipolytic protein, G-D-S-L family; KEGG: dsy:DSY3617 hypothetical protein; GDSL family lipase 2055630 5312050 Amet_1979 Alkaliphilus metalliredigens QYMF GDSL family lipase YP_001319801.1 2055025 D 293826 CDS YP_001319802.1 150389753 5312051 2055644..2057050 1 NC_009633.1 PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: dsy:DSY3616 hypothetical protein; membrane bound O-acyl transferase, MBOAT family protein 2057050 5312051 Amet_1980 Alkaliphilus metalliredigens QYMF membrane bound O-acyl transferase, MBOAT family protein YP_001319802.1 2055644 D 293826 CDS YP_001319803.1 150389754 5312052 2057065..2057343 1 NC_009633.1 KEGG: dsy:DSY3615 hypothetical protein; hypothetical protein 2057343 5312052 Amet_1981 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319803.1 2057065 D 293826 CDS YP_001319804.1 150389755 5312053 2057487..2058155 1 NC_009633.1 PFAM: cell wall hydrolase/autolysin; KEGG: cyb:CYB_0360 N-acetylmuramoyl-L-alanine amidase; cell wall hydrolase/autolysin 2058155 5312053 Amet_1982 Alkaliphilus metalliredigens QYMF cell wall hydrolase/autolysin YP_001319804.1 2057487 D 293826 CDS YP_001319805.1 150389756 5312054 2058531..2059088 1 NC_009633.1 PFAM: NADPH-dependent FMN reductase; KEGG: noc:Noc_0094 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 2059088 5312054 Amet_1983 Alkaliphilus metalliredigens QYMF NADPH-dependent FMN reductase YP_001319805.1 2058531 D 293826 CDS YP_001319806.1 150389757 5312055 complement(2059358..2059585) 1 NC_009633.1 KEGG: bat:BAS2654 hypothetical protein; hypothetical protein 2059585 5312055 Amet_1984 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319806.1 2059358 R 293826 CDS YP_001319807.1 150389758 5312056 2060001..2060396 1 NC_009633.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: cno:NT01CX_0005 DNA-binding protein, putative; cupin 2060396 5312056 Amet_1985 Alkaliphilus metalliredigens QYMF cupin YP_001319807.1 2060001 D 293826 CDS YP_001319808.1 150389759 5312057 2060511..2062880 1 NC_009633.1 PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: pca:Pcar_0937 putative formate acetyltransferase; formate C-acetyltransferase 2062880 5312057 Amet_1986 Alkaliphilus metalliredigens QYMF formate C-acetyltransferase YP_001319808.1 2060511 D 293826 CDS YP_001319809.1 150389760 5312058 2062956..2063861 1 NC_009633.1 TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: cno:NT01CX_1221 glycerol dehydratase activator; glycyl-radical activating family protein 2063861 5312058 Amet_1987 Alkaliphilus metalliredigens QYMF glycyl-radical activating family protein YP_001319809.1 2062956 D 293826 CDS YP_001319810.1 150389761 5312059 2064208..2065491 1 NC_009633.1 KEGG: cac:CAC2600 predicted membrane protein; membrane protein 2065491 5312059 Amet_1988 Alkaliphilus metalliredigens QYMF membrane protein YP_001319810.1 2064208 D 293826 CDS YP_001319811.1 150389762 5312060 2065508..2066113 1 NC_009633.1 hypothetical protein 2066113 5312060 Amet_1989 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319811.1 2065508 D 293826 CDS YP_001319812.1 150389763 5312061 complement(2066096..2066278) 1 NC_009633.1 hypothetical protein 2066278 5312061 Amet_1990 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319812.1 2066096 R 293826 CDS YP_001319813.1 150389764 5312062 2066690..2067442 1 NC_009633.1 KEGG: dsy:DSY1520 hypothetical protein; hypothetical protein 2067442 5312062 Amet_1991 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319813.1 2066690 D 293826 CDS YP_001319814.1 150389765 5312063 complement(2067668..2068942) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: dsy:DSY3561 hypothetical protein; integral membrane sensor signal transduction histidine kinase 2068942 5312063 Amet_1992 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001319814.1 2067668 R 293826 CDS YP_001319815.1 150389766 5312064 complement(2068943..2069620) 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: swo:Swol_2177 response regulator receiver protein; two component transcriptional regulator 2069620 5312064 Amet_1993 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001319815.1 2068943 R 293826 CDS YP_001319816.1 150389767 5312065 2069769..2071514 1 NC_009633.1 KEGG: dsy:DSY1218 hypothetical protein; hypothetical protein 2071514 5312065 Amet_1994 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319816.1 2069769 D 293826 CDS YP_001319817.1 150389768 5312066 2071640..2073844 1 NC_009633.1 PFAM: leucine-rich repeat protein; Spore coat protein CotH; KEGG: oih:OB2511 hypothetical protein; spore coat protein CotH 2073844 5312066 Amet_1995 Alkaliphilus metalliredigens QYMF spore coat protein CotH YP_001319817.1 2071640 D 293826 CDS YP_001319818.1 150389769 5312067 2074014..2074802 1 NC_009633.1 KEGG: cth:Cthe_0240 hypothetical protein; hypothetical protein 2074802 5312067 Amet_1996 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319818.1 2074014 D 293826 CDS YP_001319819.1 150389770 5312068 2074751..2075437 1 NC_009633.1 KEGG: cth:Cthe_0730 hypothetical protein; hypothetical protein 2075437 5312068 Amet_1997 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319819.1 2074751 D 293826 CDS YP_001319820.1 150389771 5312069 2075807..2076877 1 NC_009633.1 SMART: leucine-rich repeat-containing protein, typical subtype; KEGG: cte:CT1526 Rab family protein; hypothetical protein 2076877 5312069 Amet_1998 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319820.1 2075807 D 293826 CDS YP_001319821.1 150389772 5312070 2077056..2077517 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV3950 MutT-like protein; N-acetyltransferase GCN5 2077517 5312070 Amet_1999 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001319821.1 2077056 D 293826 CDS YP_001319822.1 150389773 5312071 2078124..2078543 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: bcz:BCZK0942 RNA polymerase sigma-70 factor, ECF family; ECF subfamily RNA polymerase sigma-24 factor 2078543 5312071 Amet_2000 Alkaliphilus metalliredigens QYMF ECF subfamily RNA polymerase sigma-24 factor YP_001319822.1 2078124 D 293826 CDS YP_001319823.1 150389774 5312072 2078533..2079285 1 NC_009633.1 KEGG: cno:NT01CX_1307 hypothetical protein; hypothetical protein 2079285 5312072 Amet_2001 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319823.1 2078533 D 293826 CDS YP_001319824.1 150389775 5312073 2079276..2080142 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1308 ABC transporter ATP-binding protein; ABC transporter-like protein 2080142 5312073 Amet_2002 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319824.1 2079276 D 293826 CDS YP_001319825.1 150389776 5312074 2080143..2081393 1 NC_009633.1 KEGG: cno:NT01CX_1309 hypothetical protein; hypothetical protein 2081393 5312074 Amet_2003 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319825.1 2080143 D 293826 CDS YP_001319826.1 150389777 5312075 2081406..2082659 1 NC_009633.1 KEGG: cno:NT01CX_1305 lipoprotein, putative; hypothetical protein 2082659 5312075 Amet_2004 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319826.1 2081406 D 293826 CDS YP_001319827.1 150389778 5312076 2082889..2083845 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1521 dipeptide transport system permease protein dppB; binding-protein-dependent transport system inner membrane protein 2083845 5312076 Amet_2005 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001319827.1 2082889 D 293826 CDS YP_001319828.1 150389779 5312077 2083832..2084653 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1112 dipeptide transport system permease protein dppC; binding-protein-dependent transport system inner membrane protein 2084653 5312077 Amet_2006 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001319828.1 2083832 D 293826 CDS YP_001319829.1 150389780 5312078 2084701..2086266 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 5; KEGG: fnu:FN1111 dipeptide-binding protein; extracellular solute-binding protein 2086266 5312078 Amet_2007 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001319829.1 2084701 D 293826 CDS YP_001319830.1 150389781 5312079 2086272..2087060 1 NC_009633.1 PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: fnu:FN1524 dipeptide transport ATP-binding protein dppD; ABC transporter-like protein 2087060 5312079 Amet_2008 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319830.1 2086272 D 293826 CDS YP_001319831.1 150389782 5312080 2087053..2088072 1 NC_009633.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: fnu:FN1525 dipeptide transport ATP-binding protein dppF; oligopeptide/dipeptide ABC transporter ATPase 2088072 5312080 Amet_2009 Alkaliphilus metalliredigens QYMF oligopeptide/dipeptide ABC transporter ATPase YP_001319831.1 2087053 D 293826 CDS YP_001319832.1 150389783 5312081 2088050..2088805 1 NC_009633.1 PFAM: UbiE/COQ5 methyltransferase; Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: msu:MS0467 SmtA protein; type 11 methyltransferase 2088805 5312081 Amet_2010 Alkaliphilus metalliredigens QYMF type 11 methyltransferase YP_001319832.1 2088050 D 293826 CDS YP_001319833.1 150389784 5312082 2089110..2090258 1 NC_009633.1 TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mta:Moth_2214 cysteine desulphurase related, unknown function; cysteine desulfurase 2090258 5312082 Amet_2011 Alkaliphilus metalliredigens QYMF cysteine desulfurase YP_001319833.1 2089110 D 293826 CDS YP_001319834.1 150389785 5312083 2090281..2090814 1 NC_009633.1 PFAM: Fe-S cluster domain protein; KEGG: mta:Moth_2213 putative Fe-S cluster; Fe-S cluster domain-containing protein 2090814 5312083 Amet_2012 Alkaliphilus metalliredigens QYMF Fe-S cluster domain-containing protein YP_001319834.1 2090281 D 293826 CDS YP_001319835.1 150389786 5312084 complement(2090960..2091319) 1 NC_009633.1 PFAM: regulatory protein, ArsR; KEGG: mta:Moth_2209 transcriptional regulator, ArsR family; regulatory protein ArsR 2091319 5312084 Amet_2013 Alkaliphilus metalliredigens QYMF regulatory protein ArsR YP_001319835.1 2090960 R 293826 CDS YP_001319836.1 150389787 5312086 complement(2091609..2091998) 1 NC_009633.1 hypothetical protein 2091998 5312086 Amet_2015 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319836.1 2091609 R 293826 CDS YP_001319837.1 150389788 5312087 2093063..2095030 1 NC_009633.1 TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; KEGG: mba:Mbar_A3525 carbon monoxide dehydrogenase; carbon-monoxide dehydrogenase, catalytic subunit 2095030 5312087 Amet_2016 Alkaliphilus metalliredigens QYMF carbon-monoxide dehydrogenase, catalytic subunit YP_001319837.1 2093063 D 293826 CDS YP_001319838.1 150389789 5312088 2095206..2095982 1 NC_009633.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dsy:DSY2631 carbon monoxide dehydrogenase maturation factor; cobyrinic acid a,c-diamide synthase 2095982 5312088 Amet_2017 Alkaliphilus metalliredigens QYMF cobyrinic acid a,c-diamide synthase YP_001319838.1 2095206 D 293826 CDS YP_001319839.1 150389790 5312089 2095979..2097655 1 NC_009633.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 2097655 5312089 Amet_2018 Alkaliphilus metalliredigens QYMF formate--tetrahydrofolate ligase YP_001319839.1 2095979 D 293826 CDS YP_001319840.1 150389791 5312090 2097676..2098305 1 NC_009633.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: chy:CHY_1879 methenyltetrahydrofolate cyclohydrolase; formiminotransferase-cyclodeaminase 2098305 5312090 Amet_2019 Alkaliphilus metalliredigens QYMF formiminotransferase-cyclodeaminase YP_001319840.1 2097676 D 293826 CDS YP_001319841.1 150389792 5312091 2098423..2099277 1 NC_009633.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: chy:CHY_1878 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; methylenetetrahydrofolate dehydrogenase 2099277 5312091 Amet_2020 Alkaliphilus metalliredigens QYMF methylenetetrahydrofolate dehydrogenase YP_001319841.1 2098423 D 293826 CDS YP_001319842.1 150389793 5312092 2099380..2100051 1 NC_009633.1 KEGG: gme:Gmet_1161 hypothetical protein; hypothetical protein 2100051 5312092 Amet_2021 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319842.1 2099380 D 293826 CDS YP_001319843.1 150389794 5312093 2100073..2100954 1 NC_009633.1 PFAM: methylenetetrahydrofolate reductase; KEGG: mbu:Mbur_1847 methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase 2100954 5312093 Amet_2022 Alkaliphilus metalliredigens QYMF methylenetetrahydrofolate reductase YP_001319843.1 2100073 D 293826 CDS YP_001319844.1 150389795 5312094 2100983..2102356 1 NC_009633.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: chy:CHY_0713 alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase; dihydrolipoamide dehydrogenase 2102356 5312094 Amet_2023 Alkaliphilus metalliredigens QYMF dihydrolipoamide dehydrogenase YP_001319844.1 2100983 D 293826 CDS YP_001319845.1 150389796 5312095 2102433..2103206 1 NC_009633.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: chy:CHY_1225 CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC; cobyrinic acid a,c-diamide synthase 2103206 5312095 Amet_2024 Alkaliphilus metalliredigens QYMF cobyrinic acid a,c-diamide synthase YP_001319845.1 2102433 D 293826 CDS YP_001319846.1 150389797 5312096 2103229..2104173 1 NC_009633.1 part of a complex that catalyzes the cleavage of acetyl-CoA; acetyl-CoA decarbonylase/synthase complex subunit delta 2104173 5312096 Amet_2025 Alkaliphilus metalliredigens QYMF acetyl-CoA decarbonylase/synthase complex subunit delta YP_001319846.1 2103229 D 293826 CDS YP_001319847.1 150389798 5312097 2104221..2105588 1 NC_009633.1 part of a complex that catalyzes the cleavage of acetyl-CoA; acetyl-CoA decarbonylase/synthase complex subunit gamma 2105588 5312097 Amet_2026 Alkaliphilus metalliredigens QYMF acetyl-CoA decarbonylase/synthase complex subunit gamma YP_001319847.1 2104221 D 293826 CDS YP_001319848.1 150389799 5312098 2105672..2106457 1 NC_009633.1 PFAM: dihydropteroate synthase, DHPS; KEGG: mta:Moth_1197 dihydropteroate synthase, DhpS; dihydropteroate synthase, DHPS 2106457 5312098 Amet_2027 Alkaliphilus metalliredigens QYMF dihydropteroate synthase, DHPS YP_001319848.1 2105672 D 293826 CDS YP_001319849.1 150389800 5312099 2106481..2108607 1 NC_009633.1 in acetogenic organisms, this enzyme complex converts carbon dioxide to acetyl-CoA while in methanogenic organisms this enzyme is used to degrade acetyl-CoA to form methane and carbon dioxide; part of an enzyme complex; bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta 2108607 5312099 Amet_2028 Alkaliphilus metalliredigens QYMF bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta YP_001319849.1 2106481 D 293826 CDS YP_001319850.1 150389801 5312100 2108703..2109074 1 NC_009633.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H 2109074 5312100 Amet_2029 Alkaliphilus metalliredigens QYMF glycine cleavage system protein H YP_001319850.1 2108703 D 293826 CDS YP_001319851.1 150389802 5312101 2109289..2111241 1 NC_009633.1 PFAM: ferredoxin; KEGG: sfu:Sfum_0999 ferredoxin; ferredoxin 2111241 5312101 Amet_2030 Alkaliphilus metalliredigens QYMF ferredoxin YP_001319851.1 2109289 D 293826 CDS YP_001319852.1 150389803 5312102 2111400..2112080 1 NC_009633.1 KEGG: dsy:DSY2558 hypothetical protein; hypothetical protein 2112080 5312102 Amet_2031 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319852.1 2111400 D 293826 CDS YP_001319853.1 150389804 5312103 complement(2112097..2112465) 1 NC_009633.1 KEGG: hso:HS_1256 periplasmic zinc transporter/adhesin B precursor; periplasmic zinc transporter/adhesin B 2112465 5312103 Amet_2032 Alkaliphilus metalliredigens QYMF periplasmic zinc transporter/adhesin B YP_001319853.1 2112097 R 293826 CDS YP_001319854.1 150389805 5312104 complement(2112494..2112913) 1 NC_009633.1 KEGG: cth:Cthe_1015 hypothetical protein; hypothetical protein 2112913 5312104 Amet_2033 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319854.1 2112494 R 293826 CDS YP_001319855.1 150389806 5312105 complement(2112947..2113135) 1 NC_009633.1 KEGG: sfu:Sfum_0850 hypothetical protein; hypothetical protein 2113135 5312105 Amet_2034 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319855.1 2112947 R 293826 CDS YP_001319856.1 150389807 5312106 2114087..2115724 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 5; KEGG: cya:CYA_0149 peptide/opine/nickel ABC transporter (PepT) family, substrate-binding protein; extracellular solute-binding protein 2115724 5312106 Amet_2035 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001319856.1 2114087 D 293826 CDS YP_001319857.1 150389808 5312107 2115745..2116740 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mma:MM0004 dipeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2116740 5312107 Amet_2036 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001319857.1 2115745 D 293826 CDS YP_001319858.1 150389809 5312108 2116737..2117600 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mba:Mbar_A1343 dipeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2117600 5312108 Amet_2037 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001319858.1 2116737 D 293826 CDS YP_001319859.1 150389810 5312109 2117717..2118670 1 NC_009633.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: dsy:DSY3541 hypothetical protein; oligopeptide/dipeptide ABC transporter ATPase 2118670 5312109 Amet_2038 Alkaliphilus metalliredigens QYMF oligopeptide/dipeptide ABC transporter ATPase YP_001319859.1 2117717 D 293826 CDS YP_001319860.1 150389811 5312110 2118660..2119271 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY4092 hypothetical protein; ABC transporter-like protein 2119271 5312110 Amet_2039 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319860.1 2118660 D 293826 CDS YP_001319861.1 150389812 5312111 2120327..2120752 1 NC_009633.1 PFAM: regulatory protein, MarR; KEGG: dsy:DSY0928 hypothetical protein; MarR family transcriptional regulator 2120752 5312111 Amet_2040 Alkaliphilus metalliredigens QYMF MarR family transcriptional regulator YP_001319861.1 2120327 D 293826 CDS YP_001319862.1 150389813 5312112 2120752..2121606 1 NC_009633.1 PFAM: NmrA family protein; KEGG: lwe:lwe1807 hypothetical protein; NmrA family protein 2121606 5312112 Amet_2041 Alkaliphilus metalliredigens QYMF NmrA family protein YP_001319862.1 2120752 D 293826 CDS YP_001319863.1 150389814 5312113 complement(2121772..2122224) 1 NC_009633.1 PFAM: Lytic transglycosylase, catalytic; KEGG: mxa:MXAN_4034 transglycosylase SLT domain protein; lytic transglycosylase catalytic subunit 2122224 5312113 Amet_2042 Alkaliphilus metalliredigens QYMF lytic transglycosylase catalytic subunit YP_001319863.1 2121772 R 293826 CDS YP_001319864.1 150389815 5312115 2123075..2123470 1 NC_009633.1 KEGG: ppd:Ppro_0806 hypothetical protein; hypothetical protein 2123470 5312115 Amet_2044 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319864.1 2123075 D 293826 CDS YP_001319865.1 150389816 5312116 2123929..2125452 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 5; KEGG: ssa:SSA_0493 ABC-type dipeptide/nickel transport system, periplasmic component, putative; extracellular solute-binding protein 2125452 5312116 Amet_2045 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001319865.1 2123929 D 293826 CDS YP_001319866.1 150389817 5312117 2125496..2126422 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1113 dipeptide transport system permease protein dppB; binding-protein-dependent transport system inner membrane protein 2126422 5312117 Amet_2046 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001319866.1 2125496 D 293826 CDS YP_001319867.1 150389818 5312118 2126428..2127246 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1522 dipeptide transport system permease protein dppC; binding-protein-dependent transport system inner membrane protein 2127246 5312118 Amet_2047 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001319867.1 2126428 D 293826 CDS YP_001319868.1 150389819 5312119 2127248..2128051 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sav:SAV0992 oligopeptide ABC transporter ATP-binding protein homologue; ABC transporter-like protein 2128051 5312119 Amet_2048 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319868.1 2127248 D 293826 CDS YP_001319869.1 150389820 5312120 2128044..2128868 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pmu:PM1906 oligopeptide transport ATP-binding protein; ABC transporter-like protein 2128868 5312120 Amet_2049 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319869.1 2128044 D 293826 CDS YP_001319870.1 150389821 5312121 2128888..2129712 1 NC_009633.1 KEGG: bha:BH2071 hypothetical protein; hypothetical protein 2129712 5312121 Amet_2050 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319870.1 2128888 D 293826 CDS YP_001319871.1 150389822 5312122 2129734..2130531 1 NC_009633.1 KEGG: bha:BH2072 hypothetical protein; hypothetical protein 2130531 5312122 Amet_2051 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319871.1 2129734 D 293826 CDS YP_001319872.1 150389823 5312123 2130553..2131689 1 NC_009633.1 hypothetical protein 2131689 5312123 Amet_2052 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319872.1 2130553 D 293826 CDS YP_001319873.1 150389824 5312124 2131713..2132720 1 NC_009633.1 KEGG: tpe:Tpen_0659 histidyl-tRNA synthetase; histidyl-tRNA synthetase-like protein 2132720 5312124 Amet_2053 Alkaliphilus metalliredigens QYMF histidyl-tRNA synthetase-like protein YP_001319873.1 2131713 D 293826 CDS YP_001319874.1 150389825 5312125 2132752..2133996 1 NC_009633.1 PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; KEGG: plu:plu0116 hypothetical protein; hypothetical protein 2133996 5312125 Amet_2054 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319874.1 2132752 D 293826 CDS YP_001319875.1 150389826 5312126 2134008..2135249 1 NC_009633.1 KEGG: plu:plu0116 hypothetical protein; hypothetical protein 2135249 5312126 Amet_2055 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319875.1 2134008 D 293826 CDS YP_001319876.1 150389827 5312127 2135287..2136639 1 NC_009633.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: fnu:FN1653 Na+ driven multidrug efflux pump; MATE efflux family protein 2136639 5312127 Amet_2056 Alkaliphilus metalliredigens QYMF MATE efflux family protein YP_001319876.1 2135287 D 293826 CDS YP_001319877.1 150389828 5312128 2136675..2137013 1 NC_009633.1 hypothetical protein 2137013 5312128 Amet_2057 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319877.1 2136675 D 293826 CDS YP_001319878.1 150389829 5312129 complement(2137999..2139759) 1 NC_009633.1 PFAM: Lytic transglycosylase, catalytic; KEGG: mxa:MXAN_4034 transglycosylase SLT domain protein; lytic transglycosylase catalytic subunit 2139759 5312129 Amet_2058 Alkaliphilus metalliredigens QYMF lytic transglycosylase catalytic subunit YP_001319878.1 2137999 R 293826 CDS YP_001319879.1 150389830 5312130 complement(2140027..2140611) 1 NC_009633.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: ctc:CTC01899 hypothetical protein; cupin 2140611 5312130 Amet_2059 Alkaliphilus metalliredigens QYMF cupin YP_001319879.1 2140027 R 293826 CDS YP_001319880.1 150389831 5312131 2140908..2142791 1 NC_009633.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: swo:Swol_0306 hypothetical protein; sigma-54 dependent trancsriptional regulator 2142791 5312131 Amet_2060 Alkaliphilus metalliredigens QYMF sigma-54 dependent trancsriptional regulator YP_001319880.1 2140908 D 293826 CDS YP_001319881.1 150389832 5312132 2143239..2144801 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 5; KEGG: fnu:FN0396 dipeptide-binding protein; extracellular solute-binding protein 2144801 5312132 Amet_2061 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001319881.1 2143239 D 293826 CDS YP_001319882.1 150389833 5312133 2144967..2145887 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: btk:BT9727_4233 oligopeptide transport, system permease; binding-protein-dependent transport system inner membrane protein 2145887 5312133 Amet_2062 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001319882.1 2144967 D 293826 CDS YP_001319883.1 150389834 5312134 2145926..2146822 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB3067 oligopeptide ABC transporter permease; binding-protein-dependent transport system inner membrane protein 2146822 5312134 Amet_2063 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001319883.1 2145926 D 293826 CDS YP_001319884.1 150389835 5312135 2146841..2147830 1 NC_009633.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: sth:STH2824 oligopeptide ABC transporter ATP-binding protein; oligopeptide/dipeptide ABC transporter ATPase 2147830 5312135 Amet_2064 Alkaliphilus metalliredigens QYMF oligopeptide/dipeptide ABC transporter ATPase YP_001319884.1 2146841 D 293826 CDS YP_001319885.1 150389836 5312136 2147823..2148800 1 NC_009633.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: oih:OB2452 oligopeptide ABC transporter ATP-binding protein; oligopeptide/dipeptide ABC transporter ATPase 2148800 5312136 Amet_2065 Alkaliphilus metalliredigens QYMF oligopeptide/dipeptide ABC transporter ATPase YP_001319885.1 2147823 D 293826 CDS YP_001319886.1 150389837 5312137 2148901..2150523 1 NC_009633.1 PFAM: NLP/P60 protein; KEGG: cac:CAC0190 beta-lactamase; NLP/P60 protein 2150523 5312137 Amet_2066 Alkaliphilus metalliredigens QYMF NLP/P60 protein YP_001319886.1 2148901 D 293826 CDS YP_001319887.1 150389838 5312138 2150511..2151875 1 NC_009633.1 PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: sus:Acid_4612 D-aminoacylase domain protein; N-acyl-D-amino-acid deacylase 2151875 5312138 Amet_2067 Alkaliphilus metalliredigens QYMF N-acyl-D-amino-acid deacylase YP_001319887.1 2150511 D 293826 CDS YP_001319888.1 150389839 5312139 2151957..2152778 1 NC_009633.1 PFAM: peptidase M55, D-aminopeptidase; KEGG: lwe:lwe0139 D-alanyl-aminopeptidase; peptidase M55, D-aminopeptidase 2152778 5312139 Amet_2068 Alkaliphilus metalliredigens QYMF peptidase M55, D-aminopeptidase YP_001319888.1 2151957 D 293826 CDS YP_001319889.1 150389840 5312140 2153158..2155479 1 NC_009633.1 TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: mgm:Mmc1_2953 multi-sensor hybrid histidine kinase; PAS/PAC sensor hybrid histidine kinase 2155479 5312140 Amet_2069 Alkaliphilus metalliredigens QYMF PAS/PAC sensor hybrid histidine kinase YP_001319889.1 2153158 D 293826 CDS YP_001319890.1 150389841 5312141 2155679..2156287 1 NC_009633.1 PFAM: regulatory protein, TetR; KEGG: bcl:ABC3316 transcriptional regulator, TetR family; TetR family transcriptional regulator 2156287 5312141 Amet_2070 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001319890.1 2155679 D 293826 CDS YP_001319891.1 150389842 5312143 2157300..2157731 1 NC_009633.1 PFAM: regulatory protein, MarR; KEGG: cpr:CPR_1032 transcriptional regulator, MarR family; MarR family transcriptional regulator 2157731 5312143 Amet_2072 Alkaliphilus metalliredigens QYMF MarR family transcriptional regulator YP_001319891.1 2157300 D 293826 CDS YP_001319892.1 150389843 5312144 2157964..2158170 1 NC_009633.1 hypothetical protein 2158170 5312144 Amet_2073 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319892.1 2157964 D 293826 CDS YP_001319893.1 150389844 5312145 2158402..2159610 1 NC_009633.1 PFAM: Extracellular ligand-binding receptor; KEGG: mta:Moth_2502 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2159610 5312145 Amet_2074 Alkaliphilus metalliredigens QYMF extracellular ligand-binding receptor YP_001319893.1 2158402 D 293826 CDS YP_001319894.1 150389845 5312146 2159792..2160670 1 NC_009633.1 PFAM: inner-membrane translocator; KEGG: chy:CHY_2231 high affinity branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 2160670 5312146 Amet_2075 Alkaliphilus metalliredigens QYMF inner-membrane translocator YP_001319894.1 2159792 D 293826 CDS YP_001319895.1 150389846 5312147 2160682..2161578 1 NC_009633.1 PFAM: inner-membrane translocator; KEGG: chy:CHY_2230 high affinity branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 2161578 5312147 Amet_2076 Alkaliphilus metalliredigens QYMF inner-membrane translocator YP_001319895.1 2160682 D 293826 CDS YP_001319896.1 150389847 5312148 2161575..2162348 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH824 branched chain amino acid ABC transporter ATP-binding protein; ABC transporter-like protein 2162348 5312148 Amet_2077 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319896.1 2161575 D 293826 CDS YP_001319897.1 150389848 5312149 2162342..2163064 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chy:CHY_2228 high affinity branched-chain amino acid ABC transporter, ATP-binding protein; ABC transporter-like protein 2163064 5312149 Amet_2078 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319897.1 2162342 D 293826 CDS YP_001319898.1 150389849 5312150 2163447..2164922 1 NC_009633.1 PFAM: protein of unknown function UPF0061; KEGG: btl:BALH_3159 hypothetical protein; hypothetical protein 2164922 5312150 Amet_2079 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319898.1 2163447 D 293826 CDS YP_001319899.1 150389850 5312151 2165166..2165975 1 NC_009633.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN0400 amidohydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 2165975 5312151 Amet_2080 Alkaliphilus metalliredigens QYMF nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001319899.1 2165166 D 293826 CDS YP_001319900.1 150389851 5312152 2166041..2166178 1 NC_009633.1 hypothetical protein 2166178 5312152 Amet_2081 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319900.1 2166041 D 293826 CDS YP_001319901.1 150389852 5312153 2166353..2166547 1 NC_009633.1 PFAM: helix-turn-helix domain protein; KEGG: btl:BALH_0634 transcriptional regulator; XRE family transcriptional regulator 2166547 5312153 Amet_2082 Alkaliphilus metalliredigens QYMF XRE family transcriptional regulator YP_001319901.1 2166353 D 293826 CDS YP_001319902.1 150389853 5312154 2166590..2166874 1 NC_009633.1 hypothetical protein 2166874 5312154 Amet_2083 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319902.1 2166590 D 293826 CDS YP_001319903.1 150389854 5312155 complement(2166954..2167601) 1 NC_009633.1 PFAM: regulatory protein, TetR; KEGG: sma:SAV4701 TetR-family transcriptional regulator; TetR family transcriptional regulator 2167601 5312155 Amet_2084 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001319903.1 2166954 R 293826 CDS YP_001319904.1 150389855 5312156 2167802..2168626 1 NC_009633.1 catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein; methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase 2168626 5312156 Amet_2085 Alkaliphilus metalliredigens QYMF methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase YP_001319904.1 2167802 D 293826 CDS YP_001319905.1 150389856 5312157 2168699..2169349 1 NC_009633.1 PFAM: Methionine synthase, B12-binding module, cap domain protein; cobalamin B12-binding domain protein; KEGG: dsy:DSY0588 hypothetical protein; cobalamin B12-binding domain-containing protein 2169349 5312157 Amet_2086 Alkaliphilus metalliredigens QYMF cobalamin B12-binding domain-containing protein YP_001319905.1 2168699 D 293826 CDS YP_001319906.1 150389857 5312158 2169351..2170508 1 NC_009633.1 KEGG: dsy:DSY2720 hypothetical protein; hypothetical protein 2170508 5312158 Amet_2087 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319906.1 2169351 D 293826 CDS YP_001319907.1 150389858 5312159 2170512..2170664 1 NC_009633.1 hypothetical protein 2170664 5312159 Amet_2088 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319907.1 2170512 D 293826 CDS YP_001319908.1 150389859 5312160 2170754..2172118 1 NC_009633.1 TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: ppe:PEPE_0185 Na+/xyloside symporter related transporter; sugar (glycoside-Pentoside-hexuronide) transporter 2172118 5312160 Amet_2089 Alkaliphilus metalliredigens QYMF sugar (glycoside-Pentoside-hexuronide) transporter YP_001319908.1 2170754 D 293826 CDS YP_001319909.1 150389860 5312161 2172272..2173594 1 NC_009633.1 PFAM: nucleoside recognition domain protein; KEGG: bca:BCE_3131 hypothetical protein; nucleoside recognition domain-containing protein 2173594 5312161 Amet_2090 Alkaliphilus metalliredigens QYMF nucleoside recognition domain-containing protein YP_001319909.1 2172272 D 293826 CDS YP_001319910.1 150389861 5312162 2173878..2174192 1 NC_009633.1 hypothetical protein 2174192 5312162 Amet_2091 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319910.1 2173878 D 293826 CDS YP_001319911.1 150389862 5312163 2174570..2175379 1 NC_009633.1 catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein; methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase 2175379 5312163 Amet_2092 Alkaliphilus metalliredigens QYMF methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase YP_001319911.1 2174570 D 293826 CDS YP_001319912.1 150389863 5312164 2175440..2176090 1 NC_009633.1 PFAM: Methionine synthase, B12-binding module, cap domain protein; cobalamin B12-binding domain protein; KEGG: dsy:DSY0588 hypothetical protein; cobalamin B12-binding domain-containing protein 2176090 5312164 Amet_2093 Alkaliphilus metalliredigens QYMF cobalamin B12-binding domain-containing protein YP_001319912.1 2175440 D 293826 CDS YP_001319913.1 150389864 5312165 2176144..2177508 1 NC_009633.1 KEGG: saz:Sama_1401 sugar (glycoside-pentoside-hexuronide) transporter; Na+/melibiose symporter and related transporter-like protein 2177508 5312165 Amet_2094 Alkaliphilus metalliredigens QYMF Na+/melibiose symporter and related transporter-like protein YP_001319913.1 2176144 D 293826 CDS YP_001319914.1 150389865 5312166 2177634..2178809 1 NC_009633.1 KEGG: dsy:DSY2720 hypothetical protein; hypothetical protein 2178809 5312166 Amet_2095 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319914.1 2177634 D 293826 CDS YP_001319915.1 150389866 5312167 2178824..2178967 1 NC_009633.1 hypothetical protein 2178967 5312167 Amet_2096 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319915.1 2178824 D 293826 CDS YP_001319916.1 150389867 5312168 2179174..2179854 1 NC_009633.1 PFAM: Methionine synthase, B12-binding module, cap domain protein; cobalamin B12-binding domain protein; KEGG: dsy:DSY2717 hypothetical protein; cobalamin B12-binding domain-containing protein 2179854 5312168 Amet_2097 Alkaliphilus metalliredigens QYMF cobalamin B12-binding domain-containing protein YP_001319916.1 2179174 D 293826 CDS YP_001319917.1 150389868 5312169 2179861..2180559 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: dsy:DSY2716 hypothetical protein; GntR family transcriptional regulator 2180559 5312169 Amet_2098 Alkaliphilus metalliredigens QYMF GntR family transcriptional regulator YP_001319917.1 2179861 D 293826 CDS YP_001319918.1 150389869 5312170 2180572..2182362 1 NC_009633.1 PFAM: ferredoxin; KEGG: dsy:DSY2715 hypothetical protein; ferredoxin 2182362 5312170 Amet_2099 Alkaliphilus metalliredigens QYMF ferredoxin YP_001319918.1 2180572 D 293826 CDS YP_001319919.1 150389870 5312171 2182404..2182961 1 NC_009633.1 KEGG: dsy:DSY4699 hypothetical protein; hypothetical protein 2182961 5312171 Amet_2100 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319919.1 2182404 D 293826 CDS YP_001319920.1 150389871 5312172 2183068..2183739 1 NC_009633.1 PFAM: Protein of unknown function DUF1638; KEGG: dsy:DSY2718 hypothetical protein; hypothetical protein 2183739 5312172 Amet_2101 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319920.1 2183068 D 293826 CDS YP_001319921.1 150389872 5312173 2184817..2185377 1 NC_009633.1 hypothetical protein 2185377 5312173 Amet_2102 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319921.1 2184817 D 293826 CDS YP_001319922.1 150389873 5312174 2185595..2186050 1 NC_009633.1 hypothetical protein 2186050 5312174 Amet_2103 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319922.1 2185595 D 293826 CDS YP_001319923.1 150389874 5312175 2186064..2186282 1 NC_009633.1 SMART: helix-turn-helix domain protein; KEGG: bfs:BF4143 putative DNA-binding protein; XRE family transcriptional regulator 2186282 5312175 Amet_2104 Alkaliphilus metalliredigens QYMF XRE family transcriptional regulator YP_001319923.1 2186064 D 293826 CDS YP_001319924.1 150389875 5312176 2186386..2187171 1 NC_009633.1 hypothetical protein 2187171 5312176 Amet_2105 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319924.1 2186386 D 293826 CDS YP_001319925.1 150389876 5312177 2187445..2187963 1 NC_009633.1 hypothetical protein 2187963 5312177 Amet_2106 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319925.1 2187445 D 293826 CDS YP_001319926.1 150389877 5312178 2188022..2188552 1 NC_009633.1 hypothetical protein 2188552 5312178 Amet_2107 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319926.1 2188022 D 293826 CDS YP_001319927.1 150389878 5312180 2188935..2189156 1 NC_009633.1 KEGG: cno:NT01CX_2295 transcription regulator, Cro/CI family -related protein; XRE family transcriptional regulator 2189156 5312180 Amet_2109 Alkaliphilus metalliredigens QYMF XRE family transcriptional regulator YP_001319927.1 2188935 D 293826 CDS YP_001319928.1 150389879 5312181 2189700..2190140 1 NC_009633.1 hypothetical protein 2190140 5312181 Amet_2110 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319928.1 2189700 D 293826 CDS YP_001319929.1 150389880 5312182 2190801..2191097 1 NC_009633.1 KEGG: oih:OB3323 hypothetical protein; hypothetical protein 2191097 5312182 Amet_2111 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319929.1 2190801 D 293826 CDS YP_001319930.1 150389881 5312183 complement(2191464..2191673) 1 NC_009633.1 hypothetical protein 2191673 5312183 Amet_2112 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319930.1 2191464 R 293826 CDS YP_001319931.1 150389882 5312184 complement(2191677..2192420) 1 NC_009633.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein; IstB ATP binding domain-containing protein 2192420 5312184 Amet_2113 Alkaliphilus metalliredigens QYMF IstB ATP binding domain-containing protein YP_001319931.1 2191677 R 293826 CDS YP_001319932.1 150389883 5312185 complement(2192408..2193961) 1 NC_009633.1 PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22); integrase catalytic subunit 2193961 5312185 Amet_2114 Alkaliphilus metalliredigens QYMF integrase catalytic subunit YP_001319932.1 2192408 R 293826 CDS YP_001319933.1 150389884 5312186 2194064..2194312 1 NC_009633.1 hypothetical protein 2194312 5312186 Amet_2115 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319933.1 2194064 D 293826 CDS YP_001319934.1 150389885 5312187 2194804..2194992 1 NC_009633.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 2194992 5312187 Amet_2116 Alkaliphilus metalliredigens QYMF XRE family transcriptional regulator YP_001319934.1 2194804 D 293826 CDS YP_001319935.1 150389886 5312188 2195054..2195371 1 NC_009633.1 hypothetical protein 2195371 5312188 Amet_2117 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319935.1 2195054 D 293826 CDS YP_001319936.1 150389887 5312189 2195501..2196352 1 NC_009633.1 KEGG: saa:SAUSA300_1957 phiPVL ORF046-like protein; hypothetical protein 2196352 5312189 Amet_2118 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319936.1 2195501 D 293826 CDS YP_001319937.1 150389888 5312190 2196330..2197127 1 NC_009633.1 SMART: AAA ATPase; KEGG: cac:CAC1933 hypothetical protein; hypothetical protein 2197127 5312190 Amet_2119 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319937.1 2196330 D 293826 CDS YP_001319938.1 150389889 5312191 2197646..2198056 1 NC_009633.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lpp:lpp0588 hypothetical protein; glutathione transferase 2198056 5312191 Amet_2120 Alkaliphilus metalliredigens QYMF glutathione transferase YP_001319938.1 2197646 D 293826 CDS YP_001319939.1 150389890 5312192 2198369..2199037 1 NC_009633.1 PFAM: Abortive infection protein; KEGG: bat:BAS2703 CAAX amino terminal protease family protein; abortive infection protein 2199037 5312192 Amet_2121 Alkaliphilus metalliredigens QYMF abortive infection protein YP_001319939.1 2198369 D 293826 CDS YP_001319940.1 150389891 5312193 2199346..2200236 1 NC_009633.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sma:SAV6733 serine protease; peptidase S8/S53 subtilisin kexin sedolisin 2200236 5312193 Amet_2122 Alkaliphilus metalliredigens QYMF peptidase S8/S53 subtilisin kexin sedolisin YP_001319940.1 2199346 D 293826 CDS YP_001319941.1 150389892 5312194 complement(2200464..2200793) 1 NC_009633.1 hypothetical protein 2200793 5312194 Amet_2123 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319941.1 2200464 R 293826 CDS YP_001319942.1 150389893 5312195 complement(2200833..2201174) 1 NC_009633.1 hypothetical protein 2201174 5312195 Amet_2124 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319942.1 2200833 R 293826 CDS YP_001319943.1 150389894 5312196 2201859..2202521 1 NC_009633.1 hypothetical protein 2202521 5312196 Amet_2125 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319943.1 2201859 D 293826 CDS YP_001319944.1 150389895 5312197 2202636..2202818 1 NC_009633.1 hypothetical protein 2202818 5312197 Amet_2126 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319944.1 2202636 D 293826 CDS YP_001319945.1 150389896 5312198 2202834..2203301 1 NC_009633.1 KEGG: dsy:DSY1730 hypothetical protein; hypothetical protein 2203301 5312198 Amet_2127 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319945.1 2202834 D 293826 CDS YP_001319946.1 150389897 5312199 2203591..2204130 1 NC_009633.1 KEGG: bha:BH2705 hypothetical protein; hypothetical protein 2204130 5312199 Amet_2128 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319946.1 2203591 D 293826 CDS YP_001319947.1 150389898 5312200 2204258..2204788 1 NC_009633.1 KEGG: mla:Mlab_0185 hypothetical protein; hypothetical protein 2204788 5312200 Amet_2129 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319947.1 2204258 D 293826 CDS YP_001319948.1 150389899 5312201 2204911..2205399 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY2844 hypothetical protein; N-acetyltransferase GCN5 2205399 5312201 Amet_2130 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001319948.1 2204911 D 293826 CDS YP_001319949.1 150389900 5312202 2205437..2205895 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA3643 GnaT-family acetyltransferase; N-acetyltransferase GCN5 2205895 5312202 Amet_2131 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001319949.1 2205437 D 293826 CDS YP_001319950.1 150389901 5312203 complement(2206294..2207499) 1 NC_009633.1 PFAM: transposase IS116/IS110/IS902 family protein; KEGG: gka:GK3301 transposase; transposase IS116/IS110/IS902 family protein 2207499 5312203 Amet_2132 Alkaliphilus metalliredigens QYMF transposase IS116/IS110/IS902 family protein YP_001319950.1 2206294 R 293826 CDS YP_001319951.1 150389902 5312204 2207804..2208046 1 NC_009633.1 KEGG: gka:GK1812 hypothetical protein; hypothetical protein 2208046 5312204 Amet_2133 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319951.1 2207804 D 293826 CDS YP_001319952.1 150389903 5312205 2208048..2208431 1 NC_009633.1 KEGG: gka:GK1811 hypothetical protein; hypothetical protein 2208431 5312205 Amet_2134 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319952.1 2208048 D 293826 CDS YP_001319953.1 150389904 5312206 complement(2208552..2208893) 1 NC_009633.1 hypothetical protein 2208893 5312206 Amet_2135 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319953.1 2208552 R 293826 CDS YP_001319954.1 150389905 5312207 complement(2209384..2209614) 1 NC_009633.1 KEGG: chy:CHY_0145 hypothetical protein; hypothetical protein 2209614 5312207 Amet_2136 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319954.1 2209384 R 293826 CDS YP_001319955.1 150389906 5312208 complement(2209669..2209893) 1 NC_009633.1 hypothetical protein 2209893 5312208 Amet_2137 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319955.1 2209669 R 293826 CDS YP_001319956.1 150389907 5312209 complement(2209943..2210275) 1 NC_009633.1 hypothetical protein 2210275 5312209 Amet_2138 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319956.1 2209943 R 293826 CDS YP_001319957.1 150389908 5312210 complement(2210300..2210659) 1 NC_009633.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: dde:Dde_1882 hypothetical protein; peptidase M15A 2210659 5312210 Amet_2139 Alkaliphilus metalliredigens QYMF peptidase M15A YP_001319957.1 2210300 R 293826 CDS YP_001319958.1 150389909 5312211 2210943..2211329 1 NC_009633.1 hypothetical protein 2211329 5312211 Amet_2140 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319958.1 2210943 D 293826 CDS YP_001319959.1 150389910 5312212 2211590..2211775 1 NC_009633.1 hypothetical protein 2211775 5312212 Amet_2141 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319959.1 2211590 D 293826 CDS YP_001319960.1 150389911 5312213 2211765..2211932 1 NC_009633.1 KEGG: cac:CAC0339 ADP-ribosylglycohydrolase; ADP-ribosylglycohydrolase 2211932 5312213 Amet_2142 Alkaliphilus metalliredigens QYMF ADP-ribosylglycohydrolase YP_001319960.1 2211765 D 293826 CDS YP_001319961.1 150389912 5312214 2212187..2213059 1 NC_009633.1 KEGG: sru:SRU_0541 hypothetical protein; hypothetical protein 2213059 5312214 Amet_2143 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319961.1 2212187 D 293826 CDS YP_001319962.1 150389913 5312215 2214234..2216972 1 NC_009633.1 PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein; RNA polymerase subunit alpha 2216972 5312215 Amet_2144 Alkaliphilus metalliredigens QYMF RNA polymerase subunit alpha YP_001319962.1 2214234 D 293826 CDS YP_001319963.1 150389914 5312216 2216975..2218189 1 NC_009633.1 KEGG: ppe:PEPE_0534 hypothetical protein; hypothetical protein 2218189 5312216 Amet_2145 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319963.1 2216975 D 293826 CDS YP_001319964.1 150389915 5312217 2218182..2220752 1 NC_009633.1 PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: ppe:PEPE_0535 superfamily II DNA/RNA helicase, SNF2 family; helicase domain-containing protein 2220752 5312217 Amet_2146 Alkaliphilus metalliredigens QYMF helicase domain-containing protein YP_001319964.1 2218182 D 293826 CDS YP_001319965.1 150389916 5312218 complement(2221107..2223437) 1 NC_009633.1 KEGG: oih:OB3358 hypothetical protein; hypothetical protein 2223437 5312218 Amet_2147 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319965.1 2221107 R 293826 CDS YP_001319966.1 150389917 5312219 complement(2223509..2223850) 1 NC_009633.1 hypothetical protein 2223850 5312219 Amet_2148 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319966.1 2223509 R 293826 CDS YP_001319967.1 150389918 5312220 complement(2223851..2224354) 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: oih:OB1269 RNA polymerase ECF-type sigma factor; ECF subfamily RNA polymerase sigma-24 factor 2224354 5312220 Amet_2149 Alkaliphilus metalliredigens QYMF ECF subfamily RNA polymerase sigma-24 factor YP_001319967.1 2223851 R 293826 CDS YP_001319968.1 150389919 5312221 2224690..2226084 1 NC_009633.1 KEGG: dsy:DSY0708 hypothetical protein; hypothetical protein 2226084 5312221 Amet_2150 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319968.1 2224690 D 293826 CDS YP_001319969.1 150389920 5312222 2226086..2226712 1 NC_009633.1 KEGG: chy:CHY_1719 hypothetical protein; hypothetical protein 2226712 5312222 Amet_2151 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319969.1 2226086 D 293826 CDS YP_001319970.1 150389921 5312223 2226681..2229926 1 NC_009633.1 KEGG: chy:CHY_1718 MukB N-terminal domain/M protein repeat protein; M protein-like MukB domain-containing protein 2229926 5312223 Amet_2152 Alkaliphilus metalliredigens QYMF M protein-like MukB domain-containing protein YP_001319970.1 2226681 D 293826 CDS YP_001319971.1 150389922 5312224 2229913..2231118 1 NC_009633.1 KEGG: chy:CHY_1717 hypothetical protein; hypothetical protein 2231118 5312224 Amet_2153 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319971.1 2229913 D 293826 CDS YP_001319972.1 150389923 5312225 2231214..2231375 1 NC_009633.1 hypothetical protein 2231375 5312225 Amet_2154 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319972.1 2231214 D 293826 CDS YP_001319973.1 150389924 5312226 2231473..2232708 1 NC_009633.1 PFAM: MscS Mechanosensitive ion channel; KEGG: bfs:BF0722 putative transmembrane transport protein; mechanosensitive ion channel protein MscS 2232708 5312226 Amet_2155 Alkaliphilus metalliredigens QYMF mechanosensitive ion channel protein MscS YP_001319973.1 2231473 D 293826 CDS YP_001319974.1 150389925 5312227 2232746..2233246 1 NC_009633.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cpr:CPR_1097 HDIG/HD domain protein; metal dependent phosphohydrolase 2233246 5312227 Amet_2156 Alkaliphilus metalliredigens QYMF metal dependent phosphohydrolase YP_001319974.1 2232746 D 293826 CDS YP_001319975.1 150389926 5312228 2233401..2233991 1 NC_009633.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: cno:NT01CX_0380 anthranilate synthase component II; glutamine amidotransferase of anthranilate synthase 2233991 5312228 Amet_2157 Alkaliphilus metalliredigens QYMF glutamine amidotransferase of anthranilate synthase YP_001319975.1 2233401 D 293826 CDS YP_001319976.1 150389927 5312229 2233982..2235352 1 NC_009633.1 TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: cno:NT01CX_0379 anthranilate synthase component I; para-aminobenzoate synthase subunit I 2235352 5312229 Amet_2158 Alkaliphilus metalliredigens QYMF para-aminobenzoate synthase subunit I YP_001319976.1 2233982 D 293826 CDS YP_001319977.1 150389928 5312230 2235395..2236213 1 NC_009633.1 PFAM: aminotransferase, class IV; KEGG: cno:NT01CX_0378 4-amino-4-deoxychorismate lyase; class IV aminotransferase 2236213 5312230 Amet_2159 Alkaliphilus metalliredigens QYMF class IV aminotransferase YP_001319977.1 2235395 D 293826 CDS YP_001319978.1 150389929 5312231 2236234..2236800 1 NC_009633.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2236800 folE 5312231 folE Alkaliphilus metalliredigens QYMF GTP cyclohydrolase I YP_001319978.1 2236234 D 293826 CDS YP_001319979.1 150389930 5312232 2236817..2237677 1 NC_009633.1 TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; KEGG: chy:CHY_2383 dihydropteroate synthase; dihydropteroate synthase 2237677 5312232 Amet_2161 Alkaliphilus metalliredigens QYMF dihydropteroate synthase YP_001319979.1 2236817 D 293826 CDS YP_001319980.1 150389931 5312233 2237670..2238029 1 NC_009633.1 TIGRFAM: dihydroneopterin aldolase; KEGG: cth:Cthe_2582 dihydroneopterin aldolase; dihydroneopterin aldolase 2238029 5312233 Amet_2162 Alkaliphilus metalliredigens QYMF dihydroneopterin aldolase YP_001319980.1 2237670 D 293826 CDS YP_001319981.1 150389932 5312234 2238029..2238514 1 NC_009633.1 TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: tte:TTE2369 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2238514 5312234 Amet_2163 Alkaliphilus metalliredigens QYMF 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_001319981.1 2238029 D 293826 CDS YP_001319982.1 150389933 5312235 2238504..2239280 1 NC_009633.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: tte:TTE1013 phospho-2-dehydro-3-deoxyheptonate aldolase; phospho-2-dehydro-3-deoxyheptonate aldolase 2239280 5312235 Amet_2164 Alkaliphilus metalliredigens QYMF phospho-2-dehydro-3-deoxyheptonate aldolase YP_001319982.1 2238504 D 293826 CDS YP_001319983.1 150389934 5312236 2239461..2240687 1 NC_009633.1 PFAM: proteinase inhibitor I4, serpin; KEGG: cth:Cthe_1270 proteinase inhibitor I4, serpin; proteinase inhibitor I4 serpin 2240687 5312236 Amet_2165 Alkaliphilus metalliredigens QYMF proteinase inhibitor I4 serpin YP_001319983.1 2239461 D 293826 CDS YP_001319984.1 150389935 5312237 2240804..2241010 1 NC_009633.1 PFAM: small acid-soluble spore H family protein; KEGG: bld:BLi02904 acid-soluble spore protein H; small acid-soluble spore H family protein 2241010 5312237 Amet_2166 Alkaliphilus metalliredigens QYMF small acid-soluble spore H family protein YP_001319984.1 2240804 D 293826 CDS YP_001319985.1 150389936 5312238 2241251..2241808 1 NC_009633.1 hypothetical protein 2241808 5312238 Amet_2167 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319985.1 2241251 D 293826 CDS YP_001319986.1 150389937 5312239 2241838..2242011 1 NC_009633.1 hypothetical protein 2242011 5312239 Amet_2168 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319986.1 2241838 D 293826 CDS YP_001319987.1 150389938 5312240 2242223..2242822 1 NC_009633.1 KEGG: chu:CHU_2254 hypothetical protein; hypothetical protein 2242822 5312240 Amet_2169 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319987.1 2242223 D 293826 CDS YP_001319988.1 150389939 5312241 2242822..2244255 1 NC_009633.1 PFAM: band 7 protein; KEGG: chu:CHU_2255 hypothetical protein; hypothetical protein 2244255 5312241 Amet_2170 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319988.1 2242822 D 293826 CDS YP_001319989.1 150389940 5312242 2244802..2246112 1 NC_009633.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2246112 5312242 Amet_2171 Alkaliphilus metalliredigens QYMF histidyl-tRNA synthetase YP_001319989.1 2244802 D 293826 CDS YP_001319990.1 150389941 5312243 2246204..2247196 1 NC_009633.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dar:Daro_2825 PAS:GGDEF; PAS/PAC sensor-containing diguanylate cyclase 2247196 5312243 Amet_2172 Alkaliphilus metalliredigens QYMF PAS/PAC sensor-containing diguanylate cyclase YP_001319990.1 2246204 D 293826 CDS YP_001319991.1 150389942 5312244 2247407..2248813 1 NC_009633.1 PFAM: AMMECR1 domain protein; Extradiol ring-cleavage dioxygenase, class III protein, subunit B; KEGG: cac:CAC1420 protein with a fusion of two uncharacterized domains, typical for archaea; hypothetical protein 2248813 5312244 Amet_2173 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319991.1 2247407 D 293826 CDS YP_001319992.1 150389943 5312245 2248830..2249684 1 NC_009633.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cac:CAC1421 pyruvate-formate lyase-activating enzyme; radical SAM domain-containing protein 2249684 5312245 Amet_2174 Alkaliphilus metalliredigens QYMF radical SAM domain-containing protein YP_001319992.1 2248830 D 293826 CDS YP_001319993.1 150389944 5312246 complement(2249708..2251588) 1 NC_009633.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1825 ABC-type multidrug/protein/lipid transport system, ATPase; ABC transporter-like protein 2251588 5312246 Amet_2175 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001319993.1 2249708 R 293826 CDS YP_001319994.1 150389945 5312247 complement(2251585..2253315) 1 NC_009633.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH2016 ABC transporter ATP-binding protein; ABC transporter transmembrane region 2253315 5312247 Amet_2176 Alkaliphilus metalliredigens QYMF ABC transporter transmembrane region YP_001319994.1 2251585 R 293826 CDS YP_001319995.1 150389946 5312248 2253569..2254576 1 NC_009633.1 hypothetical protein 2254576 5312248 Amet_2177 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319995.1 2253569 D 293826 CDS YP_001319996.1 150389947 5312249 2254977..2255633 1 NC_009633.1 KEGG: bha:BH2269 hypothetical protein; hypothetical protein 2255633 5312249 Amet_2178 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319996.1 2254977 D 293826 CDS YP_001319997.1 150389948 5312250 2255814..2256467 1 NC_009633.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: chy:CHY_0004 sporulation associated-membrane protein; 60 kDa inner membrane insertion protein 2256467 5312250 Amet_2179 Alkaliphilus metalliredigens QYMF 60 kDa inner membrane insertion protein YP_001319997.1 2255814 D 293826 CDS YP_001319998.1 150389949 5312251 2256633..2257712 1 NC_009633.1 PFAM: protein of unknown function UPF0118; KEGG: bha:BH2921 hypothetical protein; hypothetical protein 2257712 5312251 Amet_2180 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001319998.1 2256633 D 293826 CDS YP_001319999.1 150389950 5312252 2257935..2258675 1 NC_009633.1 PFAM: RelA/SpoT domain protein; KEGG: bha:BH1885 hypothetical protein; RelA/SpoT domain-containing protein 2258675 5312252 Amet_2181 Alkaliphilus metalliredigens QYMF RelA/SpoT domain-containing protein YP_001319999.1 2257935 D 293826 CDS YP_001320000.1 150389951 5312253 2258921..2259739 1 NC_009633.1 PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: cvi:CV3562 probable ion transporter; Ion transport protein 2259739 5312253 Amet_2182 Alkaliphilus metalliredigens QYMF Ion transport protein YP_001320000.1 2258921 D 293826 CDS YP_001320001.1 150389952 5312254 2259925..2261580 1 NC_009633.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: gka:GK1608 penicillin-binding protein, peptidoglycan glycosyltransferase; 1A family penicillin-binding protein 2261580 5312254 Amet_2183 Alkaliphilus metalliredigens QYMF 1A family penicillin-binding protein YP_001320001.1 2259925 D 293826 CDS YP_001320002.1 150389953 5312255 complement(2261511..2262467) 1 NC_009633.1 PFAM: Resolvase, N-terminal domain; KEGG: cno:NT01CX_1717 site-specific recombinases, DNA invertase Pin-like protein; resolvase domain-containing protein 2262467 5312255 Amet_2184 Alkaliphilus metalliredigens QYMF resolvase domain-containing protein YP_001320002.1 2261511 R 293826 CDS YP_001320003.1 150389954 5312256 complement(2262831..2263046) 1 NC_009633.1 hypothetical protein 2263046 5312256 Amet_2185 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320003.1 2262831 R 293826 CDS YP_001320004.1 150389955 5312257 complement(2263116..2263583) 1 NC_009633.1 PFAM: helix-turn-helix domain protein; KEGG: cno:NT01CX_1719 helix-turn-helix domain protein; XRE family transcriptional regulator 2263583 5312257 Amet_2186 Alkaliphilus metalliredigens QYMF XRE family transcriptional regulator YP_001320004.1 2263116 R 293826 CDS YP_001320005.1 150389956 5312258 2263887..2264834 1 NC_009633.1 PFAM: Helix-turn-helix, type 11 domain protein; KEGG: btl:BALH_0837 hypothetical protein; helix-turn-helix, type 11 domain-containing protein 2264834 5312258 Amet_2187 Alkaliphilus metalliredigens QYMF helix-turn-helix, type 11 domain-containing protein YP_001320005.1 2263887 D 293826 CDS YP_001320006.1 150389957 5312259 complement(2265010..2266470) 1 NC_009633.1 KEGG: ctc:CTC00917 transposase; transposase 2266470 5312259 Amet_2188 Alkaliphilus metalliredigens QYMF transposase YP_001320006.1 2265010 R 293826 CDS YP_001320007.1 150389958 5312260 2266591..2267364 1 NC_009633.1 TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57; KEGG: ctc:CTC01142 hypothetical protein; CRISPR-associated Cas family protein 2267364 5312260 Amet_2189 Alkaliphilus metalliredigens QYMF CRISPR-associated Cas family protein YP_001320007.1 2266591 D 293826 CDS YP_001320008.1 150389959 5312261 2267378..2269042 1 NC_009633.1 TIGRFAM: CRISPR-associated CXXC_CXXC protein Cst1; KEGG: aae:aq_372 putative protein; CRISPR-associated Cst1 family protein 2269042 5312261 Amet_2190 Alkaliphilus metalliredigens QYMF CRISPR-associated Cst1 family protein YP_001320008.1 2267378 D 293826 CDS YP_001320009.1 150389960 5312262 2269042..2269926 1 NC_009633.1 TIGRFAM: CRISPR-associated autoregulator DevR family; CRISPR-associated regulatory protein, DevR family; KEGG: aae:aq_374 hypothetical protein; CRISPR-associated autoregulator DevR family protein 2269926 5312262 Amet_2191 Alkaliphilus metalliredigens QYMF CRISPR-associated autoregulator DevR family protein YP_001320009.1 2269042 D 293826 CDS YP_001320010.1 150389961 5312263 2269913..2270692 1 NC_009633.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: ctc:CTC01145 hypothetical protein; CRISPR-associated Cas5 family protein 2270692 5312263 Amet_2192 Alkaliphilus metalliredigens QYMF CRISPR-associated Cas5 family protein YP_001320010.1 2269913 D 293826 CDS YP_001320011.1 150389962 5312264 2270714..2272945 1 NC_009633.1 TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; PFAM: metal-dependent phosphohydrolase, HD sub domain; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cpr:CPR_0922 CRISPR-associated helicase Cas3 domain protein; metal dependent phosphohydrolase 2272945 5312264 Amet_2193 Alkaliphilus metalliredigens QYMF metal dependent phosphohydrolase YP_001320011.1 2270714 D 293826 CDS YP_001320012.1 150389963 5312265 2272969..2273460 1 NC_009633.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: ctc:CTC01147 hypothetical protein; CRISPR-associated Cas4 family protein 2273460 5312265 Amet_2194 Alkaliphilus metalliredigens QYMF CRISPR-associated Cas4 family protein YP_001320012.1 2272969 D 293826 CDS YP_001320013.1 150389964 5312266 2273471..2274463 1 NC_009633.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: fnu:FN1177 hypothetical protein; CRISPR-associated Cas1 family protein 2274463 5312266 Amet_2195 Alkaliphilus metalliredigens QYMF CRISPR-associated Cas1 family protein YP_001320013.1 2273471 D 293826 CDS YP_001320014.1 150389965 5312267 2274468..2274746 1 NC_009633.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: fnu:FN1176 hypothetical cytosolic protein; CRISPR-associated Cas2 family protein 2274746 5312267 Amet_2196 Alkaliphilus metalliredigens QYMF CRISPR-associated Cas2 family protein YP_001320014.1 2274468 D 293826 CDS YP_001320015.1 150389966 5312269 2279941..2280327 1 NC_009633.1 KEGG: btl:BALH_2715 hypothetical protein; hypothetical protein 2280327 5312269 Amet_2198 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320015.1 2279941 D 293826 CDS YP_001320016.1 150389967 5312270 2280371..2280862 1 NC_009633.1 PFAM: protein of unknown function DUF45; KEGG: bat:BAS0322 hypothetical protein; hypothetical protein 2280862 5312270 Amet_2199 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320016.1 2280371 D 293826 CDS YP_001320017.1 150389968 5312271 complement(2280993..2282021) 1 NC_009633.1 KEGG: cac:CAC0978 possible elongation subunit of DNA-dependent DNA polymerase; exonuclease-like protein 2282021 5312271 Amet_2200 Alkaliphilus metalliredigens QYMF exonuclease-like protein YP_001320017.1 2280993 R 293826 CDS YP_001320018.1 150389969 5312272 2282193..2283719 1 NC_009633.1 PFAM: S-layer domain protein; KEGG: cth:Cthe_2809 glycoside hydrolase, family 16; S-layer protein 2283719 5312272 Amet_2201 Alkaliphilus metalliredigens QYMF S-layer protein YP_001320018.1 2282193 D 293826 CDS YP_001320019.1 150389970 5312273 2283915..2285951 1 NC_009633.1 PFAM: UvrD/REP helicase; KEGG: sth:STH611 ATP-dependent DNA helicase; UvrD/REP helicase 2285951 5312273 Amet_2202 Alkaliphilus metalliredigens QYMF UvrD/REP helicase YP_001320019.1 2283915 D 293826 CDS YP_001320020.1 150389971 5312274 complement(2285968..2286960) 1 NC_009633.1 PFAM: Asparaginase/glutaminase; KEGG: cac:CAC1714 L-asparaginase; asparaginase/glutaminase 2286960 5312274 Amet_2203 Alkaliphilus metalliredigens QYMF asparaginase/glutaminase YP_001320020.1 2285968 R 293826 CDS YP_001320021.1 150389972 5312275 2287325..2287936 1 NC_009633.1 PFAM: protein of unknown function DUF1121; KEGG: cno:NT01CX_1623 hypothetical protein; hypothetical protein 2287936 5312275 Amet_2204 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320021.1 2287325 D 293826 CDS YP_001320022.1 150389973 5312276 2288156..2289313 1 NC_009633.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cpf:CPF_1667 aminotransferase, class V; class V aminotransferase 2289313 5312276 Amet_2205 Alkaliphilus metalliredigens QYMF class V aminotransferase YP_001320022.1 2288156 D 293826 CDS YP_001320023.1 150389974 5312277 2289321..2290499 1 NC_009633.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 2290499 5312277 Amet_2206 Alkaliphilus metalliredigens QYMF thiamine biosynthesis protein ThiI YP_001320023.1 2289321 D 293826 CDS YP_001320024.1 150389975 5312278 2290520..2290999 1 NC_009633.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: cac:CAC1992 molybdenum cofactor biosynthesis enzyme, MoaC; molybdenum cofactor biosynthesis protein C 2290999 5312278 Amet_2207 Alkaliphilus metalliredigens QYMF molybdenum cofactor biosynthesis protein C YP_001320024.1 2290520 D 293826 CDS YP_001320025.1 150389976 5312279 complement(2291114..2291620) 1 NC_009633.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: mta:Moth_2132 molybdopterin binding domain; molybdenum cofactor synthesis domain-containing protein 2291620 5312279 Amet_2208 Alkaliphilus metalliredigens QYMF molybdenum cofactor synthesis domain-containing protein YP_001320025.1 2291114 R 293826 CDS YP_001320026.1 150389977 5312280 2291762..2292109 1 NC_009633.1 PFAM: membrane protein of unknown function; KEGG: pna:Pnap_3918 membrane protein of unknown function; hypothetical protein 2292109 5312280 Amet_2209 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320026.1 2291762 D 293826 CDS YP_001320027.1 150389978 5312281 complement(2292119..2292865) 1 NC_009633.1 TIGRFAM: pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein; KEGG: btk:BT9727_0425 formate acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme); pyruvate formate-lyase activating enzyme 2292865 5312281 Amet_2210 Alkaliphilus metalliredigens QYMF pyruvate formate-lyase activating enzyme YP_001320027.1 2292119 R 293826 CDS YP_001320028.1 150389979 5312282 complement(2292979..2295213) 1 NC_009633.1 TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: cya:CYA_0477 formate acetyltransferase; formate acetyltransferase 2295213 5312282 Amet_2211 Alkaliphilus metalliredigens QYMF formate acetyltransferase YP_001320028.1 2292979 R 293826 CDS YP_001320029.1 150389980 5312283 2295499..2295834 1 NC_009633.1 TIGRFAM: anti-anti-sigma factor; Anti-sigma F factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cpr:CPR_2022 anti-sigma F factor antagonist; anti-sigma-factor antagonist 2295834 5312283 Amet_2212 Alkaliphilus metalliredigens QYMF anti-sigma-factor antagonist YP_001320029.1 2295499 D 293826 CDS YP_001320030.1 150389981 5312284 2295849..2296286 1 NC_009633.1 binds to sigma F preventing its association with RNA polymerase during sporulation; anti-sigma F factor 2296286 5312284 Amet_2213 Alkaliphilus metalliredigens QYMF anti-sigma F factor YP_001320030.1 2295849 D 293826 CDS YP_001320031.1 150389982 5312285 2296296..2297072 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-F type; RNA polymerase sigma-70; RNA polymerase sigma-B/F/G type; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: ctc:CTC02246 RNA polymerase sigma-F factor; FliA/WhiG family RNA polymerase sigma factor 2297072 5312285 Amet_2214 Alkaliphilus metalliredigens QYMF FliA/WhiG family RNA polymerase sigma factor YP_001320031.1 2296296 D 293826 CDS YP_001320032.1 150389983 5312286 2297164..2297346 1 NC_009633.1 hypothetical protein 2297346 5312286 Amet_2215 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320032.1 2297164 D 293826 CDS YP_001320033.1 150389984 5312287 2297387..2297968 1 NC_009633.1 KEGG: bce:BC4070 stage V sporulation protein AA; stage V sporulation protein AA 2297968 5312287 Amet_2216 Alkaliphilus metalliredigens QYMF stage V sporulation protein AA YP_001320033.1 2297387 D 293826 CDS YP_001320034.1 150389985 5312288 2297961..2298371 1 NC_009633.1 KEGG: bce:BC4069 stage V sporulation protein AB; stage V sporulation protein AB 2298371 5312288 Amet_2217 Alkaliphilus metalliredigens QYMF stage V sporulation protein AB YP_001320034.1 2297961 D 293826 CDS YP_001320035.1 150389986 5312289 2298412..2298570 1 NC_009633.1 hypothetical protein 2298570 5312289 Amet_2218 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320035.1 2298412 D 293826 CDS YP_001320036.1 150389987 5312290 2298589..2299044 1 NC_009633.1 TIGRFAM: Sporulation stage V, protein AC; PFAM: SpoVA protein; KEGG: tte:TTE1319 spore formation protein spoVAC; sporulation stage V, protein AC 2299044 5312290 Amet_2219 Alkaliphilus metalliredigens QYMF sporulation stage V, protein AC YP_001320036.1 2298589 D 293826 CDS YP_001320037.1 150389988 5312291 2299053..2300078 1 NC_009633.1 PFAM: Stage V sporulation AD family protein; KEGG: tte:TTE1320 spore formation protein spoVAD; stage V sporulation protein AD 2300078 5312291 Amet_2220 Alkaliphilus metalliredigens QYMF stage V sporulation protein AD YP_001320037.1 2299053 D 293826 CDS YP_001320038.1 150389989 5312292 2300099..2300455 1 NC_009633.1 TIGRFAM: Sporulation stage V, protein AE; PFAM: SpoVA protein; KEGG: cno:NT01CX_1809 stage V sporulation protein AE; sporulation stage V, protein AE 2300455 5312292 Amet_2221 Alkaliphilus metalliredigens QYMF sporulation stage V, protein AE YP_001320038.1 2300099 D 293826 CDS YP_001320039.1 150389990 5312293 2300468..2301037 1 NC_009633.1 KEGG: sth:STH1811 stage V sporulation protein AE; stage V sporulation protein AE 2301037 5312293 Amet_2222 Alkaliphilus metalliredigens QYMF stage V sporulation protein AE YP_001320039.1 2300468 D 293826 CDS YP_001320040.1 150389991 5312294 complement(2301167..2303794) 1 NC_009633.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: cth:Cthe_1760 penicillin-binding protein, 1A family; 1A family penicillin-binding protein 2303794 5312294 Amet_2223 Alkaliphilus metalliredigens QYMF 1A family penicillin-binding protein YP_001320040.1 2301167 R 293826 CDS YP_001320041.1 150389992 5312295 2304047..2304724 1 NC_009633.1 TIGRFAM: Sporulation protein YunB; KEGG: tte:TTE1683 hypothetical protein; sporulation protein YunB 2304724 5312295 Amet_2224 Alkaliphilus metalliredigens QYMF sporulation protein YunB YP_001320041.1 2304047 D 293826 CDS YP_001320042.1 150389993 5312296 2304856..2306145 1 NC_009633.1 PFAM: GTP-binding protein, HSR1-related; KEGG: cac:CAC2299 predicted GTPase, HflX; HSR1-like GTP-binding protein 2306145 5312296 Amet_2225 Alkaliphilus metalliredigens QYMF HSR1-like GTP-binding protein YP_001320042.1 2304856 D 293826 CDS YP_001320043.1 150389994 5312297 2306172..2306852 1 NC_009633.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: cno:NT01CX_1817 hypothetical protein; HEAT repeat-containing PBS lyase 2306852 5312297 Amet_2226 Alkaliphilus metalliredigens QYMF HEAT repeat-containing PBS lyase YP_001320043.1 2306172 D 293826 CDS YP_001320044.1 150389995 5312298 complement(2306849..2307310) 1 NC_009633.1 KEGG: cac:CAC0449 hypothetical protein; hypothetical protein 2307310 5312298 Amet_2227 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320044.1 2306849 R 293826 CDS YP_001320045.1 150389996 5312299 2307540..2307971 1 NC_009633.1 PFAM: NUDIX hydrolase; KEGG: tte:TTE1129 NTP pyrophosphohydrolase including oxidative damage repair enzyme; NUDIX hydrolase 2307971 5312299 Amet_2228 Alkaliphilus metalliredigens QYMF NUDIX hydrolase YP_001320045.1 2307540 D 293826 CDS YP_001320046.1 150389997 5312300 2308045..2308695 1 NC_009633.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: tte:TTE1130 hypothetical protein; hypothetical protein 2308695 5312300 Amet_2229 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320046.1 2308045 D 293826 CDS YP_001320047.1 150389998 5312301 2308750..2309142 1 NC_009633.1 PFAM: CoA-binding domain protein; KEGG: tte:TTE1131 predicted CoA-binding protein; CoA-binding domain-containing protein 2309142 5312301 Amet_2230 Alkaliphilus metalliredigens QYMF CoA-binding domain-containing protein YP_001320047.1 2308750 D 293826 CDS YP_001320048.1 150389999 5312302 complement(2309161..2309529) 1 NC_009633.1 KEGG: cth:Cthe_1214 hypothetical protein; hypothetical protein 2309529 5312302 Amet_2231 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320048.1 2309161 R 293826 CDS YP_001320049.1 150390000 5312303 complement(2309526..2309894) 1 NC_009633.1 KEGG: cth:Cthe_1215 permease; permease 2309894 5312303 Amet_2232 Alkaliphilus metalliredigens QYMF permease YP_001320049.1 2309526 R 293826 CDS YP_001320050.1 150390001 5312304 2310072..2311001 1 NC_009633.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: bld:BLi00089 cysteine synthetase A; RBL03196; cysteine synthase A 2311001 5312304 Amet_2233 Alkaliphilus metalliredigens QYMF cysteine synthase A YP_001320050.1 2310072 D 293826 CDS YP_001320051.1 150390002 5312305 2311198..2311941 1 NC_009633.1 TIGRFAM: NAD+ synthetase; PFAM: NAD+ synthase; KEGG: gka:GK2596 NH(3)-dependent NAD+ synthetase; NAD+ synthetase 2311941 5312305 Amet_2234 Alkaliphilus metalliredigens QYMF NAD+ synthetase YP_001320051.1 2311198 D 293826 CDS YP_001320052.1 150390003 5312306 2312037..2312792 1 NC_009633.1 PFAM: protein of unknown function DUF28; KEGG: cno:NT01CX_1819 hypothetical protein; hypothetical protein 2312792 5312306 Amet_2235 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320052.1 2312037 D 293826 CDS YP_001320053.1 150390004 5312307 2313145..2313384 1 NC_009633.1 hypothetical protein 2313384 5312307 Amet_2236 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320053.1 2313145 D 293826 CDS YP_001320054.1 150390005 5312308 2313600..2314664 1 NC_009633.1 PFAM: phage integrase family protein; KEGG: gfo:orf943 phage integrase family protein; phage integrase family protein 2314664 5312308 Amet_2237 Alkaliphilus metalliredigens QYMF phage integrase family protein YP_001320054.1 2313600 D 293826 CDS YP_001320055.1 150390006 5312309 2314792..2315631 1 NC_009633.1 KEGG: maq:Maqu_3292 hypothetical protein; hypothetical protein 2315631 5312309 Amet_2238 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320055.1 2314792 D 293826 CDS YP_001320056.1 150390007 5312310 2315786..2316310 1 NC_009633.1 hypothetical protein 2316310 5312310 Amet_2239 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320056.1 2315786 D 293826 CDS YP_001320057.1 150390008 5312311 2316646..2317140 1 NC_009633.1 KEGG: bca:BCE_0425 aminoglycoside nucleotidyltransferase, putative; aminoglycoside nucleotidyltransferase 2317140 5312311 Amet_2240 Alkaliphilus metalliredigens QYMF aminoglycoside nucleotidyltransferase YP_001320057.1 2316646 D 293826 CDS YP_001320058.1 150390009 5312312 2317550..2318074 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC2487 predicted acetyltransferase; N-acetyltransferase GCN5 2318074 5312312 Amet_2241 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001320058.1 2317550 D 293826 CDS YP_001320059.1 150390010 5312313 2318518..2319354 1 NC_009633.1 KEGG: cth:Cthe_3135 hypothetical protein; hypothetical protein 2319354 5312313 Amet_2242 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320059.1 2318518 D 293826 CDS YP_001320060.1 150390011 5312314 2319701..2319967 1 NC_009633.1 hypothetical protein 2319967 5312314 Amet_2243 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320060.1 2319701 D 293826 CDS YP_001320061.1 150390012 5312315 2320456..2320899 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: oih:OB0309 6'-N-acetyltransferase; N-acetyltransferase GCN5 2320899 5312315 Amet_2244 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001320061.1 2320456 D 293826 CDS YP_001320062.1 150390013 5312316 2320943..2321818 1 NC_009633.1 hypothetical protein 2321818 5312316 Amet_2245 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320062.1 2320943 D 293826 CDS YP_001320063.1 150390014 5312317 2322146..2322568 1 NC_009633.1 hypothetical protein 2322568 5312317 Amet_2246 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320063.1 2322146 D 293826 CDS YP_001320064.1 150390015 5312318 2322594..2322932 1 NC_009633.1 hypothetical protein 2322932 5312318 Amet_2247 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320064.1 2322594 D 293826 CDS YP_001320065.1 150390016 5312319 2323013..2323318 1 NC_009633.1 hypothetical protein 2323318 5312319 Amet_2248 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320065.1 2323013 D 293826 CDS YP_001320066.1 150390017 5312320 2323662..2324330 1 NC_009633.1 hypothetical protein 2324330 5312320 Amet_2249 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320066.1 2323662 D 293826 CDS YP_001320067.1 150390018 5312321 2324681..2326015 1 NC_009633.1 KEGG: cth:Cthe_3229 transposase, IS4; hypothetical protein 2326015 5312321 Amet_2250 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320067.1 2324681 D 293826 CDS YP_001320068.1 150390019 5312322 2326188..2326640 1 NC_009633.1 hypothetical protein 2326640 5312322 Amet_2251 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320068.1 2326188 D 293826 CDS YP_001320069.1 150390020 5312323 2326936..2327445 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tde:TDE1101 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2327445 5312323 Amet_2252 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001320069.1 2326936 D 293826 CDS YP_001320070.1 150390021 5312324 complement(2327830..2329290) 1 NC_009633.1 KEGG: tte:TTE2242 transposase; transposase 2329290 5312324 Amet_2253 Alkaliphilus metalliredigens QYMF transposase YP_001320070.1 2327830 R 293826 CDS YP_001320071.1 150390022 5312325 2329453..2330049 1 NC_009633.1 hypothetical protein 2330049 5312325 Amet_2254 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320071.1 2329453 D 293826 CDS YP_001320072.1 150390023 5312326 2330224..2330625 1 NC_009633.1 hypothetical protein 2330625 5312326 Amet_2255 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320072.1 2330224 D 293826 CDS YP_001320073.1 150390024 5312327 2331024..2331656 1 NC_009633.1 hypothetical protein 2331656 5312327 Amet_2256 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320073.1 2331024 D 293826 CDS YP_001320074.1 150390025 5312328 complement(2332155..2332349) 1 NC_009633.1 PFAM: helix-turn-helix domain protein; KEGG: swo:Swol_2033 hypothetical protein; XRE family transcriptional regulator 2332349 5312328 Amet_2257 Alkaliphilus metalliredigens QYMF XRE family transcriptional regulator YP_001320074.1 2332155 R 293826 CDS YP_001320075.1 150390026 5312329 2333053..2333625 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bcl:ABC1140 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2333625 5312329 Amet_2258 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001320075.1 2333053 D 293826 CDS YP_001320076.1 150390027 5312330 2334113..2334844 1 NC_009633.1 hypothetical protein 2334844 5312330 Amet_2259 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320076.1 2334113 D 293826 CDS YP_001320077.1 150390028 5312331 2334960..2335610 1 NC_009633.1 hypothetical protein 2335610 5312331 Amet_2260 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320077.1 2334960 D 293826 CDS YP_001320078.1 150390029 5312332 2335780..2336265 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bsu:BG14084 similar to hypothetical proteins from B. subtilis; N-acetyltransferase GCN5 2336265 5312332 Amet_2261 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001320078.1 2335780 D 293826 CDS YP_001320079.1 150390030 5312333 2336604..2337242 1 NC_009633.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mmp:MMP0541 phosphoserine phosphatase; HAD family hydrolase 2337242 5312333 Amet_2262 Alkaliphilus metalliredigens QYMF HAD family hydrolase YP_001320079.1 2336604 D 293826 CDS YP_001320080.1 150390031 5312334 2337379..2339358 1 NC_009633.1 KEGG: son:SO4644.1 hypothetical protein; hypothetical protein 2339358 5312334 Amet_2263 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320080.1 2337379 D 293826 CDS YP_001320081.1 150390032 5312335 2339556..2339987 1 NC_009633.1 hypothetical protein 2339987 5312335 Amet_2264 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320081.1 2339556 D 293826 CDS YP_001320082.1 150390033 5312336 2340162..2341115 1 NC_009633.1 hypothetical protein 2341115 5312336 Amet_2265 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320082.1 2340162 D 293826 CDS YP_001320083.1 150390034 5312337 2341239..2342198 1 NC_009633.1 KEGG: shm:Shewmr7_3104 hypothetical protein; hypothetical protein 2342198 5312337 Amet_2266 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320083.1 2341239 D 293826 CDS YP_001320084.1 150390035 5312338 2342420..2343097 1 NC_009633.1 KEGG: mgm:Mmc1_1825 hypothetical protein; hypothetical protein 2343097 5312338 Amet_2267 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320084.1 2342420 D 293826 CDS YP_001320085.1 150390036 5312339 2343190..2344539 1 NC_009633.1 KEGG: fra:Francci3_4013 transposase, IS4; hypothetical protein 2344539 5312339 Amet_2268 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320085.1 2343190 D 293826 CDS YP_001320086.1 150390037 5312340 2344906..2345163 1 NC_009633.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: cac:CAC2475 possible 5-Nitroimidazole antibiotics resistance protein, NimA-family; pyridoxamine 5'-phosphate oxidase-like protein 2345163 5312340 Amet_2269 Alkaliphilus metalliredigens QYMF pyridoxamine 5'-phosphate oxidase-like protein YP_001320086.1 2344906 D 293826 CDS YP_001320087.1 150390038 5312341 2345628..2345828 1 NC_009633.1 KEGG: rfe:RF_0424 excinuclease ABC, C subunit, N-terminal; excinuclease ABC subunit C, N-terminal protein 2345828 5312341 Amet_2270 Alkaliphilus metalliredigens QYMF excinuclease ABC subunit C, N-terminal protein YP_001320087.1 2345628 D 293826 CDS YP_001320088.1 150390039 5312342 2346000..2346131 1 NC_009633.1 hypothetical protein 2346131 5312342 Amet_2271 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320088.1 2346000 D 293826 CDS YP_001320089.1 150390040 5312344 2346604..2346843 1 NC_009633.1 hypothetical protein 2346843 5312344 Amet_2273 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320089.1 2346604 D 293826 CDS YP_001320090.1 150390041 5312345 2347157..2348071 1 NC_009633.1 PFAM: Sporulation domain protein; sporulation domain-containing protein 2348071 5312345 Amet_2274 Alkaliphilus metalliredigens QYMF sporulation domain-containing protein YP_001320090.1 2347157 D 293826 CDS YP_001320091.1 150390042 5312346 2348090..2348446 1 NC_009633.1 KEGG: tte:TTE0885 hypothetical protein; hypothetical protein 2348446 5312346 Amet_2275 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320091.1 2348090 D 293826 CDS YP_001320092.1 150390043 5312347 2348494..2348919 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; KEGG: tte:TTE0886 anti-sigma regulatory factor (Ser/Thr protein kinase); putative anti-sigma regulatory factor 2348919 5312347 Amet_2276 Alkaliphilus metalliredigens QYMF putative anti-sigma regulatory factor YP_001320092.1 2348494 D 293826 CDS YP_001320093.1 150390044 5312348 2348943..2349287 1 NC_009633.1 KEGG: cth:Cthe_0336 DRTGG domain containing protein; HPr kinase 2349287 5312348 Amet_2277 Alkaliphilus metalliredigens QYMF HPr kinase YP_001320093.1 2348943 D 293826 CDS YP_001320094.1 150390045 5312349 2349284..2350018 1 NC_009633.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cth:Cthe_0337 PHP-like protein; phosphotransferase domain-containing protein 2350018 5312349 Amet_2278 Alkaliphilus metalliredigens QYMF phosphotransferase domain-containing protein YP_001320094.1 2349284 D 293826 CDS YP_001320095.1 150390046 5312350 2350062..2350607 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; KEGG: cth:Cthe_0339 histidine kinase; histidine kinase 2350607 5312350 Amet_2279 Alkaliphilus metalliredigens QYMF histidine kinase YP_001320095.1 2350062 D 293826 CDS YP_001320096.1 150390047 5312351 2350892..2352220 1 NC_009633.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: cno:NT01CX_1579 RnfC/NqrF; RnfABCDGE type electron transport complex subunit C 2352220 5312351 Amet_2280 Alkaliphilus metalliredigens QYMF RnfABCDGE type electron transport complex subunit C YP_001320096.1 2350892 D 293826 CDS YP_001320097.1 150390048 5312352 2352240..2353193 1 NC_009633.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: ctc:CTC01020 RnfD/NqrB; RnfABCDGE type electron transport complex subunit D 2353193 5312352 Amet_2281 Alkaliphilus metalliredigens QYMF RnfABCDGE type electron transport complex subunit D YP_001320097.1 2352240 D 293826 CDS YP_001320098.1 150390049 5312353 2353186..2353719 1 NC_009633.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: ctc:CTC01021 rnfG/nqrC; RnfABCDGE type electron transport complex subunit G 2353719 5312353 Amet_2282 Alkaliphilus metalliredigens QYMF RnfABCDGE type electron transport complex subunit G YP_001320098.1 2353186 D 293826 CDS YP_001320099.1 150390050 5312354 2353743..2354372 1 NC_009633.1 TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: cpe:CPE1063 probable Na-translocating NADH-quinone reductase; RnfABCDGE type electron transport complex subunit E 2354372 5312354 Amet_2283 Alkaliphilus metalliredigens QYMF RnfABCDGE type electron transport complex subunit E YP_001320099.1 2353743 D 293826 CDS YP_001320100.1 150390051 5312355 2354376..2354966 1 NC_009633.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: mgm:Mmc1_0690 electron transport complex, RnfABCDGE type, A subunit; RnfABCDGE type electron transport complex subunit A 2354966 5312355 Amet_2284 Alkaliphilus metalliredigens QYMF RnfABCDGE type electron transport complex subunit A YP_001320100.1 2354376 D 293826 CDS YP_001320101.1 150390052 5312356 2354979..2355965 1 NC_009633.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: ctc:CTC01024 rnfB/polyferredoxin; RnfABCDGE type electron transport complex subunit B 2355965 5312356 Amet_2285 Alkaliphilus metalliredigens QYMF RnfABCDGE type electron transport complex subunit B YP_001320101.1 2354979 D 293826 CDS YP_001320102.1 150390053 5312357 2356141..2356662 1 NC_009633.1 PFAM: Heptaprenyl diphosphate synthase component I; KEGG: tte:TTE2484 hypothetical protein; heptaprenyl diphosphate synthase component I 2356662 5312357 Amet_2286 Alkaliphilus metalliredigens QYMF heptaprenyl diphosphate synthase component I YP_001320102.1 2356141 D 293826 CDS YP_001320103.1 150390054 5312358 2356684..2356932 1 NC_009633.1 KEGG: tte:TTE0895 hypothetical protein; hypothetical protein 2356932 5312358 Amet_2287 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320103.1 2356684 D 293826 CDS YP_001320104.1 150390055 5312359 2356941..2357519 1 NC_009633.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: cth:Cthe_0087 maf protein; maf protein 2357519 5312359 Amet_2288 Alkaliphilus metalliredigens QYMF maf protein YP_001320104.1 2356941 D 293826 CDS YP_001320105.1 150390056 5312360 2357544..2358242 1 NC_009633.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 2358242 radC 5312360 radC Alkaliphilus metalliredigens QYMF DNA repair protein RadC YP_001320105.1 2357544 D 293826 CDS YP_001320106.1 150390057 5312361 2358271..2359302 1 NC_009633.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 2359302 5312361 Amet_2290 Alkaliphilus metalliredigens QYMF rod shape-determining protein MreB YP_001320106.1 2358271 D 293826 CDS YP_001320107.1 150390058 5312362 2359318..2360160 1 NC_009633.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 2360160 5312362 Amet_2291 Alkaliphilus metalliredigens QYMF rod shape-determining protein MreC YP_001320107.1 2359318 D 293826 CDS YP_001320108.1 150390059 5312363 2360162..2360659 1 NC_009633.1 KEGG: tte:TTE0900 hypothetical protein; hypothetical protein 2360659 5312363 Amet_2292 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320108.1 2360162 D 293826 CDS YP_001320109.1 150390060 5312364 2360676..2363528 1 NC_009633.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: tte:TTE0901 cell division protein FtsI/penicillin-binding protein 2; penicillin-binding protein, transpeptidase 2363528 5312364 Amet_2293 Alkaliphilus metalliredigens QYMF penicillin-binding protein, transpeptidase YP_001320109.1 2360676 D 293826 CDS YP_001320110.1 150390061 5312365 2363666..2364298 1 NC_009633.1 TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: tte:TTE0902 septum formation inhibitor; septum site-determining protein MinC 2364298 5312365 Amet_2294 Alkaliphilus metalliredigens QYMF septum site-determining protein MinC YP_001320110.1 2363666 D 293826 CDS YP_001320111.1 150390062 5312366 2364324..2365121 1 NC_009633.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: cth:Cthe_0093 septum site-determining protein MinD; septum site-determining protein MinD 2365121 5312366 Amet_2295 Alkaliphilus metalliredigens QYMF septum site-determining protein MinD YP_001320111.1 2364324 D 293826 CDS YP_001320112.1 150390063 5312367 2365141..2365425 1 NC_009633.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 2365425 5312367 Amet_2296 Alkaliphilus metalliredigens QYMF cell division topological specificity factor MinE YP_001320112.1 2365141 D 293826 CDS YP_001320113.1 150390064 5312368 2365443..2365847 1 NC_009633.1 TIGRFAM: methylglyoxal synthase; PFAM: MGS domain protein; KEGG: oih:OB1767 methylglyoxal synthase; methylglyoxal synthase 2365847 5312368 Amet_2297 Alkaliphilus metalliredigens QYMF methylglyoxal synthase YP_001320113.1 2365443 D 293826 CDS YP_001320114.1 150390065 5312369 2366061..2366756 1 NC_009633.1 PFAM: peptidase M23B; KEGG: cth:Cthe_0097 peptidase M23B; peptidase M23B 2366756 5312369 Amet_2298 Alkaliphilus metalliredigens QYMF peptidase M23B YP_001320114.1 2366061 D 293826 CDS YP_001320115.1 150390066 5312370 2366784..2367701 1 NC_009633.1 PFAM: peptidase M50; KEGG: tte:TTE0908 Zn-dependent protease; peptidase M50 2367701 5312370 Amet_2299 Alkaliphilus metalliredigens QYMF peptidase M50 YP_001320115.1 2366784 D 293826 CDS YP_001320116.1 150390067 5312371 2367780..2369621 1 NC_009633.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_0156 radical SAM; radical SAM domain-containing protein 2369621 5312371 Amet_2300 Alkaliphilus metalliredigens QYMF radical SAM domain-containing protein YP_001320116.1 2367780 D 293826 CDS YP_001320117.1 150390068 5312372 2369618..2370358 1 NC_009633.1 KEGG: dsy:DSY3168 hypothetical protein; hypothetical protein 2370358 5312372 Amet_2301 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320117.1 2369618 D 293826 CDS YP_001320118.1 150390069 5312373 2370370..2371872 1 NC_009633.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: cth:Cthe_0158 ribonuclease, Rne/Rng family; ribonuclease 2371872 5312373 Amet_2302 Alkaliphilus metalliredigens QYMF ribonuclease YP_001320118.1 2370370 D 293826 CDS YP_001320119.1 150390070 5312374 2372001..2372312 1 NC_009633.1 PFAM: ribosomal protein L21; KEGG: cpr:CPR_2097 ribosomal protein L21; 50S ribosomal protein L21 2372312 rplU 5312374 rplU Alkaliphilus metalliredigens QYMF 50S ribosomal protein L21 YP_001320119.1 2372001 D 293826 CDS YP_001320120.1 150390071 5312375 2372323..2372655 1 NC_009633.1 PFAM: protein of unknown function DUF464; KEGG: tte:TTE0914 predicted ribosomal protein; hypothetical protein 2372655 5312375 Amet_2304 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320120.1 2372323 D 293826 CDS YP_001320121.1 150390072 5312376 2372659..2372955 1 NC_009633.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 2372955 rpmA 5312376 rpmA Alkaliphilus metalliredigens QYMF 50S ribosomal protein L27 YP_001320121.1 2372659 D 293826 CDS YP_001320122.1 150390073 5312377 2373112..2373687 1 NC_009633.1 KEGG: ctc:CTC02057 hypothetical protein; signal transduction histidine kinase regulating citrate/malate metabolism 2373687 5312377 Amet_2306 Alkaliphilus metalliredigens QYMF signal transduction histidine kinase regulating citrate/malate metabolism YP_001320122.1 2373112 D 293826 CDS YP_001320123.1 150390074 5312378 2373829..2375112 1 NC_009633.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein, HSR1-related; GTP1/OBG sub domain protein; GTP1/OBG-like; KEGG: cth:Cthe_0163 GTP1/OBG subdomain containing protein; GTP-binding protein Obg/CgtA 2375112 5312378 Amet_2307 Alkaliphilus metalliredigens QYMF GTP-binding protein Obg/CgtA YP_001320123.1 2373829 D 293826 CDS YP_001320124.1 150390075 5312379 2375169..2375510 1 NC_009633.1 PFAM: protein of unknown function UPF0044; KEGG: cth:Cthe_0164 protein of unknown function UPF0044; hypothetical protein 2375510 5312379 Amet_2308 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320124.1 2375169 D 293826 CDS YP_001320125.1 150390076 5312380 2375714..2376406 1 NC_009633.1 TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; KEGG: tte:TTE0918 nicotinate-nucleotide adenylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 2376406 5312380 Amet_2309 Alkaliphilus metalliredigens QYMF nicotinate (nicotinamide) nucleotide adenylyltransferase YP_001320125.1 2375714 D 293826 CDS YP_001320126.1 150390077 5312381 2376399..2376974 1 NC_009633.1 PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cpe:CPE2124 hypothetical protein; metal dependent phosphohydrolase 2376974 5312381 Amet_2310 Alkaliphilus metalliredigens QYMF metal dependent phosphohydrolase YP_001320126.1 2376399 D 293826 CDS YP_001320127.1 150390078 5312382 2377020..2378183 1 NC_009633.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tte:TTE0920 transcriptional regulator; cell envelope-related transcriptional attenuator 2378183 5312382 Amet_2311 Alkaliphilus metalliredigens QYMF cell envelope-related transcriptional attenuator YP_001320127.1 2377020 D 293826 CDS YP_001320128.1 150390079 5312383 2378481..2379485 1 NC_009633.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: mbu:Mbur_0831 K+-dependent Na+/Ca+ exchanger related-protein; CaCA family Na(+)/Ca(+) antiporter 2379485 5312383 Amet_2312 Alkaliphilus metalliredigens QYMF CaCA family Na(+)/Ca(+) antiporter YP_001320128.1 2378481 D 293826 CDS YP_001320129.1 150390080 5312384 2379507..2379875 1 NC_009633.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: cth:Cthe_1238 iojap-like protein; iojap family protein 2379875 5312384 Amet_2313 Alkaliphilus metalliredigens QYMF iojap family protein YP_001320129.1 2379507 D 293826 CDS YP_001320130.1 150390081 5312385 2380216..2382690 1 NC_009633.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: cth:Cthe_1237 leucyl-tRNA synthetase; leucyl-tRNA synthetase 2382690 5312385 Amet_2314 Alkaliphilus metalliredigens QYMF leucyl-tRNA synthetase YP_001320130.1 2380216 D 293826 CDS YP_001320131.1 150390082 5312386 2382701..2383348 1 NC_009633.1 PFAM: YheO domain protein; KEGG: tte:TTE0922 hypothetical protein; YheO domain-containing protein 2383348 5312386 Amet_2315 Alkaliphilus metalliredigens QYMF YheO domain-containing protein YP_001320131.1 2382701 D 293826 CDS YP_001320132.1 150390083 5312387 2383370..2383750 1 NC_009633.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: fnu:FN1973 translation initiation inhibitor; putative endoribonuclease L-PSP 2383750 5312387 Amet_2316 Alkaliphilus metalliredigens QYMF putative endoribonuclease L-PSP YP_001320132.1 2383370 D 293826 CDS YP_001320133.1 150390084 5312388 2383901..2384569 1 NC_009633.1 TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: amino acid-binding ACT domain protein; serine dehydratase beta chain; KEGG: cpf:CPF_2959 L-serine dehydratase, iron-sulfur-dependent, beta subunit; L-serine dehydratase, iron-sulfur-dependent subunit beta 2384569 5312388 Amet_2317 Alkaliphilus metalliredigens QYMF L-serine dehydratase, iron-sulfur-dependent subunit beta YP_001320133.1 2383901 D 293826 CDS YP_001320134.1 150390085 5312389 2384592..2385467 1 NC_009633.1 TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: serine dehydratase alpha chain; KEGG: ctc:CTC01982 L-serine dehydratase alpha subunit; L-serine dehydratase, iron-sulfur-dependent subunit alpha 2385467 5312389 Amet_2318 Alkaliphilus metalliredigens QYMF L-serine dehydratase, iron-sulfur-dependent subunit alpha YP_001320134.1 2384592 D 293826 CDS YP_001320135.1 150390086 5312390 complement(2385512..2386837) 1 NC_009633.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: tte:TTE0925 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 2386837 5312390 Amet_2319 Alkaliphilus metalliredigens QYMF serine-type D-Ala-D-Ala carboxypeptidase YP_001320135.1 2385512 R 293826 CDS YP_001320136.1 150390087 5312391 2387010..2387639 1 NC_009633.1 TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: chy:CHY_0402 competence protein; helix-hairpin-helix repeat-containing competence protein ComEA 2387639 5312391 Amet_2320 Alkaliphilus metalliredigens QYMF helix-hairpin-helix repeat-containing competence protein ComEA YP_001320136.1 2387010 D 293826 CDS YP_001320137.1 150390088 5312392 2387745..2388704 1 NC_009633.1 TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cpf:CPF_2374 selenide, water dikinase; selenide, water dikinase 2388704 5312392 Amet_2321 Alkaliphilus metalliredigens QYMF selenide, water dikinase YP_001320137.1 2387745 D 293826 CDS YP_001320138.1 150390089 5312393 complement(2388778..2390160) 1 NC_009633.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: hha:Hhal_0607 amino acid carrier protein; amino acid carrier protein 2390160 5312393 Amet_2322 Alkaliphilus metalliredigens QYMF amino acid carrier protein YP_001320138.1 2388778 R 293826 CDS YP_001320139.1 150390090 5312394 2390749..2392152 1 NC_009633.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 2392152 5312394 Amet_2323 Alkaliphilus metalliredigens QYMF selenocysteine synthase YP_001320139.1 2390749 D 293826 CDS YP_001320140.1 150390091 5312395 2392164..2394059 1 NC_009633.1 TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; Elongation factor SelB, winged helix 2; Elongation factor SelB, winged helix 3; KEGG: tte:TTE1871 Selenocysteine-specific translation elongation factor; selenocysteine-specific translation elongation factor 2394059 5312395 Amet_2324 Alkaliphilus metalliredigens QYMF selenocysteine-specific translation elongation factor YP_001320140.1 2392164 D 293826 CDS YP_001320141.1 150390092 5312396 2394098..2394787 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sth:STH2007 two-component response regulator; two component transcriptional regulator 2394787 5312396 Amet_2325 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001320141.1 2394098 D 293826 CDS YP_001320142.1 150390093 5312397 2394852..2396207 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE0482 sensory transduction histidine kinase; histidine kinase 2396207 5312397 Amet_2326 Alkaliphilus metalliredigens QYMF histidine kinase YP_001320142.1 2394852 D 293826 CDS YP_001320143.1 150390094 5312398 2396236..2397093 1 NC_009633.1 KEGG: cth:Cthe_2543 spore germination protein-like protein; hypothetical protein 2397093 5312398 Amet_2327 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320143.1 2396236 D 293826 CDS YP_001320144.1 150390095 5312402 2398356..2399375 1 NC_009633.1 PFAM: alpha/beta hydrolase fold; KEGG: pna:Pnap_3165 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2399375 5312402 Amet_2331 Alkaliphilus metalliredigens QYMF alpha/beta hydrolase fold protein YP_001320144.1 2398356 D 293826 CDS YP_001320145.1 150390096 5312404 2400453..2401199 1 NC_009633.1 TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; KEGG: btl:BALH_0426 tRNA pseudouridine synthase A; tRNA pseudouridine synthase A 2401199 5312404 Amet_2332 Alkaliphilus metalliredigens QYMF tRNA pseudouridine synthase A YP_001320145.1 2400453 D 293826 CDS YP_001320146.1 150390097 5312405 2401337..2401804 1 NC_009633.1 PFAM: ferric-uptake regulator; KEGG: bha:BH1396 transcriptional regulator (Fur family); ferric uptake regulator family protein 2401804 5312405 Amet_2333 Alkaliphilus metalliredigens QYMF ferric uptake regulator family protein YP_001320146.1 2401337 D 293826 CDS YP_001320147.1 150390098 5312406 complement(2401834..2402034) 1 NC_009633.1 PFAM: protein of unknown function DUF378; KEGG: cth:Cthe_2074 protein of unknown function DUF378; hypothetical protein 2402034 5312406 Amet_2334 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320147.1 2401834 R 293826 CDS YP_001320148.1 150390099 5312407 2402674..2403870 1 NC_009633.1 hypothetical protein 2403870 5312407 Amet_2335 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320148.1 2402674 D 293826 CDS YP_001320149.1 150390100 5312408 2403923..2404600 1 NC_009633.1 KEGG: tte:TTE1137 hypothetical protein; hypothetical protein 2404600 5312408 Amet_2336 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320149.1 2403923 D 293826 CDS YP_001320150.1 150390101 5312409 2404808..2405302 1 NC_009633.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2405302 ruvC 5312409 ruvC Alkaliphilus metalliredigens QYMF Holliday junction resolvase YP_001320150.1 2404808 D 293826 CDS YP_001320151.1 150390102 5312410 2405326..2405910 1 NC_009633.