-- dump date   	20140618_194253
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_001317903.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_001317904.1	binds the polymerase to DNA and acts as a sliding clamp
YP_001317905.1	PFAM: RNA-binding S4 domain protein; KEGG: cth:Cthe_2373 RNA-binding S4
YP_001317906.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_001317907.1	KEGG: cth:Cthe_2375 hypothetical protein
YP_001317908.1	KEGG: gka:GK0005 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II
YP_001317909.1	TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: chy:CHY_2704 DNA gyrase, A subunit
YP_001317910.1	TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cth:Cthe_2898 anti-sigma-factor antagonist
YP_001317911.1	KEGG: bcl:ABC0815 anti-sigma B factor
YP_001317912.1	TIGRFAM: phage transcriptional regulator, RinA family; RNA polymerase sigma-70; RNA polymerase sigma-B/F/G type; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: cth:Cthe_2900 RNA polymerase, sigma 28 subunit
YP_001317915.1	PFAM: protein of unknown function DUF988; KEGG: ctc:CTC02339 transporter
YP_001317916.1	KEGG: tma:TM1086 hypothetical protein
YP_001317917.1	PFAM: glycine cleavage system P-protein; KEGG: tte:TTE0294 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain
YP_001317918.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein
YP_001317919.1	TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; KEGG: cth:Cthe_2356 quinolinate synthetase complex, A subunit
YP_001317920.1	TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: cth:Cthe_2355 L-aspartate oxidase
YP_001317921.1	TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; KEGG: cth:Cthe_2354 nicotinate-nucleotide pyrophosphorylase
YP_001317922.1	PFAM: 3H domain protein; Helix-turn-helix, type 11 domain protein; KEGG: tte:TTE0520 hypothetical protein
YP_001317923.1	PFAM: phosphotransferase system, EIIC; KEGG: bha:BH3254 hypothetical protein
YP_001317924.1	PFAM: protein of unknown function UPF0182; KEGG: swo:Swol_1161 protein of unknown function UPF0182
YP_001317926.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001317928.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: gka:GK0016 hypothetical protein
YP_001317929.1	PFAM: SirA family protein; KEGG: swo:Swol_1887 SirA-like protein
YP_001317930.1	KEGG: tte:TTE1677 hypothetical protein
YP_001317931.1	PFAM: MscS Mechanosensitive ion channel; KEGG: tte:TTE2783 Small-conductance mechanosensitive channel
YP_001317932.1	PFAM: protein of unknown function DUF951; KEGG: cth:Cthe_2512 protein of unknown function DUF951
YP_001317933.1	PFAM: aminotransferase, class I and II; KEGG: mmp:MMP0096 aminotransferase (subgroup I)
YP_001317934.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_001317935.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: ctc:CTC00108 single-strand binding protein
YP_001317936.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_001317937.1	PFAM: YibE/F family protein; KEGG: cno:NT01CX_0212 conserved membrane protein, putative
YP_001317938.1	KEGG: cpf:CPF_0517 hypothetical protein
YP_001317939.1	TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: swo:Swol_0069 ribosomal protein L25
YP_001317940.1	TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: cpe:CPE1874 probable general stress protein
YP_001317941.1	TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rxy:Rxyl_2475 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
YP_001317942.1	PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; KEGG: bld:BLi00322 YcgA
YP_001317943.1	PFAM: amidohydrolase; Amidohydrolase 3; KEGG: pab:PAB0090 D-aminoacylase (aspartate, glutamate etc)
YP_001317944.1	TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bld:BLi00323 hypothetical protein
YP_001317945.1	PFAM: chemotaxis sensory transducer; KEGG: tte:TTE1777 methyl-accepting chemotaxis protein
YP_001317946.1	PFAM: protein of unknown function DUF156; KEGG: dsy:DSY4511 hypothetical protein
YP_001317947.1	PFAM: Heavy metal transport/detoxification protein; KEGG: dsy:DSY4509 hypothetical protein
YP_001317948.1	PFAM: aminodeoxychorismate lyase; KEGG: tte:TTE1255 predicted periplasmic solute-binding protein
YP_001317949.1	PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: sus:Acid_0749 UBA/ThiF-type NAD/FAD binding protein
YP_001317950.1	PFAM: SNARE associated Golgi protein; KEGG: cac:CAC0677 hypothetical protein
YP_001317951.1	KEGG: mta:Moth_2197 putative transcriptional regulator, AsnC family
YP_001317952.1	SMART: regulatory protein, AsnC/Lrp family; KEGG: mta:Moth_2198 putative transcriptional regulator, AsnC family
YP_001317953.1	PFAM: Radical SAM domain protein; KEGG: chy:CHY_1211 radical SAM domain protein
YP_001317954.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY2223 hypothetical protein
YP_001317955.1	PFAM: conserved hypothetical protein 698; KEGG: ter:Tery_0334 conserved hypothetical protein 698
YP_001317957.1	PFAM: SirA family protein; KEGG: gme:Gmet_1571 hypothetical protein
YP_001317958.1	TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: mta:Moth_1706 cysteine synthase A
YP_001317959.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: cac:CAC0102 O-acetylhomoserine (thiol)-lyase
YP_001317960.1	PFAM: glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; KEGG: cno:NT01CX_0264 glutamyl-tRNA reductase
YP_001317961.1	TIGRFAM: siroheme synthase; KEGG: gka:GK0404 siroheme synthase
YP_001317962.1	TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; KEGG: bsu:BG10342 porphobilinogen deaminase (hydroxymethylbilane synthase)
YP_001317963.1	TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dsy:DSY2224 hypothetical protein
YP_001317964.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_001317965.1	TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: chy:CHY_1212 glutamate-1-semialdehyde-2,1-aminomutase
YP_001317966.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: ppd:Ppro_1299 cobalamin (vitamin B12) biosynthesis CbiX protein
YP_001317967.1	TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: tte:TTE0375 Cobyrinic acid a,c-diamide synthase
YP_001317968.1	KEGG: tte:TTE0378 hypothetical protein
YP_001317969.1	KEGG: ctc:CTC00742 hypothetical protein
YP_001317970.1	PFAM: GHMP kinase; KEGG: lin:lin1134 hypothetical protein
YP_001317971.1	PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: cpr:CPR_1241 precorrin-8X methylmutase
YP_001317972.1	Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A
YP_001317973.1	TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: ctc:CTC00734 precorrin-6B methylase/decarboxylase cbiT/cbiE
YP_001317974.1	TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; KEGG: fnu:FN0964 precorrin-8W decarboxylase
YP_001317975.1	TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mta:Moth_1091 precorrin-2 C20-methyltransferase
YP_001317976.1	TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: fnu:FN0957 precorrin-4 C11-methyltransferase
YP_001317977.1	PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: fnu:FN0952 cobalamin biosynthesis protein G
YP_001317978.1	TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: gme:Gmet_0485 cobyric acid synthase CobQ:precorrin-3B C17-methyltransferase region
YP_001317979.1	TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK; KEGG: mta:Moth_1223 precorrin-6x reductase
YP_001317980.1	KEGG: ctc:CTC00217 hypothetical protein
YP_001317983.1	PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; Soluble liver antigen/liver pancreas antigen; KEGG: tte:TTE0093 Arginine/lysine/ornithine decarboxylases
YP_001317984.1	PFAM: thymidylate kinase; KEGG: lga:LGAS_0372 thymidylate kinase
YP_001317985.1	PFAM: protein of unknown function DUF970; KEGG: cac:CAC0299 protein from nitrogen regulatory protein P-II (GlnB) family, ortholog YAAQ B.subtilis
YP_001317986.1	TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: tte:TTE0097 ATPase involved in DNA replication
YP_001317987.1	PFAM: PSP1 domain protein; KEGG: ctc:CTC00222 tpl protein
YP_001317988.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ctc:CTC00146 thiol:disulfide interchange protein TlpA
YP_001317989.1	Heat shock-induced
YP_001317990.1	KEGG: cth:Cthe_2974 hypothetical protein
YP_001317992.1	PFAM: methyltransferase small; Methyltransferase type 11; KEGG: cth:Cthe_2102 methyltransferase small
YP_001317993.1	PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: tte:TTE0104 predicted methyltransferases
YP_001317994.1	TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cth:Cthe_2100 transcriptional regulator, AbrB family
YP_001317995.1	TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: tte:TTE0109 tRNA nucleotidyltransferase/poly(A) polymerase
YP_001317996.1	TIGRFAM: putative nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase and related; KEGG: dsy:DSY0787 nicotinate phosphoribosyltransferase
YP_001317997.1	PFAM: nucleoside recognition domain protein; KEGG: mta:Moth_1356 nucleoside recognition
YP_001317998.1	PFAM: nucleoside recognition domain protein; KEGG: ctc:CTC00239 spore maturation protein B
YP_001317999.1	PFAM: peptidase S58, DmpA; KEGG: cno:NT01CX_1082 peptidase family T4
YP_001318000.1	PFAM: Accessory gene regulator B; KEGG: sao:SAOUHSC_02261 accessory gene regulator protein B
YP_001318001.1	TIGRFAM: bacteriocin, lactococcin 972 family; KEGG: dsy:DSY2024 hypothetical protein
YP_001318002.1	KEGG: cpe:PCP08 hypothetical protein
YP_001318003.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC02098 transporter
YP_001318004.1	PFAM: ATP-binding region, ATPase domain protein; KEGG: swo:Swol_2401 signal transduction histidine kinase regulating citrate/malate metabolism
YP_001318005.1	PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: tte:TTE0561 response regulators of cell autolysis
YP_001318009.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: ctc:CTC00553 RNA polymerase sigma factor
YP_001318011.1	TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: t-RNA-binding domain protein; tRNA synthetase class I (M); KEGG: cth:Cthe_2096 methionyl-tRNA synthetase
YP_001318012.1	TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: cth:Cthe_2095 hydrolase, TatD family
YP_001318014.1	PFAM: protein of unknown function DUF1568; KEGG: tte:TTE2528 predicted transposase
YP_001318015.1	KEGG: swo:Swol_2283 hypothetical protein
YP_001318016.1	PFAM: IS66 Orf2 family protein; KEGG: swo:Swol_2282 IS66 Orf2 like
YP_001318017.1	PFAM: transposase IS66; KEGG: swo:Swol_2281 transposase and inactivated derivatives-like protein
YP_001318018.1	PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase
YP_001318019.1	KEGG: swo:Swol_2192 hypothetical protein
YP_001318023.1	PFAM: Accessory gene regulator B; KEGG: cth:Cthe_1310 accessory gene regulator B
YP_001318024.1	KEGG: swo:Swol_2198 transposase
YP_001318025.1	PFAM: protein of unknown function DUF1568; KEGG: tte:TTE2528 predicted transposase
YP_001318027.1	PFAM: regulatory protein, ArsR; KEGG: cth:Cthe_0245 transcriptional regulator, ArsR family
YP_001318028.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY0829 hypothetical protein
YP_001318029.1	PFAM: UV-endonuclease UvdE; Protein of unknown function DUF1722; KEGG: cno:NT01CX_0232 UV DNA damage endonuclease (UV-endonuclease) UvdE
YP_001318030.1	PFAM: regulatory protein GntR, HTH; KEGG: swo:Swol_1621 transcriptional regulator, GntR family
YP_001318031.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_1174 ABC transporter related
YP_001318032.1	KEGG: mta:Moth_1173 hypothetical protein
YP_001318033.1	PFAM: SCP-like extracellular protein; KEGG: cth:Cthe_0779 copper amine oxidase-like protein
YP_001318034.1	PFAM: protein of unknown function DUF348; 3D domain protein; G5 domain protein; KEGG: tte:TTE0112 hypothetical protein
YP_001318035.1	TIGRFAM: primase/topoisomerase like protein; PFAM: TOPRIM domain protein; SMART: Toprim sub domain protein; KEGG: ctc:CTC00246 DNA primase
YP_001318036.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_001318037.1	KEGG: ctc:CTC00249 hypothetical protein
YP_001318038.1	PFAM: sodium/calcium exchanger membrane region; KEGG: rfr:Rfer_1133 sodium/calcium exchanger membrane protein
YP_001318039.1	PFAM: Rhodanese domain protein; KEGG: chy:CHY_0566 rhodanese-like domain protein
YP_001318040.1	KEGG: mta:Moth_1874 hypothetical protein
YP_001318041.1	KEGG: cth:Cthe_0065 hypothetical protein
YP_001318043.1	KEGG: cac:CAC0449 hypothetical protein
YP_001318044.1	PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; short chain fatty acid transporter; KEGG: ctc:CTC01323 aminobenzoyl-glutamate transport protein
YP_001318045.1	PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; KEGG: ctc:CTC01323 aminobenzoyl-glutamate transport protein
YP_001318046.1	TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase M42 family protein; peptidase dimerisation domain protein; KEGG: cpe:CPE2463 probable peptidase
YP_001318047.1	PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: cth:Cthe_1918 Orn/Lys/Arg decarboxylase, major region
YP_001318048.1	TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tte:TTE0026 transcriptional regulator
YP_001318049.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_001318050.1	TIGRFAM: pur operon repressor; PFAM: phosphoribosyltransferase; purine repressor-like; KEGG: tte:TTE2574 purine operon repressor
YP_001318051.1	stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus
YP_001318052.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_001318053.1	TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; KEGG: cno:NT01CX_1015 ribose-phosphate pyrophosphokinase
YP_001318054.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_001318055.1	KEGG: tte:TTE2566 hypothetical protein
YP_001318056.1	TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: tte:TTE2565 Transcription-repair coupling factor - superfamily II helicase
YP_001318057.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: tte:TTE2564 parvulin-like peptidyl-prolyl isomerase
YP_001318058.1	TIGRFAM: transcriptional regulator, AbrB family; Sporulation stage V, protein T; PFAM: SpoVT/AbrB domain protein; KEGG: mta:Moth_0083 transcriptional regulator, AbrB family
YP_001318059.1	PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: swo:Swol_0081 stage V sporulation protein B
YP_001318060.1	TIGRFAM: MazG family protein; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; MazG nucleotide pyrophosphohydrolase; KEGG: cpr:CPR_2489 MazG family protein
YP_001318061.1	PFAM: histone family protein DNA-binding protein; KEGG: tte:TTE2453 Bacterial nucleoid DNA-binding protein
YP_001318062.1	PFAM: RNA-binding S4 domain protein; KEGG: cpf:CPF_2801 S4 domain protein
YP_001318063.1	KEGG: dsy:DSY3280 hypothetical protein
YP_001318064.1	TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: tte:TTE2451 sporulation protein and related proteins
YP_001318065.1	PFAM: YabP family protein; KEGG: tte:TTE2450 hypothetical protein
YP_001318066.1	TIGRFAM: Spore cortex biosynthesis protein YabQ; KEGG: tte:TTE2446 hypothetical protein
YP_001318067.1	PFAM: Septum formation initiator
YP_001318068.1	PFAM: RNA binding S1 domain protein; KEGG: cth:Cthe_2662 RNA binding S1
YP_001318069.1	KEGG: cth:Cthe_2681 serine phosphatase; TIGRFAM: Sporulation stage II, protein E; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein
YP_001318070.1	PFAM: helix-turn-helix domain protein; KEGG: tte:TTE2174 predicted transcriptional regulator
YP_001318071.1	SMART: helix-turn-helix domain protein; KEGG: tte:TTE2173 hypothetical protein
YP_001318073.1	TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; Peptidoglycan-binding domain 1 protein; peptidase S41; KEGG: cth:Cthe_1930 carboxyl-terminal protease
YP_001318074.1	PFAM: S-layer domain protein; KEGG: cth:Cthe_2384 S-layer-like domain containing protein
YP_001318076.1	PFAM: cell surface receptor IPT/TIG domain protein; Fibronectin, type III domain protein; KEGG: tte:TTE0165 hypothetical protein
YP_001318077.1	PFAM: S-layer domain protein; KEGG: tte:TTE0166 S-layer homology domain
YP_001318078.1	PFAM: S-layer domain protein; KEGG: tte:TTE0167 S-layer homology domain
YP_001318079.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_001318080.1	PFAM: copper amine oxidase domain protein; KEGG: mta:Moth_2343 copper amine oxidase-like
YP_001318081.1	KEGG: rno:690765 hypothetical protein LOC690765
YP_001318082.1	KEGG: swo:Swol_0134 hypothetical protein
YP_001318083.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3360 hypothetical protein
YP_001318084.1	PFAM: acriflavin resistance protein; KEGG: dsy:DSY3359 hypothetical protein
YP_001318085.1	PFAM: regulatory protein, TetR; KEGG: swo:Swol_0177 putative transcriptional regulator, TetR family
YP_001318086.1	PFAM: Spore coat protein CotH; KEGG: cth:Cthe_0239 cellulosome enzyme, dockerin type I
YP_001318087.1	PFAM: S-layer domain protein; KEGG: sth:STH3168 S-layer associated protein, putataive
YP_001318088.1	PFAM: lipopolysaccharide biosynthesis protein; KEGG: cth:Cthe_2347 lipopolysaccharide biosynthesis
YP_001318089.1	PFAM: TPR repeat-containing protein; O-antigen polymerase; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: tte:TTE0644 TPR-repeat-containing proteins
YP_001318090.1	PFAM: regulatory protein, MarR; KEGG: gme:Gmet_2889 hypothetical protein
YP_001318091.1	TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein, HI0074; KEGG: tte:TTE1987 hypothetical protein
YP_001318092.1	KEGG: tte:TTE1265 type IV pilus assembly protein PilA
YP_001318094.1	KEGG: rde:RD1_A0043 RC169
YP_001318095.1	PFAM: sugar transferase; KEGG: bha:BH3716 galactosyltransferase
YP_001318096.1	PFAM: Heparinase II/III family protein; KEGG: gme:Gmet_1501 heparinase II/III-like
YP_001318097.1	PFAM: glycosyl transferase, group 1; KEGG: gme:Gmet_1502 glycosyl transferase, group 1
YP_001318098.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility C-terminal domain; KEGG: pme:NATL1_08611 hypothetical protein
YP_001318099.1	PFAM: glycosyl transferase, group 1; KEGG: pab:PAB1604 LPS biosynthesis RfbU related protein
YP_001318100.1	PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase-like; KEGG: cpf:CPF_0468 UDP-glucose/GDP-mannose dehydrogenase family
YP_001318101.1	PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: spn:SP_0357 UDP-N-acetylglucosamine-2-epimerase
YP_001318102.1	KEGG: cth:Cthe_2340 UDP-glucose/GDP-mannose dehydrogenase
YP_001318103.1	PFAM: glycosyl transferase, group 1; KEGG: pac:PPA0673 putative glycosyl transferase group 1
YP_001318104.1	PFAM: O-antigen polymerase; KEGG: bsu:BG12692 biosynthesis of teichuronic acid, polymerization
YP_001318105.1	KEGG: bad:BAD_1383 hypothetical protein
YP_001318106.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dps:DPPB80 related to F420H2-dehydrogenase, beta subunit
YP_001318108.1	TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: tte:TTE0176 uncharacterized membrane protein, putative virulence factor
YP_001318109.1	KEGG: bfs:BF2224 hypothetical protein
YP_001318110.1	PFAM: protein of unknown function DUF1568; KEGG: swo:Swol_0164 transposase and inactivated derivatives-like protein
YP_001318111.1	TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tte:TTE0736 transcriptional regulator
YP_001318112.1	KEGG: dsy:DSY2001 hypothetical protein
YP_001318114.1	TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; KEGG: tte:TTE1455 predicted ATPase with chaperone activity
YP_001318115.1	TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: cth:Cthe_0459 DNA protecting protein DprA
YP_001318116.1	PFAM: AAA-4 family protein; KEGG: mbu:Mbur_0507 divergent AAA ATPase
YP_001318118.1	KEGG: stm:STM4489 putative DNA helicases
YP_001318119.1	TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; Propionate catabolism activator domain protein; ATPase associated with various cellular activities, AAA_5; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: chy:CHY_1254 sigma-54 dependent transcriptional regulator
YP_001318120.1	PFAM: type III effector Hrp-dependent outers; KEGG: mta:Moth_0726 type III effector Hrp-dependent outers
YP_001318121.1	PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: msu:MS0069 EutG protein
YP_001318122.1	TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; KEGG: mta:Moth_0727 4-hydroxythreonine-4-phosphate dehydrogenase
YP_001318123.1	TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: msu:MS0067 DapA protein
YP_001318124.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: eba:p2A97 hypothetical protein, putative periplasmic binding protein
YP_001318125.1	TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: dsy:DSY0650 hypothetical protein
YP_001318126.1	PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: tte:TTE0676 hypothetical protein
YP_001318127.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_2297 daunorubicin resistance ABC transporter ATP-binding subunit
YP_001318128.1	PFAM: ABC-2 type transporter; KEGG: mbu:Mbur_0388 ABC efflux pump, inner membrane subunit
YP_001318129.1	KEGG: cth:Cthe_2132 abortive infection protein, putative
YP_001318131.1	KEGG: bcz:BCZK4937 hypothetical protein
YP_001318132.1	KEGG: btl:BALH_4741 membrane protein
YP_001318133.1	KEGG: bat:BAS5094 hypothetical protein
YP_001318134.1	KEGG: dsy:DSY2129 hypothetical protein
YP_001318135.1	PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: tte:TTE0676 hypothetical protein
YP_001318137.1	KEGG: cth:Cthe_0703 hypothetical protein
YP_001318139.1	PFAM: CheC domain protein; KEGG: cac:CAC0586 CheX protein (uncharacterized ORF in chemotaxis operon)
YP_001318140.1	PFAM: response regulator receiver; KEGG: cac:CAC0585 N-terminal CheY reciever domain fused to C-terminal uncharacterized CheX-like domain
YP_001318141.1	PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: cac:CAC2821 methyl-accepting chemotaxis protein
YP_001318142.1	PFAM: microcompartments protein; KEGG: ctc:CTC02181 ethanolamine utilization protein eutS
YP_001318143.1	TIGRFAM: ethanolamine utilization protein, EutP; KEGG: ctc:CTC02180 ethanolamine utilization protein eutP
YP_001318144.1	PFAM: response regulator receiver; ANTAR domain protein; KEGG: ctc:CTC02179 ethanolamine utilization response regulator
YP_001318145.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, dimerisation/phosphoacceptor; KEGG: cac:CAC2720 sensory protein containing histidine kinase, PAS anf GAF domains
YP_001318146.1	ethanolamine utilization protein EutA
YP_001318147.1	PFAM: Ethanolamine ammonia lyase large subunit; KEGG: cpf:CPF_0891 ethanolamine ammonia-lyase, large subunit
YP_001318148.1	catalyzes the formation of acetaldehyde from ethanolamine
YP_001318149.1	PFAM: microcompartments protein; KEGG: fnu:FN0081 ethanolamine utilization protein eutL
YP_001318150.1	PFAM: microcompartments protein; KEGG: lmo:lmo1178 hypothetical protein
YP_001318151.1	TIGRFAM: acetaldehyde dehydrogenase (acetylating); KEGG: dde:Dde_3279 aldehyde dehydrogenase, putative
YP_001318152.1	PFAM: microcompartments protein; KEGG: lwe:lwe1138 propanediol/ethanolamine utilization protein
YP_001318153.1	PFAM: cobalamin adenosyltransferase; KEGG: ctc:CTC02171 ethanolamine utilization protein
YP_001318154.1	PFAM: Propanediol utilization protein; KEGG: ssa:SSA_0527 propanediol utilization protein PduL
YP_001318155.1	TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: ctc:CTC02168 ethanolamine utilization protein EutJ
YP_001318156.1	KEGG: ctc:CTC02167 putative ethanolamine utilization protein
YP_001318157.1	PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: dde:Dde_3273 ethanolamine utilization protein EutN
YP_001318158.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: lmf:LMOf2365_1149 PduS protein
YP_001318159.1	PFAM: microcompartments protein; KEGG: maq:Maqu_1244 microcompartments protein
YP_001318160.1	PFAM: Ethanolamine utilisation protein, EutH; KEGG: lin:lin1150 similar to ethanolamine utilization protein EutH - Escherichia coli
YP_001318161.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: ctc:CTC02182 alcetaldehyde dehydrogenase or NADPH-dependent butanol dehydrogenase
YP_001318162.1	KEGG: ctc:CTC01854 transcriptional regulator
YP_001318163.1	in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever
YP_001318169.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; CoA-binding domain protein; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: cth:Cthe_2334 polysaccharide biosynthesis protein CapD
YP_001318170.1	PFAM: putative small multi-drug export; KEGG: ctc:CTC02518 putative small multi-drug export protein
YP_001318173.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3360 hypothetical protein
YP_001318174.1	PFAM: acriflavin resistance protein; KEGG: swo:Swol_1118 hypothetical protein
YP_001318175.1	KEGG: cpf:CPF_0240 putative co-chaperone GrpE
YP_001318176.1	PFAM: Heat shock protein 70; KEGG: cno:NT01CX_1453 DNAk protein
YP_001318177.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cno:NT01CX_1454 conserved protein, putative
YP_001318178.1	PFAM: TPR repeat-containing protein; heat shock protein DnaJ domain protein; SEC-C motif domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cno:NT01CX_1455 TPR domain protein
YP_001318179.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC1506 response regulator (CheY-like receiver domain and a HTH)
YP_001318180.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: cac:CAC1507 sensory transduction histidine kinase (with HAMP domain)
YP_001318181.1	KEGG: ptr:461291 splicing factor YT521-B
YP_001318183.1	KEGG: ttj:TTHA0227 hypothetical protein
YP_001318184.1	PFAM: S-layer domain protein; KEGG: swo:Swol_0317 hypothetical protein
YP_001318185.1	KEGG: ctc:CTC01854 transcriptional regulator
YP_001318186.1	TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cno:NT01CX_1540 UTP-glucose-1-phosphate uridylyltransferase
YP_001318187.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: bld:BLi03124 similar to flagellar motor apparatus; RBL03008
YP_001318188.1	PFAM: OmpA/MotB domain protein; KEGG: bsu:BG10366 similar to motility protein
YP_001318189.1	PFAM: S-layer domain protein; KEGG: cth:Cthe_2809 glycoside hydrolase, family 16
YP_001318190.1	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_4945 TPR repeat
YP_001318191.1	KEGG: cch:Cag_0270 hypothetical protein
YP_001318192.1	KEGG: cch:Cag_0271 hypothetical protein
YP_001318193.1	TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: tte:TTE1927 UDP-glucose 4-epimerase
YP_001318194.1	KEGG: mta:Moth_0665 hypothetical protein
YP_001318195.1	PFAM: transposase, IS4 family protein; KEGG: sak:SAK_2050 IS10R, transposase
YP_001318196.1	PFAM: glycosyl transferase, family 2; KEGG: baa:BA_0542 glycosyl transferase
YP_001318197.1	PFAM: GtrA family protein; KEGG: lmf:LMOf2365_2522 cell wall teichoic acid glycosylation protein GtcA
YP_001318198.1	KEGG: cth:Cthe_0240 hypothetical protein
YP_001318199.1	KEGG: cth:Cthe_0730 hypothetical protein
YP_001318200.1	PFAM: Spore coat protein CotH; KEGG: bsu:BG11791 spore coat protein (inner)
YP_001318201.1	PFAM: acyltransferase 3; KEGG: mma:MM2212 hypothetical protein
YP_001318202.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3360 hypothetical protein
YP_001318203.1	PFAM: regulatory protein, TetR; KEGG: dsy:DSY3361 hypothetical protein
YP_001318204.1	PFAM: sodium:neurotransmitter symporter; KEGG: cvi:CV1670 probable sodium/chloride ion channel
YP_001318205.1	PFAM: response regulator receiver; KEGG: dsy:DSY4941 hypothetical protein
YP_001318206.1	KEGG: tte:TTE0718 acyl-CoA hydrolase
YP_001318207.1	PFAM: protein of unknown function DUF849; KEGG: rfr:Rfer_3885 protein of unknown function DUF849
YP_001318208.1	TIGRFAM: putative transaldolase; PFAM: Transaldolase; KEGG: bce:BC0665 transaldolase
YP_001318209.1	PFAM: alpha/beta hydrolase fold; KEGG: tte:TTE0552 predicted hydrolase or acyltransferase (alpha/beta hydrolase superfamily)
YP_001318210.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_001318211.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_001318212.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_001318213.1	RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_001318214.1	PFAM: thymidine kinase; KEGG: tte:TTE0140 Thymidine kinase
YP_001318215.1	PFAM: regulatory protein, MerR; KEGG: pca:Pcar_2183 predicted transcriptional regulator
YP_001318216.1	TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ser:SERP2381 NADH:flavin oxidoreductase/fumarate reductase, flavoprotein subunit, putative
YP_001318219.1	TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; KEGG: cth:Cthe_2428 modification methylase, HemK family
YP_001318220.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_001318221.1	PFAM: zinc/iron permease; KEGG: tte:TTE0144 predicted divalent heavy-metal cations transporter
YP_001318222.1	PFAM: Forkhead-associated protein; KEGG: cth:Cthe_3045 FHA domain containing protein
YP_001318223.1	PFAM: cell cycle protein; KEGG: cth:Cthe_3046 cell cycle protein
YP_001318224.1	PFAM: penicillin-binding protein, transpeptidase; KEGG: cth:Cthe_3047 peptidoglycan glycosyltransferase
YP_001318225.1	TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; KEGG: tte:TTE0145 putative translation factor (SUA5)
YP_001318226.1	PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: chy:CHY_2559 low molecular weight protein-tyrosine-phosphatase
YP_001318227.1	TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: cpr:CPR_2173 ribose 5-phosphate isomerase B
YP_001318228.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_001318229.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: cth:Cthe_2599 CMP/dCMP deaminase, zinc-binding
YP_001318230.1	PFAM: glycosyl transferase, family 4; KEGG: tte:TTE0154 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase
YP_001318231.1	PFAM: sodium:neurotransmitter symporter; KEGG: vfi:VF1605 putative neurotransmitter:Na+ symporter, NSS family
YP_001318232.1	PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: ctc:CTC00311 UDP-N-acetylglucosamine 2-epimerase
YP_001318233.1	KEGG: gme:Gmet_3357 hypothetical protein
YP_001318234.1	KEGG: gsu:GSU0335 hypothetical protein
YP_001318235.1	TIGRFAM: ATP synthase F0, A subunit; PFAM: H+-transporting two-sector ATPase, A subunit; KEGG: cpf:CPF_2458 ATP synthase F0, A subunit
YP_001318236.1	TIGRFAM: ATP synthase F0, C subunit; PFAM: H+-transporting two-sector ATPase, C subunit; KEGG: fnu:FN0363 ATP synthase C chain, sodium ion specific
YP_001318237.1	produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0
YP_001318238.1	TIGRFAM: ATP synthase F0, B subunit; PFAM: H+-transporting two-sector ATPase, B/B' subunit; KEGG: tte:TTE0633 F0F1-type ATP synthase b subunit
YP_001318239.1	TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; KEGG: dsy:DSY4915 ATP synthase F1 delta subunit
YP_001318240.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_001318241.1	TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+-transporting two-sector ATPase, gamma subunit; KEGG: chy:CHY_2546 ATP synthase F1, gamma subunit
YP_001318242.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_001318243.1	TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+-transporting two-sector ATPase, delta/epsilon subunit; KEGG: tte:TTE0638 F0F1-type ATP synthase epsilon subunit (mitochondrial delta subunit)
YP_001318244.1	KEGG: dsy:DSY0901 hypothetical protein
YP_001318245.1	PFAM: protein of unknown function DUF1694; KEGG: dsy:DSY3042 hypothetical protein
YP_001318246.1	KEGG: tte:TTE0157 hypothetical protein
YP_001318247.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_001318248.1	TIGRFAM: SpoIID/LytB domain protein; Sporulation stage II, protein D firmicutes; PFAM: Stage II sporulation D domain protein; KEGG: cth:Cthe_2616 SpoIID/LytB domain protein containing protein
YP_001318249.1	PFAM: peptidase M23B; KEGG: cth:Cthe_2617 peptidase M23B
YP_001318250.1	PFAM: regulatory protein, TetR; KEGG: son:SO3684 transcriptional regulator, TetR family
YP_001318251.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3360 hypothetical protein
YP_001318252.1	PFAM: acriflavin resistance protein; KEGG: swo:Swol_1118 hypothetical protein
YP_001318253.1	TIGRFAM: Sporulation stage III, transcriptional regulator SpoIIID; KEGG: cno:NT01CX_0524 stage III sporulation protein D
YP_001318254.1	TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; KEGG: cth:Cthe_2619 cell shape determining protein, MreB/Mrl family
YP_001318255.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_0941 ATP binding protein of ABC transporter
YP_001318256.1	KEGG: cth:Cthe_3171 S-layer domain-like protein
YP_001318257.1	PFAM: protein of unknown function DUF214; KEGG: swo:Swol_0943 ABC transporter component-like protein
YP_001318258.1	PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: tte:TTE0172 Flagellar basal body and hook proteins
YP_001318259.1	PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: tte:TTE0173 Flagellar basal body and hook proteins
YP_001318260.1	KEGG: dps:DP2685 similar to flagellar muramidase protein (FlgJ)
YP_001318261.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_001318262.1	PFAM: protein of unknown function DUF1568; KEGG: swo:Swol_0164 transposase and inactivated derivatives-like protein
YP_001318263.1	PFAM: protein of unknown function DUF368; KEGG: oih:OB0592 hypothetical protein
YP_001318264.1	TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cpr:CPR_0469 UTP-glucose-1-phosphate uridylyltransferase
YP_001318265.1	TIGRFAM: prevent-host-death family protein; KEGG: chy:CHY_2512 prevent-host-death family protein
YP_001318266.1	TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: dsy:DSY2129 hypothetical protein
YP_001318269.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: cac:CAC2546 transcriptional regulator, FadR family
YP_001318270.1	PFAM: helix-turn-helix domain protein; bacteriophage CI repressor; KEGG: ecv:APECO1_376 putative repressor protein encoded within prophage CP-933O
YP_001318274.1	KEGG: tte:TTE2173 hypothetical protein
YP_001318275.1	PFAM: Transposase-like, Mu-like; KEGG: bcz:pE33L466_0072 transposase
YP_001318276.1	KEGG: cjr:CJE0269 bacteriophage DNA transposition protein B, putative
YP_001318280.1	PFAM: SpoVT/AbrB domain protein; KEGG: swo:Swol_0047 transcription regulator AbrB
YP_001318285.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; KEGG: cpr:CPR_1733 RNA polymerase sigma-E factor
YP_001318286.1	KEGG: pol:Bpro_3769 hypothetical protein
YP_001318293.1	PFAM: 3D domain protein; KEGG: bsu:BG13521 similar to cell wall-binding protein
YP_001318294.1	KEGG: ssa:SSA_0424 exopolysaccharide biosynthesis protein, putative; related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like protein
YP_001318295.1	PFAM: cell wall hydrolase/autolysin; KEGG: bld:BLi01974 N-acetylmuramoyl-L-alanine amidase cwlL precursor (Cell wall hydrolase) (Autolysin); RBL04154
YP_001318300.1	KEGG: mfa:Mfla_2702 hypothetical protein
YP_001318301.1	PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; KEGG: tte:TTE0730 Transcription antiterminator
YP_001318302.1	TIGRFAM: phage uncharacterized protein; KEGG: bha:BH3533 hypothetical protein
YP_001318303.1	TIGRFAM: phage-associated protein, HI1409 family; KEGG: efa:EF1456 conserved hypothetical protein TIGR01555
YP_001318304.1	TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family; PFAM: phage putative head morphogenesis protein, SPP1 gp7; KEGG: efa:EF1457 minor head protein
YP_001318305.1	KEGG: lin:lin1728 hypothetical protein
YP_001318306.1	KEGG: efa:EF1462 hypothetical protein
YP_001318307.1	KEGG: lin:lin1726 hypothetical protein
YP_001318309.1	KEGG: lin:lin1724 hypothetical protein
YP_001318310.1	KEGG: lin:lin1723 hypothetical protein
YP_001318313.1	KEGG: efa:EF1469 hypothetical protein
YP_001318314.1	KEGG: hit:NTHI1539 hypothetical protein
YP_001318317.1	TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: bld:BLi01480 hypothetical protein
YP_001318318.1	KEGG: lin:lin1715 hypothetical protein
YP_001318319.1	KEGG: efa:EF1475 hypothetical protein
YP_001318320.1	KEGG: lin:lin1713 hypothetical protein
YP_001318322.1	KEGG: efa:EF1478 hypothetical protein
YP_001318323.1	KEGG: efa:EF1479 hypothetical protein
YP_001318324.1	KEGG: lin:lin1709 hypothetical protein
YP_001318325.1	KEGG: lin:lin1708 hypothetical protein
YP_001318328.1	PFAM: phage integrase domain protein SAM domain protein; KEGG: dsy:DSY2171 hypothetical protein
YP_001318329.1	PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; KEGG: ctc:CTC02083 electron transfer flavoprotein beta-subunit
YP_001318330.1	PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; KEGG: tte:TTE0547 Electron transfer flavoprotein alpha-subunit
YP_001318331.1	KEGG: pho:PH0137 hypothetical protein
YP_001318332.1	PFAM: FAD linked oxidase domain protein; KEGG: afu:AF0394 D-lactate dehydrogenase, cytochrome-type (dld)
YP_001318336.1	PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase
YP_001318338.1	KEGG: cth:Cthe_2665 Zn-finger containing protein
YP_001318339.1	PFAM: heat shock protein DnaJ domain protein; KEGG: gka:GK2503 chaperone protein (heat shock protein)
YP_001318340.1	PFAM: VanZ family protein; KEGG: dsy:DSY3286 hypothetical protein
YP_001318341.1	PFAM: glutamine amidotransferase class-I; KEGG: pca:Pcar_2563 GMP synthase - glutamine amidotransferase domain
YP_001318342.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: oih:OB3476 transcriptional repressor
YP_001318343.1	KEGG: bms:BR0544 ribose ABC transporter, periplasmic D-ribose-binding protein
YP_001318344.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB2574 ribose ABC transporter ATP-binding protein
YP_001318345.1	PFAM: inner-membrane translocator; KEGG: cpf:CPF_1881 ribose ABC transporter, permease protein
YP_001318346.1	PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tte:TTE1948 sugar phosphate isomerase/epimerase
YP_001318347.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: bha:BH1248 NADH-dependent dyhydrogenase
YP_001318348.1	KEGG: tde:TDE2712 hypothetical protein
YP_001318349.1	PFAM: alpha/beta hydrolase fold; KEGG: chy:CHY_0890 hydrolase, alpha/beta fold family
YP_001318350.1	PFAM: metal-dependent protein hydrolase; KEGG: cps:CPS_2163 hypothetical protein
YP_001318351.1	PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; KEGG: cth:Cthe_1297 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
YP_001318352.1	TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: hma:pNG7256 xanthine permease
YP_001318353.1	KEGG: swo:Swol_1757 hypothetical protein
YP_001318354.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: bld:BLi03297 close homolog to McpA methyl-accepting chemotaxis protein; RBL01413
YP_001318356.1	PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: dps:DP3068 similar to 4-hydroxybenzoyl-CoA reductase (HcrB)
YP_001318357.1	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: dps:DP3067 4-hydroxybenzoyl-CoA reductase (HcrC)
YP_001318358.1	PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: dps:DP3066 similar to 4-Hydroxybenzoyl-CoA reductase (HcrA)
YP_001318360.1	KEGG: bca:BCE_2880 hypothetical protein
YP_001318361.1	PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: cac:CAC0192 similar to chloromuconate cycloisomerase
YP_001318362.1	PFAM: peptidase U61, LD-carboxypeptidase A; KEGG: bld:BLi01397 YkfA
YP_001318363.1	PFAM: peptidase M19, renal dipeptidase; KEGG: tko:TK2040 microsomal dipeptidase homolog
YP_001318364.1	PFAM: regulatory protein, MerR; KEGG: dsy:DSY3698 hypothetical protein
YP_001318365.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: eca:ECA0910 putative flavoprotein subunit of a reductase
YP_001318366.1	PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: tte:TTE0770 NCAIR mutase (PurE)-related proteins
YP_001318367.1	PFAM: protein of unknown function DUF111; KEGG: cth:Cthe_0369 protein of unknown function DUF111
YP_001318368.1	PFAM: ExsB family protein; KEGG: chy:CHY_1281 conserved hypothetical protein TIGR00268
YP_001318369.1	PFAM: peptidase M20; KEGG: cac:CAC0367 arginine degradation protein (gene RocB)
YP_001318370.1	TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; KEGG: gka:GK1208 succinyl-CoA synthetase beta subunit (succinate-CoA ligase beta subunit)
YP_001318371.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_001318372.1	KEGG: cth:Cthe_0320 hypothetical protein
YP_001318373.1	PFAM: OmpA/MotB domain protein; KEGG: cjj:CJJ81176_0627 chemotaxis protein MotB, putative
YP_001318374.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: oih:OB2520 two-component sensor histidine kinase involved in degradative enzyme
YP_001318375.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: tte:TTE1681 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain
YP_001318377.1	KEGG: hsa:1834 dentin sialophosphoprotein
YP_001318378.1	TIGRFAM: peptidase S26B, signal peptidase; KEGG: cpf:CPF_2579 signal peptidase I
YP_001318382.1	PFAM: S-layer domain protein; KEGG: cth:Cthe_1368 S-layer-like domain containing protein
YP_001318384.1	PFAM: multi antimicrobial extrusion protein MatE; KEGG: cno:NT01CX_0285 MATE efflux family protein
YP_001318385.1	KEGG: mkm:Mkms_5396 conserved hypothetical protein
YP_001318386.1	PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; KEGG: cff:CFF8240_1062 transcriptional regulator, IclR family
YP_001318387.1	PFAM: Gluconate transporter; Citrate transporter; KEGG: msu:MS0335 GntT protein
YP_001318388.1	PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: rpc:RPC_4380 dihydroxy-acid dehydratase
YP_001318389.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: cje:Cj0021c hypothetical protein
YP_001318390.1	PFAM: aminotransferase, class I and II; KEGG: art:Arth_1423 aminotransferase, class I and II
YP_001318391.1	PFAM: HpcH/HpaI aldolase; KEGG: ter:Tery_2821 HpcH/HpaI aldolase
YP_001318392.1	TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: cno:NT01CX_0385 pyruvate formate-lyase
YP_001318393.1	TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM domain protein; KEGG: spd:SPD_0229 glycyl-radical enzyme activating protein family protein
YP_001318394.1	KEGG: tte:TTE1235 hypothetical protein
YP_001318395.1	PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: tte:TTE1236 threonine synthase
YP_001318396.1	catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate
YP_001318397.1	PFAM: ThiJ/PfpI domain protein; Catalase domain protein; KEGG: bha:BH1980 catalase
YP_001318398.1	PFAM: spore germination B3 GerAC family protein; KEGG: bha:BH2186 hypothetical protein
YP_001318399.1	TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: bcz:BCZK2852 spore germination protein; possible amino acid permease
YP_001318400.1	PFAM: GerA spore germination protein; KEGG: bcz:pE33L466_0139 spore germination protein KA
YP_001318401.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; SMART: extracellular solute-binding protein, family 3; KEGG: fnu:FN1135 phosphonates-binding protein
YP_001318402.1	TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ser:SERP2285 phosphonate ABC transporter, ATP-binding protein
YP_001318403.1	TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1137 phosphonates transport system permease protein phnE
YP_001318404.1	PFAM: protein of unknown function DUF214; KEGG: chy:CHY_0168 cell division protein FtsX
YP_001318405.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY4865 hypothetical protein
YP_001318406.1	KEGG: sth:STH2334 hypothetical protein
YP_001318407.1	molecular chaperone
YP_001318408.1	KEGG: pmn:PMN2A_1035 ABC-type metal ion transport system periplasmic component
YP_001318409.1	catalyzes the ATP-dependent transport of cobalt
YP_001318410.1	PFAM: cobalt transport protein; KEGG: mla:Mlab_1390 excinuclease ABC, C subunit domain protein
YP_001318411.1	TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chy:CHY_1630 cobalt ABC transporter, ATP-binding protein
YP_001318412.1	KEGG: tde:TDE2130 hypothetical protein
YP_001318413.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: swo:Swol_1894 HD-GYP domain
YP_001318414.1	PFAM: protein of unknown function DUF34; KEGG: chy:CHY_1566 hypothetical protein
YP_001318415.1	KEGG: sus:Acid_5580 putative transmembrane protein
YP_001318416.1	PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: mma:MM3062 hypothetical protein
YP_001318417.1	PFAM: Phosphoglycerate mutase; KEGG: gka:GK1466 phosphoglycerate mutase
YP_001318418.1	PFAM: protein of unknown function DUF74; KEGG: cno:NT01CX_0170 hypothetical UPF0145 protein
YP_001318420.1	KEGG: oih:OB2607 hypothetical protein
YP_001318421.1	KEGG: tte:TTE0483 hypothetical protein
YP_001318423.1	PFAM: beta-lactamase domain protein; KEGG: bcl:ABC2499 hypothetical protein
YP_001318424.1	KEGG: dsy:DSY3881 hypothetical protein
YP_001318425.1	KEGG: sal:Sala_1461 uncharacterized membrane protein-like protein
YP_001318426.1	PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: tac:Ta0113 probable threonine dehydratase, biodegradative
YP_001318427.1	PFAM: Peptidoglycan-binding domain 1 protein; Peptidoglycan-binding LysM; KEGG: tte:TTE2219 LysM-repeat proteins and domains
YP_001318428.1	PFAM: Peptidoglycan-binding LysM; metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: bld:BLi00814 similar to 2',3'-cyclic-nucleotide 2'-phosphodiesterase; RBL02320
YP_001318429.1	PFAM: YibE/F family protein; KEGG: cac:CAC2436 hypothetical protein
YP_001318430.1	PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: bld:BLi00865 YfiF
YP_001318431.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pho:PH0577 damage-inducible protein
YP_001318432.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_1288 two component transcriptional regulator, winged helix family
YP_001318433.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: cac:CAC3219 membrane associated histidine kinase with HAMP domain
YP_001318435.1	PFAM: phospholipase C zinc-binding protein; KEGG: cth:Cthe_3193 phospholipase C zinc-binding
YP_001318436.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rsp:RSP_1605 TRAP-T family transporter, periplasmic binding protein, DctP
YP_001318437.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: oih:OB0242 C4-dicarboxylate transport system permease small protein
YP_001318438.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: msu:MS0528 hypothetical protein
YP_001318439.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: tte:TTE2558 transcriptional regulator
YP_001318440.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bth:BT_3617 sorbitol dehydrogenase
YP_001318441.1	catalyzes the formation of D-tagaturonate from D-altronate
YP_001318442.1	PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: cac:CAC0696 putative altronate dehydratase
YP_001318443.1	TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; KEGG: tte:TTE2002 glycerol kinase
YP_001318444.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: fnu:FN1258 C4-dicarboxylate-binding protein
YP_001318445.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: fnu:FN1257 C4-dicarboxylate transporter small subunit
YP_001318446.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: fnu:FN1256 C4-dicarboxylate transporter large subunit
YP_001318447.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: fnu:FN1891 glycerophosphoryl diester phosphodiesterase
YP_001318448.1	PFAM: glycerol-3-phosphate responsive antiterminator; KEGG: cno:NT01CX_0613 glycerol uptake operon antiterminator regulatory protein
YP_001318449.1	PFAM: amino acid-binding ACT domain protein; MgtC/SapB transporter; KEGG: cth:Cthe_1919 MgtC/SapB transporter
YP_001318450.1	KEGG: dsy:DSY3881 hypothetical protein
YP_001318451.1	KEGG: cth:Cthe_1377 amino acid-binding ACT
YP_001318452.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_001318453.1	TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: tte:TTE2619 threonine synthase
YP_001318454.1	TIGRFAM: homoserine kinase; PFAM: GHMP kinase; KEGG: ctc:CTC02357 homoserine kinase
YP_001318455.1	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: ade:Adeh_0152 HPrNtr
YP_001318456.1	PFAM: tRNA synthetase, class II (G, H, P and S); KEGG: cth:Cthe_2880 histidyl-tRNA synthetase
YP_001318457.1	TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase, catalytic region; KEGG: cac:CAC0936 ATP phosphoribosyltransferase
YP_001318458.1	PFAM: histidinol dehydrogenase; KEGG: tte:TTE2138 histidinol dehydrogenase
YP_001318459.1	TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; Allinase-like; KEGG: cno:NT01CX_1063 histidinol-phosphate aminotransferase
YP_001318460.1	PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: cth:Cthe_2884 imidazoleglycerol-phosphate dehydratase
YP_001318461.1	TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; CobB/CobQ domain protein glutamine amidotransferase; KEGG: tte:TTE2135 glutamine amidotransferase
YP_001318462.1	TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; KEGG: oih:OB0548 phosphoribosyl formimino-5-aminoimidazole isomerase
YP_001318463.1	TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: tte:TTE2133 imidazoleglycerol-phosphate synthase