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2405910 ruvA 5312410 ruvA Alkaliphilus metalliredigens QYMF Holliday junction DNA helicase RuvA YP_001320151.1 2405326 D 293826 CDS YP_001320152.1 150390103 5312411 2405925..2406935 1 NC_009633.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2406935 ruvB 5312411 ruvB Alkaliphilus metalliredigens QYMF Holliday junction DNA helicase RuvB YP_001320152.1 2405925 D 293826 CDS YP_001320153.1 150390104 5312412 2407022..2408743 1 NC_009633.1 TIGRFAM: SpoIID/LytB domain protein; PFAM: Sporulation domain protein; Stage II sporulation D domain protein; KEGG: cth:Cthe_0960 SpoIID/LytB domain protein containing protein; SpoIID/LytB domain-containing protein 2408743 5312412 Amet_2340 Alkaliphilus metalliredigens QYMF SpoIID/LytB domain-containing protein YP_001320153.1 2407022 D 293826 CDS YP_001320154.1 150390105 5312413 2408751..2409776 1 NC_009633.1 TIGRFAM: S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: ctc:CTC02210 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; S-adenosylmethionine--tRNA-ribosyltransferase- isomerase 2409776 5312413 Amet_2341 Alkaliphilus metalliredigens QYMF S-adenosylmethionine--tRNA-ribosyltransferase- isomerase YP_001320154.1 2408751 D 293826 CDS YP_001320155.1 150390106 5312414 2409769..2410914 1 NC_009633.1 TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; KEGG: cth:Cthe_0958 queuine tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 2410914 5312414 Amet_2342 Alkaliphilus metalliredigens QYMF queuine tRNA-ribosyltransferase YP_001320155.1 2409769 D 293826 CDS YP_001320156.1 150390107 5312415 2411036..2411299 1 NC_009633.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: tte:TTE1184 Preprotein translocase subunit YajC; preprotein translocase subunit YajC 2411299 5312415 Amet_2343 Alkaliphilus metalliredigens QYMF preprotein translocase subunit YajC YP_001320156.1 2411036 D 293826 CDS YP_001320157.1 150390108 5312416 2411492..2411896 1 NC_009633.1 KEGG: ctc:CTC02207 hypothetical protein; hypothetical protein 2411896 5312416 Amet_2344 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320157.1 2411492 D 293826 CDS YP_001320158.1 150390109 5312417 2411970..2412110 1 NC_009633.1 KEGG: cth:Cthe_0907 hypothetical protein; hypothetical protein 2412110 5312417 Amet_2345 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320158.1 2411970 D 293826 CDS YP_001320159.1 150390110 5312418 2412219..2413595 1 NC_009633.1 PFAM: Radical SAM domain protein; KEGG: cth:Cthe_0906 radical SAM; radical SAM domain-containing protein 2413595 5312418 Amet_2346 Alkaliphilus metalliredigens QYMF radical SAM domain-containing protein YP_001320159.1 2412219 D 293826 CDS YP_001320160.1 150390111 5312419 2413576..2414088 1 NC_009633.1 KEGG: cac:CAC1048 carbonic anhydrase/acetyltransferase, isoleucine patch superfamily; carbonic anhydrase 2414088 5312419 Amet_2347 Alkaliphilus metalliredigens QYMF carbonic anhydrase YP_001320160.1 2413576 D 293826 CDS YP_001320161.1 150390112 5312420 2414194..2415456 1 NC_009633.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: tte:TTE1188 Preprotein translocase subunit SecD; protein-export membrane protein SecD 2415456 5312420 Amet_2348 Alkaliphilus metalliredigens QYMF protein-export membrane protein SecD YP_001320161.1 2414194 D 293826 CDS YP_001320162.1 150390113 5312421 2415470..2416363 1 NC_009633.1 TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: ctc:CTC02203 protein translocase subunit secF; protein-export membrane protein SecF 2416363 5312421 Amet_2349 Alkaliphilus metalliredigens QYMF protein-export membrane protein SecF YP_001320162.1 2415470 D 293826 CDS YP_001320163.1 150390114 5312422 2416437..2418110 1 NC_009633.1 PFAM: ABC-1 domain protein; KEGG: tte:TTE1190 predicted unusual protein kinase; hypothetical protein 2418110 5312422 Amet_2350 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320163.1 2416437 D 293826 CDS YP_001320164.1 150390115 5312423 2418189..2420714 1 NC_009633.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: cth:Cthe_1346 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 2420714 5312423 Amet_2351 Alkaliphilus metalliredigens QYMF single-stranded-DNA-specific exonuclease RecJ YP_001320164.1 2418189 D 293826 CDS YP_001320165.1 150390116 5312424 2420716..2421228 1 NC_009633.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 2421228 5312424 Amet_2352 Alkaliphilus metalliredigens QYMF adenine phosphoribosyltransferase YP_001320165.1 2420716 D 293826 CDS YP_001320166.1 150390117 5312425 2421290..2423473 1 NC_009633.1 KEGG: tte:TTE1195 Guanosine polyphosphate pyrophosphohydrolases/synthetases; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA 2423473 5312425 Amet_2353 Alkaliphilus metalliredigens QYMF (p)ppGpp synthetase I SpoT/RelA YP_001320166.1 2421290 D 293826 CDS YP_001320167.1 150390118 5312426 2423499..2423948 1 NC_009633.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 2423948 5312426 Amet_2354 Alkaliphilus metalliredigens QYMF D-tyrosyl-tRNA(Tyr) deacylase YP_001320167.1 2423499 D 293826 CDS YP_001320168.1 150390119 5312427 2423959..2424579 1 NC_009633.1 PFAM: beta-lactamase domain protein; KEGG: mta:Moth_1678 beta-lactamase-like; beta-lactamase domain-containing protein 2424579 5312427 Amet_2355 Alkaliphilus metalliredigens QYMF beta-lactamase domain-containing protein YP_001320168.1 2423959 D 293826 CDS YP_001320169.1 150390120 5312428 2424697..2424879 1 NC_009633.1 hypothetical protein 2424879 5312428 Amet_2356 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320169.1 2424697 D 293826 CDS YP_001320170.1 150390121 5312429 2424895..2426403 1 NC_009633.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2426403 5312429 Amet_2357 Alkaliphilus metalliredigens QYMF coproporphyrinogen III oxidase YP_001320170.1 2424895 D 293826 CDS YP_001320171.1 150390122 5312430 2426715..2427974 1 NC_009633.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 2427974 hisS 5312430 hisS Alkaliphilus metalliredigens QYMF histidyl-tRNA synthetase YP_001320171.1 2426715 D 293826 CDS YP_001320172.1 150390123 5312431 2427985..2429760 1 NC_009633.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain protein; tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: cth:Cthe_1331 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 2429760 5312431 Amet_2359 Alkaliphilus metalliredigens QYMF aspartyl-tRNA synthetase YP_001320172.1 2427985 D 293826 CDS YP_001320173.1 150390124 5312432 2429913..2430221 1 NC_009633.1 KEGG: bha:BH0515 hypothetical protein; hypothetical protein 2430221 5312432 Amet_2360 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320173.1 2429913 D 293826 CDS YP_001320174.1 150390125 5312433 2430495..2431298 1 NC_009633.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: cth:Cthe_3110 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD binding protein 2431298 5312433 Amet_2361 Alkaliphilus metalliredigens QYMF UBA/THIF-type NAD/FAD binding protein YP_001320174.1 2430495 D 293826 CDS YP_001320175.1 150390126 5312434 2431367..2431792 1 NC_009633.1 PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: cno:NT01CX_0096 positive regulator of sigma(E), RseC/MucC superfamily; sigma E positive regulator RseC/MucC 2431792 5312434 Amet_2362 Alkaliphilus metalliredigens QYMF sigma E positive regulator RseC/MucC YP_001320175.1 2431367 D 293826 CDS YP_001320176.1 150390127 5312435 complement(2431834..2432283) 1 NC_009633.1 KEGG: ctc:CTC01017 membrane spanning protein; membrane spanning protein 2432283 5312435 Amet_2363 Alkaliphilus metalliredigens QYMF membrane spanning protein YP_001320176.1 2431834 R 293826 CDS YP_001320177.1 150390128 5312436 complement(2432280..2433065) 1 NC_009633.1 PFAM: protein of unknown function DUF1212; KEGG: cac:CAC2265 hypothetical protein; hypothetical protein 2433065 5312436 Amet_2364 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320177.1 2432280 R 293826 CDS YP_001320178.1 150390129 5312437 2433264..2434496 1 NC_009633.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 2434496 glyA 5312437 glyA Alkaliphilus metalliredigens QYMF serine hydroxymethyltransferase YP_001320178.1 2433264 D 293826 CDS YP_001320179.1 150390130 5312438 2434682..2436109 1 NC_009633.1 TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: bld:BLi00421 RocR; sigma-54 dependent trancsriptional regulator 2436109 5312438 Amet_2366 Alkaliphilus metalliredigens QYMF sigma-54 dependent trancsriptional regulator YP_001320179.1 2434682 D 293826 CDS YP_001320180.1 150390131 5312439 2436412..2437458 1 NC_009633.1 PFAM: dihydrodipicolinate reductase; KEGG: tte:TTE1234 hypothetical protein; dihydrodipicolinate reductase 2437458 5312439 Amet_2367 Alkaliphilus metalliredigens QYMF dihydrodipicolinate reductase YP_001320180.1 2436412 D 293826 CDS YP_001320181.1 150390132 5312440 2437469..2437783 1 NC_009633.1 KEGG: tte:TTE1235 hypothetical protein; hypothetical protein 2437783 5312440 Amet_2368 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320181.1 2437469 D 293826 CDS YP_001320182.1 150390133 5312441 2437773..2439200 1 NC_009633.1 PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: tte:TTE1236 threonine synthase; pyridoxal-5'-phosphate-dependent protein subunit beta 2439200 5312441 Amet_2369 Alkaliphilus metalliredigens QYMF pyridoxal-5'-phosphate-dependent protein subunit beta YP_001320182.1 2437773 D 293826 CDS YP_001320183.1 150390134 5312442 2439220..2439585 1 NC_009633.1 KEGG: tte:TTE1237 hypothetical protein; hypothetical protein 2439585 5312442 Amet_2370 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320183.1 2439220 D 293826 CDS YP_001320184.1 150390135 5312443 2439585..2441795 1 NC_009633.1 PFAM: cobalamin B12-binding domain protein; D-Lysine 5,6-aminomutase alpha subunit; KEGG: tte:TTE1238 methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding); cobalamin B12-binding domain-containing protein 2441795 5312443 Amet_2371 Alkaliphilus metalliredigens QYMF cobalamin B12-binding domain-containing protein YP_001320184.1 2439585 D 293826 CDS YP_001320185.1 150390136 5312444 2441785..2443149 1 NC_009633.1 KEGG: tte:TTE1239 methylaspartate mutase; methylaspartate mutase 2443149 5312444 Amet_2372 Alkaliphilus metalliredigens QYMF methylaspartate mutase YP_001320185.1 2441785 D 293826 CDS YP_001320186.1 150390137 5312445 2443139..2444233 1 NC_009633.1 PFAM: alanine racemase domain protein; KEGG: ppr:PBPRB0280 hypothetical protein; alanine racemase domain-containing protein 2444233 5312445 Amet_2373 Alkaliphilus metalliredigens QYMF alanine racemase domain-containing protein YP_001320186.1 2443139 D 293826 CDS YP_001320187.1 150390138 5312446 2444300..2445310 1 NC_009633.1 hypothetical protein 2445310 5312446 Amet_2374 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320187.1 2444300 D 293826 CDS YP_001320188.1 150390139 5312447 complement(2445411..2445833) 1 NC_009633.1 KEGG: gga:396469 myosin, heavy chain 9, non-muscle; hypothetical protein 2445833 5312447 Amet_2375 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320188.1 2445411 R 293826 CDS YP_001320189.1 150390140 5312448 complement(2445808..2446863) 1 NC_009633.1 KEGG: tte:TTE1676 hypothetical protein; hypothetical protein 2446863 5312448 Amet_2376 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320189.1 2445808 R 293826 CDS YP_001320190.1 150390141 5312449 complement(2447091..2448680) 1 NC_009633.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: cac:CAC1956 site-specific recombinases, DNA invertase Pin homolog; resolvase domain-containing protein 2448680 5312449 Amet_2377 Alkaliphilus metalliredigens QYMF resolvase domain-containing protein YP_001320190.1 2447091 R 293826 CDS YP_001320191.1 150390142 5312450 2449333..2449704 1 NC_009633.1 hypothetical protein 2449704 5312450 Amet_2378 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320191.1 2449333 D 293826 CDS YP_001320192.1 150390143 5312451 2450045..2450680 1 NC_009633.1 KEGG: spu:578289 hypothetical LOC578289; hypothetical protein 2450680 5312451 Amet_2379 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320192.1 2450045 D 293826 CDS YP_001320193.1 150390144 5312452 2451495..2452295 1 NC_009633.1 hypothetical protein 2452295 5312452 Amet_2380 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320193.1 2451495 D 293826 CDS YP_001320194.1 150390145 5312453 2452953..2454239 1 NC_009633.1 KEGG: smu:SMU.58 hypothetical protein; hypothetical protein 2454239 5312453 Amet_2381 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320194.1 2452953 D 293826 CDS YP_001320195.1 150390146 5312454 2454773..2455861 1 NC_009633.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: cno:NT01CX_2156 ATPase AAA-like protein; ATPase central domain-containing protein 2455861 5312454 Amet_2382 Alkaliphilus metalliredigens QYMF ATPase central domain-containing protein YP_001320195.1 2454773 D 293826 CDS YP_001320196.1 150390147 5312455 2455873..2458221 1 NC_009633.1 KEGG: cno:NT01CX_2155 hypothetical protein; hypothetical protein 2458221 5312455 Amet_2383 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320196.1 2455873 D 293826 CDS YP_001320197.1 150390148 5312456 complement(2458284..2458736) 1 NC_009633.1 hypothetical protein 2458736 5312456 Amet_2384 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320197.1 2458284 R 293826 CDS YP_001320198.1 150390149 5312457 complement(2458729..2459220) 1 NC_009633.1 hypothetical protein 2459220 5312457 Amet_2385 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320198.1 2458729 R 293826 CDS YP_001320199.1 150390150 5312458 complement(2459439..2459993) 1 NC_009633.1 PFAM: protein of unknown function DUF955; hypothetical protein 2459993 5312458 Amet_2386 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320199.1 2459439 R 293826 CDS YP_001320200.1 150390151 5312459 complement(2460005..2460688) 1 NC_009633.1 hypothetical protein 2460688 5312459 Amet_2387 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320200.1 2460005 R 293826 CDS YP_001320201.1 150390152 5312460 2460779..2461072 1 NC_009633.1 hypothetical protein 2461072 5312460 Amet_2388 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320201.1 2460779 D 293826 CDS YP_001320202.1 150390153 5312461 2461108..2461374 1 NC_009633.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 2461374 5312461 Amet_2389 Alkaliphilus metalliredigens QYMF XRE family transcriptional regulator YP_001320202.1 2461108 D 293826 CDS YP_001320203.1 150390154 5312462 2461386..2461814 1 NC_009633.1 hypothetical protein 2461814 5312462 Amet_2390 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320203.1 2461386 D 293826 CDS YP_001320204.1 150390155 5312463 2461858..2462037 1 NC_009633.1 hypothetical protein 2462037 5312463 Amet_2391 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320204.1 2461858 D 293826 CDS YP_001320205.1 150390156 5312464 2462301..2462570 1 NC_009633.1 XRE family transcriptional regulator 2462570 5312464 Amet_2392 Alkaliphilus metalliredigens QYMF XRE family transcriptional regulator YP_001320205.1 2462301 D 293826 CDS YP_001320206.1 150390157 5312465 2462585..2462965 1 NC_009633.1 hypothetical protein 2462965 5312465 Amet_2393 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320206.1 2462585 D 293826 CDS YP_001320207.1 150390158 5312466 2462977..2463093 1 NC_009633.1 hypothetical protein 2463093 5312466 Amet_2394 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320207.1 2462977 D 293826 CDS YP_001320208.1 150390159 5312467 2463166..2463492 1 NC_009633.1 hypothetical protein 2463492 5312467 Amet_2395 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320208.1 2463166 D 293826 CDS YP_001320209.1 150390160 5312468 2463555..2464295 1 NC_009633.1 hypothetical protein 2464295 5312468 Amet_2396 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320209.1 2463555 D 293826 CDS YP_001320210.1 150390161 5312469 2464433..2464912 1 NC_009633.1 KEGG: bcl:ABC2854 phage replication protein; phage replication protein 2464912 5312469 Amet_2397 Alkaliphilus metalliredigens QYMF phage replication protein YP_001320210.1 2464433 D 293826 CDS YP_001320211.1 150390162 5312470 2464986..2465357 1 NC_009633.1 KEGG: ajs:Ajs_0930 hypothetical protein; hypothetical protein 2465357 5312470 Amet_2398 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320211.1 2464986 D 293826 CDS YP_001320212.1 150390163 5312471 2465347..2465517 1 NC_009633.1 hypothetical protein 2465517 5312471 Amet_2399 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320212.1 2465347 D 293826 CDS YP_001320213.1 150390164 5312472 2465638..2465931 1 NC_009633.1 hypothetical protein 2465931 5312472 Amet_2400 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320213.1 2465638 D 293826 CDS YP_001320214.1 150390165 5312473 2465951..2466172 1 NC_009633.1 hypothetical protein 2466172 5312473 Amet_2401 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320214.1 2465951 D 293826 CDS YP_001320215.1 150390166 5312474 2466184..2466375 1 NC_009633.1 hypothetical protein 2466375 5312474 Amet_2402 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320215.1 2466184 D 293826 CDS YP_001320216.1 150390167 5312475 complement(2466451..2466927) 1 NC_009633.1 hypothetical protein 2466927 5312475 Amet_2403 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320216.1 2466451 R 293826 CDS YP_001320217.1 150390168 5312476 complement(2467042..2467227) 1 NC_009633.1 PFAM: small acid-soluble spore protein, alpha/beta type; alpha/beta type small acid-soluble spore protein 2467227 5312476 Amet_2404 Alkaliphilus metalliredigens QYMF alpha/beta type small acid-soluble spore protein YP_001320217.1 2467042 R 293826 CDS YP_001320218.1 150390169 5312477 2467763..2468236 1 NC_009633.1 KEGG: cac:CAC0550 possible sigma factor; putative sigma factor 2468236 5312477 Amet_2405 Alkaliphilus metalliredigens QYMF putative sigma factor YP_001320218.1 2467763 D 293826 CDS YP_001320219.1 150390170 5312478 2468752..2469198 1 NC_009633.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: dsy:DSY1553 hypothetical protein; peptidoglycan binding domain-containing protein 2469198 5312478 Amet_2406 Alkaliphilus metalliredigens QYMF peptidoglycan binding domain-containing protein YP_001320219.1 2468752 D 293826 CDS YP_001320220.1 150390171 5312479 2469286..2469894 1 NC_009633.1 PFAM: phage integrase family protein; KEGG: bat:BAS3811 prophage LambdaBa02, site-specific recombinase, phage integrase family; phage integrase family protein 2469894 5312479 Amet_2407 Alkaliphilus metalliredigens QYMF phage integrase family protein YP_001320220.1 2469286 D 293826 CDS YP_001320221.1 150390172 5312480 2470253..2470903 1 NC_009633.1 KEGG: bld:BLi01463 YqaS; YqaS 2470903 5312480 Amet_2408 Alkaliphilus metalliredigens QYMF YqaS YP_001320221.1 2470253 D 293826 CDS YP_001320222.1 150390173 5312481 2470905..2471585 1 NC_009633.1 KEGG: bat:BAS0440 prophage LambdaBa04, GP54; hypothetical protein 2471585 5312481 Amet_2409 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320222.1 2470905 D 293826 CDS YP_001320223.1 150390174 5312482 2471689..2472015 1 NC_009633.1 KEGG: bat:BAS0442 hypothetical protein; hypothetical protein 2472015 5312482 Amet_2410 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320223.1 2471689 D 293826 CDS YP_001320224.1 150390175 5312483 2472024..2473757 1 NC_009633.1 PFAM: phage Terminase; KEGG: bat:BAS0443 prophage LambdaBa04, terminase, large subunit, putative; phage terminase 2473757 5312483 Amet_2411 Alkaliphilus metalliredigens QYMF phage terminase YP_001320224.1 2472024 D 293826 CDS YP_001320225.1 150390176 5312484 2473940..2475181 1 NC_009633.1 PFAM: phage portal protein; KEGG: bcz:BCZK3426 phage-related, head portal protein; phage portal protein 2475181 5312484 Amet_2412 Alkaliphilus metalliredigens QYMF phage portal protein YP_001320225.1 2473940 D 293826 CDS YP_001320226.1 150390177 5312485 2475174..2475824 1 NC_009633.1 TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35, phage prohead HK97; KEGG: lla:L55698 prophage pi2 protein 32; HK97 family phage prohead protease 2475824 5312485 Amet_2413 Alkaliphilus metalliredigens QYMF HK97 family phage prohead protease YP_001320226.1 2475174 D 293826 CDS YP_001320227.1 150390178 5312486 2475835..2477124 1 NC_009633.1 KEGG: bcz:BCZK3424 group-specific protein; possible phage major capsid protein; putative major capsid protein 2477124 5312486 Amet_2414 Alkaliphilus metalliredigens QYMF putative major capsid protein YP_001320227.1 2475835 D 293826 CDS YP_001320228.1 150390179 5312487 2477187..2477369 1 NC_009633.1 hypothetical protein 2477369 5312487 Amet_2415 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320228.1 2477187 D 293826 CDS YP_001320229.1 150390180 5312488 2477369..2477650 1 NC_009633.1 TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: cpr:CPR_C0011 uncharacterized phage protein (possible DNA packaging); phage protein 2477650 5312488 Amet_2416 Alkaliphilus metalliredigens QYMF phage protein YP_001320229.1 2477369 D 293826 CDS YP_001320230.1 150390181 5312489 2477647..2477976 1 NC_009633.1 TIGRFAM: phage head-tail adaptor, putative; phage head-tail adaptor 2477976 5312489 Amet_2417 Alkaliphilus metalliredigens QYMF phage head-tail adaptor YP_001320230.1 2477647 D 293826 CDS YP_001320231.1 150390182 5312490 2477976..2478407 1 NC_009633.1 KEGG: ctc:CTC02127 hypothetical protein; hypothetical protein 2478407 5312490 Amet_2418 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320231.1 2477976 D 293826 CDS YP_001320232.1 150390183 5312491 2478412..2478831 1 NC_009633.1 hypothetical protein 2478831 5312491 Amet_2419 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320232.1 2478412 D 293826 CDS YP_001320233.1 150390184 5312492 2478838..2479893 1 NC_009633.1 KEGG: ctc:CTC02125 phage-like element pbsx protein XkdK; phage-like element pbsx protein XkdK 2479893 5312492 Amet_2420 Alkaliphilus metalliredigens QYMF phage-like element pbsx protein XkdK YP_001320233.1 2478838 D 293826 CDS YP_001320234.1 150390185 5312493 2479909..2480352 1 NC_009633.1 KEGG: ctc:CTC02124 phage-like element pbsx protein XkdM; phage-like element pbsx protein XkdM 2480352 5312493 Amet_2421 Alkaliphilus metalliredigens QYMF phage-like element pbsx protein XkdM YP_001320234.1 2479909 D 293826 CDS YP_001320235.1 150390186 5312494 2480355..2480762 1 NC_009633.1 hypothetical protein 2480762 5312494 Amet_2422 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320235.1 2480355 D 293826 CDS YP_001320236.1 150390187 5312495 2480949..2481446 1 NC_009633.1 hypothetical protein 2481446 5312495 Amet_2423 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320236.1 2480949 D 293826 CDS YP_001320237.1 150390188 5312496 2481542..2482465 1 NC_009633.1 KEGG: sha:SH1757 hypothetical protein; hypothetical protein 2482465 5312496 Amet_2424 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320237.1 2481542 D 293826 CDS YP_001320238.1 150390189 5312497 2482693..2484132 1 NC_009633.1 KEGG: cpf:CPF_0965 hypothetical protein; hypothetical protein 2484132 5312497 Amet_2425 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320238.1 2482693 D 293826 CDS YP_001320239.1 150390190 5312498 2484143..2484559 1 NC_009633.1 KEGG: dsy:DSY3953 hypothetical protein; hypothetical protein 2484559 5312498 Amet_2426 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320239.1 2484143 D 293826 CDS YP_001320240.1 150390191 5312499 2484561..2485547 1 NC_009633.1 KEGG: ctc:CTC02117 phage-like element pbsx protein XkdQ; hypothetical protein 2485547 5312499 Amet_2427 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320240.1 2484561 D 293826 CDS YP_001320241.1 150390192 5312500 2485548..2485937 1 NC_009633.1 hypothetical protein 2485937 5312500 Amet_2428 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320241.1 2485548 D 293826 CDS YP_001320242.1 150390193 5312501 2485937..2486377 1 NC_009633.1 KEGG: ctc:CTC02116 phage-like element pbsx protein XkdS; hypothetical protein 2486377 5312501 Amet_2429 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320242.1 2485937 D 293826 CDS YP_001320243.1 150390194 5312502 2486370..2487437 1 NC_009633.1 PFAM: Baseplate J family protein; KEGG: ctc:CTC02115 phage-like element pbsx protein XkdT; baseplate J family protein 2487437 5312502 Amet_2430 Alkaliphilus metalliredigens QYMF baseplate J family protein YP_001320243.1 2486370 D 293826 CDS YP_001320244.1 150390195 5312503 2487430..2487963 1 NC_009633.1 KEGG: ctc:CTC02112 phage-like element pbsx protein XkdT; phage-like element pbsx protein XkdT 2487963 5312503 Amet_2431 Alkaliphilus metalliredigens QYMF phage-like element pbsx protein XkdT YP_001320244.1 2487430 D 293826 CDS YP_001320245.1 150390196 5312504 2487963..2488235 1 NC_009633.1 hypothetical protein 2488235 5312504 Amet_2432 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320245.1 2487963 D 293826 CDS YP_001320246.1 150390197 5312505 2488235..2488864 1 NC_009633.1 hypothetical protein 2488864 5312505 Amet_2433 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320246.1 2488235 D 293826 CDS YP_001320247.1 150390198 5312506 2488877..2489272 1 NC_009633.1 hypothetical protein 2489272 5312506 Amet_2434 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320247.1 2488877 D 293826 CDS YP_001320248.1 150390199 5312507 2489265..2489444 1 NC_009633.1 hypothetical protein 2489444 5312507 Amet_2435 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320248.1 2489265 D 293826 CDS YP_001320249.1 150390200 5312508 2489451..2489582 1 NC_009633.1 hypothetical protein 2489582 5312508 Amet_2436 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320249.1 2489451 D 293826 CDS YP_001320250.1 150390201 5312509 2489629..2490072 1 NC_009633.1 TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin, toxin secretion/phage lysis; KEGG: bat:BAS3785 prophage LambdaBa02, holin, putative; toxin secretion/phage lysis holin 2490072 5312509 Amet_2437 Alkaliphilus metalliredigens QYMF toxin secretion/phage lysis holin YP_001320250.1 2489629 D 293826 CDS YP_001320251.1 150390202 5312510 2490069..2490791 1 NC_009633.1 PFAM: cell wall hydrolase/autolysin; KEGG: bcl:ABC2815 N-acetylmuramoyl-L-alanine amidase; cell wall hydrolase/autolysin 2490791 5312510 Amet_2438 Alkaliphilus metalliredigens QYMF cell wall hydrolase/autolysin YP_001320251.1 2490069 D 293826 CDS YP_001320252.1 150390203 5312511 2490968..2491216 1 NC_009633.1 hypothetical protein 2491216 5312511 Amet_2439 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320252.1 2490968 D 293826 CDS YP_001320253.1 150390204 5312512 2491284..2492045 1 NC_009633.1 TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: cpr:CPR_C0051 modification methylase dpniia, putative; DNA adenine methylase 2492045 5312512 Amet_2440 Alkaliphilus metalliredigens QYMF DNA adenine methylase YP_001320253.1 2491284 D 293826 CDS YP_001320254.1 150390205 5312513 2492185..2492817 1 NC_009633.1 KEGG: bce:BC1265 hypothetical cytosolic protein; hypothetical protein 2492817 5312513 Amet_2441 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320254.1 2492185 D 293826 CDS YP_001320255.1 150390206 5312514 2493150..2493923 1 NC_009633.1 hypothetical protein 2493923 5312514 Amet_2442 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320255.1 2493150 D 293826 CDS YP_001320256.1 150390207 5312515 complement(2494005..2494361) 1 NC_009633.1 KEGG: ctc:CTC01365 membrane spanning protein; membrane spanning protein 2494361 5312515 Amet_2443 Alkaliphilus metalliredigens QYMF membrane spanning protein YP_001320256.1 2494005 R 293826 CDS YP_001320257.1 150390208 5312516 complement(2494459..2494632) 1 NC_009633.1 hypothetical protein 2494632 5312516 Amet_2444 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320257.1 2494459 R 293826 CDS YP_001320258.1 150390209 5312517 2494936..2495982 1 NC_009633.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tte:TTE0267 Threonine aldolase; threonine aldolase 2495982 5312517 Amet_2445 Alkaliphilus metalliredigens QYMF threonine aldolase YP_001320258.1 2494936 D 293826 CDS YP_001320259.1 150390210 5312518 2496009..2497277 1 NC_009633.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: ctc:CTC01048 ATPase associated with chromosome architecture/replication; recombination factor protein RarA 2497277 5312518 Amet_2446 Alkaliphilus metalliredigens QYMF recombination factor protein RarA YP_001320259.1 2496009 D 293826 CDS YP_001320260.1 150390211 5312519 2497405..2497725 1 NC_009633.1 hypothetical protein 2497725 5312519 Amet_2447 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320260.1 2497405 D 293826 CDS YP_001320261.1 150390212 5312520 complement(2497718..2499328) 1 NC_009633.1 KEGG: tte:TTE1676 hypothetical protein; hypothetical protein 2499328 5312520 Amet_2448 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320261.1 2497718 R 293826 CDS YP_001320262.1 150390213 5312521 2499536..2500198 1 NC_009633.1 KEGG: dsy:DSY4494 hypothetical protein; hypothetical protein 2500198 5312521 Amet_2449 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320262.1 2499536 D 293826 CDS YP_001320263.1 150390214 5312522 complement(2500297..2501097) 1 NC_009633.1 PFAM: SCP-like extracellular protein; KEGG: bcl:ABC2540 hypothetical protein; SCP-like extracellular protein 2501097 5312522 Amet_2450 Alkaliphilus metalliredigens QYMF SCP-like extracellular protein YP_001320263.1 2500297 R 293826 CDS YP_001320264.1 150390215 5312523 2501432..2502268 1 NC_009633.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: afu:AF0323a dTDP-4-dehydrorhamnose reductas; dTDP-4-dehydrorhamnose reductase 2502268 5312523 Amet_2451 Alkaliphilus metalliredigens QYMF dTDP-4-dehydrorhamnose reductase YP_001320264.1 2501432 D 293826 CDS YP_001320265.1 150390216 5312524 2502432..2502881 1 NC_009633.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: tte:TTE1242 predicted transcriptional regulator; BadM/Rrf2 family transcriptional regulator 2502881 5312524 Amet_2452 Alkaliphilus metalliredigens QYMF BadM/Rrf2 family transcriptional regulator YP_001320265.1 2502432 D 293826 CDS YP_001320266.1 150390217 5312525 2502922..2504109 1 NC_009633.1 PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cpr:CPR_1755 cysteine desulfurase; class V aminotransferase 2504109 5312525 Amet_2453 Alkaliphilus metalliredigens QYMF class V aminotransferase YP_001320266.1 2502922 D 293826 CDS YP_001320267.1 150390218 5312526 2504102..2504542 1 NC_009633.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: cth:Cthe_0721 nitrogen-fixing NifU-like protein; NifU domain-containing protein 2504542 5312526 Amet_2454 Alkaliphilus metalliredigens QYMF NifU domain-containing protein YP_001320267.1 2504102 D 293826 CDS YP_001320268.1 150390219 5312527 2504656..2505204 1 NC_009633.1 KEGG: cth:Cthe_3197 PRC-barrel domain protein; hypothetical protein 2505204 5312527 Amet_2455 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320268.1 2504656 D 293826 CDS YP_001320269.1 150390220 5312528 2505233..2505412 1 NC_009633.1 hypothetical protein 2505412 5312528 Amet_2456 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320269.1 2505233 D 293826 CDS YP_001320270.1 150390221 5312529 2505523..2506758 1 NC_009633.1 PFAM: protein of unknown function UPF0118; KEGG: cth:Cthe_3199 protein of unknown function UPF0118; hypothetical protein 2506758 5312529 Amet_2457 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320270.1 2505523 D 293826 CDS YP_001320271.1 150390222 5312530 2507054..2509735 1 NC_009633.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2509735 alaS 5312530 alaS Alkaliphilus metalliredigens QYMF alanyl-tRNA synthetase YP_001320271.1 2507054 D 293826 CDS YP_001320272.1 150390223 5312531 2509850..2510107 1 NC_009633.1 PFAM: protein of unknown function DUF965; KEGG: chy:CHY_0540 hypothetical protein; hypothetical protein 2510107 5312531 Amet_2459 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320272.1 2509850 D 293826 CDS YP_001320273.1 150390224 5312532 2510120..2512297 1 NC_009633.1 KEGG: tte:TTE0101 hypothetical protein; hypothetical protein 2512297 5312532 Amet_2460 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320273.1 2510120 D 293826 CDS YP_001320274.1 150390225 5312533 2512341..2513291 1 NC_009633.1 PFAM: aldo/keto reductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cth:Cthe_0152 aldo/keto reductase; aldo/keto reductase 2513291 5312533 Amet_2461 Alkaliphilus metalliredigens QYMF aldo/keto reductase YP_001320274.1 2512341 D 293826 CDS YP_001320275.1 150390226 5312534 2513302..2513718 1 NC_009633.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase, RNase H domain protein fold; KEGG: ctc:CTC01056 putative Holliday junction resolvase; Holliday junction resolvase YqgF 2513718 5312534 Amet_2462 Alkaliphilus metalliredigens QYMF Holliday junction resolvase YqgF YP_001320275.1 2513302 D 293826 CDS YP_001320276.1 150390227 5312535 2513837..2514103 1 NC_009633.1 PFAM: protein of unknown function DUF1292; KEGG: cno:NT01CX_2277 hypothetical protein; hypothetical protein 2514103 5312535 Amet_2463 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320276.1 2513837 D 293826 CDS YP_001320277.1 150390228 5312536 complement(2514120..2514572) 1 NC_009633.1 hypothetical protein 2514572 5312536 Amet_2464 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320277.1 2514120 R 293826 CDS YP_001320278.1 150390229 5312537 2514670..2515368 1 NC_009633.1 PFAM: sugar fermentation stimulation protein; KEGG: ctc:CTC00070 sugar fermentation stimulation protein; sugar fermentation stimulation protein 2515368 5312537 Amet_2465 Alkaliphilus metalliredigens QYMF sugar fermentation stimulation protein YP_001320278.1 2514670 D 293826 CDS YP_001320279.1 150390230 5312538 2515471..2515905 1 NC_009633.1 PFAM: ferric-uptake regulator; KEGG: cpf:CPF_2029 transcriptional regulator, Fur family; ferric uptake regulator family protein 2515905 5312538 Amet_2466 Alkaliphilus metalliredigens QYMF ferric uptake regulator family protein YP_001320279.1 2515471 D 293826 CDS YP_001320280.1 150390231 5312539 2516137..2517801 1 NC_009633.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: tte:TTE1253 predicted hydrolase of the metallo-beta-lactamase superfamily; beta-lactamase domain-containing protein 2517801 5312539 Amet_2467 Alkaliphilus metalliredigens QYMF beta-lactamase domain-containing protein YP_001320280.1 2516137 D 293826 CDS YP_001320281.1 150390232 5312540 2517897..2518202 1 NC_009633.1 KEGG: dsy:DSY3973 hypothetical protein; hypothetical protein 2518202 5312540 Amet_2468 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320281.1 2517897 D 293826 CDS YP_001320282.1 150390233 5312541 2518192..2518785 1 NC_009633.1 PFAM: protein of unknown function DUF340, membrane; KEGG: fnu:FN1083 putative surface protein; hypothetical protein 2518785 5312541 Amet_2469 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320282.1 2518192 D 293826 CDS YP_001320283.1 150390234 5312542 2519026..2519673 1 NC_009633.1 PFAM: O-methyltransferase, family 3; Methyltransferase type 11; KEGG: cth:Cthe_1009 O-methyltransferase, family 3; O-methyltransferase family protein 2519673 5312542 Amet_2470 Alkaliphilus metalliredigens QYMF O-methyltransferase family protein YP_001320283.1 2519026 D 293826 CDS YP_001320284.1 150390235 5312543 2519688..2520929 1 NC_009633.1 PFAM: peptidase U32; KEGG: cth:Cthe_1010 peptidase U32; peptidase U32 2520929 5312543 Amet_2471 Alkaliphilus metalliredigens QYMF peptidase U32 YP_001320284.1 2519688 D 293826 CDS YP_001320285.1 150390236 5312544 2520922..2521548 1 NC_009633.1 TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; KEGG: cno:NT01CX_2269 uridine kinase; uridine kinase 2521548 5312544 Amet_2472 Alkaliphilus metalliredigens QYMF uridine kinase YP_001320285.1 2520922 D 293826 CDS YP_001320286.1 150390237 5312545 2521621..2523306 1 NC_009633.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: cth:Cthe_1011 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 2523306 5312545 Amet_2473 Alkaliphilus metalliredigens QYMF peptidoglycan glycosyltransferase YP_001320286.1 2521621 D 293826 CDS YP_001320287.1 150390238 5312546 2523438..2523887 1 NC_009633.1 PFAM: sigma-70 region 2 domain protein; KEGG: cth:Cthe_1012 RNA polymerase, sigma 28 subunit; FliA/WhiG family RNA polymerase sigma factor 2523887 5312546 Amet_2474 Alkaliphilus metalliredigens QYMF FliA/WhiG family RNA polymerase sigma factor YP_001320287.1 2523438 D 293826 CDS YP_001320288.1 150390239 5312547 complement(2523797..2525383) 1 NC_009633.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: cac:CAC1956 site-specific recombinases, DNA invertase Pin homolog; resolvase domain-containing protein 2525383 5312547 Amet_2475 Alkaliphilus metalliredigens QYMF resolvase domain-containing protein YP_001320288.1 2523797 R 293826 CDS YP_001320289.1 150390240 5312548 2525428..2525772 1 NC_009633.1 hypothetical protein 2525772 5312548 Amet_2476 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320289.1 2525428 D 293826 CDS YP_001320290.1 150390241 5312549 2526047..2526295 1 NC_009633.1 hypothetical protein 2526295 5312549 Amet_2477 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320290.1 2526047 D 293826 CDS YP_001320291.1 150390242 5312550 complement(2526383..2526595) 1 NC_009633.1 KEGG: dsy:DSY3278 hypothetical protein; hypothetical protein 2526595 5312550 Amet_2478 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320291.1 2526383 R 293826 CDS YP_001320292.1 150390243 5312552 2527436..2527789 1 NC_009633.1 PFAM: sigma-70 region 4 domain protein; KEGG: cth:Cthe_1012 RNA polymerase, sigma 28 subunit; FliA/WhiG family RNA polymerase sigma 28 subunit 2527789 5312552 Amet_2480 Alkaliphilus metalliredigens QYMF FliA/WhiG family RNA polymerase sigma 28 subunit YP_001320292.1 2527436 D 293826 CDS YP_001320293.1 150390244 5312553 2528152..2528589 1 NC_009633.1 KEGG: tte:TTE0491 flagellar protein; hypothetical protein 2528589 5312553 Amet_2481 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320293.1 2528152 D 293826 CDS YP_001320294.1 150390245 5312554 2528698..2529201 1 NC_009633.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; KEGG: tte:TTE1260 predicted hydrolase of the HAD superfamily; HAD family phosphatase 2529201 5312554 Amet_2482 Alkaliphilus metalliredigens QYMF HAD family phosphatase YP_001320294.1 2528698 D 293826 CDS YP_001320295.1 150390246 5312555 2529740..2530174 1 NC_009633.1 KEGG: noc:Noc_2892 general secretion pathway protein H; hypothetical protein 2530174 5312555 Amet_2483 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320295.1 2529740 D 293826 CDS YP_001320296.1 150390247 5312556 2530191..2530574 1 NC_009633.1 hypothetical protein 2530574 5312556 Amet_2484 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320296.1 2530191 D 293826 CDS YP_001320297.1 150390248 5312557 2530634..2531161 1 NC_009633.1 hypothetical protein 2531161 5312557 Amet_2485 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320297.1 2530634 D 293826 CDS YP_001320298.1 150390249 5312558 2531158..2531781 1 NC_009633.1 hypothetical protein 2531781 5312558 Amet_2486 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320298.1 2531158 D 293826 CDS YP_001320299.1 150390250 5312559 2531862..2532128 1 NC_009633.1 KEGG: tte:TTE1271 hypothetical protein; hypothetical protein 2532128 5312559 Amet_2487 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320299.1 2531862 D 293826 CDS YP_001320300.1 150390251 5312560 2532339..2532524 1 NC_009633.1 hypothetical protein 2532524 5312560 Amet_2488 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320300.1 2532339 D 293826 CDS YP_001320301.1 150390252 5312561 2532552..2533619 1 NC_009633.1 PFAM: creatinase; peptidase M24; KEGG: tte:TTE1280 Xaa-Pro aminopeptidase; peptidase M24 2533619 5312561 Amet_2489 Alkaliphilus metalliredigens QYMF peptidase M24 YP_001320301.1 2532552 D 293826 CDS YP_001320302.1 150390253 5312562 2533655..2534212 1 NC_009633.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2534212 5312562 Amet_2490 Alkaliphilus metalliredigens QYMF elongation factor P YP_001320302.1 2533655 D 293826 CDS YP_001320303.1 150390254 5312563 2534269..2534691 1 NC_009633.1 KEGG: tte:TTE1282 hypothetical protein; hypothetical protein 2534691 5312563 Amet_2491 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320303.1 2534269 D 293826 CDS YP_001320304.1 150390255 5312564 2534809..2535849 1 NC_009633.1 TIGRFAM: Sporulation stage III, protein AA; SMART: AAA ATPase; KEGG: cth:Cthe_0845 stage III sporulation protein spoIIIAA; sporulation stage III, protein AA 2535849 5312564 Amet_2492 Alkaliphilus metalliredigens QYMF sporulation stage III, protein AA YP_001320304.1 2534809 D 293826 CDS YP_001320305.1 150390256 5312565 2535850..2536371 1 NC_009633.1 TIGRFAM: Sporulation stage III, protein AB; KEGG: cth:Cthe_0844 stage III sporulation protein spoIIIAB; sporulation stage III, protein AB 2536371 5312565 Amet_2493 Alkaliphilus metalliredigens QYMF sporulation stage III, protein AB YP_001320305.1 2535850 D 293826 CDS YP_001320306.1 150390257 5312566 2536406..2536609 1 NC_009633.1 PFAM: Stage III sporulation AC family protein; KEGG: tte:TTE1285 hypothetical protein; stage III sporulation AC family protein 2536609 5312566 Amet_2494 Alkaliphilus metalliredigens QYMF stage III sporulation AC family protein YP_001320306.1 2536406 D 293826 CDS YP_001320307.1 150390258 5312567 2536622..2537008 1 NC_009633.1 TIGRFAM: Sporulation stage III, protein AD; KEGG: cth:Cthe_0842 stage III sporulation protein AD; sporulation stage III, protein AD 2537008 5312567 Amet_2495 Alkaliphilus metalliredigens QYMF sporulation stage III, protein AD YP_001320307.1 2536622 D 293826 CDS YP_001320308.1 150390259 5312568 2537060..2538193 1 NC_009633.1 TIGRFAM: Sporulation stage III, protein AE; KEGG: bha:BH2793 mutants block sporulation after engulfment; sporulation stage III, protein AE 2538193 5312568 Amet_2496 Alkaliphilus metalliredigens QYMF sporulation stage III, protein AE YP_001320308.1 2537060 D 293826 CDS YP_001320309.1 150390260 5312569 2538202..2538825 1 NC_009633.1 TIGRFAM: Sporulation stage III, protein AF; KEGG: ctc:CTC01585 stage III sporulation protein AF; sporulation stage III, protein AF 2538825 5312569 Amet_2497 Alkaliphilus metalliredigens QYMF sporulation stage III, protein AF YP_001320309.1 2538202 D 293826 CDS YP_001320310.1 150390261 5312570 2538846..2539436 1 NC_009633.1 TIGRFAM: Sporulation stage III, protein AG; KEGG: tte:TTE1289 stage III sporulation protein AG; sporulation stage III, protein AG 2539436 5312570 Amet_2498 Alkaliphilus metalliredigens QYMF sporulation stage III, protein AG YP_001320310.1 2538846 D 293826 CDS YP_001320311.1 150390262 5312571 2539462..2540226 1 NC_009633.1 KEGG: tte:TTE1290 stage III sporulation protein AH; hypothetical protein 2540226 5312571 Amet_2499 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320311.1 2539462 D 293826 CDS YP_001320312.1 150390263 5312572 2540294..2540686 1 NC_009633.1 PFAM: protein of unknown function DUF322; KEGG: cth:Cthe_0837 protein of unknown function DUF322; hypothetical protein 2540686 5312572 Amet_2500 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320312.1 2540294 D 293826 CDS YP_001320313.1 150390264 5312573 2540904..2541293 1 NC_009633.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: cth:Cthe_0834 NusB antitermination factor; NusB antitermination factor 2541293 5312573 Amet_2501 Alkaliphilus metalliredigens QYMF NusB antitermination factor YP_001320313.1 2540904 D 293826 CDS YP_001320314.1 150390265 5312574 2541283..2542275 1 NC_009633.1 PFAM: peptidase M22, glycoprotease; KEGG: sth:STH1848 O-sialoglycoprotein endopeptidase; O-sialoglycoprotein endopeptidase 2542275 5312574 Amet_2502 Alkaliphilus metalliredigens QYMF O-sialoglycoprotein endopeptidase YP_001320314.1 2541283 D 293826 CDS YP_001320315.1 150390266 5312575 2542328..2543560 1 NC_009633.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2543560 xseA 5312575 xseA Alkaliphilus metalliredigens QYMF exodeoxyribonuclease VII large subunit YP_001320315.1 2542328 D 293826 CDS YP_001320316.1 150390267 5312576 2543541..2543768 1 NC_009633.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: aba:Acid345_3427 exodeoxyribonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 2543768 5312576 Amet_2504 Alkaliphilus metalliredigens QYMF exodeoxyribonuclease VII small subunit YP_001320316.1 2543541 D 293826 CDS YP_001320317.1 150390268 5312577 2543771..2544658 1 NC_009633.1 PFAM: Polyprenyl synthetase; KEGG: cth:Cthe_0831 polyprenyl synthetase; polyprenyl synthetase 2544658 5312577 Amet_2505 Alkaliphilus metalliredigens QYMF polyprenyl synthetase YP_001320317.1 2543771 D 293826 CDS YP_001320318.1 150390269 5312578 2544674..2545123 1 NC_009633.1 PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: cth:Cthe_0830 acid phosphatase/vanadium-dependent haloperoxidase related; acid phosphatase/vanadium-dependent haloperoxidase-like protein 2545123 5312578 Amet_2506 Alkaliphilus metalliredigens QYMF acid phosphatase/vanadium-dependent haloperoxidase-like protein YP_001320318.1 2544674 D 293826 CDS YP_001320319.1 150390270 5312579 2545944..2546492 1 NC_009633.1 KEGG: cth:Cthe_0829 hypothetical protein; hypothetical protein 2546492 5312579 Amet_2507 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320319.1 2545944 D 293826 CDS YP_001320320.1 150390271 5312580 2546489..2548399 1 NC_009633.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, central region; Transketolase domain protein; KEGG: tte:TTE1298 deoxyxylulose-5-phosphate synthase; deoxyxylulose-5-phosphate synthase 2548399 5312580 Amet_2508 Alkaliphilus metalliredigens QYMF deoxyxylulose-5-phosphate synthase YP_001320320.1 2546489 D 293826 CDS YP_001320321.1 150390272 5312581 2548414..2549217 1 NC_009633.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: cth:Cthe_0827 hemolysin A; hemolysin A 2549217 5312581 Amet_2509 Alkaliphilus metalliredigens QYMF hemolysin A YP_001320321.1 2548414 D 293826 CDS YP_001320322.1 150390273 5312582 2549366..2549815 1 NC_009633.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 2549815 argR 5312582 argR Alkaliphilus metalliredigens QYMF arginine repressor YP_001320322.1 2549366 D 293826 CDS YP_001320323.1 150390274 5312583 2549830..2551539 1 NC_009633.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: cth:Cthe_0814 DNA repair protein RecN; DNA repair protein RecN 2551539 5312583 Amet_2511 Alkaliphilus metalliredigens QYMF DNA repair protein RecN YP_001320323.1 2549830 D 293826 CDS YP_001320324.1 150390275 5312584 2551730..2553010 1 NC_009633.1 TIGRFAM: Peptidase S55, sporulation stage IV, protein B; PFAM: peptidase S55, SpoIVB; KEGG: tte:TTE1303 sporulation protein IVB; peptidase S55, sporulation stage IV, protein B 2553010 5312584 Amet_2512 Alkaliphilus metalliredigens QYMF peptidase S55, sporulation stage IV, protein B YP_001320324.1 2551730 D 293826 CDS YP_001320325.1 150390276 5312585 2553161..2553958 1 NC_009633.1 TIGRFAM: Sporulation response regulator, Spo0A; PFAM: response regulator receiver; Sporulation initiation factor Spo0A-like; KEGG: ctc:CTC01569 stage 0 sporulation protein A; response regulator receiver protein 2553958 5312585 Amet_2513 Alkaliphilus metalliredigens QYMF response regulator receiver protein YP_001320325.1 2553161 D 293826 CDS YP_001320326.1 150390277 5312586 2554105..2554683 1 NC_009633.1 PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: cth:Cthe_0507 exonuclease, RNase T and DNA polymerase III; exonuclease 2554683 5312586 Amet_2514 Alkaliphilus metalliredigens QYMF exonuclease YP_001320326.1 2554105 D 293826 CDS YP_001320327.1 150390278 5312587 complement(2554789..2555613) 1 NC_009633.1 PFAM: regulatory protein RecX; KEGG: bld:BLi00877 similar to proteins; RBL02217; regulatory protein RecX 2555613 5312587 Amet_2515 Alkaliphilus metalliredigens QYMF regulatory protein RecX YP_001320327.1 2554789 R 293826 CDS YP_001320328.1 150390279 5312588 2555858..2556979 1 NC_009633.1 PFAM: Thiamin pyrophosphokinase, catalytic region; KEGG: tte:TTE1305 hypothetical protein; thiamin pyrophosphokinase, catalytic region 2556979 5312588 Amet_2516 Alkaliphilus metalliredigens QYMF thiamin pyrophosphokinase, catalytic region YP_001320328.1 2555858 D 293826 CDS YP_001320329.1 150390280 5312589 2556995..2557891 1 NC_009633.1 KEGG: tte:TTE1306 hypothetical protein; hypothetical protein 2557891 5312589 Amet_2517 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320329.1 2556995 D 293826 CDS YP_001320330.1 150390281 5312590 2557903..2558595 1 NC_009633.1 PFAM: glycosyl transferase, family 2; KEGG: tte:TTE1307 glycosyltransferase involved in cell wall biogenesis; glycosyl transferase family protein 2558595 5312590 Amet_2518 Alkaliphilus metalliredigens QYMF glycosyl transferase family protein YP_001320330.1 2557903 D 293826 CDS YP_001320331.1 150390282 5312591 2558600..2559436 1 NC_009633.1 KEGG: tte:TTE1308 hypothetical protein; hypothetical protein 2559436 5312591 Amet_2519 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320331.1 2558600 D 293826 CDS YP_001320332.1 150390283 5312592 2559528..2560628 1 NC_009633.1 KEGG: swo:Swol_0596 hypothetical protein; hypothetical protein 2560628 5312592 Amet_2520 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320332.1 2559528 D 293826 CDS YP_001320333.1 150390284 5312593 2560778..2561326 1 NC_009633.1 PFAM: NUDIX hydrolase; KEGG: tte:TTE1310 NTP pyrophosphohydrolases including oxidative damage repair enzymes; NUDIX hydrolase 2561326 5312593 Amet_2521 Alkaliphilus metalliredigens QYMF NUDIX hydrolase YP_001320333.1 2560778 D 293826 CDS YP_001320334.1 150390285 5312594 2561398..2562033 1 NC_009633.1 TIGRFAM: Sporulation stage II, protein M; PFAM: protein of unknown function DUF95, transmembrane; KEGG: tte:TTE1312 hypothetical protein; sporulation stage II, protein M 2562033 5312594 Amet_2522 Alkaliphilus metalliredigens QYMF sporulation stage II, protein M YP_001320334.1 2561398 D 293826 CDS YP_001320335.1 150390286 5312595 2562174..2563058 1 NC_009633.1 TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: cth:Cthe_0676 tyrosine recombinase XerD; tyrosine recombinase XerD 2563058 5312595 Amet_2523 Alkaliphilus metalliredigens QYMF tyrosine recombinase XerD YP_001320335.1 2562174 D 293826 CDS YP_001320336.1 150390287 5312596 2563160..2564332 1 NC_009633.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 2564332 5312596 Amet_2524 Alkaliphilus metalliredigens QYMF phosphopentomutase YP_001320336.1 2563160 D 293826 CDS YP_001320337.1 150390288 5312597 2564379..2565200 1 NC_009633.1 TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine phosphorylase, family 2; KEGG: oih:OB1845 purine nucleoside phosphorylase; inosine guanosine and xanthosine phosphorylase family protein 2565200 5312597 Amet_2525 Alkaliphilus metalliredigens QYMF inosine guanosine and xanthosine phosphorylase family protein YP_001320337.1 2564379 D 293826 CDS YP_001320338.1 150390289 5312598 2565213..2566043 1 NC_009633.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 2566043 5312598 Amet_2526 Alkaliphilus metalliredigens QYMF purine nucleoside phosphorylase YP_001320338.1 2565213 D 293826 CDS YP_001320339.1 150390290 5312599 2566046..2567365 1 NC_009633.1 TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase, family 3; Pyrimidine nucleoside phosphorylase, C-terminal domain; KEGG: cno:NT01CX_1499 pyrimidine-nucleoside phosphorylase; pyrimidine-nucleoside phosphorylase 2567365 5312599 Amet_2527 Alkaliphilus metalliredigens QYMF pyrimidine-nucleoside phosphorylase YP_001320339.1 2566046 D 293826 CDS YP_001320340.1 150390291 5312600 2567504..2568667 1 NC_009633.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: tte:TTE1314 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 2568667 5312600 Amet_2528 Alkaliphilus metalliredigens QYMF serine-type D-Ala-D-Ala carboxypeptidase YP_001320340.1 2567504 D 293826 CDS YP_001320341.1 150390292 5312601 2568750..2571377 1 NC_009633.1 PFAM: CBS domain containing protein; phosphoesterase, RecJ domain protein; Polynucleotide adenylyltransferase region; KEGG: cth:Cthe_0684 polynucleotide adenylyltransferase region; polynucleotide adenylyltransferase 2571377 5312601 Amet_2529 Alkaliphilus metalliredigens QYMF polynucleotide adenylyltransferase YP_001320341.1 2568750 D 293826 CDS YP_001320342.1 150390293 5312602 2571370..2571990 1 NC_009633.1 PFAM: peptidase M50; KEGG: tte:TTE1323 Zn-dependent protease; peptidase M50 2571990 5312602 Amet_2530 Alkaliphilus metalliredigens QYMF peptidase M50 YP_001320342.1 2571370 D 293826 CDS YP_001320343.1 150390294 5312603 2572001..2572747 1 NC_009633.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: bce:BC4058 segregation and condensation protein A; chromosome segregation and condensation protein ScpA 2572747 5312603 Amet_2531 Alkaliphilus metalliredigens QYMF chromosome segregation and condensation protein ScpA YP_001320343.1 2572001 D 293826 CDS YP_001320344.1 150390295 5312604 2572764..2573336 1 NC_009633.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: ctc:CTC01528 segregation and condensation protein B; putative transcriptional regulator 2573336 5312604 Amet_2532 Alkaliphilus metalliredigens QYMF putative transcriptional regulator YP_001320344.1 2572764 D 293826 CDS YP_001320345.1 150390296 5312605 2573342..2574187 1 NC_009633.1 TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: ctc:CTC02431 pyrroline-5-carboxylate reductase; pyrroline-5-carboxylate reductase 2574187 5312605 Amet_2533 Alkaliphilus metalliredigens QYMF pyrroline-5-carboxylate reductase YP_001320345.1 2573342 D 293826 CDS YP_001320346.1 150390297 5312606 2575154..2576272 1 NC_009633.1 PFAM: phage integrase family protein; KEGG: dsy:DSY1571 hypothetical protein; phage integrase family protein 2576272 5312606 Amet_2534 Alkaliphilus metalliredigens QYMF phage integrase family protein YP_001320346.1 2575154 D 293826 CDS YP_001320347.1 150390298 5312607 2576369..2576989 1 NC_009633.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 2576989 5312607 Amet_2535 Alkaliphilus metalliredigens QYMF LexA repressor YP_001320347.1 2576369 D 293826 CDS YP_001320348.1 150390299 5312608 2577202..2578662 1 NC_009633.1 KEGG: tte:TTE2242 transposase; transposase 2578662 5312608 Amet_2536 Alkaliphilus metalliredigens QYMF transposase YP_001320348.1 2577202 D 293826 CDS YP_001320349.1 150390300 5312609 complement(2578808..2580088) 1 NC_009633.1 PFAM: Aluminium resistance family protein; KEGG: cth:Cthe_0794 aluminium resistance protein; aluminium resistance family protein 2580088 5312609 Amet_2537 Alkaliphilus metalliredigens QYMF aluminium resistance family protein YP_001320349.1 2578808 R 293826 CDS YP_001320350.1 150390301 5312610 complement(2580380..2580934) 1 NC_009633.1 hypothetical protein 2580934 5312610 Amet_2538 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320350.1 2580380 R 293826 CDS YP_001320351.1 150390302 5312611 complement(2580915..2581520) 1 NC_009633.1 PFAM: GTP-binding protein, HSR1-related; HSR1-like GTP-binding protein 2581520 5312611 Amet_2539 Alkaliphilus metalliredigens QYMF HSR1-like GTP-binding protein YP_001320351.1 2580915 R 293826 CDS YP_001320352.1 150390303 5312612 complement(2581521..2582480) 1 NC_009633.1 PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: tte:TTE1366 ATPases of the AAA+ class; ATPase central domain-containing protein 2582480 5312612 Amet_2540 Alkaliphilus metalliredigens QYMF ATPase central domain-containing protein YP_001320352.1 2581521 R 293826 CDS YP_001320353.1 150390304 5312613 complement(2582670..2582912) 1 NC_009633.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: chy:CHY_1393 hfq protein; RNA chaperone Hfq 2582912 5312613 Amet_2541 Alkaliphilus metalliredigens QYMF RNA chaperone Hfq YP_001320353.1 2582670 R 293826 CDS YP_001320354.1 150390305 5312614 complement(2582949..2583887) 1 NC_009633.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 2583887 miaA 5312614 miaA Alkaliphilus metalliredigens QYMF tRNA delta(2)-isopentenylpyrophosphate transferase YP_001320354.1 2582949 R 293826 CDS YP_001320355.1 150390306 5312615 complement(2583903..2585816) 1 NC_009633.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 2585816 mutL 5312615 mutL Alkaliphilus metalliredigens QYMF DNA mismatch repair protein YP_001320355.1 2583903 R 293826 CDS YP_001320356.1 150390307 5312616 complement(2585856..2588498) 1 NC_009633.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 2588498 5312616 Amet_2544 Alkaliphilus metalliredigens QYMF DNA mismatch repair protein MutS YP_001320356.1 2585856 R 293826 CDS YP_001320357.1 150390308 5312617 complement(2588599..2590029) 1 NC_009633.1 KEGG: cth:Cthe_0783 RNA modification enzyme, MiaB family; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB; tRNA-i(6)A37 thiotransferase protein MiaB 2590029 5312617 Amet_2545 Alkaliphilus metalliredigens QYMF tRNA-i(6)A37 thiotransferase protein MiaB YP_001320357.1 2588599 R 293826 CDS YP_001320358.1 150390309 5312618 complement(2590109..2590426) 1 NC_009633.1 hypothetical protein 2590426 5312618 Amet_2546 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320358.1 2590109 R 293826 CDS YP_001320359.1 150390310 5312619 complement(2590416..2590688) 1 NC_009633.1 hypothetical protein 2590688 5312619 Amet_2547 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320359.1 2590416 R 293826 CDS YP_001320360.1 150390311 5312620 complement(2590702..2591670) 1 NC_009633.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; Sporulation domain protein; KEGG: bsu:BG10825 N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase, LytC amidase family; sporulation domain-containing protein 2591670 5312620 Amet_2548 Alkaliphilus metalliredigens QYMF sporulation domain-containing protein YP_001320360.1 2590702 R 293826 CDS YP_001320361.1 150390312 5312621 complement(2591685..2591930) 1 NC_009633.1 KEGG: cac:CAC1109 hypothetical protein, CF-8 family; hypothetical protein 2591930 5312621 Amet_2549 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320361.1 2591685 R 293826 CDS YP_001320362.1 150390313 5312622 complement(2592000..2593082) 1 NC_009633.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: shw:Sputw3181_2465 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase 2593082 5312622 Amet_2550 Alkaliphilus metalliredigens QYMF RNA-directed DNA polymerase YP_001320362.1 2592000 R 293826 CDS YP_001320363.1 150390314 5312624 complement(2593405..2593746) 1 NC_009633.1 KEGG: shw:Sputw3181_2466 hypothetical protein; hypothetical protein 2593746 5312624 Amet_2552 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320363.1 2593405 R 293826 CDS YP_001320364.1 150390315 5312625 complement(2593820..2594878) 1 NC_009633.1 KEGG: shw:Sputw3181_2467 hypothetical protein; hypothetical protein 2594878 5312625 Amet_2553 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320364.1 2593820 R 293826 CDS YP_001320365.1 150390316 5312626 complement(2594878..2595231) 1 NC_009633.1 hypothetical protein 2595231 5312626 Amet_2554 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320365.1 2594878 R 293826 CDS YP_001320366.1 150390317 5312627 complement(2595234..2595395) 1 NC_009633.1 hypothetical protein 2595395 5312627 Amet_2555 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320366.1 2595234 R 293826 CDS YP_001320367.1 150390318 5312628 complement(2595395..2595838) 1 NC_009633.1 hypothetical protein 2595838 5312628 Amet_2556 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320367.1 2595395 R 293826 CDS YP_001320368.1 150390319 5312629 complement(2595840..2596139) 1 NC_009633.1 hypothetical protein 2596139 5312629 Amet_2557 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320368.1 2595840 R 293826 CDS YP_001320369.1 150390320 5312630 complement(2596139..2597035) 1 NC_009633.1 hypothetical protein 2597035 5312630 Amet_2558 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320369.1 2596139 R 293826 CDS YP_001320370.1 150390321 5312631 complement(2597032..2598168) 1 NC_009633.1 PFAM: Baseplate J family protein; KEGG: ctc:CTC02115 phage-like element pbsx protein XkdT; baseplate J family protein 2598168 5312631 Amet_2559 Alkaliphilus metalliredigens QYMF baseplate J family protein YP_001320370.1 2597032 R 293826 CDS YP_001320371.1 150390322 5312632 complement(2598173..2598637) 1 NC_009633.1 KEGG: ctc:CTC02116 phage-like element pbsx protein XkdS; phage-like element pbsx protein XkdS 2598637 5312632 Amet_2560 Alkaliphilus metalliredigens QYMF phage-like element pbsx protein XkdS YP_001320371.1 2598173 R 293826 CDS YP_001320372.1 150390323 5312633 complement(2598637..2599047) 1 NC_009633.1 hypothetical protein 2599047 5312633 Amet_2561 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320372.1 2598637 R 293826 CDS YP_001320373.1 150390324 5312634 complement(2599034..2599987) 1 NC_009633.1 hypothetical protein 2599987 5312634 Amet_2562 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320373.1 2599034 R 293826 CDS YP_001320374.1 150390325 5312635 complement(2599993..2600643) 1 NC_009633.1 PFAM: Peptidoglycan-binding LysM; KEGG: bsu:BG11550 phage-like element PBSX protein; peptidoglycan-binding protein LysM 2600643 5312635 Amet_2563 Alkaliphilus metalliredigens QYMF peptidoglycan-binding protein LysM YP_001320374.1 2599993 R 293826 CDS YP_001320375.1 150390326 5312636 complement(2600654..2603035) 1 NC_009633.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: ctc:CTC01100 phage protein, similar to tail length tape measure protein; TP901 family phage tail tape measure protein 2603035 5312636 Amet_2564 Alkaliphilus metalliredigens QYMF TP901 family phage tail tape measure protein YP_001320375.1 2600654 R 293826 CDS YP_001320376.1 150390327 5312637 complement(2603036..2603188) 1 NC_009633.1 hypothetical protein 2603188 5312637 Amet_2565 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320376.1 2603036 R 293826 CDS YP_001320377.1 150390328 5312638 complement(2603242..2603691) 1 NC_009633.1 PFAM: Phage XkdN-like protein; KEGG: lga:LGAS_0680 phage related protein; Phage XkdN-like protein 2603691 5312638 Amet_2566 Alkaliphilus metalliredigens QYMF Phage XkdN-like protein YP_001320377.1 2603242 R 293826 CDS YP_001320378.1 150390329 5312639 complement(2603708..2604118) 1 NC_009633.1 KEGG: bsu:BG11547 phage-like element PBSX protein; phage-like element PBSX protein 2604118 5312639 Amet_2567 Alkaliphilus metalliredigens QYMF phage-like element PBSX protein YP_001320378.1 2603708 R 293826 CDS YP_001320379.1 150390330 5312640 complement(2604136..2605548) 1 NC_009633.1 KEGG: lin:lin1278 hypothetical protein; hypothetical protein 2605548 5312640 Amet_2568 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320379.1 2604136 R 293826 CDS YP_001320380.1 150390331 5312641 complement(2605551..2605781) 1 NC_009633.1 hypothetical protein 2605781 5312641 Amet_2569 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320380.1 2605551 R 293826 CDS YP_001320381.1 150390332 5312642 complement(2605793..2606611) 1 NC_009633.1 hypothetical protein 2606611 5312642 Amet_2570 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320381.1 2605793 R 293826 CDS YP_001320382.1 150390333 5312643 complement(2606622..2607032) 1 NC_009633.1 hypothetical protein 2607032 5312643 Amet_2571 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320382.1 2606622 R 293826 CDS YP_001320383.1 150390334 5312644 complement(2607032..2607409) 1 NC_009633.1 hypothetical protein 2607409 5312644 Amet_2572 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320383.1 2607032 R 293826 CDS YP_001320384.1 150390335 5312645 complement(2607409..2607729) 1 NC_009633.1 hypothetical protein 2607729 5312645 Amet_2573 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320384.1 2607409 R 293826 CDS YP_001320385.1 150390336 5312646 complement(2607770..2608804) 1 NC_009633.1 hypothetical protein 2608804 5312646 Amet_2574 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320385.1 2607770 R 293826 CDS YP_001320386.1 150390337 5312647 complement(2608816..2609226) 1 NC_009633.1 hypothetical protein 2609226 5312647 Amet_2575 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320386.1 2608816 R 293826 CDS YP_001320387.1 150390338 5312648 complement(2609245..2610621) 1 NC_009633.1 hypothetical protein 2610621 5312648 Amet_2576 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320387.1 2609245 R 293826 CDS YP_001320388.1 150390339 5312649 complement(2610639..2611655) 1 NC_009633.1 KEGG: gfo:orf2413 hypothetical protein; hypothetical protein 2611655 5312649 Amet_2577 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320388.1 2610639 R 293826 CDS YP_001320389.1 150390340 5312650 complement(2611648..2613144) 1 NC_009633.1 hypothetical protein 2613144 5312650 Amet_2578 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320389.1 2611648 R 293826 CDS YP_001320390.1 150390341 5312651 complement(2613137..2614546) 1 NC_009633.1 KEGG: rru:Rru_A2590 hypothetical protein; hypothetical protein 2614546 5312651 Amet_2579 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320390.1 2613137 R 293826 CDS YP_001320391.1 150390342 5312652 complement(2614539..2615393) 1 NC_009633.1 KEGG: bld:BLi01463 YqaS; YqaS 2615393 5312652 Amet_2580 Alkaliphilus metalliredigens QYMF YqaS YP_001320391.1 2614539 R 293826 CDS YP_001320392.1 150390343 5312653 complement(2615437..2615628) 1 NC_009633.1 hypothetical protein 2615628 5312653 Amet_2581 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320392.1 2615437 R 293826 CDS YP_001320393.1 150390344 5312654 complement(2615672..2616946) 1 NC_009633.1 PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; KEGG: cth:Cthe_1729 DNA methylase N-4/N-6; DNA methylase N-4/N-6 domain-containing protein 2616946 5312654 Amet_2582 Alkaliphilus metalliredigens QYMF DNA methylase N-4/N-6 domain-containing protein YP_001320393.1 2615672 R 293826 CDS YP_001320394.1 150390345 5312655 complement(2617036..2617530) 1 NC_009633.1 KEGG: cac:CAC0550 possible sigma factor; putative sigma factor 2617530 5312655 Amet_2583 Alkaliphilus metalliredigens QYMF putative sigma factor YP_001320394.1 2617036 R 293826 CDS YP_001320395.1 150390346 5312656 complement(2617541..2618233) 1 NC_009633.1 PFAM: protein of unknown function DUF968; KEGG: lin:lin1740 hypothetical protein; hypothetical protein 2618233 5312656 Amet_2584 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320395.1 2617541 R 293826 CDS YP_001320396.1 150390347 5312657 complement(2618296..2618712) 1 NC_009633.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cac:CAC3723 single strand DNA binding protein, SSB; single-strand binding protein 2618712 5312657 Amet_2585 Alkaliphilus metalliredigens QYMF single-strand binding protein YP_001320396.1 2618296 R 293826 CDS YP_001320397.1 150390348 5312658 complement(2618741..2619187) 1 NC_009633.1 hypothetical protein 2619187 5312658 Amet_2586 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320397.1 2618741 R 293826 CDS YP_001320398.1 150390349 5312659 complement(2619353..2619619) 1 NC_009633.1 hypothetical protein 2619619 5312659 Amet_2587 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320398.1 2619353 R 293826 CDS YP_001320399.1 150390350 5312660 complement(2619600..2619743) 1 NC_009633.1 hypothetical protein 2619743 5312660 Amet_2588 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320399.1 2619600 R 293826 CDS YP_001320400.1 150390351 5312661 complement(2619740..2619988) 1 NC_009633.1 hypothetical protein 2619988 5312661 Amet_2589 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320400.1 2619740 R 293826 CDS YP_001320401.1 150390352 5312662 complement(2619985..2620515) 1 NC_009633.1 hypothetical protein 2620515 5312662 Amet_2590 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320401.1 2619985 R 293826 CDS YP_001320402.1 150390353 5312663 complement(2620527..2620709) 1 NC_009633.1 hypothetical protein 2620709 5312663 Amet_2591 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320402.1 2620527 R 293826 CDS YP_001320403.1 150390354 5312664 complement(2620709..2620942) 1 NC_009633.1 hypothetical protein 2620942 5312664 Amet_2592 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320403.1 2620709 R 293826 CDS YP_001320404.1 150390355 5312665 complement(2620943..2621239) 1 NC_009633.1 hypothetical protein 2621239 5312665 Amet_2593 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320404.1 2620943 R 293826 CDS YP_001320405.1 150390356 5312666 complement(2621245..2621457) 1 NC_009633.1 hypothetical protein 2621457 5312666 Amet_2594 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320405.1 2621245 R 293826 CDS YP_001320406.1 150390357 5312667 complement(2621474..2621968) 1 NC_009633.1 KEGG: ptr:744052 hypothetical protein LOC744052; hypothetical protein 2621968 5312667 Amet_2595 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320406.1 2621474 R 293826 CDS YP_001320407.1 150390358 5312668 complement(2622384..2622866) 1 NC_009633.1 KEGG: ctc:CTC02141 hypothetical protein; hypothetical protein 2622866 5312668 Amet_2596 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320407.1 2622384 R 293826 CDS YP_001320408.1 150390359 5312669 complement(2622899..2623117) 1 NC_009633.1 hypothetical protein 2623117 5312669 Amet_2597 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320408.1 2622899 R 293826 CDS YP_001320409.1 150390360 5312670 complement(2623129..2623506) 1 NC_009633.1 PFAM: protein of unknown function DUF1064; KEGG: lin:lin0099 hypothetical protein; hypothetical protein 2623506 5312670 Amet_2598 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320409.1 2623129 R 293826 CDS YP_001320410.1 150390361 5312671 complement(2623659..2624450) 1 NC_009633.1 KEGG: bce:BC1875 phage protein; hypothetical protein 2624450 5312671 Amet_2599 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320410.1 2623659 R 293826 CDS YP_001320411.1 150390362 5312672 complement(2624450..2624683) 1 NC_009633.1 KEGG: bce:BC1874 phage protein; phage protein 2624683 5312672 Amet_2600 Alkaliphilus metalliredigens QYMF phage protein YP_001320411.1 2624450 R 293826 CDS YP_001320412.1 150390363 5312673 complement(2624683..2625435) 1 NC_009633.1 PFAM: IstB domain protein ATP-binding protein; KEGG: cac:CAC1933 hypothetical protein; IstB ATP binding domain-containing protein 2625435 5312673 Amet_2601 Alkaliphilus metalliredigens QYMF IstB ATP binding domain-containing protein YP_001320412.1 2624683 R 293826 CDS YP_001320413.1 150390364 5312674 complement(2625557..2626345) 1 NC_009633.1 TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: efa:EF1434 DnaD domain protein; primosome subunit DnaD 2626345 5312674 Amet_2602 Alkaliphilus metalliredigens QYMF primosome subunit DnaD YP_001320413.1 2625557 R 293826 CDS YP_001320414.1 150390365 5312675 complement(2626360..2627100) 1 NC_009633.1 KEGG: lin:lin1754 hypothetical protein; hypothetical protein 2627100 5312675 Amet_2603 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320414.1 2626360 R 293826 CDS YP_001320415.1 150390366 5312676 complement(2627101..2627895) 1 NC_009633.1 TIGRFAM: phage recombination protein Bet; PFAM: RecT protein; KEGG: lin:lin1755 hypothetical protein; phage recombination protein Bet 2627895 5312676 Amet_2604 Alkaliphilus metalliredigens QYMF phage recombination protein Bet YP_001320415.1 2627101 R 293826 CDS YP_001320416.1 150390367 5312677 complement(2627917..2628117) 1 NC_009633.1 hypothetical protein 2628117 5312677 Amet_2605 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320416.1 2627917 R 293826 CDS YP_001320417.1 150390368 5312678 complement(2628132..2630084) 1 NC_009633.1 KEGG: gfo:orf2459 hypothetical protein; hypothetical protein 2630084 5312678 Amet_2606 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320417.1 2628132 R 293826 CDS YP_001320418.1 150390369 5312679 complement(2630081..2630407) 1 NC_009633.1 hypothetical protein 2630407 5312679 Amet_2607 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320418.1 2630081 R 293826 CDS YP_001320419.1 150390370 5312680 complement(2630392..2630526) 1 NC_009633.1 hypothetical protein 2630526 5312680 Amet_2608 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320419.1 2630392 R 293826 CDS YP_001320420.1 150390371 5312681 complement(2630545..2630697) 1 NC_009633.1 hypothetical protein 2630697 5312681 Amet_2609 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320420.1 2630545 R 293826 CDS YP_001320421.1 150390372 5312682 complement(2630716..2630913) 1 NC_009633.1 hypothetical protein 2630913 5312682 Amet_2610 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320421.1 2630716 R 293826 CDS YP_001320422.1 150390373 5312683 complement(2630897..2631082) 1 NC_009633.1 hypothetical protein 2631082 5312683 Amet_2611 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320422.1 2630897 R 293826 CDS YP_001320423.1 150390374 5312684 complement(2631093..2631317) 1 NC_009633.1 PFAM: helix-turn-helix domain protein; KEGG: tte:TTE2124 helix-turn-helix; XRE family transcriptional regulator 2631317 5312684 Amet_2612 Alkaliphilus metalliredigens QYMF XRE family transcriptional regulator YP_001320423.1 2631093 R 293826 CDS YP_001320424.1 150390375 5312685 2631517..2631879 1 NC_009633.1 PFAM: helix-turn-helix domain protein; KEGG: gka:GK0493 transcriptional regulator; helix-turn-helix domain-containing protein 2631879 5312685 Amet_2613 Alkaliphilus metalliredigens QYMF helix-turn-helix domain-containing protein YP_001320424.1 2631517 D 293826 CDS YP_001320425.1 150390376 5312686 2631957..2632307 1 NC_009633.1 KEGG: gka:GK0550 hypothetical protein; hypothetical protein 2632307 5312686 Amet_2614 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320425.1 2631957 D 293826 CDS YP_001320426.1 150390377 5312687 2632709..2633215 1 NC_009633.1 hypothetical protein 2633215 5312687 Amet_2615 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320426.1 2632709 D 293826 CDS YP_001320427.1 150390378 5312688 2633306..2635006 1 NC_009633.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: cpf:CPF_2606 site-specific recombinase, resolvase family; resolvase domain-containing protein 2635006 5312688 Amet_2616 Alkaliphilus metalliredigens QYMF resolvase domain-containing protein YP_001320427.1 2633306 D 293826 CDS YP_001320428.1 150390379 5312689 complement(2635018..2635170) 1 NC_009633.1 hypothetical protein 2635170 5312689 Amet_2617 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320428.1 2635018 R 293826 CDS YP_001320429.1 150390380 5312690 2635373..2636572 1 NC_009633.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 2636572 5312690 Amet_2618 Alkaliphilus metalliredigens QYMF aspartate aminotransferase YP_001320429.1 2635373 D 293826 CDS YP_001320430.1 150390381 5312691 complement(2636745..2637410) 1 NC_009633.1 PFAM: regulatory protein, MerR; KEGG: cth:Cthe_0804 transcriptional regulator, MerR family; MerR family transcriptional regulator 2637410 5312691 Amet_2619 Alkaliphilus metalliredigens QYMF MerR family transcriptional regulator YP_001320430.1 2636745 R 293826 CDS YP_001320431.1 150390382 5312692 complement(2637586..2638590) 1 NC_009633.1 PFAM: peptidase M20; peptidase M42 family protein; KEGG: tte:TTE0443 Cellulase M and related proteins; cellulase 2638590 5312692 Amet_2620 Alkaliphilus metalliredigens QYMF cellulase YP_001320431.1 2637586 R 293826 CDS YP_001320432.1 150390383 5312693 complement(2638590..2639612) 1 NC_009633.1 PFAM: peptidase M18, aminopeptidase I; peptidase M42 family protein; KEGG: tte:TTE0442 Cellulase M and related proteins; cellulase 2639612 5312693 Amet_2621 Alkaliphilus metalliredigens QYMF cellulase YP_001320432.1 2638590 R 293826 CDS YP_001320433.1 150390384 5312694 complement(2639603..2640655) 1 NC_009633.1 PFAM: peptidase M20; peptidase M42 family protein; KEGG: tte:TTE0441 Cellulase M and related proteins; peptidase M42 family protein 2640655 5312694 Amet_2622 Alkaliphilus metalliredigens QYMF peptidase M42 family protein YP_001320433.1 2639603 R 293826 CDS YP_001320434.1 150390385 5312695 complement(2640798..2641574) 1 NC_009633.1 PFAM: MCP methyltransferase, CheR-type; KEGG: cth:Cthe_0717 MCP methyltransferase, CheR-type; protein-glutamate O-methyltransferase 2641574 5312695 Amet_2623 Alkaliphilus metalliredigens QYMF protein-glutamate O-methyltransferase YP_001320434.1 2640798 R 293826 CDS YP_001320435.1 150390386 5312696 complement(2641641..2642792) 1 NC_009633.1 PFAM: RNA binding S1 domain protein; KEGG: cno:NT01CX_1373 RpsA; RNA-binding S1 domain-containing protein 2642792 5312696 Amet_2624 Alkaliphilus metalliredigens QYMF RNA-binding S1 domain-containing protein YP_001320435.1 2641641 R 293826 CDS YP_001320436.1 150390387 5312697 complement(2642835..2643677) 1 NC_009633.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2643677 5312697 Amet_2625 Alkaliphilus metalliredigens QYMF 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_001320436.1 2642835 R 293826 CDS YP_001320437.1 150390388 5312698 complement(2643792..2644373) 1 NC_009633.1 TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: tte:TTE1351 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 2644373 5312698 Amet_2626 Alkaliphilus metalliredigens QYMF 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001320437.1 2643792 R 293826 CDS YP_001320438.1 150390389 5312699 complement(2644374..2645036) 1 NC_009633.1 TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: lme:LEUM_1293 cytidylate kinase; cytidylate kinase 2645036 5312699 Amet_2627 Alkaliphilus metalliredigens QYMF cytidylate kinase YP_001320438.1 2644374 R 293826 CDS YP_001320439.1 150390390 5312700 complement(2645298..2645735) 1 NC_009633.1 hypothetical protein 2645735 5312700 Amet_2628 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320439.1 2645298 R 293826 CDS YP_001320440.1 150390391 5312701 complement(2645755..2646984) 1 NC_009633.1 PFAM: glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tte:TTE1347 predicted flavoproteins; hypothetical protein 2646984 5312701 Amet_2629 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320440.1 2645755 R 293826 CDS YP_001320441.1 150390392 5312702 complement(2646977..2647609) 1 NC_009633.1 PFAM: Phosphoglycerate mutase; KEGG: tte:TTE1346 Phosphoglycerate mutase/fructose-2,6-bisphosphatase; phosphoglycerate mutase 2647609 5312702 Amet_2630 Alkaliphilus metalliredigens QYMF phosphoglycerate mutase YP_001320441.1 2646977 R 293826 CDS YP_001320442.1 150390393 5312703 complement(2647743..2648609) 1 NC_009633.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: ctc:CTC01318 transcriptional regulator, RpiR family; RpiR family transcriptional regulator 2648609 5312703 Amet_2631 Alkaliphilus metalliredigens QYMF RpiR family transcriptional regulator YP_001320442.1 2647743 R 293826 CDS YP_001320443.1 150390394 5312704 complement(2648629..2649168) 1 NC_009633.1 TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: tte:TTE1211 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit; pyruvate/ketoisovalerate oxidoreductase subunit gamma 2649168 5312704 Amet_2632 Alkaliphilus metalliredigens QYMF pyruvate/ketoisovalerate oxidoreductase subunit gamma YP_001320443.1 2648629 R 293826 CDS YP_001320444.1 150390395 5312705 complement(2649170..2649991) 1 NC_009633.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 2649991 5312705 Amet_2633 Alkaliphilus metalliredigens QYMF 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_001320444.1 2649170 R 293826 CDS YP_001320445.1 150390396 5312706 complement(2649991..2651127) 1 NC_009633.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tte:TTE1340 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 2651127 5312706 Amet_2634 Alkaliphilus metalliredigens QYMF pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_001320445.1 2649991 R 293826 CDS YP_001320446.1 150390397 5312707 complement(2651132..2651338) 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tte:TTE1216 ferredoxin 3; 4Fe-4S ferredoxin 2651338 5312707 Amet_2635 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001320446.1 2651132 R 293826 CDS YP_001320447.1 150390398 5312708 complement(2651514..2652278) 1 NC_009633.1 TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; KEGG: chy:CHY_0957 acid phosphatase SurE; stationary-phase survival protein SurE 2652278 5312708 Amet_2636 Alkaliphilus metalliredigens QYMF stationary-phase survival protein SurE YP_001320447.1 2651514 R 293826 CDS YP_001320448.1 150390399 5312709 2652297..2653037 1 NC_009633.1 KEGG: cth:Cthe_0704 hypothetical protein; hypothetical protein 2653037 5312709 Amet_2637 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320448.1 2652297 D 293826 CDS YP_001320449.1 150390400 5312710 complement(2653125..2654522) 1 NC_009633.1 Converts oxaloacetate to phosphoenolpyruvate using ATP as an energy source; oxaloacetate decarboxylase 2654522 5312710 Amet_2638 Alkaliphilus metalliredigens QYMF oxaloacetate decarboxylase YP_001320449.1 2653125 R 293826 CDS YP_001320450.1 150390401 5312711 complement(2654704..2655177) 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2655177 5312711 Amet_2639 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001320450.1 2654704 R 293826 CDS YP_001320451.1 150390402 5312712 complement(2655262..2655966) 1 NC_009633.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cth:Cthe_0693 pseudouridine synthase, Rsu; pseudouridine synthase 2655966 5312712 Amet_2640 Alkaliphilus metalliredigens QYMF pseudouridine synthase YP_001320451.1 2655262 R 293826 CDS YP_001320452.1 150390403 5312713 complement(2656007..2657287) 1 NC_009633.1 PFAM: glucose-inhibited division protein A; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cno:NT01CX_2042 hypothetical protein; glucose-inhibited division protein A 2657287 5312713 Amet_2641 Alkaliphilus metalliredigens QYMF glucose-inhibited division protein A YP_001320452.1 2656007 R 293826 CDS YP_001320453.1 150390404 5312714 complement(2657305..2658234) 1 NC_009633.1 KEGG: tte:TTE1329 hypothetical protein; hypothetical protein 2658234 5312714 Amet_2642 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320453.1 2657305 R 293826 CDS YP_001320454.1 150390405 5312715 complement(2658495..2659628) 1 NC_009633.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: tte:TTE1328 D-alanyl-D-alanine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 2659628 5312715 Amet_2643 Alkaliphilus metalliredigens QYMF serine-type D-Ala-D-Ala carboxypeptidase YP_001320454.1 2658495 R 293826 CDS YP_001320455.1 150390406 5312716 complement(2659895..2660317) 1 NC_009633.1 KEGG: gvi:glr4396 unknown protein; hypothetical protein 2660317 5312716 Amet_2644 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320455.1 2659895 R 293826 CDS YP_001320456.1 150390407 5312717 complement(2660406..2660855) 1 NC_009633.1 TIGRFAM: Sporulation protein YtfJ; KEGG: tte:TTE1327 hypothetical protein; sporulation protein YtfJ 2660855 5312717 Amet_2645 Alkaliphilus metalliredigens QYMF sporulation protein YtfJ YP_001320456.1 2660406 R 293826 CDS YP_001320457.1 150390408 5312718 complement(2660848..2661483) 1 NC_009633.1 KEGG: bsu:BG13848 hypothetical protein; hypothetical protein 2661483 5312718 Amet_2646 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320457.1 2660848 R 293826 CDS YP_001320458.1 150390409 5312719 2661764..2662303 1 NC_009633.1 PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: cpr:CPR_1934 DNA-binding protein; XRE family transcriptional regulator 2662303 5312719 Amet_2647 Alkaliphilus metalliredigens QYMF XRE family transcriptional regulator YP_001320458.1 2661764 D 293826 CDS YP_001320459.1 150390410 5312720 2662321..2662734 1 NC_009633.1 PFAM: S-adenosylmethionine decarboxylase related; KEGG: tma:TM0655 S-adenosylmethionine decarboxylase; S-adenosylmethionine decarboxylase-like protein 2662734 5312720 Amet_2648 Alkaliphilus metalliredigens QYMF S-adenosylmethionine decarboxylase-like protein YP_001320459.1 2662321 D 293826 CDS YP_001320460.1 150390411 5312721 2662959..2663813 1 NC_009633.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 2663813 5312721 Amet_2649 Alkaliphilus metalliredigens QYMF spermidine synthase YP_001320460.1 2662959 D 293826 CDS YP_001320461.1 150390412 5312722 2663800..2664648 1 NC_009633.1 TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: cpe:CPE0551 probable agmatinase; putative agmatinase 2664648 5312722 Amet_2650 Alkaliphilus metalliredigens QYMF putative agmatinase YP_001320461.1 2663800 D 293826 CDS YP_001320462.1 150390413 5312723 2664972..2666846 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase; transposase, IS4 family protein 2666846 5312723 Amet_2651 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001320462.1 2664972 D 293826 CDS YP_001320463.1 150390414 5312724 complement(2666936..2668369) 1 NC_009633.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 2668369 5312724 Amet_2652 Alkaliphilus metalliredigens QYMF adenylosuccinate lyase YP_001320463.1 2666936 R 293826 CDS YP_001320464.1 150390415 5312725 complement(2668455..2669648) 1 NC_009633.1 PFAM: aminotransferase, class I and II; KEGG: cth:Cthe_0755 aminotransferase, class I and II; class I and II aminotransferase 2669648 5312725 Amet_2653 Alkaliphilus metalliredigens QYMF class I and II aminotransferase YP_001320464.1 2668455 R 293826 CDS YP_001320465.1 150390416 5312726 complement(2669790..2670167) 1 NC_009633.1 PFAM: transcriptional regulator PadR family protein; KEGG: rxy:Rxyl_2059 transcriptional regulator, PadR-like family; PadR-like family transcriptional regulator 2670167 5312726 Amet_2654 Alkaliphilus metalliredigens QYMF PadR-like family transcriptional regulator YP_001320465.1 2669790 R 293826 CDS YP_001320466.1 150390417 5312727 complement(2670174..2671004) 1 NC_009633.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: tte:TTE1369 predicted metal-dependent phosphoesterases (PHP family); phosphotransferase domain-containing protein 2671004 5312727 Amet_2655 Alkaliphilus metalliredigens QYMF phosphotransferase domain-containing protein YP_001320466.1 2670174 R 293826 CDS YP_001320467.1 150390418 5312728 complement(2671225..2671485) 1 NC_009633.1 PFAM: Stage V sporulation protein S; KEGG: bld:BLi01921 SpoVS; stage V sporulation protein S 2671485 5312728 Amet_2656 Alkaliphilus metalliredigens QYMF stage V sporulation protein S YP_001320467.1 2671225 R 293826 CDS YP_001320468.1 150390419 5312729 complement(2671718..2673145) 1 NC_009633.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 2673145 5312729 Amet_2657 Alkaliphilus metalliredigens QYMF phosphodiesterase YP_001320468.1 2671718 R 293826 CDS YP_001320469.1 150390420 5312730 complement(2673451..2674494) 1 NC_009633.1 KEGG: cth:Cthe_1050 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein 2674494 5312730 Amet_2658 Alkaliphilus metalliredigens QYMF recA protein YP_001320469.1 2673451 R 293826 CDS YP_001320470.1 150390421 5312731 complement(2674695..2675231) 1 NC_009633.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: tte:TTE1376 Phosphatidylglycerophosphate synthase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2675231 5312731 Amet_2659 Alkaliphilus metalliredigens QYMF CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001320470.1 2674695 R 293826 CDS YP_001320471.1 150390422 5312732 complement(2675215..2676555) 1 NC_009633.1 KEGG: tte:TTE1377 2-methylthioadenine synthetase; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein YliG 2676555 5312732 Amet_2660 Alkaliphilus metalliredigens QYMF MiaB-like tRNA modifying protein YliG YP_001320471.1 2675215 R 293826 CDS YP_001320472.1 150390423 5312733 complement(2676558..2677646) 1 NC_009633.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 2677646 5312733 Amet_2661 Alkaliphilus metalliredigens QYMF tRNA 2-selenouridine synthase YP_001320472.1 2676558 R 293826 CDS YP_001320473.1 150390424 5312734 complement(2677656..2679986) 1 NC_009633.1 PFAM: cell division protein FtsK/SpoIIIE SMART: AAA ATPase; KEGG: ctc:CTC01286 putative stage III sporulation protein E; cell division protein FtsK 2679986 5312734 Amet_2662 Alkaliphilus metalliredigens QYMF cell division protein FtsK YP_001320473.1 2677656 R 293826 CDS YP_001320474.1 150390425 5312735 complement(2680276..2681040) 1 NC_009633.1 PFAM: peptidase S14, ClpP; KEGG: tte:TTE1381 protease subunit of ATP-dependent Clp protease; peptidase S14, ClpP 2681040 5312735 Amet_2663 Alkaliphilus metalliredigens QYMF peptidase S14, ClpP YP_001320474.1 2680276 R 293826 CDS YP_001320475.1 150390426 5312736 complement(2681294..2681554) 1 NC_009633.1 TIGRFAM: Sporulation protein YlmC/YmxH; PFAM: PRC-barrel domain protein; KEGG: tte:TTE1383 hypothetical protein; sporulation protein YlmC/YmxH 2681554 5312736 Amet_2664 Alkaliphilus metalliredigens QYMF sporulation protein YlmC/YmxH YP_001320475.1 2681294 R 293826 CDS YP_001320476.1 150390427 5312737 complement(2681775..2682995) 1 NC_009633.1 PFAM: peptidase M16 domain protein; KEGG: cth:Cthe_0419 peptidase M16-like protein; peptidase M16 domain-containing protein 2682995 5312737 Amet_2665 Alkaliphilus metalliredigens QYMF peptidase M16 domain-containing protein YP_001320476.1 2681775 R 293826 CDS YP_001320477.1 150390428 5312738 complement(2683058..2683792) 1 NC_009633.1 PFAM: polysaccharide deacetylase; KEGG: tte:TTE1386 predicted xylanase/chitin deacetylase; polysaccharide deacetylase 2683792 5312738 Amet_2666 Alkaliphilus metalliredigens QYMF polysaccharide deacetylase YP_001320477.1 2683058 R 293826 CDS YP_001320478.1 150390429 5312739 complement(2683901..2686015) 1 NC_009633.1 PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: tte:TTE1387 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase); polynucleotide phosphorylase/polyadenylase 2686015 5312739 Amet_2667 Alkaliphilus metalliredigens QYMF polynucleotide phosphorylase/polyadenylase YP_001320478.1 2683901 R 293826 CDS YP_001320479.1 150390430 5312740 complement(2686248..2686511) 1 NC_009633.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 2686511 rpsO 5312740 rpsO Alkaliphilus metalliredigens QYMF 30S ribosomal protein S15 YP_001320479.1 2686248 R 293826 CDS YP_001320480.1 150390431 5312741 complement(2686616..2687539) 1 NC_009633.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: cth:Cthe_0987 riboflavin biosynthesis protein RibF; riboflavin biosynthesis protein RibF 2687539 5312741 Amet_2669 Alkaliphilus metalliredigens QYMF riboflavin biosynthesis protein RibF YP_001320480.1 2686616 R 293826 CDS YP_001320481.1 150390432 5312742 complement(2687553..2688443) 1 NC_009633.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 2688443 truB 5312742 truB Alkaliphilus metalliredigens QYMF tRNA pseudouridine synthase B YP_001320481.1 2687553 R 293826 CDS YP_001320482.1 150390433 5312743 complement(2688448..2689422) 1 NC_009633.1 PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: tte:TTE1391 exopolyphosphatase-related proteins; phosphoesterase domain-containing protein 2689422 5312743 Amet_2671 Alkaliphilus metalliredigens QYMF phosphoesterase domain-containing protein YP_001320482.1 2688448 R 293826 CDS YP_001320483.1 150390434 5312744 complement(2689400..2689816) 1 NC_009633.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 2689816 rbfA 5312744 rbfA Alkaliphilus metalliredigens QYMF ribosome-binding factor A YP_001320483.1 2689400 R 293826 CDS YP_001320484.1 150390435 5312745 complement(2689827..2691947) 1 NC_009633.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 2691947 infB 5312745 infB Alkaliphilus metalliredigens QYMF translation initiation factor IF-2 YP_001320484.1 2689827 R 293826 CDS YP_001320485.1 150390436 5312746 complement(2691986..2692297) 1 NC_009633.1 PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: ser:SERP0835 30S ribosomal protein L7Ae, putative; 50S ribosomal protein L7Ae/L30e/S12e/Gadd45 2692297 5312746 Amet_2674 Alkaliphilus metalliredigens QYMF 50S ribosomal protein L7Ae/L30e/S12e/Gadd45 YP_001320485.1 2691986 R 293826 CDS YP_001320486.1 150390437 5312747 complement(2692281..2692559) 1 NC_009633.1 PFAM: protein of unknown function DUF448; KEGG: cth:Cthe_0993 protein of unknown function DUF448; hypothetical protein 2692559 5312747 Amet_2675 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320486.1 2692281 R 293826 CDS YP_001320487.1 150390438 5312748 complement(2692570..2693610) 1 NC_009633.1 TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; KH, type 1, domain protein; NusA N-terminal domain protein; SMART: KH domain protein; KEGG: dsy:DSY2520 hypothetical protein; NusA antitermination factor 2693610 5312748 Amet_2676 Alkaliphilus metalliredigens QYMF NusA antitermination factor YP_001320487.1 2692570 R 293826 CDS YP_001320488.1 150390439 5312749 complement(2693627..2694085) 1 NC_009633.1 PFAM: protein of unknown function DUF150; KEGG: cth:Cthe_0995 protein of unknown function DUF150; hypothetical protein 2694085 5312749 Amet_2677 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320488.1 2693627 R 293826 CDS YP_001320489.1 150390440 5312750 complement(2694274..2698572) 1 NC_009633.1 KEGG: cth:Cthe_0996 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, epsilon subunit; DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; Exonuclease, RNase T and DNA polymerase III; SMART: phosphoesterase PHP domain protein; Exonuclease; DNA polymerase III subunit alpha 2698572 5312750 Amet_2678 Alkaliphilus metalliredigens QYMF DNA polymerase III subunit alpha YP_001320489.1 2694274 R 293826 CDS YP_001320490.1 150390441 5312751 complement(2698585..2699211) 1 NC_009633.1 PFAM: glycosyl transferase, family 2; KEGG: tte:TTE1399 glycosyltransferase involved in cell wall biogenesis; glycosyl transferase family protein 2699211 5312751 Amet_2679 Alkaliphilus metalliredigens QYMF glycosyl transferase family protein YP_001320490.1 2698585 R 293826 CDS YP_001320491.1 150390442 5312752 complement(2699229..2700275) 1 NC_009633.1 TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; KEGG: tte:TTE1400 Essential bacterial protein, involved in density-dependent regulation of peptidoglycan biosynthesis; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 2700275 5312752 Amet_2680 Alkaliphilus metalliredigens QYMF 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_001320491.1 2699229 R 293826 CDS YP_001320492.1 150390443 5312753 complement(2700421..2701464) 1 NC_009633.1 TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: tte:TTE1401 predicted membrane-associated Zn-dependent protease 1; putative membrane-associated zinc metalloprotease 2701464 5312753 Amet_2681 Alkaliphilus metalliredigens QYMF putative membrane-associated zinc metalloprotease YP_001320492.1 2700421 R 293826 CDS YP_001320493.1 150390444 5312754 complement(2701440..2702588) 1 NC_009633.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2702588 5312754 Amet_2682 Alkaliphilus metalliredigens QYMF 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_001320493.1 2701440 R 293826 CDS YP_001320494.1 150390445 5312755 complement(2702747..2703529) 1 NC_009633.1 PFAM: phosphatidate cytidylyltransferase; KEGG: ctc:CTC01266 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 2703529 5312755 Amet_2683 Alkaliphilus metalliredigens QYMF phosphatidate cytidylyltransferase YP_001320494.1 2702747 R 293826 CDS YP_001320495.1 150390446 5312756 complement(2703542..2704288) 1 NC_009633.1 TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: ctc:CTC01265 undecaprenyl pyrophosphate synthetase; undecaprenyl diphosphate synthase 2704288 5312756 Amet_2684 Alkaliphilus metalliredigens QYMF undecaprenyl diphosphate synthase YP_001320495.1 2703542 R 293826 CDS YP_001320496.1 150390447 5312757 complement(2704342..2704530) 1 NC_009633.1 hypothetical protein 2704530 5312757 Amet_2685 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320496.1 2704342 R 293826 CDS YP_001320497.1 150390448 5312758 complement(2704533..2705090) 1 NC_009633.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 2705090 frr 5312758 frr Alkaliphilus metalliredigens QYMF ribosome recycling factor YP_001320497.1 2704533 R 293826 CDS YP_001320498.1 150390449 5312759 complement(2705241..2705951) 1 NC_009633.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 2705951 pyrH 5312759 pyrH Alkaliphilus metalliredigens QYMF uridylate kinase YP_001320498.1 2705241 R 293826 CDS YP_001320499.1 150390450 5312760 complement(2706130..2706777) 1 NC_009633.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 2706777 tsf 5312760 tsf Alkaliphilus metalliredigens QYMF elongation factor Ts YP_001320499.1 2706130 R 293826 CDS YP_001320500.1 150390451 5312761 complement(2706851..2707549) 1 NC_009633.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 2707549 rpsB 5312761 rpsB Alkaliphilus metalliredigens QYMF 30S ribosomal protein S2 YP_001320500.1 2706851 R 293826 CDS YP_001320501.1 150390452 5312762 complement(2707712..2708170) 1 NC_009633.1 hypothetical protein 2708170 5312762 Amet_2690 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320501.1 2707712 R 293826 CDS YP_001320502.1 150390453 5312763 complement(2708172..2708714) 1 NC_009633.1 hypothetical protein 2708714 5312763 Amet_2691 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320502.1 2708172 R 293826 CDS YP_001320503.1 150390454 5312764 complement(2708750..2709061) 1 NC_009633.1 hypothetical protein 2709061 5312764 Amet_2692 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320503.1 2708750 R 293826 CDS YP_001320504.1 150390455 5312765 complement(2709073..2710887) 1 NC_009633.1 PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 protein of unknown function DUF342; hypothetical protein 2710887 5312765 Amet_2693 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320504.1 2709073 R 293826 CDS YP_001320505.1 150390456 5312766 complement(2710954..2711685) 1 NC_009633.1 TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma-70; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO5621 RNA polymerase sigma factor WhiG; RNA polymerase sigma-28 subunit FliA/WhiG 2711685 5312766 Amet_2694 Alkaliphilus metalliredigens QYMF RNA polymerase sigma-28 subunit FliA/WhiG YP_001320505.1 2710954 R 293826 CDS YP_001320506.1 150390457 5312767 complement(2711702..2712190) 1 NC_009633.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 2712190 5312767 Amet_2695 Alkaliphilus metalliredigens QYMF chemoreceptor glutamine deamidase CheD YP_001320506.1 2711702 R 293826 CDS YP_001320507.1 150390458 5312768 complement(2712191..2712808) 1 NC_009633.1 PFAM: CheC domain protein; KEGG: tte:TTE1415 Chemotaxis protein CheC, inhibitor of MCP methylation; CheC, inhibitor of MCP methylation 2712808 5312768 Amet_2696 Alkaliphilus metalliredigens QYMF CheC, inhibitor of MCP methylation YP_001320507.1 2712191 R 293826 CDS YP_001320508.1 150390459 5312769 complement(2712829..2713275) 1 NC_009633.1 PFAM: CheW domain protein; KEGG: cth:Cthe_0491 CheW protein; putative CheW protein 2713275 5312769 Amet_2697 Alkaliphilus metalliredigens QYMF putative CheW protein YP_001320508.1 2712829 R 293826 CDS YP_001320509.1 150390460 5312770 complement(2713288..2715345) 1 NC_009633.1 PFAM: CheW domain protein; ATP-binding region, ATPase domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: cth:Cthe_0490 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase 2715345 5312770 Amet_2698 Alkaliphilus metalliredigens QYMF CheA signal transduction histidine kinase YP_001320509.1 2713288 R 293826 CDS YP_001320510.1 150390461 5312771 complement(2715349..2716422) 1 NC_009633.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: cth:Cthe_0489 response regulator receiver modulated CheB methylesterase; response regulator receiver modulated CheB methylesterase 2716422 5312771 Amet_2699 Alkaliphilus metalliredigens QYMF response regulator receiver modulated CheB methylesterase YP_001320510.1 2715349 R 293826 CDS YP_001320511.1 150390462 5312772 complement(2716423..2717079) 1 NC_009633.1 PFAM: type IV pilus assembly PilZ; KEGG: cth:Cthe_0488 type IV pilus assembly PilZ; type IV pilus assembly PilZ 2717079 5312772 Amet_2700 Alkaliphilus metalliredigens QYMF type IV pilus assembly PilZ YP_001320511.1 2716423 R 293826 CDS YP_001320512.1 150390463 5312773 complement(2717096..2718028) 1 NC_009633.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: cth:Cthe_0487 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 2718028 5312773 Amet_2701 Alkaliphilus metalliredigens QYMF cobyrinic acid a,c-diamide synthase YP_001320512.1 2717096 R 293826 CDS YP_001320513.1 150390464 5312774 complement(2718028..2719203) 1 NC_009633.1 PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; KEGG: cth:Cthe_0486 GTP-binding signal recognition particle SRP54, G-domain; GTP-binding signal recognition particle 2719203 5312774 Amet_2702 Alkaliphilus metalliredigens QYMF GTP-binding signal recognition particle YP_001320513.1 2718028 R 293826 CDS YP_001320514.1 150390465 5312775 complement(2719205..2721232) 1 NC_009633.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: cth:Cthe_0485 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA 2721232 5312775 Amet_2703 Alkaliphilus metalliredigens QYMF flagellar biosynthesis protein FlhA YP_001320514.1 2719205 R 293826 CDS YP_001320515.1 150390466 5312776 complement(2721244..2722329) 1 NC_009633.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: cth:Cthe_0484 flagellar biosynthetic protein FlhB; flagellar biosynthetic protein FlhB 2722329 5312776 Amet_2704 Alkaliphilus metalliredigens QYMF flagellar biosynthetic protein FlhB YP_001320515.1 2721244 R 293826 CDS YP_001320516.1 150390467 5312777 complement(2722334..2723125) 1 NC_009633.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 2723125 fliR 5312777 fliR Alkaliphilus metalliredigens QYMF flagellar biosynthesis protein FliR YP_001320516.1 2722334 R 293826 CDS YP_001320517.1 150390468 5312778 complement(2723138..2723407) 1 NC_009633.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: cth:Cthe_0482 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 2723407 5312778 Amet_2706 Alkaliphilus metalliredigens QYMF flagellar biosynthetic protein FliQ YP_001320517.1 2723138 R 293826 CDS YP_001320518.1 150390469 5312779 complement(2723422..2724225) 1 NC_009633.1 TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: gme:Gmet_3097 flagellar transport protein FliP; flagellar biosynthetic protein FliP 2724225 5312779 Amet_2707 Alkaliphilus metalliredigens QYMF flagellar biosynthetic protein FliP YP_001320518.1 2723422 R 293826 CDS YP_001320519.1 150390470 5312780 complement(2724206..2724613) 1 NC_009633.1 hypothetical protein 2724613 5312780 Amet_2708 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320519.1 2724206 R 293826 CDS YP_001320520.1 150390471 5312781 complement(2724631..2724993) 1 NC_009633.1 PFAM: response regulator receiver; KEGG: cth:Cthe_0479 response regulator receiver protein; response regulator receiver protein 2724993 5312781 Amet_2709 Alkaliphilus metalliredigens QYMF response regulator receiver protein YP_001320520.1 2724631 R 293826 CDS YP_001320521.1 150390472 5312782 complement(2725128..2726309) 1 NC_009633.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 2726309 5312782 Amet_2710 Alkaliphilus metalliredigens QYMF flagellar motor switch protein YP_001320521.1 2725128 R 293826 CDS YP_001320522.1 150390473 5312783 complement(2726302..2727297) 1 NC_009633.1 PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: cth:Cthe_0477 flagellar motor switch protein FliM; flagellar motor switch protein FliM 2727297 5312783 Amet_2711 Alkaliphilus metalliredigens QYMF flagellar motor switch protein FliM YP_001320522.1 2726302 R 293826 CDS YP_001320523.1 150390474 5312784 complement(2727310..2727726) 1 NC_009633.1 PFAM: flagellar basal body-associated protein FliL; KEGG: tte:TTE1431 flagellar basal body-associated protein; flagellar basal body-associated protein FliL 2727726 5312784 Amet_2712 Alkaliphilus metalliredigens QYMF flagellar basal body-associated protein FliL YP_001320523.1 2727310 R 293826 CDS YP_001320524.1 150390475 5312785 complement(2727750..2728481) 1 NC_009633.1 PFAM: OmpA/MotB domain protein; KEGG: mta:Moth_0782 OmpA/MotB; OmpA/MotB domain-containing protein 2728481 5312785 Amet_2713 Alkaliphilus metalliredigens QYMF OmpA/MotB domain-containing protein YP_001320524.1 2727750 R 293826 CDS YP_001320525.1 150390476 5312786 complement(2728497..2729285) 1 NC_009633.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3589 chemotaxis protein MotA; MotA/TolQ/ExbB proton channel 2729285 5312786 Amet_2714 Alkaliphilus metalliredigens QYMF MotA/TolQ/ExbB proton channel YP_001320525.1 2728497 R 293826 CDS YP_001320526.1 150390477 5312787 complement(2729313..2729510) 1 NC_009633.1 PFAM: flagellar FlbD family protein; KEGG: cac:CAC2153 flagellar protein flbD; flagellar FlbD family protein 2729510 5312787 Amet_2715 Alkaliphilus metalliredigens QYMF flagellar FlbD family protein YP_001320526.1 2729313 R 293826 CDS YP_001320527.1 150390478 5312788 complement(2729571..2730896) 1 NC_009633.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: tte:TTE1433 Flagellar basal body and hook proteins; hypothetical protein 2730896 5312788 Amet_2716 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320527.1 2729571 R 293826 CDS YP_001320528.1 150390479 5312789 complement(2730976..2731365) 1 NC_009633.1 TIGRFAM: flagellar operon protein; KEGG: cth:Cthe_0473 flagellar operon protein; flagellar operon protein 2731365 5312789 Amet_2717 Alkaliphilus metalliredigens QYMF flagellar operon protein YP_001320528.1 2730976 R 293826 CDS YP_001320529.1 150390480 5312790 complement(2731428..2731832) 1 NC_009633.1 PFAM: flagellar hook capping protein; KEGG: cth:Cthe_0472 flagellar hook capping protein; flagellar hook capping protein 2731832 5312790 Amet_2718 Alkaliphilus metalliredigens QYMF flagellar hook capping protein YP_001320529.1 2731428 R 293826 CDS YP_001320530.1 150390481 5312791 complement(2731845..2733242) 1 NC_009633.1 PFAM: flagellar hook-length control protein; KEGG: cth:Cthe_0471 flagellar hook-length control protein; flagellar hook-length control protein 2733242 5312791 Amet_2719 Alkaliphilus metalliredigens QYMF flagellar hook-length control protein YP_001320530.1 2731845 R 293826 CDS YP_001320531.1 150390482 5312792 complement(2733265..2734500) 1 NC_009633.1 hypothetical protein 2734500 5312792 Amet_2720 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320531.1 2733265 R 293826 CDS YP_001320532.1 150390483 5312793 complement(2734512..2734955) 1 NC_009633.1 TIGRFAM: flagellar export protein FliJ; KEGG: cth:Cthe_0469 flagellar export protein FliJ; flagellar export protein FliJ 2734955 5312793 Amet_2721 Alkaliphilus metalliredigens QYMF flagellar export protein FliJ YP_001320532.1 2734512 R 293826 CDS YP_001320533.1 150390484 5312794 complement(2734975..2736285) 1 NC_009633.1 KEGG: cth:Cthe_0468 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, alpha/beta subunit domain protein; SMART: AAA ATPase; flagellar protein export ATPase FliI 2736285 5312794 Amet_2722 Alkaliphilus metalliredigens QYMF flagellar protein export ATPase FliI YP_001320533.1 2734975 R 293826 CDS YP_001320534.1 150390485 5312795 complement(2736275..2737069) 1 NC_009633.1 KEGG: tte:TTE1440 flagellar biosynthesis/type III secretory pathway protein; flagellar biosynthesis/type III secretory pathway protein-like protein 2737069 5312795 Amet_2723 Alkaliphilus metalliredigens QYMF flagellar biosynthesis/type III secretory pathway protein-like protein YP_001320534.1 2736275 R 293826 CDS YP_001320535.1 150390486 5312796 complement(2737062..2738081) 1 NC_009633.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 2738081 fliG 5312796 fliG Alkaliphilus metalliredigens QYMF flagellar motor switch protein G YP_001320535.1 2737062 R 293826 CDS YP_001320536.1 150390487 5312797 complement(2738092..2739645) 1 NC_009633.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; KEGG: tte:TTE1442 flagellar biosynthesis/type III secretory pathway lipoprotein; flagellar M-ring protein FliF 2739645 5312797 Amet_2725 Alkaliphilus metalliredigens QYMF flagellar M-ring protein FliF YP_001320536.1 2738092 R 293826 CDS YP_001320537.1 150390488 5312798 complement(2739670..2739975) 1 NC_009633.1 TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: cth:Cthe_0464 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex subunit FliE 2739975 5312798 Amet_2726 Alkaliphilus metalliredigens QYMF flagellar hook-basal body complex subunit FliE YP_001320537.1 2739670 R 293826 CDS YP_001320538.1 150390489 5312799 complement(2739990..2740433) 1 NC_009633.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_0463 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC 2740433 5312799 Amet_2727 Alkaliphilus metalliredigens QYMF flagellar basal-body rod protein FlgC YP_001320538.1 2739990 R 293826 CDS YP_001320539.1 150390490 5312800 complement(2740436..2740846) 1 NC_009633.1 TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: tte:TTE1445 flagellar basal body protein; flagellar basal-body rod protein FlgB 2740846 5312800 Amet_2728 Alkaliphilus metalliredigens QYMF flagellar basal-body rod protein FlgB YP_001320539.1 2740436 R 293826 CDS YP_001320540.1 150390491 5312801 complement(2741381..2742583) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; SMART: GAF domain protein; KEGG: plt:Plut_2010 putative PAS/PAC sensor protein; GAF sensor signal transduction histidine kinase 2742583 5312801 Amet_2729 Alkaliphilus metalliredigens QYMF GAF sensor signal transduction histidine kinase YP_001320540.1 2741381 R 293826 CDS YP_001320541.1 150390492 5312803 2744109..2745569 1 NC_009633.1 KEGG: ctc:CTC00917 transposase; transposase 2745569 5312803 Amet_2731 Alkaliphilus metalliredigens QYMF transposase YP_001320541.1 2744109 D 293826 CDS YP_001320542.1 150390493 5312804 complement(2746366..2747319) 1 NC_009633.1 PFAM: response regulator receiver; CheW domain protein; KEGG: bha:BH2262 modulation of CheA activity in response to attractants (chemotaxis protein); putative CheW protein 2747319 5312804 Amet_2732 Alkaliphilus metalliredigens QYMF putative CheW protein YP_001320542.1 2746366 R 293826 CDS YP_001320543.1 150390494 5312805 complement(2747628..2748401) 1 NC_009633.1 PFAM: response regulator receiver; KEGG: cff:CFF8240_0377 DNA-binding response regulator; response regulator receiver protein 2748401 5312805 Amet_2733 Alkaliphilus metalliredigens QYMF response regulator receiver protein YP_001320543.1 2747628 R 293826 CDS YP_001320544.1 150390495 5312806 complement(2749278..2750057) 1 NC_009633.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 2750057 5312806 Amet_2734 Alkaliphilus metalliredigens QYMF transcriptional repressor CodY YP_001320544.1 2749278 R 293826 CDS YP_001320545.1 150390496 5312807 complement(2750382..2752466) 1 NC_009633.1 KEGG: bha:BH2467 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; DNA topoisomerase, type IA, zn finger domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; DNA topoisomerase I 2752466 5312807 Amet_2735 Alkaliphilus metalliredigens QYMF DNA topoisomerase I YP_001320545.1 2750382 R 293826 CDS YP_001320546.1 150390497 5312808 complement(2752539..2753636) 1 NC_009633.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: tte:TTE1450 predicted Rossmann-fold nucleotide-binding protein involved in DNA uptake; DNA protecting protein DprA 2753636 5312808 Amet_2736 Alkaliphilus metalliredigens QYMF DNA protecting protein DprA YP_001320546.1 2752539 R 293826 CDS YP_001320547.1 150390498 5312809 complement(2753641..2755176) 1 NC_009633.1 TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: cth:Cthe_0455 Mg chelatase, subunit ChlI; Mg chelatase subunit ChlI 2755176 5312809 Amet_2737 Alkaliphilus metalliredigens QYMF Mg chelatase subunit ChlI YP_001320547.1 2753641 R 293826 CDS YP_001320548.1 150390499 5312810 2755766..2757034 1 NC_009633.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: dsy:DSY4027 hypothetical protein; lysine 2,3-aminomutase YodO family protein 2757034 5312810 Amet_2738 Alkaliphilus metalliredigens QYMF lysine 2,3-aminomutase YodO family protein YP_001320548.1 2755766 D 293826 CDS YP_001320549.1 150390500 5312811 complement(2757323..2757667) 1 NC_009633.1 PFAM: protein of unknown function UPF0102; KEGG: cac:CAC1763 predicted endonuclease; hypothetical protein 2757667 5312811 Amet_2739 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320549.1 2757323 R 293826 CDS YP_001320550.1 150390501 5312812 complement(2757709..2758323) 1 NC_009633.1 PFAM: ribonuclease HII/HIII; KEGG: smu:SMU.994 putative ribonuclease HII; ribonuclease H 2758323 5312812 Amet_2740 Alkaliphilus metalliredigens QYMF ribonuclease H YP_001320550.1 2757709 R 293826 CDS YP_001320551.1 150390502 5312813 complement(2758371..2759228) 1 NC_009633.1 PFAM: GTP-binding protein, HSR1-related; KEGG: cno:NT01CX_2207 GTP-binding protein, putative; HSR1-like GTP-binding protein 2759228 5312813 Amet_2741 Alkaliphilus metalliredigens QYMF HSR1-like GTP-binding protein YP_001320551.1 2758371 R 293826 CDS YP_001320552.1 150390503 5312814 complement(2759400..2759753) 1 NC_009633.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 2759753 rplS 5312814 rplS Alkaliphilus metalliredigens QYMF 50S ribosomal protein L19 YP_001320552.1 2759400 R 293826 CDS YP_001320553.1 150390504 5312815 complement(2759859..2760602) 1 NC_009633.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 2760602 trmD 5312815 trmD Alkaliphilus metalliredigens QYMF tRNA (guanine-N(1)-)-methyltransferase YP_001320553.1 2759859 R 293826 CDS YP_001320554.1 150390505 5312816 complement(2760599..2761105) 1 NC_009633.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 2761105 rimM 5312816 rimM Alkaliphilus metalliredigens QYMF 16S rRNA-processing protein RimM YP_001320554.1 2760599 R 293826 CDS YP_001320555.1 150390506 5312817 complement(2761250..2761480) 1 NC_009633.1 KEGG: tte:TTE1460 predicted RNA-binding protein (KH domain); RNA-binding protein 2761480 5312817 Amet_2745 Alkaliphilus metalliredigens QYMF RNA-binding protein YP_001320555.1 2761250 R 293826 CDS YP_001320556.1 150390507 5312818 complement(2761507..2761752) 1 NC_009633.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 2761752 rpsP 5312818 rpsP Alkaliphilus metalliredigens QYMF 30S ribosomal protein S16 YP_001320556.1 2761507 R 293826 CDS YP_001320557.1 150390508 5312819 complement(2761810..2763153) 1 NC_009633.1 TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; KEGG: cth:Cthe_0770 signal recognition particle protein; signal recognition particle protein 2763153 5312819 Amet_2747 Alkaliphilus metalliredigens QYMF signal recognition particle protein YP_001320557.1 2761810 R 293826 CDS YP_001320558.1 150390509 5312820 complement(2763173..2763541) 1 NC_009633.1 PFAM: putative helix-turn-helix protein, YlxM/p13 family protein; Sigma-70, region 4 type 2; KEGG: bat:BAS3697 hypothetical protein; putative helix-turn-helix protein, YlxM/p13 family protein 2763541 5312820 Amet_2748 Alkaliphilus metalliredigens QYMF putative helix-turn-helix protein, YlxM/p13 family protein YP_001320558.1 2763173 R 293826 CDS YP_001320559.1 150390510 5312821 complement(2763675..2764946) 1 NC_009633.1 TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; KEGG: cth:Cthe_0926 signal recognition particle-docking protein FtsY; signal recognition particle-docking protein FtsY 2764946 5312821 Amet_2749 Alkaliphilus metalliredigens QYMF signal recognition particle-docking protein FtsY YP_001320559.1 2763675 R 293826 CDS YP_001320560.1 150390511 5312822 complement(2764957..2768541) 1 NC_009633.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: cth:Cthe_0927 chromosome segregation protein SMC; chromosome segregation protein SMC 2768541 5312822 Amet_2750 Alkaliphilus metalliredigens QYMF chromosome segregation protein SMC YP_001320560.1 2764957 R 293826 CDS YP_001320561.1 150390512 5312823 complement(2768616..2769659) 1 NC_009633.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tte:TTE1468 ELP3 component of the RNA polymerase II complex, consists of an N-terminal BioB/LipA-like domain and a C-terminal histone acetyltransferase domain (only BioB/LipA-like domain in Thermotoga); radical SAM domain-containing protein 2769659 5312823 Amet_2751 Alkaliphilus metalliredigens QYMF radical SAM domain-containing protein YP_001320561.1 2768616 R 293826 CDS YP_001320562.1 150390513 5312824 complement(2769652..2770371) 1 NC_009633.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 2770371 rnc 5312824 rnc Alkaliphilus metalliredigens QYMF ribonuclease III YP_001320562.1 2769652 R 293826 CDS YP_001320563.1 150390514 5312825 complement(2770651..2771895) 1 NC_009633.1 PFAM: Beta-ketoacyl synthase-like; KEGG: tte:TTE1470 3-oxoacyl-(acyl-carrier-protein) synthase; beta-ketoacyl synthase-like protein 2771895 5312825 Amet_2753 Alkaliphilus metalliredigens QYMF beta-ketoacyl synthase-like protein YP_001320563.1 2770651 R 293826 CDS YP_001320564.1 150390515 5312826 complement(2771947..2772177) 1 NC_009633.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: cac:CAC1747 acyl carrier protein, ACP; acyl carrier protein 2772177 5312826 Amet_2754 Alkaliphilus metalliredigens QYMF acyl carrier protein YP_001320564.1 2771947 R 293826 CDS YP_001320565.1 150390516 5312827 complement(2772273..2773019) 1 NC_009633.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: cno:NT01CX_0925 3-oxoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 2773019 5312827 Amet_2755 Alkaliphilus metalliredigens QYMF 3-oxoacyl-(acyl-carrier-protein) reductase YP_001320565.1 2772273 R 293826 CDS YP_001320566.1 150390517 5312828 complement(2773028..2773972) 1 NC_009633.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: cth:Cthe_0935 malonyl CoA-acyl carrier protein transacylase; malonyl CoA-acyl carrier protein transacylase 2773972 5312828 Amet_2756 Alkaliphilus metalliredigens QYMF malonyl CoA-acyl carrier protein transacylase YP_001320566.1 2773028 R 293826 CDS YP_001320567.1 150390518 5312829 complement(2773977..2774927) 1 NC_009633.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: tte:TTE1474 dioxygenases related to 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 2774927 5312829 Amet_2757 Alkaliphilus metalliredigens QYMF 2-nitropropane dioxygenase YP_001320567.1 2773977 R 293826 CDS YP_001320568.1 150390519 5312830 complement(2774929..2775942) 1 NC_009633.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 2775942 5312830 Amet_2758 Alkaliphilus metalliredigens QYMF 3-oxoacyl-ACP synthase YP_001320568.1 2774929 R 293826 CDS YP_001320569.1 150390520 5312831 complement(2775935..2776942) 1 NC_009633.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 2776942 5312831 Amet_2759 Alkaliphilus metalliredigens QYMF putative glycerol-3-phosphate acyltransferase PlsX YP_001320569.1 2775935 R 293826 CDS YP_001320570.1 150390521 5312832 complement(2776958..2777539) 1 NC_009633.1 negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria; fatty acid biosynthesis transcriptional regulator 2777539 5312832 Amet_2760 Alkaliphilus metalliredigens QYMF fatty acid biosynthesis transcriptional regulator YP_001320570.1 2776958 R 293826 CDS YP_001320571.1 150390522 5312833 complement(2777768..2777947) 1 NC_009633.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 2777947 rpmF 5312833 rpmF Alkaliphilus metalliredigens QYMF 50S ribosomal protein L32 YP_001320571.1 2777768 R 293826 CDS YP_001320572.1 150390523 5312834 complement(2777962..2778492) 1 NC_009633.1 PFAM: protein of unknown function DUF177; KEGG: ctc:CTC01241 hypothetical protein; hypothetical protein 2778492 5312834 Amet_2762 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320572.1 2777962 R 293826 CDS YP_001320573.1 150390524 5312835 complement(2778634..2779824) 1 NC_009633.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2779824 5312835 Amet_2763 Alkaliphilus metalliredigens QYMF acetate kinase YP_001320573.1 2778634 R 293826 CDS YP_001320574.1 150390525 5312836 2780123..2781397 1 NC_009633.1 PFAM: protein of unknown function DUF795; KEGG: cth:Cthe_1301 protein of unknown function DUF795; hypothetical protein 2781397 5312836 Amet_2764 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320574.1 2780123 D 293826 CDS YP_001320575.1 150390526 5312837 2781565..2782806 1 NC_009633.1 TIGRFAM: Sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein; KEGG: cth:Cthe_1274 nucleoside recognition; sporulation integral membrane protein YlbJ 2782806 5312837 Amet_2765 Alkaliphilus metalliredigens QYMF sporulation integral membrane protein YlbJ YP_001320575.1 2781565 D 293826 CDS YP_001320576.1 150390527 5312838 complement(2782803..2783252) 1 NC_009633.1 KEGG: tte:TTE1485 archaeal/vacuolar-type H+-ATPase subunit H; H+-ATPase subunit H 2783252 5312838 Amet_2766 Alkaliphilus metalliredigens QYMF H+-ATPase subunit H YP_001320576.1 2782803 R 293826 CDS YP_001320577.1 150390528 5312839 complement(2783291..2783764) 1 NC_009633.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 2783764 coaD 5312839 coaD Alkaliphilus metalliredigens QYMF phosphopantetheine adenylyltransferase YP_001320577.1 2783291 R 293826 CDS YP_001320578.1 150390529 5312840 complement(2783761..2784324) 1 NC_009633.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: cth:Cthe_1277 putative methyltransferase; putative methyltransferase 2784324 5312840 Amet_2768 Alkaliphilus metalliredigens QYMF putative methyltransferase YP_001320578.1 2783761 R 293826 CDS YP_001320579.1 150390530 5312841 complement(2784464..2784688) 1 NC_009633.1 PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: sth:STH1431 small acid-soluble spore protein; alpha/beta type small acid-soluble spore protein 2784688 5312841 Amet_2769 Alkaliphilus metalliredigens QYMF alpha/beta type small acid-soluble spore protein YP_001320579.1 2784464 R 293826 CDS YP_001320580.1 150390531 5312842 complement(2784770..2786830) 1 NC_009633.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 2786830 5312842 Amet_2770 Alkaliphilus metalliredigens QYMF ATP-dependent DNA helicase RecG YP_001320580.1 2784770 R 293826 CDS YP_001320581.1 150390532 5312843 complement(2786914..2788542) 1 NC_009633.1 PFAM: Dak phosphatase; KEGG: cpr:CPR_1703 DAK2 domain protein; Dak phosphatase 2788542 5312843 Amet_2771 Alkaliphilus metalliredigens QYMF Dak phosphatase YP_001320581.1 2786914 R 293826 CDS YP_001320582.1 150390533 5312844 complement(2788561..2788917) 1 NC_009633.1 PFAM: protein of unknown function DUF322; KEGG: cno:NT01CX_2234 alkaline shock protein, putative; hypothetical protein 2788917 5312844 Amet_2772 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320582.1 2788561 R 293826 CDS YP_001320583.1 150390534 5312845 2789232..2789423 1 NC_009633.1 required for 70S ribosome assembly; 50S ribosomal protein L28 2789423 rpmB 5312845 rpmB Alkaliphilus metalliredigens QYMF 50S ribosomal protein L28 YP_001320583.1 2789232 D 293826 CDS YP_001320584.1 150390535 5312847 complement(2790323..2792197) 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase; transposase, IS4 family protein 2792197 5312847 Amet_2775 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001320584.1 2790323 R 293826 CDS YP_001320585.1 150390536 5312848 complement(2792412..2793047) 1 NC_009633.1 TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic region; KEGG: tte:TTE1497 thiamine pyrophosphokinase; thiamine pyrophosphokinase 2793047 5312848 Amet_2776 Alkaliphilus metalliredigens QYMF thiamine pyrophosphokinase YP_001320585.1 2792412 R 293826 CDS YP_001320586.1 150390537 5312849 complement(2793060..2793722) 1 NC_009633.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: cth:Cthe_0576 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 2793722 5312849 Amet_2777 Alkaliphilus metalliredigens QYMF ribulose-phosphate 3-epimerase YP_001320586.1 2793060 R 293826 CDS YP_001320587.1 150390538 5312850 complement(2793725..2794603) 1 NC_009633.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: tte:TTE1499 predicted GTPases; ribosome small subunit-dependent GTPase A 2794603 5312850 Amet_2778 Alkaliphilus metalliredigens QYMF ribosome small subunit-dependent GTPase A YP_001320587.1 2793725 R 293826 CDS YP_001320588.1 150390539 5312851 complement(2794615..2796561) 1 NC_009633.1 PFAM: protein of unknown function RIO1; protein kinase; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; KEGG: cth:Cthe_0574 serine/threonine protein kinase; protein kinase 2796561 5312851 Amet_2779 Alkaliphilus metalliredigens QYMF protein kinase YP_001320588.1 2794615 R 293826 CDS YP_001320589.1 150390540 5312852 complement(2796566..2797315) 1 NC_009633.1 PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: cth:Cthe_0573 protein serine/threonine phosphatases; protein phosphatase 2C-like protein 2797315 5312852 Amet_2780 Alkaliphilus metalliredigens QYMF protein phosphatase 2C-like protein YP_001320589.1 2796566 R 293826 CDS YP_001320590.1 150390541 5312853 complement(2797346..2798404) 1 NC_009633.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 2798404 5312853 Amet_2781 Alkaliphilus metalliredigens QYMF ribosomal RNA large subunit methyltransferase N YP_001320590.1 2797346 R 293826 CDS YP_001320591.1 150390542 5312854 complement(2798428..2799762) 1 NC_009633.1 TIGRFAM: sun protein; putative RNA methylase, NOL1/NOP2/sun family; transcription antitermination factor NusB; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: cth:Cthe_0571 sun protein; sun protein 2799762 5312854 Amet_2782 Alkaliphilus metalliredigens QYMF sun protein YP_001320591.1 2798428 R 293826 CDS YP_001320592.1 150390543 5312855 complement(2799878..2800573) 1 NC_009633.1 PFAM: peptidase, membrane zinc metallopeptidase, putative; KEGG: ctc:CTC01221 hypothetical protein; peptidase, membrane zinc metallopeptidase 2800573 5312855 Amet_2783 Alkaliphilus metalliredigens QYMF peptidase, membrane zinc metallopeptidase YP_001320592.1 2799878 R 293826 CDS YP_001320593.1 150390544 5312856 complement(2800578..2801351) 1 NC_009633.1 PFAM: protein of unknown function DUF116; KEGG: mta:Moth_0899 hypothetical protein; hypothetical protein 2801351 5312856 Amet_2784 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320593.1 2800578 R 293826 CDS YP_001320594.1 150390545 5312857 complement(2801341..2802285) 1 NC_009633.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: ctc:CTC01220 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 2802285 5312857 Amet_2785 Alkaliphilus metalliredigens QYMF methionyl-tRNA formyltransferase YP_001320594.1 2801341 R 293826 CDS YP_001320595.1 150390546 5312858 complement(2802296..2802739) 1 NC_009633.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 2802739 def 5312858 def Alkaliphilus metalliredigens QYMF peptide deformylase YP_001320595.1 2802296 R 293826 CDS YP_001320596.1 150390547 5312859 complement(2802767..2805256) 1 NC_009633.1 TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cth:Cthe_0566 primosomal protein N'; primosomal protein N' 2805256 5312859 Amet_2787 Alkaliphilus metalliredigens QYMF primosomal protein N' YP_001320596.1 2802767 R 293826 CDS YP_001320597.1 150390548 5312860 complement(2805414..2806610) 1 NC_009633.1 TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: cth:Cthe_1313 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 2806610 5312860 Amet_2788 Alkaliphilus metalliredigens QYMF phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_001320597.1 2805414 R 293826 CDS YP_001320598.1 150390549 5312861 complement(2806623..2806829) 1 NC_009633.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 2806829 rpoZ 5312861 rpoZ Alkaliphilus metalliredigens QYMF DNA-directed RNA polymerase subunit omega YP_001320598.1 2806623 R 293826 CDS YP_001320599.1 150390550 5312862 complement(2806843..2807445) 1 NC_009633.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 2807445 gmk 5312862 gmk Alkaliphilus metalliredigens QYMF guanylate kinase YP_001320599.1 2806843 R 293826 CDS YP_001320600.1 150390551 5312863 complement(2807468..2807752) 1 NC_009633.1 PFAM: protein of unknown function DUF370; KEGG: cth:Cthe_1316 protein of unknown function DUF370; hypothetical protein 2807752 5312863 Amet_2791 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320600.1 2807468 R 293826 CDS YP_001320601.1 150390552 5312864 complement(2807772..2808653) 1 NC_009633.1 PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: cth:Cthe_1317 hypothetical protein; hypothetical protein 2808653 5312864 Amet_2792 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320601.1 2807772 R 293826 CDS YP_001320602.1 150390553 5312865 complement(2808671..2809522) 1 NC_009633.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 2809522 dapF 5312865 dapF Alkaliphilus metalliredigens QYMF diaminopimelate epimerase YP_001320602.1 2808671 R 293826 CDS YP_001320603.1 150390554 5312866 2809862..2811640 1 NC_009633.1 PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein; fibronectin-binding A domain-containing protein 2811640 5312866 Amet_2794 Alkaliphilus metalliredigens QYMF fibronectin-binding A domain-containing protein YP_001320603.1 2809862 D 293826 CDS YP_001320604.1 150390555 5312867 complement(2811698..2812246) 1 NC_009633.1 PFAM: phosphoribosyltransferase; KEGG: swo:Swol_1285 uracil phosphoribosyltransferase; uracil phosphoribosyltransferase 2812246 5312867 Amet_2795 Alkaliphilus metalliredigens QYMF uracil phosphoribosyltransferase YP_001320604.1 2811698 R 293826 CDS YP_001320605.1 150390556 5312868 complement(2812272..2813204) 1 NC_009633.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: tte:TTE1538 Pseudouridylate synthase, 23S RNA-specific; RluA family pseudouridine synthase 2813204 5312868 Amet_2796 Alkaliphilus metalliredigens QYMF RluA family pseudouridine synthase YP_001320605.1 2812272 R 293826 CDS YP_001320606.1 150390557 5312869 complement(2813219..2813662) 1 NC_009633.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 2813662 5312869 Amet_2797 Alkaliphilus metalliredigens QYMF lipoprotein signal peptidase YP_001320606.1 2813219 R 293826 CDS YP_001320607.1 150390558 5312870 complement(2813889..2814563) 1 NC_009633.1 TIGRFAM: Sporulation protein YteA; KEGG: tte:TTE1572 DnaK suppressor protein; TraR/DksA family transcriptional regulator 2814563 5312870 Amet_2798 Alkaliphilus metalliredigens QYMF TraR/DksA family transcriptional regulator YP_001320607.1 2813889 R 293826 CDS YP_001320608.1 150390559 5312871 complement(2814840..2815535) 1 NC_009633.1 PFAM: purine or other phosphorylase, family 1; KEGG: fnu:FN1015 5'-methylthioadenosine nucleosidase; adenosylhomocysteine nucleosidase 2815535 5312871 Amet_2799 Alkaliphilus metalliredigens QYMF adenosylhomocysteine nucleosidase YP_001320608.1 2814840 R 293826 CDS YP_001320609.1 150390560 5312872 complement(2815699..2816160) 1 NC_009633.1 PFAM: DivIVA family protein; KEGG: tte:TTE1596 Cell division initiation protein; DivIVA family protein 2816160 5312872 Amet_2800 Alkaliphilus metalliredigens QYMF DivIVA family protein YP_001320609.1 2815699 R 293826 CDS YP_001320610.1 150390561 5312873 complement(2816175..2816963) 1 NC_009633.1 PFAM: RNA-binding S4 domain protein; KEGG: tte:TTE1597 hypothetical protein; RNA-binding S4 domain-containing protein 2816963 5312873 Amet_2801 Alkaliphilus metalliredigens QYMF RNA-binding S4 domain-containing protein YP_001320610.1 2816175 R 293826 CDS YP_001320611.1 150390562 5312874 complement(2816994..2817278) 1 NC_009633.1 PFAM: protein of unknown function YGGT; KEGG: mgm:Mmc1_3655 protein of unknown function YGGT; hypothetical protein 2817278 5312874 Amet_2802 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320611.1 2816994 R 293826 CDS YP_001320612.1 150390563 5312875 complement(2817294..2817740) 1 NC_009633.1 PFAM: protein of unknown function DUF552; KEGG: cth:Cthe_0791 protein of unknown function DUF552; hypothetical protein 2817740 5312875 Amet_2803 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320612.1 2817294 R 293826 CDS YP_001320613.1 150390564 5312876 complement(2817751..2818446) 1 NC_009633.1 PFAM: alanine racemase domain protein; KEGG: cth:Cthe_0792 protein of unknown function UPF0001; alanine racemase domain-containing protein 2818446 5312876 Amet_2804 Alkaliphilus metalliredigens QYMF alanine racemase domain-containing protein YP_001320613.1 2817751 R 293826 CDS YP_001320614.1 150390565 5312877 complement(2818463..2819725) 1 NC_009633.1 KEGG: tte:TTE1601 membrane-fusion protein; hypothetical protein 2819725 5312877 Amet_2805 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320614.1 2818463 R 293826 CDS YP_001320615.1 150390566 5312878 complement(2819940..2820323) 1 NC_009633.1 hypothetical protein 2820323 5312878 Amet_2806 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320615.1 2819940 R 293826 CDS YP_001320616.1 150390567 5312879 complement(2820404..2820571) 1 NC_009633.1 hypothetical protein 2820571 5312879 Amet_2807 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320616.1 2820404 R 293826 CDS YP_001320617.1 150390568 5312880 2821014..2822213 1 NC_009633.1 TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB3456 glycine betaine ABC transporter ATP-binding protein; glycine betaine/L-proline ABC transporter ATPase 2822213 5312880 Amet_2808 Alkaliphilus metalliredigens QYMF glycine betaine/L-proline ABC transporter ATPase YP_001320617.1 2821014 D 293826 CDS YP_001320618.1 150390569 5312881 2822203..2823066 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ctc:CTC02341 putative glycine-betaine binding permease protein; binding-protein-dependent transport system inner membrane protein 2823066 5312881 Amet_2809 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001320618.1 2822203 D 293826 CDS YP_001320619.1 150390570 5312882 2823076..2823945 1 NC_009633.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: aeh:Mlg_0734 response regulator receiver protein; glycine betaine ABC transporter substrate-binding protein 2823945 5312882 Amet_2810 Alkaliphilus metalliredigens QYMF glycine betaine ABC transporter substrate-binding protein YP_001320619.1 2823076 D 293826 CDS YP_001320620.1 150390571 5312883 complement(2824062..2825066) 1 NC_009633.1 hypothetical protein 2825066 5312883 Amet_2811 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320620.1 2824062 R 293826 CDS YP_001320621.1 150390572 5312884 complement(2825235..2826440) 1 NC_009633.1 PFAM: inner-membrane translocator; KEGG: mta:Moth_2020 inner-membrane translocator; monosaccharide-transporting ATPase 2826440 5312884 Amet_2812 Alkaliphilus metalliredigens QYMF monosaccharide-transporting ATPase YP_001320621.1 2825235 R 293826 CDS YP_001320622.1 150390573 5312885 complement(2826455..2828002) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_2021 ABC transporter related; ABC transporter-like protein 2828002 5312885 Amet_2813 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001320622.1 2826455 R 293826 CDS YP_001320623.1 150390574 5312886 complement(2828078..2829139) 1 NC_009633.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: mta:Moth_2022 periplasmic binding protein/LacI transcriptional regulator; monosaccharide-transporting ATPase 2829139 5312886 Amet_2814 Alkaliphilus metalliredigens QYMF monosaccharide-transporting ATPase YP_001320623.1 2828078 R 293826 CDS YP_001320624.1 150390575 5312887 complement(2829530..2830609) 1 NC_009633.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0289 Periplasmic sugar-binding proteins; monosaccharide-transporting ATPase 2830609 5312887 Amet_2815 Alkaliphilus metalliredigens QYMF monosaccharide-transporting ATPase YP_001320624.1 2829530 R 293826 CDS YP_001320625.1 150390576 5312888 complement(2830626..2832215) 1 NC_009633.1 PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: tte:TTE0288 CheY-like receiver domains; response regulator receiver protein 2832215 5312888 Amet_2816 Alkaliphilus metalliredigens QYMF response regulator receiver protein YP_001320625.1 2830626 R 293826 CDS YP_001320626.1 150390577 5312889 complement(2832208..2833719) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase internal region; KEGG: tte:TTE0287 predicted ATPase; histidine kinase internal subunit 2833719 5312889 Amet_2817 Alkaliphilus metalliredigens QYMF histidine kinase internal subunit YP_001320626.1 2832208 R 293826 CDS YP_001320627.1 150390578 5312890 complement(2833731..2834744) 1 NC_009633.1 KEGG: tte:TTE0286 periplasmic sugar-binding proteins; periplasmic sugar-binding protein 2834744 5312890 Amet_2818 Alkaliphilus metalliredigens QYMF periplasmic sugar-binding protein YP_001320627.1 2833731 R 293826 CDS YP_001320628.1 150390579 5312891 complement(2835062..2835964) 1 NC_009633.1 PFAM: TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ctc:CTC01770 conserved protein, tetratricopeptide repeat family protein; hypothetical protein 2835964 5312891 Amet_2819 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320628.1 2835062 R 293826 CDS YP_001320629.1 150390580 5312892 2836093..2836893 1 NC_009633.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sth:STH2737 glycerophosphodiester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 2836893 5312892 Amet_2820 Alkaliphilus metalliredigens QYMF glycerophosphoryl diester phosphodiesterase YP_001320629.1 2836093 D 293826 CDS YP_001320630.1 150390581 5312893 2837128..2837964 1 NC_009633.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 2837964 5312893 Amet_2821 Alkaliphilus metalliredigens QYMF S-adenosylmethionine decarboxylase YP_001320630.1 2837128 D 293826 CDS YP_001320631.1 150390582 5312894 complement(2838156..2840471) 1 NC_009633.1 PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cno:NT01CX_0220 negative regulator of genetic competence ClpC/MecB; ATPase 2840471 5312894 Amet_2822 Alkaliphilus metalliredigens QYMF ATPase YP_001320631.1 2838156 R 293826 CDS YP_001320632.1 150390583 5312895 complement(2840871..2841773) 1 NC_009633.1 PFAM: protein of unknown function DUF477; KEGG: tma:TM0962 hypothetical protein; hypothetical protein 2841773 5312895 Amet_2823 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320632.1 2840871 R 293826 CDS YP_001320633.1 150390584 5312896 complement(2841849..2842418) 1 NC_009633.1 PFAM: LemA family protein; KEGG: sat:SYN_00535 LemA family protein; LemA family protein 2842418 5312896 Amet_2824 Alkaliphilus metalliredigens QYMF LemA family protein YP_001320633.1 2841849 R 293826 CDS YP_001320634.1 150390585 5312897 complement(2842616..2843314) 1 NC_009633.1 PFAM: Peptidoglycan-binding LysM; KEGG: mta:Moth_1271 peptidoglycan-binding LysM; peptidoglycan-binding protein LysM 2843314 5312897 Amet_2825 Alkaliphilus metalliredigens QYMF peptidoglycan-binding protein LysM YP_001320634.1 2842616 R 293826 CDS YP_001320635.1 150390586 5312898 complement(2843594..2844478) 1 NC_009633.1 PFAM: nitroreductase; KEGG: dsy:DSY1470 hypothetical protein; nitroreductase 2844478 5312898 Amet_2826 Alkaliphilus metalliredigens QYMF nitroreductase YP_001320635.1 2843594 R 293826 CDS YP_001320636.1 150390587 5312899 complement(2844513..2844950) 1 NC_009633.1 hypothetical protein 2844950 5312899 Amet_2827 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320636.1 2844513 R 293826 CDS YP_001320637.1 150390588 5312900 complement(2845207..2846469) 1 NC_009633.1 PFAM: major facilitator superfamily MFS_1; KEGG: pac:PPA1089 putative oxalate/formate-specific permease; major facilitator superfamily transporter 2846469 5312900 Amet_2828 Alkaliphilus metalliredigens QYMF major facilitator superfamily transporter YP_001320637.1 2845207 R 293826 CDS YP_001320638.1 150390589 5312901 complement(2846807..2846920) 1 NC_009633.1 hypothetical protein 2846920 5312901 Amet_2829 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320638.1 2846807 R 293826 CDS YP_001320639.1 150390590 5312902 complement(2847092..2847229) 1 NC_009633.1 hypothetical protein 2847229 5312902 Amet_2830 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320639.1 2847092 R 293826 CDS YP_001320640.1 150390591 5312904 complement(2847661..2848581) 1 NC_009633.1 hypothetical protein 2848581 5312904 Amet_2831 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320640.1 2847661 R 293826 CDS YP_001320641.1 150390592 5312905 complement(2848583..2848921) 1 NC_009633.1 KEGG: swo:Swol_1305 hypothetical protein; hypothetical protein 2848921 5312905 Amet_2832 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320641.1 2848583 R 293826 CDS YP_001320642.1 150390593 5312906 complement(2848980..2849282) 1 NC_009633.1 hypothetical protein 2849282 5312906 Amet_2833 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320642.1 2848980 R 293826 CDS YP_001320643.1 150390594 5312907 complement(2849419..2849790) 1 NC_009633.1 hypothetical protein 2849790 5312907 Amet_2834 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320643.1 2849419 R 293826 CDS YP_001320644.1 150390595 5312908 complement(2849811..2850569) 1 NC_009633.1 KEGG: cac:CAC0060 predicted membrane protein; hypothetical protein 2850569 5312908 Amet_2835 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320644.1 2849811 R 293826 CDS YP_001320645.1 150390596 5312909 complement(2851224..2852552) 1 NC_009633.1 PFAM: phage portal protein, SPP1; KEGG: swo:Swol_1309 hypothetical protein; phage portal protein, SPP1 2852552 5312909 Amet_2836 Alkaliphilus metalliredigens QYMF phage portal protein, SPP1 YP_001320645.1 2851224 R 293826 CDS YP_001320646.1 150390597 5312910 complement(2852610..2854169) 1 NC_009633.1 KEGG: swo:Swol_1310 hypothetical protein; hypothetical protein 2854169 5312910 Amet_2837 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320646.1 2852610 R 293826 CDS YP_001320647.1 150390598 5312911 complement(2854159..2854551) 1 NC_009633.1 hypothetical protein 2854551 5312911 Amet_2838 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320647.1 2854159 R 293826 CDS YP_001320648.1 150390599 5312912 complement(2854552..2854671) 1 NC_009633.1 hypothetical protein 2854671 5312912 Amet_2839 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320648.1 2854552 R 293826 CDS YP_001320649.1 150390600 5312913 complement(2855060..2856772) 1 NC_009633.1 hypothetical protein 2856772 5312913 Amet_2840 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320649.1 2855060 R 293826 CDS YP_001320650.1 150390601 5312914 complement(2856784..2856951) 1 NC_009633.1 hypothetical protein 2856951 5312914 Amet_2841 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320650.1 2856784 R 293826 CDS YP_001320651.1 150390602 5312915 complement(2856996..2857232) 1 NC_009633.1 hypothetical protein 2857232 5312915 Amet_2842 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320651.1 2856996 R 293826 CDS YP_001320652.1 150390603 5312916 complement(2857229..2857705) 1 NC_009633.1 KEGG: swo:Swol_1313 hypothetical protein; hypothetical protein 2857705 5312916 Amet_2843 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320652.1 2857229 R 293826 CDS YP_001320653.1 150390604 5312917 complement(2857768..2857977) 1 NC_009633.1 hypothetical protein 2857977 5312917 Amet_2844 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320653.1 2857768 R 293826 CDS YP_001320654.1 150390605 5312918 complement(2857981..2858724) 1 NC_009633.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein; IstB ATP binding domain-containing protein 2858724 5312918 Amet_2845 Alkaliphilus metalliredigens QYMF IstB ATP binding domain-containing protein YP_001320654.1 2857981 R 293826 CDS YP_001320655.1 150390606 5312919 complement(2858712..2860265) 1 NC_009633.1 PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22); integrase catalytic subunit 2860265 5312919 Amet_2846 Alkaliphilus metalliredigens QYMF integrase catalytic subunit YP_001320655.1 2858712 R 293826 CDS YP_001320656.1 150390607 5312920 complement(2860335..2860814) 1 NC_009633.1 KEGG: swo:Swol_1313 hypothetical protein; hypothetical protein 2860814 5312920 Amet_2847 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320656.1 2860335 R 293826 CDS YP_001320657.1 150390608 5312921 complement(2860914..2861057) 1 NC_009633.1 hypothetical protein 2861057 5312921 Amet_2848 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320657.1 2860914 R 293826 CDS YP_001320658.1 150390609 5312922 complement(2861232..2862065) 1 NC_009633.1 KEGG: spb:M28_Spy1244 major head protein; hypothetical protein 2862065 5312922 Amet_2849 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320658.1 2861232 R 293826 CDS YP_001320659.1 150390610 5312923 complement(2862179..2862583) 1 NC_009633.1 hypothetical protein 2862583 5312923 Amet_2850 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320659.1 2862179 R 293826 CDS YP_001320660.1 150390611 5312924 complement(2862749..2862925) 1 NC_009633.1 hypothetical protein 2862925 5312924 Amet_2851 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320660.1 2862749 R 293826 CDS YP_001320661.1 150390612 5312925 complement(2863542..2866196) 1 NC_009633.1 KEGG: cac:CAC1139 phage related protein, YonO B.subtilis homolog; phage-like protein 2866196 5312925 Amet_2852 Alkaliphilus metalliredigens QYMF phage-like protein YP_001320661.1 2863542 R 293826 CDS YP_001320662.1 150390613 5312926 complement(2866664..2867629) 1 NC_009633.1 PFAM: phage integrase family protein; KEGG: gka:GK2913 integrase/recombinase; phage integrase family protein 2867629 5312926 Amet_2853 Alkaliphilus metalliredigens QYMF phage integrase family protein YP_001320662.1 2866664 R 293826 CDS YP_001320663.1 150390614 5312928 complement(2868023..2869501) 1 NC_009633.1 TIGRFAM: Sporulation stage IV, protein A; KEGG: cth:Cthe_1021 stage IV sporulation protein A; sporulation stage IV, protein A 2869501 5312928 Amet_2854 Alkaliphilus metalliredigens QYMF sporulation stage IV, protein A YP_001320663.1 2868023 R 293826 CDS YP_001320664.1 150390615 5312929 complement(2869788..2870819) 1 NC_009633.1 PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: mta:Moth_1320 NAD-dependent glycerol-3-phosphate dehydrogenase-like; glycerol-3-phosphate dehydrogenase (NAD(P)(+)) 2870819 5312929 Amet_2855 Alkaliphilus metalliredigens QYMF glycerol-3-phosphate dehydrogenase (NAD(P)(+)) YP_001320664.1 2869788 R 293826 CDS YP_001320665.1 150390616 5312930 complement(2870837..2871424) 1 NC_009633.1 PFAM: protein of unknown function DUF205; KEGG: tte:TTE1618 hypothetical protein; hypothetical protein 2871424 5312930 Amet_2856 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320665.1 2870837 R 293826 CDS YP_001320666.1 150390617 5312931 complement(2871428..2872750) 1 NC_009633.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2872750 engA 5312931 engA Alkaliphilus metalliredigens QYMF GTP-binding protein EngA YP_001320666.1 2871428 R 293826 CDS YP_001320667.1 150390618 5312932 complement(2872756..2874102) 1 NC_009633.1 PFAM: protein of unknown function DUF512; KEGG: cth:Cthe_1025 protein of unknown function DUF512; response regulator receiver protein 2874102 5312932 Amet_2858 Alkaliphilus metalliredigens QYMF response regulator receiver protein YP_001320667.1 2872756 R 293826 CDS YP_001320668.1 150390619 5312933 complement(2874232..2874690) 1 NC_009633.1 KEGG: tte:TTE1621 hypothetical protein; hypothetical protein 2874690 5312933 Amet_2859 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320668.1 2874232 R 293826 CDS YP_001320669.1 150390620 5312934 complement(2874687..2875022) 1 NC_009633.1 hypothetical protein 2875022 5312934 Amet_2860 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320669.1 2874687 R 293826 CDS YP_001320670.1 150390621 5312935 complement(2875036..2875230) 1 NC_009633.1 KEGG: swo:Swol_1337 hypothetical protein; hypothetical protein 2875230 5312935 Amet_2861 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320670.1 2875036 R 293826 CDS YP_001320671.1 150390622 5312936 complement(2875243..2876160) 1 NC_009633.1 KEGG: tte:TTE1624 hypothetical protein; hypothetical protein 2876160 5312936 Amet_2862 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320671.1 2875243 R 293826 CDS YP_001320672.1 150390623 5312937 complement(2876172..2877374) 1 NC_009633.1 PFAM: Stage II sporulation P family protein; KEGG: tte:TTE1625 stage II sporulation protein P; stage II sporulation P family protein 2877374 5312937 Amet_2863 Alkaliphilus metalliredigens QYMF stage II sporulation P family protein YP_001320672.1 2876172 R 293826 CDS YP_001320673.1 150390624 5312938 complement(2877364..2878122) 1 NC_009633.1 KEGG: tte:TTE1626 hypothetical protein; hypothetical protein 2878122 5312938 Amet_2864 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320673.1 2877364 R 293826 CDS YP_001320674.1 150390625 5312939 complement(2878275..2880041) 1 NC_009633.1 KEGG: cth:Cthe_1393 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 2880041 5312939 Amet_2865 Alkaliphilus metalliredigens QYMF multi-sensor signal transduction histidine kinase YP_001320674.1 2878275 R 293826 CDS YP_001320675.1 150390626 5312940 complement(2880050..2880739) 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpf:CPF_0623 DNA-binding response regulator; two component transcriptional regulator 2880739 5312940 Amet_2866 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001320675.1 2880050 R 293826 CDS YP_001320676.1 150390627 5312941 complement(2880755..2881552) 1 NC_009633.1 PFAM: protein of unknown function DUF152; KEGG: tte:TTE0179 conserved hypothetical protein; hypothetical protein 2881552 5312941 Amet_2867 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320676.1 2880755 R 293826 CDS YP_001320677.1 150390628 5312942 complement(2881651..2882118) 1 NC_009633.1 PFAM: ATP-cone domain protein; KEGG: cth:Cthe_0450 ribonucleotide reductase regulator NrdR-like protein; transcriptional regulator NrdR 2882118 nrdR 5312942 nrdR Alkaliphilus metalliredigens QYMF transcriptional regulator NrdR YP_001320677.1 2881651 R 293826 CDS YP_001320678.1 150390629 5312943 complement(2882204..2882500) 1 NC_009633.1 TIGRFAM: Sporulation protein YlmC/YmxH; PFAM: PRC-barrel domain protein; KEGG: cth:Cthe_0449 hypothetical protein; sporulation protein YlmC/YmxH 2882500 5312943 Amet_2869 Alkaliphilus metalliredigens QYMF sporulation protein YlmC/YmxH YP_001320678.1 2882204 R 293826 CDS YP_001320679.1 150390630 5312944 complement(2882672..2883445) 1 NC_009633.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin; sporulation sigma factor SigG 2883445 5312944 Amet_2870 Alkaliphilus metalliredigens QYMF sporulation sigma factor SigG YP_001320679.1 2882672 R 293826 CDS YP_001320680.1 150390631 5312945 complement(2883542..2884276) 1 NC_009633.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; sporulation sigma factor SigE 2884276 5312945 Amet_2871 Alkaliphilus metalliredigens QYMF sporulation sigma factor SigE YP_001320680.1 2883542 R 293826 CDS YP_001320681.1 150390632 5312946 complement(2884309..2885199) 1 NC_009633.1 PFAM: peptidase U4, sporulation factor SpoIIGA; KEGG: cth:Cthe_0446 peptidase U4, sporulation factor SpoIIGA; peptidase U4, sporulation factor SpoIIGA 2885199 5312946 Amet_2872 Alkaliphilus metalliredigens QYMF peptidase U4, sporulation factor SpoIIGA YP_001320681.1 2884309 R 293826 CDS YP_001320682.1 150390633 5312947 complement(2885489..2886583) 1 NC_009633.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: cth:Cthe_0445 cell division protein FtsZ; cell division protein FtsZ 2886583 5312947 Amet_2873 Alkaliphilus metalliredigens QYMF cell division protein FtsZ YP_001320682.1 2885489 R 293826 CDS YP_001320683.1 150390634 5312948 complement(2886783..2887139) 1 NC_009633.1 PFAM: protein of unknown function DUF1290; KEGG: tte:TTE1641 small basic protein; hypothetical protein 2887139 5312948 Amet_2874 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320683.1 2886783 R 293826 CDS YP_001320684.1 150390635 5312949 complement(2887143..2887865) 1 NC_009633.1 PFAM: protein of unknown function DUF881; KEGG: tte:TTE1642 hypothetical protein; hypothetical protein 2887865 5312949 Amet_2875 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320684.1 2887143 R 293826 CDS YP_001320685.1 150390636 5312950 complement(2887891..2888628) 1 NC_009633.1 PFAM: protein of unknown function DUF881; KEGG: tte:TTE1642 hypothetical protein; hypothetical protein 2888628 5312950 Amet_2876 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320685.1 2887891 R 293826 CDS YP_001320686.1 150390637 5312951 complement(2888628..2889416) 1 NC_009633.1 PFAM: Polypeptide-transport-associated protein domain protein, FtsQ-type; KEGG: tte:TTE1643 cell division septal protein; polypeptide-transport-associated domain-containing protein 2889416 5312951 Amet_2877 Alkaliphilus metalliredigens QYMF polypeptide-transport-associated domain-containing protein YP_001320686.1 2888628 R 293826 CDS YP_001320687.1 150390638 5312952 complement(2889512..2890765) 1 NC_009633.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2890765 5312952 Amet_2878 Alkaliphilus metalliredigens QYMF UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001320687.1 2889512 R 293826 CDS YP_001320688.1 150390639 5312953 complement(2890890..2891990) 1 NC_009633.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 2891990 murG 5312953 murG Alkaliphilus metalliredigens QYMF undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001320688.1 2890890 R 293826 CDS YP_001320689.1 150390640 5312954 complement(2891996..2893114) 1 NC_009633.1 TIGRFAM: cell division protein FtsW; stage V sporulation protein E; PFAM: cell cycle protein; KEGG: tte:TTE1646 Bacterial cell division membrane protein; stage V sporulation protein E 2893114 5312954 Amet_2880 Alkaliphilus metalliredigens QYMF stage V sporulation protein E YP_001320689.1 2891996 R 293826 CDS YP_001320690.1 150390641 5312955 complement(2893116..2894483) 1 NC_009633.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 2894483 murD 5312955 murD Alkaliphilus metalliredigens QYMF UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001320690.1 2893116 R 293826 CDS YP_001320691.1 150390642 5312956 complement(2894500..2895495) 1 NC_009633.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 2895495 mraY 5312956 mraY Alkaliphilus metalliredigens QYMF phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001320691.1 2894500 R 293826 CDS YP_001320692.1 150390643 5312957 complement(2895504..2896895) 1 NC_009633.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; KEGG: cth:Cthe_0977 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 2896895 5312957 Amet_2883 Alkaliphilus metalliredigens QYMF UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase YP_001320692.1 2895504 R 293826 CDS YP_001320693.1 150390644 5312958 complement(2896873..2898357) 1 NC_009633.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 2898357 murE 5312958 murE Alkaliphilus metalliredigens QYMF UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001320693.1 2896873 R 293826 CDS YP_001320694.1 150390645 5312959 complement(2898499..2900670) 1 NC_009633.1 PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA domain containing protein; KEGG: tte:TTE1651 Cell division protein FtsI/penicillin-binding protein 2; peptidoglycan glycosyltransferase 2900670 5312959 Amet_2885 Alkaliphilus metalliredigens QYMF peptidoglycan glycosyltransferase YP_001320694.1 2898499 R 293826 CDS YP_001320695.1 150390646 5312960 complement(2900685..2901182) 1 NC_009633.1 KEGG: tte:TTE1652 hypothetical protein; hypothetical protein 2901182 5312960 Amet_2886 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320695.1 2900685 R 293826 CDS YP_001320696.1 150390647 5312961 complement(2901214..2902149) 1 NC_009633.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: ctc:CTC01635 S-adenosyl-methyltransferase mraW; S-adenosyl-methyltransferase MraW 2902149 mraW 5312961 mraW Alkaliphilus metalliredigens QYMF S-adenosyl-methyltransferase MraW YP_001320696.1 2901214 R 293826 CDS YP_001320697.1 150390648 5312962 complement(2902177..2902608) 1 NC_009633.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 2902608 5312962 Amet_2888 Alkaliphilus metalliredigens QYMF cell division protein MraZ YP_001320697.1 2902177 R 293826 CDS YP_001320698.1 150390649 5312963 complement(2902802..2902957) 1 NC_009633.1 hypothetical protein 2902957 5312963 Amet_2889 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320698.1 2902802 R 293826 CDS YP_001320699.1 150390650 5312964 complement(2903098..2903835) 1 NC_009633.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 2903835 5312964 Amet_2890 Alkaliphilus metalliredigens QYMF prolipoprotein diacylglyceryl transferase YP_001320699.1 2903098 R 293826 CDS YP_001320700.1 150390651 5312965 complement(2903934..2905223) 1 NC_009633.1 PFAM: peptidase M16 domain protein; KEGG: tte:TTE1655 predicted Zn-dependent peptidase; peptidase M16 domain-containing protein 2905223 5312965 Amet_2891 Alkaliphilus metalliredigens QYMF peptidase M16 domain-containing protein YP_001320700.1 2903934 R 293826 CDS YP_001320701.1 150390652 5312966 complement(2905242..2906504) 1 NC_009633.1 PFAM: peptidase M16 domain protein; KEGG: tte:TTE1656 predicted Zn-dependent peptidase; peptidase M16 domain-containing protein 2906504 5312966 Amet_2892 Alkaliphilus metalliredigens QYMF peptidase M16 domain-containing protein YP_001320701.1 2905242 R 293826 CDS YP_001320702.1 150390653 5312967 complement(2906625..2907797) 1 NC_009633.1 hypothetical protein 2907797 5312967 Amet_2893 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320702.1 2906625 R 293826 CDS YP_001320703.1 150390654 5312968 complement(2908001..2908594) 1 NC_009633.1 TIGRFAM: Sporulation lipoprotein YhcN/YlaJ; KEGG: ctc:CTC01534 hypothetical protein; sporulation lipoprotein YhcN/YlaJ 2908594 5312968 Amet_2894 Alkaliphilus metalliredigens QYMF sporulation lipoprotein YhcN/YlaJ YP_001320703.1 2908001 R 293826 CDS YP_001320704.1 150390655 5312969 complement(2908657..2908938) 1 NC_009633.1 hypothetical protein 2908938 5312969 Amet_2895 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320704.1 2908657 R 293826 CDS YP_001320705.1 150390656 5312970 2909140..2910234 1 NC_009633.1 TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein, HSR1-related; Protein of unknown function DUF933; KEGG: cth:Cthe_0877 GTP-binding protein YchF; GTP-binding protein YchF 2910234 5312970 Amet_2896 Alkaliphilus metalliredigens QYMF GTP-binding protein YchF YP_001320705.1 2909140 D 293826 CDS YP_001320706.1 150390657 5312971 complement(2910347..2911021) 1 NC_009633.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 2911021 5312971 Amet_2897 Alkaliphilus metalliredigens QYMF deoxyribose-phosphate aldolase YP_001320706.1 2910347 R 293826 CDS YP_001320707.1 150390658 5312972 complement(2911038..2911616) 1 NC_009633.1 PFAM: Propanediol utilization protein; KEGG: dsy:DSY2876 hypothetical protein; propanediol utilization protein 2911616 5312972 Amet_2898 Alkaliphilus metalliredigens QYMF propanediol utilization protein YP_001320707.1 2911038 R 293826 CDS YP_001320708.1 150390659 5312973 complement(2911726..2913534) 1 NC_009633.1 PFAM: GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: lbl:LBL_1463 serine phosphatase RsbU, regulator of sigma subunit; protein serine phosphatase with GAF(s) sensor(s) 2913534 5312973 Amet_2899 Alkaliphilus metalliredigens QYMF protein serine phosphatase with GAF(s) sensor(s) YP_001320708.1 2911726 R 293826 CDS YP_001320709.1 150390660 5312974 complement(2913555..2914562) 1 NC_009633.1 hypothetical protein 2914562 5312974 Amet_2900 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320709.1 2913555 R 293826 CDS YP_001320710.1 150390661 5312975 complement(2914683..2914946) 1 NC_009633.1 hypothetical protein 2914946 5312975 Amet_2901 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320710.1 2914683 R 293826 CDS YP_001320711.1 150390662 5312976 complement(2915033..2915200) 1 NC_009633.1 hypothetical protein 2915200 5312976 Amet_2902 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320711.1 2915033 R 293826 CDS YP_001320712.1 150390663 5312977 complement(2915279..2915818) 1 NC_009633.1 TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: tte:TTE2394 hypoxanthine-guanine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 2915818 5312977 Amet_2903 Alkaliphilus metalliredigens QYMF hypoxanthine phosphoribosyltransferase YP_001320712.1 2915279 R 293826 CDS YP_001320713.1 150390664 5312978 complement(2915918..2916448) 1 NC_009633.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: bat:BAS1388 ATP:cob(I)alamin adenosyltransferase, putative; ATP--cobalamin adenosyltransferase 2916448 5312978 Amet_2904 Alkaliphilus metalliredigens QYMF ATP--cobalamin adenosyltransferase YP_001320713.1 2915918 R 293826 CDS YP_001320714.1 150390665 5312979 complement(2916693..2917664) 1 NC_009633.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: fnu:FN0400 dipeptide transport ATP-binding protein dppF; oligopeptide/dipeptide ABC transporter ATPase 2917664 5312979 Amet_2905 Alkaliphilus metalliredigens QYMF oligopeptide/dipeptide ABC transporter ATPase YP_001320714.1 2916693 R 293826 CDS YP_001320715.1 150390666 5312980 complement(2917687..2918670) 1 NC_009633.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: fnu:FN0399 dipeptide transport ATP-binding protein dppD; oligopeptide/dipeptide ABC transporter ATPase 2918670 5312980 Amet_2906 Alkaliphilus metalliredigens QYMF oligopeptide/dipeptide ABC transporter ATPase YP_001320715.1 2917687 R 293826 CDS YP_001320716.1 150390667 5312981 complement(2918698..2919612) 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN0398 dipeptide transport system permease protein dppC; binding-protein-dependent transport system inner membrane protein 2919612 5312981 Amet_2907 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001320716.1 2918698 R 293826 CDS YP_001320717.1 150390668 5312982 complement(2919643..2920572) 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN0397 dipeptide transport system permease protein dppB; nickel-transporting ATPase 2920572 5312982 Amet_2908 Alkaliphilus metalliredigens QYMF nickel-transporting ATPase YP_001320717.1 2919643 R 293826 CDS YP_001320718.1 150390669 5312983 complement(2920701..2922266) 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 5; KEGG: fnu:FN0396 dipeptide-binding protein; extracellular solute-binding protein 2922266 5312983 Amet_2909 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001320718.1 2920701 R 293826 CDS YP_001320719.1 150390670 5312984 complement(2922822..2923055) 1 NC_009633.1 hypothetical protein 2923055 5312984 Amet_2910 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320719.1 2922822 R 293826 CDS YP_001320720.1 150390671 5312985 complement(2923103..2924101) 1 NC_009633.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: cpr:CPR_2254 oligopeptide ABC transporter, ATPase component; oligopeptide/dipeptide ABC transporter ATPase 2924101 5312985 Amet_2911 Alkaliphilus metalliredigens QYMF oligopeptide/dipeptide ABC transporter ATPase YP_001320720.1 2923103 R 293826 CDS YP_001320721.1 150390672 5312986 complement(2924102..2925091) 1 NC_009633.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: sth:STH2824 oligopeptide ABC transporter ATP-binding protein; oligopeptide/dipeptide ABC transporter ATPase 2925091 5312986 Amet_2912 Alkaliphilus metalliredigens QYMF oligopeptide/dipeptide ABC transporter ATPase YP_001320721.1 2924102 R 293826 CDS YP_001320722.1 150390673 5312987 complement(2925108..2926019) 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_2256 oligopeptide ABC transporter, permease component; binding-protein-dependent transport system inner membrane protein 2926019 5312987 Amet_2913 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001320722.1 2925108 R 293826 CDS YP_001320723.1 150390674 5312988 complement(2926033..2926998) 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2554 oligopeptide/dipeptide ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2926998 5312988 Amet_2914 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001320723.1 2926033 R 293826 CDS YP_001320724.1 150390675 5312989 complement(2927085..2928785) 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 5; KEGG: cpr:CPR_2258 bacterial extracellular solute-binding proteins, family 5 superfamily; extracellular solute-binding protein 2928785 5312989 Amet_2915 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001320724.1 2927085 R 293826 CDS YP_001320725.1 150390676 5312990 2929341..2929952 1 NC_009633.1 PFAM: NUDIX hydrolase; KEGG: ctc:CTC00982 phosphohydrolase (MutT family protein); NUDIX hydrolase 2929952 5312990 Amet_2916 Alkaliphilus metalliredigens QYMF NUDIX hydrolase YP_001320725.1 2929341 D 293826 CDS YP_001320726.1 150390677 5312991 complement(2929978..2930496) 1 NC_009633.1 hypothetical protein 2930496 5312991 Amet_2917 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320726.1 2929978 R 293826 CDS YP_001320727.1 150390678 5312992 complement(2930524..2931357) 1 NC_009633.1 PFAM: cytochrome c assembly protein; KEGG: mta:Moth_2200 cytochrome c assembly protein; cytochrome c assembly protein 2931357 5312992 Amet_2918 Alkaliphilus metalliredigens QYMF cytochrome c assembly protein YP_001320727.1 2930524 R 293826 CDS YP_001320728.1 150390679 5312993 complement(2931368..2932648) 1 NC_009633.1 KEGG: mta:Moth_2199 ResB-like; ResB protein required for cytochrome c biosynthesis-like protein 2932648 5312993 Amet_2919 Alkaliphilus metalliredigens QYMF ResB protein required for cytochrome c biosynthesis-like protein YP_001320728.1 2931368 R 293826 CDS YP_001320729.1 150390680 5312994 complement(2932850..2934127) 1 NC_009633.1 PFAM: cytochrome c552; KEGG: dsy:DSY2472 cytochrome c nitrite reductase catalytic subunit NrfA; nitrite reductase 2934127 5312994 Amet_2920 Alkaliphilus metalliredigens QYMF nitrite reductase YP_001320729.1 2932850 R 293826 CDS YP_001320730.1 150390681 5312995 2934345..2936057 1 NC_009633.1 PFAM: amine oxidase; KEGG: ter:Tery_1366 amine oxidase; amine oxidase 2936057 5312995 Amet_2921 Alkaliphilus metalliredigens QYMF amine oxidase YP_001320730.1 2934345 D 293826 CDS YP_001320731.1 150390682 5312996 complement(2936224..2937111) 1 NC_009633.1 PFAM: Acetamidase/Formamidase; KEGG: bha:BH0025 acetamidase; acetamidase/formamidase 2937111 5312996 Amet_2922 Alkaliphilus metalliredigens QYMF acetamidase/formamidase YP_001320731.1 2936224 R 293826 CDS YP_001320732.1 150390683 5312997 complement(2937148..2938905) 1 NC_009633.1 KEGG: dsy:DSY0955 hypothetical protein; hypothetical protein 2938905 5312997 Amet_2923 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320732.1 2937148 R 293826 CDS YP_001320733.1 150390684 5312998 2939009..2939575 1 NC_009633.1 hypothetical protein 2939575 5312998 Amet_2924 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320733.1 2939009 D 293826 CDS YP_001320734.1 150390685 5312999 complement(2939724..2941748) 1 NC_009633.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; SMART: PAS domain containing protein; KEGG: cth:Cthe_0408 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 2941748 5312999 Amet_2925 Alkaliphilus metalliredigens QYMF PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001320734.1 2939724 R 293826 CDS YP_001320735.1 150390686 5313000 complement(2942561..2944711) 1 NC_009633.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: dsy:DSY1201 hypothetical protein; diguanylate cyclase/phosphodiesterase 2944711 5313000 Amet_2926 Alkaliphilus metalliredigens QYMF diguanylate cyclase/phosphodiesterase YP_001320735.1 2942561 R 293826 CDS YP_001320736.1 150390687 5313001 2945143..2945706 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: dsy:DSY4418 hypothetical protein; ECF subfamily RNA polymerase sigma-24 factor 2945706 5313001 Amet_2927 Alkaliphilus metalliredigens QYMF ECF subfamily RNA polymerase sigma-24 factor YP_001320736.1 2945143 D 293826 CDS YP_001320737.1 150390688 5313002 2945709..2946164 1 NC_009633.1 KEGG: dsy:DSY4419 hypothetical protein; hypothetical protein 2946164 5313002 Amet_2928 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320737.1 2945709 D 293826 CDS YP_001320738.1 150390689 5313003 2946161..2946862 1 NC_009633.1 KEGG: dsy:DSY4420 hypothetical protein; hypothetical protein 2946862 5313003 Amet_2929 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320738.1 2946161 D 293826 CDS YP_001320739.1 150390690 5313004 2946852..2947229 1 NC_009633.1 KEGG: dsy:DSY4421 hypothetical protein; hypothetical protein 2947229 5313004 Amet_2930 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320739.1 2946852 D 293826 CDS YP_001320740.1 150390691 5313005 complement(2947329..2948093) 1 NC_009633.1 PFAM: regulatory protein, MerR; TipAS antibiotic-recognition domain protein; Transcription regulator MerR, DNA binding; KEGG: dsy:DSY4240 hypothetical protein; MerR family transcriptional regulator 2948093 5313005 Amet_2931 Alkaliphilus metalliredigens QYMF MerR family transcriptional regulator YP_001320740.1 2947329 R 293826 CDS YP_001320741.1 150390692 5313006 complement(2948249..2949835) 1 NC_009633.1 KEGG: hypothetical membrane protein; K02040 phosphate transport system substrate-binding protein; phosphate ABC transporter substrate-binding protein 2949835 5313006 Amet_2932 Alkaliphilus metalliredigens QYMF phosphate ABC transporter substrate-binding protein YP_001320741.1 2948249 R 293826 CDS YP_001320742.1 150390693 5313007 complement(2949922..2950305) 1 NC_009633.1 PFAM: NUDIX hydrolase; KEGG: chy:CHY_1339 mutator MutT protein; NUDIX hydrolase 2950305 5313007 Amet_2933 Alkaliphilus metalliredigens QYMF NUDIX hydrolase YP_001320742.1 2949922 R 293826 CDS YP_001320743.1 150390694 5313008 complement(2950719..2952707) 1 NC_009633.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY3380 hypothetical protein; methyl-accepting chemotaxis sensory transducer 2952707 5313008 Amet_2934 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001320743.1 2950719 R 293826 CDS YP_001320744.1 150390695 5313009 2953125..2954147 1 NC_009633.1 PFAM: peptidase S41; KEGG: cth:Cthe_0744 copper amine oxidase-like protein; peptidase S41 2954147 5313009 Amet_2935 Alkaliphilus metalliredigens QYMF peptidase S41 YP_001320744.1 2953125 D 293826 CDS YP_001320745.1 150390696 5313010 complement(2954431..2955084) 1 NC_009633.1 KEGG: dsy:DSY3817 hypothetical protein; hypothetical protein 2955084 5313010 Amet_2936 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320745.1 2954431 R 293826 CDS YP_001320746.1 150390697 5313011 complement(2955318..2956358) 1 NC_009633.1 PFAM: putative ammonia monooxygenase; KEGG: dsy:DSY3458 hypothetical protein; putative ammonia monooxygenase 2956358 5313011 Amet_2937 Alkaliphilus metalliredigens QYMF putative ammonia monooxygenase YP_001320746.1 2955318 R 293826 CDS YP_001320747.1 150390698 5313012 complement(2956376..2957353) 1 NC_009633.1 PFAM: beta-lactamase domain protein; KEGG: ctc:CTC00790 zinc metallohydrolase; beta-lactamase domain-containing protein 2957353 5313012 Amet_2938 Alkaliphilus metalliredigens QYMF beta-lactamase domain-containing protein YP_001320747.1 2956376 R 293826 CDS YP_001320748.1 150390699 5313013 2957799..2959010 1 NC_009633.1 hypothetical protein 2959010 5313013 Amet_2939 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320748.1 2957799 D 293826 CDS YP_001320749.1 150390700 5313014 complement(2959144..2959764) 1 NC_009633.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: btl:BALH_1994 phosphoglycolate phosphatase; HAD family hydrolase 2959764 5313014 Amet_2940 Alkaliphilus metalliredigens QYMF HAD family hydrolase YP_001320749.1 2959144 R 293826 CDS YP_001320750.1 150390701 5313015 complement(2960037..2961203) 1 NC_009633.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: lmf:LMOf2365_0567 carboxypeptidase, putative; amidohydrolase 2961203 5313015 Amet_2941 Alkaliphilus metalliredigens QYMF amidohydrolase YP_001320750.1 2960037 R 293826 CDS YP_001320751.1 150390702 5313016 complement(2961316..2962506) 1 NC_009633.1 KEGG: lwe:lwe0497 membrane protein; membrane protein 2962506 5313016 Amet_2942 Alkaliphilus metalliredigens QYMF membrane protein YP_001320751.1 2961316 R 293826 CDS YP_001320752.1 150390703 5313017 complement(2962881..2964872) 1 NC_009633.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC01857 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2964872 5313017 Amet_2943 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001320752.1 2962881 R 293826 CDS YP_001320753.1 150390704 5313018 complement(2965764..2967659) 1 NC_009633.1 PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: dsy:DSY2035 hypothetical protein; alpha amylase 2967659 5313018 Amet_2944 Alkaliphilus metalliredigens QYMF alpha amylase YP_001320753.1 2965764 R 293826 CDS YP_001320754.1 150390705 5313019 complement(2967700..2970183) 1 NC_009633.1 TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35; KEGG: cno:NT01CX_1243 glycogen phosphorylase; glycogen/starch/alpha-glucan phosphorylase 2970183 5313019 Amet_2945 Alkaliphilus metalliredigens QYMF glycogen/starch/alpha-glucan phosphorylase YP_001320754.1 2967700 R 293826 CDS YP_001320755.1 150390706 5313020 complement(2970214..2971641) 1 NC_009633.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: bar:GBAA5120 glycogen synthase; glycogen/starch synthase 2971641 5313020 Amet_2946 Alkaliphilus metalliredigens QYMF glycogen/starch synthase YP_001320755.1 2970214 R 293826 CDS YP_001320756.1 150390707 5313021 complement(2971654..2972769) 1 NC_009633.1 TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit; PFAM: Nucleotidyl transferase; KEGG: cth:Cthe_3167 glucose-1-phosphate adenylyltransferase, GlgD subunit; glucose-1-phosphate adenylyltransferase 2972769 5313021 Amet_2947 Alkaliphilus metalliredigens QYMF glucose-1-phosphate adenylyltransferase YP_001320756.1 2971654 R 293826 CDS YP_001320757.1 150390708 5313022 complement(2972807..2973922) 1 NC_009633.1 TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cno:NT01CX_0723 glucose-1-phosphate adenylyltransferase; glucose-1-phosphate adenylyltransferase 2973922 5313022 Amet_2948 Alkaliphilus metalliredigens QYMF glucose-1-phosphate adenylyltransferase YP_001320757.1 2972807 R 293826 CDS YP_001320758.1 150390709 5313023 complement(2973933..2975828) 1 NC_009633.1 TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; alpha amylase, C-terminal all-beta; SMART: alpha amylase, catalytic sub domain; KEGG: cth:Cthe_2191 1,4-alpha-glucan branching enzyme; 1,4-alpha-glucan branching protein 2975828 5313023 Amet_2949 Alkaliphilus metalliredigens QYMF 1,4-alpha-glucan branching protein YP_001320758.1 2973933 R 293826 CDS YP_001320759.1 150390710 5313024 complement(2976379..2976819) 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY2081 hypothetical protein; N-acetyltransferase GCN5 2976819 5313024 Amet_2950 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001320759.1 2976379 R 293826 CDS YP_001320760.1 150390711 5313025 complement(2977359..2978753) 1 NC_009633.1 KEGG: bth:BT_1831 hypothetical protein; hypothetical protein 2978753 5313025 Amet_2951 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320760.1 2977359 R 293826 CDS YP_001320761.1 150390712 5313026 complement(2978962..2980263) 1 NC_009633.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: dsy:DSY3754 hypothetical protein; DEAD/DEAH box helicase 2980263 5313026 Amet_2952 Alkaliphilus metalliredigens QYMF DEAD/DEAH box helicase YP_001320761.1 2978962 R 293826 CDS YP_001320762.1 150390713 5313027 complement(2980856..2981830) 1 NC_009633.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: ppd:Ppro_2951 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 2981830 5313027 Amet_2953 Alkaliphilus metalliredigens QYMF D-isomer specific 2-hydroxyacid dehydrogenase YP_001320762.1 2980856 R 293826 CDS YP_001320763.1 150390714 5313028 complement(2982040..2983059) 1 NC_009633.1 PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; KEGG: mxa:MXAN_4097 D-alanine-D-alanine ligase family protein; D-alanine--D-alanine ligase 2983059 5313028 Amet_2954 Alkaliphilus metalliredigens QYMF D-alanine--D-alanine ligase YP_001320763.1 2982040 R 293826 CDS YP_001320764.1 150390715 5313029 complement(2983125..2985035) 1 NC_009633.1 KEGG: tte:TTE0924 methionine synthase I, cobalamin-binding domain; hypothetical protein 2985035 5313029 Amet_2955 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320764.1 2983125 R 293826 CDS YP_001320765.1 150390716 5313030 complement(2985035..2986117) 1 NC_009633.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD/NADP octopine/nopaline dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: tte:TTE0923 NAD/NADP octopine/nopaline dehydrogenas; NAD/NADP octopine/nopaline dehydrogenase 2986117 5313030 Amet_2956 Alkaliphilus metalliredigens QYMF NAD/NADP octopine/nopaline dehydrogenase YP_001320765.1 2985035 R 293826 CDS YP_001320766.1 150390717 5313031 complement(2986206..2986928) 1 NC_009633.1 PFAM: initiator RepB protein; KEGG: gka:GKP02 replication initiator protein; initiator RepB protein 2986928 5313031 Amet_2957 Alkaliphilus metalliredigens QYMF initiator RepB protein YP_001320766.1 2986206 R 293826 CDS YP_001320767.1 150390718 5313032 complement(2987226..2988263) 1 NC_009633.1 TIGRFAM: cytidyltransferase-related domain; citrate lyase ligase; PFAM: GCN5-related N-acetyltransferase; Citrate lyase ligase, C-terminal domain protein; KEGG: ctc:CTC02557 citrate (pro-3S)-lyase ligase; citrate lyase ligase 2988263 5313032 Amet_2958 Alkaliphilus metalliredigens QYMF citrate lyase ligase YP_001320767.1 2987226 R 293826 CDS YP_001320768.1 150390719 5313033 complement(2988486..2989373) 1 NC_009633.1 catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase 2989373 garR 5313033 garR Alkaliphilus metalliredigens QYMF tartronate semialdehyde reductase YP_001320768.1 2988486 R 293826 CDS YP_001320769.1 150390720 5313034 complement(2989464..2991074) 1 NC_009633.1 PFAM: chemotaxis sensory transducer; KEGG: dsy:DSY0999 hypothetical protein; methyl-accepting chemotaxis sensory transducer 2991074 5313034 Amet_2960 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001320769.1 2989464 R 293826 CDS YP_001320770.1 150390721 5313035 complement(2991206..2992102) 1 NC_009633.1 PFAM: Auxin Efflux Carrier; KEGG: bha:BH2670 hypothetical protein; auxin efflux carrier 2992102 5313035 Amet_2961 Alkaliphilus metalliredigens QYMF auxin efflux carrier YP_001320770.1 2991206 R 293826 CDS YP_001320771.1 150390722 5313036 complement(2992211..2992714) 1 NC_009633.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: mja:MJ1277 3-isopropylmalate dehydratase small subunit; 3-isopropylmalate dehydratase small subunit 2992714 5313036 Amet_2962 Alkaliphilus metalliredigens QYMF 3-isopropylmalate dehydratase small subunit YP_001320771.1 2992211 R 293826 CDS YP_001320772.1 150390723 5313037 complement(2992714..2993991) 1 NC_009633.1 TIGRFAM: homoaconitate hydratase family protein; 3-isopropylmalate dehydratase; PFAM: aconitate hydratase domain protein; KEGG: mka:MK1440 3-isopropylmalate dehydratase large subunit; 3-isopropylmalate dehydratase 2993991 5313037 Amet_2963 Alkaliphilus metalliredigens QYMF 3-isopropylmalate dehydratase YP_001320772.1 2992714 R 293826 CDS YP_001320773.1 150390724 5313038 complement(2994120..2995436) 1 NC_009633.1 PFAM: Citrate carrier protein; KEGG: tde:TDE2700 citrate carrier protein, CCS family; citrate carrier protein 2995436 5313038 Amet_2964 Alkaliphilus metalliredigens QYMF citrate carrier protein YP_001320773.1 2994120 R 293826 CDS YP_001320774.1 150390725 5313039 complement(2995454..2996707) 1 NC_009633.1 PFAM: malic protein domain protein; malic protein, NAD-binding; KEGG: cno:NT01CX_2051 NADP-dependent malic enzyme, putative; malate dehydrogenase 2996707 5313039 Amet_2965 Alkaliphilus metalliredigens QYMF malate dehydrogenase YP_001320774.1 2995454 R 293826 CDS YP_001320775.1 150390726 5313040 complement(2996758..2997447) 1 NC_009633.1 PFAM: response regulator receiver; KEGG: oih:OB3219 truncated two-component response regulator; fused response regulator receiver/hypothetical protein 2997447 5313040 Amet_2966 Alkaliphilus metalliredigens QYMF fused response regulator receiver/hypothetical protein YP_001320775.1 2996758 R 293826 CDS YP_001320776.1 150390727 5313041 complement(2997444..2999048) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: bat:BAS0545 sensory box histidine kinase; signal transduction histidine kinase regulating citrate/malate metabolism 2999048 5313041 Amet_2967 Alkaliphilus metalliredigens QYMF signal transduction histidine kinase regulating citrate/malate metabolism YP_001320776.1 2997444 R 293826 CDS YP_001320777.1 150390728 5313042 2999378..3000118 1 NC_009633.1 PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: dsy:DSY4015 hypothetical protein; peptidase C26 3000118 5313042 Amet_2968 Alkaliphilus metalliredigens QYMF peptidase C26 YP_001320777.1 2999378 D 293826 CDS YP_001320778.1 150390729 5313043 complement(3000278..3001483) 1 NC_009633.1 PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: dsy:DSY0462 hypothetical protein; diguanylate phosphodiesterase 3001483 5313043 Amet_2969 Alkaliphilus metalliredigens QYMF diguanylate phosphodiesterase YP_001320778.1 3000278 R 293826 CDS YP_001320779.1 150390730 5313044 3001951..3002679 1 NC_009633.1 KEGG: ctc:CTC00958 hypothetical protein; hypothetical protein 3002679 5313044 Amet_2970 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320779.1 3001951 D 293826 CDS YP_001320780.1 150390731 5313045 complement(3002776..3002997) 1 NC_009633.1 KEGG: cth:Cthe_1210 hypothetical protein; hypothetical protein 3002997 5313045 Amet_2971 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320780.1 3002776 R 293826 CDS YP_001320781.1 150390732 5313047 complement(3003735..3004766) 1 NC_009633.1 TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: fnu:FN0436 regulator of kinase autophosphorylation inhibitor; urea amidolyase-like protein 3004766 5313047 Amet_2973 Alkaliphilus metalliredigens QYMF urea amidolyase-like protein YP_001320781.1 3003735 R 293826 CDS YP_001320782.1 150390733 5313048 complement(3004759..3005508) 1 NC_009633.1 PFAM: Allophanate hydrolase subunit 1; KEGG: tte:TTE1607 allophanate hydrolase subunit 1; allophanate hydrolase subunit 1 3005508 5313048 Amet_2974 Alkaliphilus metalliredigens QYMF allophanate hydrolase subunit 1 YP_001320782.1 3004759 R 293826 CDS YP_001320783.1 150390734 5313049 complement(3005582..3006364) 1 NC_009633.1 PFAM: protein of unknown function DUF1445; KEGG: sfu:Sfum_3393 protein of unknown function DUF1445; hypothetical protein 3006364 5313049 Amet_2975 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320783.1 3005582 R 293826 CDS YP_001320784.1 150390735 5313050 complement(3006464..3007666) 1 NC_009633.1 KEGG: fnu:FN0438 branched chain amino acid transport system II carrier protein; branched chain amino acid transport system II carrier protein 3007666 5313050 Amet_2976 Alkaliphilus metalliredigens QYMF branched chain amino acid transport system II carrier protein YP_001320784.1 3006464 R 293826 CDS YP_001320785.1 150390736 5313051 complement(3007695..3008465) 1 NC_009633.1 PFAM: LamB/YcsF family protein; KEGG: cjj:CJJ81176_1526 LamB/YcsF family protein; LamB/YcsF family protein 3008465 5313051 Amet_2977 Alkaliphilus metalliredigens QYMF LamB/YcsF family protein YP_001320785.1 3007695 R 293826 CDS YP_001320786.1 150390737 5313052 complement(3008696..3010084) 1 NC_009633.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: gme:Gmet_0555 two component, sigma54 specific, transcriptional regulator, fis family; two component sigma54 specific Fis family transcriptional regulator 3010084 5313052 Amet_2978 Alkaliphilus metalliredigens QYMF two component sigma54 specific Fis family transcriptional regulator YP_001320786.1 3008696 R 293826 CDS YP_001320787.1 150390738 5313053 complement(3010158..3011936) 1 NC_009633.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: atoS, atoC; sensor protein AtoS for response regulator AtoC; multi-sensor signal transduction histidine kinase 3011936 5313053 Amet_2979 Alkaliphilus metalliredigens QYMF multi-sensor signal transduction histidine kinase YP_001320787.1 3010158 R 293826 CDS YP_001320788.1 150390739 5313054 complement(3011950..3013446) 1 NC_009633.1 PFAM: Na+/solute symporter; KEGG: pde:Pden_4529 Na+/solute symporter; Na+/solute symporter 3013446 5313054 Amet_2980 Alkaliphilus metalliredigens QYMF Na+/solute symporter YP_001320788.1 3011950 R 293826 CDS YP_001320789.1 150390740 5313055 complement(3013439..3013576) 1 NC_009633.1 hypothetical protein 3013576 5313055 Amet_2981 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320789.1 3013439 R 293826 CDS YP_001320790.1 150390741 5313056 complement(3013896..3015281) 1 NC_009633.1 KEGG: lsa:LSA0870 hypothetical protein; hypothetical protein 3015281 5313056 Amet_2982 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320790.1 3013896 R 293826 CDS YP_001320791.1 150390742 5313058 complement(3015509..3017329) 1 NC_009633.1 KEGG: sde:Sde_3690 hypothetical protein; hypothetical protein 3017329 5313058 Amet_2984 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320791.1 3015509 R 293826 CDS YP_001320792.1 150390743 5313064 complement(3019206..3019613) 1 NC_009633.1 PFAM: ribonuclease H; KEGG: aba:Acid345_0088 ribonuclease H; ribonuclease H 3019613 5313064 Amet_2989 Alkaliphilus metalliredigens QYMF ribonuclease H YP_001320792.1 3019206 R 293826 CDS YP_001320793.1 150390744 5313065 complement(3019650..3020768) 1 NC_009633.1 PFAM: protein of unknown function DUF34; KEGG: bat:BAS4191 conserved hypothetical protein TIGR00486; hypothetical protein 3020768 5313065 Amet_2990 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320793.1 3019650 R 293826 CDS YP_001320794.1 150390745 5313066 complement(3020753..3021454) 1 NC_009633.1 PFAM: protein of unknown function DUF633; KEGG: tte:TTE1754 predicted SAM-dependent methyltransferase; hypothetical protein 3021454 5313066 Amet_2991 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320794.1 3020753 R 293826 CDS YP_001320795.1 150390746 5313067 3021619..3021822 1 NC_009633.1 hypothetical protein 3021822 5313067 Amet_2992 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320795.1 3021619 D 293826 CDS YP_001320796.1 150390747 5313068 complement(3021900..3023018) 1 NC_009633.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma-70; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: cth:Cthe_0895 RNA polymerase, sigma 38 subunit, RpoS; RpoD family RNA polymerase sigma factor 3023018 5313068 Amet_2993 Alkaliphilus metalliredigens QYMF RpoD family RNA polymerase sigma factor YP_001320796.1 3021900 R 293826 CDS YP_001320797.1 150390748 5313069 complement(3023037..3024872) 1 NC_009633.1 synthesizes RNA primers at the replication forks; DNA primase 3024872 dnaG 5313069 dnaG Alkaliphilus metalliredigens QYMF DNA primase YP_001320797.1 3023037 R 293826 CDS YP_001320798.1 150390749 5313070 complement(3024940..3025407) 1 NC_009633.1 PFAM: protein of unknown function DUF188; KEGG: cpf:CPF_2548 YaiI/YqxD family protein; hypothetical protein 3025407 5313070 Amet_2995 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320798.1 3024940 R 293826 CDS YP_001320799.1 150390750 5313071 complement(3025491..3026501) 1 NC_009633.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 3026501 5313071 Amet_2996 Alkaliphilus metalliredigens QYMF deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_001320799.1 3025491 R 293826 CDS YP_001320800.1 150390751 5313072 complement(3026938..3027270) 1 NC_009633.1 PFAM: branched-chain amino acid transport; KEGG: dsy:DSY2397 hypothetical protein; branched-chain amino acid transport 3027270 5313072 Amet_2997 Alkaliphilus metalliredigens QYMF branched-chain amino acid transport YP_001320800.1 3026938 R 293826 CDS YP_001320801.1 150390752 5313073 complement(3027260..3027961) 1 NC_009633.1 PFAM: AzlC family protein; KEGG: fnu:FN1039 branched-chain amino acid transport protein AzlC; AzlC family protein 3027961 5313073 Amet_2998 Alkaliphilus metalliredigens QYMF AzlC family protein YP_001320801.1 3027260 R 293826 CDS YP_001320802.1 150390753 5313074 complement(3028068..3029456) 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: bsu:BG12133 similar to transcriptional regulator (GntR family) / aminotransferase (MocR-like); GntR family transcriptional regulator 3029456 5313074 Amet_2999 Alkaliphilus metalliredigens QYMF GntR family transcriptional regulator YP_001320802.1 3028068 R 293826 CDS YP_001320803.1 150390754 5313075 complement(3029707..3031770) 1 NC_009633.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: lpl:lp_1425 fumarate reductase, flavoprotein subunit precursor; succinate dehydrogenase 3031770 5313075 Amet_3000 Alkaliphilus metalliredigens QYMF succinate dehydrogenase YP_001320803.1 3029707 R 293826 CDS YP_001320804.1 150390755 5313076 complement(3032292..3032987) 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE2689 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; two component transcriptional regulator 3032987 5313076 Amet_3001 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001320804.1 3032292 R 293826 CDS YP_001320805.1 150390756 5313077 3033303..3035090 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: bce:BC4588 phosphate regulon sensor protein PhoR; integral membrane sensor signal transduction histidine kinase 3035090 5313077 Amet_3002 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001320805.1 3033303 D 293826 CDS YP_001320806.1 150390757 5313078 complement(3035497..3036876) 1 NC_009633.1 tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan; tryptophanase 3036876 tnaA 5313078 tnaA Alkaliphilus metalliredigens QYMF tryptophanase YP_001320806.1 3035497 R 293826 CDS YP_001320807.1 150390758 5313079 3037078..3038397 1 NC_009633.1 KEGG: gka:GK3253 hypothetical protein; hypothetical protein 3038397 5313079 Amet_3004 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320807.1 3037078 D 293826 CDS YP_001320808.1 150390759 5313083 complement(3039166..3039771) 1 NC_009633.1 PFAM: regulatory protein, TetR; KEGG: cno:NT01CX_0025 transcription regulator (TetR/AcrR family); TetR family transcriptional regulator 3039771 5313083 Amet_3008 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001320808.1 3039166 R 293826 CDS YP_001320809.1 150390760 5313084 3040013..3041863 1 NC_009633.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: lpl:lp_3491 fumarate reductase, flavoprotein subunit precursor; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3041863 5313084 Amet_3009 Alkaliphilus metalliredigens QYMF fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_001320809.1 3040013 D 293826 CDS YP_001320810.1 150390761 5313085 3043113..3044477 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: wol:WD0563 transposase, IS4 family; transposase, IS4 family protein 3044477 5313085 Amet_3010 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001320810.1 3043113 D 293826 CDS YP_001320811.1 150390762 5313087 complement(3045104..3045784) 1 NC_009633.1 KEGG: cpf:CPF_2623 hypothetical protein; hypothetical protein 3045784 5313087 Amet_3012 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320811.1 3045104 R 293826 CDS YP_001320812.1 150390763 5313088 complement(3045954..3046553) 1 NC_009633.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 3046553 5313088 Amet_3013 Alkaliphilus metalliredigens QYMF 30S ribosomal protein S4 YP_001320812.1 3045954 R 293826 CDS YP_001320813.1 150390764 5313089 complement(3046681..3047109) 1 NC_009633.1 TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: mac:MA2699 flavodoxin; flavodoxin 3047109 5313089 Amet_3014 Alkaliphilus metalliredigens QYMF flavodoxin YP_001320813.1 3046681 R 293826 CDS YP_001320814.1 150390765 5313090 complement(3047614..3047886) 1 NC_009633.1 PFAM: protein of unknown function DUF156; KEGG: dsy:DSY0389 hypothetical protein; hypothetical protein 3047886 5313090 Amet_3015 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320814.1 3047614 R 293826 CDS YP_001320815.1 150390766 5313091 complement(3047911..3049218) 1 NC_009633.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dge:Dgeo_2542 MATE efflux family protein; MATE efflux family protein 3049218 5313091 Amet_3016 Alkaliphilus metalliredigens QYMF MATE efflux family protein YP_001320815.1 3047911 R 293826 CDS YP_001320816.1 150390767 5313092 complement(3049607..3050290) 1 NC_009633.1 hypothetical protein 3050290 5313092 Amet_3017 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320816.1 3049607 R 293826 CDS YP_001320817.1 150390768 5313093 complement(3050295..3050618) 1 NC_009633.1 PFAM: transcriptional regulator PadR family protein; KEGG: ctc:CTC00601 putative transcriptional regulator (PadR family); PadR-like family transcriptional regulator 3050618 5313093 Amet_3018 Alkaliphilus metalliredigens QYMF PadR-like family transcriptional regulator YP_001320817.1 3050295 R 293826 CDS YP_001320818.1 150390769 5313094 complement(3051095..3053731) 1 NC_009633.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 3053731 5313094 Amet_3019 Alkaliphilus metalliredigens QYMF pyruvate phosphate dikinase YP_001320818.1 3051095 R 293826 CDS YP_001320819.1 150390770 5313095 complement(3053753..3054586) 1 NC_009633.1 PFAM: protein of unknown function DUF299; KEGG: bcl:ABC1687 hypothetical protein; hypothetical protein 3054586 5313095 Amet_3020 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320819.1 3053753 R 293826 CDS YP_001320820.1 150390771 5313096 complement(3054597..3055235) 1 NC_009633.1 PFAM: CBS domain containing protein; Helix-turn-helix, type 11 domain protein; KEGG: ctc:CTC02015 conserved protein with cbs domain; hypothetical protein 3055235 5313096 Amet_3021 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320820.1 3054597 R 293826 CDS YP_001320821.1 150390772 5313097 complement(3055413..3056801) 1 NC_009633.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 3056801 5313097 Amet_3022 Alkaliphilus metalliredigens QYMF glycyl-tRNA synthetase YP_001320821.1 3055413 R 293826 CDS YP_001320822.1 150390773 5313098 complement(3057213..3057746) 1 NC_009633.1 PFAM: ubiquitin-associated- domain-containing protein; KEGG: tte:TTE0977 hypothetical protein; ubiquitin-associated domain-containing protein 3057746 5313098 Amet_3023 Alkaliphilus metalliredigens QYMF ubiquitin-associated domain-containing protein YP_001320822.1 3057213 R 293826 CDS YP_001320823.1 150390774 5313099 complement(3057767..3058507) 1 NC_009633.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: cth:Cthe_1066 DNA repair protein RecO; DNA repair protein RecO 3058507 5313099 Amet_3024 Alkaliphilus metalliredigens QYMF DNA repair protein RecO YP_001320823.1 3057767 R 293826 CDS YP_001320824.1 150390775 5313100 complement(3058564..3058731) 1 NC_009633.1 hypothetical protein 3058731 5313100 Amet_3025 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320824.1 3058564 R 293826 CDS YP_001320825.1 150390776 5313101 complement(3058836..3059723) 1 NC_009633.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 3059723 era 5313101 era Alkaliphilus metalliredigens QYMF GTP-binding protein Era YP_001320825.1 3058836 R 293826 CDS YP_001320826.1 150390777 5313102 complement(3059735..3060136) 1 NC_009633.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: cpr:CPR_1988 cytidine deaminase; cytidine deaminase 3060136 5313102 Amet_3027 Alkaliphilus metalliredigens QYMF cytidine deaminase YP_001320826.1 3059735 R 293826 CDS YP_001320827.1 150390778 5313103 complement(3060168..3061217) 1 NC_009633.1 KEGG: cth:Cthe_0155 hypothetical protein; hypothetical protein 3061217 5313103 Amet_3028 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320827.1 3060168 R 293826 CDS YP_001320828.1 150390779 5313104 complement(3061214..3061831) 1 NC_009633.1 PFAM: protein of unknown function DUF502; KEGG: pca:Pcar_1826 hypothetical protein; hypothetical protein 3061831 5313104 Amet_3029 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320828.1 3061214 R 293826 CDS YP_001320829.1 150390780 5313105 complement(3061940..3062638) 1 NC_009633.1 PFAM: phosphoesterase, PA-phosphatase related; diacylglycerol kinase; KEGG: tte:TTE0973 Diacylglycerol kinase; diacylglycerol kinase 3062638 5313105 Amet_3030 Alkaliphilus metalliredigens QYMF diacylglycerol kinase YP_001320829.1 3061940 R 293826 CDS YP_001320830.1 150390781 5313106 complement(3062654..3063121) 1 NC_009633.1 PFAM: protein of unknown function UPF0054; KEGG: chy:CHY_0427 conserved hypothetical protein TIGR00043; hypothetical protein 3063121 5313106 Amet_3031 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320830.1 3062654 R 293826 CDS YP_001320831.1 150390782 5313107 complement(3063099..3065309) 1 NC_009633.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; metal-dependent phosphohydrolase, 7TM intracellular region; metal-dependent phosphohydrolase, 7TM extracellular region; SMART: metal-dependent phosphohydrolase, HD region; KEGG: tte:TTE0971 predicted membrane-associated HD superfamily hydrolase; metal dependent phosphohydrolase 3065309 5313107 Amet_3032 Alkaliphilus metalliredigens QYMF metal dependent phosphohydrolase YP_001320831.1 3063099 R 293826 CDS YP_001320832.1 150390783 5313108 complement(3065347..3066363) 1 NC_009633.1 PFAM: PhoH family protein; KEGG: tte:TTE0970 Phosphate starvation-inducible protein PhoH, predicted ATPase; PhoH family protein 3066363 5313108 Amet_3033 Alkaliphilus metalliredigens QYMF PhoH family protein YP_001320832.1 3065347 R 293826 CDS YP_001320833.1 150390784 5313109 complement(3066367..3067599) 1 NC_009633.1 PFAM: putative stage IV sporulation YqfD; KEGG: tte:TTE0969 stage IV sporulation protein; putative stage IV sporulation YqfD 3067599 5313109 Amet_3034 Alkaliphilus metalliredigens QYMF putative stage IV sporulation YqfD YP_001320833.1 3066367 R 293826 CDS YP_001320834.1 150390785 5313110 complement(3067612..3067887) 1 NC_009633.1 PFAM: protein of unknown function DUF1429; KEGG: cth:Cthe_1073 protein of unknown function DUF1429; hypothetical protein 3067887 5313110 Amet_3035 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320834.1 3067612 R 293826 CDS YP_001320835.1 150390786 5313111 complement(3067999..3068520) 1 NC_009633.1 hypothetical protein 3068520 5313111 Amet_3036 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320835.1 3067999 R 293826 CDS YP_001320836.1 150390787 5313112 complement(3068588..3069577) 1 NC_009633.1 PFAM: protein of unknown function DUF1432; KEGG: cth:Cthe_0858 protein of unknown function DUF1432; hypothetical protein 3069577 5313112 Amet_3037 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320836.1 3068588 R 293826 CDS YP_001320837.1 150390788 5313113 complement(3069590..3070888) 1 NC_009633.1 PFAM: protein of unknown function DUF107; KEGG: bld:BLi02730 YqeZ; hypothetical protein 3070888 5313113 Amet_3038 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320837.1 3069590 R 293826 CDS YP_001320838.1 150390789 5313114 complement(3071170..3072309) 1 NC_009633.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: oih:OB1305 hypothetical protein; endonuclease/exonuclease/phosphatase 3072309 5313114 Amet_3039 Alkaliphilus metalliredigens QYMF endonuclease/exonuclease/phosphatase YP_001320838.1 3071170 R 293826 CDS YP_001320839.1 150390790 5313115 complement(3072534..3074408) 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase; transposase, IS4 family protein 3074408 5313115 Amet_3040 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001320839.1 3072534 R 293826 CDS YP_001320840.1 150390791 5313116 complement(3074665..3075111) 1 NC_009633.1 PFAM: GatB/Yqey domain protein; KEGG: cth:Cthe_1347 GatB/YqeY; GatB/Yqey domain-containing protein 3075111 5313116 Amet_3041 Alkaliphilus metalliredigens QYMF GatB/Yqey domain-containing protein YP_001320840.1 3074665 R 293826 CDS YP_001320841.1 150390792 5313117 complement(3075158..3075331) 1 NC_009633.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3075331 rpsU 5313117 rpsU Alkaliphilus metalliredigens QYMF 30S ribosomal protein S21 YP_001320841.1 3075158 R 293826 CDS YP_001320842.1 150390793 5313118 complement(3075464..3075808) 1 NC_009633.1 PFAM: histidine triad (HIT) protein; KEGG: tte:TTE0963 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase; histidine triad (HIT) protein 3075808 5313118 Amet_3043 Alkaliphilus metalliredigens QYMF histidine triad (HIT) protein YP_001320842.1 3075464 R 293826 CDS YP_001320843.1 150390794 5313119 complement(3075915..3077216) 1 NC_009633.1 KEGG: cth:Cthe_0150 RNA modification enzyme, MiaB family; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB; RNA modification protein 3077216 5313119 Amet_3044 Alkaliphilus metalliredigens QYMF RNA modification protein YP_001320843.1 3075915 R 293826 CDS YP_001320844.1 150390795 5313120 complement(3077217..3077981) 1 NC_009633.