YP_001318464.1	PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: tte:TTE2132 phosphoribosyl-AMP cyclohydrolase
YP_001318465.1	biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate
YP_001318466.1	PFAM: sodium:neurotransmitter symporter; KEGG: cfe:CF0515 sodium-dependent transporter
YP_001318468.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC0250 methyl-accepting chemotaxis protein
YP_001318469.1	TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: tko:TK0290 pyruvate-formate lyase-activating enzyme
YP_001318470.1	PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: gsu:GSU2101 formate acetyltransferase
YP_001318471.1	TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: fnu:FN0047 exodeoxyribonuclease III
YP_001318472.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: btl:BALH_0606 ribose operon repressor
YP_001318473.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK1894 sugar ABC transporter (ATP-binding protein)
YP_001318474.1	PFAM: inner-membrane translocator; KEGG: ret:RHE_CH01211 probable sugar ABC transporter, permease protein
YP_001318475.1	KEGG: bha:BH2323 putative simple sugar transport system substrate-binding protein
YP_001318476.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: cpf:CPF_0732 L-iditol 2-dehydrogenase
YP_001318477.1	TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: mta:Moth_2025 xylulokinase
YP_001318478.1	catalyzes the formation of pyruvate from D-cysteine
YP_001318479.1	PFAM: nitroreductase; KEGG: tte:TTE1807 nitroreductase
YP_001318480.1	PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SNF2 helicase associated domain protein; SMART: DEAD-like helicases-like; KEGG: cth:Cthe_2451 SNF2-related protein
YP_001318481.1	TIGRFAM: prevent-host-death family protein; KEGG: swo:Swol_1410 hypothetical protein
YP_001318482.1	PFAM: plasmid stabilization system; KEGG: dsy:DSY1238 hypothetical protein
YP_001318483.1	PFAM: regulatory protein, TetR; KEGG: bld:BLi02021 hypothetical protein
YP_001318484.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_1715 ATPase
YP_001318485.1	PFAM: protein of unknown function DUF214; KEGG: swo:Swol_1714 hypothetical protein
YP_001318486.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment domain-containing protein; secretion protein HlyD family protein; KEGG: dsy:DSY1327 hypothetical protein
YP_001318487.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY4423 hypothetical protein
YP_001318488.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; NMT1/THI5 like; KEGG: wsu:WS1436 putative two-component sensor
YP_001318489.1	PFAM: response regulator receiver; KEGG: ppd:Ppro_0115 response regulator receiver modulated diguanylate cyclase
YP_001318490.1	TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: efa:EF2573 xanthine/uracil permease family protein
YP_001318491.1	PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: dps:DP3068 similar to 4-hydroxybenzoyl-CoA reductase (HcrB)
YP_001318492.1	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: dps:DP3067 4-hydroxybenzoyl-CoA reductase (HcrC)
YP_001318493.1	PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: dps:DP3066 similar to 4-Hydroxybenzoyl-CoA reductase (HcrA)
YP_001318494.1	TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; KEGG: tte:TTE1442 flagellar biosynthesis/type III secretory pathway lipoprotein
YP_001318495.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_001318496.1	PFAM: flagellar basal body-associated protein FliL; KEGG: tte:TTE1431 flagellar basal body-associated protein
YP_001318497.1	PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: cth:Cthe_0477 flagellar motor switch protein FliM
YP_001318498.1	TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: tte:TTE1429 chemotaxis protein CheC, inhibitor of MCP methylation
YP_001318499.1	PFAM: response regulator receiver; KEGG: cth:Cthe_0479 response regulator receiver protein
YP_001318500.1	TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: cth:Cthe_0485 flagellar biosynthesis protein FlhA
YP_001318501.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bha:BH4045 hypothetical protein
YP_001318502.1	PFAM: regulatory protein, MerR; KEGG: bsu:BG10904 transcriptional regulator of the bltD operon
YP_001318503.1	PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: fnu:FN0219 autolysin response regulator
YP_001318504.1	PFAM: ATP-binding region, ATPase domain protein; KEGG: cpf:CPF_0499 sensor histidine kinase
YP_001318505.1	PFAM: Accessory gene regulator B; KEGG: dsy:DSY2528 hypothetical protein
YP_001318507.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: mac:MA4183 reverse transcriptase
YP_001318508.1	KEGG: mhu:Mhun_1523 transposase, IS4
YP_001318516.1	PFAM: ATP-binding region, ATPase domain protein; KEGG: cpf:CPF_0499 sensor histidine kinase
YP_001318518.1	KEGG: bcz:pE33L5_0002 hypothetical protein
YP_001318520.1	KEGG: tte:TTE0622 hypothetical protein
YP_001318521.1	PFAM: protein of unknown function DUF881; KEGG: tte:TTE1642 hypothetical protein
YP_001318522.1	PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: pca:Pcar_1846 NADH:ubiquinone oxidoreductase 24 kD subunit-like
YP_001318523.1	KEGG: mta:Moth_1718 NADH dehydrogenase (quinone)
YP_001318524.1	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: bth:BT_0125 NADH:ubiquinone oxidoreductase subunit
YP_001318525.1	TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; iron hydrogenase, small subunit; hydrogenase large subunit domain protein; KEGG: pca:Pcar_1605 NADH:ubiquinone oxidoreductase subunit
YP_001318526.1	TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bha:BH2945 hypothetical protein
YP_001318527.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bcl:ABC4041 TRAP-type transport system substrate-binding protein
YP_001318528.1	TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: cac:CAC0892 phospho-2-dehydro-3-deoxyheptonate aldolase
YP_001318530.1	PFAM: amino acid-binding ACT domain protein; Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: mta:Moth_1333 prephenate dehydrogenase
YP_001318531.1	TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: gme:Gmet_0864 3-phosphoshikimate 1-carboxyvinyltransferase
YP_001318532.1	PFAM: prephenate dehydratase; KEGG: mtp:Mthe_0937 prephenate dehydratase
YP_001318533.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_001318534.1	PFAM: 3-dehydroquinate synthase; KEGG: tte:TTE1011 3-dehydroquinate synthetase
YP_001318535.1	TIGRFAM: chorismate mutase; PFAM: shikimate kinase; Chorismate mutase; KEGG: tte:TTE1275 Shikimate kinase
YP_001318536.1	TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: cth:Cthe_0178 argininosuccinate lyase
YP_001318537.1	PFAM: argininosuccinate synthase; KEGG: dsy:DSY0785 hypothetical protein
YP_001318538.1	PFAM: NLP/P60 protein; KEGG: sfr:Sfri_3992 NLP/P60 protein
YP_001318539.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: chy:CHY_0091 sensor histidine kinase
YP_001318540.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC0321 response regulator (CheY-like domain, HTH domain)
YP_001318541.1	PFAM: CBS domain containing protein; KEGG: cno:NT01CX_0657 two CBS domain containing protein
YP_001318543.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC01211 methyl-accepting chemotaxis protein TlpA
YP_001318544.1	TIGRFAM: acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: art:Arth_1762 acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
YP_001318545.1	PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; short chain fatty acid transporter; KEGG: bld:BLi00322 YcgA
YP_001318546.1	PFAM: Radical SAM domain protein; KEGG: bcz:BCZK3959 spore photoproduct lyase
YP_001318547.1	TIGRFAM: PAS sensor protein; PFAM: CBS domain containing protein; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: bca:BCE_2865 sensory box sigma-54 dependent DNA-binding response regulator
YP_001318548.1	PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: sat:SYN_01664 electron transport complex protein, NADH-binding subunit
YP_001318549.1	KEGG: chy:CHY_2391 glycine reductase proprotein GrdE
YP_001318551.1	KEGG: ade:Adeh_1149 hypothetical protein
YP_001318555.1	PFAM: proline racemase; KEGG: tcr:506795.80 proline racemase Pfam: Pro_racemase
YP_001318556.1	KEGG: ppr:PBPRA1095 hypothetical integral membrane protein
YP_001318557.1	TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: tte:TTE1277 glutamate 5-kinase
YP_001318558.1	TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); Anticodon-binding domain protein; YbaK/prolyl-tRNA synthetase associated region; KEGG: tte:TTE2319 prolyl-tRNA synthetase
YP_001318559.1	PFAM: chemotaxis sensory transducer; KEGG: ctc:CTC00703 methyl-accepting chemotaxis-like protein
YP_001318560.1	PFAM: gamma-glutamyltranspeptidase; KEGG: oih:OB3267 gamma-glutamyltranspeptidase
YP_001318561.1	PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bld:BLi01170 YisK
YP_001318562.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; MOFRL domain protein; KEGG: tma:TM1585 glycerate kinase, putative
YP_001318563.1	function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain
YP_001318564.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: btk:BT9727_3168 quinone oxidoreductase (NADPH:quinone reductase)
YP_001318565.1	PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: sme:SMb20130 putative dehydrogenase protein
YP_001318566.1	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: chy:CHY_0691 2Fe-2S iron-sulfur cluster binding domain
YP_001318567.1	PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: nca:Noca_4271 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
YP_001318568.1	TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: sth:STH226 uracil permease
YP_001318569.1	PFAM: purine catabolism PurC domain protein; KEGG: cac:CAC1426 possible transcriptional regulator from leucine-rich protein (LRPR) family
YP_001318570.1	KEGG: efa:EF3009 hypothetical protein
YP_001318571.1	PFAM: FdrA family protein; KEGG: ecp:ECP_0397 YahF/FdrA-like protein
YP_001318572.1	KEGG: efa:EF3011 hypothetical protein
YP_001318573.1	PFAM: protein of unknown function DUF1116; KEGG: mta:Moth_2121 protein of unknown function DUF1116
YP_001318574.1	PFAM: cyclase family protein; KEGG: hwa:HQ1938A probable cyclase
YP_001318575.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: spo:SPCC965.09 hypothetical protein
YP_001318576.1	PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ctc:CTC02087 putative bile acid-inducible operon protein F
YP_001318577.1	KEGG: sth:STH2473 hypothetical protein
YP_001318578.1	PFAM: Na+/H+ antiporter NhaC; KEGG: pab:PAB2161 hypothetical protein
YP_001318580.1	TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: dsy:DSY0247 hypothetical protein
YP_001318581.1	TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase class-III; KEGG: cac:CAC1427 4-aminobutyrate aminotransferase (PLP-dependent)
YP_001318582.1	PFAM: amino acid permease-associated region; KEGG: csa:Csal_1907 amino acid permease-associated region
YP_001318583.1	PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: sfu:Sfum_4079 aldehyde ferredoxin oxidoreductase
YP_001318584.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; SMART: AAA ATPase; KEGG: bcl:ABC0453 transcriptional regulator
YP_001318585.1	PFAM: protein of unknown function DUF368; KEGG: tma:TM0164 hypothetical protein
YP_001318586.1	PFAM: PfkB domain protein; KEGG: chy:CHY_0076 kinase, PfkB family
YP_001318587.1	PFAM: Indigoidine synthase A family protein; KEGG: tte:TTE0327 uncharacterized enzyme involved in pigment biosynthesis
YP_001318588.1	PFAM: ATP-binding region, ATPase domain protein; KEGG: mta:Moth_1579 signal transduction histidine kinase regulating citrate/malate metabolism
YP_001318589.1	PFAM: protein of unknown function DUF1292; KEGG: sth:STH1993 hypothetical protein
YP_001318590.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cac:CAC0277 HD-GYP hydrolase domain containing protein
YP_001318591.1	PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cth:Cthe_1265 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
YP_001318592.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE0481 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain
YP_001318593.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE0482 sensory transduction histidine kinase
YP_001318594.1	KEGG: cth:Cthe_1229 spore germination protein-like protein
YP_001318595.1	PFAM: Auxin Efflux Carrier; KEGG: mhu:Mhun_1778 auxin efflux carrier
YP_001318596.1	PFAM: S-layer domain protein; Lytic transglycosylase, catalytic; KEGG: dsy:DSY3348 hypothetical protein
YP_001318597.1	PFAM: protein of unknown function DUF1256; KEGG: cpr:CPR_2154 putative sporulation protein YyaC
YP_001318599.1	PFAM: putative small multi-drug export; KEGG: bha:BH1234 small multidrug export related protein
YP_001318600.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_001318601.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; KEGG: swo:Swol_0517 sigma 28 (flagella/sporulation)
YP_001318602.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC0250 methyl-accepting chemotaxis protein
YP_001318605.1	KEGG: cno:NT01CX_0746 hypothetical protein
YP_001318606.1	TIGRFAM: helicase, RecD/TraA family; SMART: Helix-hairpin-helix DNA-binding, class 1; AAA ATPase; KEGG: tte:TTE0489 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
YP_001318607.1	PFAM: phosphoribosyltransferase; KEGG: swo:Swol_0188 phosphoribosyltransferase
YP_001318608.1	KEGG: tte:TTE0491 flagellar protein
YP_001318609.1	PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: swo:Swol_0190 putative anti-sigma-28 factor, FlgM
YP_001318610.1	KEGG: cth:Cthe_2245 hypothetical protein
YP_001318611.1	TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: tte:TTE0494 Flagellar hook-associated protein
YP_001318612.1	TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: cth:Cthe_2242 flagellar hook-associated protein 3
YP_001318613.1	KEGG: cth:Cthe_2241 hypothetical protein
YP_001318614.1	binds to flagellin and appears to stabilize flagellin during flagella assembly
YP_001318615.1	affects carbohydrate metabolism; has regulatory role in many processes
YP_001318616.1	PFAM: flagellin domain protein; KEGG: mta:Moth_0760 flagellin-like
YP_001318617.1	PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: ctc:CTC01705 sulfatase-domain-containing protein
YP_001318618.1	KEGG: swo:Swol_0231 hypothetical protein
YP_001318621.1	KEGG: swo:Swol_0231 hypothetical protein
YP_001318623.1	TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein, HI0074; KEGG: pca:Pcar_0898 hypothetical protein
YP_001318624.1	PFAM: DNA polymerase, beta domain protein region; KEGG: csa:Csal_1674 DNA polymerase, beta-like region
YP_001318625.1	KEGG: dsy:DSY0395 hypothetical protein
YP_001318627.1	KEGG: dsy:DSY3487 hypothetical protein
YP_001318628.1	KEGG: dsy:DSY0395 hypothetical protein
YP_001318630.1	TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: swo:Swol_1972 prevent-host-death family protein
YP_001318631.1	TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: swo:Swol_1971 hypothetical protein
YP_001318632.1	PFAM: protein of unknown function DUF1568; KEGG: swo:Swol_2192 hypothetical protein
YP_001318633.1	KEGG: mta:Moth_0505 hypothetical protein
YP_001318634.1	PFAM: Rubrerythrin; Ferritin, Dps family protein; KEGG: mja:MJ0746 hypothetical protein
YP_001318636.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cac:CAC0853 HD superfamily hydrolase (HD-GYP domain)
YP_001318637.1	PFAM: helix-turn-helix domain protein; KEGG: chy:CHY_1862 DNA-binding protein
YP_001318639.1	PFAM: DNA polymerase, beta domain protein region; KEGG: swo:Swol_0499 nucleotidyltransferase domain protein
YP_001318640.1	PFAM: HEPN domain protein; KEGG: swo:Swol_0500 protein if unknown function (DUF712) superfamily
YP_001318641.1	PFAM: nucleoside recognition domain protein; KEGG: btk:BT9727_2860 conserved hypothetical protein, possible membrane protein
YP_001318642.1	KEGG: cno:NT01CX_0025 transcription regulator (TetR/AcrR family)
YP_001318643.1	TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC01488 fumarate reductase flavoprotein subunit
YP_001318644.1	PFAM: nitroreductase; KEGG: mta:Moth_1212 nitroreductase
YP_001318645.1	TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cac:CAC1624 uncharacterized protein from DegV (B.subtilis) family
YP_001318646.1	TIGRFAM: C_GCAxxG_C_C family protein; KEGG: cno:NT01CX_0304 hypothetical protein
YP_001318647.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: cac:CAC2608 trancriptional regulator of AraC family
YP_001318648.1	PFAM: FAD linked oxidase domain protein; KEGG: cno:NT01CX_1206 oxidoreductase, FAD-binding
YP_001318649.1	PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; KEGG: cno:NT01CX_1205 electron transfer flavoprotein beta-subunit
YP_001318650.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; KEGG: cno:NT01CX_1204 electron transfer flavoprotein, alpha subunit
YP_001318651.1	PFAM: sodium/glutamate symporter; KEGG: fnu:FN0205 sodium/glutamate symport carrier protein
YP_001318652.1	KEGG: cth:Cthe_2523 hypothetical protein
YP_001318653.1	PFAM: GCN5-related N-acetyltransferase; KEGG: spn:SP_0590 acetyltransferase, GNAT family
YP_001318654.1	KEGG: cth:Cthe_0898 metal dependent phosphohydrolase
YP_001318655.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; Metal-dependent hydrolase HDOD; KEGG: ctc:CTC01693 hypothetical protein
YP_001318656.1	KEGG: tde:TDE0460 transporter, putative
YP_001318658.1	KEGG: gsu:GSU1025 hypothetical protein
YP_001318659.1	TIGRFAM: 2'-5' RNA ligase; PFAM: Phosphoesterase, HXTX; KEGG: cth:Cthe_0503 2'-5' RNA ligase
YP_001318660.1	PFAM: VanZ family protein; KEGG: swo:Swol_0743 hypothetical protein
YP_001318661.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: cth:Cthe_0611 RNA-metabolising metallo-beta-lactamase
YP_001318663.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: bha:BH2947 immunogenic protein
YP_001318664.1	PFAM: Domain of unknown function DUF1850; KEGG: bha:BH2946 hypothetical protein
YP_001318665.1	TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bha:BH2945 hypothetical protein
YP_001318666.1	KEGG: swo:Swol_0189 flagellar protein
YP_001318667.1	PFAM: aminotransferase, class IV; KEGG: cac:CAC2226 enzyme of IlvE/PabC family (branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase)
YP_001318668.1	PFAM: flagellar protein FlaG protein; KEGG: cth:Cthe_2219 flagellar protein FlaG protein
YP_001318669.1	PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: oih:OB2501 flagellar hook-associated protein 2
YP_001318670.1	PFAM: flagellar protein FliS; KEGG: tte:TTE0506 Flagellar protein
YP_001318671.1	KEGG: cth:Cthe_2216 hypothetical protein
YP_001318672.1	TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: ctc:CTC00325 SSU ribosomal protein S30P
YP_001318673.1	KEGG: tte:TTE0519 hypothetical protein
YP_001318674.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_001318675.1	TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: tte:TTE0523 Protein chain release factor B
YP_001318676.1	PFAM: protein of unknown function DUF327; KEGG: tte:TTE0096 hypothetical protein
YP_001318677.1	KEGG: ddi:DDBDRAFT_0188916 hypothetical protein
YP_001318678.1	KEGG: cth:Cthe_0759 flagellar biosynthesis
YP_001318679.1	PFAM: flagellin domain protein; KEGG: bha:BH3616 flagellin
YP_001318680.1	KEGG: gme:Gmet_0445 flagellar protein FliS
YP_001318681.1	PFAM: sulfatase; KEGG: tma:TM1703 hypothetical protein
YP_001318682.1	KEGG: bld:BLi00261 hypothetical protein
YP_001318683.1	PFAM: RNA binding S1 domain protein; SMART: Resolvase, RNase H domain protein fold; KEGG: cth:Cthe_1955 RNA binding S1
YP_001318684.1	PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_3345 major facilitator superfamily MFS_1
YP_001318685.1	KEGG: mta:Moth_0901 hypothetical protein
YP_001318686.1	KEGG: tte:TTE0534 hypothetical protein
YP_001318687.1	PFAM: protein of unknown function UPF0079; KEGG: dps:DP1956 hypothetical protein
YP_001318688.1	PFAM: peptidase M22, glycoprotease; KEGG: cno:NT01CX_0503 glycoprotease family protein
YP_001318689.1	TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: tte:TTE0537 Acetyltransferases
YP_001318690.1	KEGG: bth:BT_0860 putative ABC transporter ATP-binding protein
YP_001318692.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_001318694.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0476 ABC transporter, ATP-binding protein
YP_001318695.1	modulates transcription in response to the NADH/NAD(+) redox state
YP_001318696.1	PFAM: regulatory protein, MarR; KEGG: cpf:CPF_1323 transcriptional regulator, MarR family
YP_001318697.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cth:Cthe_2103 4Fe-4S ferredoxin, iron-sulfur binding
YP_001318698.1	KEGG: cth:Cthe_2070 hypothetical protein
YP_001318699.1	PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: nme:NMB1476 glutamate dehydrogenase, NAD-specific
YP_001318701.1	TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: dvl:Dvul_0784 L-lactate transport
YP_001318702.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: ctc:CTC00971 transcriptional regulator, putative pyruvate dehydrogenase complex repressor
YP_001318703.1	PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; KEGG: cno:NT01CX_1610 electron-transferring flavoprotein small chain
YP_001318704.1	PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; KEGG: ctc:CTC00974 electron transfer flavoprotein alpha-subunit
YP_001318705.1	PFAM: FAD linked oxidase domain protein; KEGG: cac:CAC2542 FAD/FMN-containing dehydrogenase
YP_001318706.1	PFAM: protein of unknown function DUF77; KEGG: mta:Moth_2497 protein of unknown function DUF77
YP_001318707.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0848 ABC-type multidrug transport system, ATPase component
YP_001318708.1	KEGG: swo:Swol_2039 hypothetical protein
YP_001318709.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: cac:CAC0231 transcripcional regulator of sugar metabolism
YP_001318710.1	PFAM: PfkB domain protein; KEGG: cac:CAC0232 1-phosphofructokinase (fructoso 1-phosphate kinase)
YP_001318711.1	TIGRFAM: PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; KEGG: cac:CAC0233 PTS system, IIA component
YP_001318712.1	TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; KEGG: tte:TTE2585 phosphotransferase system, fructose-specific IIC component
YP_001318713.1	PFAM: Propeptide, PepSY amd peptidase M4
YP_001318714.1	PFAM: GCN5-related N-acetyltransferase; KEGG: btk:BT9727_2948 possible streptothricin acetyltransferase
YP_001318715.1	PFAM: HhH-GPD family protein; 8-oxoguanine DNA glycosylase domain protein; KEGG: cno:NT01CX_0465 8-oxoguanine-DNA-glycosylase, putative
YP_001318716.1	PFAM: protein of unknown function DUF554; KEGG: tte:TTE0575 uncharacterized membrane protein, possible Na+ channel or pump
YP_001318717.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_001318718.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_001318719.1	PFAM: phage integrase family protein; KEGG: cth:Cthe_2455 phage integrase
YP_001318721.1	PFAM: protein of unknown function DUF955; KEGG: ctc:CTC01069 GP23-like protein
YP_001318722.1	PFAM: helix-turn-helix domain protein; KEGG: bce:BC3704 LexA repressor
YP_001318723.1	KEGG: bce:BC3703 phage protein
YP_001318725.1	PFAM: BRO domain protein; KEGG: ctc:CTC01071 KilA protein, putative phage-related DNA binding protein
YP_001318726.1	KEGG: cno:NT01CX_2190 phage protein
YP_001318730.1	KEGG: lwe:lwe1074 hypothetical protein
YP_001318731.1	restriction endonuclease; the EcoKI enzyme recognizes 5'-AACN(6)GTGC-3'; subunit R is required for both nuclease and ATPase activities
YP_001318732.1	PFAM: N-6 DNA methylase; KEGG: bca:BCE_0841 type I restriction-modification system, M subunit
YP_001318733.1	PFAM: restriction modification system DNA specificity domain; KEGG: bca:BCE_0842 type I restriction-modification enzyme, S subunit, putative
YP_001318734.1	PFAM: SMC domain protein; KEGG: dvl:Dvul_0855 SMC domain protein
YP_001318735.1	KEGG: bxe:Bxe_A3669 hypothetical protein
YP_001318736.1	KEGG: det:DET1563 hypothetical protein
YP_001318737.1	KEGG: mkm:Mkms_0838 conserved hypothetical protein
YP_001318739.1	PFAM: helix-turn-helix domain protein; KEGG: cpf:CPF_1021 DNA-binding protein
YP_001318740.1	PFAM: protein of unknown function DUF955; KEGG: swo:Swol_2003 Zn peptidase-like protein
YP_001318744.1	KEGG: chy:CHY_0145 hypothetical protein
YP_001318747.1	PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: dde:Dde_1882 hypothetical protein
YP_001318748.1	PFAM: LexA DNA-binding domain protein; KEGG: bld:BLi02032 transcriptional repressor of the SOS regulon; RBL05710
YP_001318751.1	KEGG: swo:Swol_2426 hypothetical protein
YP_001318753.1	TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; KEGG: cac:CAC1425 dUTP pyrophosphatase
YP_001318754.1	PFAM: GerA spore germination protein; KEGG: tte:TTE2555 putative spore germination protein
YP_001318755.1	TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: tte:TTE2554 spore germination protein homolog YndE
YP_001318756.1	PFAM: spore germination B3 GerAC family protein; KEGG: bha:BH2186 hypothetical protein
YP_001318760.1	KEGG: mkm:Mkms_0838 conserved hypothetical protein
YP_001318767.1	PFAM: helix-turn-helix domain protein; KEGG: cpf:CPF_1604 DNA-binding protein
YP_001318769.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bsu:BG13508 similar to transcriptional regulator (AraC/XylS family)
YP_001318770.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: bld:BLi00477 similar to proteins; RBL01685
YP_001318771.1	TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: bcz:pE33L466_0260 protein secretion chaperonin
YP_001318772.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: btl:BALH_3597 hydrolase, haloacid dehalogenase-like family
YP_001318773.1	PFAM: PfkB domain protein; KEGG: gka:GK1957 2-keto-3-deoxy-gluconate kinase
YP_001318774.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sus:Acid_1152 glyoxalase/bleomycin resistance protein/dioxygenase
YP_001318775.1	PFAM: ABC transporter related; TOBE domain protein; transport-associated protein OB domain protein; SMART: AAA ATPase; KEGG: cno:NT01CX_0964 ABC transporter (TOBE domain and ATPase domain)
YP_001318776.1	PFAM: glycosyl hydrolase, family 88; KEGG: cac:CAC0359 similar to YteR (Bacilus subtilis)
YP_001318777.1	PFAM: extracellular solute-binding protein, family 1; KEGG: yps:YPTB2362 putative ABC type periplasmic sugar-binding protein
YP_001318778.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2403 binding-protein-dependent transport system, inner membrane component
YP_001318779.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yps:YPTB2360 putative sugar ABC transporter (permease)
YP_001318780.1	PFAM: glycoside hydrolase, family 28; KEGG: cac:CAC0355 putative polygalacturonase (pectinase)
YP_001318781.1	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
YP_001318782.1	PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: cpr:CPR_0392 2-deoxy-D-gluconate 3-dehydrogenase
YP_001318783.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: cac:CAC0693 transcriptional regulator of the LacI family
YP_001318784.1	KEGG: mta:Moth_0427 hypothetical protein
YP_001318785.1	PFAM: Coat F domain protein; KEGG: cac:CAC2683 related to spore coat protein F
YP_001318786.1	KEGG: cac:CAC2682 hypothetical protein
YP_001318787.1	PFAM: aldo/keto reductase; KEGG: cth:Cthe_0236 aldo/keto reductase
YP_001318788.1	KEGG: cth:Cthe_2252 thioesterase family protein
YP_001318789.1	TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; KEGG: chy:CHY_1176 inosine-5'-monophosphate dehydrogenase
YP_001318790.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_001318792.1	PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: tte:TTE2462 hypothetical protein
YP_001318793.1	PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: cac:CAC1317 potassium channel subunit
YP_001318794.1	PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_3188 copper amine oxidase-like protein
YP_001318795.1	TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; KEGG: tma:TM0447 phosphoribosylaminoimidazole carboxylase ATPase subunit
YP_001318796.1	TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: pab:PAB1077 phosphoribosylaminoimidazole carboxylase catalytic subunit
YP_001318797.1	TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; KEGG: tte:TTE0588 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase
YP_001318798.1	TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; KEGG: bbk:BARBAKC583_0860 phosphoribosylformylglycinamidine synthase, PurS protein
YP_001318799.1	TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: gka:GK0262 phosphoribosylformylglycinamidine synthase subunit I
YP_001318800.1	TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: tte:TTE0811 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain
YP_001318801.1	TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase, class-II; phosphoribosyltransferase; KEGG: cno:NT01CX_2422 amidophosphoribosyltransferase
YP_001318802.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_001318803.1	TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: cth:Cthe_1247 phosphoribosylglycinamide formyltransferase
YP_001318804.1	involved in de novo purine biosynthesis
YP_001318805.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_001318806.1	KEGG: cac:CA_P0013 FAD dependent dehydrogenase
YP_001318808.1	PFAM: chemotaxis sensory transducer; KEGG: tte:TTE0646 methyl-accepting chemotaxis protein
YP_001318809.1	PFAM: NLPA lipoprotein; KEGG: fnu:FN0658 ABC transporter substrate-binding protein
YP_001318810.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A0996 ABC methionine transporter, inner membrane subunit
YP_001318811.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: vfi:VF0686 methionine transport ATP-binding protein
YP_001318813.1	TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor; KEGG: cth:Cthe_1388 TrpR like protein, YerC/YecD
YP_001318814.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive
YP_001318817.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: swo:Swol_2483 putative PAS/PAC sensor protein
YP_001318819.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC0250 methyl-accepting chemotaxis protein
YP_001318820.1	TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: tte:TTE0604 Superfamily I DNA and RNA helicases
YP_001318821.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_001318823.1	TIGRFAM: integral membrane protein TIGR01906; PFAM: Integral membrane protein 1906; KEGG: tte:TTE1993 hypothetical protein
YP_001318824.1	PFAM: Rubrerythrin; KEGG: cpe:CPE0855 rubrerythrin
YP_001318825.1	PFAM: FeoA family protein
YP_001318826.1	TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: mtp:Mthe_0703 small GTP-binding protein
YP_001318827.1	KEGG: hha:Hhal_1920 hypothetical protein
YP_001318828.1	PFAM: conserved hypothetical protein 374; KEGG: mst:Msp_1503 conserved hypothetical membrane-spanning protein
YP_001318829.1	KEGG: gka:GK0660 hypothetical protein
YP_001318831.1	PFAM: AIR synthase related protein domain protein; KEGG: cth:Cthe_1060 AIR synthase related protein-like protein
YP_001318832.1	PFAM: cell wall hydrolase/autolysin; copper amine oxidase domain protein; KEGG: cth:Cthe_0185 cell wall hydrolase/autolysin
YP_001318833.1	KEGG: cth:Cthe_2213 hypothetical protein
YP_001318834.1	KEGG: cth:Cthe_0187 hypothetical protein
YP_001318835.1	TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; KEGG: tte:TTE0618 RNase PH
YP_001318836.1	TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: cth:Cthe_0189 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family
YP_001318837.1	TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: swo:Swol_0455 hypothetical protein
YP_001318840.1	PFAM: S-layer domain protein; GLUG domain protein; KEGG: swo:Swol_0141 hypothetical protein
YP_001318841.1	PFAM: transposase IS200-family protein; KEGG: ctc:CTC00621 transposase
YP_001318842.1	TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bcz:pE33L466_0272 transposase
YP_001318843.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; metal-dependent phosphohydrolase, HD sub domain; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; metal-dependent phosphohydrolase, HD region; KEGG: dsy:DSY1176 hypothetical protein
YP_001318845.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: fnu:FN1258 C4-dicarboxylate-binding protein
YP_001318846.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: fnu:FN1257 C4-dicarboxylate transporter small subunit
YP_001318847.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: C4-dicarboxylate anaerobic carrier; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: fnu:FN1256 C4-dicarboxylate transporter large subunit
YP_001318848.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: fnu:FN1255 nagD protein
YP_001318849.1	PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: fnu:FN0183 glycerol-3-phosphate dehydrogenase
YP_001318850.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: fnu:FN0182 sarcosine oxidase alpha subunit
YP_001318851.1	PFAM: protein of unknown function DUF1667; KEGG: cac:CAC1324 uncharacterized predected metal-binding protein
YP_001318852.1	PFAM: amino acid-binding ACT domain protein; MgtC/SapB transporter; KEGG: cth:Cthe_1919 MgtC/SapB transporter
YP_001318853.1	PFAM: fructose-1,6-bisphosphatase; KEGG: cac:CAC1572 fructose-1,6-bisphosphatase
YP_001318854.1	KEGG: swo:Swol_1999 hypothetical protein
YP_001318855.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: dsy:DSY4221 hypothetical protein
YP_001318856.1	KEGG: cth:Cthe_3092 conserved hypothetical protein, CF-27 family
YP_001318857.1	PFAM: regulatory protein, ArsR; KEGG: lin:pli0036 similar to arsenical resistance operon repressor
YP_001318859.1	PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cth:Cthe_1110 protein tyrosine phosphatase
YP_001318860.1	TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: cth:Cthe_1111 bile acid:sodium symporter
YP_001318861.1	PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: ser:SERP2427 arsenical resistance operon trans-acting repressor
YP_001318862.1	TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; KEGG: hwa:HQ2609A probable arsenite efflux ATPase
YP_001318863.1	TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; KEGG: hal:VNG7123 arsenite-transporting ATPase
YP_001318864.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: chy:CHY_0790 tungsten-containing aldehyde ferredoxin oxidoreductase cofactor modifying protein
YP_001318865.1	KEGG: mta:Moth_2174 molybdopterin-guanine dinucleotide biosynthesis protein A
YP_001318866.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dsy:DSY4131 putative anaerobic dehydrogenase
YP_001318867.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dsy:DSY4132 putative oxidoreductase iron-sulfur subunit
YP_001318868.1	PFAM: cytoplasmic chaperone TorD family protein; KEGG: dsy:DSY4608 uncharacterized component of anaerobic dehydrogenase
YP_001318869.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dsy:DSY0890 hypothetical protein
YP_001318870.1	TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_001318871.1	PFAM: molybdopterin binding domain; KEGG: chy:CHY_0621 molybdopterin-binding domain protein
YP_001318872.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: bha:BH3021 molybdopterin biosynthesis
YP_001318873.1	TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: mta:Moth_1819 molybdopterin-guanine dinucleotide biosynthesis protein B
YP_001318874.1	TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: chy:CHY_2570 twin-arginine translocation protein, TatA/E family
YP_001318875.1	TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: sfu:Sfum_0692 sec-independent protein translocase, TatC subunit
YP_001318876.1	involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth
YP_001318877.1	PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: tte:TTE1387 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)
YP_001318878.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bha:BH0418 unknown conserved protein in others
YP_001318879.1	TIGRFAM: DNA binding domain, excisionase family; KEGG: vvy:VV2209 hypothetical protein
YP_001318880.1	KEGG: cac:CAC1026 superfamily I DNA helicase
YP_001318882.1	PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: tte:TTE1387 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)
YP_001318883.1	PFAM: NUDIX hydrolase; KEGG: psb:Psyr_2666 NUDIX hydrolase
YP_001318884.1	TIGRFAM: DNA binding domain, excisionase family; KEGG: she:Shewmr4_2780 phage transcriptional regulator, AlpA
YP_001318885.1	PFAM: major facilitator superfamily MFS_1; KEGG: rba:RB3032 hypothetical protein
YP_001318886.1	PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: pha:PSHAa1403 sulfate permease protein
YP_001318888.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: cpf:CPF_1523 sensory box histidine kinase
YP_001318889.1	PFAM: response regulator receiver; ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: pin:Ping_3329 hybrid sensor and regulator fused
YP_001318890.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_1394 two component transcriptional regulator, winged helix family
YP_001318892.1	PFAM: nucleoside recognition domain protein; KEGG: bcl:ABC3053 hypothetical protein
YP_001318893.1	PFAM: nucleoside recognition domain protein; KEGG: rxy:Rxyl_0326 nucleoside recognition
YP_001318894.1	TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; KEGG: cno:NT01CX_0715 riboflavin biosynthesis protein RibD
YP_001318895.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_001318896.1	PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: cno:NT01CX_0713 riboflavin biosynthesis protein RibA
YP_001318897.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_001318898.1	KEGG: mes:Meso_2435 extracellular solute-binding protein, family 1
YP_001318899.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: swo:Swol_1632 sulfate/tungstate uptake family ABC transporter, permease protein
YP_001318900.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_1631 tungsten transporter, ATP binding protein
YP_001318902.1	PFAM: CBS domain containing protein; KEGG: cno:NT01CX_0657 two CBS domain containing protein
YP_001318904.1	KEGG: tte:TTE1897 hypothetical protein
YP_001318905.1	TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: oih:OB2530 attenuator for lytABC and LytR expression
YP_001318906.1	PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: cth:Cthe_0083 serine phosphatase
YP_001318907.1	KEGG: cac:CAC0803 hypothetical protein
YP_001318908.1	TIGRFAM: ABC-type bacteriocin transporter; PFAM: ABC transporter, transmembrane region; ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase; KEGG: cpr:CPR_1082 bacteriocin ABC transporter, ATP-binding/permease protein, putative
YP_001318909.1	PFAM: secretion protein HlyD family protein; KEGG: cpr:CPR_1083 bacteriocin ABC transporter, bacteriocin-binding protein, putative
YP_001318911.1	PFAM: Abortive infection protein; KEGG: tte:TTE2577 predicted metal-dependent membrane protease
YP_001318912.1	PFAM: Abortive infection protein; KEGG: cth:Cthe_2176 abortive infection protein
YP_001318914.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; Tetratricopeptide domain protein; KEGG: cth:Cthe_0533 radical SAM
YP_001318915.1	PFAM: regulatory protein, LuxR; KEGG: rme:Rmet_2534 ATP-dependent transcriptional regulator, MalT-like, LuxR family
YP_001318917.1	PFAM: Abortive infection protein; KEGG: cth:Cthe_2176 abortive infection protein
YP_001318919.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein
YP_001318920.1	PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22)
YP_001318921.1	KEGG: swo:Swol_2451 hypothetical protein
YP_001318926.1	PFAM: Abortive infection protein; KEGG: bca:BCE_A0113 CAAX amino terminal protease family protein
YP_001318927.1	KEGG: mac:MA4628 reverse transcriptase
YP_001318928.1	PFAM: Resolvase, N-terminal domain; KEGG: fra:Francci3_2088 recombinase
YP_001318930.1	PFAM: peptidase M16 domain protein; Peptidase M16C associated domain protein; KEGG: cno:NT01CX_1662 Zn-dependent peptidase, insulinase family
YP_001318931.1	PFAM: regulatory protein, LuxR; Sigma-70, region 4 type 2; KEGG: tte:TTE2508 putative regulator of acetoin metabolism
YP_001318934.1	TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; Oligopeptidase F; KEGG: tte:TTE2488 oligoendopeptidase F
YP_001318935.1	PFAM: GCN5-related N-acetyltransferase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bha:BH1089 hypothetical protein
YP_001318936.1	PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: ctc:CTC00263 predicted catabolite control protein A
YP_001318937.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_001318938.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_001318939.1	binds and unfolds substrates as part of the ClpXP protease
YP_001318940.1	PFAM: Chromate transporter; KEGG: ctc:CTC00661 chromate transport protein
YP_001318941.1	PFAM: Chromate transporter; KEGG: ctc:CTC00660 chromate transport protein
YP_001318942.1	TIGRFAM: Sporulation protease LonB; PFAM: magnesium chelatase, ChlI subunit; AAA ATPase, central domain protein; peptidase S16, lon domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_2742 endopeptidase La
YP_001318943.1	KEGG: cth:Cthe_0082 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase
YP_001318944.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_001318945.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_001318946.1	TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; KEGG: lsl:LSL_1795 shikimate 5-dehydrogenase
YP_001318947.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: tte:TTE0639 permeases of the drug/metabolite transporter (DMT) superfamily
YP_001318948.1	TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: cth:Cthe_0875 anthranilate synthase component I
YP_001318949.1	TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: tma:TM0141 anthranilate synthase component II / anthranilate phosphoribosyltransferase
YP_001318950.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_001318951.1	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water
YP_001318952.1	PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: tte:TTE1579 phosphoribosylanthranilate isomerase
YP_001318953.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_001318954.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_001318955.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_2164 rubredoxin-type Fe(Cys)4 protein
YP_001318956.1	KEGG: bha:BH3246 aminopeptidase
YP_001318957.1	PFAM: protein of unknown function DUF541; KEGG: btl:BALH_3699 hypothetical protein
YP_001318958.1	PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: cac:CAC0669 hypothetical protein
YP_001318959.1	PFAM: protein of unknown function DUF161; KEGG: dsy:DSY3984 hypothetical protein
YP_001318960.1	PFAM: glycoside hydrolase, family 18; SMART: chitinase II; KEGG: cth:Cthe_2895 glycoside hydrolase, family 18
YP_001318961.1	PFAM: TPR repeat-containing protein; ADP-ribosylation/Crystallin J1; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mtp:Mthe_0488 ADP-ribosylation/crystallin J1
YP_001318962.1	PFAM: major facilitator superfamily MFS_1; KEGG: dra:DR1307 major facilitator family protein
YP_001318965.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: aeh:Mlg_1383 heavy metal translocating P-type ATPase
YP_001318968.1	KEGG: mma:MM1839 hypothetical protein
YP_001318969.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE2474 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain
YP_001318970.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE2473 sensory transduction histidine kinase
YP_001318971.1	PFAM: YibE/F family protein; KEGG: cac:CAC2436 hypothetical protein
YP_001318973.1	KEGG: sfr:Sfri_3880 hypothetical protein
YP_001318974.1	PFAM: Ppx/GppA phosphatase; KEGG: ade:Adeh_0658 Ppx/GppA phosphatase
YP_001318975.1	PFAM: Uncharacterized protein UPF0065; KEGG: dsy:DSY0995 hypothetical protein
YP_001318976.1	KEGG: bcl:ABC1014 hypothetical protein
YP_001318977.1	PFAM: protein of unknown function DUF112, transmembrane; KEGG: dsy:DSY0992 hypothetical protein
YP_001318979.1	PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase
YP_001318980.1	PFAM: regulatory protein, MarR; KEGG: bcz:BCZK3880 transcriptional regulator, MarR family
YP_001318981.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ctc:CTC00603 Na+ driven multidrug efflux pump (MviN domain)
YP_001318983.1	PFAM: protein of unknown function DUF1540; KEGG: cac:CAC3540 hypothetical protein
YP_001318984.1	KEGG: ctc:CTC00782 hypothetical protein
YP_001318986.1	TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: dsy:DSY0733 hypothetical protein
YP_001318987.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1521 dipeptide transport system permease protein dppB
YP_001318988.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mma:MM3320 oligopeptide transporter, permease protein
YP_001318989.1	PFAM: extracellular solute-binding protein, family 5; KEGG: ssa:SSA_0493 ABC-type dipeptide/nickel transport system, periplasmic component, putative
YP_001318990.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: fnu:FN1110 dipeptide transport ATP-binding protein dppD
YP_001318991.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mac:MA4253 oligopeptide ABC transporter, ATP-binding protein
YP_001318992.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cth:Cthe_2306 MATE efflux family protein
YP_001318993.1	PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: ssa:SSA_0496 succinylglutamate desuccinylase / aspartoacylase family, putative
YP_001318994.1	PFAM: Protein of unknown function CGGC region; KEGG: ctc:CTC00418 hypothetical protein
YP_001318995.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: ctc:CTC00439 hypothetical protein
YP_001318996.1	PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: cno:NT01CX_0590 cyclic nucleotide-binding domain containing transcriptional regulator, putative
YP_001318997.1	TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: mhu:Mhun_1325 CoA enzyme activase
YP_001318998.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY2734 hypothetical protein
YP_001318999.1	KEGG: cpe:CPE1487 putative sulfonate/nitrate transport system substrate-binding protein
YP_001319000.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_1465 ABC transporter, permease protein, cysTW family, putative
YP_001319001.1	TIGRFAM: nickel ABC transporter, periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein, family 5; KEGG: wsu:WS0984 putative nikA protein
YP_001319002.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0985 nickel transport system permease
YP_001319003.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0986 oligopeptide ABC transporter permease
YP_001319004.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0987 putative oligopeptide transporter
YP_001319005.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0988 oligopeptide ABC transporter ATP-binding protein
YP_001319006.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: wsu:WS0989 DNA-damage-inducible protein
YP_001319007.1	PFAM: histidine kinase, HAMP region domain protein; histidine kinase internal region; KEGG: ctc:CTC01848 two-component sensor kinase YesM
YP_001319008.1	PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: ctc:CTC01849 transcriptional regulatory protein
YP_001319009.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY0154 hypothetical protein
YP_001319010.1	PFAM: protein of unknown function DUF156; KEGG: dsy:DSY0162 hypothetical protein
YP_001319011.1	PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; KEGG: cno:NT01CX_2289 DNA topoisomerase III
YP_001319012.1	PFAM: cation antiporter; KEGG: pfu:PF1153 putative multisubunit Na+/H+ antiporter
YP_001319013.1	PFAM: multiple resistance and pH regulation protein F; KEGG: pfu:PF1152 putative multisubunit Na+/H+ antiporter
YP_001319014.1	TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: pfu:PF1151 putative multisubunit Na+/H+ antiporter
YP_001319017.1	PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: sha:SH2274 multisubunit Na+/H+ antiporter, MnhB subunit
YP_001319018.1	PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: hma:rrnAC3532 putative multicomponent Na+:H+ antiporter subunit C
YP_001319019.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: wol:WD1107 Na+/H+ antiporter subunit, putative
YP_001319020.1	PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: oih:OB0967 transcriptional regulator
YP_001319021.1	KEGG: cac:CAC3379 uncharacterized protein, YQFW B.subtilis homolog
YP_001319022.1	KEGG: oih:OB0968 hypothetical protein
YP_001319023.1	KEGG: oih:OB0969 phosphonate metabolism protein
YP_001319024.1	PFAM: phosphonate metabolism; KEGG: oih:OB0970 phosphonate metabolism protein