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 3077981 5313120 Amet_3045 Alkaliphilus metalliredigens QYMF 16S ribosomal RNA methyltransferase RsmE YP_001320844.1 3077217 R 293826 CDS YP_001320845.1 150390796 5313121 complement(3077974..3078927) 1 NC_009633.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 3078927 prmA 5313121 prmA Alkaliphilus metalliredigens QYMF 50S ribosomal protein L11 methyltransferase YP_001320845.1 3077974 R 293826 CDS YP_001320846.1 150390797 5313122 complement(3079137..3080273) 1 NC_009633.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: cth:Cthe_1321 chaperone protein DnaJ; chaperone protein DnaJ 3080273 5313122 Amet_3047 Alkaliphilus metalliredigens QYMF chaperone protein DnaJ YP_001320846.1 3079137 R 293826 CDS YP_001320847.1 150390798 5313123 complement(3080349..3082193) 1 NC_009633.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 3082193 dnaK 5313123 dnaK Alkaliphilus metalliredigens QYMF molecular chaperone DnaK YP_001320847.1 3080349 R 293826 CDS YP_001320848.1 150390799 5313124 complement(3082244..3082852) 1 NC_009633.1 PFAM: GrpE protein; KEGG: tte:TTE0954 Molecular chaperone GrpE (heat shock protein); GrpE protein HSP-70 cofactor 3082852 5313124 Amet_3049 Alkaliphilus metalliredigens QYMF GrpE protein HSP-70 cofactor YP_001320848.1 3082244 R 293826 CDS YP_001320849.1 150390800 5313125 complement(3082999..3084030) 1 NC_009633.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: cpf:CPF_2292 heat-inducible transcription repressor HrcA; heat-inducible transcription repressor HrcA 3084030 5313125 Amet_3050 Alkaliphilus metalliredigens QYMF heat-inducible transcription repressor HrcA YP_001320849.1 3082999 R 293826 CDS YP_001320850.1 150390801 5313126 complement(3084200..3085339) 1 NC_009633.1 KEGG: cth:Cthe_1325 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase 3085339 5313126 Amet_3051 Alkaliphilus metalliredigens QYMF putative oxygen-independent coproporphyrinogen III oxidase YP_001320850.1 3084200 R 293826 CDS YP_001320851.1 150390802 5313127 complement(3085467..3087275) 1 NC_009633.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 3087275 5313127 Amet_3052 Alkaliphilus metalliredigens QYMF GTP-binding protein LepA YP_001320851.1 3085467 R 293826 CDS YP_001320852.1 150390803 5313128 complement(3087401..3087712) 1 NC_009633.1 hypothetical protein 3087712 5313128 Amet_3053 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320852.1 3087401 R 293826 CDS YP_001320853.1 150390804 5313129 complement(3087765..3089018) 1 NC_009633.1 PFAM: Stage II sporulation P family protein; KEGG: tte:TTE0947 stage II sporulation protein P; stage II sporulation P family protein 3089018 5313129 Amet_3054 Alkaliphilus metalliredigens QYMF stage II sporulation P family protein YP_001320853.1 3087765 R 293826 CDS YP_001320854.1 150390805 5313130 complement(3089143..3090117) 1 NC_009633.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination; germination protease 3090117 5313130 Amet_3055 Alkaliphilus metalliredigens QYMF germination protease YP_001320854.1 3089143 R 293826 CDS YP_001320855.1 150390806 5313131 3090325..3090588 1 NC_009633.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 3090588 rpsT 5313131 rpsT Alkaliphilus metalliredigens QYMF 30S ribosomal protein S20 YP_001320855.1 3090325 D 293826 CDS YP_001320856.1 150390807 5313132 complement(3090686..3091726) 1 NC_009633.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: cth:Cthe_1040 DNA polymerase III, delta subunit; DNA polymerase III subunit delta 3091726 5313132 Amet_3057 Alkaliphilus metalliredigens QYMF DNA polymerase III subunit delta YP_001320856.1 3090686 R 293826 CDS YP_001320857.1 150390808 5313133 complement(3091723..3093189) 1 NC_009633.1 PFAM: ComEC/Rec2-related protein; KEGG: tte:TTE0941 predicted hydrolases of metallo-beta-lactamase fold; ComEC/Rec2-like protein 3093189 5313133 Amet_3058 Alkaliphilus metalliredigens QYMF ComEC/Rec2-like protein YP_001320857.1 3091723 R 293826 CDS YP_001320858.1 150390809 5313134 complement(3093300..3093608) 1 NC_009633.1 hypothetical protein 3093608 5313134 Amet_3059 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320858.1 3093300 R 293826 CDS YP_001320859.1 150390810 5313135 complement(3093700..3094437) 1 NC_009633.1 PFAM: beta-lactamase domain protein; KEGG: cth:Cthe_3155 beta-lactamase-like protein; beta-lactamase domain-containing protein 3094437 5313135 Amet_3060 Alkaliphilus metalliredigens QYMF beta-lactamase domain-containing protein YP_001320859.1 3093700 R 293826 CDS YP_001320860.1 150390811 5313136 complement(3094475..3095740) 1 NC_009633.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1841 TPR repeat-containing protein; hypothetical protein 3095740 5313136 Amet_3061 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320860.1 3094475 R 293826 CDS YP_001320861.1 150390812 5313137 3095973..3096854 1 NC_009633.1 PFAM: beta-lactamase domain protein; KEGG: tte:TTE2430 predicted hydrolase of metallo-beta-lactamase fold; beta-lactamase domain-containing protein 3096854 5313137 Amet_3062 Alkaliphilus metalliredigens QYMF beta-lactamase domain-containing protein YP_001320861.1 3095973 D 293826 CDS YP_001320862.1 150390813 5313138 complement(3096836..3097516) 1 NC_009633.1 hypothetical protein 3097516 5313138 Amet_3063 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320862.1 3096836 R 293826 CDS YP_001320863.1 150390814 5313139 complement(3097513..3099759) 1 NC_009633.1 KEGG: ctc:CTC02250 modification methylase bstVI; hypothetical protein 3099759 5313139 Amet_3064 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320863.1 3097513 R 293826 CDS YP_001320864.1 150390815 5313140 3100050..3100730 1 NC_009633.1 KEGG: bha:BH2880 hypothetical protein; hypothetical protein 3100730 5313140 Amet_3065 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320864.1 3100050 D 293826 CDS YP_001320865.1 150390816 5313141 complement(3100757..3101695) 1 NC_009633.1 hypothetical protein 3101695 5313141 Amet_3066 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320865.1 3100757 R 293826 CDS YP_001320866.1 150390817 5313142 3101950..3102417 1 NC_009633.1 hypothetical protein 3102417 5313142 Amet_3067 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320866.1 3101950 D 293826 CDS YP_001320867.1 150390818 5313143 3102511..3103518 1 NC_009633.1 KEGG: mta:Moth_2291 hypothetical protein; hypothetical protein 3103518 5313143 Amet_3068 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320867.1 3102511 D 293826 CDS YP_001320868.1 150390819 5313144 complement(3103575..3104360) 1 NC_009633.1 PFAM: ABC-2 type transporter; KEGG: hso:HS_0849 ABC-type multidrug transport system, permease component; ABC transporter 3104360 5313144 Amet_3069 Alkaliphilus metalliredigens QYMF ABC transporter YP_001320868.1 3103575 R 293826 CDS YP_001320869.1 150390820 5313145 complement(3104370..3105275) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0755 ABC transporter related; ABC transporter-like protein 3105275 5313145 Amet_3070 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001320869.1 3104370 R 293826 CDS YP_001320870.1 150390821 5313146 complement(3105402..3107048) 1 NC_009633.1 PFAM: Amidohydrolase 3; KEGG: sth:STH1237 hypothetical protein; amidohydrolase 3 3107048 5313146 Amet_3071 Alkaliphilus metalliredigens QYMF amidohydrolase 3 YP_001320870.1 3105402 R 293826 CDS YP_001320871.1 150390822 5313147 3107174..3107701 1 NC_009633.1 PFAM: phosphatidylglycerophosphatase A; KEGG: tte:TTE0928 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 3107701 5313147 Amet_3072 Alkaliphilus metalliredigens QYMF phosphatidylglycerophosphatase A YP_001320871.1 3107174 D 293826 CDS YP_001320872.1 150390823 5313148 complement(3107817..3109406) 1 NC_009633.1 PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cno:NT01CX_0997 ATP-dependent RNA helicase; DEAD/DEAH box helicase 3109406 5313148 Amet_3073 Alkaliphilus metalliredigens QYMF DEAD/DEAH box helicase YP_001320872.1 3107817 R 293826 CDS YP_001320873.1 150390824 5313149 complement(3109631..3110740) 1 NC_009633.1 PFAM: spore germination B3 GerAC family protein; KEGG: ctc:CTC02447 spore germination protein B3/KC; spore germination B3 GerAC family protein 3110740 5313149 Amet_3074 Alkaliphilus metalliredigens QYMF spore germination B3 GerAC family protein YP_001320873.1 3109631 R 293826 CDS YP_001320874.1 150390825 5313150 complement(3110737..3112086) 1 NC_009633.1 PFAM: GerA spore germination protein; KEGG: ctc:CTC02448 spore germination protein KA; GerA spore germination protein 3112086 5313150 Amet_3075 Alkaliphilus metalliredigens QYMF GerA spore germination protein YP_001320874.1 3110737 R 293826 CDS YP_001320875.1 150390826 5313151 3112279..3113361 1 NC_009633.1 TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: ctc:CTC02449 spore germination protein B2/KB; spore germination protein 3113361 5313151 Amet_3076 Alkaliphilus metalliredigens QYMF spore germination protein YP_001320875.1 3112279 D 293826 CDS YP_001320876.1 150390827 5313152 complement(3113479..3114441) 1 NC_009633.1 PFAM: peptidase M19, renal dipeptidase; KEGG: tko:TK2040 microsomal dipeptidase homolog; membrane dipeptidase 3114441 5313152 Amet_3077 Alkaliphilus metalliredigens QYMF membrane dipeptidase YP_001320876.1 3113479 R 293826 CDS YP_001320877.1 150390828 5313153 3114756..3117281 1 NC_009633.1 PFAM: protein of unknown function DUF214; KEGG: cac:CAC3561 ABC-type transporter, permease component; hypothetical protein 3117281 5313153 Amet_3078 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320877.1 3114756 D 293826 CDS YP_001320878.1 150390829 5313154 3117295..3117969 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC3560 ABC-type transporter, ATPase component; ABC transporter-like protein 3117969 5313154 Amet_3079 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001320878.1 3117295 D 293826 CDS YP_001320879.1 150390830 5313155 3117960..3119039 1 NC_009633.1 PFAM: secretion protein HlyD family protein; KEGG: cac:CAC0141 membrane permease, predicted cation efflux pumps; secretion protein HlyD family protein 3119039 5313155 Amet_3080 Alkaliphilus metalliredigens QYMF secretion protein HlyD family protein YP_001320879.1 3117960 D 293826 CDS YP_001320880.1 150390831 5313156 complement(3119143..3119874) 1 NC_009633.1 PFAM: amino acid-binding ACT domain protein; MgtC/SapB transporter; KEGG: cth:Cthe_1919 MgtC/SapB transporter; MgtC/SapB transporter 3119874 5313156 Amet_3081 Alkaliphilus metalliredigens QYMF MgtC/SapB transporter YP_001320880.1 3119143 R 293826 CDS YP_001320881.1 150390832 5313157 complement(3120012..3121520) 1 NC_009633.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: fnu:FN2105 integral membrane protein; hypothetical protein 3121520 5313157 Amet_3082 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320881.1 3120012 R 293826 CDS YP_001320882.1 150390833 5313158 complement(3121541..3121969) 1 NC_009633.1 KEGG: fnu:FN2104 hypothetical protein; hypothetical protein 3121969 5313158 Amet_3083 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320882.1 3121541 R 293826 CDS YP_001320883.1 150390834 5313159 complement(3122078..3123046) 1 NC_009633.1 PFAM: Uncharacterized protein UPF0065; KEGG: fnu:FN2103 RecA protein; hypothetical protein 3123046 5313159 Amet_3084 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320883.1 3122078 R 293826 CDS YP_001320884.1 150390835 5313160 complement(3123158..3124144) 1 NC_009633.1 PFAM: Uncharacterized protein UPF0065; KEGG: fnu:FN2103 RecA protein; hypothetical protein 3124144 5313160 Amet_3085 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320884.1 3123158 R 293826 CDS YP_001320885.1 150390836 5313161 complement(3124407..3126167) 1 NC_009633.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: cth:Cthe_1393 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 3126167 5313161 Amet_3086 Alkaliphilus metalliredigens QYMF multi-sensor signal transduction histidine kinase YP_001320885.1 3124407 R 293826 CDS YP_001320886.1 150390837 5313162 complement(3126176..3126886) 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE1633 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; two component transcriptional regulator 3126886 5313162 Amet_3087 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001320886.1 3126176 R 293826 CDS YP_001320887.1 150390838 5313163 complement(3126926..3127177) 1 NC_009633.1 hypothetical protein 3127177 5313163 Amet_3088 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320887.1 3126926 R 293826 CDS YP_001320888.1 150390839 5313164 complement(3127486..3128490) 1 NC_009633.1 PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; KEGG: ctc:CTC02424 electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein subunit alpha/beta-like protein 3128490 5313164 Amet_3089 Alkaliphilus metalliredigens QYMF electron transfer flavoprotein subunit alpha/beta-like protein YP_001320888.1 3127486 R 293826 CDS YP_001320889.1 150390840 5313165 complement(3128519..3129304) 1 NC_009633.1 PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; KEGG: cpr:CPR_2285 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit alpha/beta-like protein 3129304 5313165 Amet_3090 Alkaliphilus metalliredigens QYMF electron transfer flavoprotein subunit alpha/beta-like protein YP_001320889.1 3128519 R 293826 CDS YP_001320890.1 150390841 5313166 complement(3129319..3130458) 1 NC_009633.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: fnu:FN0783 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 3130458 5313166 Amet_3091 Alkaliphilus metalliredigens QYMF acyl-CoA dehydrogenase domain-containing protein YP_001320890.1 3129319 R 293826 CDS YP_001320891.1 150390842 5313167 complement(3130514..3130927) 1 NC_009633.1 PFAM: MaoC domain protein dehydratase; KEGG: tte:TTE0551 predicted acyl dehydratase; dehydratase 3130927 5313167 Amet_3092 Alkaliphilus metalliredigens QYMF dehydratase YP_001320891.1 3130514 R 293826 CDS YP_001320892.1 150390843 5313168 complement(3131134..3131295) 1 NC_009633.1 hypothetical protein 3131295 5313168 Amet_3093 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320892.1 3131134 R 293826 CDS YP_001320893.1 150390844 5313169 3131831..3132322 1 NC_009633.1 PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: swo:Swol_0656 NADH:ubiquinone oxidoreductase 24 kD subunit-like protein; NADH dehydrogenase (ubiquinone), 24 kDa subunit 3132322 5313169 Amet_3094 Alkaliphilus metalliredigens QYMF NADH dehydrogenase (ubiquinone), 24 kDa subunit YP_001320893.1 3131831 D 293826 CDS YP_001320894.1 150390845 5313170 3132326..3134074 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: swo:Swol_0657 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 3134074 5313170 Amet_3095 Alkaliphilus metalliredigens QYMF NADH dehydrogenase (quinone) YP_001320894.1 3132326 D 293826 CDS YP_001320895.1 150390846 5313171 3134102..3137665 1 NC_009633.1 PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: swo:Swol_0658 glutamate synthase beta chain-related oxidoreductase, containing 2Fe-2S and 4Fe-4S clusters; molybdopterin oxidoreductase 3137665 5313171 Amet_3096 Alkaliphilus metalliredigens QYMF molybdopterin oxidoreductase YP_001320895.1 3134102 D 293826 CDS YP_001320896.1 150390847 5313172 complement(3137730..3137861) 1 NC_009633.1 hypothetical protein 3137861 5313172 Amet_3097 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320896.1 3137730 R 293826 CDS YP_001320897.1 150390848 5313173 complement(3138082..3138420) 1 NC_009633.1 Contains selenocysteine; PFAM: glutaredoxin; KEGG: rxy:Rxyl_1609 glutaredoxin-like protein, YruB; glutaredoxin 3138420 5313173 Amet_3098 Alkaliphilus metalliredigens QYMF glutaredoxin YP_001320897.1 3138082 R 293826 CDS YP_001320898.1 150390849 5313174 complement(3138448..3138669) 1 NC_009633.1 KEGG: cac:CAC0545 uncharacterized small protein, homolog of Treponema (6136517); hypothetical protein 3138669 5313174 Amet_3099 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320898.1 3138448 R 293826 CDS YP_001320899.1 150390850 5313175 3138911..3139669 1 NC_009633.1 KEGG: bar:GBAA5476 hypothetical protein; hypothetical protein 3139669 5313175 Amet_3100 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320899.1 3138911 D 293826 CDS YP_001320900.1 150390851 5313176 3139666..3140880 1 NC_009633.1 PFAM: glycosyl transferase, family 2; KEGG: bca:BCE_5356 glycosyl transferase domain protein, putative; glycosyl transferase family protein 3140880 5313176 Amet_3101 Alkaliphilus metalliredigens QYMF glycosyl transferase family protein YP_001320900.1 3139666 D 293826 CDS YP_001320901.1 150390852 5313177 complement(3140985..3141554) 1 NC_009633.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: chy:CHY_1871 HDIG domain protein; metal dependent phosphohydrolase 3141554 5313177 Amet_3102 Alkaliphilus metalliredigens QYMF metal dependent phosphohydrolase YP_001320901.1 3140985 R 293826 CDS YP_001320902.1 150390853 5313178 complement(3141634..3142617) 1 NC_009633.1 TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: dde:Dde_2947 HflC protein; HflC protein 3142617 5313178 Amet_3103 Alkaliphilus metalliredigens QYMF HflC protein YP_001320902.1 3141634 R 293826 CDS YP_001320903.1 150390854 5313179 complement(3142618..3143583) 1 NC_009633.1 TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: lip:LI0675 membrane protease subunits, stomatin/prohibitin homologs; HflK protein 3143583 5313179 Amet_3104 Alkaliphilus metalliredigens QYMF HflK protein YP_001320903.1 3142618 R 293826 CDS YP_001320904.1 150390855 5313180 complement(3143689..3144771) 1 NC_009633.1 KEGG: cth:Cthe_0434 ATPase; ATPase 3144771 5313180 Amet_3105 Alkaliphilus metalliredigens QYMF ATPase YP_001320904.1 3143689 R 293826 CDS YP_001320905.1 150390856 5313181 complement(3144964..3147756) 1 NC_009633.1 PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: cth:Cthe_0306 DNA gyrase/topoisomerase IV, subunit A; DNA topoisomerase 3147756 5313181 Amet_3106 Alkaliphilus metalliredigens QYMF DNA topoisomerase YP_001320905.1 3144964 R 293826 CDS YP_001320906.1 150390857 5313182 complement(3147775..3149817) 1 NC_009633.1 PFAM: DNA gyrase, subunit B domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; KEGG: cth:Cthe_0305 DNA topoisomerase (ATP-hydrolyzing); DNA gyrase subunit B 3149817 5313182 Amet_3107 Alkaliphilus metalliredigens QYMF DNA gyrase subunit B YP_001320906.1 3147775 R 293826 CDS YP_001320907.1 150390858 5313183 3150063..3150380 1 NC_009633.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: rba:RB7019 hypothetical protein; carboxymuconolactone decarboxylase 3150380 5313183 Amet_3108 Alkaliphilus metalliredigens QYMF carboxymuconolactone decarboxylase YP_001320907.1 3150063 D 293826 CDS YP_001320908.1 150390859 5313184 3150552..3150902 1 NC_009633.1 PFAM: Endoribonuclease L-PSP; KEGG: pha:PSHAa0974 with YjgF-like domain highly conserved in gamma-proteobacteria; endoribonuclease L-PSP 3150902 5313184 Amet_3109 Alkaliphilus metalliredigens QYMF endoribonuclease L-PSP YP_001320908.1 3150552 D 293826 CDS YP_001320909.1 150390860 5313186 complement(3151182..3151607) 1 NC_009633.1 PFAM: protein of unknown function DUF606; KEGG: cac:CAC3547 hypothetical protein; hypothetical protein 3151607 5313186 Amet_3111 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320909.1 3151182 R 293826 CDS YP_001320910.1 150390861 5313187 3151784..3152275 1 NC_009633.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: mth:MTH1484 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like protein 3152275 5313187 Amet_3112 Alkaliphilus metalliredigens QYMF pyridoxamine 5'-phosphate oxidase-like protein YP_001320910.1 3151784 D 293826 CDS YP_001320911.1 150390862 5313188 complement(3152384..3153382) 1 NC_009633.1 PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: ctc:CTC01191 TonB-dependent receptor protein; ErfK/YbiS/YcfS/YnhG family protein 3153382 5313188 Amet_3113 Alkaliphilus metalliredigens QYMF ErfK/YbiS/YcfS/YnhG family protein YP_001320911.1 3152384 R 293826 CDS YP_001320912.1 150390863 5313189 complement(3153510..3156611) 1 NC_009633.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 3156611 ileS 5313189 ileS Alkaliphilus metalliredigens QYMF isoleucyl-tRNA synthetase YP_001320912.1 3153510 R 293826 CDS YP_001320913.1 150390864 5313190 complement(3157032..3158801) 1 NC_009633.1 PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: ctc:CTC00427 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 3158801 5313190 Amet_3115 Alkaliphilus metalliredigens QYMF glycerophosphoryl diester phosphodiesterase YP_001320913.1 3157032 R 293826 CDS YP_001320914.1 150390865 5313191 complement(3159138..3160244) 1 NC_009633.1 PFAM: glycine hydroxymethyltransferase; aminotransferase, class I and II; KEGG: pho:PH1654 serine hydroxymethyltransferase; glycine hydroxymethyltransferase 3160244 5313191 Amet_3116 Alkaliphilus metalliredigens QYMF glycine hydroxymethyltransferase YP_001320914.1 3159138 R 293826 CDS YP_001320915.1 150390866 5313192 complement(3160411..3161703) 1 NC_009633.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: dvu:DVU1700 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 3161703 5313192 Amet_3117 Alkaliphilus metalliredigens QYMF beta-lactamase domain-containing protein YP_001320915.1 3160411 R 293826 CDS YP_001320916.1 150390867 5313193 complement(3161700..3162581) 1 NC_009633.1 PFAM: KWG Leptospira repeat protein; KEGG: chu:CHU_2188 hypothetical protein; hypothetical protein 3162581 5313193 Amet_3118 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320916.1 3161700 R 293826 CDS YP_001320917.1 150390868 5313194 complement(3162632..3163498) 1 NC_009633.1 hypothetical protein 3163498 5313194 Amet_3119 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320917.1 3162632 R 293826 CDS YP_001320918.1 150390869 5313195 complement(3163697..3164398) 1 NC_009633.1 KEGG: lic:LIC10622 motility protein A; hypothetical protein 3164398 5313195 Amet_3120 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320918.1 3163697 R 293826 CDS YP_001320919.1 150390870 5313196 complement(3164476..3164991) 1 NC_009633.1 hypothetical protein 3164991 5313196 Amet_3121 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320919.1 3164476 R 293826 CDS YP_001320920.1 150390871 5313198 complement(3165479..3167104) 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 5; KEGG: cth:Cthe_0910 extracellular solute-binding protein, family 5; extracellular solute-binding protein 3167104 5313198 Amet_3122 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001320920.1 3165479 R 293826 CDS YP_001320921.1 150390872 5313199 complement(3167266..3167835) 1 NC_009633.1 PFAM: Lytic transglycosylase, catalytic; KEGG: cac:CAC1100 secreted protein, similar to catalytic domain of murein transglycosylase; lytic transglycosylase catalytic subunit 3167835 5313199 Amet_3123 Alkaliphilus metalliredigens QYMF lytic transglycosylase catalytic subunit YP_001320921.1 3167266 R 293826 CDS YP_001320922.1 150390873 5313200 complement(3167857..3168459) 1 NC_009633.1 TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; KEGG: tte:TTE0875 dephospho-CoA kinase; dephospho-CoA kinase 3168459 5313200 Amet_3124 Alkaliphilus metalliredigens QYMF dephospho-CoA kinase YP_001320922.1 3167857 R 293826 CDS YP_001320923.1 150390874 5313201 complement(3168468..3171161) 1 NC_009633.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 3171161 5313201 Amet_3125 Alkaliphilus metalliredigens QYMF DNA polymerase I YP_001320923.1 3168468 R 293826 CDS YP_001320924.1 150390875 5313202 complement(3171380..3172624) 1 NC_009633.1 KEGG: hma:rrnAC0808 hypothetical protein; hypothetical protein 3172624 5313202 Amet_3126 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320924.1 3171380 R 293826 CDS YP_001320925.1 150390876 5313203 complement(3172614..3173219) 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: cth:Cthe_0890 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3173219 5313203 Amet_3127 Alkaliphilus metalliredigens QYMF ECF subfamily RNA polymerase sigma-24 factor YP_001320925.1 3172614 R 293826 CDS YP_001320926.1 150390877 5313204 complement(3173350..3174315) 1 NC_009633.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: dsy:DSY1801 hypothetical protein; membrane-bound metal-dependent hydrolase 3174315 5313204 Amet_3128 Alkaliphilus metalliredigens QYMF membrane-bound metal-dependent hydrolase YP_001320926.1 3173350 R 293826 CDS YP_001320927.1 150390878 5313206 complement(3174879..3176030) 1 NC_009633.1 hypothetical protein 3176030 5313206 Amet_3129 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320927.1 3174879 R 293826 CDS YP_001320928.1 150390879 5313207 3176240..3177811 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: mhu:Mhun_1523 transposase, IS4; transposase, IS4 family protein 3177811 5313207 Amet_3130 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001320928.1 3176240 D 293826 CDS YP_001320929.1 150390880 5313208 complement(3177825..3178241) 1 NC_009633.1 hypothetical protein 3178241 5313208 Amet_3131 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320929.1 3177825 R 293826 CDS YP_001320930.1 150390881 5313209 complement(3178670..3179119) 1 NC_009633.1 hypothetical protein 3179119 5313209 Amet_3132 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320930.1 3178670 R 293826 CDS YP_001320931.1 150390882 5313210 complement(3179119..3179514) 1 NC_009633.1 PFAM: helix-turn-helix domain protein; KEGG: swo:Swol_1542 hypothetical protein; helix-turn-helix domain-containing protein 3179514 5313210 Amet_3133 Alkaliphilus metalliredigens QYMF helix-turn-helix domain-containing protein YP_001320931.1 3179119 R 293826 CDS YP_001320932.1 150390883 5313211 complement(3179544..3179957) 1 NC_009633.1 hypothetical protein 3179957 5313211 Amet_3134 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320932.1 3179544 R 293826 CDS YP_001320933.1 150390884 5313212 complement(3180685..3181002) 1 NC_009633.1 hypothetical protein 3181002 5313212 Amet_3135 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320933.1 3180685 R 293826 CDS YP_001320934.1 150390885 5313213 complement(3181303..3181752) 1 NC_009633.1 hypothetical protein 3181752 5313213 Amet_3136 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320934.1 3181303 R 293826 CDS YP_001320935.1 150390886 5313214 3181861..3182751 1 NC_009633.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ctc:CTC01013 cobalt-zinc-cadmium resistance protein CzcD; cation diffusion facilitator family transporter 3182751 5313214 Amet_3137 Alkaliphilus metalliredigens QYMF cation diffusion facilitator family transporter YP_001320935.1 3181861 D 293826 CDS YP_001320936.1 150390887 5313215 3182823..3183725 1 NC_009633.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: dsy:DSY4221 hypothetical protein; LysR family transcriptional regulator 3183725 5313215 Amet_3138 Alkaliphilus metalliredigens QYMF LysR family transcriptional regulator YP_001320936.1 3182823 D 293826 CDS YP_001320937.1 150390888 5313216 complement(3183845..3184678) 1 NC_009633.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: chy:CHY_2418 DegV family protein; DegV family protein 3184678 5313216 Amet_3139 Alkaliphilus metalliredigens QYMF DegV family protein YP_001320937.1 3183845 R 293826 CDS YP_001320938.1 150390889 5313217 complement(3184767..3186200) 1 NC_009633.1 catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 3186200 5313217 Amet_3140 Alkaliphilus metalliredigens QYMF putative aminopeptidase YP_001320938.1 3184767 R 293826 CDS YP_001320939.1 150390890 5313218 complement(3186305..3186958) 1 NC_009633.1 PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: cth:Cthe_1267 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 3186958 5313218 Amet_3141 Alkaliphilus metalliredigens QYMF two component LuxR family transcriptional regulator YP_001320939.1 3186305 R 293826 CDS YP_001320940.1 150390891 5313219 complement(3186958..3188136) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; Sensor DegS domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: cth:Cthe_1268 histidine kinase; histidine kinase 3188136 5313219 Amet_3142 Alkaliphilus metalliredigens QYMF histidine kinase YP_001320940.1 3186958 R 293826 CDS YP_001320941.1 150390892 5313220 complement(3188384..3188857) 1 NC_009633.1 hypothetical protein 3188857 5313220 Amet_3143 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320941.1 3188384 R 293826 CDS YP_001320942.1 150390893 5313221 complement(3189085..3189534) 1 NC_009633.1 PFAM: CheW domain protein; KEGG: chy:CHY_1030 chemotaxis protein CheW; putative CheW protein 3189534 5313221 Amet_3144 Alkaliphilus metalliredigens QYMF putative CheW protein YP_001320942.1 3189085 R 293826 CDS YP_001320943.1 150390894 5313222 complement(3189667..3189843) 1 NC_009633.1 PFAM: protein of unknown function DUF896; KEGG: oih:OB1671 hypothetical protein; hypothetical protein 3189843 5313222 Amet_3145 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320943.1 3189667 R 293826 CDS YP_001320944.1 150390895 5313223 complement(3189932..3190723) 1 NC_009633.1 hypothetical protein 3190723 5313223 Amet_3146 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320944.1 3189932 R 293826 CDS YP_001320945.1 150390896 5313224 3190914..3191213 1 NC_009633.1 hypothetical protein 3191213 5313224 Amet_3147 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320945.1 3190914 D 293826 CDS YP_001320946.1 150390897 5313225 complement(3191266..3192534) 1 NC_009633.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 3192534 5313225 Amet_3148 Alkaliphilus metalliredigens QYMF imidazolonepropionase YP_001320946.1 3191266 R 293826 CDS YP_001320947.1 150390898 5313226 complement(3192652..3194175) 1 NC_009633.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 3194175 5313226 Amet_3149 Alkaliphilus metalliredigens QYMF histidine ammonia-lyase YP_001320947.1 3192652 R 293826 CDS YP_001320948.1 150390899 5313227 complement(3194454..3194699) 1 NC_009633.1 PFAM: protein of unknown function UPF0180; KEGG: swo:Swol_1506 hypothetical protein; hypothetical protein 3194699 5313227 Amet_3150 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320948.1 3194454 R 293826 CDS YP_001320949.1 150390900 5313228 complement(3194805..3195260) 1 NC_009633.1 PFAM: regulatory protein, MarR; KEGG: gka:GK2669 transcriptional regulator (MarR family); MarR family transcriptional regulator 3195260 5313228 Amet_3151 Alkaliphilus metalliredigens QYMF MarR family transcriptional regulator YP_001320949.1 3194805 R 293826 CDS YP_001320950.1 150390901 5313229 3195490..3196413 1 NC_009633.1 PFAM: peptidase M23B; KEGG: tte:TTE0841 membrane proteins related to metalloendopeptidase; peptidase M23B 3196413 5313229 Amet_3152 Alkaliphilus metalliredigens QYMF peptidase M23B YP_001320950.1 3195490 D 293826 CDS YP_001320951.1 150390902 5313230 3196449..3196829 1 NC_009633.1 PFAM: protein of unknown function DUF583; KEGG: tte:TTE0840 hypothetical protein; hypothetical protein 3196829 5313230 Amet_3153 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320951.1 3196449 D 293826 CDS YP_001320952.1 150390903 5313231 complement(3196879..3197784) 1 NC_009633.1 PFAM: diacylglycerol kinase, catalytic region; KEGG: bcz:BCZK0294 hypothetical protein; diacylglycerol kinase catalytic subunit 3197784 5313231 Amet_3154 Alkaliphilus metalliredigens QYMF diacylglycerol kinase catalytic subunit YP_001320952.1 3196879 R 293826 CDS YP_001320953.1 150390904 5313232 complement(3197813..3199297) 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: cth:Cthe_2689 transcriptional regulator, GntR family; GntR family transcriptional regulator 3199297 5313232 Amet_3155 Alkaliphilus metalliredigens QYMF GntR family transcriptional regulator YP_001320953.1 3197813 R 293826 CDS YP_001320954.1 150390905 5313233 complement(3199526..3199717) 1 NC_009633.1 KEGG: cac:CAC1617 hypothetical protein; hypothetical protein 3199717 5313233 Amet_3156 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320954.1 3199526 R 293826 CDS YP_001320955.1 150390906 5313234 complement(3199745..3201496) 1 NC_009633.1 PFAM: Aldehyde ferredoxin oxidoreductase-like; KEGG: mac:MA2962 aldehyde ferredoxin oxidoreductase; aldehyde ferredoxin oxidoreductase 3201496 5313234 Amet_3157 Alkaliphilus metalliredigens QYMF aldehyde ferredoxin oxidoreductase YP_001320955.1 3199745 R 293826 CDS YP_001320956.1 150390907 5313235 complement(3201493..3201924) 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mma:MM3327 ferredoxin; 4Fe-4S ferredoxin 3201924 5313235 Amet_3158 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001320956.1 3201493 R 293826 CDS YP_001320957.1 150390908 5313236 3202199..3203947 1 NC_009633.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0836 ABC-type multidrug/protein/lipid transport system, ATPase component; ABC transporter-like protein 3203947 5313236 Amet_3159 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001320957.1 3202199 D 293826 CDS YP_001320958.1 150390909 5313237 3203965..3206040 1 NC_009633.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0835 ABC-type multidrug/protein/lipid transport system, ATPase component; ABC transporter-like protein 3206040 5313237 Amet_3160 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001320958.1 3203965 D 293826 CDS YP_001320959.1 150390910 5313238 3206773..3207996 1 NC_009633.1 TIGRFAM: arginine deiminase; PFAM: amidinotransferase; KEGG: efa:EF0104 arginine deiminase; arginine deiminase 3207996 5313238 Amet_3161 Alkaliphilus metalliredigens QYMF arginine deiminase YP_001320959.1 3206773 D 293826 CDS YP_001320960.1 150390911 5313239 3208049..3208888 1 NC_009633.1 TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP C-terminal domain protein; KEGG: oih:OB0554 histidinol phosphatase; HisJ family histidinol phosphate phosphatase 3208888 5313239 Amet_3162 Alkaliphilus metalliredigens QYMF HisJ family histidinol phosphate phosphatase YP_001320960.1 3208049 D 293826 CDS YP_001320961.1 150390912 5313240 complement(3209018..3209281) 1 NC_009633.1 KEGG: gka:GK0630 hypothetical protein; hypothetical protein 3209281 5313240 Amet_3163 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320961.1 3209018 R 293826 CDS YP_001320962.1 150390913 5313241 complement(3209436..3210071) 1 NC_009633.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sth:STH2889 hypothetical protein; diguanylate cyclase 3210071 5313241 Amet_3164 Alkaliphilus metalliredigens QYMF diguanylate cyclase YP_001320962.1 3209436 R 293826 CDS YP_001320963.1 150390914 5313242 3210363..3211958 1 NC_009633.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: cth:Cthe_2688 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 3211958 5313242 Amet_3165 Alkaliphilus metalliredigens QYMF polysaccharide biosynthesis protein YP_001320963.1 3210363 D 293826 CDS YP_001320964.1 150390915 5313243 complement(3211980..3213707) 1 NC_009633.1 PFAM: PHP C-terminal domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding, class 1; KEGG: tte:TTE2516 hypothetical DNA polymerase / putative histidinol phosphatase; phosphotransferase domain-containing protein 3213707 5313243 Amet_3166 Alkaliphilus metalliredigens QYMF phosphotransferase domain-containing protein YP_001320964.1 3211980 R 293826 CDS YP_001320965.1 150390916 5313244 complement(3213821..3214264) 1 NC_009633.1 PFAM: MOSC domain containing protein; KEGG: ppd:Ppro_0303 MOSC domain containing protein; MOSC domain-containing protein 3214264 5313244 Amet_3167 Alkaliphilus metalliredigens QYMF MOSC domain-containing protein YP_001320965.1 3213821 R 293826 CDS YP_001320966.1 150390917 5313245 complement(3214281..3216206) 1 NC_009633.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: cac:CAC2020 molybdopterin biosynthesis enzyme, MoeA, fused to molibdopterin-binding domain; putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein 3216206 5313245 Amet_3168 Alkaliphilus metalliredigens QYMF putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein YP_001320966.1 3214281 R 293826 CDS YP_001320967.1 150390918 5313246 complement(3216255..3217484) 1 NC_009633.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: chy:CHY_0798 putative molybdopterin biosynthesis MoeA protein; molybdenum cofactor synthesis domain-containing protein 3217484 5313246 Amet_3169 Alkaliphilus metalliredigens QYMF molybdenum cofactor synthesis domain-containing protein YP_001320967.1 3216255 R 293826 CDS YP_001320968.1 150390919 5313247 complement(3218156..3219928) 1 NC_009633.1 KEGG: ctc:CTC00531 ATP-dependent zinc metallopeptidase; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 3219928 5313247 Amet_3170 Alkaliphilus metalliredigens QYMF ATP-dependent metalloprotease FtsH YP_001320968.1 3218156 R 293826 CDS YP_001320969.1 150390920 5313248 complement(3220176..3221213) 1 NC_009633.1 KEGG: cth:Cthe_0313 hypothetical protein; hypothetical protein 3221213 5313248 Amet_3171 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320969.1 3220176 R 293826 CDS YP_001320970.1 150390921 5313249 complement(3221414..3221605) 1 NC_009633.1 hypothetical protein 3221605 5313249 Amet_3172 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320970.1 3221414 R 293826 CDS YP_001320971.1 150390922 5313251 complement(3221987..3222913) 1 NC_009633.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: cpr:CPR_2089 pseudouridylate synthase family protein, yabo; RluA family pseudouridine synthase 3222913 5313251 Amet_3173 Alkaliphilus metalliredigens QYMF RluA family pseudouridine synthase YP_001320971.1 3221987 R 293826 CDS YP_001320972.1 150390923 5313252 3223191..3223997 1 NC_009633.1 PFAM: ATP-NAD/AcoX kinase; KEGG: ljo:LJ0824 probable inorganic polyphosphate/ATP-NAD kinase; NAD(+) kinase 3223997 5313252 Amet_3174 Alkaliphilus metalliredigens QYMF NAD(+) kinase YP_001320972.1 3223191 D 293826 CDS YP_001320973.1 150390924 5313253 complement(3224178..3225401) 1 NC_009633.1 PFAM: sodium:dicarboxylate symporter; KEGG: ctc:CTC00822 proton/sodium-glutamate symport protein; sodium:dicarboxylate symporter 3225401 5313253 Amet_3175 Alkaliphilus metalliredigens QYMF sodium:dicarboxylate symporter YP_001320973.1 3224178 R 293826 CDS YP_001320974.1 150390925 5313254 complement(3225684..3226583) 1 NC_009633.1 PFAM: response regulator receiver; YcbB domain; KEGG: tte:TTE1203 CheY-like receiver domains; response regulator receiver protein 3226583 5313254 Amet_3176 Alkaliphilus metalliredigens QYMF response regulator receiver protein YP_001320974.1 3225684 R 293826 CDS YP_001320975.1 150390926 5313256 3227119..3228579 1 NC_009633.1 KEGG: ctc:CTC00917 transposase; transposase 3228579 5313256 Amet_3178 Alkaliphilus metalliredigens QYMF transposase YP_001320975.1 3227119 D 293826 CDS YP_001320976.1 150390927 5313257 complement(3229778..3230368) 1 NC_009633.1 hypothetical protein 3230368 5313257 Amet_3179 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320976.1 3229778 R 293826 CDS YP_001320977.1 150390928 5313258 3230487..3230777 1 NC_009633.1 hypothetical protein 3230777 5313258 Amet_3180 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320977.1 3230487 D 293826 CDS YP_001320978.1 150390929 5313259 complement(3230801..3231427) 1 NC_009633.1 hypothetical protein 3231427 5313259 Amet_3181 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320978.1 3230801 R 293826 CDS YP_001320979.1 150390930 5313260 complement(3231587..3232735) 1 NC_009633.1 PFAM: sodium:dicarboxylate symporter; KEGG: cno:NT01CX_0943 sodium:dicarboxylate symporter family protein; sodium:dicarboxylate symporter 3232735 5313260 Amet_3182 Alkaliphilus metalliredigens QYMF sodium:dicarboxylate symporter YP_001320979.1 3231587 R 293826 CDS YP_001320980.1 150390931 5313261 3233045..3234298 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: tte:TTE0887 ferredoxin 2; Fe-S cluster domain-containing protein 3234298 5313261 Amet_3183 Alkaliphilus metalliredigens QYMF Fe-S cluster domain-containing protein YP_001320980.1 3233045 D 293826 CDS YP_001320981.1 150390932 5313262 complement(3234386..3235051) 1 NC_009633.1 KEGG: dsy:DSY4194 hypothetical protein; nitrogen regulatory protein P-II 3235051 5313262 Amet_3184 Alkaliphilus metalliredigens QYMF nitrogen regulatory protein P-II YP_001320981.1 3234386 R 293826 CDS YP_001320982.1 150390933 5313263 complement(3235044..3236534) 1 NC_009633.1 PFAM: protein of unknown function DUF1538; KEGG: dsy:DSY4195 hypothetical protein; hypothetical protein 3236534 5313263 Amet_3185 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320982.1 3235044 R 293826 CDS YP_001320983.1 150390934 5313265 3237328..3238290 1 NC_009633.1 PFAM: NQR2 and RnfD family protein; KEGG: sth:STH897 Na+-transporting NADH-quinone reductase subunit 2; NQR2 and RnfD family protein 3238290 5313265 Amet_3186 Alkaliphilus metalliredigens QYMF NQR2 and RnfD family protein YP_001320983.1 3237328 D 293826 CDS YP_001320984.1 150390935 5313266 3238287..3238889 1 NC_009633.1 PFAM: FMN-binding domain protein; KEGG: pgi:PG2180 NADH:ubiquinone oxidoreductase, Na translocating, C subunit; FMN-binding domain-containing protein 3238889 5313266 Amet_3187 Alkaliphilus metalliredigens QYMF FMN-binding domain-containing protein YP_001320984.1 3238287 D 293826 CDS YP_001320985.1 150390936 5313267 3238891..3239520 1 NC_009633.1 PFAM: RnfA-Nqr electron transport subunit; KEGG: csa:Csal_1572 NADH:ubiquinone oxidoreductase, subunit D; RnfA-Nqr electron transport subunit 3239520 5313267 Amet_3188 Alkaliphilus metalliredigens QYMF RnfA-Nqr electron transport subunit YP_001320985.1 3238891 D 293826 CDS YP_001320986.1 150390937 5313268 3239520..3240110 1 NC_009633.1 PFAM: RnfA-Nqr electron transport subunit; KEGG: vch:VC2291 NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE; RnfA-Nqr electron transport subunit 3240110 5313268 Amet_3189 Alkaliphilus metalliredigens QYMF RnfA-Nqr electron transport subunit YP_001320986.1 3239520 D 293826 CDS YP_001320987.1 150390938 5313269 3240127..3241227 1 NC_009633.1 PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: nmc:NMC0505 putative Na(+)-translocating NADH-ubiquinone reductase subunit F; oxidoreductase FAD/NAD(P)-binding subunit 3241227 5313269 Amet_3190 Alkaliphilus metalliredigens QYMF oxidoreductase FAD/NAD(P)-binding subunit YP_001320987.1 3240127 D 293826 CDS YP_001320988.1 150390939 5313270 complement(3241291..3241959) 1 NC_009633.1 KEGG: cno:NT01CX_1567 probable enzyme with TIM-barrel fold; response regulator receiver protein 3241959 5313270 Amet_3191 Alkaliphilus metalliredigens QYMF response regulator receiver protein YP_001320988.1 3241291 R 293826 CDS YP_001320989.1 150390940 5313271 complement(3242049..3242408) 1 NC_009633.1 hypothetical protein 3242408 5313271 Amet_3192 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001320989.1 3242049 R 293826 CDS YP_001320990.1 150390941 5313272 complement(3242581..3243759) 1 NC_009633.1 PFAM: aminotransferase class-III; KEGG: bcl:ABC2432 acetylornithine aminotransferase; class III aminotransferase 3243759 5313272 Amet_3193 Alkaliphilus metalliredigens QYMF class III aminotransferase YP_001320990.1 3242581 R 293826 CDS YP_001320991.1 150390942 5313273 complement(3243756..3244976) 1 NC_009633.1 TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; KEGG: bld:BLi02996 aspartokinase II (alpha and beta subunits); RBL03770; aspartate kinase 3244976 5313273 Amet_3194 Alkaliphilus metalliredigens QYMF aspartate kinase YP_001320991.1 3243756 R 293826 CDS YP_001320992.1 150390943 5313274 complement(3244983..3245696) 1 NC_009633.1 PFAM: transferase hexapeptide repeat containing protein; Tetrahydrodipicolinate succinyltransferase N-terminal domain protein; KEGG: gka:GK1049 putative tetrahydrodipicolinate N-acetyltransferase; tetrahydrodipicolinate succinyltransferase domain-containing protein 3245696 5313274 Amet_3195 Alkaliphilus metalliredigens QYMF tetrahydrodipicolinate succinyltransferase domain-containing protein YP_001320992.1 3244983 R 293826 CDS YP_001320993.1 150390944 5313275 complement(3245801..3246523) 1 NC_009633.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 3246523 5313275 Amet_3196 Alkaliphilus metalliredigens QYMF dihydrodipicolinate reductase YP_001320993.1 3245801 R 293826 CDS YP_001320994.1 150390945 5313276 complement(3246538..3247410) 1 NC_009633.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 3247410 5313276 Amet_3197 Alkaliphilus metalliredigens QYMF dihydrodipicolinate synthase YP_001320994.1 3246538 R 293826 CDS YP_001320995.1 150390946 5313277 complement(3247426..3248421) 1 NC_009633.1 TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; KEGG: dvl:Dvul_0328 aspartate-semialdehyde dehydrogenase; aspartate-semialdehyde dehydrogenase 3248421 5313277 Amet_3198 Alkaliphilus metalliredigens QYMF aspartate-semialdehyde dehydrogenase YP_001320995.1 3247426 R 293826 CDS YP_001320996.1 150390947 5313278 complement(3249125..3250108) 1 NC_009633.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase, SleB; KEGG: dsy:DSY3257 hypothetical protein; cell wall hydrolase SleB 3250108 5313278 Amet_3199 Alkaliphilus metalliredigens QYMF cell wall hydrolase SleB YP_001320996.1 3249125 R 293826 CDS YP_001320997.1 150390948 5313279 complement(3250333..3251148) 1 NC_009633.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dre:402904 zgc:109720; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3251148 5313279 Amet_3200 Alkaliphilus metalliredigens QYMF nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001320997.1 3250333 R 293826 CDS YP_001320998.1 150390949 5313280 complement(3251247..3252374) 1 NC_009633.1 TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: cac:CA_P0022 spore germination protein, GrkB; spore germination protein 3252374 5313280 Amet_3201 Alkaliphilus metalliredigens QYMF spore germination protein YP_001320998.1 3251247 R 293826 CDS YP_001320999.1 150390950 5313281 3252461..3254077 1 NC_009633.1 PFAM: GerA spore germination protein; KEGG: chy:CHY_0336 spore germination protein GerKA; GerA spore germination protein 3254077 5313281 Amet_3202 Alkaliphilus metalliredigens QYMF GerA spore germination protein YP_001320999.1 3252461 D 293826 CDS YP_001321000.1 150390951 5313282 3254101..3255252 1 NC_009633.1 PFAM: spore germination B3 GerAC family protein; KEGG: dsy:DSY2110 hypothetical protein; spore germination B3 GerAC family protein 3255252 5313282 Amet_3203 Alkaliphilus metalliredigens QYMF spore germination B3 GerAC family protein YP_001321000.1 3254101 D 293826 CDS YP_001321001.1 150390952 5313283 3255252..3255476 1 NC_009633.1 hypothetical protein 3255476 5313283 Amet_3204 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321001.1 3255252 D 293826 CDS YP_001321002.1 150390953 5313284 3255592..3256584 1 NC_009633.1 TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: tte:TTE0297 Lipoate-protein ligase A; lipoyltransferase and lipoate-protein ligase 3256584 5313284 Amet_3205 Alkaliphilus metalliredigens QYMF lipoyltransferase and lipoate-protein ligase YP_001321002.1 3255592 D 293826 CDS YP_001321003.1 150390954 5313285 complement(3256689..3257702) 1 NC_009633.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: cpf:CPF_2132 FMN-dependent dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase 3257702 5313285 Amet_3206 Alkaliphilus metalliredigens QYMF FMN-dependent alpha-hydroxy acid dehydrogenase YP_001321003.1 3256689 R 293826 CDS YP_001321004.1 150390955 5313286 complement(3257976..3258509) 1 NC_009633.1 hypothetical protein 3258509 5313286 Amet_3207 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321004.1 3257976 R 293826 CDS YP_001321005.1 150390956 5313287 complement(3258583..3260007) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: cac:CAC2434 membrane associatehistidine kinase with HAMP domain; integral membrane sensor signal transduction histidine kinase 3260007 5313287 Amet_3208 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001321005.1 3258583 R 293826 CDS YP_001321006.1 150390957 5313288 complement(3260004..3260681) 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC2435 response regulator (CheY-like domain and HTH-type DNA-binding domain); two component transcriptional regulator 3260681 5313288 Amet_3209 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001321006.1 3260004 R 293826 CDS YP_001321007.1 150390958 5313289 complement(3261088..3261852) 1 NC_009633.1 TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: mta:Moth_1417 CoA enzyme activase; putative CoA-substrate-specific enzyme activase 3261852 5313289 Amet_3210 Alkaliphilus metalliredigens QYMF putative CoA-substrate-specific enzyme activase YP_001321007.1 3261088 R 293826 CDS YP_001321008.1 150390959 5313290 complement(3261922..3263082) 1 NC_009633.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: mta:Moth_1446 2-hydroxyglutaryl-CoA dehydratase, D-component; 2-hydroxyglutaryl-CoA dehydratase subunit D 3263082 5313290 Amet_3211 Alkaliphilus metalliredigens QYMF 2-hydroxyglutaryl-CoA dehydratase subunit D YP_001321008.1 3261922 R 293826 CDS YP_001321009.1 150390960 5313291 3263336..3264802 1 NC_009633.1 PFAM: GerA spore germination protein; KEGG: bld:BLi02663 hypothetical protein; GerA spore germination protein 3264802 5313291 Amet_3212 Alkaliphilus metalliredigens QYMF GerA spore germination protein YP_001321009.1 3263336 D 293826 CDS YP_001321010.1 150390961 5313292 complement(3264853..3266157) 1 NC_009633.1 TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; KEGG: bha:BH0745 magnesium citrate secondary transporter; CitMHS family citrate/H+ symporter 3266157 5313292 Amet_3213 Alkaliphilus metalliredigens QYMF CitMHS family citrate/H+ symporter YP_001321010.1 3264853 R 293826 CDS YP_001321011.1 150390962 5313293 complement(3266229..3268529) 1 NC_009633.1 PFAM: aconitate hydratase domain protein; KEGG: dsy:DSY4204 aconitase A; hypothetical protein 3268529 5313293 Amet_3214 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321011.1 3266229 R 293826 CDS YP_001321012.1 150390963 5313294 3268668..3269606 1 NC_009633.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cac:CAC3361 transcriptional regulator, LysR family; LysR family transcriptional regulator 3269606 5313294 Amet_3215 Alkaliphilus metalliredigens QYMF LysR family transcriptional regulator YP_001321012.1 3268668 D 293826 CDS YP_001321013.1 150390964 5313295 complement(3269773..3271011) 1 NC_009633.1 TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; KEGG: saz:Sama_1053 oxaloacetate decarboxylase; sodium ion-translocating decarboxylase subunit beta 3271011 5313295 Amet_3216 Alkaliphilus metalliredigens QYMF sodium ion-translocating decarboxylase subunit beta YP_001321013.1 3269773 R 293826 CDS YP_001321014.1 150390965 5313296 complement(3271049..3271435) 1 NC_009633.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cth:Cthe_0700 biotin/lipoyl attachment protein; biotin/lipoyl attachment domain-containing protein 3271435 5313296 Amet_3217 Alkaliphilus metalliredigens QYMF biotin/lipoyl attachment domain-containing protein YP_001321014.1 3271049 R 293826 CDS YP_001321015.1 150390966 5313297 complement(3271458..3271859) 1 NC_009633.1 PFAM: sodium pump decarboxylase, gamma subunit; sodium pump decarboxylase subunit gamma 3271859 5313297 Amet_3218 Alkaliphilus metalliredigens QYMF sodium pump decarboxylase subunit gamma YP_001321015.1 3271458 R 293826 CDS YP_001321016.1 150390967 5313298 complement(3271895..3273442) 1 NC_009633.1 PFAM: carboxyl transferase; KEGG: tte:TTE2385 Acetyl-CoA carboxylase alpha subunit; carboxyl transferase 3273442 5313298 Amet_3219 Alkaliphilus metalliredigens QYMF carboxyl transferase YP_001321016.1 3271895 R 293826 CDS YP_001321017.1 150390968 5313299 complement(3273550..3274947) 1 NC_009633.1 Converts oxaloacetate to phosphoenolpyruvate using ATP as an energy source; oxaloacetate decarboxylase 3274947 5313299 Amet_3220 Alkaliphilus metalliredigens QYMF oxaloacetate decarboxylase YP_001321017.1 3273550 R 293826 CDS YP_001321018.1 150390969 5313300 complement(3275152..3276771) 1 NC_009633.1 PFAM: chemotaxis sensory transducer; KEGG: mba:Mbar_A0989 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3276771 5313300 Amet_3221 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001321018.1 3275152 R 293826 CDS YP_001321019.1 150390970 5313301 complement(3276965..3277477) 1 NC_009633.1 PFAM: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; KEGG: ctc:CTC02556 citX protein; apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 3277477 5313301 Amet_3222 Alkaliphilus metalliredigens QYMF apo-citrate lyase phosphoribosyl-dephospho-CoA transferase YP_001321019.1 3276965 R 293826 CDS YP_001321020.1 150390971 5313302 complement(3277477..3279030) 1 NC_009633.1 TIGRFAM: citrate lyase, alpha subunit; PFAM: Citrate lyase, alpha subunit; KEGG: ctc:CTC02559 citrate lyase alpha chain; citrate lyase subunit alpha 3279030 5313302 Amet_3223 Alkaliphilus metalliredigens QYMF citrate lyase subunit alpha YP_001321020.1 3277477 R 293826 CDS YP_001321021.1 150390972 5313303 complement(3279043..3279918) 1 NC_009633.1 PFAM: HpcH/HpaI aldolase; KEGG: fnu:FN1379 citrate lyase beta chain / citryl-CoA lyase subunit; citrate (pro-3S)-lyase 3279918 5313303 Amet_3224 Alkaliphilus metalliredigens QYMF citrate (pro-3S)-lyase YP_001321021.1 3279043 R 293826 CDS YP_001321022.1 150390973 5313304 complement(3279922..3280194) 1 NC_009633.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 3280194 5313304 Amet_3225 Alkaliphilus metalliredigens QYMF citrate lyase subunit gamma YP_001321022.1 3279922 R 293826 CDS YP_001321023.1 150390974 5313305 complement(3280301..3281641) 1 NC_009633.1 PFAM: Citrate carrier protein; KEGG: ppr:PBPRA2296 putative citrate-sodium symporter; citrate carrier protein 3281641 5313305 Amet_3226 Alkaliphilus metalliredigens QYMF citrate carrier protein YP_001321023.1 3280301 R 293826 CDS YP_001321024.1 150390975 5313306 complement(3282023..3282790) 1 NC_009633.1 PFAM: response regulator receiver; KEGG: cff:CFF8240_0377 DNA-binding response regulator; response regulator receiver protein 3282790 5313306 Amet_3227 Alkaliphilus metalliredigens QYMF response regulator receiver protein YP_001321024.1 3282023 R 293826 CDS YP_001321025.1 150390976 5313307 complement(3282783..3284543) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: ppd:Ppro_3165 signal transduction histidine kinase with CheB and CheR activity; integral membrane sensor signal transduction histidine kinase 3284543 5313307 Amet_3228 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001321025.1 3282783 R 293826 CDS YP_001321026.1 150390977 5313308 complement(3284712..3285899) 1 NC_009633.1 PFAM: malic protein domain protein; malic protein, NAD-binding; KEGG: ctc:CTC02463 NAD-dependent malic enzyme; malate dehydrogenase 3285899 5313308 Amet_3229 Alkaliphilus metalliredigens QYMF malate dehydrogenase YP_001321026.1 3284712 R 293826 CDS YP_001321027.1 150390978 5313309 3286317..3287297 1 NC_009633.1 PFAM: putative sugar-binding domain protein; KEGG: cpr:CPR_1160 citrate lyase regulator, putative; DeoR family transcriptional regulator 3287297 5313309 Amet_3230 Alkaliphilus metalliredigens QYMF DeoR family transcriptional regulator YP_001321027.1 3286317 D 293826 CDS YP_001321028.1 150390979 5313310 complement(3287461..3287604) 1 NC_009633.1 hypothetical protein 3287604 5313310 Amet_3231 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321028.1 3287461 R 293826 CDS YP_001321029.1 150390980 5313311 complement(3287619..3289028) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; KEGG: mta:Moth_0022 periplasmic sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3289028 5313311 Amet_3232 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001321029.1 3287619 R 293826 CDS YP_001321030.1 150390981 5313312 complement(3289189..3289434) 1 NC_009633.1 hypothetical protein 3289434 5313312 Amet_3233 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321030.1 3289189 R 293826 CDS YP_001321031.1 150390982 5313313 complement(3289526..3289717) 1 NC_009633.1 hypothetical protein 3289717 5313313 Amet_3234 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321031.1 3289526 R 293826 CDS YP_001321032.1 150390983 5313314 complement(3289915..3290304) 1 NC_009633.1 PFAM: Rhodanese domain protein; KEGG: dsy:DSY4705 hypothetical protein; rhodanese domain-containing protein 3290304 5313314 Amet_3235 Alkaliphilus metalliredigens QYMF rhodanese domain-containing protein YP_001321032.1 3289915 R 293826 CDS YP_001321033.1 150390984 5313315 complement(3290441..3290977) 1 NC_009633.1 KEGG: mta:Moth_2212 hypothetical protein; hypothetical protein 3290977 5313315 Amet_3236 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321033.1 3290441 R 293826 CDS YP_001321034.1 150390985 5313316 complement(3290974..3291453) 1 NC_009633.1 KEGG: mta:Moth_2211 hypothetical protein; hypothetical protein 3291453 5313316 Amet_3237 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321034.1 3290974 R 293826 CDS YP_001321035.1 150390986 5313317 complement(3291549..3292325) 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mac:MA4409 hypothetical protein; 4Fe-4S ferredoxin 3292325 5313317 Amet_3238 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001321035.1 3291549 R 293826 CDS YP_001321036.1 150390987 5313318 complement(3292518..3293024) 1 NC_009633.1 hypothetical protein 3293024 5313318 Amet_3239 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321036.1 3292518 R 293826 CDS YP_001321037.1 150390988 5313319 3293203..3293748 1 NC_009633.1 PFAM: BioY protein; KEGG: cac:CAC3456 uncharacterized conserved protein, bioY family; BioY protein 3293748 5313319 Amet_3240 Alkaliphilus metalliredigens QYMF BioY protein YP_001321037.1 3293203 D 293826 CDS YP_001321038.1 150390989 5313320 3293800..3294756 1 NC_009633.1 KEGG: cpf:CPF_1795 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 3294756 5313320 Amet_3241 Alkaliphilus metalliredigens QYMF biotin synthase YP_001321038.1 3293800 D 293826 CDS YP_001321039.1 150390990 5313321 complement(3295275..3296612) 1 NC_009633.1 PFAM: chemotaxis sensory transducer; KEGG: chy:CHY_1296 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3296612 5313321 Amet_3242 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001321039.1 3295275 R 293826 CDS YP_001321040.1 150390991 5313322 complement(3296781..3296915) 1 NC_009633.1 hypothetical protein 3296915 5313322 Amet_3243 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321040.1 3296781 R 293826 CDS YP_001321041.1 150390992 5313323 complement(3296943..3297098) 1 NC_009633.1 hypothetical protein 3297098 5313323 Amet_3244 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321041.1 3296943 R 293826 CDS YP_001321042.1 150390993 5313324 complement(3297737..3299497) 1 NC_009633.1 PFAM: Dynamin family protein; GTP-binding protein, HSR1-related; KEGG: tte:TTE1899 predicted GTPase (dynamin-related); dynamin family protein 3299497 5313324 Amet_3245 Alkaliphilus metalliredigens QYMF dynamin family protein YP_001321042.1 3297737 R 293826 CDS YP_001321043.1 150390994 5313325 complement(3299687..3301054) 1 NC_009633.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: cyb:CYB_2114 magnesium transporter; magnesium transporter 3301054 5313325 Amet_3246 Alkaliphilus metalliredigens QYMF magnesium transporter YP_001321043.1 3299687 R 293826 CDS YP_001321044.1 150390995 5313326 complement(3301907..3302146) 1 NC_009633.1 KEGG: bca:BCE_A0242 Tn554-related, transposase A; Tn554-related, transposase A 3302146 5313326 Amet_3247 Alkaliphilus metalliredigens QYMF Tn554-related, transposase A YP_001321044.1 3301907 R 293826 CDS YP_001321045.1 150390996 5313327 complement(3302635..3302826) 1 NC_009633.1 hypothetical protein 3302826 5313327 Amet_3248 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321045.1 3302635 R 293826 CDS YP_001321046.1 150390997 5313328 complement(3302930..3306658) 1 NC_009633.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; type IV pilus assembly PilZ; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: dsy:DSY3381 hypothetical protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 3306658 5313328 Amet_3249 Alkaliphilus metalliredigens QYMF PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_001321046.1 3302930 R 293826 CDS YP_001321047.1 150390998 5313329 complement(3307037..3307177) 1 NC_009633.1 hypothetical protein 3307177 5313329 Amet_3250 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321047.1 3307037 R 293826 CDS YP_001321048.1 150390999 5313330 complement(3307181..3307609) 1 NC_009633.1 PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: cno:NT01CX_0096 positive regulator of sigma(E), RseC/MucC superfamily; sigma E positive regulator RseC/MucC 3307609 5313330 Amet_3251 Alkaliphilus metalliredigens QYMF sigma E positive regulator RseC/MucC YP_001321048.1 3307181 R 293826 CDS YP_001321049.1 150391000 5313331 complement(3307645..3307854) 1 NC_009633.1 hypothetical protein 3307854 5313331 Amet_3252 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321049.1 3307645 R 293826 CDS YP_001321050.1 150391001 5313332 complement(3307907..3309037) 1 NC_009633.1 PFAM: YibE/F family protein; KEGG: cac:CAC2436 hypothetical protein; hypothetical protein 3309037 5313332 Amet_3253 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321050.1 3307907 R 293826 CDS YP_001321051.1 150391002 5313333 complement(3309093..3309938) 1 NC_009633.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: mta:Moth_1993 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 3309938 5313333 Amet_3254 Alkaliphilus metalliredigens QYMF prolipoprotein diacylglyceryl transferase YP_001321051.1 3309093 R 293826 CDS YP_001321052.1 150391003 5313334 complement(3310144..3311493) 1 NC_009633.1 PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: gsu:GSU1320 sigma-54 dependent DNA-binding response regulator; two component sigma54 specific Fis family transcriptional regulator 3311493 5313334 Amet_3255 Alkaliphilus metalliredigens QYMF two component sigma54 specific Fis family transcriptional regulator YP_001321052.1 3310144 R 293826 CDS YP_001321053.1 150391004 5313335 complement(3311486..3312862) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: ecv:APECO1_4340 sensor protein AtoS; integral membrane sensor signal transduction histidine kinase 3312862 5313335 Amet_3256 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001321053.1 3311486 R 293826 CDS YP_001321054.1 150391005 5313336 complement(3312890..3313144) 1 NC_009633.1 KEGG: ctc:CTC00666 hypothetical protein; hypothetical protein 3313144 5313336 Amet_3257 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321054.1 3312890 R 293826 CDS YP_001321055.1 150391006 5313337 complement(3313403..3314806) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE2473 sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 3314806 5313337 Amet_3258 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001321055.1 3313403 R 293826 CDS YP_001321056.1 150391007 5313338 complement(3314803..3315501) 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE2474 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; two component transcriptional regulator 3315501 5313338 Amet_3259 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001321056.1 3314803 R 293826 CDS YP_001321057.1 150391008 5313339 complement(3315597..3316103) 1 NC_009633.1 hypothetical protein 3316103 5313339 Amet_3260 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321057.1 3315597 R 293826 CDS YP_001321058.1 150391009 5313340 complement(3316549..3317199) 1 NC_009633.1 KEGG: pna:Pnap_4519 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase 3317199 5313340 Amet_3261 Alkaliphilus metalliredigens QYMF isoprenylcysteine carboxyl methyltransferase YP_001321058.1 3316549 R 293826 CDS YP_001321059.1 150391010 5313341 complement(3317414..3318463) 1 NC_009633.1 PFAM: NLP/P60 protein; S-layer domain protein; KEGG: mta:Moth_2104 NLP/P60; NLP/P60 protein 3318463 5313341 Amet_3262 Alkaliphilus metalliredigens QYMF NLP/P60 protein YP_001321059.1 3317414 R 293826 CDS YP_001321060.1 150391011 5313342 complement(3318704..3318877) 1 NC_009633.1 hypothetical protein 3318877 5313342 Amet_3263 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321060.1 3318704 R 293826 CDS YP_001321061.1 150391012 5313343 complement(3318970..3319248) 1 NC_009633.1 hypothetical protein 3319248 5313343 Amet_3264 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321061.1 3318970 R 293826 CDS YP_001321062.1 150391013 5313344 complement(3319410..3319598) 1 NC_009633.1 hypothetical protein 3319598 5313344 Amet_3265 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321062.1 3319410 R 293826 CDS YP_001321063.1 150391014 5313345 complement(3320111..3320413) 1 NC_009633.1 hypothetical protein 3320413 5313345 Amet_3266 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321063.1 3320111 R 293826 CDS YP_001321064.1 150391015 5313346 complement(3320463..3321254) 1 NC_009633.1 Contains selenocysteine; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: gka:GK0592 hypothetical protein; type 11 methyltransferase 3321254 5313346 Amet_3267 Alkaliphilus metalliredigens QYMF type 11 methyltransferase YP_001321064.1 3320463 R 293826 CDS YP_001321065.1 150391016 5313347 complement(3321456..3322001) 1 NC_009633.1 PFAM: SNARE associated Golgi protein; KEGG: ljo:LJ0674 hypothetical protein; hypothetical protein 3322001 5313347 Amet_3268 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321065.1 3321456 R 293826 CDS YP_001321066.1 150391017 5313348 3322433..3322660 1 NC_009633.1 KEGG: mac:MA1327 hypothetical protein; hypothetical protein 3322660 5313348 Amet_3269 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321066.1 3322433 D 293826 CDS YP_001321067.1 150391018 5313350 complement(3323233..3323448) 1 NC_009633.1 PFAM: Heavy metal transport/detoxification protein; KEGG: dsy:DSY4509 hypothetical protein; heavy metal transport/detoxification protein 3323448 5313350 Amet_3271 Alkaliphilus metalliredigens QYMF heavy metal transport/detoxification protein YP_001321067.1 3323233 R 293826 CDS YP_001321068.1 150391019 5313351 complement(3323608..3326088) 1 NC_009633.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: aeh:Mlg_1383 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 3326088 5313351 Amet_3272 Alkaliphilus metalliredigens QYMF heavy metal translocating P-type ATPase YP_001321068.1 3323608 R 293826 CDS YP_001321069.1 150391020 5313352 complement(3326109..3326270) 1 NC_009633.1 hypothetical protein 3326270 5313352 Amet_3273 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321069.1 3326109 R 293826 CDS YP_001321070.1 150391021 5313353 complement(3326456..3327145) 1 NC_009633.1 TIGRFAM: integral membrane protein TIGR01906; PFAM: Integral membrane protein 1906; KEGG: tte:TTE1993 hypothetical protein; hypothetical protein 3327145 5313353 Amet_3274 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321070.1 3326456 R 293826 CDS YP_001321071.1 150391022 5313354 complement(3327261..3328277) 1 NC_009633.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: mfa:Mfla_2304 40-residue YVTN beta-propeller repeat; hypothetical protein 3328277 5313354 Amet_3275 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321071.1 3327261 R 293826 CDS YP_001321072.1 150391023 5313355 complement(3328305..3328895) 1 NC_009633.1 hypothetical protein 3328895 5313355 Amet_3276 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321072.1 3328305 R 293826 CDS YP_001321073.1 150391024 5313356 complement(3329008..3329250) 1 NC_009633.1 hypothetical protein 3329250 5313356 Amet_3277 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321073.1 3329008 R 293826 CDS YP_001321074.1 150391025 5313357 complement(3329251..3329421) 1 NC_009633.1 hypothetical protein 3329421 5313357 Amet_3278 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321074.1 3329251 R 293826 CDS YP_001321075.1 150391026 5313358 complement(3329809..3330426) 1 NC_009633.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ajs:Ajs_2160 methyltransferase type 11; type 11 methyltransferase 3330426 5313358 Amet_3279 Alkaliphilus metalliredigens QYMF type 11 methyltransferase YP_001321075.1 3329809 R 293826 CDS YP_001321076.1 150391027 5313359 complement(3330499..3331821) 1 NC_009633.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_2566 radical SAM; radical SAM domain-containing protein 3331821 5313359 Amet_3280 Alkaliphilus metalliredigens QYMF radical SAM domain-containing protein YP_001321076.1 3330499 R 293826 CDS YP_001321077.1 150391028 5313361 3332333..3333028 1 NC_009633.1 PFAM: manganese containing catalase; KEGG: cac:CAC2800 CotJC-like protein (GS80 family); catalase 3333028 5313361 Amet_3282 Alkaliphilus metalliredigens QYMF catalase YP_001321077.1 3332333 D 293826 CDS YP_001321078.1 150391029 5313363 complement(3333461..3333703) 1 NC_009633.1 hypothetical protein 3333703 5313363 Amet_3284 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321078.1 3333461 R 293826 CDS YP_001321079.1 150391030 5313365 complement(3334847..3336034) 1 NC_009633.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: tte:TTE0042 HD-GYP domain; metal dependent phosphohydrolase 3336034 5313365 Amet_3286 Alkaliphilus metalliredigens QYMF metal dependent phosphohydrolase YP_001321079.1 3334847 R 293826 CDS YP_001321080.1 150391031 5313369 complement(3339910..3340353) 1 NC_009633.1 SMART: Rhodanese domain protein; KEGG: ppr:PBPRA1240 putative thiosulfate sulfur transferase; rhodanese domain-containing protein 3340353 5313369 Amet_3290 Alkaliphilus metalliredigens QYMF rhodanese domain-containing protein YP_001321080.1 3339910 R 293826 CDS YP_001321081.1 150391032 5313370 complement(3340384..3341154) 1 NC_009633.1 PFAM: Rhodanese domain protein; KEGG: cpr:CPR_1124 putative thiosulfate sulfurtransferase; rhodanese domain-containing protein 3341154 5313370 Amet_3291 Alkaliphilus metalliredigens QYMF rhodanese domain-containing protein YP_001321081.1 3340384 R 293826 CDS YP_001321082.1 150391033 5313371 complement(3341515..3342540) 1 NC_009633.1 PFAM: ABC transporter related; transport-associated protein OB domain protein; SMART: AAA ATPase; KEGG: cpe:CPE1270 probable ABC transporter; ABC transporter-like protein 3342540 5313371 Amet_3292 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321082.1 3341515 R 293826 CDS YP_001321083.1 150391034 5313372 complement(3342575..3343384) 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nca:Noca_2070 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3343384 5313372 Amet_3293 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001321083.1 3342575 R 293826 CDS YP_001321084.1 150391035 5313373 complement(3343392..3344255) 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0308 ABC transporter, permease protein, putative; binding-protein-dependent transport system inner membrane protein 3344255 5313373 Amet_3294 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001321084.1 3343392 R 293826 CDS YP_001321085.1 150391036 5313374 complement(3344269..3345522) 1 NC_009633.1 KEGG: dde:Dde_0759 extracellular solute-binding protein, putative; putative ABC transporter solute-binding protein 3345522 5313374 Amet_3295 Alkaliphilus metalliredigens QYMF putative ABC transporter solute-binding protein YP_001321085.1 3344269 R 293826 CDS YP_001321086.1 150391037 5313375 complement(3345619..3346212) 1 NC_009633.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cpf:CPF_0561 CDP-alcohol phosphatidyltransferase family protein; CDP-alcohol phosphatidyltransferase 3346212 5313375 Amet_3296 Alkaliphilus metalliredigens QYMF CDP-alcohol phosphatidyltransferase YP_001321086.1 3345619 R 293826 CDS YP_001321087.1 150391038 5313376 complement(3346266..3347057) 1 NC_009633.1 PFAM: SNARE associated Golgi protein; KEGG: dsy:DSY2706 hypothetical protein; hypothetical protein 3347057 5313376 Amet_3297 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321087.1 3346266 R 293826 CDS YP_001321088.1 150391039 5313377 complement(3347142..3348356) 1 NC_009633.1 PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: cpr:CPR_2072 cysteine-rich domain protein; hypothetical protein 3348356 5313377 Amet_3298 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321088.1 3347142 R 293826 CDS YP_001321089.1 150391040 5313378 complement(3348645..3349136) 1 NC_009633.1 SMART: Rhodanese domain protein; KEGG: mac:MA0746 hypothetical protein; rhodanese domain-containing protein 3349136 5313378 Amet_3299 Alkaliphilus metalliredigens QYMF rhodanese domain-containing protein YP_001321089.1 3348645 R 293826 CDS YP_001321090.1 150391041 5313379 complement(3349606..3350391) 1 NC_009633.1 PFAM: protein of unknown function DUF450; KEGG: mma:MM2204 putative type I restriction enzyme R protein; hypothetical protein 3350391 5313379 Amet_3300 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321090.1 3349606 R 293826 CDS YP_001321091.1 150391042 5313380 complement(3350412..3351419) 1 NC_009633.1 KEGG: tde:TDE0367 hypothetical protein; hypothetical protein 3351419 5313380 Amet_3301 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321091.1 3350412 R 293826 CDS YP_001321092.1 150391043 5313381 complement(3351443..3351646) 1 NC_009633.1 KEGG: zmo:ZMO0901 hypothetical protein; hypothetical protein 3351646 5313381 Amet_3302 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321092.1 3351443 R 293826 CDS YP_001321093.1 150391044 5313384 complement(3354800..3355438) 1 NC_009633.1 PFAM: TrkA-N domain protein; KEGG: cpr:CPR_1854 potassium uptake protein; TrkA domain-containing protein 3355438 5313384 Amet_3305 Alkaliphilus metalliredigens QYMF TrkA domain-containing protein YP_001321093.1 3354800 R 293826 CDS YP_001321094.1 150391045 5313385 complement(3355435..3355896) 1 NC_009633.1 hypothetical protein 3355896 5313385 Amet_3306 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321094.1 3355435 R 293826 CDS YP_001321095.1 150391046 5313386 complement(3355897..3356592) 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dsy:DSY3761 hypothetical protein; two component transcriptional regulator 3356592 5313386 Amet_3307 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001321095.1 3355897 R 293826 CDS YP_001321096.1 150391047 5313387 complement(3356592..3357977) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: dsy:DSY3762 hypothetical protein; integral membrane sensor signal transduction histidine kinase 3357977 5313387 Amet_3308 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001321096.1 3356592 R 293826 CDS YP_001321097.1 150391048 5313388 complement(3358051..3358713) 1 NC_009633.1 PFAM: TrkA-N domain protein; KEGG: cth:Cthe_1659 TrkA-N; TrkA domain-containing protein 3358713 5313388 Amet_3309 Alkaliphilus metalliredigens QYMF TrkA domain-containing protein YP_001321097.1 3358051 R 293826 CDS YP_001321098.1 150391049 5313389 complement(3358739..3360091) 1 NC_009633.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: cth:Cthe_1658 potassium uptake protein, TrkH family; TrkH family potassium uptake protein 3360091 5313389 Amet_3310 Alkaliphilus metalliredigens QYMF TrkH family potassium uptake protein YP_001321098.1 3358739 R 293826 CDS YP_001321099.1 150391050 5313390 complement(3360063..3360515) 1 NC_009633.1 hypothetical protein 3360515 5313390 Amet_3311 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321099.1 3360063 R 293826 CDS YP_001321100.1 150391051 5313393 complement(3362495..3363811) 1 NC_009633.1 PFAM: Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ctc:CTC02311 transport protein (putative Na+/H+ antiporter, similar to hisidine permease); Na+/H+ antiporter NhaC 3363811 5313393 Amet_3313 Alkaliphilus metalliredigens QYMF Na+/H+ antiporter NhaC YP_001321100.1 3362495 R 293826 CDS YP_001321101.1 150391052 5313394 complement(3364035..3364529) 1 NC_009633.1 PFAM: PspC domain protein; KEGG: dsy:DSY4047 hypothetical protein; phage shock protein PspC 3364529 5313394 Amet_3314 Alkaliphilus metalliredigens QYMF phage shock protein PspC YP_001321101.1 3364035 R 293826 CDS YP_001321102.1 150391053 5313395 complement(3364620..3364808) 1 NC_009633.1 hypothetical protein 3364808 5313395 Amet_3315 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321102.1 3364620 R 293826 CDS YP_001321103.1 150391054 5313396 complement(3365200..3365808) 1 NC_009633.1 PFAM: protein of unknown function DUF624; KEGG: bha:BH2108 hypothetical protein; hypothetical protein 3365808 5313396 Amet_3316 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321103.1 3365200 R 293826 CDS YP_001321104.1 150391055 5313397 complement(3365981..3367606) 1 NC_009633.1 PFAM: glycoside hydrolase, family 43; KEGG: oih:OB3125 xylan 1,4-beta-xylosidase; alpha-N-arabinofuranosidase 3367606 5313397 Amet_3317 Alkaliphilus metalliredigens QYMF alpha-N-arabinofuranosidase YP_001321104.1 3365981 R 293826 CDS YP_001321105.1 150391056 5313398 complement(3367696..3368598) 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3682 multiple sugar transport system permease protein; binding-protein-dependent transport system inner membrane protein 3368598 5313398 Amet_3318 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001321105.1 3367696 R 293826 CDS YP_001321106.1 150391057 5313399 complement(3368610..3369488) 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3681 multiple sugar transport system permease protein; binding-protein-dependent transport system inner membrane protein 3369488 5313399 Amet_3319 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001321106.1 3368610 R 293826 CDS YP_001321107.1 150391058 5313400 complement(3369660..3370985) 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bha:BH3680 multiple sugar transport system substrate-binding protein; extracellular solute-binding protein 3370985 5313400 Amet_3320 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001321107.1 3369660 R 293826 CDS YP_001321108.1 150391059 5313401 complement(3371089..3371880) 1 NC_009633.1 PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: bha:BH3679 two-component response regulator; response regulator receiver protein 3371880 5313401 Amet_3321 Alkaliphilus metalliredigens QYMF response regulator receiver protein YP_001321108.1 3371089 R 293826 CDS YP_001321109.1 150391060 5313402 complement(3371893..3373629) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase internal region; KEGG: bha:BH3678 two-component sensor histidine kinase; histidine kinase internal subunit 3373629 5313402 Amet_3322 Alkaliphilus metalliredigens QYMF histidine kinase internal subunit YP_001321109.1 3371893 R 293826 CDS YP_001321110.1 150391061 5313403 3374138..3375247 1 NC_009633.1 PFAM: ABC transporter related; TOBE domain protein; transport-associated protein OB domain protein; SMART: AAA ATPase; KEGG: tte:TTE1979 ABC-type sugar/spermidine/putrescine/iron/thiamine transport systems, ATPase component; ABC transporter-like protein 3375247 5313403 Amet_3323 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321110.1 3374138 D 293826 CDS YP_001321111.1 150391062 5313404 3375307..3376359 1 NC_009633.1 KEGG: cth:Cthe_1861 transcriptional regulator, CdaR; transcriptional regulator CdaR 3376359 5313404 Amet_3324 Alkaliphilus metalliredigens QYMF transcriptional regulator CdaR YP_001321111.1 3375307 D 293826 CDS YP_001321112.1 150391063 5313405 complement(3376475..3377389) 1 NC_009633.1 PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin; KEGG: oih:OB0530 carboxypeptidase; peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin 3377389 5313405 Amet_3325 Alkaliphilus metalliredigens QYMF peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin YP_001321112.1 3376475 R 293826 CDS YP_001321113.1 150391064 5313406 complement(3377501..3378109) 1 NC_009633.1 TIGRFAM: xanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: cpr:CPR_0313 xanthine phosphoribosyltransferase; xanthine phosphoribosyltransferase 3378109 5313406 Amet_3326 Alkaliphilus metalliredigens QYMF xanthine phosphoribosyltransferase YP_001321113.1 3377501 R 293826 CDS YP_001321114.1 150391065 5313407 complement(3378512..3379528) 1 NC_009633.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: pfu:PF0194 dipeptide ABC transporter, ATP-binding protein; oligopeptide/dipeptide ABC transporter ATPase 3379528 5313407 Amet_3327 Alkaliphilus metalliredigens QYMF oligopeptide/dipeptide ABC transporter ATPase YP_001321114.1 3378512 R 293826 CDS YP_001321115.1 150391066 5313408 complement(3379528..3380571) 1 NC_009633.1 TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_4402 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; oligopeptide/dipeptide ABC transporter ATPase 3380571 5313408 Amet_3328 Alkaliphilus metalliredigens QYMF oligopeptide/dipeptide ABC transporter ATPase YP_001321115.1 3379528 R 293826 CDS YP_001321116.1 150391067 5313409 complement(3380574..3381500) 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_4403 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3381500 5313409 Amet_3329 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001321116.1 3380574 R 293826 CDS YP_001321117.1 150391068 5313410 complement(3381531..3382502) 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_4405 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 3382502 5313410 Amet_3330 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001321117.1 3381531 R 293826 CDS YP_001321118.1 150391069 5313411 complement(3382606..3384264) 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 5; KEGG: pol:Bpro_4406 twin-arginine translocation pathway signal; extracellular solute-binding protein 3384264 5313411 Amet_3331 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001321118.1 3382606 R 293826 CDS YP_001321119.1 150391070 5313412 complement(3384535..3385116) 1 NC_009633.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: cth:Cthe_0614 pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate ferredoxin/flavodoxin oxidoreductase 3385116 5313412 Amet_3332 Alkaliphilus metalliredigens QYMF pyruvate ferredoxin/flavodoxin oxidoreductase YP_001321119.1 3384535 R 293826 CDS YP_001321120.1 150391071 5313413 complement(3385109..3386923) 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: swo:Swol_1196 thiamine pyrophosphate enzyme; indolepyruvate ferredoxin oxidoreductase 3386923 5313413 Amet_3333 Alkaliphilus metalliredigens QYMF indolepyruvate ferredoxin oxidoreductase YP_001321120.1 3385109 R 293826 CDS YP_001321121.1 150391072 5313414 3387184..3388209 1 NC_009633.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 3388209 5313414 Amet_3334 Alkaliphilus metalliredigens QYMF branched-chain amino acid aminotransferase YP_001321121.1 3387184 D 293826 CDS YP_001321122.1 150391073 5313415 complement(3388307..3389170) 1 NC_009633.1 PFAM: PP-loop domain protein; KEGG: cpr:CPR_1477 PP-loop family protein; PP-loop domain-containing protein 3389170 5313415 Amet_3335 Alkaliphilus metalliredigens QYMF PP-loop domain-containing protein YP_001321122.1 3388307 R 293826 CDS YP_001321123.1 150391074 5313416 3389392..3390948 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC00588 ABC transporter ATP-binding protein; ABC transporter-like protein 3390948 5313416 Amet_3336 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321123.1 3389392 D 293826 CDS YP_001321124.1 150391075 5313417 complement(3391041..3391289) 1 NC_009633.1 hypothetical protein 3391289 5313417 Amet_3337 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321124.1 3391041 R 293826 CDS YP_001321125.1 150391076 5313418 3391510..3392586 1 NC_009633.1 PFAM: creatinase; peptidase M24; KEGG: cpe:CPE2497 probable proline dipeptidase; peptidase M24 3392586 5313418 Amet_3338 Alkaliphilus metalliredigens QYMF peptidase M24 YP_001321125.1 3391510 D 293826 CDS YP_001321126.1 150391077 5313419 3392782..3392922 1 NC_009633.1 YBDT Bacillus subtilis ortholog; KEGG: cac:CAC3330 cytochrome P450 family protein, YBDT B.subtilis ortholog; cytochrome P450 family protein 3392922 5313419 Amet_3339 Alkaliphilus metalliredigens QYMF cytochrome P450 family protein YP_001321126.1 3392782 D 293826 CDS YP_001321127.1 150391078 5313420 complement(3393010..3393372) 1 NC_009633.1 KEGG: sth:STH2800 hypothetical protein; hypothetical protein 3393372 5313420 Amet_3340 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321127.1 3393010 R 293826 CDS YP_001321128.1 150391079 5313421 complement(3393372..3393548) 1 NC_009633.1 hypothetical protein 3393548 5313421 Amet_3341 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321128.1 3393372 R 293826 CDS YP_001321129.1 150391080 5313422 complement(3393548..3393748) 1 NC_009633.1 KEGG: bha:BH1975 hypothetical protein; hypothetical protein 3393748 5313422 Amet_3342 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321129.1 3393548 R 293826 CDS YP_001321130.1 150391081 5313423 complement(3393735..3394676) 1 NC_009633.1 KEGG: bha:BH1976 hypothetical protein; hypothetical protein 3394676 5313423 Amet_3343 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321130.1 3393735 R 293826 CDS YP_001321131.1 150391082 5313424 3394937..3397264 1 NC_009633.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: bha:BH1977 hypothetical protein; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 3397264 5313424 Amet_3344 Alkaliphilus metalliredigens QYMF molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001321131.1 3394937 D 293826 CDS YP_001321132.1 150391083 5313425 3397261..3398103 1 NC_009633.1 PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: bha:BH1977 hypothetical protein; FAD-binding molybdopterin dehydrogenase 3398103 5313425 Amet_3345 Alkaliphilus metalliredigens QYMF FAD-binding molybdopterin dehydrogenase YP_001321132.1 3397261 D 293826 CDS YP_001321133.1 150391084 5313426 3398096..3398560 1 NC_009633.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bha:BH1978 hypothetical protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 3398560 5313426 Amet_3346 Alkaliphilus metalliredigens QYMF 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001321133.1 3398096 D 293826 CDS YP_001321134.1 150391085 5313427 complement(3398639..3398911) 1 NC_009633.1 KEGG: bha:BH1979 hypothetical protein; hypothetical protein 3398911 5313427 Amet_3347 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321134.1 3398639 R 293826 CDS YP_001321135.1 150391086 5313428 complement(3399305..3401485) 1 NC_009633.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 3401485 5313428 Amet_3348 Alkaliphilus metalliredigens QYMF DNA topoisomerase III YP_001321135.1 3399305 R 293826 CDS YP_001321136.1 150391087 5313429 complement(3401617..3402294) 1 NC_009633.1 PFAM: Abortive infection protein; KEGG: ana:alr7029 unknown protein; abortive infection protein 3402294 5313429 Amet_3349 Alkaliphilus metalliredigens QYMF abortive infection protein YP_001321136.1 3401617 R 293826 CDS YP_001321137.1 150391088 5313430 complement(3402451..3404100) 1 NC_009633.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bcz:BCZK2223 ATP-dependent RNA helicase; DEAD/DEAH box helicase 3404100 5313430 Amet_3350 Alkaliphilus metalliredigens QYMF DEAD/DEAH box helicase YP_001321137.1 3402451 R 293826 CDS YP_001321138.1 150391089 5313431 complement(3404562..3405236) 1 NC_009633.1 PFAM: Abortive infection protein; KEGG: bcz:BCZK4727 CAAX amino terminal protease family protein; abortive infection protein 3405236 5313431 Amet_3351 Alkaliphilus metalliredigens QYMF abortive infection protein YP_001321138.1 3404562 R 293826 CDS YP_001321139.1 150391090 5313432 complement(3405440..3406138) 1 NC_009633.1 hypothetical protein 3406138 5313432 Amet_3352 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321139.1 3405440 R 293826 CDS YP_001321140.1 150391091 5313433 complement(3406320..3406817) 1 NC_009633.1 hypothetical protein 3406817 5313433 Amet_3353 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321140.1 3406320 R 293826 CDS YP_001321141.1 150391092 5313434 complement(3407037..3407267) 1 NC_009633.1 hypothetical protein 3407267 5313434 Amet_3354 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321141.1 3407037 R 293826 CDS YP_001321142.1 150391093 5313435 3407832..3408038 1 NC_009633.1 PFAM: protein of unknown function UPF0150; KEGG: mta:Moth_0249 hypothetical protein; hypothetical protein 3408038 5313435 Amet_3355 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321142.1 3407832 D 293826 CDS YP_001321143.1 150391094 5313436 3408038..3408265 1 NC_009633.1 PFAM: YcfA family protein; KEGG: mta:Moth_0250 YcfA-like; hypothetical protein 3408265 5313436 Amet_3356 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321143.1 3408038 D 293826 CDS YP_001321144.1 150391095 5313437 complement(3408473..3409363) 1 NC_009633.1 PFAM: Streptomycin adenylyltransferase; KEGG: bce:BC1959 aminoglycoside 6-adenylyltransferase; adenylyltransferase 3409363 5313437 Amet_3357 Alkaliphilus metalliredigens QYMF adenylyltransferase YP_001321144.1 3408473 R 293826 CDS YP_001321145.1 150391096 5313438 complement(3409666..3410181) 1 NC_009633.1 KEGG: pab:PAB1336 methyl-accepting chemotaxis protein; hypothetical protein 3410181 5313438 Amet_3358 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321145.1 3409666 R 293826 CDS YP_001321146.1 150391097 5313439 complement(3410348..3411352) 1 NC_009633.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: mac:MA4626 reverse transcriptase; RNA-directed DNA polymerase 3411352 5313439 Amet_3359 Alkaliphilus metalliredigens QYMF RNA-directed DNA polymerase YP_001321146.1 3410348 R 293826 CDS YP_001321147.1 150391098 5313440 3411912..3413969 1 NC_009633.1 PFAM: Resolvase, N-terminal domain; KEGG: fra:Francci3_2088 recombinase; resolvase domain-containing protein 3413969 5313440 Amet_3360 Alkaliphilus metalliredigens QYMF resolvase domain-containing protein YP_001321147.1 3411912 D 293826 CDS YP_001321148.1 150391099 5313441 complement(3413927..3414370) 1 NC_009633.1 KEGG: mac:MA4628 reverse transcriptase; hypothetical protein 3414370 5313441 Amet_3361 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321148.1 3413927 R 293826 CDS YP_001321149.1 150391100 5313442 complement(3415638..3416369) 1 NC_009633.1 KEGG: sfu:Sfum_3865 hypothetical protein; hypothetical protein 3416369 5313442 Amet_3362 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321149.1 3415638 R 293826 CDS YP_001321150.1 150391101 5313443 complement(3416815..3417999) 1 NC_009633.1 PFAM: putative transposase; KEGG: aeh:Mlg_1798 putative transposase; putative transposase 3417999 5313443 Amet_3363 Alkaliphilus metalliredigens QYMF putative transposase YP_001321150.1 3416815 R 293826 CDS YP_001321151.1 150391102 5313444 3418352..3418576 1 NC_009633.1 PFAM: SpoVT/AbrB domain protein; KEGG: sru:SRU_2815 putative addiction module antidote; transcriptional regulator/antitoxin MazE 3418576 5313444 Amet_3364 Alkaliphilus metalliredigens QYMF transcriptional regulator/antitoxin MazE YP_001321151.1 3418352 D 293826 CDS YP_001321152.1 150391103 5313445 3418573..3418965 1 NC_009633.1 TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: ana:alr9029 putative death on curing protein; death-on-curing family protein 3418965 5313445 Amet_3365 Alkaliphilus metalliredigens QYMF death-on-curing family protein YP_001321152.1 3418573 D 293826 CDS YP_001321153.1 150391104 5313446 complement(3419161..3419724) 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bce:BC2992 ribosomal-protein-alanine acetyltransferase; N-acetyltransferase GCN5 3419724 5313446 Amet_3366 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001321153.1 3419161 R 293826 CDS YP_001321154.1 150391105 5313447 complement(3420097..3420615) 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: oih:OB2857 hypothetical protein; N-acetyltransferase GCN5 3420615 5313447 Amet_3367 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001321154.1 3420097 R 293826 CDS YP_001321155.1 150391106 5313448 complement(3420835..3421851) 1 NC_009633.1 hypothetical protein 3421851 5313448 Amet_3368 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321155.1 3420835 R 293826 CDS YP_001321156.1 150391107 5313449 3422044..3422400 1 NC_009633.1 PFAM: protein of unknown function DUF891; KEGG: hin:HI0660 hypothetical protein; hypothetical protein 3422400 5313449 Amet_3369 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321156.1 3422044 D 293826 CDS YP_001321157.1 150391108 5313450 3422403..3422672 1 NC_009633.1 PFAM: helix-turn-helix domain protein; KEGG: gme:Gmet_0315 transcriptional regulator, XRE family; XRE family transcriptional regulator 3422672 5313450 Amet_3370 Alkaliphilus metalliredigens QYMF XRE family transcriptional regulator YP_001321157.1 3422403 D 293826 CDS YP_001321158.1 150391109 5313451 3423179..3424765 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0281 ABC transporter, ATP-binding protein; ABC transporter-like protein 3424765 5313451 Amet_3371 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321158.1 3423179 D 293826 CDS YP_001321159.1 150391110 5313452 complement(3424917..3426851) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_2868 ABC transporter, ATP-binding protein; ABC transporter-like protein 3426851 5313452 Amet_3372 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321159.1 3424917 R 293826 CDS YP_001321160.1 150391111 5313453 complement(3426921..3429290) 1 NC_009633.1 PFAM: dihydropteroate synthase, DHPS; homocysteine S-methyltransferase; Methionine synthase, B12-binding module, cap domain protein; cobalamin B12-binding domain protein; KEGG: ctc:CTC01806 5-methyltetrahydrofolate--homocysteine methyltransferase; homocysteine S-methyltransferase 3429290 5313453 Amet_3373 Alkaliphilus metalliredigens QYMF homocysteine S-methyltransferase YP_001321160.1 3426921 R 293826 CDS YP_001321161.1 150391112 5313454 complement(3429268..3429948) 1 NC_009633.1 PFAM: Vitamin B12 dependent methionine synthase, activation region; KEGG: ctc:CTC01807 putative 5-methyltetrahydrofolate--homocysteine methyltransferase; vitamin B12 dependent methionine synthase, activation region 3429948 5313454 Amet_3374 Alkaliphilus metalliredigens QYMF vitamin B12 dependent methionine synthase, activation region YP_001321161.1 3429268 R 293826 CDS YP_001321162.1 150391113 5313455 complement(3429972..3430856) 1 NC_009633.1 PFAM: methylenetetrahydrofolate reductase; KEGG: cth:Cthe_0099 5,10-methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase 3430856 5313455 Amet_3375 Alkaliphilus metalliredigens QYMF methylenetetrahydrofolate reductase YP_001321162.1 3429972 R 293826 CDS YP_001321163.1 150391114 5313456 complement(3430870..3432147) 1 NC_009633.1 TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aminotransferase, class I and II; KEGG: lmf:LMOf2365_0624 O-acetylhomoserine (thiol)-lyase; O-acetylhomoserine/O-acetylserine sulfhydrylase 3432147 5313456 Amet_3376 Alkaliphilus metalliredigens QYMF O-acetylhomoserine/O-acetylserine sulfhydrylase YP_001321163.1 3430870 R 293826 CDS YP_001321164.1 150391115 5313457 3432842..3433804 1 NC_009633.1 PFAM: SCP-like extracellular protein; KEGG: bha:BH2878 hypothetical protein; SCP-like extracellular protein 3433804 5313457 Amet_3377 Alkaliphilus metalliredigens QYMF SCP-like extracellular protein YP_001321164.1 3432842 D 293826 CDS YP_001321165.1 150391116 5313458 complement(3433914..3437141) 1 NC_009633.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: tte:TTE0816 Carbamoylphosphate synthase large subunit (split gene in MJ); carbamoyl-phosphate synthase large subunit 3437141 5313458 Amet_3378 Alkaliphilus metalliredigens QYMF carbamoyl-phosphate synthase large subunit YP_001321165.1 3433914 R 293826 CDS YP_001321166.1 150391117 5313459 complement(3437186..3438268) 1 NC_009633.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: cth:Cthe_0950 carbamoyl-phosphate synthase, small subunit; carbamoyl-phosphate synthase small subunit 3438268 5313459 Amet_3379 Alkaliphilus metalliredigens QYMF carbamoyl-phosphate synthase small subunit YP_001321166.1 3437186 R 293826 CDS YP_001321167.1 150391118 5313460 complement(3438268..3439467) 1 NC_009633.1 TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: mta:Moth_2287 acetylornithine and succinylornithine aminotransferases; acetylornithine and succinylornithine aminotransferase 3439467 5313460 Amet_3380 Alkaliphilus metalliredigens QYMF acetylornithine and succinylornithine aminotransferase YP_001321167.1 3438268 R 293826 CDS YP_001321168.1 150391119 5313461 complement(3439382..3440332) 1 NC_009633.1 TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: mta:Moth_2288 acetylglutamate kinase; acetylglutamate kinase 3440332 5313461 Amet_3381 Alkaliphilus metalliredigens QYMF acetylglutamate kinase YP_001321168.1 3439382 R 293826 CDS YP_001321169.1 150391120 5313462 complement(3440345..3441565) 1 NC_009633.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 3441565 argJ 5313462 argJ Alkaliphilus metalliredigens QYMF bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_001321169.1 3440345 R 293826 CDS YP_001321170.1 150391121 5313463 complement(3441594..3442634) 1 NC_009633.1 TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; KEGG: dsy:DSY0760 hypothetical protein; N-acetyl-gamma-glutamyl-phosphate reductase 3442634 5313463 Amet_3383 Alkaliphilus metalliredigens QYMF N-acetyl-gamma-glutamyl-phosphate reductase YP_001321170.1 3441594 R 293826 CDS YP_001321171.1 150391122 5313464 complement(3442912..3443367) 1 NC_009633.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: bfs:BF3378 putative peptide methionine sulfoxide reductase; methionine-R-sulfoxide reductase 3443367 5313464 Amet_3384 Alkaliphilus metalliredigens QYMF methionine-R-sulfoxide reductase YP_001321171.1 3442912 R 293826 CDS YP_001321172.1 150391123 5313465 complement(3443516..3444088) 1 NC_009633.1 PFAM: response regulator receiver; ANTAR domain protein; KEGG: mta:Moth_1295 response regulator receiver (CheY-like) and ANTAR domain protein; response regulator receiver/ANTAR domain-containing protein 3444088 5313465 Amet_3385 Alkaliphilus metalliredigens QYMF response regulator receiver/ANTAR domain-containing protein YP_001321172.1 3443516 R 293826 CDS YP_001321173.1 150391124 5313466 complement(3444192..3445517) 1 NC_009633.1 TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; KEGG: mta:Moth_1294 glutamine synthetase, type I; glutamine synthetase, type I 3445517 5313466 Amet_3386 Alkaliphilus metalliredigens QYMF glutamine synthetase, type I YP_001321173.1 3444192 R 293826 CDS YP_001321174.1 150391125 5313467 complement(3445761..3447191) 1 NC_009633.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 3447191 gatB 5313467 gatB Alkaliphilus metalliredigens QYMF aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001321174.1 3445761 R 293826 CDS YP_001321175.1 150391126 5313468 complement(3447194..3448669) 1 NC_009633.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 3448669 gatA 5313468 gatA Alkaliphilus metalliredigens QYMF aspartyl/glutamyl-tRNA amidotransferase subunit A YP_001321175.1 3447194 R 293826 CDS YP_001321176.1 150391127 5313469 complement(3448709..3448993) 1 NC_009633.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; KEGG: cac:CAC2978 Glu-tRNA amidotransferase, subunit C; glutamyl-tRNA(Gln) amidotransferase subunit C 3448993 5313469 Amet_3389 Alkaliphilus metalliredigens QYMF glutamyl-tRNA(Gln) amidotransferase subunit C YP_001321176.1 3448709 R 293826 CDS YP_001321177.1 150391128 5313470 complement(3449009..3450307) 1 NC_009633.