YP_001319025.1	PFAM: phosphonate metabolism PhnJ; KEGG: oih:OB0971 phosphonate metabolism protein
YP_001319026.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB0972 phosphonate ABC transporter ATP-binding protein
YP_001319027.1	TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; KEGG: oih:OB0973 phosphonate metabolism protein
YP_001319028.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB0974 phosophonate ABC transporter ATP-binding protein
YP_001319029.1	TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0470 phosphonate transport system permease protein
YP_001319030.1	TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0470 phosphonate transport system permease protein
YP_001319031.1	TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0469 phosphonate transport system ATP-binding protein
YP_001319032.1	KEGG: ctc:CTC00917 transposase
YP_001319033.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: bha:BH0468 phosphonate transport system substrate-binding protein
YP_001319034.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: GAF domain protein; metal-dependent phosphohydrolase, HD region; KEGG: tte:TTE0038 response regulators consisting of a CheY-like receiver domain and an HD-GYP domain
YP_001319035.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: mxa:MXAN_3705 GAF domain/GGDEF domain protein
YP_001319036.1	PFAM: phospholipase D/Transphosphatidylase; KEGG: bcz:BCZK1088 cardiolipin synthetase
YP_001319037.1	KEGG: cth:Cthe_0352 hypothetical protein
YP_001319038.1	KEGG: cth:Cthe_0353 hypothetical protein
YP_001319039.1	TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: mta:Moth_1149 CoA enzyme activase
YP_001319040.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1394 putative manganese transport system ATP-binding protein
YP_001319041.1	PFAM: ABC-3 protein; KEGG: cth:Cthe_0549 ABC-3
YP_001319043.1	KEGG: cno:NT01CX_0906 hypothetical protein
YP_001319044.1	TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; KEGG: ctc:CTC01156 carbon monoxide dehydrogenase beta subunit
YP_001319045.1	KEGG: mkm:Mkms_2198 protein of unknown function DUF1622
YP_001319046.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cth:Cthe_1959 methyltransferase type 11
YP_001319047.1	PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: mta:Moth_0824 transcriptional regulator, Crp/Fnr family
YP_001319048.1	PFAM: protein of unknown function DUF156; KEGG: tte:TTE1664 hypothetical protein
YP_001319049.1	KEGG: tte:TTE2425 hypothetical protein
YP_001319051.1	TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Polynucleotide kinase 3 phosphatase, central region; KEGG: bcl:ABC1953 histidinol-phosphatase
YP_001319052.1	Contains selenocysteine; PFAM: glutaredoxin; KEGG: cth:Cthe_0235 glutaredoxin-like protein, YruB-family
YP_001319053.1	PFAM: SH3, type 3 domain protein; SCP-like extracellular protein; KEGG: bha:BH2878 hypothetical protein
YP_001319054.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Heme NO binding domain protein; KEGG: tte:TTE0680 methyl-accepting chemotaxis protein
YP_001319056.1	TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; KEGG: dps:DP2907 probable 3-methyl-2-oxobutanoate hydroxymethyltransferase
YP_001319057.1	KEGG: mth:MTH964 hypothetical protein
YP_001319058.1	PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: tte:TTE1205 Glutamate dehydrogenase/leucine dehydrogenase
YP_001319059.1	TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pho:PH1043 amidohydrolase
YP_001319060.1	PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; KEGG: chy:CHY_1273 transcriptional regulator, IclR family
YP_001319061.1	PFAM: creatinase; peptidase M24; KEGG: bcl:ABC0020 Xaa-Pro dipeptidase
YP_001319062.1	PFAM: Asp/Glu racemase; KEGG: pho:PH0985 arylmalonate decarboxylase
YP_001319063.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: mac:MA3243 integral membrane protein
YP_001319064.1	PFAM: GCN5-related N-acetyltransferase; KEGG: oih:OB0365 hypothetical protein
YP_001319065.1	catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin
YP_001319066.1	PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: bat:BAS3623 pyruvate ferredoxin oxidoreductase, alpha subunit, putative
YP_001319067.1	TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; KEGG: cno:NT01CX_1355 tryptophanyl-tRNA synthetase
YP_001319068.1	PFAM: small acid-soluble spore protein, alpha/beta type
YP_001319069.1	PFAM: protein of unknown function DUF881; KEGG: tte:TTE0278 hypothetical protein
YP_001319072.1	PFAM: amino acid-binding ACT domain protein; MgtC/SapB transporter; KEGG: cth:Cthe_1919 MgtC/SapB transporter
YP_001319073.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_001319078.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: hal:VNG0727C hypothetical protein
YP_001319079.1	catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin
YP_001319080.1	PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tte:TTE0961 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
YP_001319081.1	PFAM: membrane-bound metal-dependent hydrolase; KEGG: cac:CAC0507 predicted metal-dependent membrane hydrolase
YP_001319082.1	PFAM: branched-chain amino acid transport; KEGG: oih:OB1120 hypothetical protein
YP_001319083.1	PFAM: AzlC family protein; KEGG: oih:OB1119 branched-chain amino acid transporter
YP_001319084.1	PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sth:STH2778 hypothetical protein
YP_001319085.1	PFAM: Domain of unknown function DUF1893; KEGG: bfr:BF4297 putative TonB-dependent outer membrane receptor
YP_001319087.1	SMART: RNA binding S1 domain protein; KEGG: cno:NT01CX_0180 S1 RNA binding domain
YP_001319088.1	PFAM: protein of unknown function DUF322; KEGG: sth:STH1852 putative alkaline-shock protein
YP_001319089.1	KEGG: ddi:DDB_0231185 actin-binding protein
YP_001319090.1	TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: cac:CAC1747 acyl carrier protein, ACP
YP_001319091.1	PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: chy:CHY_2597 putative rubredoxin
YP_001319092.1	TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Pi-cotransporter; PhoU family protein; KEGG: cno:NT01CX_1154 Na/Pi cotransporter family protein
YP_001319093.1	TIGRFAM: cyanophycinase; PFAM: peptidase S51, dipeptidase E; KEGG: swo:Swol_1351 cyanophycinase
YP_001319094.1	catalyze the formation of cyanophycin which may act to store excess nitrogen
YP_001319095.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cac:CAC0263 phosphoserine phosphatase related protein
YP_001319096.1	PFAM: regulatory protein, ArsR; KEGG: dsy:DSY4143 hypothetical protein
YP_001319097.1	PFAM: permease; KEGG: mmp:MMP0202 hypothetical protein
YP_001319098.1	TIGRFAM: redox-active disulfide protein 2; KEGG: chy:CHY_1096 redox-active disulfide protein 2
YP_001319099.1	PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase
YP_001319100.1	PFAM: ApbE family lipoprotein; KEGG: cpe:CPE2227 thiamin biosynthesis lipoprotein
YP_001319101.1	PFAM: GCN5-related N-acetyltransferase
YP_001319102.1	PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: swo:Swol_1663 ErfK/YbiS/YcfS/YnhG
YP_001319103.1	PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: cac:CAC1432 undecaprenyl pyrophosphate synthase related enzyme
YP_001319104.1	KEGG: chy:CHY_0565 putative mercuric transport protein, selenocysteine-containing
YP_001319105.1	PFAM: FMN-binding domain protein; KEGG: dsy:DSY3139 putative fumarate reductase flavoprotein subunit
YP_001319106.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bca:BCE_3546 amino acid ABC transporter-like protein
YP_001319107.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bca:BCE_3547 amino acid ABC transproter, permease protein VC0009 [imported]
YP_001319108.1	PFAM: extracellular solute-binding protein, family 3; KEGG: cpr:CPR_2062 glutamine-binding periplasmic protein of glutamine ABC transporter
YP_001319109.1	PFAM: amino acid-binding ACT domain protein; MgtC/SapB transporter; KEGG: cth:Cthe_1919 MgtC/SapB transporter
YP_001319111.1	PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase
YP_001319112.1	TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; KEGG: cac:CAC0495 thiamine monophosphate synthase
YP_001319113.1	PFAM: hydroxyethylthiazole kinase; KEGG: ctc:CTC01752 hydroxyethylthiazole kinase
YP_001319114.1	TIGRFAM: phosphomethylpyrimidine kinase; PFAM: protein of unknown function UPF0031; Phosphomethylpyrimidine kinase type-1; KEGG: ctc:CTC01753 hydroxymethylpyrimidine kinase
YP_001319115.1	TIGRFAM: thiW protein; KEGG: ctc:CTC01754 hypothetical protein
YP_001319116.1	PFAM: dehydrogenase, E1 component; KEGG: ayw:AYWB_136 pyruvate dehydrogenase E1 component alpha subunit
YP_001319117.1	PFAM: Transketolase, central region; Transketolase domain protein; KEGG: mhp:MHP7448_0116 pyruvate dehydrogenase
YP_001319118.1	PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; KEGG: bcl:ABC2418 pyruvate dehydrogenase E2 component
YP_001319119.1	TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ayw:AYWB_139 dihydrolipoamide dehydrogenase
YP_001319120.1	PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sat:SYN_00230 response regulator receiver domain and a sigma factor phosphatase domain
YP_001319121.1	PFAM: GAF domain protein; histidine kinase, HAMP region domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: gme:Gmet_0849 metal dependent phosphohydrolase
YP_001319122.1	PFAM: CAT RNA-binding domain protein; PRD domain protein; KEGG: bcl:ABC0193 transcriptional antiterminator, BglG family
YP_001319123.1	TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; KEGG: cte:CT2211 phosphocarrier protein HPr
YP_001319124.1	TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein, mobile region; PEP-utilising protein domain protein; KEGG: tte:TTE2334 phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria)
YP_001319125.1	PFAM: regulatory protein, IclR; Transcriptional regulator IclR-like; KEGG: cno:NT01CX_1476 transcription regulator (IclR family) BH2137
YP_001319126.1	TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: cno:NT01CX_1477 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase, putative
YP_001319127.1	PFAM: PfkB domain protein; KEGG: bth:BT_0488 2-dehydro-3-deoxygluconokinase
YP_001319128.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: cno:NT01CX_1479 transcriptional regulator, GntR family, putative
YP_001319129.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: cno:NT01CX_1479 transcriptional regulator, GntR family, putative
YP_001319130.1	KEGG: dsy:DSY3247 hypothetical protein
YP_001319131.1	PFAM: Uncharacterized protein UPF0065; KEGG: reh:H16_B1820 probable extra-cytoplasmic solute receptor
YP_001319132.1	PFAM: protein of unknown function DUF112, transmembrane; KEGG: jan:Jann_1159 protein of unknown function DUF112, transmembrane
YP_001319133.1	PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: cno:NT01CX_1480 dihydroxyacid dehydratase
YP_001319134.1	PFAM: glutamine synthetase, catalytic region; KEGG: cno:NT01CX_0655 glutamine synthetase
YP_001319135.1	KEGG: gfo:orf3266 hypothetical protein
YP_001319137.1	KEGG: ctc:CTC00445 putative metal dependent hydrolase
YP_001319138.1	PFAM: SNARE associated Golgi protein; KEGG: vfi:VFA0098 transporter
YP_001319139.1	PFAM: GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: syn:slr2100 two-component response regulator
YP_001319140.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; SMART: PAC repeat-containing protein; KEGG: cno:NT01CX_0224 sensory transduction histidine kinase
YP_001319141.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_2574 binding-protein-dependent transport systems inner membrane component
YP_001319142.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: cno:NT01CX_0224 sensory transduction histidine kinase
YP_001319143.1	KEGG: dsy:DSY1430 hypothetical protein
YP_001319144.1	KEGG: cpf:CPF_1814 hypothetical protein
YP_001319145.1	PFAM: Accessory gene regulator B; KEGG: cpf:CPF_1813 putative accessory gene regulator protein B
YP_001319146.1	PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: cno:NT01CX_0653 peptidyl-prolyl cis-trans isomerase
YP_001319147.1	TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: swo:Swol_1192 hypothetical protein
YP_001319148.1	PFAM: spore germination B3 GerAC family protein; KEGG: dsy:DSY4477 hypothetical protein
YP_001319149.1	PFAM: GerA spore germination protein; KEGG: cac:CA_P0020 spore germination protein, GrkA
YP_001319150.1	PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: cno:NT01CX_1710 site-specific recombinases, DNA invertase Pin-like protein
YP_001319152.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: mta:Moth_0422 TRAP dicarboxylate transporter, DctP subunit
YP_001319153.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: mta:Moth_0423 tripartite ATP-independent periplasmic transporter, DctQ component
YP_001319154.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: mta:Moth_0424 TRAP dicarboxylate transporter-DctM subunit
YP_001319155.1	catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism
YP_001319156.1	catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate
YP_001319157.1	PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: mta:Moth_0429 mannitol dehydrogenase
YP_001319158.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bha:BH1062 transcriptional regulator (GntR family)
YP_001319159.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1707 ABC transporter ATP-binding protein
YP_001319160.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: lwe:lwe2036 cold shock-like protein
YP_001319161.1	KEGG: oih:OB1065 hypothetical protein
YP_001319162.1	PFAM: beta-lactamase domain protein; KEGG: tte:TTE2430 predicted hydrolase of metallo-beta-lactamase fold
YP_001319163.1	KEGG: tte:TTE2431 hypothetical protein
YP_001319164.1	KEGG: cth:Cthe_0921 hypothetical protein
YP_001319165.1	PFAM: glycoside hydrolase, family 3 domain protein; KEGG: cth:Cthe_0322 glycoside hydrolase, family 3-like protein
YP_001319166.1	TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; KEGG: chy:CHY_0704 glutamine synthetase
YP_001319167.1	PFAM: response regulator receiver; KEGG: bha:BH2751 two-component response regulator
YP_001319168.1	PFAM: malic protein domain protein; malic protein, NAD-binding; KEGG: bce:BC4604 NAD-dependent malic enzyme
YP_001319169.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cno:NT01CX_0172 oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase
YP_001319171.1	PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase
YP_001319175.1	PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase
YP_001319177.1	KEGG: dsy:DSY4612 hypothetical protein
YP_001319178.1	TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: tte:TTE0176 uncharacterized membrane protein, putative virulence factor
YP_001319179.1	PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: dsy:DSY3258 hypothetical protein
YP_001319180.1	PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: cac:CAC0972 isocitrate dehydrogenase
YP_001319181.1	Catalyzes the conversion of citrate to isocitrate
YP_001319182.1	in Methanococcus jannaschii this protein catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate; functions in alphaketosuberate synthesis which is a precursor in coenzyme B and biotin synthesis
YP_001319184.1	PFAM: regulatory protein GntR, HTH; protein of unknown function UPF0074; KEGG: gka:GK1620 transcriptional regulator (GntR family)
YP_001319185.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK1621 ABC transporter (ATP-binding protein)
YP_001319186.1	KEGG: gka:GK1622 hypothetical protein
YP_001319187.1	TIGRFAM: phosphonate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0440 phosphonate transport system ATP-binding protein
YP_001319188.1	TIGRFAM: phosphonate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pau:PA14_20330 phosphonate ABC tranporter permease protein
YP_001319189.1	TIGRFAM: phosphonate ABC transporter, periplasmic phosphonate-binding protein; KEGG: maq:Maqu_3992 phosphonate ABC transporter, periplasmic phosphonate-binding protein
YP_001319190.1	PFAM: cytoplasmic chaperone TorD family protein; KEGG: mta:Moth_1390 cytoplasmic chaperone TorD
YP_001319191.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: sth:STH713 anaerobic dimethyl sulfoxide reductase subunit A
YP_001319192.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mta:Moth_1388 4Fe-4S ferredoxin, iron-sulfur binding
YP_001319193.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: chy:CHY_0869 iron-sulfur cluster-binding protein
YP_001319194.1	KEGG: dsy:DSY4458 hypothetical protein
YP_001319195.1	PFAM: HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dsy:DSY2873 hypothetical protein
YP_001319196.1	KEGG: llm:llmg_1314 conserved hypothetical protein
YP_001319198.1	KEGG: dsy:DSY0802 hypothetical protein
YP_001319199.1	PFAM: regulatory protein, TetR; KEGG: mmp:MMP0840 transcriptional regulator, TetR family member
YP_001319200.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cno:NT01CX_1548 HlyD family secretion protein, putative
YP_001319201.1	PFAM: acriflavin resistance protein; KEGG: dsy:DSY2068 hypothetical protein
YP_001319202.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cno:NT01CX_1509 integral membrane protein with CBS domains
YP_001319204.1	PFAM: aminotransferase, class V; KEGG: dsy:DSY0801 hypothetical protein
YP_001319205.1	PFAM: Ferritin, Dps family protein; KEGG: chy:CHY_0102 ferritin
YP_001319206.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: cac:CAC0698 predicted hydrolase of the HAD superfamily
YP_001319207.1	TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC01522 fumarate reductase flavoprotein
YP_001319208.1	PFAM: PfkB domain protein; KEGG: yhfQ; putative kinase
YP_001319210.1	KEGG: cpe:CPE1290 hypothetical protein
YP_001319211.1	KEGG: cpf:CPF_1917 CapA domain protein
YP_001319212.1	PFAM: Xanthine/uracil/vitamin C permease; KEGG: bha:BH1513 hypothetical protein
YP_001319213.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_001319214.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_001319215.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein
YP_001319216.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein
YP_001319217.1	TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: cth:Cthe_1329 putative CoA-substrate-specific enzyme activase
YP_001319218.1	PFAM: Hemerythrin HHE cation binding domain protein; KEGG: ctc:CTC01607 hypothetical protein
YP_001319219.1	KEGG: lwe:lwe1368 hypothetical protein
YP_001319220.1	KEGG: cno:NT01CX_0507 hypothetical protein
YP_001319221.1	KEGG: cpe:CPE1479 hypothetical protein
YP_001319223.1	PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: sth:STH1431 small acid-soluble spore protein
YP_001319224.1	PFAM: cell cycle protein; KEGG: tte:TTE0905 Bacterial cell division membrane protein
YP_001319225.1	TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: cth:Cthe_1939 magnesium transporter
YP_001319226.1	TIGRFAM: Spore cortex-lytic enzyme SleB; PFAM: Peptidoglycan-binding domain 1 protein; cell wall hydrolase, SleB; KEGG: sth:STH2958 spore cortex-lytic enzyme precursor
YP_001319227.1	TIGRFAM: Spore germination YpeB; PFAM: Propeptide, PepSY amd peptidase M4; KEGG: cth:Cthe_2416 propeptide, PepSY amd peptidase M4
YP_001319228.1	KEGG: bce:BC0877 IG hypothetical 16724
YP_001319229.1	PFAM: Collagen triple helix repeat; KEGG: gka:GK2100 hypothetical protein
YP_001319230.1	KEGG: cth:Cthe_2090 hypothetical protein
YP_001319231.1	PFAM: transposase, IS4 family protein; KEGG: wol:WD0563 transposase, IS4 family
YP_001319232.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: ppd:Ppro_0307 4Fe-4S ferredoxin, iron-sulfur binding domain protein
YP_001319234.1	PFAM: phosphoglucose isomerase (PGI); KEGG: btl:BALH_4440 glucose-6-phosphate isomerase
YP_001319235.1	TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase; KEGG: cno:NT01CX_0654 glutamate racemase
YP_001319236.1	PFAM: GAF domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type, transmembrane region; KEGG: gme:Gmet_2698 histidine kinase internal region
YP_001319237.1	PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: mta:Moth_1964 transcriptional regulator, LytR/AlgR family
YP_001319238.1	KEGG: nph:NP1830A hypothetical protein
YP_001319239.1	PFAM: carbon starvation protein CstA; KEGG: bcl:ABC1450 carbon starvation-induced protein
YP_001319240.1	KEGG: mta:Moth_2201 hypothetical protein
YP_001319241.1	TIGRFAM: dipeptidase, putative; PFAM: peptidase M20; KEGG: ppr:PBPRA2746 hypothetical protein
YP_001319242.1	PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: ctc:CTC00197 stage V sporulation protein B
YP_001319243.1	PFAM: FMN-binding domain protein; KEGG: tte:TTE2480 major membrane immunogen precursor
YP_001319246.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_001319247.1	TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: sat:SYN_03523 pyruvate formate-lyase activating enzyme
YP_001319249.1	PFAM: protein of unknown function DUF606; KEGG: bce:BC3451 hypothetical membrane spanning protein
YP_001319250.1	KEGG: btl:BALH_3104 possible membrane-spanning protein
YP_001319251.1	PFAM: cyclic nucleotide-binding; KEGG: bce:BC3449 catabolite gene activator
YP_001319252.1	KEGG: cph:Cpha266_0062 NADPH-dependent FMN reductase
YP_001319253.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC00811 fumarate reductase flavoprotein subunit precursor
YP_001319254.1	PFAM: regulatory protein, MerR; KEGG: dsy:DSY2796 hypothetical protein
YP_001319257.1	PFAM: NMT1/THI5 like; KEGG: ctc:CTC00407 ABC transporter substrate-binding protein
YP_001319259.1	TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ctc:CTC00117 phosphatidylglycerophosphate synthase
YP_001319261.1	TIGRFAM: valyl-tRNA synthetase; KEGG: cth:Cthe_0324 valyl-tRNA synthetase
YP_001319262.1	TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; KEGG: tte:TTE0783 Folylpolyglutamate synthase
YP_001319263.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: tte:TTE0105 predicted Co/Zn/Cd cation transporters
YP_001319264.1	PFAM: phage integrase family protein; KEGG: gfo:orf943 phage integrase family protein
YP_001319265.1	KEGG: sav:SAV2216 hypothetical protein
YP_001319267.1	KEGG: rru:Rru_A0261 hypothetical protein
YP_001319268.1	KEGG: mba:Mbar_A1733 reverse transcriptase
YP_001319269.1	PFAM: Resolvase, N-terminal domain; KEGG: fra:Francci3_2088 recombinase
YP_001319270.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: mbu:Mbur_2039 RNA-directed DNA polymerase
YP_001319272.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC3374 predicted acetyltransferase
YP_001319273.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cac:CAC2827 S-adenosylmethionine-dependent methyltransferase
YP_001319274.1	KEGG: mmp:MMP0794 hypothetical protein
YP_001319275.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mhu:Mhun_1280 4Fe-4S ferredoxin, iron-sulfur binding
YP_001319277.1	PFAM: beta-lactamase domain protein; KEGG: cpf:CPF_1168 metallo-beta-lactamase family protein
YP_001319278.1	PFAM: GCN5-related N-acetyltransferase; KEGG: ljo:LJ1236 hypothetical protein
YP_001319279.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bth:BT_1464 putative acetyltransferase, (GNAT) family
YP_001319280.1	PFAM: ThiJ/PfpI domain protein; KEGG: smu:SMU.1682c conserved hypothetical protein; possible intracellular protease
YP_001319281.1	PFAM: pentapeptide repeat protein; KEGG: cac:CAC0073 uncharacterized protein, ortholog of YYBG B.subtilis
YP_001319282.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bld:BLi00525 YdaF
YP_001319284.1	PFAM: VanW family protein; KEGG: bce:BC2985 vancomycin B-type resistance protein VanW
YP_001319286.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: lac:LBA0355 transcriptional regulator
YP_001319288.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mst:Msp_1385 hypothetical protein
YP_001319289.1	PFAM: beta-lactamase; KEGG: btk:BT9727_2440 alkaline D-peptidase (D-stereospecific peptide hydrolase)
YP_001319290.1	PFAM: protein of unknown function DUF1200; KEGG: oih:OB1702 hypothetical protein
YP_001319291.1	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: ape:APE_2540.1 putative ala-tRNApro hydrolase ProX
YP_001319292.1	PFAM: protein of unknown function DUF1697; KEGG: mca:MCA2327 hypothetical protein
YP_001319293.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vpa:VPA0302 hypothetical protein