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 3450307 aspC 5313470 aspC Alkaliphilus metalliredigens QYMF aspartyl-tRNA synthetase YP_001321177.1 3449009 R 293826 CDS YP_001321178.1 150391129 5313471 complement(3450797..3451159) 1 NC_009633.1 PFAM: nitrogen regulatory protein P-II; KEGG: cac:CAC0681 nitrogen regulatory protein PII, gene nrgB; nitrogen regulatory protein P-II 3451159 5313471 Amet_3391 Alkaliphilus metalliredigens QYMF nitrogen regulatory protein P-II YP_001321178.1 3450797 R 293826 CDS YP_001321179.1 150391130 5313472 complement(3451229..3452485) 1 NC_009633.1 TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: bth:BT_0544 ammonium transporter; ammonium transporter 3452485 5313472 Amet_3392 Alkaliphilus metalliredigens QYMF ammonium transporter YP_001321179.1 3451229 R 293826 CDS YP_001321180.1 150391131 5313473 3452873..3454084 1 NC_009633.1 PFAM: phosphoesterase, DHHA1; Threonyl/alanyl tRNA synthetase, SAD; KEGG: cpf:CPF_0714 DHHA1 domain protein; threonyl/alanyl tRNA synthetase 3454084 5313473 Amet_3393 Alkaliphilus metalliredigens QYMF threonyl/alanyl tRNA synthetase YP_001321180.1 3452873 D 293826 CDS YP_001321181.1 150391132 5313474 complement(3454214..3455335) 1 NC_009633.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bcz:pE33L466_0272 transposase; IS605 family transposase OrfB 3455335 5313474 Amet_3394 Alkaliphilus metalliredigens QYMF IS605 family transposase OrfB YP_001321181.1 3454214 R 293826 CDS YP_001321182.1 150391133 5313475 complement(3455332..3455817) 1 NC_009633.1 PFAM: transposase IS200-family protein; KEGG: ctc:CTC00621 transposase; transposase IS200-family protein 3455817 5313475 Amet_3395 Alkaliphilus metalliredigens QYMF transposase IS200-family protein YP_001321182.1 3455332 R 293826 CDS YP_001321183.1 150391134 5313476 complement(3455943..3456908) 1 NC_009633.1 PFAM: Auxin Efflux Carrier; KEGG: ssp:SSP0142 putative permease; auxin efflux carrier 3456908 5313476 Amet_3396 Alkaliphilus metalliredigens QYMF auxin efflux carrier YP_001321183.1 3455943 R 293826 CDS YP_001321184.1 150391135 5313477 complement(3457185..3461678) 1 NC_009633.1 PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: cac:CAC1673 large subunit of NADH-dependent glutamate synthase; glutamate synthase 3461678 5313477 Amet_3397 Alkaliphilus metalliredigens QYMF glutamate synthase YP_001321184.1 3457185 R 293826 CDS YP_001321185.1 150391136 5313478 3462501..3462770 1 NC_009633.1 PFAM: amino acid-binding ACT domain protein; KEGG: cth:Cthe_0409 ACT domain-containing protein; ACT domain-containing protein 3462770 5313478 Amet_3398 Alkaliphilus metalliredigens QYMF ACT domain-containing protein YP_001321185.1 3462501 D 293826 CDS YP_001321186.1 150391137 5313479 3462791..3464149 1 NC_009633.1 PFAM: protein of unknown function DUF711; KEGG: ctc:CTC01034 hypothetical protein; hypothetical protein 3464149 5313479 Amet_3399 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321186.1 3462791 D 293826 CDS YP_001321187.1 150391138 5313480 complement(3464288..3465952) 1 NC_009633.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein, central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: cth:Cthe_2714 acetolactate synthase, large subunit, biosynthetic type; acetolactate synthase large subunit 3465952 5313480 Amet_3400 Alkaliphilus metalliredigens QYMF acetolactate synthase large subunit YP_001321187.1 3464288 R 293826 CDS YP_001321188.1 150391139 5313481 complement(3465971..3467629) 1 NC_009633.1 TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: cth:Cthe_2713 dihydroxy-acid dehydratase; dihydroxy-acid dehydratase 3467629 5313481 Amet_3401 Alkaliphilus metalliredigens QYMF dihydroxy-acid dehydratase YP_001321188.1 3465971 R 293826 CDS YP_001321189.1 150391140 5313482 complement(3467665..3468666) 1 NC_009633.1 TIGRFAM: ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase; Acetohydroxy acid isomeroreductase, catalytic domain protein; KEGG: tte:TTE0015 Ketol-acid reductoisomerase; ketol-acid reductoisomerase 3468666 5313482 Amet_3402 Alkaliphilus metalliredigens QYMF ketol-acid reductoisomerase YP_001321189.1 3467665 R 293826 CDS YP_001321190.1 150391141 5313483 complement(3468743..3469222) 1 NC_009633.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: cth:Cthe_2517 acetolactate synthase, small subunit; acetolactate synthase small subunit 3469222 5313483 Amet_3403 Alkaliphilus metalliredigens QYMF acetolactate synthase small subunit YP_001321190.1 3468743 R 293826 CDS YP_001321191.1 150391142 5313484 3470176..3471420 1 NC_009633.1 catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 3471420 5313484 Amet_3404 Alkaliphilus metalliredigens QYMF threonine dehydratase YP_001321191.1 3470176 D 293826 CDS YP_001321192.1 150391143 5313485 3471728..3473185 1 NC_009633.1 PFAM: Collagen triple helix repeat; KEGG: ter:Tery_0397 phage tail collar; triple helix repeat-containing collagen 3473185 5313485 Amet_3405 Alkaliphilus metalliredigens QYMF triple helix repeat-containing collagen YP_001321192.1 3471728 D 293826 CDS YP_001321193.1 150391144 5313486 3473347..3474432 1 NC_009633.1 PFAM: glycosyl transferase, family 2; KEGG: dsy:DSY4437 hypothetical protein; glycosyl transferase family protein 3474432 5313486 Amet_3406 Alkaliphilus metalliredigens QYMF glycosyl transferase family protein YP_001321193.1 3473347 D 293826 CDS YP_001321194.1 150391145 5313487 complement(3474573..3475901) 1 NC_009633.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase 3475901 5313487 Amet_3407 Alkaliphilus metalliredigens QYMF aspartate kinase YP_001321194.1 3474573 R 293826 CDS YP_001321195.1 150391146 5313488 complement(3476263..3477150) 1 NC_009633.1 PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: ctc:CTC02555 citG protein; triphosphoribosyl-dephospho-CoA synthase 3477150 5313488 Amet_3408 Alkaliphilus metalliredigens QYMF triphosphoribosyl-dephospho-CoA synthase YP_001321195.1 3476263 R 293826 CDS YP_001321196.1 150391147 5313489 complement(3477227..3478768) 1 NC_009633.1 TIGRFAM: citrate lyase, alpha subunit; PFAM: Citrate lyase, alpha subunit; KEGG: ctc:CTC02559 citrate lyase alpha chain; citrate lyase subunit alpha 3478768 5313489 Amet_3409 Alkaliphilus metalliredigens QYMF citrate lyase subunit alpha YP_001321196.1 3477227 R 293826 CDS YP_001321197.1 150391148 5313490 complement(3478782..3479654) 1 NC_009633.1 PFAM: HpcH/HpaI aldolase; KEGG: ctc:CTC02560 citrate lyase beta chain; citryl-CoA lyase 3479654 5313490 Amet_3410 Alkaliphilus metalliredigens QYMF citryl-CoA lyase YP_001321197.1 3478782 R 293826 CDS YP_001321198.1 150391149 5313491 complement(3479666..3479929) 1 NC_009633.1 acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma 3479929 5313491 Amet_3411 Alkaliphilus metalliredigens QYMF citrate lyase subunit gamma YP_001321198.1 3479666 R 293826 CDS YP_001321199.1 150391150 5313492 complement(3479939..3480496) 1 NC_009633.1 TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: ctc:CTC02561 fumarate hydratase subunit B; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta 3480496 5313492 Amet_3412 Alkaliphilus metalliredigens QYMF tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta YP_001321199.1 3479939 R 293826 CDS YP_001321200.1 150391151 5313493 complement(3480510..3481352) 1 NC_009633.1 Catalyzes the reversible hydration of fumaric acid to yield I-malic acid; fumarate hydratase 3481352 5313493 Amet_3413 Alkaliphilus metalliredigens QYMF fumarate hydratase YP_001321200.1 3480510 R 293826 CDS YP_001321201.1 150391152 5313494 complement(3481352..3482638) 1 NC_009633.1 PFAM: methylaspartate ammonia-lyase; KEGG: ctc:CTC02563 methylaspartate ammonia-lyase; methylaspartate ammonia-lyase 3482638 5313494 Amet_3414 Alkaliphilus metalliredigens QYMF methylaspartate ammonia-lyase YP_001321201.1 3481352 R 293826 CDS YP_001321202.1 150391153 5313495 complement(3482744..3484198) 1 NC_009633.1 TIGRFAM: methylaspartate mutase, E subunit; PFAM: methylaspartate mutase E subunit; KEGG: ctc:CTC02565 glutamate mutase, MutE; methylaspartate mutase subunit E 3484198 5313495 Amet_3415 Alkaliphilus metalliredigens QYMF methylaspartate mutase subunit E YP_001321202.1 3482744 R 293826 CDS YP_001321203.1 150391154 5313496 complement(3484264..3484719) 1 NC_009633.1 converts methylaspartate to L-glutamate; methylaspartate mutase subunit S 3484719 5313496 Amet_3416 Alkaliphilus metalliredigens QYMF methylaspartate mutase subunit S YP_001321203.1 3484264 R 293826 CDS YP_001321204.1 150391155 5313497 complement(3484733..3485695) 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; KEGG: ctc:CTC02569 transcriptional regulator, putative regular for glutamate degradation; regulatory protein GntR 3485695 5313497 Amet_3417 Alkaliphilus metalliredigens QYMF regulatory protein GntR YP_001321204.1 3484733 R 293826 CDS YP_001321205.1 150391156 5313498 3486656..3488371 1 NC_009633.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein, central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: eba:ebA4751 putative acetolactate synthase large subunit; acetolactate synthase large subunit 3488371 5313498 Amet_3418 Alkaliphilus metalliredigens QYMF acetolactate synthase large subunit YP_001321205.1 3486656 D 293826 CDS YP_001321206.1 150391157 5313499 3488364..3488666 1 NC_009633.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: eca:ECA3849 acetolactate synthase isozyme I small subunit; acetolactate synthase small subunit 3488666 5313499 Amet_3419 Alkaliphilus metalliredigens QYMF acetolactate synthase small subunit YP_001321206.1 3488364 D 293826 CDS YP_001321207.1 150391158 5313500 complement(3488716..3490245) 1 NC_009633.1 PFAM: Domain of unknown function DUF1846; KEGG: ctc:CTC00401 ATP-dependent Zn protease; hypothetical protein 3490245 5313500 Amet_3420 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321207.1 3488716 R 293826 CDS YP_001321208.1 150391159 5313501 complement(3490479..3491723) 1 NC_009633.1 hypothetical protein 3491723 5313501 Amet_3421 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321208.1 3490479 R 293826 CDS YP_001321209.1 150391160 5313502 complement(3491827..3493035) 1 NC_009633.1 KEGG: pca:Pcar_1367 hypothetical protein; hypothetical protein 3493035 5313502 Amet_3422 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321209.1 3491827 R 293826 CDS YP_001321210.1 150391161 5313503 3493142..3494470 1 NC_009633.1 KEGG: bce:BC0877 IG hypothetical 16724; hypothetical protein 3494470 5313503 Amet_3423 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321210.1 3493142 D 293826 CDS YP_001321211.1 150391162 5313504 3494530..3495930 1 NC_009633.1 KEGG: bld:BLi01055 YheD; hypothetical protein 3495930 5313504 Amet_3424 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321211.1 3494530 D 293826 CDS YP_001321212.1 150391163 5313505 complement(3496142..3497464) 1 NC_009633.1 KEGG: bsu:BG13036 similar to hypothetical proteins from B. subtilis; hypothetical protein 3497464 5313505 Amet_3425 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321212.1 3496142 R 293826 CDS YP_001321213.1 150391164 5313506 3497579..3498790 1 NC_009633.1 PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; KEGG: cth:Cthe_0977 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; Mur ligase middle domain-containing protein 3498790 5313506 Amet_3426 Alkaliphilus metalliredigens QYMF Mur ligase middle domain-containing protein YP_001321213.1 3497579 D 293826 CDS YP_001321214.1 150391165 5313507 3498838..3499611 1 NC_009633.1 PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: bha:BH1535 D-alanyl-D-alanine carboxypeptidase (penicilin binding protein); serine-type D-Ala-D-Ala carboxypeptidase 3499611 5313507 Amet_3427 Alkaliphilus metalliredigens QYMF serine-type D-Ala-D-Ala carboxypeptidase YP_001321214.1 3498838 D 293826 CDS YP_001321215.1 150391166 5313508 complement(3499779..3500882) 1 NC_009633.1 KEGG: bsu:BG13036 similar to hypothetical proteins from B. subtilis; hypothetical protein 3500882 5313508 Amet_3428 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321215.1 3499779 R 293826 CDS YP_001321216.1 150391167 5313509 complement(3500891..3502051) 1 NC_009633.1 KEGG: bsu:BG13036 similar to hypothetical proteins from B. subtilis; hypothetical protein 3502051 5313509 Amet_3429 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321216.1 3500891 R 293826 CDS YP_001321217.1 150391168 5313510 complement(3502322..3503077) 1 NC_009633.1 PFAM: SCP-like extracellular protein; KEGG: sth:STH564 hypothetical protein; SCP-like extracellular protein 3503077 5313510 Amet_3430 Alkaliphilus metalliredigens QYMF SCP-like extracellular protein YP_001321217.1 3502322 R 293826 CDS YP_001321218.1 150391169 5313511 3503285..3503563 1 NC_009633.1 KEGG: mta:Moth_1267 hypothetical protein; hypothetical protein 3503563 5313511 Amet_3431 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321218.1 3503285 D 293826 CDS YP_001321219.1 150391170 5313512 3503598..3503894 1 NC_009633.1 hypothetical protein 3503894 5313512 Amet_3432 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321219.1 3503598 D 293826 CDS YP_001321220.1 150391171 5313513 3503960..3504301 1 NC_009633.1 hypothetical protein 3504301 5313513 Amet_3433 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321220.1 3503960 D 293826 CDS YP_001321221.1 150391172 5313514 3504466..3505119 1 NC_009633.1 KEGG: mta:Moth_1269 hypothetical protein; hypothetical protein 3505119 5313514 Amet_3434 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321221.1 3504466 D 293826 CDS YP_001321222.1 150391173 5313515 complement(3505184..3505978) 1 NC_009633.1 KEGG: cth:Cthe_0923 hypothetical protein; hypothetical protein 3505978 5313515 Amet_3435 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321222.1 3505184 R 293826 CDS YP_001321223.1 150391174 5313516 complement(3506265..3507227) 1 NC_009633.1 PFAM: glycosyl transferase, family 2; KEGG: bld:BLi00807 hypothetical protein; glycosyl transferase family protein 3507227 5313516 Amet_3436 Alkaliphilus metalliredigens QYMF glycosyl transferase family protein YP_001321223.1 3506265 R 293826 CDS YP_001321224.1 150391175 5313517 complement(3507533..3510124) 1 NC_009633.1 PFAM: Collagen triple helix repeat; KEGG: bld:BLi00801 hypothetical protein; triple helix repeat-containing collagen 3510124 5313517 Amet_3437 Alkaliphilus metalliredigens QYMF triple helix repeat-containing collagen YP_001321224.1 3507533 R 293826 CDS YP_001321225.1 150391176 5313518 3510699..3511850 1 NC_009633.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: tte:TTE0651 predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; DegT/DnrJ/EryC1/StrS aminotransferase 3511850 5313518 Amet_3438 Alkaliphilus metalliredigens QYMF DegT/DnrJ/EryC1/StrS aminotransferase YP_001321225.1 3510699 D 293826 CDS YP_001321226.1 150391177 5313519 3511890..3513197 1 NC_009633.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase-like; KEGG: tth:TTC0288 UDP-N-acetyl-D-mannosamine 6-dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase 3513197 5313519 Amet_3439 Alkaliphilus metalliredigens QYMF UDP-glucose/GDP-mannose dehydrogenase YP_001321226.1 3511890 D 293826 CDS YP_001321227.1 150391178 5313520 complement(3513249..3513668) 1 NC_009633.1 hypothetical protein 3513668 5313520 Amet_3440 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321227.1 3513249 R 293826 CDS YP_001321228.1 150391179 5313521 complement(3513748..3514731) 1 NC_009633.1 KEGG: bld:BLi00805 hypothetical protein; hypothetical protein 3514731 5313521 Amet_3441 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321228.1 3513748 R 293826 CDS YP_001321229.1 150391180 5313522 complement(3514728..3515675) 1 NC_009633.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain; KEGG: pfu:PF1788 UDP-glucose 4-epimerase; NAD-dependent epimerase/dehydratase 3515675 5313522 Amet_3442 Alkaliphilus metalliredigens QYMF NAD-dependent epimerase/dehydratase YP_001321229.1 3514728 R 293826 CDS YP_001321230.1 150391181 5313523 complement(3515697..3516698) 1 NC_009633.1 KEGG: bsu:BG13318 spore protein; spore protein 3516698 5313523 Amet_3443 Alkaliphilus metalliredigens QYMF spore protein YP_001321230.1 3515697 R 293826 CDS YP_001321231.1 150391182 5313524 complement(3516784..3517794) 1 NC_009633.1 PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; homoserine dehydrogenase, NAD-binding; KEGG: swo:Swol_0706 putative oxidoreductase; oxidoreductase domain-containing protein 3517794 5313524 Amet_3444 Alkaliphilus metalliredigens QYMF oxidoreductase domain-containing protein YP_001321231.1 3516784 R 293826 CDS YP_001321232.1 150391183 5313525 complement(3517797..3518378) 1 NC_009633.1 KEGG: swo:Swol_0704 hexapeptide transferase family protein; hexapeptide transferase family protein 3518378 5313525 Amet_3445 Alkaliphilus metalliredigens QYMF hexapeptide transferase family protein YP_001321232.1 3517797 R 293826 CDS YP_001321233.1 150391184 5313526 complement(3518574..3519944) 1 NC_009633.1 KEGG: bld:BLi01055 YheD; hypothetical protein 3519944 5313526 Amet_3446 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321233.1 3518574 R 293826 CDS YP_001321234.1 150391185 5313527 3520439..3520654 1 NC_009633.1 hypothetical protein 3520654 5313527 Amet_3447 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321234.1 3520439 D 293826 CDS YP_001321235.1 150391186 5313528 3520736..3521767 1 NC_009633.1 KEGG: swo:Swol_1168 YheD; hypothetical protein 3521767 5313528 Amet_3448 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321235.1 3520736 D 293826 CDS YP_001321236.1 150391187 5313529 3521807..3522712 1 NC_009633.1 hypothetical protein 3522712 5313529 Amet_3449 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321236.1 3521807 D 293826 CDS YP_001321237.1 150391188 5313530 3522933..3523628 1 NC_009633.1 PFAM: glycosyl transferase, family 2; KEGG: mta:Moth_1660 glycosyl transferase, family 2; glycosyl transferase family protein 3523628 5313530 Amet_3450 Alkaliphilus metalliredigens QYMF glycosyl transferase family protein YP_001321237.1 3522933 D 293826 CDS YP_001321238.1 150391189 5313531 3523732..3524193 1 NC_009633.1 KEGG: mta:Moth_1659 hypothetical protein; hypothetical protein 3524193 5313531 Amet_3451 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321238.1 3523732 D 293826 CDS YP_001321239.1 150391190 5313532 3524309..3525424 1 NC_009633.1 PFAM: glycosyl transferase, group 1; KEGG: mta:Moth_1658 glycosyl transferase, group 1; group 1 glycosyl transferase 3525424 5313532 Amet_3452 Alkaliphilus metalliredigens QYMF group 1 glycosyl transferase YP_001321239.1 3524309 D 293826 CDS YP_001321240.1 150391191 5313533 3525461..3525994 1 NC_009633.1 KEGG: mta:Moth_1657 hypothetical protein; hypothetical protein 3525994 5313533 Amet_3453 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321240.1 3525461 D 293826 CDS YP_001321241.1 150391192 5313534 complement(3526050..3526907) 1 NC_009633.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cac:CAC3284 uncharacterized conserved protein, DegV family; DegV family protein 3526907 5313534 Amet_3454 Alkaliphilus metalliredigens QYMF DegV family protein YP_001321241.1 3526050 R 293826 CDS YP_001321242.1 150391193 5313535 complement(3527191..3528276) 1 NC_009633.1 TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: cth:Cthe_2209 3-isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 3528276 5313535 Amet_3455 Alkaliphilus metalliredigens QYMF 3-isopropylmalate dehydrogenase YP_001321242.1 3527191 R 293826 CDS YP_001321243.1 150391194 5313536 complement(3528278..3528793) 1 NC_009633.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: cth:Cthe_2210 3-isopropylmalate dehydratase, small subunit; 3-isopropylmalate dehydratase small subunit 3528793 5313536 Amet_3456 Alkaliphilus metalliredigens QYMF 3-isopropylmalate dehydratase small subunit YP_001321243.1 3528278 R 293826 CDS YP_001321244.1 150391195 5313537 complement(3528809..3530071) 1 NC_009633.1 TIGRFAM: homoaconitate hydratase family protein; 3-isopropylmalate dehydratase, large subunit; 3-isopropylmalate dehydratase; PFAM: aconitate hydratase domain protein; KEGG: cth:Cthe_2211 3-isopropylmalate dehydratase, large subunit; 3-isopropylmalate dehydratase large subunit 3530071 5313537 Amet_3457 Alkaliphilus metalliredigens QYMF 3-isopropylmalate dehydratase large subunit YP_001321244.1 3528809 R 293826 CDS YP_001321245.1 150391196 5313538 complement(3530102..3531643) 1 NC_009633.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: gme:Gmet_1265 2-isopropylmalate synthase; 2-isopropylmalate synthase 3531643 5313538 Amet_3458 Alkaliphilus metalliredigens QYMF 2-isopropylmalate synthase YP_001321245.1 3530102 R 293826 CDS YP_001321246.1 150391197 5313539 3532188..3533168 1 NC_009633.1 KEGG: mma:MM0519 hypothetical protein; hypothetical protein 3533168 5313539 Amet_3459 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321246.1 3532188 D 293826 CDS YP_001321247.1 150391198 5313540 complement(3533262..3535070) 1 NC_009633.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC01488 fumarate reductase flavoprotein subunit; flavocytochrome c 3535070 5313540 Amet_3460 Alkaliphilus metalliredigens QYMF flavocytochrome c YP_001321247.1 3533262 R 293826 CDS YP_001321248.1 150391199 5313541 complement(3535536..3536936) 1 NC_009633.1 PFAM: Citrate transporter; Na+/H+ antiporter NhaC; KEGG: bce:BC0373 Na+/H+ antiporter NnaC; Na+/H+ antiporter NhaC 3536936 5313541 Amet_3461 Alkaliphilus metalliredigens QYMF Na+/H+ antiporter NhaC YP_001321248.1 3535536 R 293826 CDS YP_001321249.1 150391200 5313542 3537512..3538006 1 NC_009633.1 PFAM: protein of unknown function DUF520; KEGG: dsy:DSY1969 hypothetical protein; hypothetical protein 3538006 5313542 Amet_3462 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321249.1 3537512 D 293826 CDS YP_001321250.1 150391201 5313543 complement(3538119..3538349) 1 NC_009633.1 hypothetical protein 3538349 5313543 Amet_3463 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321250.1 3538119 R 293826 CDS YP_001321251.1 150391202 5313544 complement(3538380..3538907) 1 NC_009633.1 PFAM: protein of unknown function DUF1456; KEGG: bce:BC0368 hypothetical cytosolic protein; hypothetical protein 3538907 5313544 Amet_3464 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321251.1 3538380 R 293826 CDS YP_001321252.1 150391203 5313545 complement(3539076..3539378) 1 NC_009633.1 hypothetical protein 3539378 5313545 Amet_3465 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321252.1 3539076 R 293826 CDS YP_001321253.1 150391204 5313546 3539755..3540189 1 NC_009633.1 PFAM: Ferritin, Dps family protein; KEGG: fnu:FN1079 neutrophil-activating protein A; Ferritin, Dps family protein 3540189 5313546 Amet_3466 Alkaliphilus metalliredigens QYMF Ferritin, Dps family protein YP_001321253.1 3539755 D 293826 CDS YP_001321254.1 150391205 5313547 complement(3540346..3542151) 1 NC_009633.1 TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: hwa:HQ1765A probable glycine betaine transport protein; choline/carnitine/betaine transporter 3542151 5313547 Amet_3467 Alkaliphilus metalliredigens QYMF choline/carnitine/betaine transporter YP_001321254.1 3540346 R 293826 CDS YP_001321255.1 150391206 5313548 complement(3542623..3543987) 1 NC_009633.1 TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; KEGG: tte:TTE1005 Glucose-6-phosphate 1-dehydrogenase; glucose-6-phosphate 1-dehydrogenase 3543987 5313548 Amet_3468 Alkaliphilus metalliredigens QYMF glucose-6-phosphate 1-dehydrogenase YP_001321255.1 3542623 R 293826 CDS YP_001321256.1 150391207 5313549 complement(3543996..3544892) 1 NC_009633.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 3544892 5313549 Amet_3469 Alkaliphilus metalliredigens QYMF 6-phosphogluconate dehydrogenase YP_001321256.1 3543996 R 293826 CDS YP_001321257.1 150391208 5313550 complement(3544947..3545714) 1 NC_009633.1 TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: osa:4346232 Os08g0547100; 6-phosphogluconolactonase 3545714 5313550 Amet_3470 Alkaliphilus metalliredigens QYMF 6-phosphogluconolactonase YP_001321257.1 3544947 R 293826 CDS YP_001321258.1 150391209 5313551 complement(3546118..3547833) 1 NC_009633.1 PFAM: S-layer domain protein; S-layer protein 3547833 5313551 Amet_3471 Alkaliphilus metalliredigens QYMF S-layer protein YP_001321258.1 3546118 R 293826 CDS YP_001321259.1 150391210 5313552 complement(3547923..3549146) 1 NC_009633.1 KEGG: gka:GK3175 hypothetical protein; hypothetical protein 3549146 5313552 Amet_3472 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321259.1 3547923 R 293826 CDS YP_001321260.1 150391211 5313553 complement(3549133..3549696) 1 NC_009633.1 PFAM: Fimbrial assembly family protein; KEGG: cno:NT01CX_1597 fimbrial assembly protein (PilN) superfamily; fimbrial assembly family protein 3549696 5313553 Amet_3473 Alkaliphilus metalliredigens QYMF fimbrial assembly family protein YP_001321260.1 3549133 R 293826 CDS YP_001321261.1 150391212 5313554 complement(3549719..3550891) 1 NC_009633.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: cno:NT01CX_1603 probable fimbrial assembly protein, putative; type IV pilus assembly protein PilM 3550891 5313554 Amet_3474 Alkaliphilus metalliredigens QYMF type IV pilus assembly protein PilM YP_001321261.1 3549719 R 293826 CDS YP_001321262.1 150391213 5313555 complement(3550994..3551767) 1 NC_009633.1 PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: tte:TTE1266 leader peptidase (prepilin peptidase) / N-methyltransferase; peptidase A24A domain-containing protein 3551767 5313555 Amet_3475 Alkaliphilus metalliredigens QYMF peptidase A24A domain-containing protein YP_001321262.1 3550994 R 293826 CDS YP_001321263.1 150391214 5313556 complement(3551787..3553361) 1 NC_009633.1 hypothetical protein 3553361 5313556 Amet_3476 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321263.1 3551787 R 293826 CDS YP_001321264.1 150391215 5313557 complement(3553409..3554029) 1 NC_009633.1 hypothetical protein 3554029 5313557 Amet_3477 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321264.1 3553409 R 293826 CDS YP_001321265.1 150391216 5313558 complement(3554087..3555811) 1 NC_009633.1 hypothetical protein 3555811 5313558 Amet_3478 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321265.1 3554087 R 293826 CDS YP_001321266.1 150391217 5313559 complement(3556172..3556510) 1 NC_009633.1 KEGG: cpf:CPF_2566 putative type IV pilin; putative type IV pilin 3556510 5313559 Amet_3479 Alkaliphilus metalliredigens QYMF putative type IV pilin YP_001321266.1 3556172 R 293826 CDS YP_001321267.1 150391218 5313560 complement(3556547..3557764) 1 NC_009633.1 PFAM: type II secretion system protein; KEGG: tte:TTE1264 General secretory pathway protein F; type II secretion system protein 3557764 5313560 Amet_3480 Alkaliphilus metalliredigens QYMF type II secretion system protein YP_001321267.1 3556547 R 293826 CDS YP_001321268.1 150391219 5313561 complement(3557807..3558862) 1 NC_009633.1 TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: tte:TTE1263 predicted ATPases involved in pili biogenesis, PilT homologs; twitching motility protein 3558862 5313561 Amet_3481 Alkaliphilus metalliredigens QYMF twitching motility protein YP_001321268.1 3557807 R 293826 CDS YP_001321269.1 150391220 5313562 complement(3558895..3560580) 1 NC_009633.1 PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: tte:TTE1262 predicted ATPases involved in pili biogenesis, PilB homologs; type II secretion system protein E 3560580 5313562 Amet_3482 Alkaliphilus metalliredigens QYMF type II secretion system protein E YP_001321269.1 3558895 R 293826 CDS YP_001321270.1 150391221 5313563 complement(3561184..3563511) 1 NC_009633.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; metal-dependent phosphohydrolase, HD sub domain; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; metal-dependent phosphohydrolase, HD region; KEGG: swo:Swol_2483 putative PAS/PAC sensor protein; diguanylate cyclase and metal dependent phosphohydrolase 3563511 5313563 Amet_3483 Alkaliphilus metalliredigens QYMF diguanylate cyclase and metal dependent phosphohydrolase YP_001321270.1 3561184 R 293826 CDS YP_001321271.1 150391222 5313564 complement(3563633..3564949) 1 NC_009633.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gme:Gmet_1690 radical SAM; radical SAM domain-containing protein 3564949 5313564 Amet_3484 Alkaliphilus metalliredigens QYMF radical SAM domain-containing protein YP_001321271.1 3563633 R 293826 CDS YP_001321272.1 150391223 5313565 complement(3564951..3566300) 1 NC_009633.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY4423 hypothetical protein; radical SAM domain-containing protein 3566300 5313565 Amet_3485 Alkaliphilus metalliredigens QYMF radical SAM domain-containing protein YP_001321272.1 3564951 R 293826 CDS YP_001321273.1 150391224 5313566 complement(3566281..3566961) 1 NC_009633.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cac:CAC3419 S-adenosylmethionine-dependent methyltransferase; type 12 methyltransferase 3566961 5313566 Amet_3486 Alkaliphilus metalliredigens QYMF type 12 methyltransferase YP_001321273.1 3566281 R 293826 CDS YP_001321274.1 150391225 5313567 complement(3566954..3568279) 1 NC_009633.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY4423 hypothetical protein; radical SAM domain-containing protein 3568279 5313567 Amet_3487 Alkaliphilus metalliredigens QYMF radical SAM domain-containing protein YP_001321274.1 3566954 R 293826 CDS YP_001321275.1 150391226 5313568 complement(3568251..3569261) 1 NC_009633.1 KEGG: hch:HCH_01946 hypothetical protein; hypothetical protein 3569261 5313568 Amet_3488 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321275.1 3568251 R 293826 CDS YP_001321276.1 150391227 5313569 complement(3569277..3570353) 1 NC_009633.1 KEGG: chu:CHU_0264 hypothetical protein; hypothetical protein 3570353 5313569 Amet_3489 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321276.1 3569277 R 293826 CDS YP_001321277.1 150391228 5313570 3570894..3572066 1 NC_009633.1 PFAM: aminotransferase, class I and II; KEGG: mta:Moth_1955 aminotransferase, class I and II; class I and II aminotransferase 3572066 5313570 Amet_3490 Alkaliphilus metalliredigens QYMF class I and II aminotransferase YP_001321277.1 3570894 D 293826 CDS YP_001321278.1 150391229 5313571 3572136..3573329 1 NC_009633.1 KEGG: btk:BT9727_4274 conserved hypothetical protein, possible methyltransferase; hypothetical protein 3573329 5313571 Amet_3491 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321278.1 3572136 D 293826 CDS YP_001321279.1 150391230 5313572 complement(3573424..3575271) 1 NC_009633.1 TIGRFAM: small GTP-binding protein; sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: cth:Cthe_2537 sulfate adenylyltransferase, large subunit; sulfate adenylyltransferase, large subunit 3575271 5313572 Amet_3492 Alkaliphilus metalliredigens QYMF sulfate adenylyltransferase, large subunit YP_001321279.1 3573424 R 293826 CDS YP_001321280.1 150391231 5313573 complement(3575356..3576237) 1 NC_009633.1 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 3576237 5313573 Amet_3493 Alkaliphilus metalliredigens QYMF sulfate adenylyltransferase subunit 2 YP_001321280.1 3575356 R 293826 CDS YP_001321281.1 150391232 5313574 complement(3576250..3576564) 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cac:CAC0105 ferredoxin; 4Fe-4S ferredoxin 3576564 5313574 Amet_3494 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001321281.1 3576250 R 293826 CDS YP_001321282.1 150391233 5313575 complement(3576548..3578236) 1 NC_009633.1 catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite; adenylylsulfate reductase subunit alpha 3578236 5313575 Amet_3495 Alkaliphilus metalliredigens QYMF adenylylsulfate reductase subunit alpha YP_001321282.1 3576548 R 293826 CDS YP_001321283.1 150391234 5313576 complement(3578253..3578849) 1 NC_009633.1 PFAM: adenylylsulfate kinase; KEGG: cac:CAC0103 adenylylsulfate kinase; adenylylsulfate kinase 3578849 5313576 Amet_3496 Alkaliphilus metalliredigens QYMF adenylylsulfate kinase YP_001321283.1 3578253 R 293826 CDS YP_001321284.1 150391235 5313577 complement(3578861..3580303) 1 NC_009633.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: gme:Gmet_2857 sodium/sulphate symporter; anion transporter 3580303 5313577 Amet_3497 Alkaliphilus metalliredigens QYMF anion transporter YP_001321284.1 3578861 R 293826 CDS YP_001321285.1 150391236 5313578 complement(3580316..3580942) 1 NC_009633.1 hypothetical protein 3580942 5313578 Amet_3498 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321285.1 3580316 R 293826 CDS YP_001321286.1 150391237 5313579 complement(3580951..3583251) 1 NC_009633.1 PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: wsu:WS1004 hypothetical protein; sulfite reductase (ferredoxin) 3583251 5313579 Amet_3499 Alkaliphilus metalliredigens QYMF sulfite reductase (ferredoxin) YP_001321286.1 3580951 R 293826 CDS YP_001321287.1 150391238 5313580 complement(3583271..3583684) 1 NC_009633.1 PFAM: Mov34/MPN/PAD-1 family protein; KEGG: cth:Cthe_2540 Mov34/MPN/PAD-1; Mov34/MPN/PAD-1 family protein 3583684 5313580 Amet_3500 Alkaliphilus metalliredigens QYMF Mov34/MPN/PAD-1 family protein YP_001321287.1 3583271 R 293826 CDS YP_001321288.1 150391239 5313581 complement(3583712..3584521) 1 NC_009633.1 PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: cth:Cthe_2539 UBA/ThiF-type NAD/FAD binding fold; UBA/THIF-type NAD/FAD binding protein 3584521 5313581 Amet_3501 Alkaliphilus metalliredigens QYMF UBA/THIF-type NAD/FAD binding protein YP_001321288.1 3583712 R 293826 CDS YP_001321289.1 150391240 5313582 complement(3584511..3584726) 1 NC_009633.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: cth:Cthe_2538 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 3584726 5313582 Amet_3502 Alkaliphilus metalliredigens QYMF thiamine biosynthesis protein ThiS YP_001321289.1 3584511 R 293826 CDS YP_001321290.1 150391241 5313583 complement(3585154..3585636) 1 NC_009633.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: btk:BT9727_3116 probable transcriptional regulator; ybaK/ebsC protein 3585636 5313583 Amet_3503 Alkaliphilus metalliredigens QYMF ybaK/ebsC protein YP_001321290.1 3585154 R 293826 CDS YP_001321291.1 150391242 5313585 3586055..3586642 1 NC_009633.1 PFAM: regulatory protein, TetR; KEGG: cac:CAC2605 transcriptional regulator (TetR/AcrR family); TetR family transcriptional regulator 3586642 5313585 Amet_3505 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001321291.1 3586055 D 293826 CDS YP_001321292.1 150391243 5313586 complement(3586779..3587702) 1 NC_009633.1 KEGG: bha:BH1891 hypothetical protein; hypothetical protein 3587702 5313586 Amet_3506 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321292.1 3586779 R 293826 CDS YP_001321293.1 150391244 5313587 complement(3587814..3588506) 1 NC_009633.1 hypothetical protein 3588506 5313587 Amet_3507 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321293.1 3587814 R 293826 CDS YP_001321294.1 150391245 5313588 complement(3588665..3588997) 1 NC_009633.1 hypothetical protein 3588997 5313588 Amet_3508 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321294.1 3588665 R 293826 CDS YP_001321295.1 150391246 5313589 complement(3589441..3589836) 1 NC_009633.1 PFAM: OsmC family protein; KEGG: cph:Cpha266_1001 OsmC family protein; OsmC family protein 3589836 5313589 Amet_3509 Alkaliphilus metalliredigens QYMF OsmC family protein YP_001321295.1 3589441 R 293826 CDS YP_001321296.1 150391247 5313590 complement(3589928..3590980) 1 NC_009633.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dsy:DSY4242 hypothetical protein; threonine aldolase 3590980 5313590 Amet_3510 Alkaliphilus metalliredigens QYMF threonine aldolase YP_001321296.1 3589928 R 293826 CDS YP_001321297.1 150391248 5313591 complement(3591118..3592674) 1 NC_009633.1 PFAM: protein of unknown function DUF112, transmembrane; KEGG: bha:BH2009 hypothetical protein; hypothetical protein 3592674 5313591 Amet_3511 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321297.1 3591118 R 293826 CDS YP_001321298.1 150391249 5313592 complement(3592692..3593177) 1 NC_009633.1 hypothetical protein 3593177 5313592 Amet_3512 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321298.1 3592692 R 293826 CDS YP_001321299.1 150391250 5313593 complement(3593374..3594408) 1 NC_009633.1 PFAM: Uncharacterized protein UPF0065; KEGG: bha:BH2007 hypothetical protein; hypothetical protein 3594408 5313593 Amet_3513 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321299.1 3593374 R 293826 CDS YP_001321300.1 150391251 5313594 complement(3594717..3595784) 1 NC_009633.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: HhH-GPD family protein; Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; KEGG: dsy:DSY2079 hypothetical protein; methylated-DNA--protein-cysteine methyltransferase 3595784 5313594 Amet_3514 Alkaliphilus metalliredigens QYMF methylated-DNA--protein-cysteine methyltransferase YP_001321300.1 3594717 R 293826 CDS YP_001321301.1 150391252 5313595 complement(3595875..3597014) 1 NC_009633.1 PFAM: pyruvate carboxyltransferase; KEGG: tte:TTE0472 homocitrate synthase; pyruvate carboxyltransferase 3597014 5313595 Amet_3515 Alkaliphilus metalliredigens QYMF pyruvate carboxyltransferase YP_001321301.1 3595875 R 293826 CDS YP_001321302.1 150391253 5313596 complement(3597285..3597593) 1 NC_009633.1 KEGG: mgm:Mmc1_0047 ferredoxin, 2Fe-2S; ferredoxin, 2Fe-2S 3597593 5313596 Amet_3516 Alkaliphilus metalliredigens QYMF ferredoxin, 2Fe-2S YP_001321302.1 3597285 R 293826 CDS YP_001321303.1 150391254 5313597 complement(3597619..3598866) 1 NC_009633.1 TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cac:CAC0259 fusion nifN/K+nifB (nifN-nitrogenase iron molybdenum cofactor biosinthesis protein, nifK-nitrogenase molibdenum-iron protein beta chain, nifB-nitrogenase iron-molibdenum cofactor biosynthesis protein); nitrogenase cofactor biosynthesis protein NifB 3598866 5313597 Amet_3517 Alkaliphilus metalliredigens QYMF nitrogenase cofactor biosynthesis protein NifB YP_001321303.1 3597619 R 293826 CDS YP_001321304.1 150391255 5313598 complement(3598984..3600351) 1 NC_009633.1 PFAM: oxidoreductase/nitrogenase, component 1; KEGG: cac:CAC0259 fusion nifN/K+nifB (nifN-nitrogenase iron molybdenum cofactor biosinthesis protein, nifK-nitrogenase molibdenum-iron protein beta chain, nifB-nitrogenase iron-molibdenum cofactor biosynthesis protein); nitrogenase 3600351 5313598 Amet_3518 Alkaliphilus metalliredigens QYMF nitrogenase YP_001321304.1 3598984 R 293826 CDS YP_001321305.1 150391256 5313599 complement(3600341..3601714) 1 NC_009633.1 TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: cac:CAC0258 nitrogenase iron-molibdenum cofactor biosinthesis protein, gene nifE; nitrogenase MoFe cofactor biosynthesis protein NifE 3601714 5313599 Amet_3519 Alkaliphilus metalliredigens QYMF nitrogenase MoFe cofactor biosynthesis protein NifE YP_001321305.1 3600341 R 293826 CDS YP_001321306.1 150391257 5313600 complement(3601784..3603148) 1 NC_009633.1 TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: cac:CAC0257 nitrogenase molibdenum-iron protein, beta chain, gene nifK; nitrogenase molybdenum-iron protein subunit beta 3603148 5313600 Amet_3520 Alkaliphilus metalliredigens QYMF nitrogenase molybdenum-iron protein subunit beta YP_001321306.1 3601784 R 293826 CDS YP_001321307.1 150391258 5313601 complement(3603142..3604746) 1 NC_009633.1 TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: cac:CAC0256 nitrogenase molybdenum-iron protein, alpha chain (nitrogenase component I) gene nifD; nitrogenase molybdenum-iron protein subunit alpha 3604746 5313601 Amet_3521 Alkaliphilus metalliredigens QYMF nitrogenase molybdenum-iron protein subunit alpha YP_001321307.1 3603142 R 293826 CDS YP_001321308.1 150391259 5313602 complement(3604771..3605154) 1 NC_009633.1 PFAM: nitrogen regulatory protein P-II; KEGG: cac:CAC0255 nitrogen regulatory protein PII (nitrogen fixation nifHD); nitrogen regulatory protein P-II 3605154 5313602 Amet_3522 Alkaliphilus metalliredigens QYMF nitrogen regulatory protein P-II YP_001321308.1 3604771 R 293826 CDS YP_001321309.1 150391260 5313603 complement(3605168..3605494) 1 NC_009633.1 PFAM: nitrogen regulatory protein P-II; KEGG: cac:CAC0254 nitrogen regulatory protein PII (nitrogen fixation nifHD); nitrogen regulatory protein P-II 3605494 5313603 Amet_3523 Alkaliphilus metalliredigens QYMF nitrogen regulatory protein P-II YP_001321309.1 3605168 R 293826 CDS YP_001321310.1 150391261 5313604 complement(3605581..3606399) 1 NC_009633.1 TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein; KEGG: cac:CAC0253 nitrogenase iron protein (nitrogenase component II) gene nifH; nitrogenase iron protein 3606399 5313604 Amet_3524 Alkaliphilus metalliredigens QYMF nitrogenase iron protein YP_001321310.1 3605581 R 293826 CDS YP_001321311.1 150391262 5313605 complement(3606511..3606663) 1 NC_009633.1 hypothetical protein 3606663 5313605 Amet_3525 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321311.1 3606511 R 293826 CDS YP_001321312.1 150391263 5313607 complement(3607247..3607765) 1 NC_009633.1 hypothetical protein 3607765 5313607 Amet_3527 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321312.1 3607247 R 293826 CDS YP_001321313.1 150391264 5313608 complement(3607750..3608598) 1 NC_009633.1 hypothetical protein 3608598 5313608 Amet_3528 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321313.1 3607750 R 293826 CDS YP_001321314.1 150391265 5313609 3608768..3609892 1 NC_009633.1 hypothetical protein 3609892 5313609 Amet_3529 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321314.1 3608768 D 293826 CDS YP_001321315.1 150391266 5313610 3609912..3610748 1 NC_009633.1 hypothetical protein 3610748 5313610 Amet_3530 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321315.1 3609912 D 293826 CDS YP_001321316.1 150391267 5313611 complement(3611040..3612287) 1 NC_009633.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: oih:OB0241 C4-dicarboxylate transport system permease large protein; TRAP dicarboxylate transporter subunit DctM 3612287 5313611 Amet_3531 Alkaliphilus metalliredigens QYMF TRAP dicarboxylate transporter subunit DctM YP_001321316.1 3611040 R 293826 CDS YP_001321317.1 150391268 5313612 complement(3612288..3612782) 1 NC_009633.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: dsy:DSY4744 hypothetical protein; tripartite ATP-independent periplasmic transporter DctQ 3612782 5313612 Amet_3532 Alkaliphilus metalliredigens QYMF tripartite ATP-independent periplasmic transporter DctQ YP_001321317.1 3612288 R 293826 CDS YP_001321318.1 150391269 5313613 complement(3612849..3613868) 1 NC_009633.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bha:BH2673 C4-dicarboxylate transport system (C4-dicarboxylate-binding protein); TRAP dicarboxylate transporter subunit DctP 3613868 5313613 Amet_3533 Alkaliphilus metalliredigens QYMF TRAP dicarboxylate transporter subunit DctP YP_001321318.1 3612849 R 293826 CDS YP_001321319.1 150391270 5313614 complement(3613918..3615582) 1 NC_009633.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 3615582 5313614 Amet_3534 Alkaliphilus metalliredigens QYMF dihydroxy-acid dehydratase YP_001321319.1 3613918 R 293826 CDS YP_001321320.1 150391271 5313615 complement(3615728..3616465) 1 NC_009633.1 PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: cno:NT01CX_0496 two-component response regulator; response regulator receiver protein 3616465 5313615 Amet_3535 Alkaliphilus metalliredigens QYMF response regulator receiver protein YP_001321320.1 3615728 R 293826 CDS YP_001321321.1 150391272 5313616 complement(3616462..3618063) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase internal region; Cupin 2, conserved barrel domain protein; KEGG: cpf:CPF_1171 sensor histidine kinase; histidine kinase 3618063 5313616 Amet_3536 Alkaliphilus metalliredigens QYMF histidine kinase YP_001321321.1 3616462 R 293826 CDS YP_001321322.1 150391273 5313617 complement(3618369..3626900) 1 NC_009633.1 PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: cth:Cthe_1221 glycosyltransferase 36; glycosyltransferase 3626900 5313617 Amet_3537 Alkaliphilus metalliredigens QYMF glycosyltransferase YP_001321322.1 3618369 R 293826 CDS YP_001321323.1 150391274 5313618 complement(3626938..3629415) 1 NC_009633.1 PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; KEGG: cth:Cthe_1079 nucleotidyl transferase; nucleotidyl transferase 3629415 5313618 Amet_3538 Alkaliphilus metalliredigens QYMF nucleotidyl transferase YP_001321323.1 3626938 R 293826 CDS YP_001321324.1 150391275 5313619 complement(3629577..3634424) 1 NC_009633.1 PFAM: S-layer domain protein; peptidase M20; peptidase M28; KEGG: bha:BH3865 hypothetical protein; peptidase M28 3634424 5313619 Amet_3539 Alkaliphilus metalliredigens QYMF peptidase M28 YP_001321324.1 3629577 R 293826 CDS YP_001321325.1 150391276 5313620 complement(3634602..3634982) 1 NC_009633.1 hypothetical protein 3634982 5313620 Amet_3540 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321325.1 3634602 R 293826 CDS YP_001321326.1 150391277 5313621 complement(3635328..3637109) 1 NC_009633.1 KEGG: bce:BC0624 von Willebrand factor type A domain protein; nitric oxide reductase activation protein-like protein 3637109 5313621 Amet_3541 Alkaliphilus metalliredigens QYMF nitric oxide reductase activation protein-like protein YP_001321326.1 3635328 R 293826 CDS YP_001321327.1 150391278 5313622 complement(3637122..3638045) 1 NC_009633.1 PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: bld:BLi02262 YojN; ATPase 3638045 5313622 Amet_3542 Alkaliphilus metalliredigens QYMF ATPase YP_001321327.1 3637122 R 293826 CDS YP_001321328.1 150391279 5313623 complement(3638330..3638746) 1 NC_009633.1 KEGG: dsy:DSY0092 hypothetical protein; metal ion ABC transporter periplasmic component/surface adhesin-like protein 3638746 5313623 Amet_3543 Alkaliphilus metalliredigens QYMF metal ion ABC transporter periplasmic component/surface adhesin-like protein YP_001321328.1 3638330 R 293826 CDS YP_001321329.1 150391280 5313624 complement(3638765..3638986) 1 NC_009633.1 hypothetical protein 3638986 5313624 Amet_3544 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321329.1 3638765 R 293826 CDS YP_001321330.1 150391281 5313625 complement(3639147..3639977) 1 NC_009633.1 TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dsy:DSY1025 hypothetical protein; HisJ family histidinol phosphate phosphatase 3639977 5313625 Amet_3545 Alkaliphilus metalliredigens QYMF HisJ family histidinol phosphate phosphatase YP_001321330.1 3639147 R 293826 CDS YP_001321331.1 150391282 5313626 3640375..3641481 1 NC_009633.1 KEGG: mta:Moth_1442 hypothetical protein; hypothetical protein 3641481 5313626 Amet_3546 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321331.1 3640375 D 293826 CDS YP_001321332.1 150391283 5313627 3641474..3641686 1 NC_009633.1 PFAM: SirA family protein; KEGG: gsu:GSU2521 hypothetical protein; SirA family protein 3641686 5313627 Amet_3547 Alkaliphilus metalliredigens QYMF SirA family protein YP_001321332.1 3641474 D 293826 CDS YP_001321333.1 150391284 5313628 3641687..3641971 1 NC_009633.1 KEGG: chy:CHY_0235 hypothetical protein; hypothetical protein 3641971 5313628 Amet_3548 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321333.1 3641687 D 293826 CDS YP_001321334.1 150391285 5313631 complement(3642591..3644513) 1 NC_009633.1 PFAM: protein of unknown function DUF214; KEGG: bld:BLi04210 similar to ABC transporter (permease); RBL02069; hypothetical protein 3644513 5313631 Amet_3551 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321334.1 3642591 R 293826 CDS YP_001321335.1 150391286 5313632 complement(3644510..3645289) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB0833 ABC transporter ATP-binding protein; ABC transporter-like protein 3645289 5313632 Amet_3552 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321335.1 3644510 R 293826 CDS YP_001321336.1 150391287 5313633 complement(3645322..3647229) 1 NC_009633.1 PFAM: protein of unknown function DUF214; KEGG: ctc:pE88_26 ABC transporter-associated permease; hypothetical protein 3647229 5313633 Amet_3553 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321336.1 3645322 R 293826 CDS YP_001321337.1 150391288 5313634 complement(3647219..3647974) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:pE88_25 ABC transporter ATP-binding protein; ABC transporter-like protein 3647974 5313634 Amet_3554 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321337.1 3647219 R 293826 CDS YP_001321338.1 150391289 5313635 complement(3648107..3649075) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; KEGG: ctc:pE88_23 two-component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 3649075 5313635 Amet_3555 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001321338.1 3648107 R 293826 CDS YP_001321339.1 150391290 5313636 complement(3649076..3649765) 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ctc:pE88_22 two-component response regulator; two component transcriptional regulator 3649765 5313636 Amet_3556 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001321339.1 3649076 R 293826 CDS YP_001321340.1 150391291 5313639 complement(3650842..3651051) 1 NC_009633.1 hypothetical protein 3651051 5313639 Amet_3559 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321340.1 3650842 R 293826 CDS YP_001321341.1 150391292 5313640 complement(3651055..3651798) 1 NC_009633.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein; IstB ATP binding domain-containing protein 3651798 5313640 Amet_3560 Alkaliphilus metalliredigens QYMF IstB ATP binding domain-containing protein YP_001321341.1 3651055 R 293826 CDS YP_001321342.1 150391293 5313641 complement(3651786..3653339) 1 NC_009633.1 PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22); integrase catalytic subunit 3653339 5313641 Amet_3561 Alkaliphilus metalliredigens QYMF integrase catalytic subunit YP_001321342.1 3651786 R 293826 CDS YP_001321343.1 150391294 5313642 complement(3653409..3653855) 1 NC_009633.1 hypothetical protein 3653855 5313642 Amet_3562 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321343.1 3653409 R 293826 CDS YP_001321344.1 150391295 5313643 3654005..3654748 1 NC_009633.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: fnu:FN0219 autolysin response regulator; LytTR family two component transcriptional regulator 3654748 5313643 Amet_3563 Alkaliphilus metalliredigens QYMF LytTR family two component transcriptional regulator YP_001321344.1 3654005 D 293826 CDS YP_001321345.1 150391296 5313644 complement(3654801..3655115) 1 NC_009633.1 hypothetical protein 3655115 5313644 Amet_3564 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321345.1 3654801 R 293826 CDS YP_001321346.1 150391297 5313645 complement(3655278..3656060) 1 NC_009633.1 KEGG: cth:Cthe_2966 hypothetical protein; hypothetical protein 3656060 5313645 Amet_3565 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321346.1 3655278 R 293826 CDS YP_001321347.1 150391298 5313646 complement(3656109..3656429) 1 NC_009633.1 hypothetical protein 3656429 5313646 Amet_3566 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321347.1 3656109 R 293826 CDS YP_001321348.1 150391299 5313647 3656573..3657844 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; KEGG: dsy:DSY2529 hypothetical protein; signal transduction histidine kinase regulating citrate/malate metabolism 3657844 5313647 Amet_3567 Alkaliphilus metalliredigens QYMF signal transduction histidine kinase regulating citrate/malate metabolism YP_001321348.1 3656573 D 293826 CDS YP_001321349.1 150391300 5313648 3657933..3659222 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; KEGG: dsy:DSY2529 hypothetical protein; signal transduction histidine kinase regulating citrate/malate metabolism 3659222 5313648 Amet_3568 Alkaliphilus metalliredigens QYMF signal transduction histidine kinase regulating citrate/malate metabolism YP_001321349.1 3657933 D 293826 CDS YP_001321350.1 150391301 5313649 complement(3659395..3659550) 1 NC_009633.1 hypothetical protein 3659550 5313649 Amet_3569 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321350.1 3659395 R 293826 CDS YP_001321351.1 150391302 5313651 complement(3660261..3660734) 1 NC_009633.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 3660734 smpB 5313651 smpB Alkaliphilus metalliredigens QYMF SsrA-binding protein YP_001321351.1 3660261 R 293826 CDS YP_001321352.1 150391303 5313652 complement(3660841..3661527) 1 NC_009633.1 PFAM: TrkA-C domain protein; KEGG: cpr:CPR_0508 TrkA domain protein; TrkA domain-containing protein 3661527 5313652 Amet_3571 Alkaliphilus metalliredigens QYMF TrkA domain-containing protein YP_001321352.1 3660841 R 293826 CDS YP_001321353.1 150391304 5313653 complement(3661670..3663790) 1 NC_009633.1 KEGG: cac:CAC0715 fusion ribonuclease and ribosomal protein S1 domain; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein; ribonuclease R 3663790 5313653 Amet_3572 Alkaliphilus metalliredigens QYMF ribonuclease R YP_001321353.1 3661670 R 293826 CDS YP_001321354.1 150391305 5313654 complement(3664091..3664402) 1 NC_009633.1 PFAM: protein of unknown function DUF1294; KEGG: btk:BT9727_3318 hypothetical protein; hypothetical protein 3664402 5313654 Amet_3573 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321354.1 3664091 R 293826 CDS YP_001321355.1 150391306 5313655 complement(3664513..3666528) 1 NC_009633.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 3666528 hppA 5313655 hppA Alkaliphilus metalliredigens QYMF membrane-bound proton-translocating pyrophosphatase YP_001321355.1 3664513 R 293826 CDS YP_001321356.1 150391307 5313656 complement(3666598..3666831) 1 NC_009633.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: swo:Swol_0277 preprotein translocase, SecG subunit; preprotein translocase subunit SecG 3666831 5313656 Amet_3575 Alkaliphilus metalliredigens QYMF preprotein translocase subunit SecG YP_001321356.1 3666598 R 293826 CDS YP_001321357.1 150391308 5313657 complement(3667103..3668395) 1 NC_009633.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 3668395 eno 5313657 eno Alkaliphilus metalliredigens QYMF phosphopyruvate hydratase YP_001321357.1 3667103 R 293826 CDS YP_001321358.1 150391309 5313658 complement(3668422..3669957) 1 NC_009633.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 3669957 5313658 Amet_3577 Alkaliphilus metalliredigens QYMF phosphoglyceromutase YP_001321358.1 3668422 R 293826 CDS YP_001321359.1 150391310 5313659 complement(3669972..3670718) 1 NC_009633.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 3670718 tpiA 5313659 tpiA Alkaliphilus metalliredigens QYMF triosephosphate isomerase YP_001321359.1 3669972 R 293826 CDS YP_001321360.1 150391311 5313660 complement(3670731..3671930) 1 NC_009633.1 PFAM: phosphoglycerate kinase; KEGG: cth:Cthe_0138 phosphoglycerate kinase; phosphoglycerate kinase 3671930 5313660 Amet_3579 Alkaliphilus metalliredigens QYMF phosphoglycerate kinase YP_001321360.1 3670731 R 293826 CDS YP_001321361.1 150391312 5313661 complement(3672071..3673081) 1 NC_009633.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: chy:CHY_0280 glyceraldehyde-3-phosphate dehydrogenase, type I; glyceraldehyde-3-phosphate dehydrogenase, type I 3673081 5313661 Amet_3580 Alkaliphilus metalliredigens QYMF glyceraldehyde-3-phosphate dehydrogenase, type I YP_001321361.1 3672071 R 293826 CDS YP_001321362.1 150391313 5313662 complement(3673117..3674145) 1 NC_009633.1 PFAM: putative sugar-binding domain protein; KEGG: tte:TTE1763 Transcriptional regulator, contains sigma factor-related N-terminal domain; DeoR family transcriptional regulator 3674145 5313662 Amet_3581 Alkaliphilus metalliredigens QYMF DeoR family transcriptional regulator YP_001321362.1 3673117 R 293826 CDS YP_001321363.1 150391314 5313663 complement(3674390..3675778) 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: dsy:DSY4842 hypothetical protein; RNA polymerase sigma-54 subunit RpoN 3675778 5313663 Amet_3582 Alkaliphilus metalliredigens QYMF RNA polymerase sigma-54 subunit RpoN YP_001321363.1 3674390 R 293826 CDS YP_001321364.1 150391315 5313664 complement(3676024..3676968) 1 NC_009633.1 PFAM: inner-membrane translocator; KEGG: tpa:TP0323 putative simple sugar transport system permease protein; inner-membrane translocator 3676968 5313664 Amet_3583 Alkaliphilus metalliredigens QYMF inner-membrane translocator YP_001321364.1 3676024 R 293826 CDS YP_001321365.1 150391316 5313665 complement(3676968..3678077) 1 NC_009633.1 PFAM: inner-membrane translocator; KEGG: tpa:TP0322 putative simple sugar transport system permease protein; inner-membrane translocator 3678077 5313665 Amet_3584 Alkaliphilus metalliredigens QYMF inner-membrane translocator YP_001321365.1 3676968 R 293826 CDS YP_001321366.1 150391317 5313666 complement(3678070..3679605) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_1831 ABC transporter, ATP-binding protein; ABC transporter-like protein 3679605 5313666 Amet_3585 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321366.1 3678070 R 293826 CDS YP_001321367.1 150391318 5313667 complement(3679623..3680351) 1 NC_009633.1 PFAM: Radical SAM domain protein; KEGG: hin:HI0520 hypothetical protein; radical SAM domain-containing protein 3680351 5313667 Amet_3586 Alkaliphilus metalliredigens QYMF radical SAM domain-containing protein YP_001321367.1 3679623 R 293826 CDS YP_001321368.1 150391319 5313668 complement(3680356..3681873) 1 NC_009633.1 KEGG: hin:HI0521 hypothetical protein; hypothetical protein 3681873 5313668 Amet_3587 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321368.1 3680356 R 293826 CDS YP_001321369.1 150391320 5313669 complement(3681969..3683057) 1 NC_009633.1 PFAM: basic membrane lipoprotein; KEGG: tpa:TP0319 putative simple sugar transport system substrate-binding protein; basic membrane lipoprotein 3683057 5313669 Amet_3588 Alkaliphilus metalliredigens QYMF basic membrane lipoprotein YP_001321369.1 3681969 R 293826 CDS YP_001321370.1 150391321 5313670 complement(3683318..3684511) 1 NC_009633.1 PFAM: fatty acid synthesis plsX protein; KEGG: tte:TTE1874 fatty acid/phospholipid biosynthesis enzyme; glycine reductase 3684511 5313670 Amet_3589 Alkaliphilus metalliredigens QYMF glycine reductase YP_001321370.1 3683318 R 293826 CDS YP_001321371.1 150391322 5313671 complement(3684524..3686065) 1 NC_009633.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: tte:TTE1875 3-oxoacyl-(acyl-carrier-protein) synthase III; betaine reductase 3686065 5313671 Amet_3590 Alkaliphilus metalliredigens QYMF betaine reductase YP_001321371.1 3684524 R 293826 CDS YP_001321372.1 150391323 5313672 complement(3686224..3687534) 1 NC_009633.1 KEGG: chy:CHY_2393 glycine reductase, selenoprotein B; Contains selenocysteine; TIGRFAM: glycine reductase, selenoprotein B; selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; PFAM: Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase; selenoprotein B 3687534 5313672 Amet_3591 Alkaliphilus metalliredigens QYMF selenoprotein B YP_001321372.1 3686224 R 293826 CDS YP_001321373.1 150391324 5313673 complement(3687588..3688064) 1 NC_009633.1 GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin; glycine/sarcosine/betaine reductase complex protein A 3688064 5313673 Amet_3592 Alkaliphilus metalliredigens QYMF glycine/sarcosine/betaine reductase complex protein A YP_001321373.1 3687588 R 293826 CDS YP_001321374.1 150391325 5313674 complement(3688157..3689443) 1 NC_009633.1 PFAM: Glycine/sarcosine/betaine reductase complex, protein B, alpha and beta subunits; KEGG: tte:TTE1879 GrdE proprotein; sarcosine reductase 3689443 5313674 Amet_3593 Alkaliphilus metalliredigens QYMF sarcosine reductase YP_001321374.1 3688157 R 293826 CDS YP_001321375.1 150391326 5313675 complement(3689510..3689827) 1 NC_009633.1 PFAM: Thioredoxin domain; KEGG: tte:TTE1880 Thiol-disulfide isomerase and thioredoxins; thioredoxin domain-containing protein 3689827 5313675 Amet_3594 Alkaliphilus metalliredigens QYMF thioredoxin domain-containing protein YP_001321375.1 3689510 R 293826 CDS YP_001321376.1 150391327 5313676 complement(3689935..3690882) 1 NC_009633.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; FAD dependent oxidoreductase; KEGG: tte:TTE1881 thioredoxin reductase; thioredoxin reductase 3690882 5313676 Amet_3595 Alkaliphilus metalliredigens QYMF thioredoxin reductase YP_001321376.1 3689935 R 293826 CDS YP_001321377.1 150391328 5313677 complement(3690959..3691342) 1 NC_009633.1 KEGG: tte:TTE1882 GrdX protein; GrdX protein 3691342 5313677 Amet_3596 Alkaliphilus metalliredigens QYMF GrdX protein YP_001321377.1 3690959 R 293826 CDS YP_001321378.1 150391329 5313678 complement(3691982..3692833) 1 NC_009633.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cno:NT01CX_0894 DegV family protein; DegV family protein 3692833 5313678 Amet_3597 Alkaliphilus metalliredigens QYMF DegV family protein YP_001321378.1 3691982 R 293826 CDS YP_001321379.1 150391330 5313679 complement(3693002..3693499) 1 NC_009633.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tte:TTE0253 predicted rRNA methylase (SpoU class); tRNA/rRNA methyltransferase SpoU 3693499 5313679 Amet_3598 Alkaliphilus metalliredigens QYMF tRNA/rRNA methyltransferase SpoU YP_001321379.1 3693002 R 293826 CDS YP_001321380.1 150391331 5313680 complement(3693643..3694725) 1 NC_009633.1 hypothetical protein 3694725 5313680 Amet_3599 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321380.1 3693643 R 293826 CDS YP_001321381.1 150391332 5313681 3694979..3695455 1 NC_009633.1 KEGG: cac:CAC0787 uncharacterized conserved protein, repeats; hypothetical protein 3695455 5313681 Amet_3600 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321381.1 3694979 D 293826 CDS YP_001321382.1 150391333 5313682 3695548..3695847 1 NC_009633.1 KEGG: cac:CAC0786 uncharacterized conserved protein, repeats; hypothetical protein 3695847 5313682 Amet_3601 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321382.1 3695548 D 293826 CDS YP_001321383.1 150391334 5313683 complement(3695925..3696980) 1 NC_009633.1 PFAM: Semialdehyde dehydrogenase, NAD - binding; oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: bat:BAS3390 oxidoreductase, Gfo/Idh/MocA family; oxidoreductase domain-containing protein 3696980 5313683 Amet_3602 Alkaliphilus metalliredigens QYMF oxidoreductase domain-containing protein YP_001321383.1 3695925 R 293826 CDS YP_001321384.1 150391335 5313684 complement(3697111..3698358) 1 NC_009633.1 PFAM: uncharacterised conserved protein UCP033563; KEGG: cac:CAC0016 related to HTH domain of SpoOJ/ParA/ParB/repB family, involved in chromosome partitioning; hypothetical protein 3698358 5313684 Amet_3603 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321384.1 3697111 R 293826 CDS YP_001321385.1 150391336 5313685 complement(3698427..3699341) 1 NC_009633.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: cac:CAC0015 D-3-phosphoglycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 3699341 5313685 Amet_3604 Alkaliphilus metalliredigens QYMF D-isomer specific 2-hydroxyacid dehydrogenase YP_001321385.1 3698427 R 293826 CDS YP_001321386.1 150391337 5313686 complement(3699355..3700425) 1 NC_009633.1 PFAM: aminotransferase, class V; KEGG: cac:CAC0014 aminotransferase; alanine--glyoxylate transaminase 3700425 5313686 Amet_3605 Alkaliphilus metalliredigens QYMF alanine--glyoxylate transaminase YP_001321386.1 3699355 R 293826 CDS YP_001321387.1 150391338 5313687 3700928..3702157 1 NC_009633.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 3702157 5313687 Amet_3606 Alkaliphilus metalliredigens QYMF tyrosyl-tRNA synthetase YP_001321387.1 3700928 D 293826 CDS YP_001321388.1 150391339 5313688 3702324..3703172 1 NC_009633.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: sth:STH524 hypothetical protein; DegV family protein 3703172 5313688 Amet_3607 Alkaliphilus metalliredigens QYMF DegV family protein YP_001321388.1 3702324 D 293826 CDS YP_001321389.1 150391340 5313689 complement(3703175..3704119) 1 NC_009633.1 PFAM: protein of unknown function DUF362; KEGG: mma:MM1795 iron-sulfur cluster-binding protein; hypothetical protein 3704119 5313689 Amet_3608 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321389.1 3703175 R 293826 CDS YP_001321390.1 150391341 5313690 complement(3704344..3706533) 1 NC_009633.1 PFAM: S-layer domain protein; metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: efa:EF0062 5'-nucleotidase family protein; 5'-nucleotidase domain-containing protein 3706533 5313690 Amet_3609 Alkaliphilus metalliredigens QYMF 5'-nucleotidase domain-containing protein YP_001321390.1 3704344 R 293826 CDS YP_001321391.1 150391342 5313691 complement(3706762..3708552) 1 NC_009633.1 PFAM: Peptidoglycan-binding LysM; metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: bcl:ABC0966 nucleotidase; 5'-nucleotidase domain-containing protein 3708552 5313691 Amet_3610 Alkaliphilus metalliredigens QYMF 5'-nucleotidase domain-containing protein YP_001321391.1 3706762 R 293826 CDS YP_001321392.1 150391343 5313692 complement(3708760..3709923) 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF362; KEGG: dsy:DSY4491 hypothetical protein; hypothetical protein 3709923 5313692 Amet_3611 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321392.1 3708760 R 293826 CDS YP_001321393.1 150391344 5313693 complement(3709945..3710769) 1 NC_009633.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: ctc:CTC00366 predicted hydrolase; cof family hydrolase 3710769 5313693 Amet_3612 Alkaliphilus metalliredigens QYMF cof family hydrolase YP_001321393.1 3709945 R 293826 CDS YP_001321394.1 150391345 5313694 3710898..3711305 1 NC_009633.1 PFAM: ferric-uptake regulator; KEGG: tte:TTE1767 Fe2+/Zn2+ uptake regulation proteins; ferric uptake regulator family protein 3711305 5313694 Amet_3613 Alkaliphilus metalliredigens QYMF ferric uptake regulator family protein YP_001321394.1 3710898 D 293826 CDS YP_001321395.1 150391346 5313695 complement(3711553..3712632) 1 NC_009633.1 cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase; threonine-phosphate decarboxylase 3712632 5313695 Amet_3614 Alkaliphilus metalliredigens QYMF threonine-phosphate decarboxylase YP_001321395.1 3711553 R 293826 CDS YP_001321396.1 150391347 5313696 complement(3712637..3713581) 1 NC_009633.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: cno:NT01CX_2082 cobalamin biosynthesis protein CobD; cobalamin biosynthesis protein CobD 3713581 5313696 Amet_3615 Alkaliphilus metalliredigens QYMF cobalamin biosynthesis protein CobD YP_001321396.1 3712637 R 293826 CDS YP_001321397.1 150391348 5313697 complement(3713581..3715092) 1 NC_009633.1 TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: ctc:CTC00720 cobyric acid synthase cbiP; cobyric acid synthase CobQ 3715092 5313697 Amet_3616 Alkaliphilus metalliredigens QYMF cobyric acid synthase CobQ YP_001321397.1 3713581 R 293826 CDS YP_001321398.1 150391349 5313698 complement(3715111..3716367) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mla:Mlab_1378 hypothetical protein; ABC transporter-like protein 3716367 5313698 Amet_3617 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321398.1 3715111 R 293826 CDS YP_001321399.1 150391350 5313699 complement(3716384..3717424) 1 NC_009633.1 PFAM: transport system permease protein; KEGG: ctc:CTC00784 iron(III) dicitrate transport system permease protein fecD; transport system permease 3717424 5313699 Amet_3618 Alkaliphilus metalliredigens QYMF transport system permease YP_001321399.1 3716384 R 293826 CDS YP_001321400.1 150391351 5313700 complement(3717535..3718518) 1 NC_009633.1 PFAM: periplasmic binding protein; KEGG: sth:STH1929 iron ABC transporter substrate-binding protein; periplasmic binding protein 3718518 5313700 Amet_3619 Alkaliphilus metalliredigens QYMF periplasmic binding protein YP_001321400.1 3717535 R 293826 CDS YP_001321401.1 150391352 5313701 complement(3718535..3719140) 1 NC_009633.1 PFAM: Phosphoglycerate mutase; KEGG: cth:Cthe_3153 phosphoglycerate mutase; phosphoglycerate mutase 3719140 5313701 Amet_3620 Alkaliphilus metalliredigens QYMF phosphoglycerate mutase YP_001321401.1 3718535 R 293826 CDS YP_001321402.1 150391353 5313702 complement(3719196..3719948) 1 NC_009633.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cno:NT01CX_2079 cobalamin 5'-phosphate synthase; cobalamin 5'-phosphate synthase 3719948 5313702 Amet_3621 Alkaliphilus metalliredigens QYMF cobalamin 5'-phosphate synthase YP_001321402.1 3719196 R 293826 CDS YP_001321403.1 150391354 5313703 complement(3719938..3720480) 1 NC_009633.1 PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: cth:Cthe_0965 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 3720480 5313703 Amet_3622 Alkaliphilus metalliredigens QYMF ATP:corrinoid adenosyltransferase BtuR/CobO/CobP YP_001321403.1 3719938 R 293826 CDS YP_001321404.1 150391355 5313704 complement(3720502..3721065) 1 NC_009633.1 PFAM: cobalbumin biosynthesis protein; KEGG: cac:CAC1383 adenosyl cobinamide kinase/adenosyl cobinamide phosphate; adenosylcobinamide-phosphate guanylyltransferase 3721065 5313704 Amet_3623 Alkaliphilus metalliredigens QYMF adenosylcobinamide-phosphate guanylyltransferase YP_001321404.1 3720502 R 293826 CDS YP_001321405.1 150391356 5313705 complement(3721419..3722744) 1 NC_009633.1 KEGG: bca:BCE_1868 hypothetical protein; hypothetical protein 3722744 5313705 Amet_3624 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321405.1 3721419 R 293826 CDS YP_001321406.1 150391357 5313706 complement(3722813..3723505) 1 NC_009633.1 KEGG: cth:Cthe_1061 hypothetical protein; hypothetical protein 3723505 5313706 Amet_3625 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321406.1 3722813 R 293826 CDS YP_001321407.1 150391358 5313707 complement(3723622..3725079) 1 NC_009633.1 PFAM: VanW family protein; G5 domain protein; KEGG: tte:TTE1768 hypothetical protein; VanW family protein 3725079 5313707 Amet_3626 Alkaliphilus metalliredigens QYMF VanW family protein YP_001321407.1 3723622 R 293826 CDS YP_001321408.1 150391359 5313708 complement(3725221..3727143) 1 NC_009633.1 PFAM: cell division protein FtsA; KEGG: ctc:CTC00985 cell division protein FtsA; cell division protein FtsA 3727143 5313708 Amet_3627 Alkaliphilus metalliredigens QYMF cell division protein FtsA YP_001321408.1 3725221 R 293826 CDS YP_001321409.1 150391360 5313709 complement(3727241..3727891) 1 NC_009633.1 KEGG: tte:TTE1769 predicted EndoIII-related endonuclease; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop; endonuclease III 3727891 5313709 Amet_3628 Alkaliphilus metalliredigens QYMF endonuclease III YP_001321409.1 3727241 R 293826 CDS YP_001321410.1 150391361 5313710 complement(3727926..3728207) 1 NC_009633.1 PFAM: protein of unknown function DUF503; KEGG: cth:Cthe_0584 protein of unknown function DUF503; hypothetical protein 3728207 5313710 Amet_3629 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321410.1 3727926 R 293826 CDS YP_001321411.1 150391362 5313711 complement(3728314..3731397) 1 NC_009633.1 PFAM: acriflavin resistance protein; KEGG: dsy:DSY3359 hypothetical protein; acriflavin resistance protein 3731397 5313711 Amet_3630 Alkaliphilus metalliredigens QYMF acriflavin resistance protein YP_001321411.1 3728314 R 293826 CDS YP_001321412.1 150391363 5313712 complement(3731394..3732437) 1 NC_009633.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dsy:DSY3360 hypothetical protein; RND family efflux transporter MFP subunit 3732437 5313712 Amet_3631 Alkaliphilus metalliredigens QYMF RND family efflux transporter MFP subunit YP_001321412.1 3731394 R 293826 CDS YP_001321413.1 150391364 5313713 complement(3732505..3733083) 1 NC_009633.1 hypothetical protein 3733083 5313713 Amet_3632 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321413.1 3732505 R 293826 CDS YP_001321414.1 150391365 5313714 complement(3733334..3733855) 1 NC_009633.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: oih:OB1538 signal peptidase I; signal peptidase I 3733855 5313714 Amet_3633 Alkaliphilus metalliredigens QYMF signal peptidase I YP_001321414.1 3733334 R 293826 CDS YP_001321415.1 150391366 5313715 complement(3734177..3735364) 1 NC_009633.1 TIGRFAM: 8-amino-7-oxononanoate synthase; pyridoxal phosphate-dependent acyltransferase, putative; PFAM: aminotransferase, class I and II; KEGG: tde:TDE2194 8-amino-7-oxononanoate synthase, putative; pyridoxal phosphate-dependent acyltransferase 3735364 5313715 Amet_3634 Alkaliphilus metalliredigens QYMF pyridoxal phosphate-dependent acyltransferase YP_001321415.1 3734177 R 293826 CDS YP_001321416.1 150391367 5313716 complement(3735807..3738164) 1 NC_009633.1 KEGG: tte:TTE1771 predicted ATP-dependent protease; ATP-dependent protease 3738164 5313716 Amet_3635 Alkaliphilus metalliredigens QYMF ATP-dependent protease YP_001321416.1 3735807 R 293826 CDS YP_001321417.1 150391368 5313717 complement(3738262..3739374) 1 NC_009633.1 PFAM: HEAT domain containing protein; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: ser:SERP1392 iron-sulfur cluster-binding protein, putative; hypothetical protein 3739374 5313717 Amet_3636 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321417.1 3738262 R 293826 CDS YP_001321418.1 150391369 5313718 complement(3739464..3740003) 1 NC_009633.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: oih:OB1538 signal peptidase I; signal peptidase I 3740003 5313718 Amet_3637 Alkaliphilus metalliredigens QYMF signal peptidase I YP_001321418.1 3739464 R 293826 CDS YP_001321419.1 150391370 5313719 3740094..3740519 1 NC_009633.1 PFAM: endodeoxyribonuclease RusA; KEGG: cno:NT01CX_0479 hypothetical protein; endodeoxyribonuclease RusA 3740519 5313719 Amet_3638 Alkaliphilus metalliredigens QYMF endodeoxyribonuclease RusA YP_001321419.1 3740094 D 293826 CDS YP_001321420.1 150391371 5313720 complement(3740714..3741196) 1 NC_009633.1 PFAM: protein of unknown function DUF456; KEGG: xoo:XOO1509 hypothetical protein; hypothetical protein 3741196 5313720 Amet_3639 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321420.1 3740714 R 293826 CDS YP_001321421.1 150391372 5313721 complement(3741295..3741873) 1 NC_009633.1 PFAM: regulatory protein, ArsR; KEGG: cpr:CPR_1606 transcriptional regulatory protein, putative; regulatory protein ArsR 3741873 5313721 Amet_3640 Alkaliphilus metalliredigens QYMF regulatory protein ArsR YP_001321421.1 3741295 R 293826 CDS YP_001321422.1 150391373 5313722 complement(3741979..3742830) 1 NC_009633.1 PFAM: nitroreductase; KEGG: dsy:DSY1470 hypothetical protein; nitroreductase 3742830 5313722 Amet_3641 Alkaliphilus metalliredigens QYMF nitroreductase YP_001321422.1 3741979 R 293826 CDS YP_001321423.1 150391374 5313723 complement(3742844..3743761) 1 NC_009633.1 catalyzes the formation of glutamate from glutamine; glutaminase 3743761 5313723 Amet_3642 Alkaliphilus metalliredigens QYMF glutaminase YP_001321423.1 3742844 R 293826 CDS YP_001321424.1 150391375 5313724 complement(3743808..3745532) 1 NC_009633.1 PFAM: phosphoribulokinase/uridine kinase; KEGG: cth:Cthe_0332 phosphoribulokinase/uridine kinase; phosphoribulokinase/uridine kinase 3745532 5313724 Amet_3643 Alkaliphilus metalliredigens QYMF phosphoribulokinase/uridine kinase YP_001321424.1 3743808 R 293826 CDS YP_001321425.1 150391376 5313725 complement(3745612..3746046) 1 NC_009633.1 PFAM: CBS domain containing protein; KEGG: cth:Cthe_2352 putative signal-transduction protein with CBS domains; signal-transduction protein 3746046 5313725 Amet_3644 Alkaliphilus metalliredigens QYMF signal-transduction protein YP_001321425.1 3745612 R 293826 CDS YP_001321426.1 150391377 5313726 complement(3746141..3746935) 1 NC_009633.1 TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: tte:TTE1277 glutamate 5-kinase; glutamate 5-kinase 3746935 5313726 Amet_3645 Alkaliphilus metalliredigens QYMF glutamate 5-kinase YP_001321426.1 3746141 R 293826 CDS YP_001321427.1 150391378 5313727 complement(3746944..3748188) 1 NC_009633.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 3748188 proA 5313727 proA Alkaliphilus metalliredigens QYMF gamma-glutamyl phosphate reductase YP_001321427.1 3746944 R 293826 CDS YP_001321428.1 150391379 5313728 complement(3748602..3749135) 1 NC_009633.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: ctc:CTC01253 putative signal peptidase I; signal peptidase I 3749135 5313728 Amet_3647 Alkaliphilus metalliredigens QYMF signal peptidase I YP_001321428.1 3748602 R 293826 CDS YP_001321429.1 150391380 5313729 complement(3749257..3749613) 1 NC_009633.1 KEGG: bce:BC4676 hypothetical cytosolic protein; hypothetical protein 3749613 5313729 Amet_3648 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321429.1 3749257 R 293826 CDS YP_001321430.1 150391381 5313730 3749860..3750438 1 NC_009633.1 hypothetical protein 3750438 5313730 Amet_3649 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321430.1 3749860 D 293826 CDS YP_001321431.1 150391382 5313731 complement(3750620..3751285) 1 NC_009633.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cno:NT01CX_1005 HAD-superfamily hydrolase, putative; HAD family hydrolase 3751285 5313731 Amet_3650 Alkaliphilus metalliredigens QYMF HAD family hydrolase YP_001321431.1 3750620 R 293826 CDS YP_001321432.1 150391383 5313732 complement(3751375..3752082) 1 NC_009633.1 KEGG: cno:NT01CX_1222 hypothetical protein; hypothetical protein 3752082 5313732 Amet_3651 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321432.1 3751375 R 293826 CDS YP_001321433.1 150391384 5313733 complement(3752163..3752747) 1 NC_009633.1 PFAM: NAD(P)H dehydrogenase (quinone); KEGG: bca:BCE_5095 NAD(P)H dehydrogenase, quinone family; NAD(P)H dehydrogenase (quinone) 3752747 5313733 Amet_3652 Alkaliphilus metalliredigens QYMF NAD(P)H dehydrogenase (quinone) YP_001321433.1 3752163 R 293826 CDS YP_001321434.1 150391385 5313734 complement(3752955..3753527) 1 NC_009633.1 PFAM: manganese containing catalase; KEGG: ctc:CTC00870 spore coat protein; manganese containing catalase 3753527 5313734 Amet_3653 Alkaliphilus metalliredigens QYMF manganese containing catalase YP_001321434.1 3752955 R 293826 CDS YP_001321435.1 150391386 5313735 complement(3753548..3753814) 1 NC_009633.1 KEGG: tte:TTE1800 spore coat peptide assembly protein cotJB; spore coat peptide assembly protein cotJB 3753814 5313735 Amet_3654 Alkaliphilus metalliredigens QYMF spore coat peptide assembly protein cotJB YP_001321435.1 3753548 R 293826 CDS YP_001321436.1 150391387 5313736 complement(3753814..3754041) 1 NC_009633.1 hypothetical protein 3754041 5313736 Amet_3655 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321436.1 3753814 R 293826 CDS YP_001321437.1 150391388 5313737 complement(3754278..3754796) 1 NC_009633.1 PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: cno:NT01CX_0653 peptidyl-prolyl cis-trans isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase 3754796 5313737 Amet_3656 Alkaliphilus metalliredigens QYMF cyclophilin type peptidyl-prolyl cis-trans isomerase YP_001321437.1 3754278 R 293826 CDS YP_001321438.1 150391389 5313738 complement(3755037..3755879) 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bsu:BG13543 hypothetical protein; N-acetyltransferase GCN5 3755879 5313738 Amet_3657 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001321438.1 3755037 R 293826 CDS YP_001321439.1 150391390 5313739 complement(3756441..3757550) 1 NC_009633.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 3757550 mnmA 5313739 mnmA Alkaliphilus metalliredigens QYMF tRNA-specific 2-thiouridylase MnmA YP_001321439.1 3756441 R 293826 CDS YP_001321440.1 150391391 5313740 complement(3757899..3758624) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lin:lin2353 similar to amino acid ABC transporter (ATP-binding protein); ABC transporter-like protein 3758624 5313740 Amet_3659 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321440.1 3757899 R 293826 CDS YP_001321441.1 150391392 5313741 complement(3758629..3759312) 1 NC_009633.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_3743 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; polar amino acid ABC transporter inner membrane subunit 3759312 5313741 Amet_3660 Alkaliphilus metalliredigens QYMF polar amino acid ABC transporter inner membrane subunit YP_001321441.1 3758629 R 293826 CDS YP_001321442.1 150391393 5313742 complement(3759395..3760237) 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 3; KEGG: bat:BAS0353 amino acid ABC transporter, solute binding protein; extracellular solute-binding protein 3760237 5313742 Amet_3661 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001321442.1 3759395 R 293826 CDS YP_001321443.1 150391394 5313743 3760680..3761798 1 NC_009633.1 PFAM: NLP/P60 protein; protein of unknown function DUF1058; SH3, type 3 domain protein; SMART: SH3 domain protein; KEGG: tte:TTE0880 cell wall-associated hydrolase (invasion-associated proteins); NLP/P60 protein 3761798 5313743 Amet_3662 Alkaliphilus metalliredigens QYMF NLP/P60 protein YP_001321443.1 3760680 D 293826 CDS YP_001321444.1 150391395 5313744 complement(3762312..3762662) 1 NC_009633.1 hypothetical protein 3762662 5313744 Amet_3663 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321444.1 3762312 R 293826 CDS YP_001321445.1 150391396 5313746 3763130..3764767 1 NC_009633.1 KEGG: cac:CAC0367 arginine degradation protein (gene RocB); arginine degradation protein RocB 3764767 5313746 Amet_3665 Alkaliphilus metalliredigens QYMF arginine degradation protein RocB YP_001321445.1 3763130 D 293826 CDS YP_001321446.1 150391397 5313748 complement(3764939..3765376) 1 NC_009633.1 hypothetical protein 3765376 5313748 Amet_3667 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321446.1 3764939 R 293826 CDS YP_001321447.1 150391398 5313749 complement(3765724..3766119) 1 NC_009633.1 KEGG: tte:TTE0912 hypothetical protein; hypothetical protein 3766119 5313749 Amet_3668 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321447.1 3765724 R 293826 CDS YP_001321448.1 150391399 5313750 complement(3766236..3768431) 1 NC_009633.1 PFAM: S-layer domain protein; protein of unknown function DUF187; KEGG: cth:Cthe_0054 protein of unknown function DUF187; hypothetical protein 3768431 5313750 Amet_3669 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321448.1 3766236 R 293826 CDS YP_001321449.1 150391400 5313751 complement(3768799..3768957) 1 NC_009633.1 hypothetical protein 3768957 5313751 Amet_3670 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321449.1 3768799 R 293826 CDS YP_001321450.1 150391401 5313752 complement(3769231..3770586) 1 NC_009633.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: putative RNA methylase; deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: ctc:CTC01941 tRNA (uracil-5-) -methyltransferase; RNA methyltransferase 3770586 5313752 Amet_3671 Alkaliphilus metalliredigens QYMF RNA methyltransferase YP_001321450.1 3769231 R 293826 CDS YP_001321451.1 150391402 5313753 complement(3770598..3771329) 1 NC_009633.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: bce:BC4704 ribosomal small subunit pseudouridine synthase A; pseudouridine synthase 3771329 5313753 Amet_3672 Alkaliphilus metalliredigens QYMF pseudouridine synthase YP_001321451.1 3770598 R 293826 CDS YP_001321452.1 150391403 5313754 complement(3771409..3771960) 1 NC_009633.1 KEGG: cth:Cthe_0084 hypothetical protein; hypothetical protein 3771960 5313754 Amet_3673 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321452.1 3771409 R 293826 CDS YP_001321453.1 150391404 5313755 complement(3772058..3772573) 1 NC_009633.1 TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cno:NT01CX_1384 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-diacylglycerol--serine O-phosphatidyltransferase 3772573 5313755 Amet_3674 Alkaliphilus metalliredigens QYMF CDP-diacylglycerol--serine O-phosphatidyltransferase YP_001321453.1 3772058 R 293826 CDS YP_001321454.1 150391405 5313756 3773080..3774009 1 NC_009633.1 TIGRFAM: ketose-bisphosphate aldolase; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase, class-II; KEGG: cth:Cthe_0349 fructose-1,6-bisphosphate aldolase, class II; fructose-1,6-bisphosphate aldolase 3774009 5313756 Amet_3675 Alkaliphilus metalliredigens QYMF fructose-1,6-bisphosphate aldolase YP_001321454.1 3773080 D 293826 CDS YP_001321455.1 150391406 5313757 3774132..3775271 1 NC_009633.1 KEGG: uur:UU520 hypothetical protein; hypothetical protein 3775271 5313757 Amet_3676 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321455.1 3774132 D 293826 CDS YP_001321456.1 150391407 5313758 complement(3775291..3775980) 1 NC_009633.1 PFAM: metallophosphoesterase; KEGG: cno:NT01CX_1367 predicted phoshohydrolase; metallophosphoesterase 3775980 5313758 Amet_3677 Alkaliphilus metalliredigens QYMF metallophosphoesterase YP_001321456.1 3775291 R 293826 CDS YP_001321457.1 150391408 5313759 complement(3776007..3776810) 1 NC_009633.1 PFAM: RelA/SpoT domain protein; KEGG: ctc:CTC00336 GTP pyrophosphokinase; RelA/SpoT domain-containing protein 3776810 5313759 Amet_3678 Alkaliphilus metalliredigens QYMF RelA/SpoT domain-containing protein YP_001321457.1 3776007 R 293826 CDS YP_001321458.1 150391409 5313760 complement(3777114..3778127) 1 NC_009633.1 TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: chy:CHY_0280 glyceraldehyde-3-phosphate dehydrogenase, type I; glyceraldehyde-3-phosphate dehydrogenase, type I 3778127 5313760 Amet_3679 Alkaliphilus metalliredigens QYMF glyceraldehyde-3-phosphate dehydrogenase, type I YP_001321458.1 3777114 R 293826 CDS YP_001321459.1 150391410 5313761 3778507..3778731 1 NC_009633.1 Contains selenocysteine; TIGRFAM: conserved hypothetical selenoprotein; KEGG: mfa:Mfla_0384 SelT/SelW/SelH selenoprotein; putative selenoprotein 3778731 5313761 Amet_3680 Alkaliphilus metalliredigens QYMF putative selenoprotein YP_001321459.1 3778507 D 293826 CDS YP_001321460.1 150391411 5313762 complement(3778753..3779172) 1 NC_009633.1 KEGG: cno:NT01CX_1363 hypothetical protein; hypothetical protein 3779172 5313762 Amet_3681 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321460.1 3778753 R 293826 CDS YP_001321461.1 150391412 5313763 complement(3779271..3780218) 1 NC_009633.1 TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_0370 conserved hypothetical radical SAM protein; putative radical SAM protein 3780218 5313763 Amet_3682 Alkaliphilus metalliredigens QYMF putative radical SAM protein YP_001321461.1 3779271 R 293826 CDS YP_001321462.1 150391413 5313764 complement(3780193..3781485) 1 NC_009633.1 PFAM: major facilitator superfamily MFS_1; KEGG: dsy:DSY0432 hypothetical protein; major facilitator superfamily transporter 3781485 5313764 Amet_3683 Alkaliphilus metalliredigens QYMF major facilitator superfamily transporter YP_001321462.1 3780193 R 293826 CDS YP_001321463.1 150391414 5313765 complement(3781549..3781953) 1 NC_009633.1 KEGG: cth:Cthe_3089 UspA; hypothetical protein 3781953 5313765 Amet_3684 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321463.1 3781549 R 293826 CDS YP_001321464.1 150391415 5313766 complement(3782102..3783769) 1 NC_009633.1 PFAM: S-layer domain protein; glycoside hydrolase, family 18; SMART: chitinase II; KEGG: swo:Swol_0141 hypothetical protein; glycoside hydrolase 3783769 5313766 Amet_3685 Alkaliphilus metalliredigens QYMF glycoside hydrolase YP_001321464.1 3782102 R 293826 CDS YP_001321465.1 150391416 5313767 complement(3784013..3784828) 1 NC_009633.1 PFAM: Peptidoglycan-binding LysM; KEGG: mta:Moth_1271 peptidoglycan-binding LysM; peptidoglycan-binding protein LysM 3784828 5313767 Amet_3686 Alkaliphilus metalliredigens QYMF peptidoglycan-binding protein LysM YP_001321465.1 3784013 R 293826 CDS YP_001321466.1 150391417 5313768 complement(3784980..3785510) 1 NC_009633.1 Contains selenocysteine; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: gvi:glr2368 hypothetical protein; alkylhydroperoxidase 3785510 5313768 Amet_3687 Alkaliphilus metalliredigens QYMF alkylhydroperoxidase YP_001321466.1 3784980 R 293826 CDS YP_001321467.1 150391418 5313769 complement(3785684..3785872) 1 NC_009633.1 PFAM: protein of unknown function DUF378; KEGG: sth:STH346 hypothetical protein; hypothetical protein 3785872 5313769 Amet_3688 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321467.1 3785684 R 293826 CDS YP_001321468.1 150391419 5313770 complement(3785986..3786360) 1 NC_009633.1 hypothetical protein 3786360 5313770 Amet_3689 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321468.1 3785986 R 293826 CDS YP_001321469.1 150391420 5313771 complement(3786452..3787393) 1 NC_009633.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: cac:CAC0365 phosphoglycerate dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 3787393 5313771 Amet_3690 Alkaliphilus metalliredigens QYMF D-isomer specific 2-hydroxyacid dehydrogenase YP_001321469.1 3786452 R 293826 CDS YP_001321470.1 150391421 5313772 3787627..3788109 1 NC_009633.1 KEGG: cno:NT01CX_0854 hypothetical protein; putative metal dependent phosphohydrolase 3788109 5313772 Amet_3691 Alkaliphilus metalliredigens QYMF putative metal dependent phosphohydrolase YP_001321470.1 3787627 D 293826 CDS YP_001321471.1 150391422 5313773 complement(3788203..3789813) 1 NC_009633.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: cth:Cthe_0328 peptide chain release factor 3; peptide chain release factor 3 3789813 5313773 Amet_3692 Alkaliphilus metalliredigens QYMF peptide chain release factor 3 YP_001321471.1 3788203 R 293826 CDS YP_001321472.1 150391423 5313774 complement(3789996..3790517) 1 NC_009633.1 KEGG: tte:TTE0937 hypothetical protein; hypothetical protein 3790517 5313774 Amet_3693 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321472.1 3789996 R 293826 CDS YP_001321473.1 150391424 5313775 complement(3790733..3791680) 1 NC_009633.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: tte:TTE2399 permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 3791680 5313775 Amet_3694 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321473.1 3790733 R 293826 CDS YP_001321474.1 150391425 5313776 complement(3791798..3792301) 1 NC_009633.1 KEGG: cac:CAC3417 flavodoxin; flavodoxin 3792301 5313776 Amet_3695 Alkaliphilus metalliredigens QYMF flavodoxin YP_001321474.1 3791798 R 293826 CDS YP_001321475.1 150391426 5313777 complement(3792339..3792908) 1 NC_009633.1 PFAM: nitroreductase; KEGG: cth:Cthe_0579 nitroreductase; nitroreductase 3792908 5313777 Amet_3696 Alkaliphilus metalliredigens QYMF nitroreductase YP_001321475.1 3792339 R 293826 CDS YP_001321476.1 150391427 5313778 complement(3792940..3793416) 1 NC_009633.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 3793416 5313778 Amet_3697 Alkaliphilus metalliredigens QYMF methionine sulfoxide reductase A YP_001321476.1 3792940 R 293826 CDS YP_001321477.1 150391428 5313779 3793661..3795901 1 NC_009633.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; GAF domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: syf:Synpcc7942_2096 diguanylate cyclase (GGDEF domain); diguanylate cyclase 3795901 5313779 Amet_3698 Alkaliphilus metalliredigens QYMF diguanylate cyclase YP_001321477.1 3793661 D 293826 CDS YP_001321478.1 150391429 5313780 complement(3796151..3796714) 1 NC_009633.1 KEGG: tte:TTE0519 hypothetical protein; hypothetical protein 3796714 5313780 Amet_3699 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321478.1 3796151 R 293826 CDS YP_001321479.1 150391430 5313781 complement(3796704..3797987) 1 NC_009633.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase, HD region; KEGG: tte:TTE0518 HD-GYP domain; metal dependent phosphohydrolase 3797987 5313781 Amet_3700 Alkaliphilus metalliredigens QYMF metal dependent phosphohydrolase YP_001321479.1 3796704 R 293826 CDS YP_001321480.1 150391431 5313782 complement(3798217..3798858) 1 NC_009633.1 KEGG: tte:TTE0517 hypothetical protein; hypothetical protein 3798858 5313782 Amet_3701 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321480.1 3798217 R 293826 CDS YP_001321481.1 150391432 5313783 3799110..3800495 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: pto:PTO0564 pyridoxal-phosphate dependent enzyme; N-acetyltransferase GCN5 3800495 5313783 Amet_3702 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001321481.1 3799110 D 293826 CDS YP_001321482.1 150391433 5313784 3800751..3801878 1 NC_009633.1 KEGG: cth:Cthe_2170 hypothetical protein; hypothetical protein 3801878 5313784 Amet_3703 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321482.1 3800751 D 293826 CDS YP_001321483.1 150391434 5313785 complement(3801952..3803334) 1 NC_009633.1 PFAM: Na+/H+ antiporter NhaC; KEGG: btk:BT9727_0310 Na+/H+ antiporter; Na+/H+ antiporter NhaC 3803334 5313785 Amet_3704 Alkaliphilus metalliredigens QYMF Na+/H+ antiporter NhaC YP_001321483.1 3801952 R 293826 CDS YP_001321484.1 150391435 5313786 complement(3803522..3804301) 1 NC_009633.1 KEGG: swo:Swol_1911 hypothetical protein; hypothetical protein 3804301 5313786 Amet_3705 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321484.1 3803522 R 293826 CDS YP_001321485.1 150391436 5313787 complement(3804386..3805528) 1 NC_009633.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: cac:CAC0391 cystathionine beta-lyase; cystathionine gamma-synthase 3805528 5313787 Amet_3706 Alkaliphilus metalliredigens QYMF cystathionine gamma-synthase YP_001321485.1 3804386 R 293826 CDS YP_001321486.1 150391437 5313788 complement(3805534..3806691) 1 NC_009633.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: cth:Cthe_2799 cystathionine gamma-synthase; cystathionine gamma-synthase 3806691 5313788 Amet_3707 Alkaliphilus metalliredigens QYMF cystathionine gamma-synthase YP_001321486.1 3805534 R 293826 CDS YP_001321487.1 150391438 5313789 complement(3806714..3807661) 1 NC_009633.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 3807661 5313789 Amet_3708 Alkaliphilus metalliredigens QYMF homoserine O-succinyltransferase YP_001321487.1 3806714 R 293826 CDS YP_001321488.1 150391439 5313790 complement(3808055..3809428) 1 NC_009633.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; KEGG: bat:BAS0232 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 3809428 5313790 Amet_3709 Alkaliphilus metalliredigens QYMF UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase YP_001321488.1 3808055 R 293826 CDS YP_001321489.1 150391440 5313791 complement(3809434..3810510) 1 NC_009633.1 TIGRFAM: D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; KEGG: bca:BCE_0265 D-alanylalanine synthetase; D-alanine--D-alanine ligase 3810510 5313791 Amet_3710 Alkaliphilus metalliredigens QYMF D-alanine--D-alanine ligase YP_001321489.1 3809434 R 293826 CDS YP_001321490.1 150391441 5313792 complement(3810599..3812713) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: cpr:CPR_0449 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 3812713 5313792 Amet_3711 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001321490.1 3810599 R 293826 CDS YP_001321491.1 150391442 5313793 complement(3812691..3813389) 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpf:CPF_0459 DNA-binding response regulator; two component transcriptional regulator 3813389 5313793 Amet_3712 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001321491.1 3812691 R 293826 CDS YP_001321492.1 150391443 5313794 3813664..3814434 1 NC_009633.1 PFAM: protein of unknown function DUF833; KEGG: swo:Swol_2245 hypothetical protein; hypothetical protein 3814434 5313794 Amet_3713 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321492.1 3813664 D 293826 CDS YP_001321493.1 150391444 5313795 complement(3814435..3815910) 1 NC_009633.1 PFAM: copper amine oxidase domain protein; KEGG: swo:Swol_1696 hypothetical protein; copper amine oxidase domain-containing protein 3815910 5313795 Amet_3714 Alkaliphilus metalliredigens QYMF copper amine oxidase domain-containing protein YP_001321493.1 3814435 R 293826 CDS YP_001321494.1 150391445 5313796 complement(3815940..3816545) 1 NC_009633.1 PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: bcl:ABC2125 two-component response regulator; two component LuxR family transcriptional regulator 3816545 5313796 Amet_3715 Alkaliphilus metalliredigens QYMF two component LuxR family transcriptional regulator YP_001321494.1 3815940 R 293826 CDS YP_001321495.1 150391446 5313797 complement(3816550..3817647) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: bcl:ABC2124 two-component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 3817647 5313797 Amet_3716 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001321495.1 3816550 R 293826 CDS YP_001321496.1 150391447 5313798 complement(3817809..3818495) 1 NC_009633.1 PFAM: ABC-2 type transporter; KEGG: bcl:ABC2123 multidrug ABC transporter permease; ABC transporter 3818495 5313798 Amet_3717 Alkaliphilus metalliredigens QYMF ABC transporter YP_001321496.1 3817809 R 293826 CDS YP_001321497.1 150391448 5313799 complement(3818492..3819226) 1 NC_009633.1 PFAM: ABC-2 type transporter; KEGG: bcl:ABC2122 multidrug ABC transporter permease; ABC transporter 3819226 5313799 Amet_3718 Alkaliphilus metalliredigens QYMF ABC transporter YP_001321497.1 3818492 R 293826 CDS YP_001321498.1 150391449 5313800 complement(3819223..3820173) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcl:ABC2121 multidrug ABC transporter ATP-binding protein; ABC transporter-like protein 3820173 5313800 Amet_3719 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321498.1 3819223 R 293826 CDS YP_001321499.1 150391450 5313801 3820420..3820893 1 NC_009633.1 TIGRFAM: C_GCAxxG_C_C family protein; KEGG: efa:EF0664 hypothetical protein; C_GCAxxG_C_C family protein 3820893 5313801 Amet_3720 Alkaliphilus metalliredigens QYMF C_GCAxxG_C_C family protein YP_001321499.1 3820420 D 293826 CDS YP_001321500.1 150391451 5313802 3820967..3821929 1 NC_009633.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: efa:EF0645 exfoliative toxin A, putative; C4-dicarboxylate transporter/malic acid transport protein 3821929 5313802 Amet_3721 Alkaliphilus metalliredigens QYMF C4-dicarboxylate transporter/malic acid transport protein YP_001321500.1 3820967 D 293826 CDS YP_001321501.1 150391452 5313803 complement(3822061..3822762) 1 NC_009633.1 PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: ctc:CTC01876 transcriptional regulatory protein; CRP/FNR family transcriptional regulator 3822762 5313803 Amet_3722 Alkaliphilus metalliredigens QYMF CRP/FNR family transcriptional regulator YP_001321501.1 3822061 R 293826 CDS YP_001321502.1 150391453 5313804 complement(3823145..3824368) 1 NC_009633.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: ctc:CTC01875 flavodoxin; beta-lactamase domain-containing protein 3824368 5313804 Amet_3723 Alkaliphilus metalliredigens QYMF beta-lactamase domain-containing protein YP_001321502.1 3823145 R 293826 CDS YP_001321503.1 150391454 5313805 3824503..3824748 1 NC_009633.1 KEGG: sth:STH1728 hypothetical protein, glutamine-rich; glutamine-rich 3824748 5313805 Amet_3724 Alkaliphilus metalliredigens QYMF glutamine-rich YP_001321503.1 3824503 D 293826 CDS YP_001321504.1 150391455 5313806 3824760..3826073 1 NC_009633.1 PFAM: Chloride channel, core; KEGG: bha:BH0663 hypothetical protein; chloride channel core protein 3826073 5313806 Amet_3725 Alkaliphilus metalliredigens QYMF chloride channel core protein YP_001321504.1 3824760 D 293826 CDS YP_001321505.1 150391456 5313807 complement(3826127..3826837) 1 NC_009633.1 PFAM: protein of unknown function DUF421; KEGG: dsy:DSY3481 hypothetical protein; hypothetical protein 3826837 5313807 Amet_3726 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321505.1 3826127 R 293826 CDS YP_001321506.1 150391457 5313808 complement(3827046..3828323) 1 NC_009633.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: maq:Maqu_0352 TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM 3828323 5313808 Amet_3727 Alkaliphilus metalliredigens QYMF TRAP dicarboxylate transporter subunit DctM YP_001321506.1 3827046 R 293826 CDS YP_001321507.1 150391458 5313809 complement(3828339..3828977) 1 NC_009633.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: sil:SPO1146 TRAP dicarboxylate transporter, DctQ subunit; tripartite ATP-independent periplasmic transporter DctQ 3828977 5313809 Amet_3728 Alkaliphilus metalliredigens QYMF tripartite ATP-independent periplasmic transporter DctQ YP_001321507.1 3828339 R 293826 CDS YP_001321508.1 150391459 5313810 complement(3829051..3830190) 1 NC_009633.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hha:Hhal_0448 TRAP dicarboxylate transporter-DctP subunit; TRAP dicarboxylate transporter subunit DctP 3830190 5313810 Amet_3729 Alkaliphilus metalliredigens QYMF TRAP dicarboxylate transporter subunit DctP YP_001321508.1 3829051 R 293826 CDS YP_001321509.1 150391460 5313812 3831527..3832246 1 NC_009633.1 PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cno:NT01CX_1282 PHP family protein; putative hydrolase 3832246 5313812 Amet_3731 Alkaliphilus metalliredigens QYMF putative hydrolase YP_001321509.1 3831527 D 293826 CDS YP_001321510.1 150391461 5313813 complement(3832306..3832716) 1 NC_009633.1 hypothetical protein 3832716 5313813 Amet_3732 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321510.1 3832306 R 293826 CDS YP_001321511.1 150391462 5313814 complement(3832745..3833134) 1 NC_009633.1 hypothetical protein 3833134 5313814 Amet_3733 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321511.1 3832745 R 293826 CDS YP_001321512.1 150391463 5313815 complement(3833347..3833610) 1 NC_009633.1 hypothetical protein 3833610 5313815 Amet_3734 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321512.1 3833347 R 293826 CDS YP_001321513.1 150391464 5313816 3834047..3834865 1 NC_009633.1 PFAM: nitroreductase; KEGG: dsy:DSY1470 hypothetical protein; nitroreductase 3834865 5313816 Amet_3735 Alkaliphilus metalliredigens QYMF nitroreductase YP_001321513.1 3834047 D 293826 CDS YP_001321514.1 150391465 5313817 complement(3834932..3835504) 1 NC_009633.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bsu:BG13855 similar to thiol peroxidase; redoxin domain-containing protein 3835504 5313817 Amet_3736 Alkaliphilus metalliredigens QYMF redoxin domain-containing protein YP_001321514.1 3834932 R 293826 CDS YP_001321515.1 150391466 5313818 complement(3835638..3836840) 1 NC_009633.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tte:TTE0596 metal-dependent amidase/aminoacylase/carboxypeptidase; amidohydrolase 3836840 5313818 Amet_3737 Alkaliphilus metalliredigens QYMF amidohydrolase YP_001321515.1 3835638 R 293826 CDS YP_001321516.1 150391467 5313819 3837113..3838156 1 NC_009633.1 PFAM: conserved hypothetical protein 698; KEGG: ctc:CTC01844 membrane spanning protein, similar to vegetatible incompatibility protein HET-E-1; hypothetical protein 3838156 5313819 Amet_3738 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321516.1 3837113 D 293826 CDS YP_001321517.1 150391468 5313820 complement(3838151..3838342) 1 NC_009633.1 KEGG: pin:Ping_1432 hypothetical protein; hypothetical protein 3838342 5313820 Amet_3739 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321517.1 3838151 R 293826 CDS YP_001321518.1 150391469 5313821 3838579..3839499 1 NC_009633.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: mmp:MMP0210 hypothetical protein; hypothetical protein 3839499 5313821 Amet_3740 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321518.1 3838579 D 293826 CDS YP_001321519.1 150391470 5313822 complement(3839865..3840383) 1 NC_009633.1 hypothetical protein 3840383 5313822 Amet_3741 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321519.1 3839865 R 293826 CDS YP_001321520.1 150391471 5313823 complement(3840575..3841114) 1 NC_009633.1 KEGG: swo:Swol_1797 hypothetical protein; hypothetical protein 3841114 5313823 Amet_3742 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321520.1 3840575 R 293826 CDS YP_001321521.1 150391472 5313824 complement(3841714..3842535) 1 NC_009633.1 PFAM: N-formylglutamate amidohydrolase; KEGG: sil:SPOA0448 N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 3842535 5313824 Amet_3743 Alkaliphilus metalliredigens QYMF N-formylglutamate amidohydrolase YP_001321521.1 3841714 R 293826 CDS YP_001321522.1 150391473 5313825 complement(3842538..3844682) 1 NC_009633.1 PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; RimK domain protein ATP-grasp; KEGG: bja:bll8229 hypothetical protein; D-alanine--D-alanine ligase 3844682 5313825 Amet_3744 Alkaliphilus metalliredigens QYMF D-alanine--D-alanine ligase YP_001321522.1 3842538 R 293826 CDS YP_001321523.1 150391474 5313826 complement(3844685..3846322) 1 NC_009633.1 TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: bja:bll8231 putative gamma-glutamyltranspeptidase; gamma-glutamyltransferase 3846322 5313826 Amet_3745 Alkaliphilus metalliredigens QYMF gamma-glutamyltransferase YP_001321523.1 3844685 R 293826 CDS YP_001321524.1 150391475 5313827 complement(3846788..3848098) 1 NC_009633.1 KEGG: cac:CAC0769 hypothetical protein; hypothetical protein 3848098 5313827 Amet_3746 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321524.1 3846788 R 293826 CDS YP_001321525.1 150391476 5313828 complement(3848162..3849577) 1 NC_009633.1 PFAM: FAD linked oxidase domain protein; KEGG: tte:TTE0224 FAD/FMN-containing dehydrogenases; FAD linked oxidase domain-containing protein 3849577 5313828 Amet_3747 Alkaliphilus metalliredigens QYMF FAD linked oxidase domain-containing protein YP_001321525.1 3848162 R 293826 CDS YP_001321526.1 150391477 5313829 complement(3849555..3850580) 1 NC_009633.1 PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; KEGG: tte:TTE0547 Electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein subunit alpha-like protein 3850580 5313829 Amet_3748 Alkaliphilus metalliredigens QYMF electron transfer flavoprotein subunit alpha-like protein YP_001321526.1 3849555 R 293826 CDS YP_001321527.1 150391478 5313830 complement(3850594..3851391) 1 NC_009633.1 PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; KEGG: sfu:Sfum_1372 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit alpha/beta-like protein 3851391 5313830 Amet_3749 Alkaliphilus metalliredigens QYMF electron transfer flavoprotein subunit alpha/beta-like protein YP_001321527.1 3850594 R 293826 CDS YP_001321528.1 150391479 5313831 complement(3851509..3852213) 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: mta:Moth_2304 GntR-like; GntR family transcriptional regulator 3852213 5313831 Amet_3750 Alkaliphilus metalliredigens QYMF GntR family transcriptional regulator YP_001321528.1 3851509 R 293826 CDS YP_001321529.1 150391480 5313832 complement(3852387..3854066) 1 NC_009633.1 TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: dvl:Dvul_0784 L-lactate transport; L-lactate transport 3854066 5313832 Amet_3751 Alkaliphilus metalliredigens QYMF L-lactate transport YP_001321529.1 3852387 R 293826 CDS YP_001321530.1 150391481 5313833 complement(3854655..3855287) 1 NC_009633.1 PFAM: protein of unknown function DUF1271; SMART: zinc finger, CDGSH-type domain protein; KEGG: mbu:Mbur_2272 protein of unknown function DUF1271; hypothetical protein 3855287 5313833 Amet_3752 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321530.1 3854655 R 293826 CDS YP_001321531.1 150391482 5313834 3855492..3857906 1 NC_009633.1 TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein, family 3; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: dsy:DSY1176 hypothetical protein; diguanylate cyclase and metal dependent phosphohydrolase 3857906 5313834 Amet_3753 Alkaliphilus metalliredigens QYMF diguanylate cyclase and metal dependent phosphohydrolase YP_001321531.1 3855492 D 293826 CDS YP_001321532.1 150391483 5313835 complement(3858052..3860052) 1 NC_009633.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC00924 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3860052 5313835 Amet_3754 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001321532.1 3858052 R 293826 CDS YP_001321533.1 150391484 5313836 complement(3860255..3861709) 1 NC_009633.1 PFAM: helicase domain protein; DbpA, RNA-binding domain protein; type III restriction protein, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bat:BAS5307 ATP-dependent RNA helicase, DEAD/DEAH box family; DEAD/DEAH box helicase 3861709 5313836 Amet_3755 Alkaliphilus metalliredigens QYMF DEAD/DEAH box helicase YP_001321533.1 3860255 R 293826 CDS YP_001321534.1 150391485 5313837 complement(3861869..3863077) 1 NC_009633.1 phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway; methylthioribose kinase 3863077 mtnK 5313837 mtnK Alkaliphilus metalliredigens QYMF methylthioribose kinase YP_001321534.1 3861869 R 293826 CDS YP_001321535.1 150391486 5313838 complement(3863108..3864160) 1 NC_009633.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase 3864160 mtnA 5313838 mtnA Alkaliphilus metalliredigens QYMF methylthioribose-1-phosphate isomerase YP_001321535.1 3863108 R 293826 CDS YP_001321536.1 150391487 5313839 complement(3864193..3864849) 1 NC_009633.1 catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate; L-fuculose phosphate aldolase 3864849 5313839 Amet_3758 Alkaliphilus metalliredigens QYMF L-fuculose phosphate aldolase YP_001321536.1 3864193 R 293826 CDS YP_001321537.1 150391488 5313840 3865163..3866197 1 NC_009633.1 PFAM: chemotaxis sensory transducer; KEGG: cac:CAC0432 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3866197 5313840 Amet_3759 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001321537.1 3865163 D 293826 CDS YP_001321538.1 150391489 5313841 3866251..3866718 1 NC_009633.1 PFAM: CheW domain protein; KEGG: chy:CHY_0966 chemotaxis protein CheW; putative CheW protein 3866718 5313841 Amet_3760 Alkaliphilus metalliredigens QYMF putative CheW protein YP_001321538.1 3866251 D 293826 CDS YP_001321539.1 150391490 5313842 complement(3866934..3868193) 1 NC_009633.1 KEGG: lsl:LSL_0479 protein EcsB; hypothetical protein 3868193 5313842 Amet_3761 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321539.1 3866934 R 293826 CDS YP_001321540.1 150391491 5313843 complement(3868190..3868921) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB1155 ABC transporter ATP-binding protein; ABC transporter-like protein 3868921 5313843 Amet_3762 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321540.1 3868190 R 293826 CDS YP_001321541.1 150391492 5313844 complement(3869224..3869988) 1 NC_009633.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dsy:DSY2631 carbon monoxide dehydrogenase maturation factor; cobyrinic acid a,c-diamide synthase 3869988 5313844 Amet_3763 Alkaliphilus metalliredigens QYMF cobyrinic acid a,c-diamide synthase YP_001321541.1 3869224 R 293826 CDS YP_001321542.1 150391493 5313845 complement(3870178..3872100) 1 NC_009633.1 TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; KEGG: chy:CHY_1824 carbon-monoxide dehydrogenase, catalytic subunit; carbon-monoxide dehydrogenase, catalytic subunit 3872100 5313845 Amet_3764 Alkaliphilus metalliredigens QYMF carbon-monoxide dehydrogenase, catalytic subunit YP_001321542.1 3870178 R 293826 CDS YP_001321543.1 150391494 5313846 complement(3872151..3872624) 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: chy:CHY_1825 iron-sulfur cluster-binding protein CooF; 4Fe-4S ferredoxin 3872624 5313846 Amet_3765 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001321543.1 3872151 R 293826 CDS YP_001321544.1 150391495 5313847 complement(3872833..3874731) 1 NC_009633.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; 4-vinyl reductase, 4VR; SMART: AAA ATPase; KEGG: tte:TTE1710 NtrC family transcriptional regulator, ATPase domain; sigma-54 dependent trancsriptional regulator 3874731 5313847 Amet_3766 Alkaliphilus metalliredigens QYMF sigma-54 dependent trancsriptional regulator YP_001321544.1 3872833 R 293826 CDS YP_001321545.1 150391496 5313848 complement(3874875..3876653) 1 NC_009633.1 TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; Oligopeptidase F; KEGG: bha:BH2856 peptidase; oligoendopeptidase F 3876653 5313848 Amet_3767 Alkaliphilus metalliredigens QYMF oligoendopeptidase F YP_001321545.1 3874875 R 293826 CDS YP_001321546.1 150391497 5313849 complement(3876756..3876983) 1 NC_009633.1 PFAM: protein of unknown function DUF1653; KEGG: pat:Patl_0461 protein of unknown function DUF1653; hypothetical protein 3876983 5313849 Amet_3768 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321546.1 3876756 R 293826 CDS YP_001321547.1 150391498 5313850 complement(3877059..3879032) 1 NC_009633.1 SMART: helicase c2; KEGG: sth:STH2740 ATP-dependent helicase; helicase c2 3879032 5313850 Amet_3769 Alkaliphilus metalliredigens QYMF helicase c2 YP_001321547.1 3877059 R 293826 CDS YP_001321548.1 150391499 5313851 complement(3879322..3880542) 1 NC_009633.1 PFAM: major facilitator superfamily MFS_1; KEGG: btk:BT9727_2273 permease; possible macrolide-efflux protein; major facilitator superfamily transporter 3880542 5313851 Amet_3770 Alkaliphilus metalliredigens QYMF major facilitator superfamily transporter YP_001321548.1 3879322 R 293826 CDS YP_001321549.1 150391500 5313852 complement(3880544..3881332) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpr:CPR_0797 ferrichrome transport ATP-binding protein FhuC; ABC transporter-like protein 3881332 5313852 Amet_3771 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321549.1 3880544 R 293826 CDS YP_001321550.1 150391501 5313853 complement(3881333..3882340) 1 NC_009633.1 PFAM: transport system permease protein; KEGG: cpe:CPE0812 probable ferrichrome ABC transporter; transport system permease 3882340 5313853 Amet_3772 Alkaliphilus metalliredigens QYMF transport system permease YP_001321550.1 3881333 R 293826 CDS YP_001321551.1 150391502 5313854 complement(3882342..3883328) 1 NC_009633.1 PFAM: transport system permease protein; KEGG: cpr:CPR_0795 iron compound ABC transporter, permease protein; transport system permease 3883328 5313854 Amet_3773 Alkaliphilus metalliredigens QYMF transport system permease YP_001321551.1 3882342 R 293826 CDS YP_001321552.1 150391503 5313855 complement(3883315..3884274) 1 NC_009633.1 PFAM: periplasmic binding protein; KEGG: cpf:CPF_0807 iron compound ABC transporter, iron compound-binding protein; periplasmic binding protein 3884274 5313855 Amet_3774 Alkaliphilus metalliredigens QYMF periplasmic binding protein YP_001321552.1 3883315 R 293826 CDS YP_001321553.1 150391504 5313856 3884512..3885513 1 NC_009633.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: gfo:orf1663 AraC family transcriptional regulator protein; helix-turn-helix domain-containing protein 3885513 5313856 Amet_3775 Alkaliphilus metalliredigens QYMF helix-turn-helix domain-containing protein YP_001321553.1 3884512 D 293826 CDS YP_001321554.1 150391505 5313857 3885877..3886926 1 NC_009633.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: aba:Acid345_3638 methyltransferase; S-adenosyl-methyltransferase MraW 3886926 5313857 Amet_3776 Alkaliphilus metalliredigens QYMF S-adenosyl-methyltransferase MraW YP_001321554.1 3885877 D 293826 CDS YP_001321555.1 150391506 5313858 complement(3887219..3888925) 1 NC_009633.1 PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC3397 membrane associated methyl-accepting chemotaxis protein (with HamP domain); methyl-accepting chemotaxis sensory transducer 3888925 5313858 Amet_3777 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001321555.1 3887219 R 293826 CDS YP_001321556.1 150391507 5313859 3889225..3889686 1 NC_009633.1 Contains selenocysteine; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sat:SYN_03642 thioredoxin peroxidase; alkyl hydroperoxide reductase 3889686 5313859 Amet_3778 Alkaliphilus metalliredigens QYMF alkyl hydroperoxide reductase YP_001321556.1 3889225 D 293826 CDS YP_001321557.1 150391508 5313860 complement(3889969..3892356) 1 NC_009633.1 PFAM: helicase domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: tfu:Tfu_0761 preprotein translocase SecA subunit; SecA DEAD domain-containing protein 3892356 5313860 Amet_3779 Alkaliphilus metalliredigens QYMF SecA DEAD domain-containing protein YP_001321557.1 3889969 R 293826 CDS YP_001321558.1 150391509 5313861 complement(3892885..3893037) 1 NC_009633.1 hypothetical protein 3893037 5313861 Amet_3780 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321558.1 3892885 R 293826 CDS YP_001321559.1 150391510 5313862 complement(3893066..3894271) 1 NC_009633.1 PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: cno:NT01CX_0803 major facilitator superfamily protein; major facilitator superfamily transporter 3894271 5313862 Amet_3781 Alkaliphilus metalliredigens QYMF major facilitator superfamily transporter YP_001321559.1 3893066 R 293826 CDS YP_001321560.1 150391511 5313863 complement(3894332..3894673) 1 NC_009633.1 PFAM: Cupin 2, conserved barrel domain protein; KEGG: cac:CAC3376 possible pectin degradation protein (sugar phosphate isomerase family); cupin 3894673 5313863 Amet_3782 Alkaliphilus metalliredigens QYMF cupin YP_001321560.1 3894332 R 293826 CDS YP_001321561.1 150391512 5313864 complement(3894720..3896324) 1 NC_009633.1 PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: mta:Moth_0429 mannitol dehydrogenase; mannitol dehydrogenase domain-containing protein 3896324 5313864 Amet_3783 Alkaliphilus metalliredigens QYMF mannitol dehydrogenase domain-containing protein YP_001321561.1 3894720 R 293826 CDS YP_001321562.1 150391513 5313865 complement(3896464..3897534) 1 NC_009633.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 3897534 5313865 Amet_3784 Alkaliphilus metalliredigens QYMF mannonate dehydratase YP_001321562.1 3896464 R 293826 CDS YP_001321563.1 150391514 5313866 complement(3897750..3898220) 1 NC_009633.1 hypothetical protein 3898220 5313866 Amet_3785 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321563.1 3897750 R 293826 CDS YP_001321564.1 150391515 5313867 complement(3898229..3899521) 1 NC_009633.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: msm:MSMEG_6845 trap dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter subunit DctM 3899521 5313867 Amet_3786 Alkaliphilus metalliredigens QYMF TRAP dicarboxylate transporter subunit DctM YP_001321564.1 3898229 R 293826 CDS YP_001321565.1 150391516 5313868 complement(3899511..3900044) 1 NC_009633.1 PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: vch:VC1778 hypothetical protein; tripartite ATP-independent periplasmic transporter DctQ 3900044 5313868 Amet_3787 Alkaliphilus metalliredigens QYMF tripartite ATP-independent periplasmic transporter DctQ YP_001321565.1 3899511 R 293826 CDS YP_001321566.1 150391517 5313869 complement(3900202..3901269) 1 NC_009633.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: msm:MSMEG_6844 TRAP-T family protein transporter, dCTP; TRAP dicarboxylate transporter subunit DctP 3901269 5313869 Amet_3788 Alkaliphilus metalliredigens QYMF TRAP dicarboxylate transporter subunit DctP YP_001321566.1 3900202 R 293826 CDS YP_001321567.1 150391518 5313870 complement(3901670..3902359) 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bld:BLi01354 hypothetical protein; GntR family transcriptional regulator 3902359 5313870 Amet_3789 Alkaliphilus metalliredigens QYMF GntR family transcriptional regulator YP_001321567.1 3901670 R 293826 CDS YP_001321568.1 150391519 5313871 complement(3902656..3903372) 1 NC_009633.1 KEGG: nha:Nham_2838 zinc finger, SWIM-type; zinc finger, SWIM-type 3903372 5313871 Amet_3790 Alkaliphilus metalliredigens QYMF zinc finger, SWIM-type YP_001321568.1 3902656 R 293826 CDS YP_001321569.1 150391520 5313872 complement(3903372..3906023) 1 NC_009633.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: nha:Nham_2839 SNF2-related; non-specific serine/threonine protein kinase 3906023 5313872 Amet_3791 Alkaliphilus metalliredigens QYMF non-specific serine/threonine protein kinase YP_001321569.1 3903372 R 293826 CDS YP_001321570.1 150391521 5313873 complement(3906266..3906736) 1 NC_009633.1 hypothetical protein 3906736 5313873 Amet_3792 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321570.1 3906266 R 293826 CDS YP_001321571.1 150391522 5313874 complement(3906738..3907499) 1 NC_009633.1 PFAM: protein of unknown function DUF1568; KEGG: swo:Swol_2198 transposase; hypothetical protein 3907499 5313874 Amet_3793 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321571.1 3906738 R 293826 CDS YP_001321572.1 150391523 5313875 complement(3907813..3909300) 1 NC_009633.1 TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: mta:Moth_2025 xylulokinase; xylulokinase 3909300 5313875 Amet_3794 Alkaliphilus metalliredigens QYMF xylulokinase YP_001321572.1 3907813 R 293826 CDS YP_001321573.1 150391524 5313876 complement(3909334..3910512) 1 NC_009633.1 PFAM: ROK family protein; KEGG: cac:CAC3673 XylR transcriptional regulator; ROK family protein 3910512 5313876 Amet_3795 Alkaliphilus metalliredigens QYMF ROK family protein YP_001321573.1 3909334 R 293826 CDS YP_001321574.1 150391525 5313877 complement(3910668..3911981) 1 NC_009633.1 TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tma:TM1667 xylose isomerase; xylose isomerase 3911981 5313877 Amet_3796 Alkaliphilus metalliredigens QYMF xylose isomerase YP_001321574.1 3910668 R 293826 CDS YP_001321575.1 150391526 5313878 complement(3911956..3913182) 1 NC_009633.1 PFAM: inner-membrane translocator; KEGG: gka:GK1908 L-arabinose ABC transporter (permease); monosaccharide-transporting ATPase 3913182 5313878 Amet_3797 Alkaliphilus metalliredigens QYMF monosaccharide-transporting ATPase YP_001321575.1 3911956 R 293826 CDS YP_001321576.1 150391527 5313879 complement(3913198..3914760) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK1909 ABC transporter (ATP-binding protein); ABC transporter-like protein 3914760 5313879 Amet_3798 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321576.1 3913198 R 293826 CDS YP_001321577.1 150391528 5313880 complement(3914863..3915960) 1 NC_009633.1 KEGG: rle:RL3617 putative solute-binding component of ABC transporter; putative ABC transporter solute-binding protein 3915960 5313880 Amet_3799 Alkaliphilus metalliredigens QYMF putative ABC transporter solute-binding protein YP_001321577.1 3914863 R 293826 CDS YP_001321578.1 150391529 5313881 complement(3916247..3917296) 1 NC_009633.1 PFAM: Aldose 1-epimerase; KEGG: rba:RB6537 aldose 1-epimerase; aldose 1-epimerase 3917296 5313881 Amet_3800 Alkaliphilus metalliredigens QYMF aldose 1-epimerase YP_001321578.1 3916247 R 293826 CDS YP_001321579.1 150391530 5313882 complement(3917443..3918015) 1 NC_009633.1 KEGG: swo:Swol_0136 transposase and inactivated derivatives-like protein; transposase and inactivated derivatives-like protein 3918015 5313882 Amet_3801 Alkaliphilus metalliredigens QYMF transposase and inactivated derivatives-like protein YP_001321579.1 3917443 R 293826 CDS YP_001321580.1 150391531 5313884 complement(3918356..3921295) 1 NC_009633.1 PFAM: protein of unknown function DUF291; Ig family protein; Ig domain protein; copper amine oxidase domain protein; KEGG: dsy:DSY0535 hypothetical protein; copper amine oxidase domain-containing protein 3921295 5313884 Amet_3803 Alkaliphilus metalliredigens QYMF copper amine oxidase domain-containing protein YP_001321580.1 3918356 R 293826 CDS YP_001321581.1 150391532 5313885 complement(3921711..3922817) 1 NC_009633.1 PFAM: response regulator receiver; KEGG: dsy:DSY0459 hypothetical protein; response regulator receiver/SARP domain-containing protein 3922817 5313885 Amet_3804 Alkaliphilus metalliredigens QYMF response regulator receiver/SARP domain-containing protein YP_001321581.1 3921711 R 293826 CDS YP_001321582.1 150391533 5313886 complement(3922853..3924571) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase internal region; KEGG: tte:TTE0871 Regulator of cell autolysis; signal transduction histidine kinase LytS 3924571 5313886 Amet_3805 Alkaliphilus metalliredigens QYMF signal transduction histidine kinase LytS YP_001321582.1 3922853 R 293826 CDS YP_001321583.1 150391534 5313887 complement(3924800..3926173) 1 NC_009633.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dsy:DSY3766 hypothetical protein; MATE efflux family protein 3926173 5313887 Amet_3806 Alkaliphilus metalliredigens QYMF MATE efflux family protein YP_001321583.1 3924800 R 293826 CDS YP_001321584.1 150391535 5313888 complement(3926240..3927991) 1 NC_009633.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY3478 hypothetical protein; ABC transporter-like protein 3927991 5313888 Amet_3807 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321584.1 3926240 R 293826 CDS YP_001321585.1 150391536 5313889 complement(3927984..3929813) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY3479 hypothetical protein; ABC transporter-like protein 3929813 5313889 Amet_3808 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321585.1 3927984 R 293826 CDS YP_001321586.1 150391537 5313890 complement(3930066..3931061) 1 NC_009633.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ctc:CTC01411 transcriptional regulatory protein; helix-turn-helix domain-containing protein 3931061 5313890 Amet_3809 Alkaliphilus metalliredigens QYMF helix-turn-helix domain-containing protein YP_001321586.1 3930066 R 293826 CDS YP_001321587.1 150391538 5313891 complement(3931274..3931468) 1 NC_009633.1 hypothetical protein 3931468 5313891 Amet_3810 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321587.1 3931274 R 293826 CDS YP_001321588.1 150391539 5313892 complement(3931672..3932064) 1 NC_009633.1 KEGG: dsy:DSY4223 hypothetical protein; hypothetical protein 3932064 5313892 Amet_3811 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321588.1 3931672 R 293826 CDS YP_001321589.1 150391540 5313893 complement(3932061..3932543) 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: dsy:DSY1999 hypothetical protein; ECF subfamily RNA polymerase sigma-24 factor 3932543 5313893 Amet_3812 Alkaliphilus metalliredigens QYMF ECF subfamily RNA polymerase sigma-24 factor YP_001321589.1 3932061 R 293826 CDS YP_001321590.1 150391541 5313894 complement(3932886..3933128) 1 NC_009633.1 KEGG: cac:CAC3492 hypothetical protein; hypothetical protein 3933128 5313894 Amet_3813 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321590.1 3932886 R 293826 CDS YP_001321591.1 150391542 5313895 complement(3933133..3933879) 1 NC_009633.1 KEGG: bth:BT_1587 hypothetical protein; hypothetical protein 3933879 5313895 Amet_3814 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321591.1 3933133 R 293826 CDS YP_001321592.1 150391543 5313896 complement(3933941..3934207) 1 NC_009633.1 KEGG: bth:BT_4495 hypothetical protein; hypothetical protein 3934207 5313896 Amet_3815 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321592.1 3933941 R 293826 CDS YP_001321593.1 150391544 5313897 complement(3934393..3935514) 1 NC_009633.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bcz:pE33L466_0272 transposase; IS605 family transposase OrfB 3935514 5313897 Amet_3816 Alkaliphilus metalliredigens QYMF IS605 family transposase OrfB YP_001321593.1 3934393 R 293826 CDS YP_001321594.1 150391545 5313898 complement(3935511..3935996) 1 NC_009633.1 PFAM: transposase IS200-family protein; KEGG: ctc:CTC00621 transposase; transposase IS200-family protein 3935996 5313898 Amet_3817 Alkaliphilus metalliredigens QYMF transposase IS200-family protein YP_001321594.1 3935511 R 293826 CDS YP_001321595.1 150391546 5313899 complement(3936004..3936351) 1 NC_009633.1 PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: cac:CAC3494 transcription regulator, YOBV B.subtilis homolog; helix-turn-helix, type 11 domain-containing protein 3936351 5313899 Amet_3818 Alkaliphilus metalliredigens QYMF helix-turn-helix, type 11 domain-containing protein YP_001321595.1 3936004 R 293826 CDS YP_001321596.1 150391547 5313900 3936631..3938505 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase; transposase, IS4 family protein 3938505 5313900 Amet_3819 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001321596.1 3936631 D 293826 CDS YP_001321597.1 150391548 5313902 complement(3939125..3939868) 1 NC_009633.1 PFAM: protein of unknown function DUF1568; KEGG: swo:Swol_1055 transposase; hypothetical protein 3939868 5313902 Amet_3821 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321597.1 3939125 R 293826 CDS YP_001321598.1 150391549 5313903 complement(3940078..3940377) 1 NC_009633.1 PFAM: microcompartments protein; KEGG: ssa:SSA_0525 microcompartment protein, putative; microcompartments protein 3940377 5313903 Amet_3822 Alkaliphilus metalliredigens QYMF microcompartments protein YP_001321598.1 3940078 R 293826 CDS YP_001321599.1 150391550 5313904 complement(3940401..3941057) 1 NC_009633.1 PFAM: Propanediol utilization protein; KEGG: ctc:CTC01440 hypothetical protein; propanediol utilization protein 3941057 5313904 Amet_3823 Alkaliphilus metalliredigens QYMF propanediol utilization protein YP_001321599.1 3940401 R 293826 CDS YP_001321600.1 150391551 5313905 complement(3941058..3942584) 1 NC_009633.1 TIGRFAM: acetaldehyde dehydrogenase (acetylating); PFAM: aldehyde dehydrogenase; KEGG: ctc:CTC01441 acetaldehyde dehydrogenase (acetylating); acetaldehyde dehydrogenase 3942584 5313905 Amet_3824 Alkaliphilus metalliredigens QYMF acetaldehyde dehydrogenase YP_001321600.1 3941058 R 293826 CDS YP_001321601.1 150391552 5313906 complement(3942621..3943220) 1 NC_009633.1 PFAM: microcompartments protein; KEGG: ctc:CTC01442 carbon dioxide concentrating mechanism protein CcmK homolog; microcompartments protein 3943220 5313906 Amet_3825 Alkaliphilus metalliredigens QYMF microcompartments protein YP_001321601.1 3942621 R 293826 CDS YP_001321602.1 150391553 5313907 complement(3943237..3943917) 1 NC_009633.1 KEGG: dsy:DSY4995 hypothetical protein; hypothetical protein 3943917 5313907 Amet_3826 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321602.1 3943237 R 293826 CDS YP_001321603.1 150391554 5313908 complement(3943963..3944511) 1 NC_009633.1 PFAM: microcompartments protein; KEGG: dsy:DSY4996 hypothetical protein; microcompartments protein 3944511 5313908 Amet_3827 Alkaliphilus metalliredigens QYMF microcompartments protein YP_001321603.1 3943963 R 293826 CDS YP_001321604.1 150391555 5313909 complement(3944504..3945841) 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: dsy:DSY4997 hypothetical protein; respiratory-chain NADH dehydrogenase domain-containing protein 3945841 5313909 Amet_3828 Alkaliphilus metalliredigens QYMF respiratory-chain NADH dehydrogenase domain-containing protein YP_001321604.1 3944504 R 293826 CDS YP_001321605.1 150391556 5313910 complement(3945857..3946120) 1 NC_009633.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: dsy:DSY4998 hypothetical protein; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 3946120 5313910 Amet_3829 Alkaliphilus metalliredigens QYMF ethanolamine utilization protein EutN/carboxysome structural protein Ccml YP_001321605.1 3945857 R 293826 CDS YP_001321606.1 150391557 5313911 complement(3946098..3946418) 1 NC_009633.1 PFAM: microcompartments protein; KEGG: dsy:DSY4999 hypothetical protein; microcompartments protein 3946418 5313911 Amet_3830 Alkaliphilus metalliredigens QYMF microcompartments protein YP_001321606.1 3946098 R 293826 CDS YP_001321607.1 150391558 5313912 complement(3946432..3947277) 1 NC_009633.1 TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: ctc:CTC01444 ethanolamine utilization protein eutJ; ethanolamine utilization protein EutJ family protein 3947277 5313912 Amet_3831 Alkaliphilus metalliredigens QYMF ethanolamine utilization protein EutJ family protein YP_001321607.1 3946432 R 293826 CDS YP_001321608.1 150391559 5313913 complement(3947259..3947897) 1 NC_009633.1 KEGG: ctc:CTC01445 hypothetical protein; hypothetical protein 3947897 5313913 Amet_3832 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321608.1 3947259 R 293826 CDS YP_001321609.1 150391560 5313914 complement(3947908..3948357) 1 NC_009633.1 KEGG: dsy:DSY5002 hypothetical protein; hypothetical protein 3948357 5313914 Amet_3833 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321609.1 3947908 R 293826 CDS YP_001321610.1 150391561 5313915 complement(3948354..3948707) 1 NC_009633.1 PFAM: microcompartments protein; KEGG: ctc:CTC01447 ethanolamine utilization protein eutS; microcompartments protein 3948707 5313915 Amet_3834 Alkaliphilus metalliredigens QYMF microcompartments protein YP_001321610.1 3948354 R 293826 CDS YP_001321611.1 150391562 5313916 complement(3948749..3949696) 1 NC_009633.1 TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: ctc:CTC01448 benzylsuccinate synthase activating enzyme; glycyl-radical activating family protein 3949696 5313916 Amet_3835 Alkaliphilus metalliredigens QYMF glycyl-radical activating family protein YP_001321611.1 3948749 R 293826 CDS YP_001321612.1 150391563 5313917 complement(3949827..3952364) 1 NC_009633.1 PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: ctc:CTC01449 formate acetyltransferase 2; formate C-acetyltransferase 3952364 5313917 Amet_3836 Alkaliphilus metalliredigens QYMF formate C-acetyltransferase YP_001321612.1 3949827 R 293826 CDS YP_001321613.1 150391564 5313918 complement(3952399..3952701) 1 NC_009633.1 PFAM: microcompartments protein; KEGG: dde:Dde_3284 carbon dioxide concentrating mechanism protein (PduA related)-like; microcompartments protein 3952701 5313918 Amet_3837 Alkaliphilus metalliredigens QYMF microcompartments protein YP_001321613.1 3952399 R 293826 CDS YP_001321614.1 150391565 5313919 complement(3952726..3953025) 1 NC_009633.1 PFAM: microcompartments protein; KEGG: dde:Dde_3284 carbon dioxide concentrating mechanism protein (PduA related)-like; microcompartments protein 3953025 5313919 Amet_3838 Alkaliphilus metalliredigens QYMF microcompartments protein YP_001321614.1 3952726 R 293826 CDS YP_001321615.1 150391566 5313920 complement(3953059..3953325) 1 NC_009633.1 KEGG: dde:Dde_3289 hypothetical protein; hypothetical protein 3953325 5313920 Amet_3839 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321615.1 3953059 R 293826 CDS YP_001321616.1 150391567 5313921 complement(3953312..3954445) 1 NC_009633.1 KEGG: ctc:CTC01451 membrane spanning protein; membrane spanning protein 3954445 5313921 Amet_3840 Alkaliphilus metalliredigens QYMF membrane spanning protein YP_001321616.1 3953312 R 293826 CDS YP_001321617.1 150391568 5313922 complement(3954770..3955687) 1 NC_009633.1 PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: cpr:CPR_0594 choline/ethanolamine kinase family protein; choline/ethanolamine kinase 3955687 5313922 Amet_3841 Alkaliphilus metalliredigens QYMF choline/ethanolamine kinase YP_001321617.1 3954770 R 293826 CDS YP_001321618.1 150391569 5313923 3956057..3957211 1 NC_009633.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: cno:NT01CX_0486 alcetaldehyde dehydrogenase or NADPH-dependent butanol dehydrogenase; iron-containing alcohol dehydrogenase 3957211 5313923 Amet_3842 Alkaliphilus metalliredigens QYMF iron-containing alcohol dehydrogenase YP_001321618.1 3956057 D 293826 CDS YP_001321619.1 150391570 5313924 3957476..3958669 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase internal region; KEGG: cno:NT01CX_0495 sensor histidine kinase, putative; signal transduction histidine kinase LytS 3958669 5313924 Amet_3843 Alkaliphilus metalliredigens QYMF signal transduction histidine kinase LytS YP_001321619.1 3957476 D 293826 CDS YP_001321620.1 150391571 5313925 3958672..3959412 1 NC_009633.1 PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: cno:NT01CX_0496 two-component response regulator; response regulator receiver protein 3959412 5313925 Amet_3844 Alkaliphilus metalliredigens QYMF response regulator receiver protein YP_001321620.1 3958672 D 293826 CDS YP_001321621.1 150391572 5313926 complement(3959581..3959748) 1 NC_009633.1 hypothetical protein 3959748 5313926 Amet_3845 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321621.1 3959581 R 293826 CDS YP_001321622.1 150391573 5313927 complement(3959745..3960620) 1 NC_009633.1 PFAM: helix-turn-helix- domain containing protein, AraC type; transcription activator, effector binding; KEGG: bcz:BCZK2776 transcriptional regulator, AraC family; transcription activator, effector binding 3960620 5313927 Amet_3846 Alkaliphilus metalliredigens QYMF transcription activator, effector binding YP_001321622.1 3959745 R 293826 CDS YP_001321623.1 150391574 5313928 complement(3960617..3963145) 1 NC_009633.1 PFAM: ABC transporter related; KEGG: vch:VC0394 excinuclease ABC, subunit A; ABC transporter-like protein 3963145 5313928 Amet_3847 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321623.1 3960617 R 293826 CDS YP_001321624.1 150391575 5313931 complement(3964548..3965192) 1 NC_009633.1 KEGG: dsy:DSY0628 hypothetical protein; hypothetical protein 3965192 5313931 Amet_3850 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321624.1 3964548 R 293826 CDS YP_001321625.1 150391576 5313932 complement(3965272..3965901) 1 NC_009633.1 PFAM: regulatory protein, TetR; KEGG: dsy:DSY4740 hypothetical protein; TetR family transcriptional regulator 3965901 5313932 Amet_3851 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001321625.1 3965272 R 293826 CDS YP_001321626.1 150391577 5313933 complement(3966154..3967629) 1 NC_009633.1 PFAM: beta-lactamase domain protein; KEGG: cth:Cthe_2754 beta-lactamase-like protein; beta-lactamase domain-containing protein 3967629 5313933 Amet_3852 Alkaliphilus metalliredigens QYMF beta-lactamase domain-containing protein YP_001321626.1 3966154 R 293826 CDS YP_001321627.1 150391578 5313934 complement(3967682..3967891) 1 NC_009633.1 hypothetical protein 3967891 5313934 Amet_3853 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321627.1 3967682 R 293826 CDS YP_001321628.1 150391579 5313935 complement(3967895..3968638) 1 NC_009633.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein; IstB ATP binding domain-containing protein 3968638 5313935 Amet_3854 Alkaliphilus metalliredigens QYMF IstB ATP binding domain-containing protein YP_001321628.1 3967895 R 293826 CDS YP_001321629.1 150391580 5313936 complement(3968626..3970179) 1 NC_009633.1 PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22); integrase catalytic subunit 3970179 5313936 Amet_3855 Alkaliphilus metalliredigens QYMF integrase catalytic subunit YP_001321629.1 3968626 R 293826 CDS YP_001321630.1 150391581 5313937 complement(3970310..3970756) 1 NC_009633.1 PFAM: protein of unknown function UPF0016; KEGG: sat:SYN_01349 hypothetical membrane protein; hypothetical protein 3970756 5313937 Amet_3856 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321630.1 3970310 R 293826 CDS YP_001321631.1 150391582 5313940 complement(3973392..3975656) 1 NC_009633.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FMN-binding domain protein; KEGG: dsy:DSY3697 putative fumarate reductase flavoprotein subunit; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3975656 5313940 Amet_3859 Alkaliphilus metalliredigens QYMF fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_001321631.1 3973392 R 293826 CDS YP_001321632.1 150391583 5313941 complement(3975816..3976406) 1 NC_009633.1 PFAM: regulatory protein, TetR; KEGG: cno:NT01CX_0025 transcription regulator (TetR/AcrR family); TetR family transcriptional regulator 3976406 5313941 Amet_3860 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001321632.1 3975816 R 293826 CDS YP_001321633.1 150391584 5313942 complement(3976610..3976747) 1 NC_009633.1 hypothetical protein 3976747 5313942 Amet_3861 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321633.1 3976610 R 293826 CDS YP_001321634.1 150391585 5313943 complement(3977320..3977922) 1 NC_009633.1 PFAM: regulatory protein, TetR; KEGG: sco:SCO1094 TetR-family regulatory protein; TetR family transcriptional regulator 3977922 5313943 Amet_3862 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001321634.1 3977320 R 293826 CDS YP_001321635.1 150391586 5313944 3978215..3979672 1 NC_009633.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dsy:DSY3139 putative fumarate reductase flavoprotein subunit; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 3979672 5313944 Amet_3863 Alkaliphilus metalliredigens QYMF fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_001321635.1 3978215 D 293826 CDS YP_001321636.1 150391587 5313945 complement(3979949..3980209) 1 NC_009633.1 hypothetical protein 3980209 5313945 Amet_3864 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321636.1 3979949 R 293826 CDS YP_001321637.1 150391588 5313946 complement(3980374..3981270) 1 NC_009633.1 KEGG: pfa:PFF0660w hypothetical protein; hypothetical protein 3981270 5313946 Amet_3865 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321637.1 3980374 R 293826 CDS YP_001321638.1 150391589 5313947 complement(3981709..3981921) 1 NC_009633.1 hypothetical protein 3981921 5313947 Amet_3866 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321638.1 3981709 R 293826 CDS YP_001321639.1 150391590 5313948 complement(3981948..3982457) 1 NC_009633.1 PFAM: ABC transporter related; KEGG: ctc:CTC00915 transporter; ABC transporter-like protein 3982457 5313948 Amet_3867 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321639.1 3981948 R 293826 CDS YP_001321640.1 150391591 5313949 complement(3982454..3983695) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: cno:NT01CX_1433 subtilin biosynthesis sensor protein SpaK; integral membrane sensor signal transduction histidine kinase 3983695 5313949 Amet_3868 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001321640.1 3982454 R 293826 CDS YP_001321641.1 150391592 5313956 3987281..3988210 1 NC_009633.1 PFAM: regulatory protein, LysR; KEGG: lme:LEUM_1238 fhu operon transcription regulator; LysR family transcriptional regulator 3988210 5313956 Amet_3875 Alkaliphilus metalliredigens QYMF LysR family transcriptional regulator YP_001321641.1 3987281 D 293826 CDS YP_001321642.1 150391593 5313957 3988345..3989715 1 NC_009633.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: fnu:FN0667 Na+ driven multidrug efflux pump; MATE efflux family protein 3989715 5313957 Amet_3876 Alkaliphilus metalliredigens QYMF MATE efflux family protein YP_001321642.1 3988345 D 293826 CDS YP_001321643.1 150391594 5313962 complement(3991472..3993469) 1 NC_009633.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: mta:Moth_1487 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 3993469 5313962 Amet_3881 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001321643.1 3991472 R 293826 CDS YP_001321644.1 150391595 5313964 complement(3994026..3994325) 1 NC_009633.1 hypothetical protein 3994325 5313964 Amet_3883 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321644.1 3994026 R 293826 CDS YP_001321645.1 150391596 5313965 complement(3994632..3994757) 1 NC_009633.1 KEGG: swo:Swol_0148 transposase and inactivated derivatives-like protein; hypothetical protein 3994757 5313965 Amet_3884 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321645.1 3994632 R 293826 CDS YP_001321646.1 150391597 5313966 complement(3994853..3995770) 1 NC_009633.1 KEGG: fnu:FN0872 hypothetical protein; hypothetical protein 3995770 5313966 Amet_3885 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321646.1 3994853 R 293826 CDS YP_001321647.1 150391598 5313968 complement(3996321..3997586) 1 NC_009633.1 PFAM: major facilitator superfamily MFS_1; KEGG: lin:lin2274 hypothetical protein; major facilitator superfamily transporter 3997586 5313968 Amet_3887 Alkaliphilus metalliredigens QYMF major facilitator superfamily transporter YP_001321647.1 3996321 R 293826 CDS YP_001321648.1 150391599 5313970 complement(3998833..3999750) 1 NC_009633.1 PFAM: amidohydrolase; KEGG: mta:Moth_0462 amidohydrolase; amidohydrolase 3999750 5313970 Amet_3889 Alkaliphilus metalliredigens QYMF amidohydrolase YP_001321648.1 3998833 R 293826 CDS YP_001321649.1 150391600 5313972 complement(4000467..4001750) 1 NC_009633.1 KEGG: dsy:DSY3881 hypothetical protein; hypothetical protein 4001750 5313972 Amet_3891 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321649.1 4000467 R 293826 CDS YP_001321650.1 150391601 5313973 complement(4001762..4002568) 1 NC_009633.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: oih:OB3327 hypothetical conserved protein; YaeC family lipoprotein 4002568 5313973 Amet_3892 Alkaliphilus metalliredigens QYMF YaeC family lipoprotein YP_001321650.1 4001762 R 293826 CDS YP_001321651.1 150391602 5313974 complement(4002620..4003297) 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pin:Ping_3537 ABC transporter substrate binding inner membrane protein; binding-protein-dependent transport system inner membrane protein 4003297 5313974 Amet_3893 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001321651.1 4002620 R 293826 CDS YP_001321652.1 150391603 5313975 complement(4003260..4004324) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_2430 hypothetical protein; ABC transporter-like protein 4004324 5313975 Amet_3894 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321652.1 4003260 R 293826 CDS YP_001321653.1 150391604 5313976 complement(4004566..4005093) 1 NC_009633.1 KEGG: swo:Swol_2198 transposase; transposase 4005093 5313976 Amet_3895 Alkaliphilus metalliredigens QYMF transposase YP_001321653.1 4004566 R 293826 CDS YP_001321654.1 150391605 5313978 join(4005412..4005846,4005846..4006295) 1 NC_009633.1 KEGG: sat:SYN_03180 transposase and inactivated derivatives; hypothetical protein 4006295 5313978 Amet_3897 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321654.1 4005412 D 293826 CDS YP_001321655.1 150391606 5313980 complement(4006949..4007803) 1 NC_009633.1 hypothetical protein 4007803 5313980 Amet_3899 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321655.1 4006949 R 293826 CDS YP_001321656.1 150391607 5313981 complement(4007911..4008726) 1 NC_009633.1 KEGG: llm:llmg_2206 hypothetical protein predicted by Glimmer/Critica; hypothetical protein 4008726 5313981 Amet_3900 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321656.1 4007911 R 293826 CDS YP_001321657.1 150391608 5313982 complement(4009037..4010407) 1 NC_009633.1 PFAM: peptidase M56, BlaR1; KEGG: dsy:DSY1015 hypothetical protein; peptidase M56, BlaR1 4010407 5313982 Amet_3901 Alkaliphilus metalliredigens QYMF peptidase M56, BlaR1 YP_001321657.1 4009037 R 293826 CDS YP_001321658.1 150391609 5313983 complement(4010412..4010777) 1 NC_009633.1 PFAM: Penicillinase repressor; KEGG: cth:Cthe_3145 transcriptional repressor, CopY family; CopY family transcriptional regulator 4010777 5313983 Amet_3902 Alkaliphilus metalliredigens QYMF CopY family transcriptional regulator YP_001321658.1 4010412 R 293826 CDS YP_001321659.1 150391610 5313985 complement(4011882..4012700) 1 NC_009633.1 PFAM: ABC-2 type transporter; KEGG: gka:GK0909 ABC transporter (permease); ABC transporter 4012700 5313985 Amet_3904 Alkaliphilus metalliredigens QYMF ABC transporter YP_001321659.1 4011882 R 293826 CDS YP_001321660.1 150391611 5313986 complement(4012697..4013668) 1 NC_009633.1 TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK0910 ABC transporter (ATP-binding protein); daunorubicin resistance ABC transporter ATPase subunit 4013668 5313986 Amet_3905 Alkaliphilus metalliredigens QYMF daunorubicin resistance ABC transporter ATPase subunit YP_001321660.1 4012697 R 293826 CDS YP_001321661.1 150391612 5313987 complement(4013890..4014066) 1 NC_009633.1 hypothetical protein 4014066 5313987 Amet_3906 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321661.1 4013890 R 293826 CDS YP_001321662.1 150391613 5313988 complement(4014108..4014380) 1 NC_009633.1 hypothetical protein 4014380 5313988 Amet_3907 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321662.1 4014108 R 293826 CDS YP_001321663.1 150391614 5313989 complement(4014516..4014794) 1 NC_009633.1 KEGG: cth:Cthe_0819 ABC transporter related protein; spermidine/putrescine ABC transporter ATPase-like protein 4014794 5313989 Amet_3908 Alkaliphilus metalliredigens QYMF spermidine/putrescine ABC transporter ATPase-like protein YP_001321663.1 4014516 R 293826 CDS YP_001321664.1 150391615 5313990 complement(4015081..4015569) 1 NC_009633.1 PFAM: regulatory protein, MarR; KEGG: llm:llmg_1017 transcriptional regulator, MarR family; MarR family transcriptional regulator 4015569 5313990 Amet_3909 Alkaliphilus metalliredigens QYMF MarR family transcriptional regulator YP_001321664.1 4015081 R 293826 CDS YP_001321665.1 150391616 5313991 complement(4015833..4016012) 1 NC_009633.1 hypothetical protein 4016012 5313991 Amet_3910 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321665.1 4015833 R 293826 CDS YP_001321666.1 150391617 5313992 4016066..4016458 1 NC_009633.1 PFAM: IstB domain protein ATP-binding protein; KEGG: llm:llmg_2109 putative transposase helper protein for IS712H; IstB ATP binding domain-containing protein 4016458 5313992 Amet_3911 Alkaliphilus metalliredigens QYMF IstB ATP binding domain-containing protein YP_001321666.1 4016066 D 293826 CDS YP_001321667.1 150391618 5313993 complement(4016692..4017261) 1 NC_009633.1 PFAM: transcriptional regulator PadR family protein; KEGG: cac:CAC0530 hypothetical protein; PadR-like family transcriptional regulator 4017261 5313993 Amet_3912 Alkaliphilus metalliredigens QYMF PadR-like family transcriptional regulator YP_001321667.1 4016692 R 293826 CDS YP_001321668.1 150391619 5313994 complement(4017322..4018170) 1 NC_009633.1 PFAM: protein of unknown function DUF303, acetylesterase putative; KEGG: cac:CAC0529 acetylxylan esterase related enzyme; hypothetical protein 4018170 5313994 Amet_3913 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321668.1 4017322 R 293826 CDS YP_001321669.1 150391620 5313995 complement(join(4019041..4019517,4019517..4020356)) 1 NC_009633.1 KEGG: pol:Bpro_5089 transposase, IS4; hypothetical protein 4020356 5313995 Amet_3914 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321669.1 4019041 R 293826 CDS YP_001321670.1 150391621 5313997 complement(4020745..4021470) 1 NC_009633.1 PFAM: transcription activator, effector binding; KEGG: mlo:mll8212 transcriptional regulator; transcription activator, effector binding 4021470 5313997 Amet_3916 Alkaliphilus metalliredigens QYMF transcription activator, effector binding YP_001321670.1 4020745 R 293826 CDS YP_001321671.1 150391622 5313998 4021884..4022477 1 NC_009633.1 PFAM: transcriptional regulator PadR family protein; KEGG: dsy:DSY0556 hypothetical protein; PadR-like family transcriptional regulator 4022477 5313998 Amet_3917 Alkaliphilus metalliredigens QYMF PadR-like family transcriptional regulator YP_001321671.1 4021884 D 293826 CDS YP_001321672.1 150391623 5313999 4022467..4022772 1 NC_009633.1 KEGG: sus:Acid_3161 palmitoyl-CoA hydrolase; palmitoyl-CoA hydrolase 4022772 5313999 Amet_3918 Alkaliphilus metalliredigens QYMF palmitoyl-CoA hydrolase YP_001321672.1 4022467 D 293826 CDS YP_001321673.1 150391624 5314000 4022907..4024271 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: wol:WD0563 transposase, IS4 family; transposase, IS4 family protein 4024271 5314000 Amet_3919 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001321673.1 4022907 D 293826 CDS YP_001321674.1 150391625 5314001 4024287..4025213 1 NC_009633.1 PFAM: BAAT/Acyl-CoA thioester hydrolase-like; KEGG: cac:CAC3407 acyl-CoA thioesterase 1; BAAT/Acyl-CoA thioester hydrolase-like protein 4025213 5314001 Amet_3920 Alkaliphilus metalliredigens QYMF BAAT/Acyl-CoA thioester hydrolase-like protein YP_001321674.1 4024287 D 293826 CDS YP_001321675.1 150391626 5314002 complement(4025605..4026426) 1 NC_009633.1 hypothetical protein 4026426 5314002 Amet_3921 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321675.1 4025605 R 293826 CDS YP_001321676.1 150391627 5314003 complement(4026620..4027315) 1 NC_009633.1 KEGG: dsy:DSY0910 hypothetical protein; hypothetical protein 4027315 5314003 Amet_3922 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321676.1 4026620 R 293826 CDS YP_001321677.1 150391628 5314004 complement(4027363..4028115) 1 NC_009633.1 SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: dsy:DSY0909 hypothetical protein; helix-turn-helix domain-containing protein 4028115 5314004 Amet_3923 Alkaliphilus metalliredigens QYMF helix-turn-helix domain-containing protein YP_001321677.1 4027363 R 293826 CDS YP_001321678.1 150391629 5314007 complement(4030955..4031593) 1 NC_009633.1 KEGG: dsy:DSY1145 hypothetical protein; hypothetical protein 4031593 5314007 Amet_3926 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321678.1 4030955 R 293826 CDS YP_001321679.1 150391630 5314008 complement(4031650..4031898) 1 NC_009633.1 hypothetical protein 4031898 5314008 Amet_3927 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321679.1 4031650 R 293826 CDS YP_001321680.1 150391631 5314009 complement(4032309..4033019) 1 NC_009633.1 hypothetical protein 4033019 5314009 Amet_3928 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321680.1 4032309 R 293826 CDS YP_001321681.1 150391632 5314010 complement(4033131..4033451) 1 NC_009633.1 hypothetical protein 4033451 5314010 Amet_3929 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321681.1 4033131 R 293826 CDS YP_001321682.1 150391633 5314011 complement(4033805..4034005) 1 NC_009633.1 hypothetical protein 4034005 5314011 Amet_3930 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321682.1 4033805 R 293826 CDS YP_001321683.1 150391634 5314013 4034738..4035544 1 NC_009633.1 PFAM: zinc/iron permease; KEGG: oih:OB2427 zinc transporter, ZIP family; zinc/iron permease 4035544 5314013 Amet_3932 Alkaliphilus metalliredigens QYMF zinc/iron permease YP_001321683.1 4034738 D 293826 CDS YP_001321684.1 150391635 5314015 4035838..4037088 1 NC_009633.1 PFAM: Haem peroxidase; KEGG: bha:BH0906 catalase; catalase 4037088 5314015 Amet_3934 Alkaliphilus metalliredigens QYMF catalase YP_001321684.1 4035838 D 293826 CDS YP_001321685.1 150391636 5314016 complement(4037255..4037959) 1 NC_009633.1 SMART: regulatory protein, MerR; KEGG: dsy:DSY3460 hypothetical protein; MerR family transcriptional regulator 4037959 5314016 Amet_3935 Alkaliphilus metalliredigens QYMF MerR family transcriptional regulator YP_001321685.1 4037255 R 293826 CDS YP_001321686.1 150391637 5314017 complement(4038096..4038872) 1 NC_009633.1 PFAM: ABC-2 type transporter; KEGG: sma:SAV6712 hypothetical protein; ABC transporter 4038872 5314017 Amet_3936 Alkaliphilus metalliredigens QYMF ABC transporter YP_001321686.1 4038096 R 293826 CDS YP_001321687.1 150391638 5314018 complement(4038908..4039879) 1 NC_009633.1 TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV6711 putative ABC transporter ATP-binding protein; daunorubicin resistance ABC transporter ATPase subunit 4039879 5314018 Amet_3937 Alkaliphilus metalliredigens QYMF daunorubicin resistance ABC transporter ATPase subunit YP_001321687.1 4038908 R 293826 CDS YP_001321688.1 150391639 5314019 complement(4040141..4040686) 1 NC_009633.1 KEGG: mxa:MXAN_1647 hypothetical protein; hypothetical protein 4040686 5314019 Amet_3938 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321688.1 4040141 R 293826 CDS YP_001321689.1 150391640 5314020 complement(4040818..4041558) 1 NC_009633.1 KEGG: btk:BT9727_1620 hypothetical protein; hypothetical protein 4041558 5314020 Amet_3939 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321689.1 4040818 R 293826 CDS YP_001321690.1 150391641 5314021 complement(4041796..4042653) 1 NC_009633.1 KEGG: dsy:DSY4213 hypothetical protein; hypothetical protein 4042653 5314021 Amet_3940 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321690.1 4041796 R 293826 CDS YP_001321691.1 150391642 5314022 4043025..4043390 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; KEGG: oih:OB0429 transcriptional regulator; regulatory protein GntR 4043390 5314022 Amet_3941 Alkaliphilus metalliredigens QYMF regulatory protein GntR YP_001321691.1 4043025 D 293826 CDS YP_001321692.1 150391643 5314023 4043393..4044271 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY4854 hypothetical protein; ABC transporter-like protein 4044271 5314023 Amet_3942 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321692.1 4043393 D 293826 CDS YP_001321693.1 150391644 5314024 4044273..4045010 1 NC_009633.1 KEGG: dsy:DSY4855 hypothetical protein; hypothetical protein 4045010 5314024 Amet_3943 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321693.1 4044273 D 293826 CDS YP_001321694.1 150391645 5314025 complement(4045400..4045744) 1 NC_009633.1 KEGG: chu:CHU_2284 membrane protein; membrane protein 4045744 5314025 Amet_3944 Alkaliphilus metalliredigens QYMF membrane protein YP_001321694.1 4045400 R 293826 CDS YP_001321695.1 150391646 5314026 complement(4045759..4046100) 1 NC_009633.1 hypothetical protein 4046100 5314026 Amet_3945 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321695.1 4045759 R 293826 CDS YP_001321696.1 150391647 5314027 complement(4046090..4046530) 1 NC_009633.1 KEGG: cpf:CPF_0333 hypothetical protein; hypothetical protein 4046530 5314027 Amet_3946 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321696.1 4046090 R 293826 CDS YP_001321697.1 150391648 5314028 complement(4046557..4046964) 1 NC_009633.1 KEGG: cpf:CPF_0332 hypothetical protein; hypothetical protein 4046964 5314028 Amet_3947 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321697.1 4046557 R 293826 CDS YP_001321698.1 150391649 5314029 complement(4047292..4048809) 1 NC_009633.1 KEGG: lwe:lwe0773 AAA - ATPase, putative; AAA ATPase 4048809 5314029 Amet_3948 Alkaliphilus metalliredigens QYMF AAA ATPase YP_001321698.1 4047292 R 293826 CDS YP_001321699.1 150391650 5314033 complement(4050608..4050922) 1 NC_009633.1 PFAM: conserved hypothetical protein 1655; KEGG: bld:BLi04148 YxeA; hypothetical protein 4050922 5314033 Amet_3952 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321699.1 4050608 R 293826 CDS YP_001321700.1 150391651 5314034 complement(4050938..4052860) 1 NC_009633.1 PFAM: protein of unknown function DUF214; KEGG: bld:BLi04210 similar to ABC transporter (permease); RBL02069; hypothetical protein 4052860 5314034 Amet_3953 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321700.1 4050938 R 293826 CDS YP_001321701.1 150391652 5314035 complement(4052857..4053636) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB0833 ABC transporter ATP-binding protein; ABC transporter-like protein 4053636 5314035 Amet_3954 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321701.1 4052857 R 293826 CDS YP_001321702.1 150391653 5314036 complement(4053800..4054837) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: bha:BH3912 two-component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 4054837 5314036 Amet_3955 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001321702.1 4053800 R 293826 CDS YP_001321703.1 150391654 5314037 complement(4054849..4055532) 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: oih:OB0831 two-component response regulator; two component transcriptional regulator 4055532 5314037 Amet_3956 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001321703.1 4054849 R 293826 CDS YP_001321704.1 150391655 5314038 complement(4055714..4055929) 1 NC_009633.1 PFAM: protein of unknown function DUF1232; KEGG: rme:Rmet_4662 protein of unknown function DUF1275; hypothetical protein 4055929 5314038 Amet_3957 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321704.1 4055714 R 293826 CDS YP_001321705.1 150391656 5314039 complement(4056402..4056968) 1 NC_009633.1 KEGG: bcl:ABC3146 hypothetical protein; hypothetical protein 4056968 5314039 Amet_3958 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321705.1 4056402 R 293826 CDS YP_001321706.1 150391657 5314040 complement(4056987..4057391) 1 NC_009633.1 KEGG: bcl:ABC1390 transcriptional regulator; hypothetical protein 4057391 5314040 Amet_3959 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321706.1 4056987 R 293826 CDS YP_001321707.1 150391658 5314041 complement(4057582..4058031) 1 NC_009633.1 hypothetical protein 4058031 5314041 Amet_3960 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321707.1 4057582 R 293826 CDS YP_001321708.1 150391659 5314043 complement(4058452..4060761) 1 NC_009633.1 PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: cch:Cag_1363 serine/threonine protein kinase; protein kinase 4060761 5314043 Amet_3962 Alkaliphilus metalliredigens QYMF protein kinase YP_001321708.1 4058452 R 293826 CDS YP_001321709.1 150391660 5314044 complement(4061174..4061383) 1 NC_009633.1 hypothetical protein 4061383 5314044 Amet_3963 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321709.1 4061174 R 293826 CDS YP_001321710.1 150391661 5314045 complement(4061367..4061864) 1 NC_009633.1 hypothetical protein 4061864 5314045 Amet_3964 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321710.1 4061367 R 293826 CDS YP_001321711.1 150391662 5314046 complement(4061901..4062509) 1 NC_009633.1 KEGG: stl:stu0103 hypothetical protein; hypothetical protein 4062509 5314046 Amet_3965 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321711.1 4061901 R 293826 CDS YP_001321712.1 150391663 5314047 complement(4062521..4064212) 1 NC_009633.1 PFAM: protein of unknown function DUF262; KEGG: cpr:CPR_0892 hypothetical protein; hypothetical protein 4064212 5314047 Amet_3966 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321712.1 4062521 R 293826 CDS YP_001321713.1 150391664 5314048 complement(4064215..4064736) 1 NC_009633.1 hypothetical protein 4064736 5314048 Amet_3967 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321713.1 4064215 R 293826 CDS YP_001321714.1 150391665 5314050 4065904..4066752 1 NC_009633.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: spi:MGAS10750_Spy1708 relaxase; relaxase/mobilization nuclease family protein 4066752 5314050 Amet_3969 Alkaliphilus metalliredigens QYMF relaxase/mobilization nuclease family protein YP_001321714.1 4065904 D 293826 CDS YP_001321715.1 150391666 5314051 4066822..4068375 1 NC_009633.1 PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22); integrase catalytic subunit 4068375 5314051 Amet_3970 Alkaliphilus metalliredigens QYMF integrase catalytic subunit YP_001321715.1 4066822 D 293826 CDS YP_001321716.1 150391667 5314052 4068363..4069106 1 NC_009633.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein; IstB ATP binding domain-containing protein 4069106 5314052 Amet_3971 Alkaliphilus metalliredigens QYMF IstB ATP binding domain-containing protein YP_001321716.1 4068363 D 293826 CDS YP_001321717.1 150391668 5314053 4069110..4069319 1 NC_009633.1 hypothetical protein 4069319 5314053 Amet_3972 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321717.1 4069110 D 293826 CDS YP_001321718.1 150391669 5314055 complement(4070022..4070492) 1 NC_009633.1 KEGG: spj:MGAS2096_Spy1123 hypothetical protein; hypothetical protein 4070492 5314055 Amet_3974 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321718.1 4070022 R 293826 CDS YP_001321719.1 150391670 5314056 complement(4070750..4073707) 1 NC_009633.1 PFAM: SMC domain protein; KEGG: fnu:FN0522 exonuclease SBCC; SMC domain-containing protein 4073707 5314056 Amet_3975 Alkaliphilus metalliredigens QYMF SMC domain-containing protein YP_001321719.1 4070750 R 293826 CDS YP_001321720.1 150391671 5314057 complement(4073704..4074288) 1 NC_009633.1 hypothetical protein 4074288 5314057 Amet_3976 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321720.1 4073704 R 293826 CDS YP_001321721.1 150391672 5314058 complement(4074285..4076171) 1 NC_009633.1 hypothetical protein 4076171 5314058 Amet_3977 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321721.1 4074285 R 293826 CDS YP_001321722.1 150391673 5314059 complement(4076457..4077236) 1 NC_009633.1 KEGG: spi:MGAS10750_Spy1695 hypothetical protein; hypothetical protein 4077236 5314059 Amet_3978 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321722.1 4076457 R 293826 CDS YP_001321723.1 150391674 5314060 complement(4077229..4077468) 1 NC_009633.1 hypothetical protein 4077468 5314060 Amet_3979 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321723.1 4077229 R 293826 CDS YP_001321724.1 150391675 5314061 complement(4077498..4078811) 1 NC_009633.1 PFAM: peptidase M23B; KEGG: efa:EF2318 peptidase, M23/M37 family; peptidase M23B 4078811 5314061 Amet_3980 Alkaliphilus metalliredigens QYMF peptidase M23B YP_001321724.1 4077498 R 293826 CDS YP_001321725.1 150391676 5314062 complement(4078893..4079423) 1 NC_009633.1 KEGG: mmu:677347 hypothetical protein LOC677347; hypothetical protein 4079423 5314062 Amet_3981 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321725.1 4078893 R 293826 CDS YP_001321726.1 150391677 5314064 complement(4081843..4082256) 1 NC_009633.1 KEGG: efa:EF2321 hypothetical protein; hypothetical protein 4082256 5314064 Amet_3983 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321726.1 4081843 R 293826 CDS YP_001321727.1 150391678 5314065 complement(4082269..4083138) 1 NC_009633.1 KEGG: efa:EF2324 hypothetical protein; hypothetical protein 4083138 5314065 Amet_3984 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321727.1 4082269 R 293826 CDS YP_001321728.1 150391679 5314067 complement(4083530..4084306) 1 NC_009633.1 hypothetical protein 4084306 5314067 Amet_3986 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321728.1 4083530 R 293826 CDS YP_001321729.1 150391680 5314068 complement(4084309..4085145) 1 NC_009633.1 hypothetical protein 4085145 5314068 Amet_3987 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321729.1 4084309 R 293826 CDS YP_001321730.1 150391681 5314069 complement(4085344..4086234) 1 NC_009633.1 KEGG: hch:HCH_05640 hypothetical protein; hypothetical protein 4086234 5314069 Amet_3988 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321730.1 4085344 R 293826 CDS YP_001321731.1 150391682 5314070 complement(4086486..4087127) 1 NC_009633.1 hypothetical protein 4087127 5314070 Amet_3989 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321731.1 4086486 R 293826 CDS YP_001321732.1 150391683 5314072 complement(4089066..4089563) 1 NC_009633.1 KEGG: efa:EF2329 hypothetical protein; hypothetical protein 4089563 5314072 Amet_3991 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321732.1 4089066 R 293826 CDS YP_001321733.1 150391684 5314073 complement(4089620..4090579) 1 NC_009633.1 PFAM: replication initiator A domain protein; KEGG: efa:EF2334 hypothetical protein; replication initiator A domain-containing protein 4090579 5314073 Amet_3992 Alkaliphilus metalliredigens QYMF replication initiator A domain-containing protein YP_001321733.1 4089620 R 293826 CDS YP_001321734.1 150391685 5314074 complement(4090586..4091545) 1 NC_009633.1 PFAM: ParB domain protein nuclease; KEGG: ctc:CTC01936 chromosome partitioning parB family protein; nuclease 4091545 5314074 Amet_3993 Alkaliphilus metalliredigens QYMF nuclease YP_001321734.1 4090586 R 293826 CDS YP_001321735.1 150391686 5314075 complement(4091532..4092320) 1 NC_009633.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: ctc:CTC01937 sporulation initiation inhibitor soj family protein; cobyrinic acid a,c-diamide synthase 4092320 5314075 Amet_3994 Alkaliphilus metalliredigens QYMF cobyrinic acid a,c-diamide synthase YP_001321735.1 4091532 R 293826 CDS YP_001321736.1 150391687 5314076 complement(4092392..4092502) 1 NC_009633.1 hypothetical protein 4092502 5314076 Amet_3995 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321736.1 4092392 R 293826 CDS YP_001321737.1 150391688 5314077 complement(4092843..4093907) 1 NC_009633.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: cth:Cthe_1111 bile acid:sodium symporter; arsenical-resistance protein 4093907 5314077 Amet_3996 Alkaliphilus metalliredigens QYMF arsenical-resistance protein YP_001321737.1 4092843 R 293826 CDS YP_001321738.1 150391689 5314078 complement(4094016..4095926) 1 NC_009633.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: gka:GK0585 cadmium-transporting ATPase; heavy metal translocating P-type ATPase 4095926 5314078 Amet_3997 Alkaliphilus metalliredigens QYMF heavy metal translocating P-type ATPase YP_001321738.1 4094016 R 293826 CDS YP_001321739.1 150391690 5314079 complement(4096055..4096213) 1 NC_009633.1 hypothetical protein 4096213 5314079 Amet_3998 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321739.1 4096055 R 293826 CDS YP_001321740.1 150391691 5314080 complement(4096290..4096628) 1 NC_009633.1 PFAM: regulatory protein, ArsR; KEGG: cth:Cthe_1112 transcriptional regulator, ArsR family; regulatory protein ArsR 4096628 5314080 Amet_3999 Alkaliphilus metalliredigens QYMF regulatory protein ArsR YP_001321740.1 4096290 R 293826 CDS YP_001321741.1 150391692 5314081 complement(4096843..4097322) 1 NC_009633.1 KEGG: tte:TTE2462 hypothetical protein; hypothetical protein 4097322 5314081 Amet_4000 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321741.1 4096843 R 293826 CDS YP_001321742.1 150391693 5314082 complement(4097350..4097490) 1 NC_009633.1 hypothetical protein 4097490 5314082 Amet_4001 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321742.1 4097350 R 293826 CDS YP_001321743.1 150391694 5314083 complement(4097536..4099122) 1 NC_009633.1 hypothetical protein 4099122 5314083 Amet_4002 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321743.1 4097536 R 293826 CDS YP_001321744.1 150391695 5314084 complement(4099151..4099828) 1 NC_009633.1 hypothetical protein 4099828 5314084 Amet_4003 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321744.1 4099151 R 293826 CDS YP_001321745.1 150391696 5314085 complement(4099844..4100068) 1 NC_009633.1 SMART: helix-turn-helix domain protein; KEGG: cth:Cthe_1750 hypothetical protein; helix-turn-helix domain-containing protein 4100068 5314085 Amet_4004 Alkaliphilus metalliredigens QYMF helix-turn-helix domain-containing protein YP_001321745.1 4099844 R 293826 CDS YP_001321746.1 150391697 5314086 complement(4100212..4101774) 1 NC_009633.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: bca:BCE_0419 DNA recombinase, putative; resolvase domain-containing protein 4101774 5314086 Amet_4005 Alkaliphilus metalliredigens QYMF resolvase domain-containing protein YP_001321746.1 4100212 R 293826 CDS YP_001321747.1 150391698 5314087 complement(4101776..4102192) 1 NC_009633.1 PFAM: Recombinase; KEGG: bca:BCE_0418 hypothetical protein; recombinase 4102192 5314087 Amet_4006 Alkaliphilus metalliredigens QYMF recombinase YP_001321747.1 4101776 R 293826 CDS YP_001321748.1 150391699 5314088 complement(4102193..4103758) 1 NC_009633.1 PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: bca:BCE_0417 DNA recombinase, putative; resolvase domain-containing protein 4103758 5314088 Amet_4007 Alkaliphilus metalliredigens QYMF resolvase domain-containing protein YP_001321748.1 4102193 R 293826 CDS YP_001321749.1 150391700 5314089 complement(4103820..4104125) 1 NC_009633.1 KEGG: bca:BCE_0416 hypothetical protein; hypothetical protein 4104125 5314089 Amet_4008 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321749.1 4103820 R 293826 CDS YP_001321750.1 150391701 5314090 complement(4104091..4106040) 1 NC_009633.1 PFAM: DNA-directed DNA polymerase; KEGG: bca:BCE_0377 DNA polymerase I; DNA-directed DNA polymerase 4106040 5314090 Amet_4009 Alkaliphilus metalliredigens QYMF DNA-directed DNA polymerase YP_001321750.1 4104091 R 293826 CDS YP_001321751.1 150391702 5314091 complement(4106028..4106537) 1 NC_009633.1 PFAM: NUMOD4 domain protein; KEGG: sav:SAV0865 hypothetical protein; NUMOD4 domain-containing protein 4106537 5314091 Amet_4010 Alkaliphilus metalliredigens QYMF NUMOD4 domain-containing protein YP_001321751.1 4106028 R 293826 CDS YP_001321752.1 150391703 5314092 complement(4106611..4107162) 1 NC_009633.1 KEGG: bca:BCE_0376 hypothetical protein; hypothetical protein 4107162 5314092 Amet_4011 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321752.1 4106611 R 293826 CDS YP_001321753.1 150391704 5314093 complement(4107168..4108304) 1 NC_009633.1 KEGG: bca:BCE_0375 hypothetical protein; hypothetical protein 4108304 5314093 Amet_4012 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321753.1 4107168 R 293826 CDS YP_001321754.1 150391705 5314094 complement(4108297..4108620) 1 NC_009633.1 KEGG: bca:BCE_0374 rRNA biogenesis protein rrp5, putative; rRNA biogenesis protein rrp5 4108620 5314094 Amet_4013 Alkaliphilus metalliredigens QYMF rRNA biogenesis protein rrp5 YP_001321754.1 4108297 R 293826 CDS YP_001321755.1 150391706 5314095 complement(4108589..4108813) 1 NC_009633.1 KEGG: bca:BCE_0373 hypothetical protein; hypothetical protein 4108813 5314095 Amet_4014 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321755.1 4108589 R 293826 CDS YP_001321756.1 150391707 5314096 complement(4108950..4109639) 1 NC_009633.1 PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; Sporulation domain protein; KEGG: bca:BCE_0415 N-acetylmuramoyl-L-alanine amidase domain protein; N-acetylmuramoyl-L-alanine amidase 4109639 5314096 Amet_4015 Alkaliphilus metalliredigens QYMF N-acetylmuramoyl-L-alanine amidase YP_001321756.1 4108950 R 293826 CDS YP_001321757.1 150391708 5314097 complement(4109668..4110084) 1 NC_009633.1 TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin, toxin secretion/phage lysis; KEGG: cth:Cthe_1612 toxin secretion/phage lysis holin; toxin secretion/phage lysis holin 4110084 5314097 Amet_4016 Alkaliphilus metalliredigens QYMF toxin secretion/phage lysis holin YP_001321757.1 4109668 R 293826 CDS YP_001321758.1 150391709 5314098 complement(4110168..4111241) 1 NC_009633.1 hypothetical protein 4111241 5314098 Amet_4017 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321758.1 4110168 R 293826 CDS YP_001321759.1 150391710 5314099 complement(4111253..4112380) 1 NC_009633.1 hypothetical protein 4112380 5314099 Amet_4018 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321759.1 4111253 R 293826 CDS YP_001321760.1 150391711 5314100 complement(4112399..4114669) 1 NC_009633.1 KEGG: cth:Cthe_1618 hypothetical protein; hypothetical protein 4114669 5314100 Amet_4019 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321760.1 4112399 R 293826 CDS YP_001321761.1 150391712 5314101 complement(4114734..4114853) 1 NC_009633.1 KEGG: cth:Cthe_1621 hypothetical protein; hypothetical protein 4114853 5314101 Amet_4020 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321761.1 4114734 R 293826 CDS YP_001321762.1 150391713 5314102 complement(4114922..4115332) 1 NC_009633.1 KEGG: cth:Cthe_1622 hypothetical protein; hypothetical protein 4115332 5314102 Amet_4021 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321762.1 4114922 R 293826 CDS YP_001321763.1 150391714 5314103 complement(4115347..4116228) 1 NC_009633.1 TIGRFAM: phage major tail protein, phi13 family; KEGG: bca:BCE_0406 phage major tail protein, phi13 family subfamily; phi13 family phage major tail protein 4116228 5314103 Amet_4022 Alkaliphilus metalliredigens QYMF phi13 family phage major tail protein YP_001321763.1 4115347 R 293826 CDS YP_001321764.1 150391715 5314104 complement(4116229..4116573) 1 NC_009633.1 KEGG: cth:Cthe_1624 hypothetical protein; hypothetical protein 4116573 5314104 Amet_4023 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321764.1 4116229 R 293826 CDS YP_001321765.1 150391716 5314105 complement(4116570..4117001) 1 NC_009633.1 TIGRFAM: phage protein, HK97 gp10 family; KEGG: cth:Cthe_1625 phage protein, HK97 GP10 family; HK97 family phage protein 4117001 5314105 Amet_4024 Alkaliphilus metalliredigens QYMF HK97 family phage protein YP_001321765.1 4116570 R 293826 CDS YP_001321766.1 150391717 5314106 complement(4116994..4117326) 1 NC_009633.1 TIGRFAM: phage head-tail adaptor, putative; KEGG: bca:BCE_0403 phage head-tail adaptor, putative; phage head-tail adaptor 4117326 5314106 Amet_4025 Alkaliphilus metalliredigens QYMF phage head-tail adaptor YP_001321766.1 4116994 R 293826 CDS YP_001321767.1 150391718 5314107 complement(4117329..4117637) 1 NC_009633.1 TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: cth:Cthe_1627 uncharacterized phage protein; phage protein 4117637 5314107 Amet_4026 Alkaliphilus metalliredigens QYMF phage protein YP_001321767.1 4117329 R 293826 CDS YP_001321768.1 150391719 5314108 complement(4117656..4117868) 1 NC_009633.1 KEGG: bca:BCE_0401 hypothetical protein; hypothetical protein 4117868 5314108 Amet_4027 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321768.1 4117656 R 293826 CDS YP_001321769.1 150391720 5314109 complement(4117881..4119089) 1 NC_009633.1 TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: bca:BCE_0400 phage major capsid protein, HK97 family; HK97 family phage major capsid protein 4119089 5314109 Amet_4028 Alkaliphilus metalliredigens QYMF HK97 family phage major capsid protein YP_001321769.1 4117881 R 293826 CDS YP_001321770.1 150391721 5314110 complement(4119109..4119807) 1 NC_009633.1 PFAM: peptidase S14, ClpP; KEGG: cth:Cthe_1629 peptidase S14, ClpP; peptidase S14, ClpP 4119807 5314110 Amet_4029 Alkaliphilus metalliredigens QYMF peptidase S14, ClpP YP_001321770.1 4119109 R 293826 CDS YP_001321771.1 150391722 5314111 complement(4119807..4121066) 1 NC_009633.1 TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: det:DET1087 portal protein, HK97 family, putative; HK97 family phage portal protein 4121066 5314111 Amet_4030 Alkaliphilus metalliredigens QYMF HK97 family phage portal protein YP_001321771.1 4119807 R 293826 CDS YP_001321772.1 150391723 5314112 complement(4121137..4121547) 1 NC_009633.1 hypothetical protein 4121547 5314112 Amet_4031 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321772.1 4121137 R 293826 CDS YP_001321773.1 150391724 5314113 complement(4121598..4121996) 1 NC_009633.1 hypothetical protein 4121996 5314113 Amet_4032 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321773.1 4121598 R 293826 CDS YP_001321774.1 150391725 5314114 complement(4122082..4123647) 1 NC_009633.1 PFAM: phage Terminase; KEGG: bca:BCE_0397 phage terminase, large subunit, putative; phage terminase 4123647 5314114 Amet_4033 Alkaliphilus metalliredigens QYMF phage terminase YP_001321774.1 4122082 R 293826 CDS YP_001321775.1 150391726 5314115 complement(4123790..4124014) 1 NC_009633.1 hypothetical protein 4124014 5314115 Amet_4034 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321775.1 4123790 R 293826 CDS YP_001321776.1 150391727 5314116 complement(4124029..4124385) 1 NC_009633.1 KEGG: pac:PPA1584 hypothetical protein; hypothetical protein 4124385 5314116 Amet_4035 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321776.1 4124029 R 293826 CDS YP_001321777.1 150391728 5314117 complement(4124496..4124807) 1 NC_009633.1 KEGG: cth:Cthe_1725 hypothetical protein; hypothetical protein 4124807 5314117 Amet_4036 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321777.1 4124496 R 293826 CDS YP_001321778.1 150391729 5314118 complement(4124810..4125052) 1 NC_009633.1 KEGG: det:DET1090 hypothetical protein; hypothetical protein 4125052 5314118 Amet_4037 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321778.1 4124810 R 293826 CDS YP_001321779.1 150391730 5314119 complement(4125036..4125710) 1 NC_009633.1 KEGG: det:DET0065 virulence-related protein; virulence-like protein 4125710 5314119 Amet_4038 Alkaliphilus metalliredigens QYMF virulence-like protein YP_001321779.1 4125036 R 293826 CDS YP_001321780.1 150391731 5314120 complement(4125793..4127028) 1 NC_009633.1 PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; KEGG: bca:BCE_0392 DNA methylase, family protein; DNA methylase N-4/N-6 domain-containing protein 4127028 5314120 Amet_4039 Alkaliphilus metalliredigens QYMF DNA methylase N-4/N-6 domain-containing protein YP_001321780.1 4125793 R 293826 CDS YP_001321781.1 150391732 5314121 complement(4127025..4128206) 1 NC_009633.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 4128206 5314121 Amet_4040 Alkaliphilus metalliredigens QYMF S-adenosylmethionine synthetase YP_001321781.1 4127025 R 293826 CDS YP_001321782.1 150391733 5314122 complement(4128228..4128779) 1 NC_009633.1 KEGG: bca:BCE_0390 hypothetical protein; hypothetical protein 4128779 5314122 Amet_4041 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321782.1 4128228 R 293826 CDS YP_001321783.1 150391734 5314123 complement(4128870..4129244) 1 NC_009633.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: det:DET0069 HNH endonuclease domain protein; HNH endonuclease 4129244 5314123 Amet_4042 Alkaliphilus metalliredigens QYMF HNH endonuclease YP_001321783.1 4128870 R 293826 CDS YP_001321784.1 150391735 5314124 complement(4129376..4130014) 1 NC_009633.1 KEGG: lin:lin2582 hypothetical protein; hypothetical protein 4130014 5314124 Amet_4043 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321784.1 4129376 R 293826 CDS YP_001321785.1 150391736 5314125 complement(4130001..4130438) 1 NC_009633.1 KEGG: det:DET0070 hypothetical protein; hypothetical protein 4130438 5314125 Amet_4044 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321785.1 4130001 R 293826 CDS YP_001321786.1 150391737 5314126 complement(4130435..4130656) 1 NC_009633.1 KEGG: bca:BCE_0387 hypothetical protein; hypothetical protein 4130656 5314126 Amet_4045 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321786.1 4130435 R 293826 CDS YP_001321787.1 150391738 5314127 complement(4130653..4131897) 1 NC_009633.1 KEGG: bca:BCE_0386 phage-associated helicase; phage-associated helicase 4131897 5314127 Amet_4046 Alkaliphilus metalliredigens QYMF phage-associated helicase YP_001321787.1 4130653 R 293826 CDS YP_001321788.1 150391739 5314128 complement(4132007..4132516) 1 NC_009633.1 PFAM: HNH endonuclease; KEGG: cth:Cthe_1703 HNH endonuclease; HNH endonuclease 4132516 5314128 Amet_4047 Alkaliphilus metalliredigens QYMF HNH endonuclease YP_001321788.1 4132007 R 293826 CDS YP_001321789.1 150391740 5314129 complement(4132494..4132778) 1 NC_009633.1 PFAM: VRR_NUC domain protein; KEGG: bca:BCE_0385 phage protein, putative; VRR_NUC domain-containing protein 4132778 5314129 Amet_4048 Alkaliphilus metalliredigens QYMF VRR_NUC domain-containing protein YP_001321789.1 4132494 R 293826 CDS YP_001321790.1 150391741 5314130 complement(4132929..4135277) 1 NC_009633.1 PFAM: virulence-associated E family protein; KEGG: det:DET1098 virulence-associated protein E, putative; virulence-associated E family protein 4135277 5314130 Amet_4049 Alkaliphilus metalliredigens QYMF virulence-associated E family protein YP_001321790.1 4132929 R 293826 CDS YP_001321791.1 150391742 5314131 complement(4135347..4135778) 1 NC_009633.1 KEGG: bca:BCE_0383 hypothetical protein; hypothetical protein 4135778 5314131 Amet_4050 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321791.1 4135347 R 293826 CDS YP_001321792.1 150391743 5314132 complement(4135765..4135986) 1 NC_009633.1 hypothetical protein 4135986 5314132 Amet_4051 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321792.1 4135765 R 293826 CDS YP_001321793.1 150391744 5314133 complement(4136001..4136663) 1 NC_009633.1 TIGRFAM: Phage regulatory protein, Rha family; KEGG: pmu:PM1774 rha protein, phage phi-80; Rha family phage regulatory protein 4136663 5314133 Amet_4052 Alkaliphilus metalliredigens QYMF Rha family phage regulatory protein YP_001321793.1 4136001 R 293826 CDS YP_001321794.1 150391745 5314134 complement(4136728..4137255) 1 NC_009633.1 KEGG: bca:BCE_0372 hypothetical protein; hypothetical protein 4137255 5314134 Amet_4053 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321794.1 4136728 R 293826 CDS YP_001321795.1 150391746 5314135 complement(4137626..4139212) 1 NC_009633.1 KEGG: cth:Cthe_1654 hypothetical protein; hypothetical protein 4139212 5314135 Amet_4054 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321795.1 4137626 R 293826 CDS YP_001321796.1 150391747 5314136 complement(4139187..4139939) 1 NC_009633.1 PFAM: protein of unknown function DUF45; KEGG: tde:TDE0365 hypothetical protein; hypothetical protein 4139939 5314136 Amet_4055 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321796.1 4139187 R 293826 CDS YP_001321797.1 150391748 5314137 complement(4139932..4143057) 1 NC_009633.1 TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; KEGG: pcr:Pcryo_0948 type I site-specific deoxyribonuclease, HsdR family; HsdR family type I site-specific deoxyribonuclease 4143057 5314137 Amet_4056 Alkaliphilus metalliredigens QYMF HsdR family type I site-specific deoxyribonuclease YP_001321797.1 4139932 R 293826 CDS YP_001321798.1 150391749 5314138 complement(4143071..4144222) 1 NC_009633.1 PFAM: restriction modification system DNA specificity domain; KEGG: mma:MM2293 type I restriction-modification system specificity subunit; restriction modification system DNA specificity subunit 4144222 5314138 Amet_4057 Alkaliphilus metalliredigens QYMF restriction modification system DNA specificity subunit YP_001321798.1 4143071 R 293826 CDS YP_001321799.1 150391750 5314139 complement(4144216..4146909) 1 NC_009633.1 PFAM: N-6 DNA methylase; KEGG: tde:TDE0369 type I restriction-modification system, M subunit; N-6 DNA methylase 4146909 5314139 Amet_4058 Alkaliphilus metalliredigens QYMF N-6 DNA methylase YP_001321799.1 4144216 R 293826 CDS YP_001321800.1 150391751 5314140 complement(4146941..4147153) 1 NC_009633.1 hypothetical protein 4147153 5314140 Amet_4059 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321800.1 4146941 R 293826 CDS YP_001321801.1 150391752 5314141 complement(4147472..4148830) 1 NC_009633.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; protein of unknown function Met10; (Uracil-5)-methyltransferase; KEGG: bca:BCE_0363 RNA methyltransferase, TrmA family; RNA methyltransferase 4148830 5314141 Amet_4060 Alkaliphilus metalliredigens QYMF RNA methyltransferase YP_001321801.1 4147472 R 293826 CDS YP_001321802.1 150391753 5314142 4149073..4150359 1 NC_009633.1 hypothetical protein 4150359 5314142 Amet_4061 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321802.1 4149073 D 293826 CDS YP_001321803.1 150391754 5314143 complement(4150523..4151530) 1 NC_009633.1 PFAM: aldo/keto reductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: chy:CHY_1118 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 4151530 5314143 Amet_4062 Alkaliphilus metalliredigens QYMF aldo/keto reductase YP_001321803.1 4150523 R 293826 CDS YP_001321804.1 150391755 5314144 complement(4151551..4151946) 1 NC_009633.1 PFAM: FxsA cytoplasmic membrane protein; KEGG: bha:BH3162 hypothetical protein; FxsA cytoplasmic membrane protein 4151946 5314144 Amet_4063 Alkaliphilus metalliredigens QYMF FxsA cytoplasmic membrane protein YP_001321804.1 4151551 R 293826 CDS YP_001321805.1 150391756 5314145 complement(4152144..4152599) 1 NC_009633.1 PFAM: thioesterase superfamily protein; KEGG: cth:Cthe_1260 4-hydroxybenzoyl-CoA thioesterase; thioesterase superfamily protein 4152599 5314145 Amet_4064 Alkaliphilus metalliredigens QYMF thioesterase superfamily protein YP_001321805.1 4152144 R 293826 CDS YP_001321806.1 150391757 5314146 complement(4152753..4152989) 1 NC_009633.1 KEGG: cth:Cthe_0431 hypothetical protein; hypothetical protein 4152989 5314146 Amet_4065 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321806.1 4152753 R 293826 CDS YP_001321807.1 150391758 5314147 complement(4153079..4154251) 1 NC_009633.1 PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: tte:TTE0698 hypothetical protein; stage II sporulation E family protein 4154251 5314147 Amet_4066 Alkaliphilus metalliredigens QYMF stage II sporulation E family protein YP_001321807.1 4153079 R 293826 CDS YP_001321808.1 150391759 5314148 complement(4154251..4155960) 1 NC_009633.1 TIGRFAM: PAS sensor protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; hydrogenase large subunit domain protein; Fe-S cluster domain protein; KEGG: tte:TTE0697 ferredoxin 2; putative PAS/PAC sensor protein 4155960 5314148 Amet_4067 Alkaliphilus metalliredigens QYMF putative PAS/PAC sensor protein YP_001321808.1 4154251 R 293826 CDS YP_001321809.1 150391760 5314149 complement(4156252..4158012) 1 NC_009633.1 TIGRFAM: pyruvate kinase; PFAM: PEP-utilising protein, mobile region; Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta; KEGG: tte:TTE1815 pyruvate kinase; pyruvate kinase 4158012 5314149 Amet_4068 Alkaliphilus metalliredigens QYMF pyruvate kinase YP_001321809.1 4156252 R 293826 CDS YP_001321810.1 150391761 5314150 complement(4158029..4158988) 1 NC_009633.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 4158988 5314150 Amet_4069 Alkaliphilus metalliredigens QYMF 6-phosphofructokinase YP_001321810.1 4158029 R 293826 CDS YP_001321811.1 150391762 5314151 complement(4159083..4159274) 1 NC_009633.1 KEGG: cth:Cthe_1262 hypothetical protein; hypothetical protein 4159274 5314151 Amet_4070 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321811.1 4159083 R 293826 CDS YP_001321812.1 150391763 5314152 complement(4159662..4163129) 1 NC_009633.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE 4163129 dnaE 5314152 dnaE Alkaliphilus metalliredigens QYMF DNA polymerase III DnaE YP_001321812.1 4159662 R 293826 CDS YP_001321813.1 150391764 5314153 complement(4163135..4166068) 1 NC_009633.1 PFAM: transcriptional activator domain; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ctc:CTC02319 serine/threonine kinase, putative regulatory protein; transcriptional activator domain-containing protein 4166068 5314153 Amet_4072 Alkaliphilus metalliredigens QYMF transcriptional activator domain-containing protein YP_001321813.1 4163135 R 293826 CDS YP_001321814.1 150391765 5314154 complement(4166228..4167124) 1 NC_009633.1 TIGRFAM: glutamate formiminotransferase; PFAM: Formiminotransferase domain protein; Formiminotransferase-like; KEGG: pgi:PG0329 formiminotransferase-cyclodeaminase-related protein; glutamate formiminotransferase 4167124 5314154 Amet_4073 Alkaliphilus metalliredigens QYMF glutamate formiminotransferase YP_001321814.1 4166228 R 293826 CDS YP_001321815.1 150391766 5314155 complement(4167153..4169180) 1 NC_009633.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 4169180 5314155 Amet_4074 Alkaliphilus metalliredigens QYMF urocanate hydratase YP_001321815.1 4167153 R 293826 CDS YP_001321816.1 150391767 5314156 4169402..4170067 1 NC_009633.1 KEGG: bce:BC0021 deoxyguanosine kinase; deoxyguanosine kinase 4170067 5314156 Amet_4075 Alkaliphilus metalliredigens QYMF deoxyguanosine kinase YP_001321816.1 4169402 D 293826 CDS YP_001321817.1 150391768 5314157 4170061..4170750 1 NC_009633.1 PFAM: deoxynucleoside kinase; KEGG: oih:OB0015 deoxypurine kinase subunit; deoxynucleoside kinase 4170750 5314157 Amet_4076 Alkaliphilus metalliredigens QYMF deoxynucleoside kinase YP_001321817.1 4170061 D 293826 CDS YP_001321818.1 150391769 5314158 complement(4170837..4171307) 1 NC_009633.1 hypothetical protein 4171307 5314158 Amet_4077 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321818.1 4170837 R 293826 CDS YP_001321819.1 150391770 5314159 complement(4171476..4172003) 1 NC_009633.1 hypothetical protein 4172003 5314159 Amet_4078 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321819.1 4171476 R 293826 CDS YP_001321820.1 150391771 5314160 complement(4172066..4172275) 1 NC_009633.1 hypothetical protein 4172275 5314160 Amet_4079 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321820.1 4172066 R 293826 CDS YP_001321821.1 150391772 5314161 complement(4172279..4173022) 1 NC_009633.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein; IstB ATP binding domain-containing protein 4173022 5314161 Amet_4080 Alkaliphilus metalliredigens QYMF IstB ATP binding domain-containing protein YP_001321821.1 4172279 R 293826 CDS YP_001321822.1 150391773 5314162 complement(4173010..4174563) 1 NC_009633.1 PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22); integrase catalytic subunit 4174563 5314162 Amet_4081 Alkaliphilus metalliredigens QYMF integrase catalytic subunit YP_001321822.1 4173010 R 293826 CDS YP_001321823.1 150391774 5314163 complement(4174633..4175313) 1 NC_009633.1 PFAM: copper amine oxidase domain protein; copper amine oxidase domain-containing protein 4175313 5314163 Amet_4082 Alkaliphilus metalliredigens QYMF copper amine oxidase domain-containing protein YP_001321823.1 4174633 R 293826 CDS YP_001321824.1 150391775 5314164 4175651..4176262 1 NC_009633.1 SMART: Accessory gene regulator B; KEGG: dsy:DSY2528 hypothetical protein; accessory gene regulator B 4176262 5314164 Amet_4083 Alkaliphilus metalliredigens QYMF accessory gene regulator B YP_001321824.1 4175651 D 293826 CDS YP_001321825.1 150391776 5314165 complement(4177199..4178053) 1 NC_009633.1 KEGG: art:Arth_4398 hypothetical protein; hypothetical protein 4178053 5314165 Amet_4084 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321825.1 4177199 R 293826 CDS YP_001321826.1 150391777 5314167 complement(4179489..4180751) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; KEGG: swo:Swol_2401 signal transduction histidine kinase regulating citrate/malate metabolism; signal transduction histidine kinase regulating citrate/malate metabolism 4180751 5314167 Amet_4086 Alkaliphilus metalliredigens QYMF signal transduction histidine kinase regulating citrate/malate metabolism YP_001321826.1 4179489 R 293826 CDS YP_001321827.1 150391778 5314168 complement(4180775..4181494) 1 NC_009633.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: tte:TTE0561 response regulators of cell autolysis; LytTR family two component transcriptional regulator 4181494 5314168 Amet_4087 Alkaliphilus metalliredigens QYMF LytTR family two component transcriptional regulator YP_001321827.1 4180775 R 293826 CDS YP_001321828.1 150391779 5314169 complement(4181662..4182615) 1 NC_009633.1 PFAM: protein of unknown function DUF199; KEGG: cac:CAC0513 uncharacterized conserved protein, similar to B.subtilis YvcL; hypothetical protein 4182615 5314169 Amet_4088 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321828.1 4181662 R 293826 CDS YP_001321829.1 150391780 5314170 4182730..4182891 1 NC_009633.1 PFAM: protein of unknown function DUF1540; hypothetical protein 4182891 5314170 Amet_4089 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321829.1 4182730 D 293826 CDS YP_001321830.1 150391781 5314171 complement(4182922..4183344) 1 NC_009633.1 PFAM: NUDIX hydrolase; KEGG: aae:aq_158 AP4A hydrolase; NUDIX hydrolase 4183344 5314171 Amet_4090 Alkaliphilus metalliredigens QYMF NUDIX hydrolase YP_001321830.1 4182922 R 293826 CDS YP_001321831.1 150391782 5314172 complement(4183818..4185107) 1 NC_009633.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: cno:NT01CX_1285 hypothetical UPF0052 protein; hypothetical protein 4185107 5314172 Amet_4091 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321831.1 4183818 R 293826 CDS YP_001321832.1 150391783 5314173 complement(4185155..4186033) 1 NC_009633.1 PFAM: uncharacterised P-loop ATPase protein UPF0042; KEGG: ctc:CTC02495 hypothetical protein; hypothetical protein 4186033 5314173 Amet_4092 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321832.1 4185155 R 293826 CDS YP_001321833.1 150391784 5314174 complement(4186075..4186989) 1 NC_009633.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 4186989 murB 5314174 murB Alkaliphilus metalliredigens QYMF UDP-N-acetylenolpyruvoylglucosamine reductase YP_001321833.1 4186075 R 293826 CDS YP_001321834.1 150391785 5314175 complement(4187188..4188543) 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 1; KEGG: tte:TTE1917 sugar-binding periplasmic proteins/domains; extracellular solute-binding protein 4188543 5314175 Amet_4094 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001321834.1 4187188 R 293826 CDS YP_001321835.1 150391786 5314176 complement(4188637..4189047) 1 NC_009633.1 KEGG: chy:CHY_0804 MOSC domain protein; hypothetical protein 4189047 5314176 Amet_4095 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321835.1 4188637 R 293826 CDS YP_001321836.1 150391787 5314177 complement(4189051..4190013) 1 NC_009633.1 TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY3488 hypothetical protein; molybdenum cofactor biosynthesis protein A 4190013 5314177 Amet_4096 Alkaliphilus metalliredigens QYMF molybdenum cofactor biosynthesis protein A YP_001321836.1 4189051 R 293826 CDS YP_001321837.1 150391788 5314178 4190412..4190909 1 NC_009633.1 PFAM: Rubrerythrin; KEGG: tko:TK1056 rubrerythrin-related protein; rubrerythrin 4190909 5314178 Amet_4097 Alkaliphilus metalliredigens QYMF rubrerythrin YP_001321837.1 4190412 D 293826 CDS YP_001321838.1 150391789 5314179 complement(4191038..4192624) 1 NC_009633.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: ppd:Ppro_3520 formate dehydrogenase, alpha subunit; molybdopterin oxidoreductase 4192624 5314179 Amet_4098 Alkaliphilus metalliredigens QYMF molybdopterin oxidoreductase YP_001321838.1 4191038 R 293826 CDS YP_001321839.1 150391790 5314180 complement(4192673..4193719) 1 NC_009633.1 PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; KEGG: ppd:Ppro_3520 formate dehydrogenase, alpha subunit; molybdopterin oxidoreductase Fe4S4 region 4193719 5314180 Amet_4099 Alkaliphilus metalliredigens QYMF molybdopterin oxidoreductase Fe4S4 region YP_001321839.1 4192673 R 293826 CDS YP_001321840.1 150391791 5314181 complement(4193735..4195531) 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: cth:Cthe_0341 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 4195531 5314181 Amet_4100 Alkaliphilus metalliredigens QYMF NADH dehydrogenase (quinone) YP_001321840.1 4193735 R 293826 CDS YP_001321841.1 150391792 5314182 complement(4195601..4195960) 1 NC_009633.1 KEGG: cth:Cthe_0340 ferredoxin; ferredoxin 4195960 5314182 Amet_4101 Alkaliphilus metalliredigens QYMF ferredoxin YP_001321841.1 4195601 R 293826 CDS YP_001321842.1 150391793 5314183 complement(4196005..4196484) 1 NC_009633.1 PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: cth:Cthe_0338 NADH-quinone oxidoreductase, E subunit; NADH dehydrogenase (ubiquinone), 24 kDa subunit 4196484 5314183 Amet_4102 Alkaliphilus metalliredigens QYMF NADH dehydrogenase (ubiquinone), 24 kDa subunit YP_001321842.1 4196005 R 293826 CDS YP_001321843.1 150391794 5314184 complement(4197116..4198315) 1 NC_009633.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Miro domain protein; KEGG: swo:Swol_0318 small GTP-binding protein domain; small GTP-binding protein 4198315 5314184 Amet_4103 Alkaliphilus metalliredigens QYMF small GTP-binding protein YP_001321843.1 4197116 R 293826 CDS YP_001321844.1 150391795 5314185 complement(4198316..4199626) 1 NC_009633.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tte:TTE1073 Biotin synthase and related enzymes; radical SAM domain-containing protein 4199626 5314185 Amet_4104 Alkaliphilus metalliredigens QYMF radical SAM domain-containing protein YP_001321844.1 4198316 R 293826 CDS YP_001321845.1 150391796 5314186 complement(4199653..4201026) 1 NC_009633.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH 4201026 thiH 5314186 thiH Alkaliphilus metalliredigens QYMF thiamine biosynthesis protein ThiH YP_001321845.1 4199653 R 293826 CDS YP_001321846.1 150391797 5314187 complement(4201055..4201300) 1 NC_009633.1 KEGG: swo:Swol_1023 hypothetical protein; hypothetical protein 4201300 5314187 Amet_4106 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321846.1 4201055 R 293826 CDS YP_001321847.1 150391798 5314188 complement(4201717..4203372) 1 NC_009633.1 TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; hydrogenase large subunit domain protein; KEGG: cth:Cthe_0342 hydrogenase, Fe-only; hydrogenase, Fe-only 4203372 5314188 Amet_4107 Alkaliphilus metalliredigens QYMF hydrogenase, Fe-only YP_001321847.1 4201717 R 293826 CDS YP_001321848.1 150391799 5314189 complement(4203415..4205205) 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: tte:TTE0893 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; NADH dehydrogenase (quinone) 4205205 5314189 Amet_4108 Alkaliphilus metalliredigens QYMF NADH dehydrogenase (quinone) YP_001321848.1 4203415 R 293826 CDS YP_001321849.1 150391800 5314190 complement(4205272..4205640) 1 NC_009633.1 KEGG: tte:TTE0892 ferredoxin; ferredoxin 4205640 5314190 Amet_4109 Alkaliphilus metalliredigens QYMF ferredoxin YP_001321849.1 4205272 R 293826 CDS YP_001321850.1 150391801 5314191 complement(4205672..4206154) 1 NC_009633.1 PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: cth:Cthe_0338 NADH-quinone oxidoreductase, E subunit; NADH dehydrogenase (ubiquinone), 24 kDa subunit 4206154 5314191 Amet_4110 Alkaliphilus metalliredigens QYMF NADH dehydrogenase (ubiquinone), 24 kDa subunit YP_001321850.1 4205672 R 293826 CDS YP_001321851.1 150391802 5314192 complement(4206641..4208362) 1 NC_009633.