YP_001319294.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY3988 hypothetical protein
YP_001319295.1	KEGG: dsy:DSY0347 hypothetical protein
YP_001319296.1	KEGG: cth:Cthe_2121 hypothetical protein
YP_001319297.1	PFAM: catalytic domain of components of various dehydrogenase complexes; KEGG: bha:BH1847 hypothetical protein
YP_001319298.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mac:MA4347 menaquinone biosynthesis methyltransferase (2-heptaprenyl-1,4-naphthoquinone methyltransferase)
YP_001319299.1	PFAM: HEAT domain containing protein; KEGG: chu:CHU_1766 conserved hypothetical protein; possible DNA alkylation repair enzyme
YP_001319300.1	PFAM: phospholipid/glycerol acyltransferase; KEGG: cno:NT01CX_1393 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative
YP_001319301.1	KEGG: cac:CA_P0152 hypothetical protein, CF-6 family
YP_001319302.1	KEGG: mva:Mvan_1198 conserved hypothetical protein
YP_001319303.1	PFAM: Hemerythrin HHE cation binding domain protein; Domain of unknown function DUF1858; KEGG: pgi:PG0686 hypothetical protein
YP_001319304.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_001319305.1	PFAM: UspA domain protein; KEGG: mma:MM1452 universal stress protein
YP_001319306.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: sfu:Sfum_2209 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
YP_001319307.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY3380 hypothetical protein
YP_001319308.1	PFAM: Pirin domain protein; KEGG: cac:CAC1492 uncharacterized protein, YhhW/pirin family
YP_001319309.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bce:BC0239 ABC transporter ATP-binding protein uup
YP_001319310.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bat:BAS2522 acetyltransferase, GNAT family
YP_001319311.1	PFAM: ThiJ/PfpI domain protein; KEGG: bca:BCE_2883 hypothetical protein
YP_001319313.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC2509 predicted acetyltransferase
YP_001319315.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC0224 response regulator (CheY-like receiver domain and HTH DNA-binding domain)
YP_001319316.1	PFAM: ATP-binding region, ATPase domain protein; KEGG: cac:CAC0225 sensory transduction histidine kinase
YP_001319317.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC0226 ABC transporter, ATP-binding protein
YP_001319318.1	PFAM: protein of unknown function DUF214; KEGG: btl:BALH_4398 ABC transporter, permease component
YP_001319319.1	KEGG: swo:Swol_2182 alkyl hydroperoxide reductase
YP_001319320.1	KEGG: swo:Swol_2181 peroxiredoxin-like protein
YP_001319321.1	PFAM: protein of unknown function DUF134; KEGG: dsy:DSY3441 hypothetical protein
YP_001319322.1	PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: tte:TTE1893 hypothetical protein
YP_001319323.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Cobyrinic acid a,c-diamide synthase; KEGG: dsy:DSY3440 hypothetical protein
YP_001319324.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Cobyrinic acid a,c-diamide synthase; KEGG: dsy:DSY3439 hypothetical protein
YP_001319325.1	PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dsy:DSY3437 hypothetical protein
YP_001319326.1	KEGG: mka:MK0529 HAD family hydrolase, a fragment
YP_001319327.1	PFAM: Silent information regulator protein Sir2; KEGG: oih:OB3159 transcriptional regulator
YP_001319328.1	PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22)
YP_001319329.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein
YP_001319331.1	PFAM: ThiJ/PfpI domain protein; KEGG: bca:BCE_2883 hypothetical protein
YP_001319334.1	PFAM: regulatory protein, MarR; transcriptional regulator TrmB; KEGG: bat:BAS0304 transcriptional regulator, MarR family
YP_001319335.1	TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; KEGG: bcz:BCZK0288 arsenite-transporting ATPase
YP_001319336.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mva:Mvan_0776 ABC transporter-related protein
YP_001319337.1	PFAM: ABC-2 type transporter; KEGG: dsy:DSY0913 hypothetical protein
YP_001319338.1	KEGG: dsy:DSY0914 hypothetical protein
YP_001319339.1	PFAM: amidinotransferase; KEGG: cpe:CPE0344 hypothetical protein
YP_001319341.1	PFAM: cell wall hydrolase/autolysin; KEGG: mta:Moth_1790 copper amine oxidase-like
YP_001319344.1	PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0779 copper amine oxidase-like protein
YP_001319346.1	PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: bha:BH3693 hypothetical protein
YP_001319347.1	KEGG: tte:TTE0861 hypothetical protein
YP_001319349.1	PFAM: NADPH-dependent FMN reductase; KEGG: gsu:GSU0179 NADPH-dependent FMN reductase domain protein
YP_001319350.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: pfu:PF0752 thioredoxin peroxidase
YP_001319351.1	PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0779 copper amine oxidase-like protein
YP_001319352.1	PFAM: transposase, IS4 family protein; KEGG: swo:Swol_2451 hypothetical protein
YP_001319353.1	KEGG: nca:Noca_2212 putative ABC antibiotics transporter
YP_001319354.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro06063 probable ABC transporter, ATP-binding component
YP_001319355.1	PFAM: regulatory protein, TetR; KEGG: dsy:DSY3670 hypothetical protein
YP_001319356.1	KEGG: bcl:ABC1535 hypothetical protein
YP_001319357.1	PFAM: helix-turn-helix- domain containing protein, AraC type; transcription activator, effector binding; KEGG: bat:BAS4724 transcriptional regulator, AraC family
YP_001319358.1	PFAM: ubiquitin-associated- domain-containing protein; KEGG: cac:CAC1297 N-terminal fragment of elongation factor Ts
YP_001319359.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dsy:DSY1143 hypothetical protein
YP_001319360.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE1017 sensory transduction histidine kinase
YP_001319362.1	PFAM: formylmethanofuran dehydrogenase, subunit E region; KEGG: dsy:DSY0393 formylmethanofuran dehydrogenase subunit E
YP_001319363.1	modulates transcription in response to the NADH/NAD(+) redox state
YP_001319364.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: fnu:FN0197 methyltransferase
YP_001319365.1	PFAM: extracellular solute-binding protein, family 5; KEGG: mma:MM2460 dipeptide/oligopeptide-binding protein
YP_001319366.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY3210 hypothetical protein
YP_001319367.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY3209 hypothetical protein
YP_001319368.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: dsy:DSY3208 hypothetical protein
YP_001319369.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cpf:CPF_0724 acetyltransferase, GNAT family
YP_001319370.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: btl:BALH_1732 DNA-binding response regulator
YP_001319371.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: gka:GK0907 two-component sensor histidine kinase
YP_001319372.1	KEGG: oih:OB0251 hypothetical protein
YP_001319373.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3360 hypothetical protein
YP_001319374.1	PFAM: acriflavin resistance protein; KEGG: dsy:DSY3359 hypothetical protein
YP_001319375.1	PFAM: transposase, IS111A/IS1328/IS1533; KEGG: gka:GK3301 transposase
YP_001319376.1	PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising protein, mobile region; KEGG: cac:CAC0534 phosphoenolpyruvate synthase (gene pps)
YP_001319377.1	KEGG: tko:TK1044 predicted permease, major facilitator superfamily
YP_001319379.1	PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: gka:GK2252 transposase
YP_001319380.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sat:SYN_00718 lactoylglutathione lyase
YP_001319381.1	KEGG: swo:Swol_1096 hypothetical protein
YP_001319382.1	KEGG: cth:Cthe_3229 transposase, IS4
YP_001319383.1	TIGRFAM: cell wall/surface repeat protein; PFAM: S-layer domain protein; Cadherin; KEGG: ter:Tery_3470 hemolysin-type calcium-binding region
YP_001319384.1	KEGG: fra:Francci3_4013 transposase, IS4
YP_001319385.1	KEGG: sth:STH1112 ABC transporter ATP-binding protein
YP_001319386.1	KEGG: cth:Cthe_3229 transposase, IS4
YP_001319387.1	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: fnu:FN0673 EbsC protein
YP_001319389.1	PFAM: Abortive infection protein; KEGG: bam:Bamb_3325 hypothetical protein
YP_001319390.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pgi:PG1175 ABC transporter, ATP-binding protein, putative
YP_001319392.1	PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: btl:BALH_2995 transcriptional regulator, GntR family
YP_001319393.1	KEGG: vfi:VF1078 hypothetical protein
YP_001319394.1	TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ser:SERP2381 NADH:flavin oxidoreductase/fumarate reductase, flavoprotein subunit, putative
YP_001319395.1	PFAM: regulatory protein, MerR; KEGG: dsy:DSY2796 hypothetical protein
YP_001319396.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0540 ATPase components of ABC transporters with duplicated ATPase domains
YP_001319397.1	PFAM: protein of unknown function DUF214; KEGG: ctc:CTC00486 ABC transporter permease protein
YP_001319398.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY3656 hypothetical protein
YP_001319399.1	TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cth:Cthe_1762 efflux transporter, RND family, MFP subunit
YP_001319400.1	KEGG: bha:BH0784 two-component sensor histidine kinase
YP_001319401.1	PFAM: ATP-binding region, ATPase domain protein; KEGG: bha:BH0784 two-component sensor histidine kinase
YP_001319402.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: bha:BH2123 two-component response regulator
YP_001319403.1	PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: bha:BH3693 hypothetical protein
YP_001319404.1	PFAM: beta-lactamase; KEGG: btl:BALH_2998 alkaline D-peptidase and alkaline D-peptidase fusion
YP_001319405.1	PFAM: nucleoside recognition domain protein; KEGG: oih:OB3031 hypothetical protein
YP_001319406.1	PFAM: transcriptional regulator PadR family protein; KEGG: dsy:DSY2245 hypothetical protein
YP_001319407.1	PFAM: cell cycle protein; KEGG: lin:lin0441 hypothetical protein
YP_001319409.1	TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: dsy:DSY1012 hypothetical protein
YP_001319411.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: wsu:WS0964 hypothetical protein
YP_001319412.1	PFAM: helix-turn-helix domain protein; KEGG: mgm:Mmc1_2222 PAS/PAC sensor hybrid histidine kinase
YP_001319413.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY3380 hypothetical protein
YP_001319414.1	KEGG: vfi:VFA0631 hypothetical protein
YP_001319416.1	PFAM: protein of unknown function DUF81; KEGG: ilo:IL0754 predicted permease
YP_001319417.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bcz:pE33L466_0363 possible ABC transporter, periplasmic protein
YP_001319418.1	KEGG: bca:BCE_5447 hypothetical protein
YP_001319419.1	PFAM: helix-turn-helix domain protein; KEGG: cac:CAC3247 predicted transcriptional regulator, LacI/xre family
YP_001319420.1	KEGG: fra:Francci3_4013 transposase, IS4
YP_001319421.1	PFAM: pentapeptide repeat protein; KEGG: dps:DP2447 similar to McbG protein
YP_001319422.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: tfu:Tfu_2950 regulatory protein, LuxR:response regulator receiver
YP_001319424.1	PFAM: conserved hypothetical protein 245; KEGG: bca:BCE_5079 membrane protein, putative
YP_001319425.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0194 putative ABC transport system ATP-binding protein
YP_001319426.1	PFAM: transcriptional regulator PadR family protein; KEGG: bha:BH0575 hypothetical protein
YP_001319427.1	TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: chu:CHU_3423 chromate transporter, permease component
YP_001319428.1	TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: tte:TTE0793 hypothetical protein
YP_001319429.1	KEGG: cac:CAC2385 hypothetical protein
YP_001319430.1	PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: sth:STH1430 small acid-soluble spore protein
YP_001319431.1	PFAM: phage integrase family protein; KEGG: ser:SERP2506 transposase A
YP_001319432.1	PFAM: phage integrase family protein; KEGG: ser:SERP2507 transposase B
YP_001319433.1	PFAM: phage integrase family protein; KEGG: sep:SE1612 transposition regulatory protein TnpB
YP_001319434.1	KEGG: sar:SAR0725 Tn554 transposase C
YP_001319435.1	PFAM: helix-turn-helix domain protein; KEGG: cyb:CYB_0663 hypothetical protein
YP_001319436.1	KEGG: cch:Cag_0911 hypothetical protein
YP_001319437.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: mbu:Mbur_2039 RNA-directed DNA polymerase
YP_001319438.1	PFAM: Resolvase, N-terminal domain; KEGG: fra:Francci3_2088 recombinase
YP_001319439.1	KEGG: mac:MA4228 reverse transcriptase
YP_001319440.1	KEGG: cth:Cthe_2773 integrase, catalytic region
YP_001319441.1	KEGG: cth:Cthe_0590 transposase IS3/IS911
YP_001319443.1	TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: blo:BL1782 modification (methylase) protein of type I restriction-modification system
YP_001319444.1	PFAM: restriction modification system DNA specificity domain; KEGG: lin:lin0523 hypothetical protein
YP_001319445.1	TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; KEGG: lca:LSEI_2095 type I site-specific restriction-modification system, R (restriction) subunit related helicase
YP_001319446.1	PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: she:Shewmr4_3209 putative transcriptional regulator
YP_001319447.1	KEGG: mac:MA2602 hypothetical protein
YP_001319448.1	PFAM: transposase, mutator type; KEGG: cth:Cthe_3207 transposase, mutator type
YP_001319449.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tte:TTE0796 uncharacterized Fe-S protein
YP_001319450.1	PFAM: polysaccharide deacetylase; KEGG: cth:Cthe_0175 polysaccharide deacetylase
YP_001319451.1	PFAM: Na+/Pi-cotransporter; KEGG: cpf:CPF_2677 Na/Pi-cotransporter family protein/PhoU family protein
YP_001319452.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001319453.1	PFAM: polysaccharide deacetylase; KEGG: ctc:CTC02298 chitooligosaccharide deacetylase
YP_001319454.1	TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; KEGG: bce:BC3914 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase
YP_001319455.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_001319456.1	PFAM: GAF domain protein; KEGG: tte:TTE1743 GAF domain-containing protein
YP_001319457.1	TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: cno:NT01CX_1811 hypoxanthine phosphoribosyltransferase
YP_001319458.1	TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: syf:Synpcc7942_0256 peptidase M20D, amidohydrolase
YP_001319459.1	PFAM: Abortive infection protein; KEGG: tte:TTE2577 predicted metal-dependent membrane protease
YP_001319460.1	KEGG: aci:ACIAD0613 conserved hypothetical protein; putative phospholipase D endonuclease domain
YP_001319461.1	KEGG: cpr:CPR_1870 small, acid-soluble spore protein, alpha/beta family
YP_001319462.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bce:BC4326 methyltransferase
YP_001319463.1	PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: efa:EF1367 cold-shock domain family protein
YP_001319464.1	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers
YP_001319465.1	PFAM: Sporulation protein YtxC; KEGG: cth:Cthe_2071 hypothetical protein
YP_001319466.1	KEGG: mta:Moth_1760 hypothetical protein
YP_001319467.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_001319468.1	TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: tte:TTE1992 ATP-dependent Zn proteases
YP_001319469.1	TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: cpr:CPR_1858 translation initiation factor IF-3
YP_001319470.1	PFAM: ribosomal protein L35; KEGG: cno:NT01CX_1762 ribosomal protein L35
YP_001319471.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_001319472.1	TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: tte:TTE0196 trk-type K+ transport systems, membrane components
YP_001319473.1	PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: cpf:CPF_2142 putative potassium uptake protein
YP_001319474.1	TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: cth:Cthe_1222 RNA methyltransferase, TrmH family, group 3
YP_001319475.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_001319476.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_001319477.1	PFAM: protein of unknown function DUF710; KEGG: cac:CAC2355 hypothetical protein
YP_001319478.1	PFAM: peptidase U32; KEGG: tte:TTE1686 collagenase and related proteases
YP_001319479.1	PFAM: regulatory protein, MarR; iron dependent repressor; KEGG: cth:Cthe_1402 iron (metal) dependent repressor, DtxR family
YP_001319480.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1389 putative manganese transport system ATP-binding protein
YP_001319481.1	PFAM: ABC-3 protein; KEGG: bha:BH1390 putative manganese transport system permease protein
YP_001319482.1	PFAM: periplasmic solute binding protein; KEGG: bha:BH0516 putative manganese transport system substrate-binding protein
YP_001319483.1	KEGG: tfu:Tfu_0754 putative ATP-binding protein
YP_001319484.1	PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: nfa:nfa25650 putative decarboxylase
YP_001319485.1	PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; SMART: Rhodanese domain protein; KEGG: nfa:nfa25640 hypothetical protein
YP_001319486.1	PFAM: aminotransferase, class V; KEGG: nfa:nfa25670 hypothetical protein
YP_001319487.1	KEGG: hwa:HQ2306A ABC-type cobalt transport system, permease protein I
YP_001319488.1	PFAM: cobalt transport protein; KEGG: ter:Tery_2781 cobalt ABC transporter, inner membrane subunit CbiQ
YP_001319489.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mac:MA4020 ABC transporter, ATP-binding protein
YP_001319490.1	PFAM: SNARE associated Golgi protein; KEGG: vfi:VFA0098 transporter
YP_001319491.1	KEGG: fnu:FN1852 hypothetical protein
YP_001319492.1	PFAM: Excinuclease ABC, C subunit domain protein; KEGG: cno:NT01CX_2293 endo/excinuclease domain protein
YP_001319493.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: dsy:DSY0565 hypothetical protein
YP_001319494.1	KEGG: cac:CAC0871 hypothetical protein
YP_001319495.1	KEGG: pca:Pcar_2755 nitroreductase
YP_001319496.1	PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: cth:Cthe_0614 pyruvate ferredoxin/flavodoxin oxidoreductase
YP_001319497.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: swo:Swol_1196 thiamine pyrophosphate enzyme
YP_001319498.1	TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: mla:Mlab_0850 hypothetical protein
YP_001319499.1	TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: mla:Mlab_0849 hypothetical protein
YP_001319500.1	TIGRFAM: CRISPR-associated protein, Csd1 family; KEGG: bcl:ABC3595 hypothetical protein
YP_001319501.1	TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family; PFAM: CRISPR-associated protein TM1801; KEGG: bha:BH0339 hypothetical protein
YP_001319502.1	TIGRFAM: CRISPR-associated protein Cas4; KEGG: bad:BAD_1181 hypothetical protein
YP_001319503.1	TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: bcl:ABC3592 hypothetical protein
YP_001319504.1	TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: bcl:ABC3591 hypothetical protein
YP_001319505.1	PFAM: NADPH-dependent FMN reductase
YP_001319506.1	KEGG: llm:llmg_1429 L-lactate dehydrogenase
YP_001319507.1	PFAM: cytidylyltransferase
YP_001319508.1	PFAM: RDD domain containing protein; KEGG: ctc:CTC01455 hypothetical protein
YP_001319509.1	PFAM: extracellular solute-binding protein, family 3; KEGG: cno:NT01CX_0932 amino acid ABC transporter, substrate-binding protein
YP_001319510.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ssp:SSP0937 truncated ABC-type amino acid transport system periplasmic component
YP_001319511.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0934 ABC transporter
YP_001319512.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cth:Cthe_3120 pyruvate flavodoxin/ferredoxin oxidoreductase-like protein
YP_001319513.1	amylomaltase; acts to release glucose from maltodextrins
YP_001319514.1	TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35; KEGG: cno:NT01CX_0970 glycogen phosphorylase
YP_001319515.1	PFAM: protein of unknown function DUF218; KEGG: pst:PSPTO_4635 hypothetical protein
YP_001319516.1	PFAM: protein of unknown function DUF984; KEGG: cac:CAC1000 uncharacterized protein, homolog of YhfF B.subtilis
YP_001319517.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: oih:OB3092 RNA polymerase ECF-type sigma factor
YP_001319518.1	KEGG: oih:OB3091 hypothetical protein
YP_001319519.1	KEGG: cth:Cthe_3121 hypothetical protein
YP_001319520.1	TIGRFAM: uracil-xanthine permease; PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: cno:NT01CX_0192 uracil-xanthine permease
YP_001319522.1	KEGG: swo:Swol_0148 transposase and inactivated derivatives-like protein
YP_001319523.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lwe:lwe2133 ABC transporter, ATP-binding protein
YP_001319524.1	PFAM: protein of unknown function DUF214; KEGG: bca:BCE_4984 ABC transporter, permease protein
YP_001319525.1	PFAM: conserved hypothetical protein 1655; KEGG: btl:BALH_4471 hypothetical protein
YP_001319526.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: btk:BT9727_0923 probable two-component response regulator; probable MrsR2 protein
YP_001319527.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: cac:CAC0290 sensory transduction histidine kinase
YP_001319529.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tte:TTE0177 uncharacterized Fe-S center protein
YP_001319530.1	PFAM: metallophosphoesterase; KEGG: mma:MM3285 hypothetical protein
YP_001319531.1	PFAM: Domain of unknown function DUF1874; KEGG: bsu:BG12113 hypothetical protein
YP_001319532.1	PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: mta:Moth_1287 beta-lactamase-like
YP_001319533.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bld:BLi01935 putative phosphinothricin N-acetyltransferase; RBL02351
YP_001319534.1	TIGRFAM: TraB family protein; PFAM: TraB determinant protein; KEGG: dsy:DSY1534 hypothetical protein
YP_001319535.1	TIGRFAM: Quinone oxidoreductase putative, YhdH/YhfP; PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: gka:GK1429 hypothetical protein
YP_001319536.1	PFAM: peptidase M16 domain protein; Peptidase M16C associated domain protein; KEGG: cno:NT01CX_1662 Zn-dependent peptidase, insulinase family
YP_001319537.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_001319538.1	KEGG: ctc:CTC00658 hypothetical protein
YP_001319539.1	TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cac:CAC3586 competence-damage inducible protein, CINA
YP_001319540.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cac:CAC0277 HD-GYP hydrolase domain containing protein
YP_001319541.1	PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: btk:BT9727_0531 NAD-dependent epimerase/dehydratase; L-threonine dehydrogenase
YP_001319542.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_001319543.1	PFAM: alanine racemase domain protein; KEGG: fnu:FN0552 serine racemase
YP_001319544.1	PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cno:NT01CX_0777 peptidil-prolyl cis-trans isomerase
YP_001319545.1	TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: cth:Cthe_1007 GTP-binding protein TypA
YP_001319546.1	PFAM: polysaccharide deacetylase; KEGG: cno:NT01CX_0701 polysaccharide deacetylase family protein
YP_001319547.1	TIGRFAM: MutS2 family protein; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein; KEGG: cth:Cthe_1014 MutS2 family protein
YP_001319548.1	PFAM: protein of unknown function DUF523; KEGG: swo:Swol_1164 hypothetical protein
YP_001319549.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_001319550.1	PFAM: extracellular solute-binding protein, family 5; chemotaxis sensory transducer; KEGG: sth:STH128 oligopeptide ABC transporter substrate-binding protein
YP_001319553.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cno:NT01CX_0730 MATE efflux family protein
YP_001319554.1	KEGG: cpr:CPR_2292 hypothetical protein
YP_001319556.1	KEGG: dre:566887 hypothetical LOC566887
YP_001319557.1	PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_3186 radical SAM
YP_001319559.1	PFAM: GCN5-related N-acetyltransferase; KEGG: gka:GK0927 acetyltransferase (GNAT family)
YP_001319560.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cpr:CPR_1840 TPR domain protein
YP_001319561.1	PFAM: phosphate acetyl/butaryl transferase; KEGG: tte:TTE2195 phosphotransacetylase