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; Resolvase helix-turn-helix domain protein; KEGG: ctc:CTC00072 signal-transduction and transcriptional-control protein; sigma-54 dependent trancsriptional regulator 4208362 5314192 Amet_4111 Alkaliphilus metalliredigens QYMF sigma-54 dependent trancsriptional regulator YP_001321851.1 4206641 R 293826 CDS YP_001321852.1 150391803 5314193 complement(4208455..4209498) 1 NC_009633.1 PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: fnu:FN1055 cysteine synthase; pyridoxal-5'-phosphate-dependent protein subunit beta 4209498 5314193 Amet_4112 Alkaliphilus metalliredigens QYMF pyridoxal-5'-phosphate-dependent protein subunit beta YP_001321852.1 4208455 R 293826 CDS YP_001321853.1 150391804 5314194 complement(4209669..4210307) 1 NC_009633.1 TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: ctc:CTC01761 dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaL 4210307 5314194 Amet_4113 Alkaliphilus metalliredigens QYMF dihydroxyacetone kinase subunit DhaL YP_001321853.1 4209669 R 293826 CDS YP_001321854.1 150391805 5314195 complement(4210316..4211299) 1 NC_009633.1 with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 4211299 5314195 Amet_4114 Alkaliphilus metalliredigens QYMF dihydroxyacetone kinase subunit DhaK YP_001321854.1 4210316 R 293826 CDS YP_001321855.1 150391806 5314196 complement(4211319..4212026) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_2498 ABC transporter related; ABC transporter-like protein 4212026 5314196 Amet_4115 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321855.1 4211319 R 293826 CDS YP_001321856.1 150391807 5314197 complement(4212019..4212792) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tth:TTC0969 branched-chain amino acid transport ATP-binding protein livG; ABC transporter-like protein 4212792 5314197 Amet_4116 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321856.1 4212019 R 293826 CDS YP_001321857.1 150391808 5314198 complement(4212794..4213876) 1 NC_009633.1 PFAM: inner-membrane translocator; KEGG: sat:SYN_00787 branched-chain amino acid transport system permease protein; inner-membrane translocator 4213876 5314198 Amet_4117 Alkaliphilus metalliredigens QYMF inner-membrane translocator YP_001321857.1 4212794 R 293826 CDS YP_001321858.1 150391809 5314199 complement(4213880..4214755) 1 NC_009633.1 PFAM: inner-membrane translocator; KEGG: chy:CHY_2231 high affinity branched-chain amino acid ABC transporter, permease protein; inner-membrane translocator 4214755 5314199 Amet_4118 Alkaliphilus metalliredigens QYMF inner-membrane translocator YP_001321858.1 4213880 R 293826 CDS YP_001321859.1 150391810 5314200 complement(4214864..4215991) 1 NC_009633.1 PFAM: Extracellular ligand-binding receptor; KEGG: bba:Bd3385 branched-chain amino acid ABC transporter, amino acid-binding protein; extracellular ligand-binding receptor 4215991 5314200 Amet_4119 Alkaliphilus metalliredigens QYMF extracellular ligand-binding receptor YP_001321859.1 4214864 R 293826 CDS YP_001321860.1 150391811 5314201 complement(4216135..4216641) 1 NC_009633.1 KEGG: tde:TDE2362 hypothetical protein; hypothetical protein 4216641 5314201 Amet_4120 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321860.1 4216135 R 293826 CDS YP_001321861.1 150391812 5314202 complement(4216945..4217895) 1 NC_009633.1 TIGRFAM: putative glucokinase, ROK family; PFAM: ROK family protein; ATPase, BadF/BadG/BcrA/BcrD type; KEGG: tte:TTE1961 transcriptional regulator; ROK family glucokinase 4217895 5314202 Amet_4121 Alkaliphilus metalliredigens QYMF ROK family glucokinase YP_001321861.1 4216945 R 293826 CDS YP_001321862.1 150391813 5314203 complement(4217912..4218841) 1 NC_009633.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 4218841 5314203 Amet_4122 Alkaliphilus metalliredigens QYMF HPr kinase/phosphorylase YP_001321862.1 4217912 R 293826 CDS YP_001321863.1 150391814 5314204 complement(4218856..4219059) 1 NC_009633.1 PFAM: PspC domain protein; KEGG: cth:Cthe_1057 phage shock protein C, PspC; phage shock protein PspC 4219059 5314204 Amet_4123 Alkaliphilus metalliredigens QYMF phage shock protein PspC YP_001321863.1 4218856 R 293826 CDS YP_001321864.1 150391815 5314205 complement(4219070..4220938) 1 NC_009633.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 4220938 uvrC 5314205 uvrC Alkaliphilus metalliredigens QYMF excinuclease ABC subunit C YP_001321864.1 4219070 R 293826 CDS YP_001321865.1 150391816 5314206 4221181..4221732 1 NC_009633.1 KEGG: cth:Cthe_2383 hypothetical protein; hypothetical protein 4221732 5314206 Amet_4125 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321865.1 4221181 D 293826 CDS YP_001321866.1 150391817 5314207 complement(4221777..4224614) 1 NC_009633.1 TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0311 excinuclease ABC, A subunit; excinuclease ABC subunit A 4224614 5314207 Amet_4126 Alkaliphilus metalliredigens QYMF excinuclease ABC subunit A YP_001321866.1 4221777 R 293826 CDS YP_001321867.1 150391818 5314208 complement(4224617..4226611) 1 NC_009633.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 4226611 5314208 Amet_4127 Alkaliphilus metalliredigens QYMF excinuclease ABC subunit B YP_001321867.1 4224617 R 293826 CDS YP_001321868.1 150391819 5314209 complement(4227328..4228545) 1 NC_009633.1 TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: tte:TTE1974 periplasmic protease; carboxyl-terminal protease 4228545 5314209 Amet_4128 Alkaliphilus metalliredigens QYMF carboxyl-terminal protease YP_001321868.1 4227328 R 293826 CDS YP_001321869.1 150391820 5314210 complement(4228807..4229940) 1 NC_009633.1 PFAM: peptidase M23B; KEGG: tte:TTE1975 membrane proteins related to metalloendopeptidase; peptidase M23B 4229940 5314210 Amet_4129 Alkaliphilus metalliredigens QYMF peptidase M23B YP_001321869.1 4228807 R 293826 CDS YP_001321870.1 150391821 5314211 complement(4229963..4230859) 1 NC_009633.1 PFAM: protein of unknown function DUF214; KEGG: tte:TTE1976 cell division protein; hypothetical protein 4230859 5314211 Amet_4130 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321870.1 4229963 R 293826 CDS YP_001321871.1 150391822 5314212 complement(4230849..4231535) 1 NC_009633.1 TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE1977 predicted ATPase involved in cell division; cell division ATP-binding protein FtsE 4231535 5314212 Amet_4131 Alkaliphilus metalliredigens QYMF cell division ATP-binding protein FtsE YP_001321871.1 4230849 R 293826 CDS YP_001321872.1 150391823 5314213 4231784..4232362 1 NC_009633.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: mta:Moth_2140 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 4232362 5314213 Amet_4132 Alkaliphilus metalliredigens QYMF 5-formyltetrahydrofolate cyclo-ligase YP_001321872.1 4231784 D 293826 CDS YP_001321873.1 150391824 5314214 complement(4232389..4234752) 1 NC_009633.1 PFAM: peptidase S16, lon domain protein; KEGG: tte:TTE1771 predicted ATP-dependent protease; peptidase S16, lon domain-containing protein 4234752 5314214 Amet_4133 Alkaliphilus metalliredigens QYMF peptidase S16, lon domain-containing protein YP_001321873.1 4232389 R 293826 CDS YP_001321874.1 150391825 5314215 complement(4234987..4236012) 1 NC_009633.1 PFAM: Peptidoglycan-binding LysM; KEGG: cth:Cthe_3005 peptidoglycan-binding LysM; peptidoglycan-binding protein LysM 4236012 5314215 Amet_4134 Alkaliphilus metalliredigens QYMF peptidoglycan-binding protein LysM YP_001321874.1 4234987 R 293826 CDS YP_001321875.1 150391826 5314216 complement(4236274..4239102) 1 NC_009633.1 KEGG: cth:Cthe_2182 Ig-like, group 2; related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like protein; exopolysaccharide biosynthesis protein 4239102 5314216 Amet_4135 Alkaliphilus metalliredigens QYMF exopolysaccharide biosynthesis protein YP_001321875.1 4236274 R 293826 CDS YP_001321876.1 150391827 5314217 complement(4239278..4239757) 1 NC_009633.1 KEGG: tte:TTE0116 S-layer homology domain; hypothetical protein 4239757 5314217 Amet_4136 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321876.1 4239278 R 293826 CDS YP_001321877.1 150391828 5314218 complement(4239812..4239946) 1 NC_009633.1 hypothetical protein 4239946 5314218 Amet_4137 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321877.1 4239812 R 293826 CDS YP_001321878.1 150391829 5314219 complement(4239971..4240837) 1 NC_009633.1 PFAM: protein of unknown function DUF161; KEGG: tde:TDE2546 hypothetical protein; hypothetical protein 4240837 5314219 Amet_4138 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321878.1 4239971 R 293826 CDS YP_001321879.1 150391830 5314220 complement(4240847..4241572) 1 NC_009633.1 TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: tte:TTE2163 teichoic acid biosynthesis proteins; WecB/TagA/CpsF family glycosyl transferase 4241572 5314220 Amet_4139 Alkaliphilus metalliredigens QYMF WecB/TagA/CpsF family glycosyl transferase YP_001321879.1 4240847 R 293826 CDS YP_001321880.1 150391831 5314221 complement(4241574..4242680) 1 NC_009633.1 PFAM: polysaccharide pyruvyl transferase; KEGG: tte:TTE2164 hypothetical protein; polysaccharide pyruvyl transferase 4242680 5314221 Amet_4140 Alkaliphilus metalliredigens QYMF polysaccharide pyruvyl transferase YP_001321880.1 4241574 R 293826 CDS YP_001321881.1 150391832 5314222 complement(4242673..4244844) 1 NC_009633.1 KEGG: tte:TTE2165 hypothetical protein; hypothetical protein 4244844 5314222 Amet_4141 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321881.1 4242673 R 293826 CDS YP_001321882.1 150391833 5314223 complement(4245167..4245700) 1 NC_009633.1 KEGG: cth:Cthe_2700 hypothetical protein; hypothetical protein 4245700 5314223 Amet_4142 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321882.1 4245167 R 293826 CDS YP_001321883.1 150391834 5314224 complement(4245904..4246254) 1 NC_009633.1 PFAM: PemK family protein; KEGG: tte:TTE2166 growth inhibitor; transcriptional modulator of MazE/toxin MazF 4246254 5314224 Amet_4143 Alkaliphilus metalliredigens QYMF transcriptional modulator of MazE/toxin MazF YP_001321883.1 4245904 R 293826 CDS YP_001321884.1 150391835 5314225 complement(4246256..4246531) 1 NC_009633.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: tte:TTE2167 predicted transcriptional regulator containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; CopG family transcriptional regulator 4246531 5314225 Amet_4144 Alkaliphilus metalliredigens QYMF CopG family transcriptional regulator YP_001321884.1 4246256 R 293826 CDS YP_001321885.1 150391836 5314226 complement(4246716..4247891) 1 NC_009633.1 TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; KEGG: mmp:MMP1512 alanine racemase; alanine racemase 4247891 5314226 Amet_4145 Alkaliphilus metalliredigens QYMF alanine racemase YP_001321885.1 4246716 R 293826 CDS YP_001321886.1 150391837 5314227 complement(4247904..4248563) 1 NC_009633.1 KEGG: tte:TTE2169 hypothetical protein; Outer membrane lipoprotein-sorting protein-like protein 4248563 5314227 Amet_4146 Alkaliphilus metalliredigens QYMF Outer membrane lipoprotein-sorting protein-like protein YP_001321886.1 4247904 R 293826 CDS YP_001321887.1 150391838 5314228 complement(4248663..4249031) 1 NC_009633.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: ctc:CTC02516 4'-phosphopantetheinyl transferase; holo-(acyl-carrier-protein) synthase 4249031 5314228 Amet_4147 Alkaliphilus metalliredigens QYMF holo-(acyl-carrier-protein) synthase YP_001321887.1 4248663 R 293826 CDS YP_001321888.1 150391839 5314229 complement(4249203..4249823) 1 NC_009633.1 KEGG: cth:Cthe_2695 hypothetical protein; hypothetical protein 4249823 5314229 Amet_4148 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321888.1 4249203 R 293826 CDS YP_001321889.1 150391840 5314230 4250061..4251041 1 NC_009633.1 KEGG: cth:Cthe_1300 hypothetical protein; hypothetical protein 4251041 5314230 Amet_4149 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321889.1 4250061 D 293826 CDS YP_001321890.1 150391841 5314231 complement(4251123..4252985) 1 NC_009633.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ctc:CTC01337 sodium/proton antiporter ShaA; NADH dehydrogenase (quinone) 4252985 5314231 Amet_4150 Alkaliphilus metalliredigens QYMF NADH dehydrogenase (quinone) YP_001321890.1 4251123 R 293826 CDS YP_001321891.1 150391842 5314232 complement(4253020..4255104) 1 NC_009633.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ctc:CTC01337 sodium/proton antiporter ShaA; NADH dehydrogenase (quinone) 4255104 5314232 Amet_4151 Alkaliphilus metalliredigens QYMF NADH dehydrogenase (quinone) YP_001321891.1 4253020 R 293826 CDS YP_001321892.1 150391843 5314233 complement(4255113..4256609) 1 NC_009633.1 PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ctc:CTC01339 sodium/proton antiporter ShaD; NADH dehydrogenase (quinone) 4256609 5314233 Amet_4152 Alkaliphilus metalliredigens QYMF NADH dehydrogenase (quinone) YP_001321892.1 4255113 R 293826 CDS YP_001321893.1 150391844 5314234 complement(4256602..4256985) 1 NC_009633.1 PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: ctc:CTC01340 sodium/proton antiporter; NADH-ubiquinone oxidoreductase, chain 4L 4256985 5314234 Amet_4153 Alkaliphilus metalliredigens QYMF NADH-ubiquinone oxidoreductase, chain 4L YP_001321893.1 4256602 R 293826 CDS YP_001321894.1 150391845 5314235 complement(4256985..4257407) 1 NC_009633.1 PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: ctc:CTC01341 sodium/proton antiporter; Na+/H+ antiporter MnhB subunit-like protein 4257407 5314235 Amet_4154 Alkaliphilus metalliredigens QYMF Na+/H+ antiporter MnhB subunit-like protein YP_001321894.1 4256985 R 293826 CDS YP_001321895.1 150391846 5314236 complement(4257409..4257714) 1 NC_009633.1 KEGG: tko:TK2084 membrane bound hydrogenase, MbhE subunit; hypothetical protein 4257714 5314236 Amet_4155 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321895.1 4257409 R 293826 CDS YP_001321896.1 150391847 5314237 complement(4257711..4257950) 1 NC_009633.1 KEGG: hal:VNG0566C putative multicomponent Na+:H+ antiporter subunit B; putative multicomponent Na+:H+ antiporter subunit B 4257950 5314237 Amet_4156 Alkaliphilus metalliredigens QYMF putative multicomponent Na+:H+ antiporter subunit B YP_001321896.1 4257711 R 293826 CDS YP_001321897.1 150391848 5314238 complement(4257958..4258251) 1 NC_009633.1 TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: nph:NP0838A pH adaptation potassium efflux system protein G; sodium/hydrogen antiporter subunit G; monovalent cation/proton antiporter subunit MnhG/PhaG 4258251 5314238 Amet_4157 Alkaliphilus metalliredigens QYMF monovalent cation/proton antiporter subunit MnhG/PhaG YP_001321897.1 4257958 R 293826 CDS YP_001321898.1 150391849 5314239 complement(4258264..4258530) 1 NC_009633.1 PFAM: multiple resistance and pH regulation protein F; KEGG: hwa:HQ1675A pH adaptation potassium efflux system protein F; sodium-potassium/hydrogen antiporter subunit F; multiple resistance and pH regulation protein F 4258530 5314239 Amet_4158 Alkaliphilus metalliredigens QYMF multiple resistance and pH regulation protein F YP_001321898.1 4258264 R 293826 CDS YP_001321899.1 150391850 5314240 complement(4258527..4259036) 1 NC_009633.1 PFAM: cation antiporter; KEGG: ctc:CTC01342 sodium/proton antiporter ShaE; cation antiporter 4259036 5314240 Amet_4159 Alkaliphilus metalliredigens QYMF cation antiporter YP_001321899.1 4258527 R 293826 CDS YP_001321900.1 150391851 5314241 complement(4259345..4259773) 1 NC_009633.1 KEGG: nph:NP2988A hypothetical protein; hypothetical protein 4259773 5314241 Amet_4160 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321900.1 4259345 R 293826 CDS YP_001321901.1 150391852 5314242 complement(4259784..4260143) 1 NC_009633.1 KEGG: nph:NP2988A hypothetical protein; hypothetical protein 4260143 5314242 Amet_4161 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321901.1 4259784 R 293826 CDS YP_001321902.1 150391853 5314243 complement(4260157..4260429) 1 NC_009633.1 hypothetical protein 4260429 5314243 Amet_4162 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321902.1 4260157 R 293826 CDS YP_001321903.1 150391854 5314244 complement(4260457..4261233) 1 NC_009633.1 KEGG: oih:OB1023 hypothetical protein; hypothetical protein 4261233 5314244 Amet_4163 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321903.1 4260457 R 293826 CDS YP_001321904.1 150391855 5314245 complement(4261217..4262227) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB1022 ABC transporter ATP-binding protein; ABC transporter-like protein 4262227 5314245 Amet_4164 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321904.1 4261217 R 293826 CDS YP_001321905.1 150391856 5314246 complement(4262242..4262643) 1 NC_009633.1 hypothetical protein 4262643 5314246 Amet_4165 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321905.1 4262242 R 293826 CDS YP_001321906.1 150391857 5314247 complement(4262858..4263307) 1 NC_009633.1 PFAM: CBS domain containing protein; KEGG: swo:Swol_1883 CBS domain containing membrane protein; hypothetical protein 4263307 5314247 Amet_4166 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321906.1 4262858 R 293826 CDS YP_001321907.1 150391858 5314248 complement(4263432..4266956) 1 NC_009633.1 PFAM: SMC domain protein; KEGG: tte:TTE0266 ATPase involved in DNA repair; SMC domain-containing protein 4266956 5314248 Amet_4167 Alkaliphilus metalliredigens QYMF SMC domain-containing protein YP_001321907.1 4263432 R 293826 CDS YP_001321908.1 150391859 5314249 complement(4266946..4268166) 1 NC_009633.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: cno:NT01CX_1250 DNA repair exonuclease, putative; nuclease SbcCD subunit D 4268166 5314249 Amet_4168 Alkaliphilus metalliredigens QYMF nuclease SbcCD subunit D YP_001321908.1 4266946 R 293826 CDS YP_001321909.1 150391860 5314250 complement(4268163..4271756) 1 NC_009633.1 TIGRFAM: Recombination helicase AddA; PFAM: UvrD/REP helicase; KEGG: swo:Swol_1146 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); recombination helicase AddA 4271756 5314250 Amet_4169 Alkaliphilus metalliredigens QYMF recombination helicase AddA YP_001321909.1 4268163 R 293826 CDS YP_001321910.1 150391861 5314251 4272437..4273108 1 NC_009633.1 hypothetical protein 4273108 5314251 Amet_4170 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321910.1 4272437 D 293826 CDS YP_001321911.1 150391862 5314252 complement(4273176..4274153) 1 NC_009633.1 PFAM: S-layer domain protein; KEGG: mta:Moth_2341 hypothetical protein; S-layer protein 4274153 5314252 Amet_4171 Alkaliphilus metalliredigens QYMF S-layer protein YP_001321911.1 4273176 R 293826 CDS YP_001321912.1 150391863 5314253 complement(4274672..4275334) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: btl:BALH_2727 ABC transporter, ATP-binding protein; ABC transporter-like protein 4275334 5314253 Amet_4172 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321912.1 4274672 R 293826 CDS YP_001321913.1 150391864 5314254 complement(4275337..4276611) 1 NC_009633.1 KEGG: btk:BT9727_1600 conserved hypothetical protein, possible permease; hypothetical protein 4276611 5314254 Amet_4173 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321913.1 4275337 R 293826 CDS YP_001321914.1 150391865 5314255 complement(4276605..4277615) 1 NC_009633.1 KEGG: btk:BT9727_1599 hypothetical protein; hypothetical protein 4277615 5314255 Amet_4174 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321914.1 4276605 R 293826 CDS YP_001321915.1 150391866 5314256 complement(4278275..4278445) 1 NC_009633.1 hypothetical protein 4278445 5314256 Amet_4175 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321915.1 4278275 R 293826 CDS YP_001321916.1 150391867 5314257 complement(4278498..4281947) 1 NC_009633.1 TIGRFAM: ATP-dependent nuclease subunit AddB; KEGG: swo:Swol_1142 ATP-dependent nuclease subunit B; ATP-dependent nuclease subunit AddB 4281947 5314257 Amet_4176 Alkaliphilus metalliredigens QYMF ATP-dependent nuclease subunit AddB YP_001321916.1 4278498 R 293826 CDS YP_001321917.1 150391868 5314258 4282229..4283455 1 NC_009633.1 KEGG: cac:CAC0475 HD-GYP domain; putative metal dependent phosphohydrolase 4283455 5314258 Amet_4177 Alkaliphilus metalliredigens QYMF putative metal dependent phosphohydrolase YP_001321917.1 4282229 D 293826 CDS YP_001321918.1 150391869 5314259 complement(4283468..4283725) 1 NC_009633.1 hypothetical protein 4283725 5314259 Amet_4178 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321918.1 4283468 R 293826 CDS YP_001321919.1 150391870 5314260 complement(4283838..4284815) 1 NC_009633.1 PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: aba:Acid345_4294 metal dependent phosphohydrolase; metal dependent phosphohydrolase 4284815 5314260 Amet_4179 Alkaliphilus metalliredigens QYMF metal dependent phosphohydrolase YP_001321919.1 4283838 R 293826 CDS YP_001321920.1 150391871 5314261 4285075..4285686 1 NC_009633.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_1771 rubrerythrin; rubrerythrin 4285686 5314261 Amet_4180 Alkaliphilus metalliredigens QYMF rubrerythrin YP_001321920.1 4285075 D 293826 CDS YP_001321921.1 150391872 5314262 complement(4285742..4286878) 1 NC_009633.1 TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cac:CAC0188 N-acetylglucosamine-6-phosphate deacetylase (gene nagA); N-acetylglucosamine-6-phosphate deacetylase 4286878 5314262 Amet_4181 Alkaliphilus metalliredigens QYMF N-acetylglucosamine-6-phosphate deacetylase YP_001321921.1 4285742 R 293826 CDS YP_001321922.1 150391873 5314263 complement(4287033..4287761) 1 NC_009633.1 TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: tte:TTE1023 6-phosphogluconolactonase/Glucosamine-6- phosphate isomerase/deaminase; glucosamine-6-phosphate isomerase 4287761 5314263 Amet_4182 Alkaliphilus metalliredigens QYMF glucosamine-6-phosphate isomerase YP_001321922.1 4287033 R 293826 CDS YP_001321923.1 150391874 5314264 complement(4287846..4289009) 1 NC_009633.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 4289009 anmK 5314264 anmK Alkaliphilus metalliredigens QYMF anhydro-N-acetylmuramic acid kinase YP_001321923.1 4287846 R 293826 CDS YP_001321924.1 150391875 5314265 complement(4289011..4289766) 1 NC_009633.1 PFAM: YdjC family protein; KEGG: tte:TTE0334 conserved hypothetical protein; hypothetical protein 4289766 5314265 Amet_4184 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321924.1 4289011 R 293826 CDS YP_001321925.1 150391876 5314266 complement(4289781..4291115) 1 NC_009633.1 PFAM: glycoside hydrolase, family 4; KEGG: tte:TTE0337 Alpha-galactosidases/6-phospho-beta- glucosidases, family 4 of glycosyl hydrolases; glycoside hydrolase 4291115 5314266 Amet_4185 Alkaliphilus metalliredigens QYMF glycoside hydrolase YP_001321925.1 4289781 R 293826 CDS YP_001321926.1 150391877 5314267 complement(4291136..4291459) 1 NC_009633.1 PFAM: phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit; KEGG: sha:SH0190 hypothetical protein; PTS system lactose/cellobiose-specific transporter subunit IIA 4291459 5314267 Amet_4186 Alkaliphilus metalliredigens QYMF PTS system lactose/cellobiose-specific transporter subunit IIA YP_001321926.1 4291136 R 293826 CDS YP_001321927.1 150391878 5314268 complement(4291623..4292897) 1 NC_009633.1 TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system, EIIC; KEGG: bcl:ABC3667 PTS system, diacetylchitobiose-specific enzyme II, C component; PTS system lactose/cellobiose family transporter subunit IIC 4292897 5314268 Amet_4187 Alkaliphilus metalliredigens QYMF PTS system lactose/cellobiose family transporter subunit IIC YP_001321927.1 4291623 R 293826 CDS YP_001321928.1 150391879 5314269 complement(4292921..4293238) 1 NC_009633.1 PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: btl:BALH_2193 PTS system, diacetylchitobiose-specific IIB component; phosphotransferase system, lactose/cellobiose-specific IIB subunit 4293238 5314269 Amet_4188 Alkaliphilus metalliredigens QYMF phosphotransferase system, lactose/cellobiose-specific IIB subunit YP_001321928.1 4292921 R 293826 CDS YP_001321929.1 150391880 5314270 complement(4293232..4294155) 1 NC_009633.1 TIGRFAM: glucokinase regulatory-like protein; KEGG: vpa:VP0543 glucokinase regulatory protein-related protein; RpiR family transcriptional regulator 4294155 5314270 Amet_4189 Alkaliphilus metalliredigens QYMF RpiR family transcriptional regulator YP_001321929.1 4293232 R 293826 CDS YP_001321930.1 150391881 5314271 complement(4294170..4295021) 1 NC_009633.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: tte:TTE0211 transcriptional regulator; RpiR family transcriptional regulator 4295021 5314271 Amet_4190 Alkaliphilus metalliredigens QYMF RpiR family transcriptional regulator YP_001321930.1 4294170 R 293826 CDS YP_001321931.1 150391882 5314272 complement(4295018..4295992) 1 NC_009633.1 PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: sha:SH0193 hypothetical protein; BadF/BadG/BcrA/BcrD type ATPase 4295992 5314272 Amet_4191 Alkaliphilus metalliredigens QYMF BadF/BadG/BcrA/BcrD type ATPase YP_001321931.1 4295018 R 293826 CDS YP_001321932.1 150391883 5314274 complement(4297053..4297376) 1 NC_009633.1 PFAM: phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit; KEGG: tte:TTE0336 Phosphotransferase system cellobiose-specific component IIA; PTS system lactose/cellobiose-specific transporter subunit IIA 4297376 5314274 Amet_4193 Alkaliphilus metalliredigens QYMF PTS system lactose/cellobiose-specific transporter subunit IIA YP_001321932.1 4297053 R 293826 CDS YP_001321933.1 150391884 5314275 complement(4297403..4298713) 1 NC_009633.1 PFAM: glycoside hydrolase, family 4; KEGG: tte:TTE0337 Alpha-galactosidases/6-phospho-beta- glucosidases, family 4 of glycosyl hydrolases; glycoside hydrolase 4298713 5314275 Amet_4194 Alkaliphilus metalliredigens QYMF glycoside hydrolase YP_001321933.1 4297403 R 293826 CDS YP_001321934.1 150391885 5314276 complement(4298781..4300070) 1 NC_009633.1 TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system, EIIC; KEGG: bcz:BCZK4903 PTS system, cellobiose-specific IIC component; PTS system lactose/cellobiose family transporter subunit IIC 4300070 5314276 Amet_4195 Alkaliphilus metalliredigens QYMF PTS system lactose/cellobiose family transporter subunit IIC YP_001321934.1 4298781 R 293826 CDS YP_001321935.1 150391886 5314277 complement(4300128..4300433) 1 NC_009633.1 PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: lmf:LMOf2365_2663 PTS system, beta-glucoside-specific, IIB component; phosphotransferase system, lactose/cellobiose-specific IIB subunit 4300433 5314277 Amet_4196 Alkaliphilus metalliredigens QYMF phosphotransferase system, lactose/cellobiose-specific IIB subunit YP_001321935.1 4300128 R 293826 CDS YP_001321936.1 150391887 5314278 complement(4300718..4303447) 1 NC_009633.1 PFAM: sigma-54 factor, interaction domain-containing protein; transcriptional regulator TrmB; PTS system fructose subfamily IIA component; PRD domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: lwe:lwe1738 transcriptional regulator, putative; transcriptional regulator TrmB 4303447 5314278 Amet_4197 Alkaliphilus metalliredigens QYMF transcriptional regulator TrmB YP_001321936.1 4300718 R 293826 CDS YP_001321937.1 150391888 5314279 complement(4303600..4304514) 1 NC_009633.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 4304514 5314279 Amet_4198 Alkaliphilus metalliredigens QYMF phosphatidylserine decarboxylase YP_001321937.1 4303600 R 293826 CDS YP_001321938.1 150391889 5314280 complement(4304933..4305376) 1 NC_009633.1 hypothetical protein 4305376 5314280 Amet_4199 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321938.1 4304933 R 293826 CDS YP_001321939.1 150391890 5314281 4305891..4306826 1 NC_009633.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 4306826 pyrB 5314281 pyrB Alkaliphilus metalliredigens QYMF aspartate carbamoyltransferase catalytic subunit YP_001321939.1 4305891 D 293826 CDS YP_001321940.1 150391891 5314282 4306820..4307248 1 NC_009633.1 involved in the allosteric regulation of aspartate carbamoyltransferase; aspartate carbamoyltransferase regulatory subunit 4307248 5314282 Amet_4201 Alkaliphilus metalliredigens QYMF aspartate carbamoyltransferase regulatory subunit YP_001321940.1 4306820 D 293826 CDS YP_001321941.1 150391892 5314283 complement(4307415..4308041) 1 NC_009633.1 PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: cac:CAC0240 response regulator (CheY-like recever domain and HTH DNA-binding domain); two component LuxR family transcriptional regulator 4308041 5314283 Amet_4202 Alkaliphilus metalliredigens QYMF two component LuxR family transcriptional regulator YP_001321941.1 4307415 R 293826 CDS YP_001321942.1 150391893 5314284 complement(4308016..4309122) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: cno:NT01CX_1313 histidine kinase-like ATPase; integral membrane sensor signal transduction histidine kinase 4309122 5314284 Amet_4203 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001321942.1 4308016 R 293826 CDS YP_001321943.1 150391894 5314285 complement(4309354..4310463) 1 NC_009633.1 PFAM: ABC-2 type transporter; KEGG: cac:CAC0243 predicted permease; ABC transporter 4310463 5314285 Amet_4204 Alkaliphilus metalliredigens QYMF ABC transporter YP_001321943.1 4309354 R 293826 CDS YP_001321944.1 150391895 5314286 complement(4310460..4311638) 1 NC_009633.1 PFAM: ABC-2 type transporter; KEGG: cac:CAC0242 predicted permease; ABC transporter 4311638 5314286 Amet_4205 Alkaliphilus metalliredigens QYMF ABC transporter YP_001321944.1 4310460 R 293826 CDS YP_001321945.1 150391896 5314287 complement(4311650..4312582) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1310 ABC-type multidrug transport system, ATP-ase compoment CAC0241; ABC transporter-like protein 4312582 5314287 Amet_4206 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001321945.1 4311650 R 293826 CDS YP_001321946.1 150391897 5314288 complement(4312739..4313320) 1 NC_009633.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 4313320 pyrE 5314288 pyrE Alkaliphilus metalliredigens QYMF orotate phosphoribosyltransferase YP_001321946.1 4312739 R 293826 CDS YP_001321947.1 150391898 5314289 complement(4313464..4314372) 1 NC_009633.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 4314372 5314289 Amet_4208 Alkaliphilus metalliredigens QYMF dihydroorotate dehydrogenase 1B YP_001321947.1 4313464 R 293826 CDS YP_001321948.1 150391899 5314290 complement(4314365..4315138) 1 NC_009633.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cth:Cthe_0948 oxidoreductase FAD/NAD(P)-binding; oxidoreductase FAD/NAD(P)-binding subunit 4315138 5314290 Amet_4209 Alkaliphilus metalliredigens QYMF oxidoreductase FAD/NAD(P)-binding subunit YP_001321948.1 4314365 R 293826 CDS YP_001321949.1 150391900 5314291 complement(4315135..4318347) 1 NC_009633.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 4318347 carB 5314291 carB Alkaliphilus metalliredigens QYMF carbamoyl phosphate synthase large subunit YP_001321949.1 4315135 R 293826 CDS YP_001321950.1 150391901 5314292 complement(4318326..4319411) 1 NC_009633.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 4319411 5314292 Amet_4211 Alkaliphilus metalliredigens QYMF carbamoyl phosphate synthase small subunit YP_001321950.1 4318326 R 293826 CDS YP_001321951.1 150391902 5314293 complement(4319427..4320350) 1 NC_009633.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: cth:Cthe_0951 orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 4320350 5314293 Amet_4212 Alkaliphilus metalliredigens QYMF orotidine 5'-phosphate decarboxylase YP_001321951.1 4319427 R 293826 CDS YP_001321952.1 150391903 5314294 complement(4320409..4321698) 1 NC_009633.1 TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cth:Cthe_0952 dihydroorotase, multifunctional complex type; dihydroorotase, multifunctional complex type 4321698 5314294 Amet_4213 Alkaliphilus metalliredigens QYMF dihydroorotase, multifunctional complex type YP_001321952.1 4320409 R 293826 CDS YP_001321953.1 150391904 5314295 complement(4322238..4323293) 1 NC_009633.1 KEGG: ctc:CTC01832 hypothetical protein; hypothetical protein 4323293 5314295 Amet_4214 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321953.1 4322238 R 293826 CDS YP_001321954.1 150391905 5314296 complement(4323733..4324554) 1 NC_009633.1 PFAM: peptidase M55, D-aminopeptidase; KEGG: mta:Moth_1265 peptidase M55, D-aminopeptidase; peptidase M55, D-aminopeptidase 4324554 5314296 Amet_4215 Alkaliphilus metalliredigens QYMF peptidase M55, D-aminopeptidase YP_001321954.1 4323733 R 293826 CDS YP_001321955.1 150391906 5314297 complement(4324707..4325810) 1 NC_009633.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 4325810 5314297 Amet_4216 Alkaliphilus metalliredigens QYMF DNA polymerase IV YP_001321955.1 4324707 R 293826 CDS YP_001321956.1 150391907 5314298 complement(4325886..4327277) 1 NC_009633.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 4327277 asnC 5314298 asnC Alkaliphilus metalliredigens QYMF asparaginyl-tRNA synthetase YP_001321956.1 4325886 R 293826 CDS YP_001321957.1 150391908 5314299 complement(4327713..4328990) 1 NC_009633.1 PFAM: major facilitator superfamily MFS_1; KEGG: btl:BALH_2399 permease; major facilitator superfamily transporter 4328990 5314299 Amet_4218 Alkaliphilus metalliredigens QYMF major facilitator superfamily transporter YP_001321957.1 4327713 R 293826 CDS YP_001321958.1 150391909 5314300 complement(4329121..4330350) 1 NC_009633.1 PFAM: regulatory protein, MerR; Methyltransferase type 11; KEGG: btl:BALH_2398 possible transcriptional regulator, MerR family; MerR family transcriptional regulator 4330350 5314300 Amet_4219 Alkaliphilus metalliredigens QYMF MerR family transcriptional regulator YP_001321958.1 4329121 R 293826 CDS YP_001321959.1 150391910 5314301 complement(4330376..4332721) 1 NC_009633.1 PFAM: DEAD_2 domain protein; SMART: DEXDc2; helicase c2; KEGG: cth:Cthe_0289 DEAD_2; DEAD/DEAH box helicase 4332721 5314301 Amet_4220 Alkaliphilus metalliredigens QYMF DEAD/DEAH box helicase YP_001321959.1 4330376 R 293826 CDS YP_001321960.1 150391911 5314302 complement(4332858..4333442) 1 NC_009633.1 KEGG: ctc:CTC00156 hypothetical protein; hypothetical protein 4333442 5314302 Amet_4221 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321960.1 4332858 R 293826 CDS YP_001321961.1 150391912 5314303 complement(4333447..4334433) 1 NC_009633.1 KEGG: ctc:CTC00157 hypothetical protein; hypothetical protein 4334433 5314303 Amet_4222 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321961.1 4333447 R 293826 CDS YP_001321962.1 150391913 5314304 complement(4334602..4334955) 1 NC_009633.1 TIGRFAM: Sporulation stage V, protein AE; PFAM: SpoVA protein; KEGG: bcl:ABC1827 stage V sporulation protein AE; sporulation stage V, protein AE 4334955 5314304 Amet_4223 Alkaliphilus metalliredigens QYMF sporulation stage V, protein AE YP_001321962.1 4334602 R 293826 CDS YP_001321963.1 150391914 5314305 complement(4334968..4335972) 1 NC_009633.1 PFAM: Stage V sporulation AD family protein; KEGG: gka:GK0854 stage V sporulation protein SpoVAD; stage V sporulation protein AD 4335972 5314305 Amet_4224 Alkaliphilus metalliredigens QYMF stage V sporulation protein AD YP_001321963.1 4334968 R 293826 CDS YP_001321964.1 150391915 5314306 complement(4335973..4336452) 1 NC_009633.1 TIGRFAM: Sporulation stage V, protein AC; PFAM: SpoVA protein; KEGG: btl:BALH_4637 stage V sporulation protein AC; sporulation stage V, protein AC 4336452 5314306 Amet_4225 Alkaliphilus metalliredigens QYMF sporulation stage V, protein AC YP_001321964.1 4335973 R 293826 CDS YP_001321965.1 150391916 5314307 complement(4336466..4337326) 1 NC_009633.1 PFAM: protein of unknown function DUF421; protein of unknown function DUF1657; KEGG: gka:GK0857 hypothetical protein; hypothetical protein 4337326 5314307 Amet_4226 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321965.1 4336466 R 293826 CDS YP_001321966.1 150391917 5314308 complement(4337340..4337546) 1 NC_009633.1 PFAM: protein of unknown function DUF1657; KEGG: oih:OB1383 hypothetical protein; hypothetical protein 4337546 5314308 Amet_4227 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321966.1 4337340 R 293826 CDS YP_001321967.1 150391918 5314309 complement(4337734..4338435) 1 NC_009633.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 4338435 deoD 5314309 deoD Alkaliphilus metalliredigens QYMF purine nucleoside phosphorylase YP_001321967.1 4337734 R 293826 CDS YP_001321968.1 150391919 5314310 complement(4338507..4339457) 1 NC_009633.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: tte:TTE0539 phosphoglycerate dehydrogenase and related dehydrogenase; D-isomer specific 2-hydroxyacid dehydrogenase 4339457 5314310 Amet_4229 Alkaliphilus metalliredigens QYMF D-isomer specific 2-hydroxyacid dehydrogenase YP_001321968.1 4338507 R 293826 CDS YP_001321969.1 150391920 5314311 complement(4339516..4340877) 1 NC_009633.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cac:CAC0847 probable cation efflux pump (multidrug resistance protein); MATE efflux family protein 4340877 5314311 Amet_4230 Alkaliphilus metalliredigens QYMF MATE efflux family protein YP_001321969.1 4339516 R 293826 CDS YP_001321970.1 150391921 5314312 complement(4341094..4341777) 1 NC_009633.1 PFAM: protein of unknown function DUF124; KEGG: chy:CHY_2133 conserved hypothetical protein TIGR00266; hypothetical protein 4341777 5314312 Amet_4231 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321970.1 4341094 R 293826 CDS YP_001321971.1 150391922 5314313 complement(4341960..4342550) 1 NC_009633.1 PFAM: thiamine monophosphate synthase; KEGG: cno:NT01CX_1504 thiamine-phosphate pyrophosphorylase, putative; thiamine-phosphate diphosphorylase 4342550 5314313 Amet_4232 Alkaliphilus metalliredigens QYMF thiamine-phosphate diphosphorylase YP_001321971.1 4341960 R 293826 CDS YP_001321972.1 150391923 5314314 complement(4342551..4343864) 1 NC_009633.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 4343864 5314314 Amet_4233 Alkaliphilus metalliredigens QYMF thiamine biosynthesis protein ThiC YP_001321972.1 4342551 R 293826 CDS YP_001321973.1 150391924 5314315 complement(4343888..4344991) 1 NC_009633.1 TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; KEGG: cth:Cthe_0599 thiazole biosynthesis protein ThiH; thiazole biosynthesis protein ThiH 4344991 5314315 Amet_4234 Alkaliphilus metalliredigens QYMF thiazole biosynthesis protein ThiH YP_001321973.1 4343888 R 293826 CDS YP_001321974.1 150391925 5314316 complement(4344991..4345767) 1 NC_009633.1 PFAM: thiazole biosynthesis family protein; KEGG: mta:Moth_1663 thiazole biosynthesis; thiazole biosynthesis family protein 4345767 5314316 Amet_4235 Alkaliphilus metalliredigens QYMF thiazole biosynthesis family protein YP_001321974.1 4344991 R 293826 CDS YP_001321975.1 150391926 5314317 complement(4345782..4346588) 1 NC_009633.1 catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate; thiamine biosynthesis protein ThiF 4346588 5314317 Amet_4236 Alkaliphilus metalliredigens QYMF thiamine biosynthesis protein ThiF YP_001321975.1 4345782 R 293826 CDS YP_001321976.1 150391927 5314318 complement(4346590..4346784) 1 NC_009633.1 TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: cno:NT01CX_1502 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 4346784 5314318 Amet_4237 Alkaliphilus metalliredigens QYMF thiamine biosynthesis protein ThiS YP_001321976.1 4346590 R 293826 CDS YP_001321977.1 150391928 5314319 complement(4347087..4347947) 1 NC_009633.1 KEGG: dsy:DSY0932 hypothetical protein; hypothetical protein 4347947 5314319 Amet_4238 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321977.1 4347087 R 293826 CDS YP_001321978.1 150391929 5314320 4348142..4348786 1 NC_009633.1 KEGG: pin:Ping_2866 hypothetical protein; hypothetical protein 4348786 5314320 Amet_4239 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321978.1 4348142 D 293826 CDS YP_001321979.1 150391930 5314323 complement(4349542..4349841) 1 NC_009633.1 KEGG: eca:ECA1285 hypothetical protein; hypothetical protein 4349841 5314323 Amet_4242 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321979.1 4349542 R 293826 CDS YP_001321980.1 150391931 5314324 complement(4349843..4351198) 1 NC_009633.1 PFAM: protein of unknown function DUF1446; KEGG: rru:Rru_A1474 protein of unknown function DUF1446; hypothetical protein 4351198 5314324 Amet_4243 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321980.1 4349843 R 293826 CDS YP_001321981.1 150391932 5314325 complement(4351244..4352539) 1 NC_009633.1 TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpc:RPC_0826 citrate transporter; CitMHS family citrate/H+ symporter 4352539 5314325 Amet_4244 Alkaliphilus metalliredigens QYMF CitMHS family citrate/H+ symporter YP_001321981.1 4351244 R 293826 CDS YP_001321982.1 150391933 5314326 complement(4353021..4354361) 1 NC_009633.1 TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: PAS domain containing protein; AAA ATPase; KEGG: bcl:ABC0453 transcriptional regulator; sigma-54 dependent trancsriptional regulator 4354361 5314326 Amet_4245 Alkaliphilus metalliredigens QYMF sigma-54 dependent trancsriptional regulator YP_001321982.1 4353021 R 293826 CDS YP_001321983.1 150391934 5314327 complement(4354987..4355649) 1 NC_009633.1 TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; KEGG: tte:TTE0721 Acyl-CoA:acetate CoA transferase beta subunit; 3-oxoacid CoA-transferase subunit B 4355649 5314327 Amet_4246 Alkaliphilus metalliredigens QYMF 3-oxoacid CoA-transferase subunit B YP_001321983.1 4354987 R 293826 CDS YP_001321984.1 150391935 5314328 complement(4355649..4356302) 1 NC_009633.1 TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; KEGG: spa:M6_Spy1391 acetate CoA-transferase alpha subunit; 3-oxoacid CoA-transferase subunit A 4356302 5314328 Amet_4247 Alkaliphilus metalliredigens QYMF 3-oxoacid CoA-transferase subunit A YP_001321984.1 4355649 R 293826 CDS YP_001321985.1 150391936 5314329 complement(4356690..4358102) 1 NC_009633.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: ctc:CTC00707 transcriptional regulatory protein; sigma-54 dependent trancsriptional regulator 4358102 5314329 Amet_4248 Alkaliphilus metalliredigens QYMF sigma-54 dependent trancsriptional regulator YP_001321985.1 4356690 R 293826 CDS YP_001321986.1 150391937 5314330 complement(4358180..4359487) 1 NC_009633.1 KEGG: dsy:DSY2439 hypothetical protein; hypothetical protein 4359487 5314330 Amet_4249 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321986.1 4358180 R 293826 CDS YP_001321987.1 150391938 5314331 complement(4359484..4360002) 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: dsy:DSY2440 hypothetical protein; ECF subfamily RNA polymerase sigma-24 factor 4360002 5314331 Amet_4250 Alkaliphilus metalliredigens QYMF ECF subfamily RNA polymerase sigma-24 factor YP_001321987.1 4359484 R 293826 CDS YP_001321988.1 150391939 5314332 complement(4360177..4360494) 1 NC_009633.1 hypothetical protein 4360494 5314332 Amet_4251 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321988.1 4360177 R 293826 CDS YP_001321989.1 150391940 5314333 complement(4360667..4361752) 1 NC_009633.1 PFAM: Peptidoglycan-binding LysM; polysaccharide deacetylase; KEGG: bha:BH1917 chitooligosaccharide deacetylase; polysaccharide deacetylase 4361752 5314333 Amet_4252 Alkaliphilus metalliredigens QYMF polysaccharide deacetylase YP_001321989.1 4360667 R 293826 CDS YP_001321990.1 150391941 5314334 4362075..4363307 1 NC_009633.1 PFAM: peptidase M29, aminopeptidase II; KEGG: bha:BH2245 aminopeptidase; peptidase M29, aminopeptidase II 4363307 5314334 Amet_4253 Alkaliphilus metalliredigens QYMF peptidase M29, aminopeptidase II YP_001321990.1 4362075 D 293826 CDS YP_001321991.1 150391942 5314335 complement(4363351..4365015) 1 NC_009633.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 4365015 5314335 Amet_4254 Alkaliphilus metalliredigens QYMF glutaminyl-tRNA synthetase YP_001321991.1 4363351 R 293826 CDS YP_001321992.1 150391943 5314336 complement(4365074..4365757) 1 NC_009633.1 TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: gka:GK3421 uracil-DNA glycosylase; uracil-DNA glycosylase 4365757 5314336 Amet_4255 Alkaliphilus metalliredigens QYMF uracil-DNA glycosylase YP_001321992.1 4365074 R 293826 CDS YP_001321993.1 150391944 5314337 complement(4365829..4367172) 1 NC_009633.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: cpf:CPF_1735 MATE efflux family protein; MATE efflux family protein 4367172 5314337 Amet_4256 Alkaliphilus metalliredigens QYMF MATE efflux family protein YP_001321993.1 4365829 R 293826 CDS YP_001321994.1 150391945 5314338 complement(4367261..4367968) 1 NC_009633.1 PFAM: protein of unknown function DUF45; KEGG: cpf:CPF_2595 hypothetical protein; hypothetical protein 4367968 5314338 Amet_4257 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321994.1 4367261 R 293826 CDS YP_001321995.1 150391946 5314339 4368152..4368883 1 NC_009633.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: tte:TTE1724 aspartate racemase; aspartate racemase 4368883 5314339 Amet_4258 Alkaliphilus metalliredigens QYMF aspartate racemase YP_001321995.1 4368152 D 293826 CDS YP_001321996.1 150391947 5314340 complement(4368933..4369424) 1 NC_009633.1 PFAM: Rubrerythrin; KEGG: tko:TK1056 rubrerythrin-related protein; rubrerythrin 4369424 5314340 Amet_4259 Alkaliphilus metalliredigens QYMF rubrerythrin YP_001321996.1 4368933 R 293826 CDS YP_001321997.1 150391948 5314341 complement(4369581..4370240) 1 NC_009633.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: ctc:CTC00586 hemolysin III; hemolysin III family channel protein 4370240 5314341 Amet_4260 Alkaliphilus metalliredigens QYMF hemolysin III family channel protein YP_001321997.1 4369581 R 293826 CDS YP_001321998.1 150391949 5314342 complement(4370432..4371628) 1 NC_009633.1 KEGG: ava:Ava_4088 hypothetical protein; hypothetical protein 4371628 5314342 Amet_4261 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001321998.1 4370432 R 293826 CDS YP_001321999.1 150391950 5314343 4371833..4372663 1 NC_009633.1 TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: ctc:CTC02522 ribonuclease BN; putative ribonuclease BN 4372663 5314343 Amet_4262 Alkaliphilus metalliredigens QYMF putative ribonuclease BN YP_001321999.1 4371833 D 293826 CDS YP_001322000.1 150391951 5314344 complement(4372709..4373566) 1 NC_009633.1 PFAM: TatD-related deoxyribonuclease; amidohydrolase 2; KEGG: cgb:cg0345 metal-dependent hydrolase of the TIM-barrel fold; amidohydrolase 2 4373566 5314344 Amet_4263 Alkaliphilus metalliredigens QYMF amidohydrolase 2 YP_001322000.1 4372709 R 293826 CDS YP_001322001.1 150391952 5314345 4373884..4374180 1 NC_009633.1 KEGG: csa:Csal_0787 YCII-related; hypothetical protein 4374180 5314345 Amet_4264 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322001.1 4373884 D 293826 CDS YP_001322002.1 150391953 5314346 complement(4374361..4375107) 1 NC_009633.1 PFAM: zinc/iron permease; KEGG: tte:TTE0144 predicted divalent heavy-metal cations transporter; zinc/iron permease 4375107 5314346 Amet_4265 Alkaliphilus metalliredigens QYMF zinc/iron permease YP_001322002.1 4374361 R 293826 CDS YP_001322003.1 150391954 5314347 complement(4375388..4375723) 1 NC_009633.1 PFAM: transcriptional coactivator/pterin dehydratase; KEGG: rxy:Rxyl_2043 transcriptional coactivator/pterin dehydratase; transcriptional coactivator/pterin dehydratase 4375723 5314347 Amet_4266 Alkaliphilus metalliredigens QYMF transcriptional coactivator/pterin dehydratase YP_001322003.1 4375388 R 293826 CDS YP_001322004.1 150391955 5314348 complement(4375890..4377155) 1 NC_009633.1 PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ecv:APECO1_3598 putative oxidoreductase; alcohol dehydrogenase 4377155 5314348 Amet_4267 Alkaliphilus metalliredigens QYMF alcohol dehydrogenase YP_001322004.1 4375890 R 293826 CDS YP_001322005.1 150391956 5314349 complement(4377156..4378106) 1 NC_009633.1 PFAM: PfkB domain protein; KEGG: cac:CAC0232 1-phosphofructokinase (fructoso 1-phosphate kinase); 1-phosphofructokinase 4378106 5314349 Amet_4268 Alkaliphilus metalliredigens QYMF 1-phosphofructokinase YP_001322005.1 4377156 R 293826 CDS YP_001322006.1 150391957 5314350 complement(4378145..4380016) 1 NC_009633.1 TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system, EIIC; phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: eca:ECA0087 PTS system, mannitol-specific IIabc component; PTS system mannitol-specific transporter subunit IIC 4380016 5314350 Amet_4269 Alkaliphilus metalliredigens QYMF PTS system mannitol-specific transporter subunit IIC YP_001322006.1 4378145 R 293826 CDS YP_001322007.1 150391958 5314351 complement(4380035..4382152) 1 NC_009633.1 PFAM: PRD domain protein; Helix-turn-helix, type 11 domain protein; KEGG: tte:TTE0598 putative transcriptional regulator; transcriptional antiterminator BglG 4382152 5314351 Amet_4270 Alkaliphilus metalliredigens QYMF transcriptional antiterminator BglG YP_001322007.1 4380035 R 293826 CDS YP_001322008.1 150391959 5314352 complement(4382258..4383652) 1 NC_009633.1 TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphotransferase system, EIIC; phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: gka:GK1948 PTS system, mannitol-permease II, BC component; PTS system mannitol-specific transporter subunit IIC 4383652 5314352 Amet_4271 Alkaliphilus metalliredigens QYMF PTS system mannitol-specific transporter subunit IIC YP_001322008.1 4382258 R 293826 CDS YP_001322009.1 150391960 5314353 complement(4383986..4384279) 1 NC_009633.1 PFAM: Coat F domain protein; KEGG: cac:CAC3317 spore coat protein F (CotF) family protein; coat F domain-containing protein 4384279 5314353 Amet_4272 Alkaliphilus metalliredigens QYMF coat F domain-containing protein YP_001322009.1 4383986 R 293826 CDS YP_001322010.1 150391961 5314354 complement(4384281..4384499) 1 NC_009633.1 KEGG: cac:CAC3318 hypothetical protein; hypothetical protein 4384499 5314354 Amet_4273 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322010.1 4384281 R 293826 CDS YP_001322011.1 150391962 5314355 complement(4384625..4385719) 1 NC_009633.1 TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: msu:MS1105 isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase 4385719 5314355 Amet_4274 Alkaliphilus metalliredigens QYMF tartrate dehydrogenase YP_001322011.1 4384625 R 293826 CDS YP_001322012.1 150391963 5314356 complement(4385738..4387318) 1 NC_009633.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 4387318 5314356 Amet_4275 Alkaliphilus metalliredigens QYMF D-3-phosphoglycerate dehydrogenase YP_001322012.1 4385738 R 293826 CDS YP_001322013.1 150391964 5314357 complement(4387590..4387724) 1 NC_009633.1 hypothetical protein 4387724 5314357 Amet_4276 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322013.1 4387590 R 293826 CDS YP_001322014.1 150391965 5314358 complement(4388006..4388845) 1 NC_009633.1 KEGG: rxy:Rxyl_3061 hypothetical protein; hypothetical protein 4388845 5314358 Amet_4277 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322014.1 4388006 R 293826 CDS YP_001322015.1 150391966 5314359 complement(4389009..4389554) 1 NC_009633.1 PFAM: NUDIX hydrolase; KEGG: cac:CAC1006 MutT-like (NUDIX) hydrolase; NUDIX hydrolase 4389554 5314359 Amet_4278 Alkaliphilus metalliredigens QYMF NUDIX hydrolase YP_001322015.1 4389009 R 293826 CDS YP_001322016.1 150391967 5314360 complement(4389659..4390525) 1 NC_009633.1 PFAM: Abortive infection protein; KEGG: gfo:orf15 metal-dependent membrane protease; abortive infection protein 4390525 5314360 Amet_4279 Alkaliphilus metalliredigens QYMF abortive infection protein YP_001322016.1 4389659 R 293826 CDS YP_001322017.1 150391968 5314362 complement(4391062..4391442) 1 NC_009633.1 KEGG: rba:RB11641 hypothetical protein; hypothetical protein 4391442 5314362 Amet_4281 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322017.1 4391062 R 293826 CDS YP_001322018.1 150391969 5314363 complement(4391479..4391841) 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC1007 predicted acetyltransferase; N-acetyltransferase GCN5 4391841 5314363 Amet_4282 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001322018.1 4391479 R 293826 CDS YP_001322019.1 150391970 5314364 complement(4392823..4393086) 1 NC_009633.1 hypothetical protein 4393086 5314364 Amet_4283 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322019.1 4392823 R 293826 CDS YP_001322020.1 150391971 5314365 complement(4393508..4394191) 1 NC_009633.1 KEGG: cpf:CPF_2608 putative membrane-associated zinc metalloprotease; hypothetical protein 4394191 5314365 Amet_4284 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322020.1 4393508 R 293826 CDS YP_001322021.1 150391972 5314366 4394427..4394633 1 NC_009633.1 PFAM: protein of unknown function UPF0150; KEGG: mta:Moth_0249 hypothetical protein; hypothetical protein 4394633 5314366 Amet_4285 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322021.1 4394427 D 293826 CDS YP_001322022.1 150391973 5314368 complement(4395093..4395266) 1 NC_009633.1 hypothetical protein 4395266 5314368 Amet_4287 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322022.1 4395093 R 293826 CDS YP_001322023.1 150391974 5314369 complement(4395905..4396636) 1 NC_009633.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: tko:TK0480 metal-dependent phosphohydrolase, HD superfamily; metal dependent phosphohydrolase 4396636 5314369 Amet_4288 Alkaliphilus metalliredigens QYMF metal dependent phosphohydrolase YP_001322023.1 4395905 R 293826 CDS YP_001322024.1 150391975 5314370 complement(4396857..4397291) 1 NC_009633.1 hypothetical protein 4397291 5314370 Amet_4289 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322024.1 4396857 R 293826 CDS YP_001322025.1 150391976 5314371 complement(4397526..4398599) 1 NC_009633.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: mbu:Mbur_2039 RNA-directed DNA polymerase; RNA-directed DNA polymerase 4398599 5314371 Amet_4290 Alkaliphilus metalliredigens QYMF RNA-directed DNA polymerase YP_001322025.1 4397526 R 293826 CDS YP_001322026.1 150391977 5314372 4399160..4401217 1 NC_009633.1 PFAM: Resolvase, N-terminal domain; KEGG: fra:Francci3_2088 recombinase; resolvase domain-containing protein 4401217 5314372 Amet_4291 Alkaliphilus metalliredigens QYMF resolvase domain-containing protein YP_001322026.1 4399160 D 293826 CDS YP_001322027.1 150391978 5314373 complement(4401226..4401660) 1 NC_009633.1 KEGG: mba:Mbar_A1733 reverse transcriptase; hypothetical protein 4401660 5314373 Amet_4292 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322027.1 4401226 R 293826 CDS YP_001322028.1 150391979 5314374 complement(4402496..4402960) 1 NC_009633.1 PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: cac:CAC2475 possible 5-Nitroimidazole antibiotics resistance protein, NimA-family; pyridoxamine 5'-phosphate oxidase-like protein 4402960 5314374 Amet_4293 Alkaliphilus metalliredigens QYMF pyridoxamine 5'-phosphate oxidase-like protein YP_001322028.1 4402496 R 293826 CDS YP_001322029.1 150391980 5314375 complement(4403398..4403643) 1 NC_009633.1 hypothetical protein 4403643 5314375 Amet_4294 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322029.1 4403398 R 293826 CDS YP_001322030.1 150391981 5314376 complement(4404127..4404747) 1 NC_009633.1 PFAM: Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: cno:NT01CX_2005 hypothetical protein; type 12 methyltransferase 4404747 5314376 Amet_4295 Alkaliphilus metalliredigens QYMF type 12 methyltransferase YP_001322030.1 4404127 R 293826 CDS YP_001322031.1 150391982 5314378 complement(4407622..4408242) 1 NC_009633.1 KEGG: bat:BAS3519 putative restriction endonuclease; putative restriction endonuclease 4408242 5314378 Amet_4297 Alkaliphilus metalliredigens QYMF putative restriction endonuclease YP_001322031.1 4407622 R 293826 CDS YP_001322032.1 150391983 5314380 complement(4408764..4410590) 1 NC_009633.1 TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II; sugar isomerase (SIS); KEGG: tte:TTE2190 glucosamine--fructose-6-phosphate aminotransferase (isomerizing); glucosamine--fructose-6-phosphate aminotransferase 4410590 5314380 Amet_4299 Alkaliphilus metalliredigens QYMF glucosamine--fructose-6-phosphate aminotransferase YP_001322032.1 4408764 R 293826 CDS YP_001322033.1 150391984 5314381 complement(4410986..4412332) 1 NC_009633.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 4412332 glmM 5314381 glmM Alkaliphilus metalliredigens QYMF phosphoglucosamine mutase YP_001322033.1 4410986 R 293826 CDS YP_001322034.1 150391985 5314382 complement(4412541..4414154) 1 NC_009633.1 PFAM: carbon starvation protein CstA; KEGG: bcl:ABC1450 carbon starvation-induced protein; carbon starvation protein CstA 4414154 5314382 Amet_4301 Alkaliphilus metalliredigens QYMF carbon starvation protein CstA YP_001322034.1 4412541 R 293826 CDS YP_001322035.1 150391986 5314383 complement(4414187..4414504) 1 NC_009633.1 hypothetical protein 4414504 5314383 Amet_4302 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322035.1 4414187 R 293826 CDS YP_001322036.1 150391987 5314384 complement(4414486..4415034) 1 NC_009633.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: sth:STH224 2-oxoglutarate oxidoreductase gamma subunit; pyruvate ferredoxin/flavodoxin oxidoreductase 4415034 5314384 Amet_4303 Alkaliphilus metalliredigens QYMF pyruvate ferredoxin/flavodoxin oxidoreductase YP_001322036.1 4414486 R 293826 CDS YP_001322037.1 150391988 5314385 complement(4415036..4415782) 1 NC_009633.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: cth:Cthe_0865 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin); thiamine pyrophosphate binding domain-containing protein 4415782 5314385 Amet_4304 Alkaliphilus metalliredigens QYMF thiamine pyrophosphate binding domain-containing protein YP_001322037.1 4415036 R 293826 CDS YP_001322038.1 150391989 5314386 complement(4415782..4416843) 1 NC_009633.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; 2-ketoisovalerate ferredoxin reductase 4416843 5314386 Amet_4305 Alkaliphilus metalliredigens QYMF 2-ketoisovalerate ferredoxin reductase YP_001322038.1 4415782 R 293826 CDS YP_001322039.1 150391990 5314387 complement(4416870..4417097) 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cth:Cthe_0867 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 4417097 5314387 Amet_4306 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001322039.1 4416870 R 293826 CDS YP_001322040.1 150391991 5314388 complement(4417200..4417871) 1 NC_009633.1 KEGG: cth:Cthe_0869 hypothetical protein; hypothetical protein 4417871 5314388 Amet_4307 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322040.1 4417200 R 293826 CDS YP_001322041.1 150391992 5314389 complement(4417886..4418962) 1 NC_009633.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 4418962 5314389 Amet_4308 Alkaliphilus metalliredigens QYMF butyrate kinase YP_001322041.1 4417886 R 293826 CDS YP_001322042.1 150391993 5314390 complement(4418982..4419890) 1 NC_009633.1 catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate; phosphate butyryltransferase 4419890 5314390 Amet_4309 Alkaliphilus metalliredigens QYMF phosphate butyryltransferase YP_001322042.1 4418982 R 293826 CDS YP_001322043.1 150391994 5314391 complement(4419883..4420971) 1 NC_009633.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 4420971 5314391 Amet_4310 Alkaliphilus metalliredigens QYMF butyrate kinase YP_001322043.1 4419883 R 293826 CDS YP_001322044.1 150391995 5314392 complement(4421174..4422901) 1 NC_009633.1 TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: bsu:BG11721 transcriptional activator involved in the control of isoleucine and valine utilization as sole nitrogen sources; sigma-54 dependent trancsriptional regulator 4422901 5314392 Amet_4311 Alkaliphilus metalliredigens QYMF sigma-54 dependent trancsriptional regulator YP_001322044.1 4421174 R 293826 CDS YP_001322045.1 150391996 5314393 complement(4422928..4424157) 1 NC_009633.1 PFAM: YbbR family protein; KEGG: tte:TTE2207 hypothetical protein; hypothetical protein 4424157 5314393 Amet_4312 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322045.1 4422928 R 293826 CDS YP_001322046.1 150391997 5314394 complement(4424154..4424978) 1 NC_009633.1 PFAM: protein of unknown function DUF147; KEGG: tte:TTE2209 hypothetical protein; hypothetical protein 4424978 5314394 Amet_4313 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322046.1 4424154 R 293826 CDS YP_001322047.1 150391998 5314395 4425389..4426099 1 NC_009633.1 PFAM: transport-associated protein; KEGG: chy:CHY_0056 putative osmotically inducible protein; transport-associated protein 4426099 5314395 Amet_4314 Alkaliphilus metalliredigens QYMF transport-associated protein YP_001322047.1 4425389 D 293826 CDS YP_001322048.1 150391999 5314396 complement(4426228..4426389) 1 NC_009633.1 hypothetical protein 4426389 5314396 Amet_4315 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322048.1 4426228 R 293826 CDS YP_001322049.1 150392000 5314397 complement(4426596..4427687) 1 NC_009633.1 PFAM: Shikimate/quinate 5-dehydrogenase; KEGG: tte:TTE2374 hypothetical protein; shikimate/quinate 5-dehydrogenase 4427687 5314397 Amet_4316 Alkaliphilus metalliredigens QYMF shikimate/quinate 5-dehydrogenase YP_001322049.1 4426596 R 293826 CDS YP_001322050.1 150392001 5314398 complement(4427690..4429111) 1 NC_009633.1 PFAM: aminotransferase class-III; KEGG: tte:TTE2339 PLP-dependent aminotransferases; class III aminotransferase 4429111 5314398 Amet_4317 Alkaliphilus metalliredigens QYMF class III aminotransferase YP_001322050.1 4427690 R 293826 CDS YP_001322051.1 150392002 5314440 4443806..4444624 1 NC_009633.1 PFAM: Ion transport 2 domain protein; Ion transport 2 domain-containing protein 4444624 5314440 Amet_4318 Alkaliphilus metalliredigens QYMF Ion transport 2 domain-containing protein YP_001322051.1 4443806 D 293826 CDS YP_001322052.1 150392003 5314479 complement(4459015..4459359) 1 NC_009633.1 hypothetical protein 4459359 5314479 Amet_4319 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322052.1 4459015 R 293826 CDS YP_001322053.1 150392004 5314480 complement(4459376..4460683) 1 NC_009633.1 PFAM: protein of unknown function DUF1576; KEGG: ctc:CTC00068 hypothetical protein; hypothetical protein 4460683 5314480 Amet_4320 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322053.1 4459376 R 293826 CDS YP_001322054.1 150392005 5314481 4460888..4461523 1 NC_009633.1 TIGRFAM: Sporulation protein YtaF; KEGG: bat:BAS4480 hypothetical protein; sporulation protein YtaF 4461523 5314481 Amet_4321 Alkaliphilus metalliredigens QYMF sporulation protein YtaF YP_001322054.1 4460888 D 293826 CDS YP_001322055.1 150392006 5314482 4461663..4462028 1 NC_009633.1 KEGG: mva:Mvan_2424 protein of unknown function DUF1622; hypothetical protein 4462028 5314482 Amet_4322 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322055.1 4461663 D 293826 CDS YP_001322056.1 150392007 5314483 complement(4462155..4463747) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: bsu:BG13309 two-component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 4463747 5314483 Amet_4323 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001322056.1 4462155 R 293826 CDS YP_001322057.1 150392008 5314484 4464125..4464688 1 NC_009633.1 KEGG: ctc:CTC01689 hypothetical protein; hypothetical protein 4464688 5314484 Amet_4324 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322057.1 4464125 D 293826 CDS YP_001322058.1 150392009 5314485 4464804..4465403 1 NC_009633.1 PFAM: NADPH-dependent FMN reductase; KEGG: deh:cbdb_A1323 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 4465403 5314485 Amet_4325 Alkaliphilus metalliredigens QYMF NADPH-dependent FMN reductase YP_001322058.1 4464804 D 293826 CDS YP_001322059.1 150392010 5314486 complement(4465453..4465683) 1 NC_009633.1 PFAM: glutaredoxin; glutaredoxin 2; KEGG: cth:Cthe_0235 glutaredoxin-like protein, YruB-family; glutaredoxin 4465683 5314486 Amet_4326 Alkaliphilus metalliredigens QYMF glutaredoxin YP_001322059.1 4465453 R 293826 CDS YP_001322060.1 150392011 5314487 complement(4465741..4466799) 1 NC_009633.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: sth:STH1727 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase 4466799 5314487 Amet_4327 Alkaliphilus metalliredigens QYMF A/G-specific adenine glycosylase YP_001322060.1 4465741 R 293826 CDS YP_001322061.1 150392012 5314488 complement(4467048..4467587) 1 NC_009633.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sth:STH926 2-cys peroxiredoxin; alkyl hydroperoxide reductase 4467587 5314488 Amet_4328 Alkaliphilus metalliredigens QYMF alkyl hydroperoxide reductase YP_001322061.1 4467048 R 293826 CDS YP_001322062.1 150392013 5314489 4467843..4468157 1 NC_009633.1 PFAM: protein of unknown function UPF0016; KEGG: pmn:PMN2A_0359 hypothetical protein; hypothetical protein 4468157 5314489 Amet_4329 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322062.1 4467843 D 293826 CDS YP_001322063.1 150392014 5314490 4468300..4468554 1 NC_009633.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: cps:CPS_4389 glutaredoxin; glutaredoxin 3 4468554 5314490 Amet_4330 Alkaliphilus metalliredigens QYMF glutaredoxin 3 YP_001322063.1 4468300 D 293826 CDS YP_001322064.1 150392015 5314491 4468583..4468966 1 NC_009633.1 PFAM: protein of unknown function DUF1312; KEGG: cth:Cthe_0562 protein of unknown function DUF1312; hypothetical protein 4468966 5314491 Amet_4331 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322064.1 4468583 D 293826 CDS YP_001322065.1 150392016 5314492 4468966..4469505 1 NC_009633.1 PFAM: Heptaprenyl diphosphate synthase component I; KEGG: cth:Cthe_0563 heptaprenyl diphosphate synthase component I; heptaprenyl diphosphate synthase component I 4469505 5314492 Amet_4332 Alkaliphilus metalliredigens QYMF heptaprenyl diphosphate synthase component I YP_001322065.1 4468966 D 293826 CDS YP_001322066.1 150392017 5314493 complement(4469548..4469928) 1 NC_009633.1 KEGG: swo:Swol_0320 hypothetical protein; hypothetical protein 4469928 5314493 Amet_4333 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322066.1 4469548 R 293826 CDS YP_001322067.1 150392018 5314494 complement(4469961..4470635) 1 NC_009633.1 PFAM: protein of unknown function DUF421; KEGG: swo:Swol_0321 hypothetical protein; hypothetical protein 4470635 5314494 Amet_4334 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322067.1 4469961 R 293826 CDS YP_001322068.1 150392019 5314495 4470784..4471806 1 NC_009633.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: gka:GK2332 NADH-dependent flavin oxidoreductase; NADH:flavin oxidoreductase 4471806 5314495 Amet_4335 Alkaliphilus metalliredigens QYMF NADH:flavin oxidoreductase YP_001322068.1 4470784 D 293826 CDS YP_001322069.1 150392020 5314496 complement(4471886..4473085) 1 NC_009633.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tte:TTE0596 metal-dependent amidase/aminoacylase/carboxypeptidase; amidohydrolase 4473085 5314496 Amet_4336 Alkaliphilus metalliredigens QYMF amidohydrolase YP_001322069.1 4471886 R 293826 CDS YP_001322070.1 150392021 5314497 complement(4473138..4474439) 1 NC_009633.1 TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: chy:CHY_1951 diaminopimelate decarboxylase; diaminopimelate decarboxylase 4474439 5314497 Amet_4337 Alkaliphilus metalliredigens QYMF diaminopimelate decarboxylase YP_001322070.1 4473138 R 293826 CDS YP_001322071.1 150392022 5314498 complement(4474649..4476142) 1 NC_009633.1 TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: bha:BH3316 succinate-semialdehyde dehydrogenase; succinate-semialdehyde dehydrogenase 4476142 5314498 Amet_4338 Alkaliphilus metalliredigens QYMF succinate-semialdehyde dehydrogenase YP_001322071.1 4474649 R 293826 CDS YP_001322072.1 150392023 5314499 4476330..4477157 1 NC_009633.1 TIGRFAM: putative undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; KEGG: chy:CHY_1158 putative undecaprenol kinase; putative undecaprenol kinase 4477157 5314499 Amet_4339 Alkaliphilus metalliredigens QYMF putative undecaprenol kinase YP_001322072.1 4476330 D 293826 CDS YP_001322073.1 150392024 5314500 complement(join(4477448..4477900,4477902..4478447)) 1 NC_009633.1 PFAM: phage integrase domain protein SAM domain protein; KEGG: dsy:DSY2171 hypothetical protein; phage integrase domain/SAM domain-containing protein 4478447 5314500 Amet_4340 Alkaliphilus metalliredigens QYMF phage integrase domain/SAM domain-containing protein YP_001322073.1 4477448 R 293826 CDS YP_001322074.1 150392025 5314501 complement(4478897..4479031) 1 NC_009633.1 hypothetical protein 4479031 5314501 Amet_4341 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322074.1 4478897 R 293826 CDS YP_001322075.1 150392026 5314502 complement(4479024..4479272) 1 NC_009633.1 hypothetical protein 4479272 5314502 Amet_4342 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322075.1 4479024 R 293826 CDS YP_001322076.1 150392027 5314503 complement(4479274..4479843) 1 NC_009633.1 KEGG: lin:lin1708 hypothetical protein; hypothetical protein 4479843 5314503 Amet_4343 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322076.1 4479274 R 293826 CDS YP_001322077.1 150392028 5314504 complement(4479854..4480483) 1 NC_009633.1 KEGG: lin:lin1709 hypothetical protein; hypothetical protein 4480483 5314504 Amet_4344 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322077.1 4479854 R 293826 CDS YP_001322078.1 150392029 5314505 complement(4480476..4481663) 1 NC_009633.1 KEGG: efa:EF1479 hypothetical protein; hypothetical protein 4481663 5314505 Amet_4345 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322078.1 4480476 R 293826 CDS YP_001322079.1 150392030 5314506 complement(4481656..4482018) 1 NC_009633.1 KEGG: efa:EF1478 hypothetical protein; hypothetical protein 4482018 5314506 Amet_4346 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322079.1 4481656 R 293826 CDS YP_001322080.1 150392031 5314507 complement(4482018..4482314) 1 NC_009633.1 hypothetical protein 4482314 5314507 Amet_4347 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322080.1 4482018 R 293826 CDS YP_001322081.1 150392032 5314508 complement(4482311..4483087) 1 NC_009633.1 KEGG: lin:lin1713 hypothetical protein; hypothetical protein 4483087 5314508 Amet_4348 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322081.1 4482311 R 293826 CDS YP_001322082.1 150392033 5314509 complement(4483074..4483403) 1 NC_009633.1 KEGG: efa:EF1475 hypothetical protein; hypothetical protein 4483403 5314509 Amet_4349 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322082.1 4483074 R 293826 CDS YP_001322083.1 150392034 5314510 complement(4483400..4483990) 1 NC_009633.1 KEGG: lin:lin1715 hypothetical protein; hypothetical protein 4483990 5314510 Amet_4350 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322083.1 4483400 R 293826 CDS YP_001322084.1 150392035 5314511 complement(4484003..4485760) 1 NC_009633.1 TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: bld:BLi01480 hypothetical protein; TP901 family phage tail tape measure protein 4485760 5314511 Amet_4351 Alkaliphilus metalliredigens QYMF TP901 family phage tail tape measure protein YP_001322084.1 4484003 R 293826 CDS YP_001322085.1 150392036 5314512 complement(4485869..4486192) 1 NC_009633.1 hypothetical protein 4486192 5314512 Amet_4352 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322085.1 4485869 R 293826 CDS YP_001322086.1 150392037 5314513 complement(4486253..4486507) 1 NC_009633.1 hypothetical protein 4486507 5314513 Amet_4353 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322086.1 4486253 R 293826 CDS YP_001322087.1 150392038 5314514 complement(4486563..4486967) 1 NC_009633.1 KEGG: lin:lin1719 hypothetical protein; hypothetical protein 4486967 5314514 Amet_4354 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322087.1 4486563 R 293826 CDS YP_001322088.1 150392039 5314515 complement(4486979..4487983) 1 NC_009633.1 KEGG: efa:EF1469 hypothetical protein; hypothetical protein 4487983 5314515 Amet_4355 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322088.1 4486979 R 293826 CDS YP_001322089.1 150392040 5314516 complement(4487995..4488501) 1 NC_009633.1 hypothetical protein 4488501 5314516 Amet_4356 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322089.1 4487995 R 293826 CDS YP_001322090.1 150392041 5314517 complement(4488498..4488860) 1 NC_009633.1 hypothetical protein 4488860 5314517 Amet_4357 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322090.1 4488498 R 293826 CDS YP_001322091.1 150392042 5314518 complement(4488857..4489459) 1 NC_009633.1 KEGG: lin:lin1723 hypothetical protein; hypothetical protein 4489459 5314518 Amet_4358 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322091.1 4488857 R 293826 CDS YP_001322092.1 150392043 5314519 complement(4489472..4489804) 1 NC_009633.1 KEGG: lin:lin1724 hypothetical protein; hypothetical protein 4489804 5314519 Amet_4359 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322092.1 4489472 R 293826 CDS YP_001322093.1 150392044 5314520 complement(4489807..4490139) 1 NC_009633.1 hypothetical protein 4490139 5314520 Amet_4360 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322093.1 4489807 R 293826 CDS YP_001322094.1 150392045 5314521 complement(4490155..4491069) 1 NC_009633.1 KEGG: lin:lin1726 hypothetical protein; hypothetical protein 4491069 5314521 Amet_4361 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322094.1 4490155 R 293826 CDS YP_001322095.1 150392046 5314522 complement(4491092..4491592) 1 NC_009633.1 KEGG: efa:EF1462 hypothetical protein; hypothetical protein 4491592 5314522 Amet_4362 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322095.1 4491092 R 293826 CDS YP_001322096.1 150392047 5314523 complement(4491608..4492711) 1 NC_009633.1 KEGG: lin:lin1728 hypothetical protein; hypothetical protein 4492711 5314523 Amet_4363 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322096.1 4491608 R 293826 CDS YP_001322097.1 150392048 5314524 complement(4492725..4493507) 1 NC_009633.1 TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family; PFAM: phage putative head morphogenesis protein, SPP1 gp7; KEGG: efa:EF1457 minor head protein; SPP1 family phage head morphogenesis protein 4493507 5314524 Amet_4364 Alkaliphilus metalliredigens QYMF SPP1 family phage head morphogenesis protein YP_001322097.1 4492725 R 293826 CDS YP_001322098.1 150392049 5314525 complement(4493500..4494849) 1 NC_009633.1 TIGRFAM: phage-associated protein, HI1409 family; KEGG: efa:EF1456 conserved hypothetical protein TIGR01555; phage-associated protein 4494849 5314525 Amet_4365 Alkaliphilus metalliredigens QYMF phage-associated protein YP_001322098.1 4493500 R 293826 CDS YP_001322099.1 150392050 5314526 complement(4494867..4496324) 1 NC_009633.1 TIGRFAM: phage uncharacterized protein; KEGG: bha:BH3533 hypothetical protein; phage protein 4496324 5314526 Amet_4366 Alkaliphilus metalliredigens QYMF phage protein YP_001322099.1 4494867 R 293826 CDS YP_001322100.1 150392051 5314527 complement(4496581..4497069) 1 NC_009633.1 PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; KEGG: tte:TTE0730 Transcription antiterminator; NusG antitermination factor 4497069 5314527 Amet_4367 Alkaliphilus metalliredigens QYMF NusG antitermination factor YP_001322100.1 4496581 R 293826 CDS YP_001322101.1 150392052 5314528 complement(4497083..4497256) 1 NC_009633.1 hypothetical protein 4497256 5314528 Amet_4368 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322101.1 4497083 R 293826 CDS YP_001322102.1 150392053 5314529 complement(4497231..4497650) 1 NC_009633.1 KEGG: mfa:Mfla_2702 hypothetical protein; hypothetical protein 4497650 5314529 Amet_4369 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322102.1 4497231 R 293826 CDS YP_001322103.1 150392054 5314530 complement(4497650..4497943) 1 NC_009633.1 hypothetical protein 4497943 5314530 Amet_4370 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322103.1 4497650 R 293826 CDS YP_001322104.1 150392055 5314531 complement(4497945..4498238) 1 NC_009633.1 hypothetical protein 4498238 5314531 Amet_4371 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322104.1 4497945 R 293826 CDS YP_001322105.1 150392056 5314532 complement(4498240..4498779) 1 NC_009633.1 hypothetical protein 4498779 5314532 Amet_4372 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322105.1 4498240 R 293826 CDS YP_001322106.1 150392057 5314533 complement(4498890..4499204) 1 NC_009633.1 hypothetical protein 4499204 5314533 Amet_4373 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322106.1 4498890 R 293826 CDS YP_001322107.1 150392058 5314534 complement(4499258..4499935) 1 NC_009633.1 PFAM: cell wall hydrolase/autolysin; KEGG: bld:BLi01974 N-acetylmuramoyl-L-alanine amidase cwlL precursor (Cell wall hydrolase) (Autolysin); RBL04154; cell wall hydrolase/autolysin 4499935 5314534 Amet_4374 Alkaliphilus metalliredigens QYMF cell wall hydrolase/autolysin YP_001322107.1 4499258 R 293826 CDS YP_001322108.1 150392059 5314535 complement(4500055..4500765) 1 NC_009633.1 KEGG: ssa:SSA_0424 exopolysaccharide biosynthesis protein, putative; related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like protein; exopolysaccharide biosynthesis protein 4500765 5314535 Amet_4375 Alkaliphilus metalliredigens QYMF exopolysaccharide biosynthesis protein YP_001322108.1 4500055 R 293826 CDS YP_001322109.1 150392060 5314536 complement(4500795..4501271) 1 NC_009633.1 PFAM: 3D domain protein; KEGG: bsu:BG13521 similar to cell wall-binding protein; hypothetical protein 4501271 5314536 Amet_4376 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322109.1 4500795 R 293826 CDS YP_001322110.1 150392061 5314537 complement(4501314..4501493) 1 NC_009633.1 hypothetical protein 4501493 5314537 Amet_4377 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322110.1 4501314 R 293826 CDS YP_001322111.1 150392062 5314538 complement(4501512..4501748) 1 NC_009633.1 hypothetical protein 4501748 5314538 Amet_4378 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322111.1 4501512 R 293826 CDS YP_001322112.1 150392063 5314539 complement(4501749..4501874) 1 NC_009633.1 hypothetical protein 4501874 5314539 Amet_4379 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322112.1 4501749 R 293826 CDS YP_001322113.1 150392064 5314540 complement(4501900..4502121) 1 NC_009633.1 hypothetical protein 4502121 5314540 Amet_4380 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322113.1 4501900 R 293826 CDS YP_001322114.1 150392065 5314541 complement(4502152..4502490) 1 NC_009633.1 hypothetical protein 4502490 5314541 Amet_4381 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322114.1 4502152 R 293826 CDS YP_001322115.1 150392066 5314542 complement(4502534..4502845) 1 NC_009633.1 hypothetical protein 4502845 5314542 Amet_4382 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322115.1 4502534 R 293826 CDS YP_001322116.1 150392067 5314543 complement(4503139..4503540) 1 NC_009633.1 KEGG: pol:Bpro_3769 hypothetical protein; hypothetical protein 4503540 5314543 Amet_4383 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322116.1 4503139 R 293826 CDS YP_001322117.1 150392068 5314544 complement(4503547..4504194) 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; KEGG: cpr:CPR_1733 RNA polymerase sigma-E factor; FliA/WhiG family RNA polymerase sigma factor 4504194 5314544 Amet_4384 Alkaliphilus metalliredigens QYMF FliA/WhiG family RNA polymerase sigma factor YP_001322117.1 4503547 R 293826 CDS YP_001322118.1 150392069 5314545 complement(4504208..4504369) 1 NC_009633.1 hypothetical protein 4504369 5314545 Amet_4385 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322118.1 4504208 R 293826 CDS YP_001322119.1 150392070 5314546 complement(4504440..4504673) 1 NC_009633.1 hypothetical protein 4504673 5314546 Amet_4386 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322119.1 4504440 R 293826 CDS YP_001322120.1 150392071 5314547 complement(4504657..4505085) 1 NC_009633.1 hypothetical protein 4505085 5314547 Amet_4387 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322120.1 4504657 R 293826 CDS YP_001322121.1 150392072 5314548 complement(4505135..4505788) 1 NC_009633.1 hypothetical protein 4505788 5314548 Amet_4388 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322121.1 4505135 R 293826 CDS YP_001322122.1 150392073 5314549 complement(4505781..4506038) 1 NC_009633.1 PFAM: SpoVT/AbrB domain protein; KEGG: swo:Swol_0047 transcription regulator AbrB; transcriptional regulator/antitoxin MazE 4506038 5314549 Amet_4389 Alkaliphilus metalliredigens QYMF transcriptional regulator/antitoxin MazE YP_001322122.1 4505781 R 293826 CDS YP_001322123.1 150392074 5314550 complement(4506022..4506777) 1 NC_009633.1 hypothetical protein 4506777 5314550 Amet_4390 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322123.1 4506022 R 293826 CDS YP_001322124.1 150392075 5314551 complement(4506755..4506982) 1 NC_009633.1 hypothetical protein 4506982 5314551 Amet_4391 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322124.1 4506755 R 293826 CDS YP_001322125.1 150392076 5314552 complement(4506984..4507238) 1 NC_009633.1 hypothetical protein 4507238 5314552 Amet_4392 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322125.1 4506984 R 293826 CDS YP_001322126.1 150392077 5314553 complement(4507238..4508161) 1 NC_009633.1 KEGG: cjr:CJE0269 bacteriophage DNA transposition protein B, putative; hypothetical protein 4508161 5314553 Amet_4393 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322126.1 4507238 R 293826 CDS YP_001322127.1 150392078 5314555 complement(4510394..4510630) 1 NC_009633.1 KEGG: tte:TTE2173 hypothetical protein; hypothetical protein 4510630 5314555 Amet_4395 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322127.1 4510394 R 293826 CDS YP_001322128.1 150392079 5314556 complement(4510643..4511113) 1 NC_009633.1 hypothetical protein 4511113 5314556 Amet_4396 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322128.1 4510643 R 293826 CDS YP_001322129.1 150392080 5314557 complement(4511088..4511294) 1 NC_009633.1 hypothetical protein 4511294 5314557 Amet_4397 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322129.1 4511088 R 293826 CDS YP_001322130.1 150392081 5314558 complement(4511640..4511825) 1 NC_009633.1 hypothetical protein 4511825 5314558 Amet_4398 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322130.1 4511640 R 293826 CDS YP_001322131.1 150392082 5314559 complement(4511832..4511957) 1 NC_009633.1 hypothetical protein 4511957 5314559 Amet_4399 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322131.1 4511832 R 293826 CDS YP_001322132.1 150392083 5314560 4512127..4512891 1 NC_009633.1 PFAM: helix-turn-helix domain protein; bacteriophage CI repressor; KEGG: ecv:APECO1_376 putative repressor protein encoded within prophage CP-933O; XRE family plasmid maintenance system antidote protein 4512891 5314560 Amet_4400 Alkaliphilus metalliredigens QYMF XRE family plasmid maintenance system antidote protein YP_001322132.1 4512127 D 293826 CDS YP_001322133.1 150392084 5314561 complement(4513644..4515518) 1 NC_009633.1 PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase; transposase, IS4 family protein 4515518 5314561 Amet_4401 Alkaliphilus metalliredigens QYMF transposase, IS4 family protein YP_001322133.1 4513644 R 293826 CDS YP_001322134.1 150392085 5314562 complement(4515859..4516572) 1 NC_009633.1 PFAM: protein of unknown function DUF542, ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: cac:CAC0071 uncharacterized conserved protein, YtfE E.coli ortholog; hypothetical protein 4516572 5314562 Amet_4402 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322134.1 4515859 R 293826 CDS YP_001322135.1 150392086 5314563 complement(4516662..4517000) 1 NC_009633.1 PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: gka:GK2186 hypothetical protein; MazG nucleotide pyrophosphohydrolase 4517000 5314563 Amet_4403 Alkaliphilus metalliredigens QYMF MazG nucleotide pyrophosphohydrolase YP_001322135.1 4516662 R 293826 CDS YP_001322136.1 150392087 5314564 complement(4516997..4518184) 1 NC_009633.1 PFAM: sodium/hydrogen exchanger; KEGG: ctc:CTC02161 putative Na(+)/H(+) antiporter; sodium/hydrogen exchanger 4518184 5314564 Amet_4404 Alkaliphilus metalliredigens QYMF sodium/hydrogen exchanger YP_001322136.1 4516997 R 293826 CDS YP_001322137.1 150392088 5314565 complement(4518411..4520252) 1 NC_009633.1 TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; KEGG: cth:Cthe_0556 asparagine synthase (glutamine-hydrolyzing); asparagine synthase 4520252 5314565 Amet_4405 Alkaliphilus metalliredigens QYMF asparagine synthase YP_001322137.1 4518411 R 293826 CDS YP_001322138.1 150392089 5314566 complement(4520400..4521650) 1 NC_009633.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cpr:CPR_0036 transporter, putative; hypothetical protein 4521650 5314566 Amet_4406 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322138.1 4520400 R 293826 CDS YP_001322139.1 150392090 5314567 complement(4521725..4524097) 1 NC_009633.1 KEGG: cno:NT01CX_1207 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; multi-sensor signal transduction histidine kinase 4524097 5314567 Amet_4407 Alkaliphilus metalliredigens QYMF multi-sensor signal transduction histidine kinase YP_001322139.1 4521725 R 293826 CDS YP_001322140.1 150392091 5314568 complement(4524359..4525120) 1 NC_009633.1 PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: cac:CAC2416 uncharacterized protein, ErfK family; contains peptidoglycan-binding domain; ErfK/YbiS/YcfS/YnhG family protein 4525120 5314568 Amet_4408 Alkaliphilus metalliredigens QYMF ErfK/YbiS/YcfS/YnhG family protein YP_001322140.1 4524359 R 293826 CDS YP_001322141.1 150392092 5314569 complement(4525515..4525799) 1 NC_009633.1 hypothetical protein 4525799 5314569 Amet_4409 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322141.1 4525515 R 293826 CDS YP_001322142.1 150392093 5314570 4526177..4526698 1 NC_009633.1 KEGG: cac:CA_P0023 hypothetical protein; hypothetical protein 4526698 5314570 Amet_4410 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322142.1 4526177 D 293826 CDS YP_001322143.1 150392094 5314571 complement(4526948..4528831) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: cno:NT01CX_0224 sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4528831 5314571 Amet_4411 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001322143.1 4526948 R 293826 CDS YP_001322144.1 150392095 5314572 complement(4529429..4529938) 1 NC_009633.1 hypothetical protein 4529938 5314572 Amet_4412 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322144.1 4529429 R 293826 CDS YP_001322145.1 150392096 5314574 complement(4531294..4531515) 1 NC_009633.1 hypothetical protein 4531515 5314574 Amet_4414 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322145.1 4531294 R 293826 CDS YP_001322146.1 150392097 5314575 complement(4531776..4533218) 1 NC_009633.1 TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: ctc:CTC00235 potassium uptake protein trkH; TrkH family potassium uptake protein 4533218 5314575 Amet_4415 Alkaliphilus metalliredigens QYMF TrkH family potassium uptake protein YP_001322146.1 4531776 R 293826 CDS YP_001322147.1 150392098 5314576 complement(4533169..4534578) 1 NC_009633.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 4534578 trkA 5314576 trkA Alkaliphilus metalliredigens QYMF potassium transporter peripheral membrane protein YP_001322147.1 4533169 R 293826 CDS YP_001322148.1 150392099 5314577 complement(4534596..4535042) 1 NC_009633.1 hypothetical protein 4535042 5314577 Amet_4417 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322148.1 4534596 R 293826 CDS YP_001322149.1 150392100 5314578 4535170..4536168 1 NC_009633.1 hypothetical protein 4536168 5314578 Amet_4418 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322149.1 4535170 D 293826 CDS YP_001322150.1 150392101 5314579 complement(4536178..4536810) 1 NC_009633.1 PFAM: cyclase family protein; KEGG: tfu:Tfu_1722 conserved hypothetical protein; cyclase family protein 4536810 5314579 Amet_4419 Alkaliphilus metalliredigens QYMF cyclase family protein YP_001322150.1 4536178 R 293826 CDS YP_001322151.1 150392102 5314580 complement(4536803..4538755) 1 NC_009633.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, transmembrane region; KEGG: swo:Swol_1622 response regulator receiver protein; sensor diguanylate cyclase 4538755 5314580 Amet_4420 Alkaliphilus metalliredigens QYMF sensor diguanylate cyclase YP_001322151.1 4536803 R 293826 CDS YP_001322152.1 150392103 5314581 complement(4539115..4539909) 1 NC_009633.1 PFAM: Linocin_M18 bacteriocin protein; KEGG: tma:TM0785 bacteriocin; Linocin_M18 bacteriocin protein 4539909 5314581 Amet_4421 Alkaliphilus metalliredigens QYMF Linocin_M18 bacteriocin protein YP_001322152.1 4539115 R 293826 CDS YP_001322153.1 150392104 5314582 complement(4539923..4540285) 1 NC_009633.1 KEGG: tma:TM0786 hypothetical protein; hypothetical protein 4540285 5314582 Amet_4422 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322153.1 4539923 R 293826 CDS YP_001322154.1 150392105 5314583 complement(4540531..4541352) 1 NC_009633.1 PFAM: regulatory protein, MerR; transcription activator, effector binding; KEGG: bsu:BG12159 similar to multidrug-efflux transporter regulator; MerR family transcriptional regulator 4541352 5314583 Amet_4423 Alkaliphilus metalliredigens QYMF MerR family transcriptional regulator YP_001322154.1 4540531 R 293826 CDS YP_001322155.1 150392106 5314584 complement(4541488..4542384) 1 NC_009633.1 TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: ctc:CTC01763 arginase; arginase 4542384 5314584 Amet_4424 Alkaliphilus metalliredigens QYMF arginase YP_001322155.1 4541488 R 293826 CDS YP_001322156.1 150392107 5314585 complement(4542552..4543424) 1 NC_009633.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 4543424 5314585 Amet_4425 Alkaliphilus metalliredigens QYMF lipoyl synthase YP_001322156.1 4542552 R 293826 CDS YP_001322157.1 150392108 5314586 complement(4543470..4544198) 1 NC_009633.1 TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: aba:Acid345_4305 lipoate-protein ligase B; lipoate-protein ligase B 4544198 5314586 Amet_4426 Alkaliphilus metalliredigens QYMF lipoate-protein ligase B YP_001322157.1 4543470 R 293826 CDS YP_001322158.1 150392109 5314587 complement(4544341..4544880) 1 NC_009633.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dde:Dde_0046 pyruvate ferredoxin/flavodoxin oxidoreductase family protein; pyruvate ferredoxin/flavodoxin oxidoreductase 4544880 5314587 Amet_4427 Alkaliphilus metalliredigens QYMF pyruvate ferredoxin/flavodoxin oxidoreductase YP_001322158.1 4544341 R 293826 CDS YP_001322159.1 150392110 5314588 complement(4544877..4545629) 1 NC_009633.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: cth:Cthe_0865 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin); thiamine pyrophosphate binding domain-containing protein 4545629 5314588 Amet_4428 Alkaliphilus metalliredigens QYMF thiamine pyrophosphate binding domain-containing protein YP_001322159.1 4544877 R 293826 CDS YP_001322160.1 150392111 5314589 complement(4545633..4546703) 1 NC_009633.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cth:Cthe_0866 pyruvate flavodoxin/ferredoxin oxidoreductase-like protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 4546703 5314589 Amet_4429 Alkaliphilus metalliredigens QYMF pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_001322160.1 4545633 R 293826 CDS YP_001322161.1 150392112 5314590 complement(4546731..4546934) 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cth:Cthe_0867 4Fe-4S ferredoxin, iron-sulfur binding; 4Fe-4S ferredoxin 4546934 5314590 Amet_4430 Alkaliphilus metalliredigens QYMF 4Fe-4S ferredoxin YP_001322161.1 4546731 R 293826 CDS YP_001322162.1 150392113 5314591 complement(4546960..4548036) 1 NC_009633.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 4548036 5314591 Amet_4431 Alkaliphilus metalliredigens QYMF butyrate kinase YP_001322162.1 4546960 R 293826 CDS YP_001322163.1 150392114 5314592 4548271..4549188 1 NC_009633.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cac:CAC3409 transcriptional regulators, LysR family; LysR family transcriptional regulator 4549188 5314592 Amet_4432 Alkaliphilus metalliredigens QYMF LysR family transcriptional regulator YP_001322163.1 4548271 D 293826 CDS YP_001322164.1 150392115 5314593 complement(4549290..4551644) 1 NC_009633.1 KEGG: cno:NT01CX_1207 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor signal transduction histidine kinase 4551644 5314593 Amet_4433 Alkaliphilus metalliredigens QYMF PAS/PAC sensor signal transduction histidine kinase YP_001322164.1 4549290 R 293826 CDS YP_001322165.1 150392116 5314594 complement(4551988..4552584) 1 NC_009633.1 KEGG: bld:BLi02966 hypothetical protein; hypothetical protein 4552584 5314594 Amet_4434 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322165.1 4551988 R 293826 CDS YP_001322166.1 150392117 5314595 complement(4552767..4553267) 1 NC_009633.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 4553267 5314595 Amet_4435 Alkaliphilus metalliredigens QYMF 7-cyano-7-deazaguanine reductase YP_001322166.1 4552767 R 293826 CDS YP_001322167.1 150392118 5314596 complement(4553379..4553936) 1 NC_009633.1 PFAM: protein of unknown function DUF988; KEGG: stl:stu1551 conserved hypothetical, predicted membrane protein (TMS5); hypothetical protein 4553936 5314596 Amet_4436 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322167.1 4553379 R 293826 CDS YP_001322168.1 150392119 5314597 complement(4554345..4554905) 1 NC_009633.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_1771 rubrerythrin; rubrerythrin 4554905 5314597 Amet_4437 Alkaliphilus metalliredigens QYMF rubrerythrin YP_001322168.1 4554345 R 293826 CDS YP_001322169.1 150392120 5314598 complement(4555224..4556084) 1 NC_009633.1 PFAM: protein of unknown function DUF610, YibQ; KEGG: btk:BT9727_1223 conserved hypothetical protein, possible divergent polysaccharide deacetylase; hypothetical protein 4556084 5314598 Amet_4438 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322169.1 4555224 R 293826 CDS YP_001322170.1 150392121 5314599 4556199..4556582 1 NC_009633.1 KEGG: cno:NT01CX_2050 hypothetical protein; hypothetical protein 4556582 5314599 Amet_4439 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322170.1 4556199 D 293826 CDS YP_001322171.1 150392122 5314600 complement(4556769..4557479) 1 NC_009633.1 TIGRFAM: N-acetylmuramoyl-L-alanine amidase CwlD; PFAM: cell wall hydrolase/autolysin; KEGG: tte:TTE2217 N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase CwlD 4557479 5314600 Amet_4440 Alkaliphilus metalliredigens QYMF N-acetylmuramoyl-L-alanine amidase CwlD YP_001322171.1 4556769 R 293826 CDS YP_001322172.1 150392123 5314601 4557752..4558027 1 NC_009633.1 hypothetical protein 4558027 5314601 Amet_4441 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322172.1 4557752 D 293826 CDS YP_001322173.1 150392124 5314602 complement(4558100..4558492) 1 NC_009633.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 4558492 rpsI 5314602 rpsI Alkaliphilus metalliredigens QYMF 30S ribosomal protein S9 YP_001322173.1 4558100 R 293826 CDS YP_001322174.1 150392125 5314603 complement(4558525..4558953) 1 NC_009633.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 4558953 rplM 5314603 rplM Alkaliphilus metalliredigens QYMF 50S ribosomal protein L13 YP_001322174.1 4558525 R 293826 CDS YP_001322175.1 150392126 5314604 complement(4559073..4559840) 1 NC_009633.1 TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; KEGG: cth:Cthe_2939 tRNA pseudouridine synthase A; tRNA pseudouridine synthase A 4559840 5314604 Amet_4444 Alkaliphilus metalliredigens QYMF tRNA pseudouridine synthase A YP_001322175.1 4559073 R 293826 CDS YP_001322176.1 150392127 5314605 complement(4559854..4560651) 1 NC_009633.1 PFAM: cobalt transport protein; KEGG: cpf:CPF_2681 cobalt ABC transporter, permease protein; cobalt transport protein 4560651 5314605 Amet_4445 Alkaliphilus metalliredigens QYMF cobalt transport protein YP_001322176.1 4559854 R 293826 CDS YP_001322177.1 150392128 5314606 complement(4560644..4561507) 1 NC_009633.1 with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 4561507 cbiO 5314606 cbiO Alkaliphilus metalliredigens QYMF cobalt transporter ATP-binding subunit YP_001322177.1 4560644 R 293826 CDS YP_001322178.1 150392129 5314607 complement(4561483..4562331) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1146 ABC transporter, ATP-binding protein; ABC transporter-like protein 4562331 5314607 Amet_4447 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001322178.1 4561483 R 293826 CDS YP_001322179.1 150392130 5314608 complement(4562501..4562842) 1 NC_009633.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 4562842 rplQ 5314608 rplQ Alkaliphilus metalliredigens QYMF 50S ribosomal protein L17 YP_001322179.1 4562501 R 293826 CDS YP_001322180.1 150392131 5314609 complement(4562865..4563812) 1 NC_009633.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 4563812 5314609 Amet_4449 Alkaliphilus metalliredigens QYMF DNA-directed RNA polymerase subunit alpha YP_001322180.1 4562865 R 293826 CDS YP_001322181.1 150392132 5314610 complement(4563877..4564500) 1 NC_009633.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 4564500 rpsD 5314610 rpsD Alkaliphilus metalliredigens QYMF 30S ribosomal protein S4 YP_001322181.1 4563877 R 293826 CDS YP_001322182.1 150392133 5314611 complement(4564523..4564921) 1 NC_009633.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 4564921 5314611 Amet_4451 Alkaliphilus metalliredigens QYMF 30S ribosomal protein S11 YP_001322182.1 4564523 R 293826 CDS YP_001322183.1 150392134 5314612 complement(4564944..4565315) 1 NC_009633.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 4565315 rpsM 5314612 rpsM Alkaliphilus metalliredigens QYMF 30S ribosomal protein S13 YP_001322183.1 4564944 R 293826 CDS YP_001322184.1 150392135 5314613 complement(4565524..4565637) 1 NC_009633.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 4565637 rpmJ 5314613 rpmJ Alkaliphilus metalliredigens QYMF 50S ribosomal protein L36 YP_001322184.1 4565524 R 293826 CDS YP_001322185.1 150392136 5314614 complement(4565661..4565879) 1 NC_009633.1 TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1, IF1 family protein; KEGG: cth:Cthe_2927 translation initiation factor IF-1; translation initiation factor IF-1 4565879 5314614 Amet_4454 Alkaliphilus metalliredigens QYMF translation initiation factor IF-1 YP_001322185.1 4565661 R 293826 CDS YP_001322186.1 150392137 5314615 complement(4565909..4566193) 1 NC_009633.1 KEGG: tte:TTE2269 hypothetical protein; hypothetical protein 4566193 5314615 Amet_4455 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322186.1 4565909 R 293826 CDS YP_001322187.1 150392138 5314616 complement(4566216..4566962) 1 NC_009633.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: tte:TTE2270 methionine aminopeptidase; methionine aminopeptidase 4566962 5314616 Amet_4456 Alkaliphilus metalliredigens QYMF methionine aminopeptidase YP_001322187.1 4566216 R 293826 CDS YP_001322188.1 150392139 5314617 complement(4566965..4567612) 1 NC_009633.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 4567612 adk 5314617 adk Alkaliphilus metalliredigens QYMF adenylate kinase YP_001322188.1 4566965 R 293826 CDS YP_001322189.1 150392140 5314618 complement(4567668..4568939) 1 NC_009633.