YP_001319563.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bha:BH0418 unknown conserved protein in others
YP_001319564.1	TIGRFAM: DNA binding domain, excisionase family; KEGG: she:Shewmr4_2780 phage transcriptional regulator, AlpA
YP_001319566.1	KEGG: mmp:MMP0549 hypothetical protein
YP_001319567.1	PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: ctc:CTC01995 2',3'-cyclic-nucleotide 2'-phosphodiesterase
YP_001319568.1	PFAM: ABC transporter related; transport-associated protein OB domain protein; SMART: AAA ATPase; KEGG: tma:TM0421 multiple sugar transport system ATP-binding protein
YP_001319569.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lca:LSEI_0990 ABC-type sugar transport system, permease component
YP_001319570.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lca:LSEI_0989 ABC-type maltose transport system, permease component
YP_001319571.1	PFAM: extracellular solute-binding protein, family 1; KEGG: tma:TM0595 multiple sugar transport system substrate-binding protein
YP_001319572.1	PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: tte:TTE1387 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)
YP_001319577.1	PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: tte:TTE2462 hypothetical protein
YP_001319579.1	PFAM: LexA DNA-binding domain protein; KEGG: efa:EF1579 transcriptional repressor LexA
YP_001319585.1	KEGG: ctc:CTC00917 transposase
YP_001319586.1	KEGG: dsy:DSY0935 hypothetical protein
YP_001319587.1	PFAM: von Willebrand factor, type A; KEGG: sus:Acid_6218 von Willebrand factor, type A
YP_001319588.1	PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; KEGG: swo:Swol_0734 ATP binding protein
YP_001319589.1	PFAM: Integrase, catalytic region; KEGG: pst:PSPTO_2841 ISPsy14, transposase
YP_001319591.1	PFAM: Tellurite resistance protein TehB; thiopurine S-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: btl:BALH_2222 methyltransferase
YP_001319592.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: llm:llmg_1077 putative glyoxalase family protein
YP_001319594.1	KEGG: ctc:pE88_51 hypothetical membrane-spanning protein
YP_001319596.1	PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22)
YP_001319597.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein
YP_001319600.1	PFAM: UMUC domain protein DNA-repair protein; KEGG: dsy:DSY3422 hypothetical protein
YP_001319601.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bat:BAS0256 DNA-binding response regulator
YP_001319602.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; Diverse 7TM receptor, transmembrane region; KEGG: swo:Swol_1622 response regulator receiver protein
YP_001319603.1	PFAM: flagellar protein FlaG protein; KEGG: cth:Cthe_2219 flagellar protein FlaG protein
YP_001319604.1	TIGRFAM: cell wall/surface repeat protein; PFAM: S-layer domain protein; legume lectin, beta domain; KEGG: swo:Swol_0293 hypothetical protein
YP_001319606.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: integral membrane protein
YP_001319608.1	PFAM: IS66 Orf2 family protein; KEGG: swo:Swol_2210 IS66 Orf2 like
YP_001319609.1	KEGG: swo:Swol_2283 hypothetical protein
YP_001319610.1	PFAM: regulatory protein, TetR; KEGG: ana:alr1721 transcriptional regulator
YP_001319611.1	KEGG: xfa:XF2716 ketoreductase
YP_001319612.1	Contains selenocysteine; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mla:Mlab_0618 hypothetical protein
YP_001319613.1	PFAM: metallophosphoesterase; KEGG: mth:MTH1179 hypothetical protein
YP_001319614.1	KEGG: bce:BC4829 ribosomal RNA adenine dimethylase
YP_001319616.1	PFAM: helicase domain protein; DNA primase, small subunit; type III restriction protein, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: dsy:DSY4376 hypothetical protein
YP_001319618.1	KEGG: cth:Cthe_0744 copper amine oxidase-like protein
YP_001319621.1	KEGG: sat:SYN_03210 transposase and inactivated derivatives
YP_001319624.1	KEGG: chy:CHY_0145 hypothetical protein
YP_001319626.1	KEGG: cpe:CPE0258 probable transcriptional regulator
YP_001319627.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: gka:GK0150 DNA-directed RNA polymerase ECF-type sigma factor (sigma-W)
YP_001319628.1	KEGG: dsy:DSY2643 hypothetical protein
YP_001319631.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: ctc:CTC00553 RNA polymerase sigma factor
YP_001319641.1	PFAM: peptidase M23B; KEGG: sao:SAOUHSC_02464 hypothetical protein
YP_001319645.1	KEGG: ctc:CTC00651 hypothetical protein
YP_001319650.1	KEGG: bca:BCE_2809 hypothetical protein
YP_001319656.1	PFAM: regulatory protein, ArsR; KEGG: cth:Cthe_1112 transcriptional regulator, ArsR family
YP_001319657.1	TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: cth:Cthe_1111 bile acid:sodium symporter
YP_001319658.1	PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: llm:llmg_1247 arsenical resistance operon trans-acting repressor ArsD
YP_001319659.1	TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; KEGG: hwa:HQ2609A probable arsenite efflux ATPase
YP_001319660.1	TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; KEGG: hal:VNG7123 arsenite-transporting ATPase
YP_001319662.1	PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: cac:CAC1764 predicted glutamine amidotransferase
YP_001319663.1	PFAM: permease; KEGG: mhu:Mhun_0864 permease
YP_001319666.1	PFAM: regulatory protein, ArsR; KEGG: sfu:Sfum_2884 transcriptional regulator, ArsR family
YP_001319667.1	TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mta:Moth_2214 cysteine desulphurase related, unknown function
YP_001319668.1	PFAM: Fe-S cluster domain protein; KEGG: mta:Moth_2213 putative Fe-S cluster
YP_001319669.1	PFAM: permease; KEGG: mhu:Mhun_0862 permease
YP_001319670.1	PFAM: regulatory protein, ArsR; KEGG: dsy:DSY4679 hypothetical protein
YP_001319674.1	KEGG: dsy:DSY0341 hypothetical protein
YP_001319675.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY0342 hypothetical protein
YP_001319676.1	KEGG: dsy:DSY0343 hypothetical protein
YP_001319679.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sth:STH2043 RNA polymerase ECF-type sigma factor
YP_001319683.1	PFAM: KWG Leptospira repeat protein; KEGG: ter:Tery_2057 KWG Leptospira
YP_001319689.1	PFAM: beta-lactamase domain protein; KEGG: afu:AF1748 hypothetical protein
YP_001319690.1	PFAM: nitroreductase; KEGG: cac:CAC1418 nitroreductase family protein
YP_001319694.1	PFAM: Excinuclease ABC, C subunit domain protein; KEGG: cph:Cpha266_2317 excinuclease ABC, C subunit domain protein
YP_001319698.1	PFAM: regulatory protein, MarR; regulatory protein, ArsR; KEGG: bld:BLi00380 hypothetical protein
YP_001319699.1	KEGG: bld:BLi00381 hypothetical protein
YP_001319700.1	PFAM: helix-turn-helix protein RpiR; KEGG: tte:TTE1343 transcriptional regulator
YP_001319701.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN0397 dipeptide transport system permease protein dppB
YP_001319702.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN0398 dipeptide transport system permease protein dppC
YP_001319703.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: sth:STH2824 oligopeptide ABC transporter ATP-binding protein
YP_001319704.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: fnu:FN0400 dipeptide transport ATP-binding protein dppF
YP_001319705.1	PFAM: extracellular solute-binding protein, family 5; KEGG: oih:OB3071 oligopeptide ABC transporter oligopeptide-binding protein
YP_001319706.1	PFAM: peptidase M19, renal dipeptidase; KEGG: tte:TTE2129 Zn-dependent dipeptidase, microsomal dipeptidase homolog
YP_001319707.1	PFAM: amidohydrolase; KEGG: vvy:VVA1170 D-glutamate deacylase
YP_001319708.1	PFAM: peptidase S58, DmpA; KEGG: tte:TTE1085 L-aminopeptidase/D-esterase
YP_001319709.1	PFAM: Bile acid:sodium symporter; KEGG: btk:BT9727_1749 arsenical-resistance protein; possible sodium/bile acid symporter family
YP_001319710.1	PFAM: cell wall hydrolase/autolysin; copper amine oxidase domain protein; KEGG: cth:Cthe_0185 cell wall hydrolase/autolysin
YP_001319711.1	PFAM: peptidase S41; KEGG: tte:TTE0406 hypothetical protein
YP_001319712.1	PFAM: transposase, IS4 family protein; KEGG: wol:WD0563 transposase, IS4 family
YP_001319715.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: ctc:CTC01433 putative RNA polymerase sigma factor
YP_001319718.1	KEGG: btl:BALH_1554 hypothetical protein
YP_001319719.1	KEGG: dsy:DSY4235 hypothetical protein
YP_001319720.1	KEGG: mxa:MXAN_1647 hypothetical protein
YP_001319721.1	PFAM: manganese and iron superoxide dismutase; KEGG: gka:GK2457 manganese superoxide dismutase
YP_001319722.1	PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: dsy:DSY3593 hypothetical protein
YP_001319723.1	KEGG: dsy:DSY3593 hypothetical protein
YP_001319724.1	PFAM: helix-turn-helix domain protein; KEGG: dsy:DSY3594 hypothetical protein
YP_001319725.1	KEGG: cth:Cthe_1678 hypothetical protein
YP_001319726.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spa:M6_Spy1165 macrolide-specific ABC-type efflux carrier
YP_001319727.1	PFAM: major facilitator superfamily MFS_1; KEGG: pab:PAB0724 multidrug resistance protein (multidrug-EF flux transporter)
YP_001319728.1	PFAM: aminoglycoside phosphotransferase; KEGG: btk:BT9727_1445 possible macrolide 2-phosphotransferase
YP_001319730.1	PFAM: alpha/beta hydrolase fold; Ndr family protein; KEGG: chu:CHU_2307 hydrolase, alpha/beta fold family
YP_001319731.1	PFAM: regulatory protein, TetR; KEGG: sth:STH2336 putative transcriptional regulator
YP_001319733.1	KEGG: ctc:CTC00917 transposase
YP_001319734.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bha:BH0851 transcriptional regulator (AraC/XylS family)
YP_001319735.1	PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: cac:CAC3467 uncharacterized conserved protein, PhnB family
YP_001319736.1	PFAM: regulatory protein, TetR; KEGG: dsy:DSY4218 hypothetical protein
YP_001319737.1	PFAM: pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising protein, mobile region; KEGG: mva:Mvan_2632 pyruvate, water dikinase
YP_001319738.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dsy:DSY3627 hypothetical protein
YP_001319739.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: dsy:DSY3626 hypothetical protein
YP_001319740.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sak:SAK_0174 DNA-binding response regulator
YP_001319741.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: bca:BCE_2042 sensor histidine kinase
YP_001319742.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mac:MA0853 bacitracin ABC transporter, ATP-binding protein
YP_001319743.1	KEGG: mac:MA0852 bacitracin ABC transporter, permease protein
YP_001319744.1	PFAM: helix-turn-helix domain protein; bacteriophage CI repressor; KEGG: ecv:APECO1_376 putative repressor protein encoded within prophage CP-933O
YP_001319748.1	KEGG: tte:TTE2173 hypothetical protein
YP_001319749.1	KEGG: cjr:CJE0269 bacteriophage DNA transposition protein B, putative
YP_001319753.1	PFAM: SpoVT/AbrB domain protein; KEGG: swo:Swol_0047 transcription regulator AbrB
YP_001319758.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; KEGG: cpr:CPR_1733 RNA polymerase sigma-E factor
YP_001319759.1	KEGG: pol:Bpro_3769 hypothetical protein
YP_001319765.1	PFAM: 3D domain protein; KEGG: bsu:BG13521 similar to cell wall-binding protein
YP_001319766.1	KEGG: ssa:SSA_0424 exopolysaccharide biosynthesis protein, putative; related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like protein
YP_001319767.1	PFAM: cell wall hydrolase/autolysin; KEGG: bld:BLi01974 N-acetylmuramoyl-L-alanine amidase cwlL precursor (Cell wall hydrolase) (Autolysin); RBL04154
YP_001319772.1	KEGG: mfa:Mfla_2702 hypothetical protein
YP_001319773.1	PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; KEGG: tte:TTE0730 Transcription antiterminator
YP_001319774.1	TIGRFAM: phage uncharacterized protein; KEGG: bha:BH3533 hypothetical protein
YP_001319775.1	TIGRFAM: phage-associated protein, HI1409 family; KEGG: efa:EF1456 conserved hypothetical protein TIGR01555
YP_001319776.1	TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family; PFAM: phage putative head morphogenesis protein, SPP1 gp7; KEGG: efa:EF1457 minor head protein
YP_001319777.1	KEGG: lin:lin1728 hypothetical protein
YP_001319778.1	KEGG: efa:EF1462 hypothetical protein
YP_001319779.1	KEGG: lin:lin1726 hypothetical protein
YP_001319781.1	KEGG: lin:lin1724 hypothetical protein
YP_001319782.1	KEGG: lin:lin1723 hypothetical protein
YP_001319785.1	KEGG: efa:EF1469 hypothetical protein
YP_001319786.1	KEGG: lin:lin1719 hypothetical protein
YP_001319789.1	TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: dra:DRA0108 minor tail protein GP26-related protein
YP_001319790.1	KEGG: lin:lin1715 hypothetical protein
YP_001319791.1	KEGG: efa:EF1475 hypothetical protein
YP_001319792.1	KEGG: lin:lin1713 hypothetical protein
YP_001319794.1	KEGG: efa:EF1478 hypothetical protein
YP_001319795.1	KEGG: efa:EF1479 hypothetical protein
YP_001319796.1	KEGG: lin:lin1709 hypothetical protein
YP_001319797.1	KEGG: lin:lin1708 hypothetical protein
YP_001319800.1	PFAM: phage integrase domain protein SAM domain protein; KEGG: dsy:DSY2171 hypothetical protein
YP_001319801.1	PFAM: lipolytic protein, G-D-S-L family; KEGG: dsy:DSY3617 hypothetical protein
YP_001319802.1	PFAM: membrane bound O-acyl transferase, MBOAT family protein; KEGG: dsy:DSY3616 hypothetical protein
YP_001319803.1	KEGG: dsy:DSY3615 hypothetical protein
YP_001319804.1	PFAM: cell wall hydrolase/autolysin; KEGG: cyb:CYB_0360 N-acetylmuramoyl-L-alanine amidase
YP_001319805.1	PFAM: NADPH-dependent FMN reductase; KEGG: noc:Noc_0094 NADPH-dependent FMN reductase
YP_001319806.1	KEGG: bat:BAS2654 hypothetical protein
YP_001319807.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: cno:NT01CX_0005 DNA-binding protein, putative
YP_001319808.1	PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: pca:Pcar_0937 putative formate acetyltransferase
YP_001319809.1	TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: cno:NT01CX_1221 glycerol dehydratase activator
YP_001319810.1	KEGG: cac:CAC2600 predicted membrane protein
YP_001319813.1	KEGG: dsy:DSY1520 hypothetical protein
YP_001319814.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: dsy:DSY3561 hypothetical protein
YP_001319815.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: swo:Swol_2177 response regulator receiver protein
YP_001319816.1	KEGG: dsy:DSY1218 hypothetical protein
YP_001319817.1	PFAM: leucine-rich repeat protein; Spore coat protein CotH; KEGG: oih:OB2511 hypothetical protein
YP_001319818.1	KEGG: cth:Cthe_0240 hypothetical protein
YP_001319819.1	KEGG: cth:Cthe_0730 hypothetical protein
YP_001319820.1	SMART: leucine-rich repeat-containing protein, typical subtype; KEGG: cte:CT1526 Rab family protein
YP_001319821.1	PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV3950 MutT-like protein
YP_001319822.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: bcz:BCZK0942 RNA polymerase sigma-70 factor, ECF family
YP_001319823.1	KEGG: cno:NT01CX_1307 hypothetical protein
YP_001319824.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1308 ABC transporter ATP-binding protein
YP_001319825.1	KEGG: cno:NT01CX_1309 hypothetical protein
YP_001319826.1	KEGG: cno:NT01CX_1305 lipoprotein, putative
YP_001319827.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1521 dipeptide transport system permease protein dppB
YP_001319828.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1112 dipeptide transport system permease protein dppC
YP_001319829.1	PFAM: extracellular solute-binding protein, family 5; KEGG: fnu:FN1111 dipeptide-binding protein
YP_001319830.1	PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: fnu:FN1524 dipeptide transport ATP-binding protein dppD
YP_001319831.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: fnu:FN1525 dipeptide transport ATP-binding protein dppF
YP_001319832.1	PFAM: UbiE/COQ5 methyltransferase; Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: msu:MS0467 SmtA protein
YP_001319833.1	TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mta:Moth_2214 cysteine desulphurase related, unknown function
YP_001319834.1	PFAM: Fe-S cluster domain protein; KEGG: mta:Moth_2213 putative Fe-S cluster
YP_001319835.1	PFAM: regulatory protein, ArsR; KEGG: mta:Moth_2209 transcriptional regulator, ArsR family
YP_001319837.1	TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; KEGG: mba:Mbar_A3525 carbon monoxide dehydrogenase
YP_001319838.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dsy:DSY2631 carbon monoxide dehydrogenase maturation factor
YP_001319839.1	catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate
YP_001319840.1	PFAM: Formiminotransferase-cyclodeaminase; KEGG: chy:CHY_1879 methenyltetrahydrofolate cyclohydrolase
YP_001319841.1	PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: chy:CHY_1878 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
YP_001319842.1	KEGG: gme:Gmet_1161 hypothetical protein
YP_001319843.1	PFAM: methylenetetrahydrofolate reductase; KEGG: mbu:Mbur_1847 methylenetetrahydrofolate reductase
YP_001319844.1	TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: chy:CHY_0713 alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase
YP_001319845.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: chy:CHY_1225 CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
YP_001319846.1	part of a complex that catalyzes the cleavage of acetyl-CoA
YP_001319847.1	part of a complex that catalyzes the cleavage of acetyl-CoA
YP_001319848.1	PFAM: dihydropteroate synthase, DHPS; KEGG: mta:Moth_1197 dihydropteroate synthase, DhpS
YP_001319849.1	in acetogenic organisms, this enzyme complex converts carbon dioxide to acetyl-CoA while in methanogenic organisms this enzyme is used to degrade acetyl-CoA to form methane and carbon dioxide; part of an enzyme complex
YP_001319850.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_001319851.1	PFAM: ferredoxin; KEGG: sfu:Sfum_0999 ferredoxin
YP_001319852.1	KEGG: dsy:DSY2558 hypothetical protein
YP_001319853.1	KEGG: hso:HS_1256 periplasmic zinc transporter/adhesin B precursor
YP_001319854.1	KEGG: cth:Cthe_1015 hypothetical protein
YP_001319855.1	KEGG: sfu:Sfum_0850 hypothetical protein
YP_001319856.1	PFAM: extracellular solute-binding protein, family 5; KEGG: cya:CYA_0149 peptide/opine/nickel ABC transporter (PepT) family, substrate-binding protein
YP_001319857.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mma:MM0004 dipeptide ABC transporter, permease protein
YP_001319858.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mba:Mbar_A1343 dipeptide ABC transporter, permease protein
YP_001319859.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: dsy:DSY3541 hypothetical protein
YP_001319860.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY4092 hypothetical protein
YP_001319861.1	PFAM: regulatory protein, MarR; KEGG: dsy:DSY0928 hypothetical protein
YP_001319862.1	PFAM: NmrA family protein; KEGG: lwe:lwe1807 hypothetical protein
YP_001319863.1	PFAM: Lytic transglycosylase, catalytic; KEGG: mxa:MXAN_4034 transglycosylase SLT domain protein
YP_001319864.1	KEGG: ppd:Ppro_0806 hypothetical protein
YP_001319865.1	PFAM: extracellular solute-binding protein, family 5; KEGG: ssa:SSA_0493 ABC-type dipeptide/nickel transport system, periplasmic component, putative
YP_001319866.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1113 dipeptide transport system permease protein dppB
YP_001319867.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1522 dipeptide transport system permease protein dppC
YP_001319868.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sav:SAV0992 oligopeptide ABC transporter ATP-binding protein homologue
YP_001319869.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pmu:PM1906 oligopeptide transport ATP-binding protein
YP_001319870.1	KEGG: bha:BH2071 hypothetical protein
YP_001319871.1	KEGG: bha:BH2072 hypothetical protein
YP_001319873.1	KEGG: tpe:Tpen_0659 histidyl-tRNA synthetase
YP_001319874.1	PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; KEGG: plu:plu0116 hypothetical protein
YP_001319875.1	KEGG: plu:plu0116 hypothetical protein
YP_001319876.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: fnu:FN1653 Na+ driven multidrug efflux pump
YP_001319878.1	PFAM: Lytic transglycosylase, catalytic; KEGG: mxa:MXAN_4034 transglycosylase SLT domain protein
YP_001319879.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: ctc:CTC01899 hypothetical protein
YP_001319880.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: swo:Swol_0306 hypothetical protein
YP_001319881.1	PFAM: extracellular solute-binding protein, family 5; KEGG: fnu:FN0396 dipeptide-binding protein
YP_001319882.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: btk:BT9727_4233 oligopeptide transport, system permease
YP_001319883.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB3067 oligopeptide ABC transporter permease
YP_001319884.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: sth:STH2824 oligopeptide ABC transporter ATP-binding protein
YP_001319885.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: oih:OB2452 oligopeptide ABC transporter ATP-binding protein
YP_001319886.1	PFAM: NLP/P60 protein; KEGG: cac:CAC0190 beta-lactamase
YP_001319887.1	PFAM: amidohydrolase; D-aminoacylase domain protein; Amidohydrolase 3; KEGG: sus:Acid_4612 D-aminoacylase domain protein
YP_001319888.1	PFAM: peptidase M55, D-aminopeptidase; KEGG: lwe:lwe0139 D-alanyl-aminopeptidase
YP_001319889.1	TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: mgm:Mmc1_2953 multi-sensor hybrid histidine kinase
YP_001319890.1	PFAM: regulatory protein, TetR; KEGG: bcl:ABC3316 transcriptional regulator, TetR family
YP_001319891.1	PFAM: regulatory protein, MarR; KEGG: cpr:CPR_1032 transcriptional regulator, MarR family
YP_001319893.1	PFAM: Extracellular ligand-binding receptor; KEGG: mta:Moth_2502 extracellular ligand-binding receptor
YP_001319894.1	PFAM: inner-membrane translocator; KEGG: chy:CHY_2231 high affinity branched-chain amino acid ABC transporter, permease protein
YP_001319895.1	PFAM: inner-membrane translocator; KEGG: chy:CHY_2230 high affinity branched-chain amino acid ABC transporter, permease protein
YP_001319896.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH824 branched chain amino acid ABC transporter ATP-binding protein
YP_001319897.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chy:CHY_2228 high affinity branched-chain amino acid ABC transporter, ATP-binding protein
YP_001319898.1	PFAM: protein of unknown function UPF0061; KEGG: btl:BALH_3159 hypothetical protein
YP_001319899.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pen:PSEEN0400 amidohydrolase, carbon-nitrogen family
YP_001319901.1	PFAM: helix-turn-helix domain protein; KEGG: btl:BALH_0634 transcriptional regulator
YP_001319903.1	PFAM: regulatory protein, TetR; KEGG: sma:SAV4701 TetR-family transcriptional regulator
YP_001319904.1	catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein
YP_001319905.1	PFAM: Methionine synthase, B12-binding module, cap domain protein; cobalamin B12-binding domain protein; KEGG: dsy:DSY0588 hypothetical protein
YP_001319906.1	KEGG: dsy:DSY2720 hypothetical protein
YP_001319908.1	TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; PFAM: major facilitator superfamily MFS_1; KEGG: ppe:PEPE_0185 Na+/xyloside symporter related transporter
YP_001319909.1	PFAM: nucleoside recognition domain protein; KEGG: bca:BCE_3131 hypothetical protein
YP_001319911.1	catalyzes the transfer of the N5-methyl group from (6S)-methyl tetrahydrofolate to the cobalt center of a corrinoid iron-sulfur protein
YP_001319912.1	PFAM: Methionine synthase, B12-binding module, cap domain protein; cobalamin B12-binding domain protein; KEGG: dsy:DSY0588 hypothetical protein
YP_001319913.1	KEGG: saz:Sama_1401 sugar (glycoside-pentoside-hexuronide) transporter
YP_001319914.1	KEGG: dsy:DSY2720 hypothetical protein
YP_001319916.1	PFAM: Methionine synthase, B12-binding module, cap domain protein; cobalamin B12-binding domain protein; KEGG: dsy:DSY2717 hypothetical protein
YP_001319917.1	PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: dsy:DSY2716 hypothetical protein
YP_001319918.1	PFAM: ferredoxin; KEGG: dsy:DSY2715 hypothetical protein
YP_001319919.1	KEGG: dsy:DSY4699 hypothetical protein
YP_001319920.1	PFAM: Protein of unknown function DUF1638; KEGG: dsy:DSY2718 hypothetical protein
YP_001319923.1	SMART: helix-turn-helix domain protein; KEGG: bfs:BF4143 putative DNA-binding protein