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: tte:TTE2272 preprotein translocase subunit SecY; preprotein translocase subunit SecY 4568939 5314618 Amet_4458 Alkaliphilus metalliredigens QYMF preprotein translocase subunit SecY YP_001322189.1 4567668 R 293826 CDS YP_001322190.1 150392141 5314619 complement(4568941..4569384) 1 NC_009633.1 late assembly protein; 50S ribosomal protein L15 4569384 rplO 5314619 rplO Alkaliphilus metalliredigens QYMF 50S ribosomal protein L15 YP_001322190.1 4568941 R 293826 CDS YP_001322191.1 150392142 5314620 complement(4569404..4569583) 1 NC_009633.1 PFAM: ribosomal protein L30; KEGG: abo:ABO_0415 50S ribosomal protein L30; 50S ribosomal protein L30 4569583 5314620 Amet_4460 Alkaliphilus metalliredigens QYMF 50S ribosomal protein L30 YP_001322191.1 4569404 R 293826 CDS YP_001322192.1 150392143 5314621 complement(4569597..4570106) 1 NC_009633.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 4570106 rpsE 5314621 rpsE Alkaliphilus metalliredigens QYMF 30S ribosomal protein S5 YP_001322192.1 4569597 R 293826 CDS YP_001322193.1 150392144 5314622 complement(4570134..4570502) 1 NC_009633.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 4570502 rplR 5314622 rplR Alkaliphilus metalliredigens QYMF 50S ribosomal protein L18 YP_001322193.1 4570134 R 293826 CDS YP_001322194.1 150392145 5314623 complement(4570522..4571061) 1 NC_009633.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 4571061 rplF 5314623 rplF Alkaliphilus metalliredigens QYMF 50S ribosomal protein L6 YP_001322194.1 4570522 R 293826 CDS YP_001322195.1 150392146 5314624 complement(4571091..4571489) 1 NC_009633.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 4571489 rpsH 5314624 rpsH Alkaliphilus metalliredigens QYMF 30S ribosomal protein S8 YP_001322195.1 4571091 R 293826 CDS YP_001322196.1 150392147 5314625 complement(4571513..4571698) 1 NC_009633.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 4571698 rpsN 5314625 rpsN Alkaliphilus metalliredigens QYMF 30S ribosomal protein S14 YP_001322196.1 4571513 R 293826 CDS YP_001322197.1 150392148 5314626 complement(4571718..4572257) 1 NC_009633.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 4572257 rplE 5314626 rplE Alkaliphilus metalliredigens QYMF 50S ribosomal protein L5 YP_001322197.1 4571718 R 293826 CDS YP_001322198.1 150392149 5314627 complement(4572291..4572602) 1 NC_009633.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 4572602 rplX 5314627 rplX Alkaliphilus metalliredigens QYMF 50S ribosomal protein L24 YP_001322198.1 4572291 R 293826 CDS YP_001322199.1 150392150 5314628 complement(4572620..4572988) 1 NC_009633.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 4572988 rplN 5314628 rplN Alkaliphilus metalliredigens QYMF 50S ribosomal protein L14 YP_001322199.1 4572620 R 293826 CDS YP_001322200.1 150392151 5314629 complement(4573016..4573270) 1 NC_009633.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 4573270 rpsQ 5314629 rpsQ Alkaliphilus metalliredigens QYMF 30S ribosomal protein S17 YP_001322200.1 4573016 R 293826 CDS YP_001322201.1 150392152 5314630 complement(4573303..4573506) 1 NC_009633.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 4573506 5314630 Amet_4470 Alkaliphilus metalliredigens QYMF 50S ribosomal protein L29 YP_001322201.1 4573303 R 293826 CDS YP_001322202.1 150392153 5314631 complement(4573496..4573939) 1 NC_009633.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 4573939 rplP 5314631 rplP Alkaliphilus metalliredigens QYMF 50S ribosomal protein L16 YP_001322202.1 4573496 R 293826 CDS YP_001322203.1 150392154 5314632 complement(4573972..4574676) 1 NC_009633.1 TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3-C-terminal domain protein; KH, type 2 domain protein; Ribosomal protein S3, N-terminal domain; SMART: KH domain protein; KEGG: cth:Cthe_2909 ribosomal protein S3; 30S ribosomal protein S3 4574676 5314632 Amet_4472 Alkaliphilus metalliredigens QYMF 30S ribosomal protein S3 YP_001322203.1 4573972 R 293826 CDS YP_001322204.1 150392155 5314633 complement(4574696..4575028) 1 NC_009633.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 4575028 rplV 5314633 rplV Alkaliphilus metalliredigens QYMF 50S ribosomal protein L22 YP_001322204.1 4574696 R 293826 CDS YP_001322205.1 150392156 5314634 complement(4575059..4575340) 1 NC_009633.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 4575340 rpsS 5314634 rpsS Alkaliphilus metalliredigens QYMF 30S ribosomal protein S19 YP_001322205.1 4575059 R 293826 CDS YP_001322206.1 150392157 5314635 complement(4575383..4576213) 1 NC_009633.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 4576213 rplB 5314635 rplB Alkaliphilus metalliredigens QYMF 50S ribosomal protein L2 YP_001322206.1 4575383 R 293826 CDS YP_001322207.1 150392158 5314636 complement(4576247..4576537) 1 NC_009633.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 4576537 rplW 5314636 rplW Alkaliphilus metalliredigens QYMF 50S ribosomal protein L23 YP_001322207.1 4576247 R 293826 CDS YP_001322208.1 150392159 5314637 complement(4576537..4577160) 1 NC_009633.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 4577160 rplD 5314637 rplD Alkaliphilus metalliredigens QYMF 50S ribosomal protein L4 YP_001322208.1 4576537 R 293826 CDS YP_001322209.1 150392160 5314638 complement(4577187..4577819) 1 NC_009633.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 4577819 rplC 5314638 rplC Alkaliphilus metalliredigens QYMF 50S ribosomal protein L3 YP_001322209.1 4577187 R 293826 CDS YP_001322210.1 150392161 5314639 complement(4577923..4578237) 1 NC_009633.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 4578237 rpsJ 5314639 rpsJ Alkaliphilus metalliredigens QYMF 30S ribosomal protein S10 YP_001322210.1 4577923 R 293826 CDS YP_001322211.1 150392162 5314640 complement(4578581..4579774) 1 NC_009633.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4579774 5314640 Amet_4480 Alkaliphilus metalliredigens QYMF elongation factor Tu YP_001322211.1 4578581 R 293826 CDS YP_001322212.1 150392163 5314641 complement(4579900..4581969) 1 NC_009633.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 4581969 5314641 Amet_4481 Alkaliphilus metalliredigens QYMF elongation factor G YP_001322212.1 4579900 R 293826 CDS YP_001322213.1 150392164 5314642 complement(4582072..4582542) 1 NC_009633.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 4582542 5314642 Amet_4482 Alkaliphilus metalliredigens QYMF 30S ribosomal protein S7 YP_001322213.1 4582072 R 293826 CDS YP_001322214.1 150392165 5314643 complement(4582697..4583116) 1 NC_009633.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 4583116 rpsL 5314643 rpsL Alkaliphilus metalliredigens QYMF 30S ribosomal protein S12 YP_001322214.1 4582697 R 293826 CDS YP_001322215.1 150392166 5314644 complement(4583234..4583476) 1 NC_009633.1 KEGG: mta:Moth_2466 ribosomal protein L7Ae/L30e/S12e/Gadd45; 50S ribosomal protein L7Ae/L30e/S12e/Gadd45 4583476 5314644 Amet_4484 Alkaliphilus metalliredigens QYMF 50S ribosomal protein L7Ae/L30e/S12e/Gadd45 YP_001322215.1 4583234 R 293826 CDS YP_001322216.1 150392167 5314645 complement(4583610..4587125) 1 NC_009633.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 4587125 5314645 Amet_4485 Alkaliphilus metalliredigens QYMF DNA-directed RNA polymerase subunit beta' YP_001322216.1 4583610 R 293826 CDS YP_001322217.1 150392168 5314646 complement(4587177..4590917) 1 NC_009633.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 4590917 rpoB 5314646 rpoB Alkaliphilus metalliredigens QYMF DNA-directed RNA polymerase subunit beta YP_001322217.1 4587177 R 293826 CDS YP_001322218.1 150392169 5314647 complement(4591366..4591728) 1 NC_009633.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 4591728 rplL 5314647 rplL Alkaliphilus metalliredigens QYMF 50S ribosomal protein L7/L12 YP_001322218.1 4591366 R 293826 CDS YP_001322219.1 150392170 5314648 complement(4591789..4592289) 1 NC_009633.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 4592289 rplJ 5314648 rplJ Alkaliphilus metalliredigens QYMF 50S ribosomal protein L10 YP_001322219.1 4591789 R 293826 CDS YP_001322220.1 150392171 5314649 complement(4592533..4593231) 1 NC_009633.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 4593231 rplA 5314649 rplA Alkaliphilus metalliredigens QYMF 50S ribosomal protein L1 YP_001322220.1 4592533 R 293826 CDS YP_001322221.1 150392172 5314650 complement(4593303..4593728) 1 NC_009633.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 4593728 rplK 5314650 rplK Alkaliphilus metalliredigens QYMF 50S ribosomal protein L11 YP_001322221.1 4593303 R 293826 CDS YP_001322222.1 150392173 5314651 complement(4593813..4594331) 1 NC_009633.1 TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein; KEGG: cth:Cthe_2719 NusG antitermination factor; NusG antitermination factor 4594331 5314651 Amet_4491 Alkaliphilus metalliredigens QYMF NusG antitermination factor YP_001322222.1 4593813 R 293826 CDS YP_001322223.1 150392174 5314652 complement(4594392..4594607) 1 NC_009633.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: dsy:DSY0453 hypothetical protein; preprotein translocase subunit SecE 4594607 5314652 Amet_4492 Alkaliphilus metalliredigens QYMF preprotein translocase subunit SecE YP_001322223.1 4594392 R 293826 CDS YP_001322224.1 150392175 5314653 complement(4594643..4594792) 1 NC_009633.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 4594792 rpmG 5314653 rpmG Alkaliphilus metalliredigens QYMF 50S ribosomal protein L33 YP_001322224.1 4594643 R 293826 CDS YP_001322225.1 150392176 5314654 complement(4594997..4596208) 1 NC_009633.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 4596208 5314654 Amet_4494 Alkaliphilus metalliredigens QYMF elongation factor Tu YP_001322225.1 4594997 R 293826 CDS YP_001322226.1 150392177 5314655 complement(4596420..4597061) 1 NC_009633.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 4597061 5314655 Amet_4495 Alkaliphilus metalliredigens QYMF RNA polymerase factor sigma-70 YP_001322226.1 4596420 R 293826 CDS YP_001322227.1 150392178 5314656 complement(4597145..4597654) 1 NC_009633.1 PFAM: protein of unknown function DUF901; KEGG: lmo:lmo0242 similar to B. subtilis Yacp protein; hypothetical protein 4597654 5314656 Amet_4496 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322227.1 4597145 R 293826 CDS YP_001322228.1 150392179 5314657 complement(4597670..4598416) 1 NC_009633.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: cth:Cthe_2060 RNA methyltransferase, TrmH family, group 3; RNA methyltransferase 4598416 5314657 Amet_4497 Alkaliphilus metalliredigens QYMF RNA methyltransferase YP_001322228.1 4597670 R 293826 CDS YP_001322229.1 150392180 5314658 complement(4598449..4599222) 1 NC_009633.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 4599222 thyX 5314658 thyX Alkaliphilus metalliredigens QYMF FAD-dependent thymidylate synthase YP_001322229.1 4598449 R 293826 CDS YP_001322230.1 150392181 5314659 complement(4599219..4599590) 1 NC_009633.1 hypothetical protein 4599590 5314659 Amet_4499 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322230.1 4599219 R 293826 CDS YP_001322231.1 150392182 5314660 complement(4599602..4600030) 1 NC_009633.1 PFAM: ribonuclease III; KEGG: cth:Cthe_2061 hypothetical protein; ribonuclease III 4600030 5314660 Amet_4500 Alkaliphilus metalliredigens QYMF ribonuclease III YP_001322231.1 4599602 R 293826 CDS YP_001322232.1 150392183 5314661 complement(4600172..4601566) 1 NC_009633.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 4601566 cysS 5314661 cysS Alkaliphilus metalliredigens QYMF cysteinyl-tRNA synthetase YP_001322232.1 4600172 R 293826 CDS YP_001322233.1 150392184 5314662 complement(4601553..4602227) 1 NC_009633.1 TIGRFAM: serine O-acetyltransferase; KEGG: tte:TTE2316 serine acetyltransferase; serine O-acetyltransferase 4602227 5314662 Amet_4502 Alkaliphilus metalliredigens QYMF serine O-acetyltransferase YP_001322233.1 4601553 R 293826 CDS YP_001322234.1 150392185 5314663 complement(4602534..4604015) 1 NC_009633.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 4604015 gltX 5314663 gltX Alkaliphilus metalliredigens QYMF glutamyl-tRNA synthetase YP_001322234.1 4602534 R 293826 CDS YP_001322235.1 150392186 5314664 complement(4604105..4604929) 1 NC_009633.1 PFAM: protein of unknown function DUF1002; KEGG: tte:TTE1117 hypothetical protein; hypothetical protein 4604929 5314664 Amet_4504 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322235.1 4604105 R 293826 CDS YP_001322236.1 150392187 5314665 complement(4605028..4605507) 1 NC_009633.1 TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; KEGG: cno:NT01CX_0736 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 4605507 5314665 Amet_4505 Alkaliphilus metalliredigens QYMF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_001322236.1 4605028 R 293826 CDS YP_001322237.1 150392188 5314666 complement(4605492..4606217) 1 NC_009633.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 4606217 ispD 5314666 ispD Alkaliphilus metalliredigens QYMF 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001322237.1 4605492 R 293826 CDS YP_001322238.1 150392189 5314667 complement(4606339..4607442) 1 NC_009633.1 PFAM: PilT protein domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Nucleotide binding protein, PINc; KEGG: ctc:CTC02627 pili retraction protein PilT; PilT domain-containing protein 4607442 5314667 Amet_4507 Alkaliphilus metalliredigens QYMF PilT domain-containing protein YP_001322238.1 4606339 R 293826 CDS YP_001322239.1 150392190 5314668 complement(4607565..4608044) 1 NC_009633.1 PFAM: transcription factor CarD; KEGG: mta:Moth_2489 transcriptional regulator, CarD family; CarD family transcriptional regulator 4608044 5314668 Amet_4508 Alkaliphilus metalliredigens QYMF CarD family transcriptional regulator YP_001322239.1 4607565 R 293826 CDS YP_001322240.1 150392191 5314669 4608333..4608728 1 NC_009633.1 KEGG: sth:STH3126 hypothetical protein; hypothetical protein 4608728 5314669 Amet_4509 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322240.1 4608333 D 293826 CDS YP_001322241.1 150392192 5314670 complement(4608787..4609863) 1 NC_009633.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA 4609863 5314670 Amet_4510 Alkaliphilus metalliredigens QYMF DNA integrity scanning protein DisA YP_001322241.1 4608787 R 293826 CDS YP_001322242.1 150392193 5314671 complement(4610029..4611396) 1 NC_009633.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 4611396 5314671 Amet_4511 Alkaliphilus metalliredigens QYMF DNA repair protein RadA YP_001322242.1 4610029 R 293826 CDS YP_001322243.1 150392194 5314672 complement(4611745..4614183) 1 NC_009633.1 PFAM: UvrB/UvrC protein; AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: tte:TTE2327 ATPases with chaperone activity, ATP-binding subunit; ATPase 4614183 5314672 Amet_4512 Alkaliphilus metalliredigens QYMF ATPase YP_001322243.1 4611745 R 293826 CDS YP_001322244.1 150392195 5314673 complement(4614196..4615221) 1 NC_009633.1 PFAM: ATP:guanido phosphotransferase; KEGG: cth:Cthe_1790 ATP:guanido phosphotransferase; ATP:guanido phosphotransferase 4615221 5314673 Amet_4513 Alkaliphilus metalliredigens QYMF ATP:guanido phosphotransferase YP_001322244.1 4614196 R 293826 CDS YP_001322245.1 150392196 5314674 complement(4615233..4615742) 1 NC_009633.1 PFAM: UvrB/UvrC protein; KEGG: tte:TTE2329 hypothetical protein; UvrB/UvrC protein 4615742 5314674 Amet_4514 Alkaliphilus metalliredigens QYMF UvrB/UvrC protein YP_001322245.1 4615233 R 293826 CDS YP_001322246.1 150392197 5314675 complement(4616020..4618089) 1 NC_009633.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; GTP-binding protein, HSR1-related; elongation factor Tu, domain 2 protein; elongation factor G, domain IV; Miro domain protein; KEGG: tte:TTE2333 translation elongation and release factors (GTPases); translation elongation factor G 4618089 5314675 Amet_4515 Alkaliphilus metalliredigens QYMF translation elongation factor G YP_001322246.1 4616020 R 293826 CDS YP_001322247.1 150392198 5314676 4618340..4619416 1 NC_009633.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; KEGG: mta:Moth_0515 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase 4619416 5314676 Amet_4516 Alkaliphilus metalliredigens QYMF histidinol-phosphate aminotransferase YP_001322247.1 4618340 D 293826 CDS YP_001322248.1 150392199 5314677 4619580..4620062 1 NC_009633.1 PFAM: superoxide dismutase, copper/zinc binding; KEGG: ctc:CTC00590 superoxide dismutase (Cu-Zn); superoxide dismutase, copper/zinc binding 4620062 5314677 Amet_4517 Alkaliphilus metalliredigens QYMF superoxide dismutase, copper/zinc binding YP_001322248.1 4619580 D 293826 CDS YP_001322249.1 150392200 5314678 complement(4620069..4621022) 1 NC_009633.1 KEGG: dar:Daro_3104 hypothetical protein; hypothetical protein 4621022 5314678 Amet_4518 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322249.1 4620069 R 293826 CDS YP_001322250.1 150392201 5314679 4621309..4622589 1 NC_009633.1 PFAM: Chloride channel, core; KEGG: mtp:Mthe_1465 Cl-channel, voltage-gated family protein; chloride channel core protein 4622589 5314679 Amet_4519 Alkaliphilus metalliredigens QYMF chloride channel core protein YP_001322250.1 4621309 D 293826 CDS YP_001322251.1 150392202 5314680 complement(4622709..4625063) 1 NC_009633.1 TIGRFAM: ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent; PFAM: ATP-cone domain protein; KEGG: lac:LBA0041 ribonucleoside triphosphate reductase; ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent 4625063 5314680 Amet_4520 Alkaliphilus metalliredigens QYMF ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent YP_001322251.1 4622709 R 293826 CDS YP_001322252.1 150392203 5314681 complement(4625283..4626491) 1 NC_009633.1 KEGG: sth:STH1268 hypothetical protein; hypothetical protein 4626491 5314681 Amet_4521 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322252.1 4625283 R 293826 CDS YP_001322253.1 150392204 5314682 complement(4626621..4627130) 1 NC_009633.1 KEGG: tte:TTE2338 hypothetical protein; hypothetical protein 4627130 5314682 Amet_4522 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322253.1 4626621 R 293826 CDS YP_001322254.1 150392205 5314683 complement(4627381..4628226) 1 NC_009633.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 4628226 5314683 Amet_4523 Alkaliphilus metalliredigens QYMF 3-hydroxybutyryl-CoA dehydrogenase YP_001322254.1 4627381 R 293826 CDS YP_001322255.1 150392206 5314687 complement(4634059..4635558) 1 NC_009633.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: tte:TTE2372 lysyl-tRNA synthetase class II; lysyl-tRNA synthetase 4635558 5314687 Amet_4524 Alkaliphilus metalliredigens QYMF lysyl-tRNA synthetase YP_001322255.1 4634059 R 293826 CDS YP_001322256.1 150392207 5314688 complement(4635577..4636053) 1 NC_009633.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 4636053 greA 5314688 greA Alkaliphilus metalliredigens QYMF transcription elongation factor GreA YP_001322256.1 4635577 R 293826 CDS YP_001322257.1 150392208 5314689 complement(4636336..4637259) 1 NC_009633.1 KEGG: tte:TTE2375 hypothetical protein; hypothetical protein 4637259 5314689 Amet_4526 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322257.1 4636336 R 293826 CDS YP_001322258.1 150392209 5314690 complement(4637425..4638390) 1 NC_009633.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; dihydroorotate dehydrogenase; KEGG: tte:TTE0344 predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family; nifR3 family TIM-barrel protein 4638390 5314690 Amet_4527 Alkaliphilus metalliredigens QYMF nifR3 family TIM-barrel protein YP_001322258.1 4637425 R 293826 CDS YP_001322259.1 150392210 5314691 complement(4638447..4639253) 1 NC_009633.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 4639253 5314691 Amet_4528 Alkaliphilus metalliredigens QYMF pantothenate kinase YP_001322259.1 4638447 R 293826 CDS YP_001322260.1 150392211 5314692 complement(4639282..4639806) 1 NC_009633.1 KEGG: tte:TTE2382 membrane protein; membrane protein 4639806 5314692 Amet_4529 Alkaliphilus metalliredigens QYMF membrane protein YP_001322260.1 4639282 R 293826 CDS YP_001322261.1 150392212 5314693 complement(4639936..4640775) 1 NC_009633.1 PFAM: chemotaxis sensory transducer; KEGG: bld:BLi00758 YfmS; methyl-accepting chemotaxis sensory transducer 4640775 5314693 Amet_4530 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001322261.1 4639936 R 293826 CDS YP_001322262.1 150392213 5314694 complement(4641050..4642333) 1 NC_009633.1 PFAM: Gluconate transporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bha:BH3897 hypothetical protein; citrate transporter 4642333 5314694 Amet_4531 Alkaliphilus metalliredigens QYMF citrate transporter YP_001322262.1 4641050 R 293826 CDS YP_001322263.1 150392214 5314695 complement(4642364..4643917) 1 NC_009633.1 PFAM: coenzyme A transferase; KEGG: bha:BH3898 acetyl-CoA:acetoacetyl-CoA transferase; coenzyme A transferase 4643917 5314695 Amet_4532 Alkaliphilus metalliredigens QYMF coenzyme A transferase YP_001322263.1 4642364 R 293826 CDS YP_001322264.1 150392215 5314696 complement(4644242..4645639) 1 NC_009633.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: PAS domain containing protein; AAA ATPase; KEGG: btl:BALH_2657 sensory box sigma-54 dependent DNA-binding response regulator; sigma-54 dependent trancsriptional regulator 4645639 5314696 Amet_4533 Alkaliphilus metalliredigens QYMF sigma-54 dependent trancsriptional regulator YP_001322264.1 4644242 R 293826 CDS YP_001322265.1 150392216 5314697 complement(4645714..4646694) 1 NC_009633.1 TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11 domain protein; KEGG: cno:NT01CX_0898 BirA bifunctional protein, putative; biotin--acetyl-CoA-carboxylase ligase 4646694 5314697 Amet_4534 Alkaliphilus metalliredigens QYMF biotin--acetyl-CoA-carboxylase ligase YP_001322265.1 4645714 R 293826 CDS YP_001322266.1 150392217 5314698 complement(4646935..4648173) 1 NC_009633.1 TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; KEGG: saz:Sama_1053 oxaloacetate decarboxylase; sodium ion-translocating decarboxylase subunit beta 4648173 5314698 Amet_4535 Alkaliphilus metalliredigens QYMF sodium ion-translocating decarboxylase subunit beta YP_001322266.1 4646935 R 293826 CDS YP_001322267.1 150392218 5314699 complement(4648211..4648597) 1 NC_009633.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cth:Cthe_0700 biotin/lipoyl attachment protein; biotin/lipoyl attachment domain-containing protein 4648597 5314699 Amet_4536 Alkaliphilus metalliredigens QYMF biotin/lipoyl attachment domain-containing protein YP_001322267.1 4648211 R 293826 CDS YP_001322268.1 150392219 5314700 complement(4648620..4649021) 1 NC_009633.1 PFAM: sodium pump decarboxylase, gamma subunit; sodium pump decarboxylase subunit gamma 4649021 5314700 Amet_4537 Alkaliphilus metalliredigens QYMF sodium pump decarboxylase subunit gamma YP_001322268.1 4648620 R 293826 CDS YP_001322269.1 150392220 5314701 complement(4649057..4650604) 1 NC_009633.1 PFAM: carboxyl transferase; KEGG: tte:TTE2385 Acetyl-CoA carboxylase alpha subunit; carboxyl transferase 4650604 5314701 Amet_4538 Alkaliphilus metalliredigens QYMF carboxyl transferase YP_001322269.1 4649057 R 293826 CDS YP_001322270.1 150392221 5314702 complement(4650675..4651085) 1 NC_009633.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfu:Sfum_0455 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 4651085 5314702 Amet_4539 Alkaliphilus metalliredigens QYMF glyoxalase/bleomycin resistance protein/dioxygenase YP_001322270.1 4650675 R 293826 CDS YP_001322271.1 150392222 5314703 complement(4651100..4652041) 1 NC_009633.1 TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: AAA ATPase; KEGG: tko:TK0329 lysine/arginine/ornithine transport system kinase; LAO/AO transport system ATPase 4652041 5314703 Amet_4540 Alkaliphilus metalliredigens QYMF LAO/AO transport system ATPase YP_001322271.1 4651100 R 293826 CDS YP_001322272.1 150392223 5314704 complement(4652064..4652462) 1 NC_009633.1 PFAM: cobalamin B12-binding domain protein; KEGG: tte:TTE2388 methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding); cobalamin B12-binding domain-containing protein 4652462 5314704 Amet_4541 Alkaliphilus metalliredigens QYMF cobalamin B12-binding domain-containing protein YP_001322272.1 4652064 R 293826 CDS YP_001322273.1 150392224 5314705 complement(4652489..4654168) 1 NC_009633.1 TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; KEGG: tte:TTE2389 Methylmalonyl-CoA mutase, N-terminal domain/subunit; methylmalonyl-CoA mutase large subunit 4654168 5314705 Amet_4542 Alkaliphilus metalliredigens QYMF methylmalonyl-CoA mutase large subunit YP_001322273.1 4652489 R 293826 CDS YP_001322274.1 150392225 5314706 complement(4654603..4656672) 1 NC_009633.1 TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: tte:TTE2393 ATP-dependent Zn proteases; ATP-dependent metalloprotease FtsH 4656672 5314706 Amet_4543 Alkaliphilus metalliredigens QYMF ATP-dependent metalloprotease FtsH YP_001322274.1 4654603 R 293826 CDS YP_001322275.1 150392226 5314707 complement(4656789..4658192) 1 NC_009633.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: tte:TTE2395 predicted ATPase of the PP-loop superfamily implicated in cell cycle control; tRNA(Ile)-lysidine synthetase 4658192 5314707 Amet_4544 Alkaliphilus metalliredigens QYMF tRNA(Ile)-lysidine synthetase YP_001322275.1 4656789 R 293826 CDS YP_001322276.1 150392227 5314708 complement(4658349..4659248) 1 NC_009633.1 PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: oih:OB0076 serine:threonine protein kinase; protein kinase 4659248 5314708 Amet_4545 Alkaliphilus metalliredigens QYMF protein kinase YP_001322276.1 4658349 R 293826 CDS YP_001322277.1 150392228 5314709 complement(4659337..4660074) 1 NC_009633.1 KEGG: bsu:BG10128 similar to unknown proteins; hypothetical protein 4660074 5314709 Amet_4546 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322277.1 4659337 R 293826 CDS YP_001322278.1 150392229 5314710 complement(4660272..4660403) 1 NC_009633.1 hypothetical protein 4660403 5314710 Amet_4547 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322278.1 4660272 R 293826 CDS YP_001322279.1 150392230 5314711 complement(4660448..4661203) 1 NC_009633.1 PFAM: cobalamin B12-binding domain protein; KEGG: tte:TTE0727 D-lysine 5,6-aminomutase beta subunit; cobalamin B12-binding domain-containing protein 4661203 5314711 Amet_4548 Alkaliphilus metalliredigens QYMF cobalamin B12-binding domain-containing protein YP_001322279.1 4660448 R 293826 CDS YP_001322280.1 150392231 5314712 complement(4661203..4662759) 1 NC_009633.1 PFAM: D-Lysine 5,6-aminomutase alpha subunit; KEGG: tte:TTE0726 D-lysine 5,6-aminomutase alpha subunit; D-lysine 5,6-aminomutase alpha subunit 4662759 5314712 Amet_4549 Alkaliphilus metalliredigens QYMF D-lysine 5,6-aminomutase alpha subunit YP_001322280.1 4661203 R 293826 CDS YP_001322281.1 150392232 5314713 complement(4662792..4664441) 1 NC_009633.1 PFAM: DNA mismatch repair protein MutS domain protein; SMART: MutS III domain protein; KEGG: tte:TTE0725 MutS-like ATPase involved in mismatch repair, family 2; DNA mismatch repair protein MutS domain-containing protein 4664441 5314713 Amet_4550 Alkaliphilus metalliredigens QYMF DNA mismatch repair protein MutS domain-containing protein YP_001322281.1 4662792 R 293826 CDS YP_001322282.1 150392233 5314714 complement(4664434..4665477) 1 NC_009633.1 KEGG: tte:TTE0724 hypothetical protein; hypothetical protein 4665477 5314714 Amet_4551 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322282.1 4664434 R 293826 CDS YP_001322283.1 150392234 5314715 complement(4665510..4666754) 1 NC_009633.1 TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: ctc:CTC00890 L-lysine 2,3-aminomutase; lysine 2,3-aminomutase YodO family protein 4666754 5314715 Amet_4552 Alkaliphilus metalliredigens QYMF lysine 2,3-aminomutase YodO family protein YP_001322283.1 4665510 R 293826 CDS YP_001322284.1 150392235 5314716 complement(4666776..4667813) 1 NC_009633.1 KEGG: pgi:PG1069 alcohol dehydrogenase, zinc-containing, putative; zinc-containing alcohol dehydrogenase 4667813 5314716 Amet_4553 Alkaliphilus metalliredigens QYMF zinc-containing alcohol dehydrogenase YP_001322284.1 4666776 R 293826 CDS YP_001322285.1 150392236 5314717 complement(4668068..4669468) 1 NC_009633.1 TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: tte:TTE0717 NtrC family transcriptional regulator, ATPase domain; sigma-54 dependent trancsriptional regulator 4669468 5314717 Amet_4554 Alkaliphilus metalliredigens QYMF sigma-54 dependent trancsriptional regulator YP_001322285.1 4668068 R 293826 CDS YP_001322286.1 150392237 5314718 complement(4669562..4670701) 1 NC_009633.1 PFAM: putative RNA methylase; KEGG: dsy:DSY2076 hypothetical protein; putative RNA methylase 4670701 5314718 Amet_4555 Alkaliphilus metalliredigens QYMF putative RNA methylase YP_001322286.1 4669562 R 293826 CDS YP_001322287.1 150392238 5314719 complement(4670816..4671136) 1 NC_009633.1 hypothetical protein 4671136 5314719 Amet_4556 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322287.1 4670816 R 293826 CDS YP_001322288.1 150392239 5314721 complement(4671401..4672336) 1 NC_009633.1 PFAM: metallophosphoesterase; KEGG: bca:BCE_2541 hypothetical protein; metallophosphoesterase 4672336 5314721 Amet_4558 Alkaliphilus metalliredigens QYMF metallophosphoesterase YP_001322288.1 4671401 R 293826 CDS YP_001322289.1 150392240 5314722 complement(4672450..4673061) 1 NC_009633.1 hypothetical protein 4673061 5314722 Amet_4559 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322289.1 4672450 R 293826 CDS YP_001322290.1 150392241 5314723 4673569..4674918 1 NC_009633.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 4674918 5314723 Amet_4560 Alkaliphilus metalliredigens QYMF hydroxylamine reductase YP_001322290.1 4673569 D 293826 CDS YP_001322291.1 150392242 5314724 4675517..4676032 1 NC_009633.1 KEGG: ctc:CTC00833 putative tryptophan transport protein; putative tryptophan transport protein 4676032 5314724 Amet_4561 Alkaliphilus metalliredigens QYMF putative tryptophan transport protein YP_001322291.1 4675517 D 293826 CDS YP_001322292.1 150392243 5314725 complement(4676224..4677399) 1 NC_009633.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 4677399 5314725 Amet_4562 Alkaliphilus metalliredigens QYMF aspartate aminotransferase YP_001322292.1 4676224 R 293826 CDS YP_001322293.1 150392244 5314726 complement(4677649..4678437) 1 NC_009633.1 KEGG: mta:Moth_2002 biotin/lipoyl attachment; biotin/lipoyl attachment 4678437 5314726 Amet_4563 Alkaliphilus metalliredigens QYMF biotin/lipoyl attachment YP_001322293.1 4677649 R 293826 CDS YP_001322294.1 150392245 5314727 complement(4678431..4679234) 1 NC_009633.1 PFAM: protein of unknown function DUF182; KEGG: aba:Acid345_2647 protein of unknown function DUF182; hypothetical protein 4679234 5314727 Amet_4564 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322294.1 4678431 R 293826 CDS YP_001322295.1 150392246 5314728 complement(4679235..4679813) 1 NC_009633.1 KEGG: gme:Gmet_2140 conserved hypothetical protein, possibly involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein 4679813 5314728 Amet_4565 Alkaliphilus metalliredigens QYMF molybdenum cofactor biosynthesis protein YP_001322295.1 4679235 R 293826 CDS YP_001322296.1 150392247 5314729 complement(4679824..4680603) 1 NC_009633.1 KEGG: dsy:DSY0867 hypothetical protein; hypothetical protein 4680603 5314729 Amet_4566 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322296.1 4679824 R 293826 CDS YP_001322297.1 150392248 5314730 complement(4680613..4682331) 1 NC_009633.1 TIGRFAM: adenine deaminase; PFAM: amidohydrolase; KEGG: cac:CAC0887 adenine deaminase; adenine deaminase 4682331 5314730 Amet_4567 Alkaliphilus metalliredigens QYMF adenine deaminase YP_001322297.1 4680613 R 293826 CDS YP_001322298.1 150392249 5314731 complement(4682345..4683322) 1 NC_009633.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: mta:Moth_1225 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 4683322 5314731 Amet_4568 Alkaliphilus metalliredigens QYMF molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001322298.1 4682345 R 293826 CDS YP_001322299.1 150392250 5314732 complement(4683324..4684595) 1 NC_009633.1 PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: mta:Moth_1226 aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase 4684595 5314732 Amet_4569 Alkaliphilus metalliredigens QYMF aldehyde oxidase and xanthine dehydrogenase YP_001322299.1 4683324 R 293826 CDS YP_001322300.1 150392251 5314733 complement(4684579..4685067) 1 NC_009633.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: chy:CHY_0691 2Fe-2S iron-sulfur cluster binding domain; 2Fe-2S iron-sulfur cluster binding domain-containing protein 4685067 5314733 Amet_4570 Alkaliphilus metalliredigens QYMF 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001322300.1 4684579 R 293826 CDS YP_001322301.1 150392252 5314734 complement(4685114..4685980) 1 NC_009633.1 PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: chy:CHY_0690 carbon monoxide dehydrogenase, medium subunit; FAD-binding molybdopterin dehydrogenase 4685980 5314734 Amet_4571 Alkaliphilus metalliredigens QYMF FAD-binding molybdopterin dehydrogenase YP_001322301.1 4685114 R 293826 CDS YP_001322302.1 150392253 5314735 complement(4686028..4687365) 1 NC_009633.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; N-ethylammeline chlorohydrolase 4687365 5314735 Amet_4572 Alkaliphilus metalliredigens QYMF N-ethylammeline chlorohydrolase YP_001322302.1 4686028 R 293826 CDS YP_001322303.1 150392254 5314736 complement(4687631..4688980) 1 NC_009633.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: cpf:CPF_1827 xanthine/uracil permease family protein; xanthine/uracil/vitamin C permease 4688980 5314736 Amet_4573 Alkaliphilus metalliredigens QYMF xanthine/uracil/vitamin C permease YP_001322303.1 4687631 R 293826 CDS YP_001322304.1 150392255 5314737 complement(4689181..4690995) 1 NC_009633.1 TIGRFAM: adenine deaminase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: chy:CHY_0689 adenine deaminase; adenine deaminase 4690995 5314737 Amet_4574 Alkaliphilus metalliredigens QYMF adenine deaminase YP_001322304.1 4689181 R 293826 CDS YP_001322305.1 150392256 5314738 complement(4691018..4691290) 1 NC_009633.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: chy:CHY_0688 ethanolamine utilization protein EutN; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 4691290 5314738 Amet_4575 Alkaliphilus metalliredigens QYMF ethanolamine utilization protein EutN/carboxysome structural protein Ccml YP_001322305.1 4691018 R 293826 CDS YP_001322306.1 150392257 5314739 complement(4691316..4692104) 1 NC_009633.1 KEGG: rpc:RPC_1171 hypothetical protein; hypothetical protein 4692104 5314739 Amet_4576 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322306.1 4691316 R 293826 CDS YP_001322307.1 150392258 5314740 complement(4692122..4692400) 1 NC_009633.1 PFAM: microcompartments protein; KEGG: lmo:lmo1159 hypothetical protein; microcompartments protein 4692400 5314740 Amet_4577 Alkaliphilus metalliredigens QYMF microcompartments protein YP_001322307.1 4692122 R 293826 CDS YP_001322308.1 150392259 5314741 complement(4692449..4692829) 1 NC_009633.1 PFAM: microcompartments protein; KEGG: chy:CHY_0684 bacterial microcompartments family protein; microcompartments protein 4692829 5314741 Amet_4578 Alkaliphilus metalliredigens QYMF microcompartments protein YP_001322308.1 4692449 R 293826 CDS YP_001322309.1 150392260 5314742 complement(4692841..4693392) 1 NC_009633.1 hypothetical protein 4693392 5314742 Amet_4579 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322309.1 4692841 R 293826 CDS YP_001322310.1 150392261 5314743 complement(4693407..4693685) 1 NC_009633.1 PFAM: microcompartments protein; KEGG: chy:CHY_0682 propanediol utilization protein PduA; microcompartments protein 4693685 5314743 Amet_4580 Alkaliphilus metalliredigens QYMF microcompartments protein YP_001322310.1 4693407 R 293826 CDS YP_001322311.1 150392262 5314744 complement(4693704..4695059) 1 NC_009633.1 TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: chy:CHY_0681 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein; UbiD family decarboxylase 4695059 5314744 Amet_4581 Alkaliphilus metalliredigens QYMF UbiD family decarboxylase YP_001322311.1 4693704 R 293826 CDS YP_001322312.1 150392263 5314745 complement(4695075..4695632) 1 NC_009633.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: chy:CHY_0680 putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 4695632 5314745 Amet_4582 Alkaliphilus metalliredigens QYMF 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_001322312.1 4695075 R 293826 CDS YP_001322313.1 150392264 5314746 complement(4695719..4696321) 1 NC_009633.1 PFAM: isochorismatase hydrolase; KEGG: chy:CHY_0679 isochorismatase family protein; isochorismatase hydrolase 4696321 5314746 Amet_4583 Alkaliphilus metalliredigens QYMF isochorismatase hydrolase YP_001322313.1 4695719 R 293826 CDS YP_001322314.1 150392265 5314747 complement(4696365..4697780) 1 NC_009633.1 TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: chy:CHY_0678 allantoinase; dihydroorotase, multifunctional complex type 4697780 5314747 Amet_4584 Alkaliphilus metalliredigens QYMF dihydroorotase, multifunctional complex type YP_001322314.1 4696365 R 293826 CDS YP_001322315.1 150392266 5314748 complement(4697805..4699475) 1 NC_009633.1 PFAM: formate-tetrahydrofolate ligase, FTHFS; KEGG: mta:Moth_0109 formate--tetrahydrofolate ligase; formate--tetrahydrofolate ligase 4699475 5314748 Amet_4585 Alkaliphilus metalliredigens QYMF formate--tetrahydrofolate ligase YP_001322315.1 4697805 R 293826 CDS YP_001322316.1 150392267 5314749 complement(4699488..4700396) 1 NC_009633.1 TIGRFAM: glutamate formiminotransferase; PFAM: Formiminotransferase domain protein; Formiminotransferase-like; KEGG: chy:CHY_0695 glutamate formiminotransferase; glutamate formiminotransferase 4700396 5314749 Amet_4586 Alkaliphilus metalliredigens QYMF glutamate formiminotransferase YP_001322316.1 4699488 R 293826 CDS YP_001322317.1 150392268 5314750 4700718..4701410 1 NC_009633.1 PFAM: cyclase family protein; KEGG: chy:CHY_0702 putative cyclase; cyclase family protein 4701410 5314750 Amet_4587 Alkaliphilus metalliredigens QYMF cyclase family protein YP_001322317.1 4700718 D 293826 CDS YP_001322318.1 150392269 5314751 complement(4701505..4703160) 1 NC_009633.1 PFAM: purine catabolism PurC domain protein; KEGG: mta:Moth_2125 transcriptional regulator, CdaR; transcriptional regulator CdaR 4703160 5314751 Amet_4588 Alkaliphilus metalliredigens QYMF transcriptional regulator CdaR YP_001322318.1 4701505 R 293826 CDS YP_001322319.1 150392270 5314752 complement(4703389..4704033) 1 NC_009633.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: tde:TDE0046 formiminotransferase-cyclodeaminase family protein; formiminotransferase-cyclodeaminase 4704033 5314752 Amet_4589 Alkaliphilus metalliredigens QYMF formiminotransferase-cyclodeaminase YP_001322319.1 4703389 R 293826 CDS YP_001322320.1 150392271 5314753 complement(4704184..4704609) 1 NC_009633.1 PFAM: Domain of unknown function DUF1934; KEGG: tte:TTE2534 hypothetical protein; hypothetical protein 4704609 5314753 Amet_4590 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322320.1 4704184 R 293826 CDS YP_001322321.1 150392272 5314754 complement(4704634..4705734) 1 NC_009633.1 TIGRFAM: D-alanine--D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; RimK domain protein ATP-grasp; KEGG: cth:Cthe_1938 D-alanine--D-alanine ligase; D-alanine--D-alanine ligase 4705734 5314754 Amet_4591 Alkaliphilus metalliredigens QYMF D-alanine--D-alanine ligase YP_001322321.1 4704634 R 293826 CDS YP_001322322.1 150392273 5314755 complement(4705875..4706546) 1 NC_009633.1 TIGRFAM: Sporulation stage II, protein R; KEGG: cth:Cthe_1920 stage II sporulation protein R; sporulation stage II, protein R 4706546 5314755 Amet_4592 Alkaliphilus metalliredigens QYMF sporulation stage II, protein R YP_001322322.1 4705875 R 293826 CDS YP_001322323.1 150392274 5314756 complement(4706792..4707256) 1 NC_009633.1 KEGG: gka:GK0611 hypothetical protein; hypothetical protein 4707256 5314756 Amet_4593 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322323.1 4706792 R 293826 CDS YP_001322324.1 150392275 5314757 complement(4707271..4708275) 1 NC_009633.1 hypothetical protein 4708275 5314757 Amet_4594 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322324.1 4707271 R 293826 CDS YP_001322325.1 150392276 5314758 complement(4708452..4709717) 1 NC_009633.1 KEGG: cac:CAC2600 predicted membrane protein; membrane protein 4709717 5314758 Amet_4595 Alkaliphilus metalliredigens QYMF membrane protein YP_001322325.1 4708452 R 293826 CDS YP_001322326.1 150392277 5314759 complement(4709764..4710255) 1 NC_009633.1 hypothetical protein 4710255 5314759 Amet_4596 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322326.1 4709764 R 293826 CDS YP_001322327.1 150392278 5314760 complement(4710340..4711440) 1 NC_009633.1 TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: tte:TTE2554 spore germination protein homolog YndE; spore germination protein 4711440 5314760 Amet_4597 Alkaliphilus metalliredigens QYMF spore germination protein YP_001322327.1 4710340 R 293826 CDS YP_001322328.1 150392279 5314761 complement(4711444..4712553) 1 NC_009633.1 TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: tte:TTE2554 spore germination protein homolog YndE; spore germination protein 4712553 5314761 Amet_4598 Alkaliphilus metalliredigens QYMF spore germination protein YP_001322328.1 4711444 R 293826 CDS YP_001322329.1 150392280 5314762 complement(4712577..4713815) 1 NC_009633.1 PFAM: spore germination B3 GerAC family protein; KEGG: tte:TTE2553 germination protein; spore germination B3 GerAC family protein 4713815 5314762 Amet_4599 Alkaliphilus metalliredigens QYMF spore germination B3 GerAC family protein YP_001322329.1 4712577 R 293826 CDS YP_001322330.1 150392281 5314763 complement(4713843..4715423) 1 NC_009633.1 PFAM: GerA spore germination protein; KEGG: tte:TTE2555 putative spore germination protein; GerA spore germination protein 4715423 5314763 Amet_4600 Alkaliphilus metalliredigens QYMF GerA spore germination protein YP_001322330.1 4713843 R 293826 CDS YP_001322331.1 150392282 5314764 complement(4715442..4715657) 1 NC_009633.1 hypothetical protein 4715657 5314764 Amet_4601 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322331.1 4715442 R 293826 CDS YP_001322332.1 150392283 5314765 complement(4715773..4716525) 1 NC_009633.1 KEGG: tte:TTE2557 hypothetical protein; hypothetical protein 4716525 5314765 Amet_4602 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322332.1 4715773 R 293826 CDS YP_001322333.1 150392284 5314766 complement(4716551..4717252) 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: cth:Cthe_2404 transcriptional regulator, GntR family; GntR family transcriptional regulator 4717252 5314766 Amet_4603 Alkaliphilus metalliredigens QYMF GntR family transcriptional regulator YP_001322333.1 4716551 R 293826 CDS YP_001322334.1 150392285 5314767 complement(4717245..4718120) 1 NC_009633.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 4718120 ipk 5314767 ipk Alkaliphilus metalliredigens QYMF 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_001322334.1 4717245 R 293826 CDS YP_001322335.1 150392286 5314768 complement(4718315..4719886) 1 NC_009633.1 PFAM: Peptidoglycan-binding LysM; KEGG: cth:Cthe_2402 peptidoglycan-binding LysM; peptidoglycan-binding protein LysM 4719886 5314768 Amet_4605 Alkaliphilus metalliredigens QYMF peptidoglycan-binding protein LysM YP_001322335.1 4718315 R 293826 CDS YP_001322336.1 150392287 5314769 complement(4720091..4722388) 1 NC_009633.1 KEGG: tte:TTE0861 hypothetical protein; hypothetical protein 4722388 5314769 Amet_4606 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322336.1 4720091 R 293826 CDS YP_001322337.1 150392288 5314770 complement(4722571..4723533) 1 NC_009633.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 4723533 5314770 Amet_4607 Alkaliphilus metalliredigens QYMF carbamate kinase YP_001322337.1 4722571 R 293826 CDS YP_001322338.1 150392289 5314771 complement(4723626..4724618) 1 NC_009633.1 catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway; ornithine carbamoyltransferase 4724618 5314771 Amet_4608 Alkaliphilus metalliredigens QYMF ornithine carbamoyltransferase YP_001322338.1 4723626 R 293826 CDS YP_001322339.1 150392290 5314772 complement(4724677..4725897) 1 NC_009633.1 PFAM: amidinotransferase; KEGG: tte:TTE0531 Arginine deiminase; arginine deiminase 4725897 5314772 Amet_4609 Alkaliphilus metalliredigens QYMF arginine deiminase YP_001322339.1 4724677 R 293826 CDS YP_001322340.1 150392291 5314773 complement(4726060..4726326) 1 NC_009633.1 PFAM: protein of unknown function DUF1021; KEGG: cth:Cthe_2401 protein of unknown function DUF1021; hypothetical protein 4726326 5314773 Amet_4610 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322340.1 4726060 R 293826 CDS YP_001322341.1 150392292 5314774 complement(4726482..4727912) 1 NC_009633.1 TIGRFAM: SpoIID/LytB domain protein; PFAM: cell wall hydrolase/autolysin; KEGG: gka:GK3340 stage II sporulation protein D; SpoIID/LytB domain-containing protein 4727912 5314774 Amet_4611 Alkaliphilus metalliredigens QYMF SpoIID/LytB domain-containing protein YP_001322341.1 4726482 R 293826 CDS YP_001322342.1 150392293 5314775 complement(4728097..4728534) 1 NC_009633.1 PFAM: regulatory protein, MarR; KEGG: ctc:CTC00126 transcriptional regulator, marR family; MarR family transcriptional regulator 4728534 5314775 Amet_4612 Alkaliphilus metalliredigens QYMF MarR family transcriptional regulator YP_001322342.1 4728097 R 293826 CDS YP_001322343.1 150392294 5314776 4728721..4728885 1 NC_009633.1 KEGG: swo:Swol_0466 hypothetical protein; hypothetical protein 4728885 5314776 Amet_4613 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322343.1 4728721 D 293826 CDS YP_001322344.1 150392295 5314777 complement(4729005..4729184) 1 NC_009633.1 hypothetical protein 4729184 5314777 Amet_4614 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322344.1 4729005 R 293826 CDS YP_001322345.1 150392296 5314778 4729482..4729985 1 NC_009633.1 Contains selenocysteine; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: gme:Gmet_2723 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 4729985 5314778 Amet_4615 Alkaliphilus metalliredigens QYMF alkyl hydroperoxide reductase YP_001322345.1 4729482 D 293826 CDS YP_001322346.1 150392297 5314779 complement(4730052..4731554) 1 NC_009633.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 4731554 5314779 Amet_4616 Alkaliphilus metalliredigens QYMF leucyl aminopeptidase YP_001322346.1 4730052 R 293826 CDS YP_001322347.1 150392298 5314780 4732178..4733587 1 NC_009633.1 PFAM: Citrate transporter; Na+/H+ antiporter NhaC; KEGG: bce:BC0373 Na+/H+ antiporter NnaC; Na+/H+ antiporter NhaC 4733587 5314780 Amet_4617 Alkaliphilus metalliredigens QYMF Na+/H+ antiporter NhaC YP_001322347.1 4732178 D 293826 CDS YP_001322348.1 150392299 5314781 complement(4733678..4734100) 1 NC_009633.1 hypothetical protein 4734100 5314781 Amet_4618 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322348.1 4733678 R 293826 CDS YP_001322349.1 150392300 5314782 complement(4734193..4734822) 1 NC_009633.1 PFAM: FMN-binding domain protein; KEGG: dsy:DSY3139 putative fumarate reductase flavoprotein subunit; FMN-binding domain-containing protein 4734822 5314782 Amet_4619 Alkaliphilus metalliredigens QYMF FMN-binding domain-containing protein YP_001322349.1 4734193 R 293826 CDS YP_001322350.1 150392301 5314783 complement(4735064..4735714) 1 NC_009633.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: chy:CHY_2045 phosphate transport system regulatory protein PhoU; phosphate uptake regulator PhoU 4735714 5314783 Amet_4620 Alkaliphilus metalliredigens QYMF phosphate uptake regulator PhoU YP_001322350.1 4735064 R 293826 CDS YP_001322351.1 150392302 5314784 complement(4735732..4736484) 1 NC_009633.1 TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chy:CHY_2116 phosphate ABC transporter, ATP-binding protein PstB; phosphate ABC transporter ATPase 4736484 5314784 Amet_4621 Alkaliphilus metalliredigens QYMF phosphate ABC transporter ATPase YP_001322351.1 4735732 R 293826 CDS YP_001322352.1 150392303 5314785 complement(4736517..4737362) 1 NC_009633.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfu:Sfum_0703 phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter permease 4737362 5314785 Amet_4622 Alkaliphilus metalliredigens QYMF phosphate ABC transporter permease YP_001322352.1 4736517 R 293826 CDS YP_001322353.1 150392304 5314786 complement(4737363..4738295) 1 NC_009633.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mba:Mbar_A1779 phosphate ABC transporter, permease protein; phosphate ABC transporter permease 4738295 5314786 Amet_4623 Alkaliphilus metalliredigens QYMF phosphate ABC transporter permease YP_001322353.1 4737363 R 293826 CDS YP_001322354.1 150392305 5314787 complement(4738530..4739441) 1 NC_009633.1 TIGRFAM: phosphate binding protein; KEGG: mma:MM2005 phosphate-binding protein; phosphate binding protein 4739441 5314787 Amet_4624 Alkaliphilus metalliredigens QYMF phosphate binding protein YP_001322354.1 4738530 R 293826 CDS YP_001322355.1 150392306 5314788 4739736..4740407 1 NC_009633.1 PFAM: beta-lactamase domain protein; KEGG: tma:TM1162 conserved hypothetical protein; beta-lactamase domain-containing protein 4740407 5314788 Amet_4625 Alkaliphilus metalliredigens QYMF beta-lactamase domain-containing protein YP_001322355.1 4739736 D 293826 CDS YP_001322356.1 150392307 5314789 4740608..4741459 1 NC_009633.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: ctc:CTC00807 membrane protein, putative transporter; hypothetical protein 4741459 5314789 Amet_4626 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322356.1 4740608 D 293826 CDS YP_001322357.1 150392308 5314790 complement(4741803..4742861) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0512 iron transport system ATP-binding protein; ABC transporter-like protein 4742861 5314790 Amet_4627 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001322357.1 4741803 R 293826 CDS YP_001322358.1 150392309 5314791 complement(4742874..4744550) 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0514 iron(III) transport system permease protein; binding-protein-dependent transport system inner membrane protein 4744550 5314791 Amet_4628 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001322358.1 4742874 R 293826 CDS YP_001322359.1 150392310 5314792 complement(4744609..4745688) 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 1; KEGG: bha:BH0513 iron(III) transport system substrate-binding protein; extracellular solute-binding protein 4745688 5314792 Amet_4629 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001322359.1 4744609 R 293826 CDS YP_001322360.1 150392311 5314793 complement(4746120..4747298) 1 NC_009633.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: ctc:CTC00312 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase 4747298 5314793 Amet_4630 Alkaliphilus metalliredigens QYMF acetyl-CoA acetyltransferase YP_001322360.1 4746120 R 293826 CDS YP_001322361.1 150392312 5314794 complement(4747338..4748078) 1 NC_009633.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: bha:BH3896 3-oxoacyl-(acyl-carrier protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 4748078 5314794 Amet_4631 Alkaliphilus metalliredigens QYMF 3-oxoacyl-(acyl-carrier-protein) reductase YP_001322361.1 4747338 R 293826 CDS YP_001322362.1 150392313 5314795 complement(4748469..4749656) 1 NC_009633.1 PFAM: protein of unknown function UPF0118; KEGG: cno:NT01CX_1730 permease; hypothetical protein 4749656 5314795 Amet_4632 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322362.1 4748469 R 293826 CDS YP_001322363.1 150392314 5314796 complement(4749804..4750517) 1 NC_009633.1 PFAM: protein of unknown function DUF421; KEGG: bld:BLi00270 hypothetical protein; hypothetical protein 4750517 5314796 Amet_4633 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322363.1 4749804 R 293826 CDS YP_001322364.1 150392315 5314797 complement(4750627..4751367) 1 NC_009633.1 TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; KEGG: ctc:CTC01851 tRNA pseudouridine synthase A; tRNA pseudouridine synthase A 4751367 5314797 Amet_4634 Alkaliphilus metalliredigens QYMF tRNA pseudouridine synthase A YP_001322364.1 4750627 R 293826 CDS YP_001322365.1 150392316 5314798 complement(4751421..4752746) 1 NC_009633.1 KEGG: sus:Acid_1308 hypothetical protein; hypothetical protein 4752746 5314798 Amet_4635 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322365.1 4751421 R 293826 CDS YP_001322366.1 150392317 5314799 complement(4752712..4754052) 1 NC_009633.1 PFAM: glutamate--cysteine ligase, GCS2; KEGG: zmo:ZMO1556 gamma-glutamylcysteine synthetase; glutamate--cysteine ligase 4754052 5314799 Amet_4636 Alkaliphilus metalliredigens QYMF glutamate--cysteine ligase YP_001322366.1 4752712 R 293826 CDS YP_001322367.1 150392318 5314800 complement(4754317..4755639) 1 NC_009633.1 hypothetical protein 4755639 5314800 Amet_4637 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322367.1 4754317 R 293826 CDS YP_001322368.1 150392319 5314801 4755922..4757907 1 NC_009633.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY4038 hypothetical protein; methyl-accepting chemotaxis sensory transducer 4757907 5314801 Amet_4638 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001322368.1 4755922 D 293826 CDS YP_001322369.1 150392320 5314802 complement(4758013..4758846) 1 NC_009633.1 PFAM: nitroreductase; KEGG: dsy:DSY1470 hypothetical protein; nitroreductase 4758846 5314802 Amet_4639 Alkaliphilus metalliredigens QYMF nitroreductase YP_001322369.1 4758013 R 293826 CDS YP_001322370.1 150392321 5314803 complement(4759248..4760252) 1 NC_009633.1 KEGG: tko:TK0873 hypothetical protein; hypothetical protein 4760252 5314803 Amet_4640 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322370.1 4759248 R 293826 CDS YP_001322371.1 150392322 5314804 complement(4760264..4760881) 1 NC_009633.1 KEGG: tko:TK0874 predicted metallophosphoesterase, calcineurin superfamily; calcineurin superfamily metallophosphoesterase 4760881 5314804 Amet_4641 Alkaliphilus metalliredigens QYMF calcineurin superfamily metallophosphoesterase YP_001322371.1 4760264 R 293826 CDS YP_001322372.1 150392323 5314805 complement(4760988..4761212) 1 NC_009633.1 PFAM: thiamineS protein; KEGG: chy:CHY_0791 molybdopterin converting factor, subunit 1; sulfur transfer protein ThiS 4761212 5314805 Amet_4642 Alkaliphilus metalliredigens QYMF sulfur transfer protein ThiS YP_001322372.1 4760988 R 293826 CDS YP_001322373.1 150392324 5314806 complement(4761294..4763105) 1 NC_009633.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: chy:CHY_0789 aldehyde ferredoxin oxidoreductase, tungsten-containing; aldehyde ferredoxin oxidoreductase 4763105 5314806 Amet_4643 Alkaliphilus metalliredigens QYMF aldehyde ferredoxin oxidoreductase YP_001322373.1 4761294 R 293826 CDS YP_001322374.1 150392325 5314807 complement(4763284..4765221) 1 NC_009633.1 TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: cno:NT01CX_0469 signal-transduction and transcriptional-control protein; sigma-54 dependent trancsriptional regulator 4765221 5314807 Amet_4644 Alkaliphilus metalliredigens QYMF sigma-54 dependent trancsriptional regulator YP_001322374.1 4763284 R 293826 CDS YP_001322375.1 150392326 5314808 complement(4765353..4766780) 1 NC_009633.1 PFAM: peptidase M28; KEGG: ctc:pE88_21 putative aminopeptidase; peptidase M28 4766780 5314808 Amet_4645 Alkaliphilus metalliredigens QYMF peptidase M28 YP_001322375.1 4765353 R 293826 CDS YP_001322376.1 150392327 5314809 4767040..4769004 1 NC_009633.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: cpf:CPF_1799 molybdopterin oxidoreductase; nitrate reductase 4769004 5314809 Amet_4646 Alkaliphilus metalliredigens QYMF nitrate reductase YP_001322376.1 4767040 D 293826 CDS YP_001322377.1 150392328 5314811 complement(4769710..4771692) 1 NC_009633.1 TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: ctc:CTC01332 transketolase; transketolase 4771692 5314811 Amet_4648 Alkaliphilus metalliredigens QYMF transketolase YP_001322377.1 4769710 R 293826 CDS YP_001322378.1 150392329 5314812 complement(4771920..4772408) 1 NC_009633.1 PFAM: dUTPase; KEGG: bha:BH3133 hypothetical protein; dUTPase 4772408 5314812 Amet_4649 Alkaliphilus metalliredigens QYMF dUTPase YP_001322378.1 4771920 R 293826 CDS YP_001322379.1 150392330 5314813 complement(4772749..4773249) 1 NC_009633.1 PFAM: SEC-C motif domain protein; KEGG: ctc:CTC00166 hypothetical protein; hypothetical protein 4773249 5314813 Amet_4650 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322379.1 4772749 R 293826 CDS YP_001322380.1 150392331 5314814 complement(4773371..4774762) 1 NC_009633.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pfu:PF1850 hypothetical damage-inducible DinF protein; MATE efflux family protein 4774762 5314814 Amet_4651 Alkaliphilus metalliredigens QYMF MATE efflux family protein YP_001322380.1 4773371 R 293826 CDS YP_001322381.1 150392332 5314815 4775122..4775757 1 NC_009633.1 TIGRFAM: putative proton-coupled thiamine transporter YuaJ; KEGG: tte:TTE2512 hypothetical protein; putative proton-coupled thiamine transporter YuaJ 4775757 5314815 Amet_4652 Alkaliphilus metalliredigens QYMF putative proton-coupled thiamine transporter YuaJ YP_001322381.1 4775122 D 293826 CDS YP_001322382.1 150392333 5314816 4775907..4776281 1 NC_009633.1 PFAM: Desulfoferrodoxin, ferrous iron-binding region; KEGG: tte:TTE2229 putative superoxide reductase; desulfoferrodoxin, ferrous iron-binding region 4776281 5314816 Amet_4653 Alkaliphilus metalliredigens QYMF desulfoferrodoxin, ferrous iron-binding region YP_001322382.1 4775907 D 293826 CDS YP_001322383.1 150392334 5314817 complement(4776327..4776557) 1 NC_009633.1 hypothetical protein 4776557 5314817 Amet_4654 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322383.1 4776327 R 293826 CDS YP_001322384.1 150392335 5314818 complement(4776614..4778053) 1 NC_009633.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: bcz:BCZK1088 cardiolipin synthetase; phospholipase D/transphosphatidylase 4778053 5314818 Amet_4655 Alkaliphilus metalliredigens QYMF phospholipase D/transphosphatidylase YP_001322384.1 4776614 R 293826 CDS YP_001322385.1 150392336 5314819 complement(4778120..4779340) 1 NC_009633.1 PFAM: Patatin; KEGG: tte:TTE1792 hypothetical protein; patatin 4779340 5314819 Amet_4656 Alkaliphilus metalliredigens QYMF patatin YP_001322385.1 4778120 R 293826 CDS YP_001322386.1 150392337 5314820 complement(4779716..4783231) 1 NC_009633.1 PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tte:TTE0445 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 4783231 5314820 Amet_4657 Alkaliphilus metalliredigens QYMF pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_001322386.1 4779716 R 293826 CDS YP_001322387.1 150392338 5314821 complement(4783655..4785388) 1 NC_009633.1 PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0640 ABC transporter; ABC transporter transmembrane region 4785388 5314821 Amet_4658 Alkaliphilus metalliredigens QYMF ABC transporter transmembrane region YP_001322387.1 4783655 R 293826 CDS YP_001322388.1 150392339 5314822 complement(4785645..4786463) 1 NC_009633.1 KEGG: bha:BH1562 hypothetical protein; hypothetical protein 4786463 5314822 Amet_4659 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322388.1 4785645 R 293826 CDS YP_001322389.1 150392340 5314823 complement(4786673..4787698) 1 NC_009633.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 4787698 5314823 Amet_4660 Alkaliphilus metalliredigens QYMF asparagine synthetase AsnA YP_001322389.1 4786673 R 293826 CDS YP_001322390.1 150392341 5314824 complement(4788172..4788585) 1 NC_009633.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: ctc:CTC02359 hemerythrin-like domain protein DcrH; hemerythrin-like metal-binding protein 4788585 5314824 Amet_4661 Alkaliphilus metalliredigens QYMF hemerythrin-like metal-binding protein YP_001322390.1 4788172 R 293826 CDS YP_001322391.1 150392342 5314825 4789360..4789539 1 NC_009633.1 hypothetical protein 4789539 5314825 Amet_4662 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322391.1 4789360 D 293826 CDS YP_001322392.1 150392343 5314826 4789695..4791239 1 NC_009633.1 PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cth:Cthe_1461 FAD dependent oxidoreductase; FAD dependent oxidoreductase 4791239 5314826 Amet_4663 Alkaliphilus metalliredigens QYMF FAD dependent oxidoreductase YP_001322392.1 4789695 D 293826 CDS YP_001322393.1 150392344 5314827 complement(4791459..4791941) 1 NC_009633.1 PFAM: protein of unknown function DUF458; KEGG: cac:CAC0166 hypothetical protein; hypothetical protein 4791941 5314827 Amet_4664 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322393.1 4791459 R 293826 CDS YP_001322394.1 150392345 5314828 complement(4792297..4793640) 1 NC_009633.1 PFAM: protein of unknown function DUF1063; KEGG: ctc:CTC02309 hypothetical protein; hypothetical protein 4793640 5314828 Amet_4665 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322394.1 4792297 R 293826 CDS YP_001322395.1 150392346 5314829 complement(4793791..4795572) 1 NC_009633.1 PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: tte:TTE0268 NtrC family transcriptional regulator, ATPase domain; sigma-54 dependent trancsriptional regulator 4795572 5314829 Amet_4666 Alkaliphilus metalliredigens QYMF sigma-54 dependent trancsriptional regulator YP_001322395.1 4793791 R 293826 CDS YP_001322396.1 150392347 5314830 complement(4795762..4796838) 1 NC_009633.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: cac:CAC3580 dioxygenase related to 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 4796838 5314830 Amet_4667 Alkaliphilus metalliredigens QYMF 2-nitropropane dioxygenase YP_001322396.1 4795762 R 293826 CDS YP_001322397.1 150392348 5314831 complement(4797056..4798051) 1 NC_009633.1 PFAM: ABC-2 type transporter; KEGG: dar:Daro_0987 ABC-2:ABC transporter related; ABC transporter 4798051 5314831 Amet_4668 Alkaliphilus metalliredigens QYMF ABC transporter YP_001322397.1 4797056 R 293826 CDS YP_001322398.1 150392349 5314832 complement(4798065..4799108) 1 NC_009633.1 KEGG: deh:cbdb_A134 ABC transporter, permease protein; hypothetical protein 4799108 5314832 Amet_4669 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322398.1 4798065 R 293826 CDS YP_001322399.1 150392350 5314833 complement(4799110..4799964) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msm:MSMEG_1502 ABC transporter, ATP-binding protein; ABC transporter-like protein 4799964 5314833 Amet_4670 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001322399.1 4799110 R 293826 CDS YP_001322400.1 150392351 5314834 complement(4800037..4800666) 1 NC_009633.1 PFAM: regulatory protein, TetR; KEGG: dsy:DSY4804 hypothetical protein; TetR family transcriptional regulator 4800666 5314834 Amet_4671 Alkaliphilus metalliredigens QYMF TetR family transcriptional regulator YP_001322400.1 4800037 R 293826 CDS YP_001322401.1 150392352 5314835 complement(4800933..4802747) 1 NC_009633.1 PFAM: DNA mismatch repair protein MutS domain protein; KEGG: dsy:DSY2437 hypothetical protein; DNA mismatch repair protein MutS domain-containing protein 4802747 5314835 Amet_4672 Alkaliphilus metalliredigens QYMF DNA mismatch repair protein MutS domain-containing protein YP_001322401.1 4800933 R 293826 CDS YP_001322402.1 150392353 5314838 4803859..4804539 1 NC_009633.1 PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: cpr:CPR_0208 transcriptional regulator, AraC family; helix-turn-helix domain-containing protein 4804539 5314838 Amet_4675 Alkaliphilus metalliredigens QYMF helix-turn-helix domain-containing protein YP_001322402.1 4803859 D 293826 CDS YP_001322403.1 150392354 5314839 complement(4805679..4806068) 1 NC_009633.1 hypothetical protein 4806068 5314839 Amet_4676 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322403.1 4805679 R 293826 CDS YP_001322404.1 150392355 5314840 complement(4806151..4807011) 1 NC_009633.1 KEGG: mbu:Mbur_1109 hypothetical protein; hypothetical protein 4807011 5314840 Amet_4677 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322404.1 4806151 R 293826 CDS YP_001322405.1 150392356 5314841 4807333..4807452 1 NC_009633.1 hypothetical protein 4807452 5314841 Amet_4678 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322405.1 4807333 D 293826 CDS YP_001322406.1 150392357 5314842 4807499..4807879 1 NC_009633.1 hypothetical protein 4807879 5314842 Amet_4679 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322406.1 4807499 D 293826 CDS YP_001322407.1 150392358 5314843 complement(4808305..4808643) 1 NC_009633.1 hypothetical protein 4808643 5314843 Amet_4680 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322407.1 4808305 R 293826 CDS YP_001322408.1 150392359 5314844 4808905..4809447 1 NC_009633.1 hypothetical protein 4809447 5314844 Amet_4681 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322408.1 4808905 D 293826 CDS YP_001322409.1 150392360 5314845 complement(4809476..4810198) 1 NC_009633.1 hypothetical protein 4810198 5314845 Amet_4682 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322409.1 4809476 R 293826 CDS YP_001322410.1 150392361 5314846 complement(4810185..4810751) 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_4146 sigma-24 (FecI-like); ECF subfamily RNA polymerase sigma-24 factor 4810751 5314846 Amet_4683 Alkaliphilus metalliredigens QYMF ECF subfamily RNA polymerase sigma-24 factor YP_001322410.1 4810185 R 293826 CDS YP_001322411.1 150392362 5314847 4810893..4812446 1 NC_009633.1 PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22); integrase catalytic subunit 4812446 5314847 Amet_4684 Alkaliphilus metalliredigens QYMF integrase catalytic subunit YP_001322411.1 4810893 D 293826 CDS YP_001322412.1 150392363 5314848 4812434..4813177 1 NC_009633.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein; IstB ATP binding domain-containing protein 4813177 5314848 Amet_4685 Alkaliphilus metalliredigens QYMF IstB ATP binding domain-containing protein YP_001322412.1 4812434 D 293826 CDS YP_001322413.1 150392364 5314849 4813181..4813390 1 NC_009633.1 hypothetical protein 4813390 5314849 Amet_4686 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322413.1 4813181 D 293826 CDS YP_001322414.1 150392365 5314850 complement(4813776..4814594) 1 NC_009633.1 PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_1827 copper amine oxidase-like protein; copper amine oxidase domain-containing protein 4814594 5314850 Amet_4687 Alkaliphilus metalliredigens QYMF copper amine oxidase domain-containing protein YP_001322414.1 4813776 R 293826 CDS YP_001322415.1 150392366 5314851 complement(4814681..4815112) 1 NC_009633.1 hypothetical protein 4815112 5314851 Amet_4688 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322415.1 4814681 R 293826 CDS YP_001322416.1 150392367 5314852 complement(4815113..4815607) 1 NC_009633.1 hypothetical protein 4815607 5314852 Amet_4689 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322416.1 4815113 R 293826 CDS YP_001322417.1 150392368 5314853 complement(4816306..4816959) 1 NC_009633.1 hypothetical protein 4816959 5314853 Amet_4690 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322417.1 4816306 R 293826 CDS YP_001322418.1 150392369 5314854 4817327..4817836 1 NC_009633.1 hypothetical protein 4817836 5314854 Amet_4691 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322418.1 4817327 D 293826 CDS YP_001322419.1 150392370 5314855 complement(4817865..4818587) 1 NC_009633.1 hypothetical protein 4818587 5314855 Amet_4692 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322419.1 4817865 R 293826 CDS YP_001322420.1 150392371 5314856 complement(4818574..4819140) 1 NC_009633.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: btk:BT9727_4602 possible RNA polymerase sigma factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 4819140 5314856 Amet_4693 Alkaliphilus metalliredigens QYMF ECF subfamily RNA polymerase sigma-24 factor YP_001322420.1 4818574 R 293826 CDS YP_001322421.1 150392372 5314857 complement(4820133..4820759) 1 NC_009633.1 hypothetical protein 4820759 5314857 Amet_4694 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322421.1 4820133 R 293826 CDS YP_001322422.1 150392373 5314858 complement(4820955..4823135) 1 NC_009633.1 TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: ctc:CTC02090 ATP-dependent DNA helicase recQ; ATP-dependent DNA helicase RecQ 4823135 5314858 Amet_4695 Alkaliphilus metalliredigens QYMF ATP-dependent DNA helicase RecQ YP_001322422.1 4820955 R 293826 CDS YP_001322423.1 150392374 5314859 complement(4823289..4823672) 1 NC_009633.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cpr:CPR_0440 lactoylglutathione lyase; glyoxalase/bleomycin resistance protein/dioxygenase 4823672 5314859 Amet_4696 Alkaliphilus metalliredigens QYMF glyoxalase/bleomycin resistance protein/dioxygenase YP_001322423.1 4823289 R 293826 CDS YP_001322424.1 150392375 5314860 4824262..4824477 1 NC_009633.1 hypothetical protein 4824477 5314860 Amet_4697 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322424.1 4824262 D 293826 CDS YP_001322425.1 150392376 5314861 complement(4824557..4825264) 1 NC_009633.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: ctc:CTC00155 tRNA pseudouridine synthase A; RNA-binding S4 domain-containing protein 4825264 5314861 Amet_4698 Alkaliphilus metalliredigens QYMF RNA-binding S4 domain-containing protein YP_001322425.1 4824557 R 293826 CDS YP_001322426.1 150392377 5314862 complement(4825285..4826448) 1 NC_009633.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bsu:BG12963 similar to RNA helicase; DEAD/DEAH box helicase 4826448 5314862 Amet_4699 Alkaliphilus metalliredigens QYMF DEAD/DEAH box helicase YP_001322426.1 4825285 R 293826 CDS YP_001322427.1 150392378 5314863 complement(4826546..4826734) 1 NC_009633.1 hypothetical protein 4826734 5314863 Amet_4700 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322427.1 4826546 R 293826 CDS YP_001322428.1 150392379 5314864 complement(4826814..4826972) 1 NC_009633.1 hypothetical protein 4826972 5314864 Amet_4701 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322428.1 4826814 R 293826 CDS YP_001322429.1 150392380 5314865 complement(4826980..4827909) 1 NC_009633.1 KEGG: tko:TK0479 hypothetical protein; hypothetical protein 4827909 5314865 Amet_4702 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322429.1 4826980 R 293826 CDS YP_001322430.1 150392381 5314866 4828533..4829519 1 NC_009633.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: afu:AF0635 immunogenic protein; TRAP transporter solute receptor TAXI family protein 4829519 5314866 Amet_4703 Alkaliphilus metalliredigens QYMF TRAP transporter solute receptor TAXI family protein YP_001322430.1 4828533 D 293826 CDS YP_001322431.1 150392382 5314867 4829503..4830042 1 NC_009633.1 PFAM: Domain of unknown function DUF1850; KEGG: sfu:Sfum_3722 hypothetical protein; hypothetical protein 4830042 5314867 Amet_4704 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322431.1 4829503 D 293826 CDS YP_001322432.1 150392383 5314868 4830045..4832024 1 NC_009633.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bha:BH2945 hypothetical protein; TRAP transporter, 4TM/12TM fusion protein 4832024 5314868 Amet_4705 Alkaliphilus metalliredigens QYMF TRAP transporter, 4TM/12TM fusion protein YP_001322432.1 4830045 D 293826 CDS YP_001322433.1 150392384 5314869 complement(4832182..4832868) 1 NC_009633.1 SMART: Rhodanese domain protein; rhodanese domain-containing protein 4832868 5314869 Amet_4706 Alkaliphilus metalliredigens QYMF rhodanese domain-containing protein YP_001322433.1 4832182 R 293826 CDS YP_001322434.1 150392385 5314870 complement(4832896..4833627) 1 NC_009633.1 hypothetical protein 4833627 5314870 Amet_4707 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322434.1 4832896 R 293826 CDS YP_001322435.1 150392386 5314871 4833996..4834886 1 NC_009633.1 PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cno:NT01CX_0310 transcriptional regulators, LysR family; LysR family transcriptional regulator 4834886 5314871 Amet_4708 Alkaliphilus metalliredigens QYMF LysR family transcriptional regulator YP_001322435.1 4833996 D 293826 CDS YP_001322436.1 150392387 5314872 complement(4834992..4835510) 1 NC_009633.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: ctc:CTC01176 membrane spanning protein; hypothetical protein 4835510 5314872 Amet_4709 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322436.1 4834992 R 293826 CDS YP_001322437.1 150392388 5314873 complement(4835534..4835761) 1 NC_009633.1 PFAM: SirA family protein; KEGG: cno:NT01CX_0312 uncharacterized protein family UPF0033 superfamily; SirA family protein 4835761 5314873 Amet_4710 Alkaliphilus metalliredigens QYMF SirA family protein YP_001322437.1 4835534 R 293826 CDS YP_001322438.1 150392389 5314874 complement(4835772..4836470) 1 NC_009633.1 PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: cno:NT01CX_0313 putative transporter; hypothetical protein 4836470 5314874 Amet_4711 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322438.1 4835772 R 293826 CDS YP_001322439.1 150392390 5314875 complement(4836688..4836864) 1 NC_009633.1 KEGG: ctc:CTC00153 transcriptional regulatory protein; hypothetical protein 4836864 5314875 Amet_4712 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322439.1 4836688 R 293826 CDS YP_001322440.1 150392391 5314876 4836982..4838172 1 NC_009633.1 KEGG: ctc:CTC00154 hypothetical protein; hypothetical protein 4838172 5314876 Amet_4713 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322440.1 4836982 D 293826 CDS YP_001322441.1 150392392 5314877 complement(4838295..4839218) 1 NC_009633.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: bch:Bcen2424_2564 protein of unknown function DUF6, transmembrane; hypothetical protein 4839218 5314877 Amet_4714 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322441.1 4838295 R 293826 CDS YP_001322442.1 150392393 5314878 complement(4839232..4839642) 1 NC_009633.1 KEGG: tte:TTE2425 hypothetical protein; hypothetical protein 4839642 5314878 Amet_4715 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322442.1 4839232 R 293826 CDS YP_001322443.1 150392394 5314879 4840225..4840440 1 NC_009633.1 hypothetical protein 4840440 5314879 Amet_4716 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322443.1 4840225 D 293826 CDS YP_001322444.1 150392395 5314880 complement(4840487..4842487) 1 NC_009633.1 PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC01857 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 4842487 5314880 Amet_4717 Alkaliphilus metalliredigens QYMF methyl-accepting chemotaxis sensory transducer YP_001322444.1 4840487 R 293826 CDS YP_001322445.1 150392396 5314881 complement(4843019..4843774) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH2078 nickel transport system ATP-binding protein; ABC transporter-like protein 4843774 5314881 Amet_4718 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001322445.1 4843019 R 293826 CDS YP_001322446.1 150392397 5314882 complement(4843749..4844594) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH2077 nickel transport system ATP-binding protein; ABC transporter-like protein 4844594 5314882 Amet_4719 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001322446.1 4843749 R 293826 CDS YP_001322447.1 150392398 5314883 complement(4844557..4845435) 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0986 oligopeptide ABC transporter permease; binding-protein-dependent transport system inner membrane protein 4845435 5314883 Amet_4720 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001322447.1 4844557 R 293826 CDS YP_001322448.1 150392399 5314884 complement(4845437..4846366) 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0985 nickel transport system permease; binding-protein-dependent transport system inner membrane protein 4846366 5314884 Amet_4721 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001322448.1 4845437 R 293826 CDS YP_001322449.1 150392400 5314885 complement(4846450..4848051) 1 NC_009633.1 TIGRFAM: nickel ABC transporter, periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein, family 5; KEGG: wsu:WS0982 putative nikA protein; nickel ABC transporter periplasmic nickel-binding protein 4848051 5314885 Amet_4722 Alkaliphilus metalliredigens QYMF nickel ABC transporter periplasmic nickel-binding protein YP_001322449.1 4846450 R 293826 CDS YP_001322450.1 150392401 5314886 4848683..4849858 1 NC_009633.1 PFAM: major facilitator superfamily MFS_1; KEGG: dsy:DSY3748 hypothetical protein; major facilitator superfamily transporter 4849858 5314886 Amet_4723 Alkaliphilus metalliredigens QYMF major facilitator superfamily transporter YP_001322450.1 4848683 D 293826 CDS YP_001322451.1 150392402 5314887 complement(4850071..4851000) 1 NC_009633.1 PFAM: phosphoesterase, PA-phosphatase related; KEGG: sus:Acid_5127 phosphoesterase, PA-phosphatase related; PA-phosphatase-like phosphoesterase 4851000 5314887 Amet_4724 Alkaliphilus metalliredigens QYMF PA-phosphatase-like phosphoesterase YP_001322451.1 4850071 R 293826 CDS YP_001322452.1 150392403 5314888 complement(4851096..4851962) 1 NC_009633.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bha:BH3305 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 4851962 5314888 Amet_4725 Alkaliphilus metalliredigens QYMF glyoxalase/bleomycin resistance protein/dioxygenase YP_001322452.1 4851096 R 293826 CDS YP_001322453.1 150392404 5314889 complement(4852038..4852484) 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY0298 hypothetical protein; N-acetyltransferase GCN5 4852484 5314889 Amet_4726 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001322453.1 4852038 R 293826 CDS YP_001322454.1 150392405 5314890 complement(4852626..4854029) 1 NC_009633.1 PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: btl:BALH_2995 transcriptional regulator, GntR family; GntR family transcriptional regulator 4854029 5314890 Amet_4727 Alkaliphilus metalliredigens QYMF GntR family transcriptional regulator YP_001322454.1 4852626 R 293826 CDS YP_001322455.1 150392406 5314891 4854146..4855087 1 NC_009633.1 PFAM: protein of unknown function DUF6, transmembrane; KEGG: bha:BH0390 hypothetical protein; hypothetical protein 4855087 5314891 Amet_4728 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322455.1 4854146 D 293826 CDS YP_001322456.1 150392407 5314892 4855295..4855951 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC1506 response regulator (CheY-like receiver domain and a HTH); two component transcriptional regulator 4855951 5314892 Amet_4729 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001322456.1 4855295 D 293826 CDS YP_001322457.1 150392408 5314893 4855948..4857393 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: cac:CAC1507 sensory transduction histidine kinase (with HAMP domain); integral membrane sensor signal transduction histidine kinase 4857393 5314893 Amet_4730 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001322457.1 4855948 D 293826 CDS YP_001322458.1 150392409 5314894 4857441..4858313 1 NC_009633.1 hypothetical protein 4858313 5314894 Amet_4731 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322458.1 4857441 D 293826 CDS YP_001322459.1 150392410 5314895 4858600..4858890 1 NC_009633.1 PFAM: transposase IS3/IS911 family protein; KEGG: bha:BH3445 transposase (05); transposase IS3/IS911 family protein 4858890 5314895 Amet_4732 Alkaliphilus metalliredigens QYMF transposase IS3/IS911 family protein YP_001322459.1 4858600 D 293826 CDS YP_001322460.1 150392411 5314898 complement(4860463..4861755) 1 NC_009633.1 PFAM: peptidase M56, BlaR1; KEGG: swo:Swol_0431 antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component-like protein; peptidase M56, BlaR1 4861755 5314898 Amet_4735 Alkaliphilus metalliredigens QYMF peptidase M56, BlaR1 YP_001322460.1 4860463 R 293826 CDS YP_001322461.1 150392412 5314899 complement(4861766..4862125) 1 NC_009633.1 PFAM: Penicillinase repressor; KEGG: swo:Swol_0429 transcriptional repressor, CopY family; CopY family transcriptional regulator 4862125 5314899 Amet_4736 Alkaliphilus metalliredigens QYMF CopY family transcriptional regulator YP_001322461.1 4861766 R 293826 CDS YP_001322462.1 150392413 5314900 complement(4862248..4862847) 1 NC_009633.1 hypothetical protein 4862847 5314900 Amet_4737 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322462.1 4862248 R 293826 CDS YP_001322463.1 150392414 5314901 complement(4863165..4864277) 1 NC_009633.1 PFAM: ABC transporter related; TOBE domain protein; transport-associated protein OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein; ABC transporter-like protein 4864277 5314901 Amet_4738 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001322463.1 4863165 R 293826 CDS YP_001322464.1 150392415 5314902 complement(4864405..4866765) 1 NC_009633.1 PFAM: extracellular solute-binding protein, family 1; KEGG: dsy:DSY1083 hypothetical protein; extracellular solute-binding protein 4866765 5314902 Amet_4739 Alkaliphilus metalliredigens QYMF extracellular solute-binding protein YP_001322464.1 4864405 R 293826 CDS YP_001322465.1 150392416 5314903 complement(4866755..4868227) 1 NC_009633.1 KEGG: dsy:DSY1081 hypothetical protein; hypothetical protein 4868227 5314903 Amet_4740 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322465.1 4866755 R 293826 CDS YP_001322466.1 150392417 5314904 complement(4868242..4869588) 1 NC_009633.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dsy:DSY1080 hypothetical protein; RND family efflux transporter MFP subunit 4869588 5314904 Amet_4741 Alkaliphilus metalliredigens QYMF RND family efflux transporter MFP subunit YP_001322466.1 4868242 R 293826 CDS YP_001322467.1 150392418 5314905 complement(4869657..4870553) 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1079 hypothetical protein; binding-protein-dependent transport system inner membrane protein 4870553 5314905 Amet_4742 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001322467.1 4869657 R 293826 CDS YP_001322468.1 150392419 5314906 complement(4870561..4871442) 1 NC_009633.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1078 hypothetical protein; binding-protein-dependent transport system inner membrane protein 4871442 5314906 Amet_4743 Alkaliphilus metalliredigens QYMF binding-protein-dependent transport system inner membrane protein YP_001322468.1 4870561 R 293826 CDS YP_001322469.1 150392420 5314907 complement(4871676..4872341) 1 NC_009633.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bad:BAD_0931 ABC transporter domain protein; ABC transporter-like protein 4872341 5314907 Amet_4744 Alkaliphilus metalliredigens QYMF ABC transporter-like protein YP_001322469.1 4871676 R 293826 CDS YP_001322470.1 150392421 5314908 complement(4872355..4873767) 1 NC_009633.1 PFAM: protein of unknown function DUF214; KEGG: smu:SMU.1093 putative ABC transporter, permease protein; hypothetical protein 4873767 5314908 Amet_4745 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322470.1 4872355 R 293826 CDS YP_001322471.1 150392422 5314909 complement(4874034..4875182) 1 NC_009633.1 PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE1017 sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 4875182 5314909 Amet_4746 Alkaliphilus metalliredigens QYMF integral membrane sensor signal transduction histidine kinase YP_001322471.1 4874034 R 293826 CDS YP_001322472.1 150392423 5314910 complement(4875179..4875856) 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ctc:CTC01482 transcriptional activator protein; two component transcriptional regulator 4875856 5314910 Amet_4747 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001322472.1 4875179 R 293826 CDS YP_001322473.1 150392424 5314911 complement(4875885..4876058) 1 NC_009633.1 Contains selenocysteine; hypothetical protein 4876058 5314911 Amet_4748 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322473.1 4875885 R 293826 CDS YP_001322474.1 150392425 5314912 complement(4876287..4876766) 1 NC_009633.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 4876766 5314912 Amet_4749 Alkaliphilus metalliredigens QYMF rRNA large subunit methyltransferase YP_001322474.1 4876287 R 293826 CDS YP_001322475.1 150392426 5314913 complement(4876811..4876978) 1 NC_009633.1 KEGG: tte:TTE2682 hypothetical protein; hypothetical protein 4876978 5314913 Amet_4750 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322475.1 4876811 R 293826 CDS YP_001322476.1 150392427 5314914 complement(4877237..4878448) 1 NC_009633.1 PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: tte:TTE2683 trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain; 2-alkenal reductase 4878448 5314914 Amet_4751 Alkaliphilus metalliredigens QYMF 2-alkenal reductase YP_001322476.1 4877237 R 293826 CDS YP_001322477.1 150392428 5314915 complement(4878486..4879280) 1 NC_009633.1 PFAM: beta-lactamase domain protein; KEGG: cth:Cthe_2327 beta-lactamase-like protein; beta-lactamase domain-containing protein 4879280 5314915 Amet_4752 Alkaliphilus metalliredigens QYMF beta-lactamase domain-containing protein YP_001322477.1 4878486 R 293826 CDS YP_001322478.1 150392429 5314916 complement(4879296..4880552) 1 NC_009633.1 TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: cno:NT01CX_0948 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 4880552 5314916 Amet_4753 Alkaliphilus metalliredigens QYMF UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001322478.1 4879296 R 293826 CDS YP_001322479.1 150392430 5314917 complement(4880899..4881786) 1 NC_009633.1 KEGG: tte:TTE2685 hypothetical protein; hypothetical protein 4881786 5314917 Amet_4754 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322479.1 4880899 R 293826 CDS YP_001322480.1 150392431 5314918 complement(4881930..4883393) 1 NC_009633.1 KEGG: sep:SE0020 hypothetical protein; hypothetical protein 4883393 5314918 Amet_4755 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322480.1 4881930 R 293826 CDS YP_001322481.1 150392432 5314919 complement(4883414..4883935) 1 NC_009633.1 hypothetical protein 4883935 5314919 Amet_4756 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322481.1 4883414 R 293826 CDS YP_001322482.1 150392433 5314920 complement(4884022..4885821) 1 NC_009633.1 KEGG: tte:TTE2688 sensory transduction histidine kinases; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 4885821 5314920 Amet_4757 Alkaliphilus metalliredigens QYMF multi-sensor signal transduction histidine kinase YP_001322482.1 4884022 R 293826 CDS YP_001322483.1 150392434 5314921 complement(4885824..4886513) 1 NC_009633.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_2333 two component transcriptional regulator, winged helix family; two component transcriptional regulator 4886513 5314921 Amet_4758 Alkaliphilus metalliredigens QYMF two component transcriptional regulator YP_001322483.1 4885824 R 293826 CDS YP_001322484.1 150392435 5314922 complement(4886624..4887436) 1 NC_009633.1 KEGG: tte:TTE2690 hypothetical protein; hypothetical protein 4887436 5314922 Amet_4759 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322484.1 4886624 R 293826 CDS YP_001322485.1 150392436 5314923 4887622..4888914 1 NC_009633.1 PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: oih:OB2375 intracellular alkaline serine proteinase; peptidase S8/S53 subtilisin kexin sedolisin 4888914 5314923 Amet_4760 Alkaliphilus metalliredigens QYMF peptidase S8/S53 subtilisin kexin sedolisin YP_001322485.1 4887622 D 293826 CDS YP_001322486.1 150392437 5314924 complement(4889038..4890483) 1 NC_009633.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; G5 domain protein; KEGG: tte:TTE2691 membrane proteins related to metalloendopeptidase; peptidase M23B 4890483 5314924 Amet_4761 Alkaliphilus metalliredigens QYMF peptidase M23B YP_001322486.1 4889038 R 293826 CDS YP_001322487.1 150392438 5314925 complement(4890707..4892215) 1 NC_009633.1 PFAM: Peptidase M1, membrane alanine aminopeptidase-like; KEGG: tte:TTE2694 aminopeptidase N; peptidase M1, membrane alanine aminopeptidase-like protein 4892215 5314925 Amet_4762 Alkaliphilus metalliredigens QYMF peptidase M1, membrane alanine aminopeptidase-like protein YP_001322487.1 4890707 R 293826 CDS YP_001322488.1 150392439 5314926 4892453..4893526 1 NC_009633.1 TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: ctc:CTC00124 DNA replication protein DnaD; primosome subunit DnaD 4893526 5314926 Amet_4763 Alkaliphilus metalliredigens QYMF primosome subunit DnaD YP_001322488.1 4892453 D 293826 CDS YP_001322489.1 150392440 5314927 4893540..4894517 1 NC_009633.1 acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 4894517 5314927 Amet_4764 Alkaliphilus metalliredigens QYMF DNA replication protein DnaC YP_001322489.1 4893540 D 293826 CDS YP_001322490.1 150392441 5314930 complement(4894982..4896265) 1 NC_009633.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 4896265 5314930 Amet_4765 Alkaliphilus metalliredigens QYMF adenylosuccinate synthetase YP_001322490.1 4894982 R 293826 CDS YP_001322491.1 150392442 5314931 complement(4896500..4896706) 1 NC_009633.1 Contains selenocysteine; KEGG: cth:Cthe_3092 conserved hypothetical protein, CF-27 family; hypothetical protein 4896706 5314931 Amet_4766 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322491.1 4896500 R 293826 CDS YP_001322492.1 150392443 5314932 complement(4896923..4897522) 1 NC_009633.1 PFAM: GCN5-related N-acetyltransferase; KEGG: tma:TM0968 hypothetical protein; N-acetyltransferase GCN5 4897522 5314932 Amet_4767 Alkaliphilus metalliredigens QYMF N-acetyltransferase GCN5 YP_001322492.1 4896923 R 293826 CDS YP_001322493.1 150392444 5314933 complement(4897577..4898920) 1 NC_009633.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; KEGG: cth:Cthe_2256 replicative DNA helicase; replicative DNA helicase 4898920 5314933 Amet_4768 Alkaliphilus metalliredigens QYMF replicative DNA helicase YP_001322493.1 4897577 R 293826 CDS YP_001322494.1 150392445 5314934 complement(4899100..4899549) 1 NC_009633.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 4899549 rplI 5314934 rplI Alkaliphilus metalliredigens QYMF 50S ribosomal protein L9 YP_001322494.1 4899100 R 293826 CDS YP_001322495.1 150392446 5314935 complement(4899546..4901558) 1 NC_009633.1 PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: cth:Cthe_2258 phosphoesterase, RecJ-like protein; phosphoesterase domain-containing protein 4901558 5314935 Amet_4770 Alkaliphilus metalliredigens QYMF phosphoesterase domain-containing protein YP_001322495.1 4899546 R 293826 CDS YP_001322496.1 150392447 5314936 complement(4901591..4902520) 1 NC_009633.1 KEGG: bld:BLi04355 YybS; hypothetical protein 4902520 5314936 Amet_4771 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322496.1 4901591 R 293826 CDS YP_001322497.1 150392448 5314937 complement(4902540..4902869) 1 NC_009633.1 KEGG: cth:Cthe_2259 hypothetical protein; hypothetical protein 4902869 5314937 Amet_4772 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322497.1 4902540 R 293826 CDS YP_001322498.1 150392449 5314938 complement(4902998..4904008) 1 NC_009633.1 KEGG: cno:NT01CX_1247 hypothetical protein; hypothetical protein 4904008 5314938 Amet_4773 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322498.1 4902998 R 293826 CDS YP_001322499.1 150392450 5314939 complement(4904133..4904399) 1 NC_009633.1 PFAM: sigmaK-factor processing regulatory BofA; KEGG: cth:Cthe_2389 sigmaK-factor processing regulatory BofA; sigmaK-factor processing regulatory BofA 4904399 5314939 Amet_4774 Alkaliphilus metalliredigens QYMF sigmaK-factor processing regulatory BofA YP_001322499.1 4904133 R 293826 CDS YP_001322500.1 150392451 5314940 complement(4904631..4904954) 1 NC_009633.1 KEGG: tte:TTE0043 hypothetical protein; hypothetical protein 4904954 5314940 Amet_4775 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322500.1 4904631 R 293826 CDS YP_001322501.1 150392452 5314941 complement(4905027..4906361) 1 NC_009633.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: bha:BH2629 PhoH-like ATPase; PhoH family protein 4906361 5314941 Amet_4776 Alkaliphilus metalliredigens QYMF PhoH family protein YP_001322501.1 4905027 R 293826 CDS YP_001322502.1 150392453 5314942 complement(4906615..4907775) 1 NC_009633.1 PFAM: sodium/hydrogen exchanger; KEGG: ctc:CTC01423 putative Na(+)/H(+) antiporter; sodium/hydrogen exchanger 4907775 5314942 Amet_4777 Alkaliphilus metalliredigens QYMF sodium/hydrogen exchanger YP_001322502.1 4906615 R 293826 CDS YP_001322503.1 150392454 5314943 complement(4907772..4908125) 1 NC_009633.1 KEGG: cth:Cthe_1401 hypothetical protein; hypothetical protein 4908125 5314943 Amet_4778 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322503.1 4907772 R 293826 CDS YP_001322504.1 150392455 5314944 complement(4908407..4909006) 1 NC_009633.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 4909006 recR 5314944 recR Alkaliphilus metalliredigens QYMF recombination protein RecR YP_001322504.1 4908407 R 293826 CDS YP_001322505.1 150392456 5314945 complement(4909037..4909381) 1 NC_009633.1 PFAM: conserved hypothetical protein 103; KEGG: cno:NT01CX_0824 conserved hypothetical protein TIGR00103; hypothetical protein 4909381 5314945 Amet_4780 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322505.1 4909037 R 293826 CDS YP_001322506.1 150392457 5314946 complement(4909441..4911120) 1 NC_009633.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 4911120 5314946 Amet_4781 Alkaliphilus metalliredigens QYMF DNA polymerase III subunits gamma and tau YP_001322506.1 4909441 R 293826 CDS YP_001322507.1 150392458 5314947 complement(4911192..4911881) 1 NC_009633.1 KEGG: cth:Cthe_2712 hypothetical protein; hypothetical protein 4911881 5314947 Amet_4782 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322507.1 4911192 R 293826 CDS YP_001322508.1 150392459 5314948 complement(4911896..4913014) 1 NC_009633.1 KEGG: cth:Cthe_2711 hypothetical protein; hypothetical protein 4913014 5314948 Amet_4783 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322508.1 4911896 R 293826 CDS YP_001322509.1 150392460 5314949 complement(4913016..4914104) 1 NC_009633.1 KEGG: cth:Cthe_2710 uncharacterized membrane protein-like protein; hypothetical protein 4914104 5314949 Amet_4784 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322509.1 4913016 R 293826 CDS YP_001322510.1 150392461 5314950 4914362..4914976 1 NC_009633.1 PFAM: protein of unknown function DUF1256; KEGG: cth:Cthe_2165 protein of unknown function DUF1256; hypothetical protein 4914976 5314950 Amet_4785 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322510.1 4914362 D 293826 CDS YP_001322511.1 150392462 5314951 complement(4915092..4915352) 1 NC_009633.1 KEGG: cth:Cthe_0718 hypothetical protein; hypothetical protein 4915352 5314951 Amet_4786 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322511.1 4915092 R 293826 CDS YP_001322512.1 150392463 5314952 complement(4915373..4916269) 1 NC_009633.1 PFAM: diacylglycerol kinase, catalytic region; KEGG: tte:TTE2787 hypothetical protein; diacylglycerol kinase catalytic subunit 4916269 5314952 Amet_4787 Alkaliphilus metalliredigens QYMF diacylglycerol kinase catalytic subunit YP_001322512.1 4915373 R 293826 CDS YP_001322513.1 150392464 5314953 complement(4916279..4916827) 1 NC_009633.1 KEGG: cth:Cthe_2379 hypothetical protein; hypothetical protein 4916827 5314953 Amet_4788 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322513.1 4916279 R 293826 CDS YP_001322514.1 150392465 5314954 complement(4917022..4918167) 1 NC_009633.1 TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tte:TTE2789 selenocysteine lyase; cysteine desulfurase 4918167 5314954 Amet_4789 Alkaliphilus metalliredigens QYMF cysteine desulfurase YP_001322514.1 4917022 R 293826 CDS YP_001322515.1 150392466 5314955 complement(4918257..4919171) 1 NC_009633.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: tte:TTE0729 predicted epimerase, PhzC/PhzF homolog; PhzF family phenazine biosynthesis protein 4919171 5314955 Amet_4790 Alkaliphilus metalliredigens QYMF PhzF family phenazine biosynthesis protein YP_001322515.1 4918257 R 293826 CDS YP_001322516.1 150392467 5314956 complement(4919218..4920087) 1 NC_009633.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: tte:TTE2790 predicted Transcriptional regulator; parB-like partition protein 4920087 5314956 Amet_4791 Alkaliphilus metalliredigens QYMF parB-like partition protein YP_001322516.1 4919218 R 293826 CDS YP_001322517.1 150392468 5314957 complement(4920088..4920861) 1 NC_009633.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: cth:Cthe_2377 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 4920861 5314957 Amet_4792 Alkaliphilus metalliredigens QYMF cobyrinic acid a,c-diamide synthase YP_001322517.1 4920088 R 293826 CDS YP_001322518.1 150392469 5314958 4921040..4921309 1 NC_009633.1 PFAM: protein of unknown function UPF0016; KEGG: gvi:gsr0120 hypothetical protein; hypothetical protein 4921309 5314958 Amet_4793 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322518.1 4921040 D 293826 CDS YP_001322519.1 150392470 5314959 complement(4921375..4922187) 1 NC_009633.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cth:Cthe_2362 ParB-like partition protein; parB-like partition protein 4922187 5314959 Amet_4794 Alkaliphilus metalliredigens QYMF parB-like partition protein YP_001322519.1 4921375 R 293826 CDS YP_001322520.1 150392471 5314960 complement(4922311..4923030) 1 NC_009633.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 4923030 gidB 5314960 gidB Alkaliphilus metalliredigens QYMF 16S rRNA methyltransferase GidB YP_001322520.1 4922311 R 293826 CDS YP_001322521.1 150392472 5314961 complement(4923030..4924922) 1 NC_009633.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 4924922 5314961 Amet_4796 Alkaliphilus metalliredigens QYMF tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001322521.1 4923030 R 293826 CDS YP_001322522.1 150392473 5314962 complement(4925074..4926459) 1 NC_009633.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 4926459 trmE 5314962 trmE Alkaliphilus metalliredigens QYMF tRNA modification GTPase TrmE YP_001322522.1 4925074 R 293826 CDS YP_001322523.1 150392474 5314963 complement(4926837..4927460) 1 NC_009633.1 PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: cpe:CPE2656 SpoIIIJ-associated protein; single-stranded nucleic acid binding R3H domain-containing protein 4927460 5314963 Amet_4798 Alkaliphilus metalliredigens QYMF single-stranded nucleic acid binding R3H domain-containing protein YP_001322523.1 4926837 R 293826 CDS YP_001322524.1 150392475 5314964 complement(4927462..4928124) 1 NC_009633.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: mta:Moth_2521 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein 4928124 5314964 Amet_4799 Alkaliphilus metalliredigens QYMF 60 kDa inner membrane insertion protein YP_001322524.1 4927462 R 293826 CDS YP_001322525.1 150392476 5314965 complement(4928154..4928363) 1 NC_009633.1 PFAM: protein of unknown function DUF37; KEGG: bcl:ABC2506 hypothetical protein; hypothetical protein 4928363 5314965 Amet_4800 Alkaliphilus metalliredigens QYMF hypothetical protein YP_001322525.1 4928154 R 293826 CDS YP_001322526.1 150392477 5314966 complement(4928426..4928761) 1 NC_009633.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 4928761 rnpA 5314966 rnpA Alkaliphilus metalliredigens QYMF ribonuclease P YP_001322526.1 4928426 R 293826 CDS YP_001322527.1 150392478 5314967 complement(4928814..4928948) 1 NC_009633.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 4928948 rpmH 5314967 rpmH Alkaliphilus metalliredigens QYMF 50S ribosomal protein L34 YP_001322527.1 4928814 R 293826 CDS