YP_001319927.1	KEGG: cno:NT01CX_2295 transcription regulator, Cro/CI family -related protein
YP_001319929.1	KEGG: oih:OB3323 hypothetical protein
YP_001319931.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein
YP_001319932.1	PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22)
YP_001319934.1	PFAM: helix-turn-helix domain protein
YP_001319936.1	KEGG: saa:SAUSA300_1957 phiPVL ORF046-like protein
YP_001319937.1	SMART: AAA ATPase; KEGG: cac:CAC1933 hypothetical protein
YP_001319938.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: lpp:lpp0588 hypothetical protein
YP_001319939.1	PFAM: Abortive infection protein; KEGG: bat:BAS2703 CAAX amino terminal protease family protein
YP_001319940.1	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sma:SAV6733 serine protease
YP_001319945.1	KEGG: dsy:DSY1730 hypothetical protein
YP_001319946.1	KEGG: bha:BH2705 hypothetical protein
YP_001319947.1	KEGG: mla:Mlab_0185 hypothetical protein
YP_001319948.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY2844 hypothetical protein
YP_001319949.1	PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA3643 GnaT-family acetyltransferase
YP_001319950.1	PFAM: transposase IS116/IS110/IS902 family protein; KEGG: gka:GK3301 transposase
YP_001319951.1	KEGG: gka:GK1812 hypothetical protein
YP_001319952.1	KEGG: gka:GK1811 hypothetical protein
YP_001319954.1	KEGG: chy:CHY_0145 hypothetical protein
YP_001319957.1	PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: dde:Dde_1882 hypothetical protein
YP_001319960.1	KEGG: cac:CAC0339 ADP-ribosylglycohydrolase
YP_001319961.1	KEGG: sru:SRU_0541 hypothetical protein
YP_001319962.1	PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein
YP_001319963.1	KEGG: ppe:PEPE_0534 hypothetical protein
YP_001319964.1	PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: ppe:PEPE_0535 superfamily II DNA/RNA helicase, SNF2 family
YP_001319965.1	KEGG: oih:OB3358 hypothetical protein
YP_001319967.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: oih:OB1269 RNA polymerase ECF-type sigma factor
YP_001319968.1	KEGG: dsy:DSY0708 hypothetical protein
YP_001319969.1	KEGG: chy:CHY_1719 hypothetical protein
YP_001319970.1	KEGG: chy:CHY_1718 MukB N-terminal domain/M protein repeat protein
YP_001319971.1	KEGG: chy:CHY_1717 hypothetical protein
YP_001319973.1	PFAM: MscS Mechanosensitive ion channel; KEGG: bfs:BF0722 putative transmembrane transport protein
YP_001319974.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cpr:CPR_1097 HDIG/HD domain protein
YP_001319975.1	TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: cno:NT01CX_0380 anthranilate synthase component II
YP_001319976.1	TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: cno:NT01CX_0379 anthranilate synthase component I
YP_001319977.1	PFAM: aminotransferase, class IV; KEGG: cno:NT01CX_0378 4-amino-4-deoxychorismate lyase
YP_001319978.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_001319979.1	TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; KEGG: chy:CHY_2383 dihydropteroate synthase
YP_001319980.1	TIGRFAM: dihydroneopterin aldolase; KEGG: cth:Cthe_2582 dihydroneopterin aldolase
YP_001319981.1	TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; KEGG: tte:TTE2369 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
YP_001319982.1	TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: tte:TTE1013 phospho-2-dehydro-3-deoxyheptonate aldolase
YP_001319983.1	PFAM: proteinase inhibitor I4, serpin; KEGG: cth:Cthe_1270 proteinase inhibitor I4, serpin
YP_001319984.1	PFAM: small acid-soluble spore H family protein; KEGG: bld:BLi02904 acid-soluble spore protein H
YP_001319987.1	KEGG: chu:CHU_2254 hypothetical protein
YP_001319988.1	PFAM: band 7 protein; KEGG: chu:CHU_2255 hypothetical protein
YP_001319989.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_001319990.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dar:Daro_2825 PAS:GGDEF
YP_001319991.1	PFAM: AMMECR1 domain protein; Extradiol ring-cleavage dioxygenase, class III protein, subunit B; KEGG: cac:CAC1420 protein with a fusion of two uncharacterized domains, typical for archaea
YP_001319992.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cac:CAC1421 pyruvate-formate lyase-activating enzyme
YP_001319993.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1825 ABC-type multidrug/protein/lipid transport system, ATPase
YP_001319994.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH2016 ABC transporter ATP-binding protein
YP_001319996.1	KEGG: bha:BH2269 hypothetical protein
YP_001319997.1	PFAM: 60 kDa inner membrane insertion protein; KEGG: chy:CHY_0004 sporulation associated-membrane protein
YP_001319998.1	PFAM: protein of unknown function UPF0118; KEGG: bha:BH2921 hypothetical protein
YP_001319999.1	PFAM: RelA/SpoT domain protein; KEGG: bha:BH1885 hypothetical protein
YP_001320000.1	PFAM: Ion transport protein; Ion transport 2 domain protein; KEGG: cvi:CV3562 probable ion transporter
YP_001320001.1	TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: gka:GK1608 penicillin-binding protein, peptidoglycan glycosyltransferase
YP_001320002.1	PFAM: Resolvase, N-terminal domain; KEGG: cno:NT01CX_1717 site-specific recombinases, DNA invertase Pin-like protein
YP_001320004.1	PFAM: helix-turn-helix domain protein; KEGG: cno:NT01CX_1719 helix-turn-helix domain protein
YP_001320005.1	PFAM: Helix-turn-helix, type 11 domain protein; KEGG: btl:BALH_0837 hypothetical protein
YP_001320006.1	KEGG: ctc:CTC00917 transposase
YP_001320007.1	TIGRFAM: CRISPR-associated protein Cas6; PFAM: protein of unknown function DUF57; KEGG: ctc:CTC01142 hypothetical protein
YP_001320008.1	TIGRFAM: CRISPR-associated CXXC_CXXC protein Cst1; KEGG: aae:aq_372 putative protein
YP_001320009.1	TIGRFAM: CRISPR-associated autoregulator DevR family; CRISPR-associated regulatory protein, DevR family; KEGG: aae:aq_374 hypothetical protein
YP_001320010.1	TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: ctc:CTC01145 hypothetical protein
YP_001320011.1	TIGRFAM: CRISPR-associated helicase Cas3; CRISPR-associated HD domain protein; PFAM: metal-dependent phosphohydrolase, HD sub domain; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cpr:CPR_0922 CRISPR-associated helicase Cas3 domain protein
YP_001320012.1	TIGRFAM: CRISPR-associated protein Cas4; PFAM: protein of unknown function DUF83; KEGG: ctc:CTC01147 hypothetical protein
YP_001320013.1	TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: fnu:FN1177 hypothetical protein
YP_001320014.1	TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: fnu:FN1176 hypothetical cytosolic protein
YP_001320015.1	KEGG: btl:BALH_2715 hypothetical protein
YP_001320016.1	PFAM: protein of unknown function DUF45; KEGG: bat:BAS0322 hypothetical protein
YP_001320017.1	KEGG: cac:CAC0978 possible elongation subunit of DNA-dependent DNA polymerase
YP_001320018.1	PFAM: S-layer domain protein; KEGG: cth:Cthe_2809 glycoside hydrolase, family 16
YP_001320019.1	PFAM: UvrD/REP helicase; KEGG: sth:STH611 ATP-dependent DNA helicase
YP_001320020.1	PFAM: Asparaginase/glutaminase; KEGG: cac:CAC1714 L-asparaginase
YP_001320021.1	PFAM: protein of unknown function DUF1121; KEGG: cno:NT01CX_1623 hypothetical protein
YP_001320022.1	PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cpf:CPF_1667 aminotransferase, class V
YP_001320023.1	Required for the synthesis of the thiazole moiety
YP_001320024.1	TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: cac:CAC1992 molybdenum cofactor biosynthesis enzyme, MoaC
YP_001320025.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: mta:Moth_2132 molybdopterin binding domain
YP_001320026.1	PFAM: membrane protein of unknown function; KEGG: pna:Pnap_3918 membrane protein of unknown function
YP_001320027.1	TIGRFAM: pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein; KEGG: btk:BT9727_0425 formate acetyltransferase activating enzyme (pyruvate formate-lyase activating enzyme)
YP_001320028.1	TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: cya:CYA_0477 formate acetyltransferase
YP_001320029.1	TIGRFAM: anti-anti-sigma factor; Anti-sigma F factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cpr:CPR_2022 anti-sigma F factor antagonist
YP_001320030.1	binds to sigma F preventing its association with RNA polymerase during sporulation
YP_001320031.1	TIGRFAM: RNA polymerase sigma-F type; RNA polymerase sigma-70; RNA polymerase sigma-B/F/G type; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: ctc:CTC02246 RNA polymerase sigma-F factor
YP_001320033.1	KEGG: bce:BC4070 stage V sporulation protein AA
YP_001320034.1	KEGG: bce:BC4069 stage V sporulation protein AB
YP_001320036.1	TIGRFAM: Sporulation stage V, protein AC; PFAM: SpoVA protein; KEGG: tte:TTE1319 spore formation protein spoVAC
YP_001320037.1	PFAM: Stage V sporulation AD family protein; KEGG: tte:TTE1320 spore formation protein spoVAD
YP_001320038.1	TIGRFAM: Sporulation stage V, protein AE; PFAM: SpoVA protein; KEGG: cno:NT01CX_1809 stage V sporulation protein AE
YP_001320039.1	KEGG: sth:STH1811 stage V sporulation protein AE
YP_001320040.1	TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: cth:Cthe_1760 penicillin-binding protein, 1A family
YP_001320041.1	TIGRFAM: Sporulation protein YunB; KEGG: tte:TTE1683 hypothetical protein
YP_001320042.1	PFAM: GTP-binding protein, HSR1-related; KEGG: cac:CAC2299 predicted GTPase, HflX
YP_001320043.1	PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: cno:NT01CX_1817 hypothetical protein
YP_001320044.1	KEGG: cac:CAC0449 hypothetical protein
YP_001320045.1	PFAM: NUDIX hydrolase; KEGG: tte:TTE1129 NTP pyrophosphohydrolase including oxidative damage repair enzyme
YP_001320046.1	PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: tte:TTE1130 hypothetical protein
YP_001320047.1	PFAM: CoA-binding domain protein; KEGG: tte:TTE1131 predicted CoA-binding protein
YP_001320048.1	KEGG: cth:Cthe_1214 hypothetical protein
YP_001320049.1	KEGG: cth:Cthe_1215 permease
YP_001320050.1	TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: bld:BLi00089 cysteine synthetase A; RBL03196
YP_001320051.1	TIGRFAM: NAD+ synthetase; PFAM: NAD+ synthase; KEGG: gka:GK2596 NH(3)-dependent NAD+ synthetase
YP_001320052.1	PFAM: protein of unknown function DUF28; KEGG: cno:NT01CX_1819 hypothetical protein
YP_001320054.1	PFAM: phage integrase family protein; KEGG: gfo:orf943 phage integrase family protein
YP_001320055.1	KEGG: maq:Maqu_3292 hypothetical protein
YP_001320057.1	KEGG: bca:BCE_0425 aminoglycoside nucleotidyltransferase, putative
YP_001320058.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC2487 predicted acetyltransferase
YP_001320059.1	KEGG: cth:Cthe_3135 hypothetical protein
YP_001320061.1	PFAM: GCN5-related N-acetyltransferase; KEGG: oih:OB0309 6'-N-acetyltransferase
YP_001320067.1	KEGG: cth:Cthe_3229 transposase, IS4
YP_001320069.1	PFAM: GCN5-related N-acetyltransferase; KEGG: tde:TDE1101 acetyltransferase, GNAT family
YP_001320070.1	KEGG: tte:TTE2242 transposase
YP_001320074.1	PFAM: helix-turn-helix domain protein; KEGG: swo:Swol_2033 hypothetical protein
YP_001320075.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bcl:ABC1140 acetyltransferase, GNAT family
YP_001320078.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bsu:BG14084 similar to hypothetical proteins from B. subtilis
YP_001320079.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mmp:MMP0541 phosphoserine phosphatase
YP_001320080.1	KEGG: son:SO4644.1 hypothetical protein
YP_001320083.1	KEGG: shm:Shewmr7_3104 hypothetical protein
YP_001320084.1	KEGG: mgm:Mmc1_1825 hypothetical protein
YP_001320085.1	KEGG: fra:Francci3_4013 transposase, IS4
YP_001320086.1	PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: cac:CAC2475 possible 5-Nitroimidazole antibiotics resistance protein, NimA-family
YP_001320087.1	KEGG: rfe:RF_0424 excinuclease ABC, C subunit, N-terminal
YP_001320090.1	PFAM: Sporulation domain protein
YP_001320091.1	KEGG: tte:TTE0885 hypothetical protein
YP_001320092.1	PFAM: ATP-binding region, ATPase domain protein; KEGG: tte:TTE0886 anti-sigma regulatory factor (Ser/Thr protein kinase)
YP_001320093.1	KEGG: cth:Cthe_0336 DRTGG domain containing protein
YP_001320094.1	PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cth:Cthe_0337 PHP-like protein
YP_001320095.1	PFAM: ATP-binding region, ATPase domain protein; KEGG: cth:Cthe_0339 histidine kinase
YP_001320096.1	TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: cno:NT01CX_1579 RnfC/NqrF
YP_001320097.1	TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: ctc:CTC01020 RnfD/NqrB
YP_001320098.1	TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: ctc:CTC01021 rnfG/nqrC
YP_001320099.1	TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: cpe:CPE1063 probable Na-translocating NADH-quinone reductase
YP_001320100.1	TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: mgm:Mmc1_0690 electron transport complex, RnfABCDGE type, A subunit
YP_001320101.1	TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: ctc:CTC01024 rnfB/polyferredoxin
YP_001320102.1	PFAM: Heptaprenyl diphosphate synthase component I; KEGG: tte:TTE2484 hypothetical protein
YP_001320103.1	KEGG: tte:TTE0895 hypothetical protein
YP_001320104.1	TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: cth:Cthe_0087 maf protein
YP_001320105.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_001320106.1	functions in MreBCD complex in some organisms
YP_001320107.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_001320108.1	KEGG: tte:TTE0900 hypothetical protein
YP_001320109.1	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: tte:TTE0901 cell division protein FtsI/penicillin-binding protein 2
YP_001320110.1	TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: tte:TTE0902 septum formation inhibitor
YP_001320111.1	TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: cth:Cthe_0093 septum site-determining protein MinD
YP_001320112.1	works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell
YP_001320113.1	TIGRFAM: methylglyoxal synthase; PFAM: MGS domain protein; KEGG: oih:OB1767 methylglyoxal synthase
YP_001320114.1	PFAM: peptidase M23B; KEGG: cth:Cthe_0097 peptidase M23B
YP_001320115.1	PFAM: peptidase M50; KEGG: tte:TTE0908 Zn-dependent protease
YP_001320116.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_0156 radical SAM
YP_001320117.1	KEGG: dsy:DSY3168 hypothetical protein
YP_001320118.1	TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: cth:Cthe_0158 ribonuclease, Rne/Rng family
YP_001320119.1	PFAM: ribosomal protein L21; KEGG: cpr:CPR_2097 ribosomal protein L21
YP_001320120.1	PFAM: protein of unknown function DUF464; KEGG: tte:TTE0914 predicted ribosomal protein
YP_001320121.1	involved in the peptidyltransferase reaction during translation
YP_001320122.1	KEGG: ctc:CTC02057 hypothetical protein
YP_001320123.1	TIGRFAM: small GTP-binding protein; GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein, HSR1-related; GTP1/OBG sub domain protein; GTP1/OBG-like; KEGG: cth:Cthe_0163 GTP1/OBG subdomain containing protein
YP_001320124.1	PFAM: protein of unknown function UPF0044; KEGG: cth:Cthe_0164 protein of unknown function UPF0044
YP_001320125.1	TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; KEGG: tte:TTE0918 nicotinate-nucleotide adenylyltransferase
YP_001320126.1	PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cpe:CPE2124 hypothetical protein
YP_001320127.1	TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tte:TTE0920 transcriptional regulator
YP_001320128.1	TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: mbu:Mbur_0831 K+-dependent Na+/Ca+ exchanger related-protein
YP_001320129.1	TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: cth:Cthe_1238 iojap-like protein
YP_001320130.1	TIGRFAM: leucyl-tRNA synthetase; KEGG: cth:Cthe_1237 leucyl-tRNA synthetase
YP_001320131.1	PFAM: YheO domain protein; KEGG: tte:TTE0922 hypothetical protein
YP_001320132.1	TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: fnu:FN1973 translation initiation inhibitor
YP_001320133.1	TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: amino acid-binding ACT domain protein; serine dehydratase beta chain; KEGG: cpf:CPF_2959 L-serine dehydratase, iron-sulfur-dependent, beta subunit
YP_001320134.1	TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: serine dehydratase alpha chain; KEGG: ctc:CTC01982 L-serine dehydratase alpha subunit
YP_001320135.1	PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: tte:TTE0925 D-alanyl-D-alanine carboxypeptidase
YP_001320136.1	TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding, class 1; KEGG: chy:CHY_0402 competence protein
YP_001320137.1	TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cpf:CPF_2374 selenide, water dikinase
YP_001320138.1	TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: hha:Hhal_0607 amino acid carrier protein
YP_001320139.1	catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis
YP_001320140.1	TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; Elongation factor SelB, winged helix 2; Elongation factor SelB, winged helix 3; KEGG: tte:TTE1871 Selenocysteine-specific translation elongation factor
YP_001320141.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sth:STH2007 two-component response regulator
YP_001320142.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE0482 sensory transduction histidine kinase
YP_001320143.1	KEGG: cth:Cthe_2543 spore germination protein-like protein
YP_001320144.1	PFAM: alpha/beta hydrolase fold; KEGG: pna:Pnap_3165 alpha/beta hydrolase fold
YP_001320145.1	TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; KEGG: btl:BALH_0426 tRNA pseudouridine synthase A
YP_001320146.1	PFAM: ferric-uptake regulator; KEGG: bha:BH1396 transcriptional regulator (Fur family)
YP_001320147.1	PFAM: protein of unknown function DUF378; KEGG: cth:Cthe_2074 protein of unknown function DUF378
YP_001320149.1	KEGG: tte:TTE1137 hypothetical protein
YP_001320150.1	endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity
YP_001320151.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_001320152.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_001320153.1	TIGRFAM: SpoIID/LytB domain protein; PFAM: Sporulation domain protein; Stage II sporulation D domain protein; KEGG: cth:Cthe_0960 SpoIID/LytB domain protein containing protein
YP_001320154.1	TIGRFAM: S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: ctc:CTC02210 S-adenosylmethionine:tRNA ribosyltransferase-isomerase
YP_001320155.1	TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; KEGG: cth:Cthe_0958 queuine tRNA-ribosyltransferase
YP_001320156.1	TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: tte:TTE1184 Preprotein translocase subunit YajC
YP_001320157.1	KEGG: ctc:CTC02207 hypothetical protein
YP_001320158.1	KEGG: cth:Cthe_0907 hypothetical protein
YP_001320159.1	PFAM: Radical SAM domain protein; KEGG: cth:Cthe_0906 radical SAM
YP_001320160.1	KEGG: cac:CAC1048 carbonic anhydrase/acetyltransferase, isoleucine patch superfamily
YP_001320161.1	TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecD; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: tte:TTE1188 Preprotein translocase subunit SecD
YP_001320162.1	TIGRFAM: protein-export membrane protein, SecD/SecF family; protein-export membrane protein SecF; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: ctc:CTC02203 protein translocase subunit secF
YP_001320163.1	PFAM: ABC-1 domain protein; KEGG: tte:TTE1190 predicted unusual protein kinase
YP_001320164.1	TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: cth:Cthe_1346 single-stranded-DNA-specific exonuclease RecJ
YP_001320165.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_001320166.1	KEGG: tte:TTE1195 Guanosine polyphosphate pyrophosphohydrolases/synthetases; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region
YP_001320167.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_001320168.1	PFAM: beta-lactamase domain protein; KEGG: mta:Moth_1678 beta-lactamase-like
YP_001320170.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_001320171.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_001320172.1	TIGRFAM: aspartyl-tRNA synthetase; PFAM: GAD domain protein; tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: cth:Cthe_1331 aspartyl-tRNA synthetase
YP_001320173.1	KEGG: bha:BH0515 hypothetical protein
YP_001320174.1	PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: cth:Cthe_3110 UBA/ThiF-type NAD/FAD binding fold
YP_001320175.1	PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: cno:NT01CX_0096 positive regulator of sigma(E), RseC/MucC superfamily
YP_001320176.1	KEGG: ctc:CTC01017 membrane spanning protein
YP_001320177.1	PFAM: protein of unknown function DUF1212; KEGG: cac:CAC2265 hypothetical protein
YP_001320178.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_001320179.1	TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: bld:BLi00421 RocR
YP_001320180.1	PFAM: dihydrodipicolinate reductase; KEGG: tte:TTE1234 hypothetical protein
YP_001320181.1	KEGG: tte:TTE1235 hypothetical protein
YP_001320182.1	PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: tte:TTE1236 threonine synthase
YP_001320183.1	KEGG: tte:TTE1237 hypothetical protein
YP_001320184.1	PFAM: cobalamin B12-binding domain protein; D-Lysine 5,6-aminomutase alpha subunit; KEGG: tte:TTE1238 methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding)
YP_001320185.1	KEGG: tte:TTE1239 methylaspartate mutase
YP_001320186.1	PFAM: alanine racemase domain protein; KEGG: ppr:PBPRB0280 hypothetical protein
YP_001320188.1	KEGG: gga:396469 myosin, heavy chain 9, non-muscle
YP_001320189.1	KEGG: tte:TTE1676 hypothetical protein
YP_001320190.1	PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: cac:CAC1956 site-specific recombinases, DNA invertase Pin homolog
YP_001320192.1	KEGG: spu:578289 hypothetical LOC578289
YP_001320194.1	KEGG: smu:SMU.58 hypothetical protein
YP_001320195.1	PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: cno:NT01CX_2156 ATPase AAA-like protein
YP_001320196.1	KEGG: cno:NT01CX_2155 hypothetical protein
YP_001320199.1	PFAM: protein of unknown function DUF955
YP_001320202.1	PFAM: helix-turn-helix domain protein
YP_001320210.1	KEGG: bcl:ABC2854 phage replication protein
YP_001320211.1	KEGG: ajs:Ajs_0930 hypothetical protein
YP_001320217.1	PFAM: small acid-soluble spore protein, alpha/beta type
YP_001320218.1	KEGG: cac:CAC0550 possible sigma factor
YP_001320219.1	PFAM: Peptidoglycan-binding domain 1 protein; KEGG: dsy:DSY1553 hypothetical protein
YP_001320220.1	PFAM: phage integrase family protein; KEGG: bat:BAS3811 prophage LambdaBa02, site-specific recombinase, phage integrase family
YP_001320221.1	KEGG: bld:BLi01463 YqaS
YP_001320222.1	KEGG: bat:BAS0440 prophage LambdaBa04, GP54
YP_001320223.1	KEGG: bat:BAS0442 hypothetical protein
YP_001320224.1	PFAM: phage Terminase; KEGG: bat:BAS0443 prophage LambdaBa04, terminase, large subunit, putative
YP_001320225.1	PFAM: phage portal protein; KEGG: bcz:BCZK3426 phage-related, head portal protein
YP_001320226.1	TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35, phage prohead HK97; KEGG: lla:L55698 prophage pi2 protein 32
YP_001320227.1	KEGG: bcz:BCZK3424 group-specific protein; possible phage major capsid protein
YP_001320229.1	TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: cpr:CPR_C0011 uncharacterized phage protein (possible DNA packaging)
YP_001320230.1	TIGRFAM: phage head-tail adaptor, putative
YP_001320231.1	KEGG: ctc:CTC02127 hypothetical protein
YP_001320233.1	KEGG: ctc:CTC02125 phage-like element pbsx protein XkdK
YP_001320234.1	KEGG: ctc:CTC02124 phage-like element pbsx protein XkdM
YP_001320237.1	KEGG: sha:SH1757 hypothetical protein
YP_001320238.1	KEGG: cpf:CPF_0965 hypothetical protein
YP_001320239.1	KEGG: dsy:DSY3953 hypothetical protein
YP_001320240.1	KEGG: ctc:CTC02117 phage-like element pbsx protein XkdQ
YP_001320242.1	KEGG: ctc:CTC02116 phage-like element pbsx protein XkdS
YP_001320243.1	PFAM: Baseplate J family protein; KEGG: ctc:CTC02115 phage-like element pbsx protein XkdT
YP_001320244.1	KEGG: ctc:CTC02112 phage-like element pbsx protein XkdT
YP_001320250.1	TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin, toxin secretion/phage lysis; KEGG: bat:BAS3785 prophage LambdaBa02, holin, putative
YP_001320251.1	PFAM: cell wall hydrolase/autolysin; KEGG: bcl:ABC2815 N-acetylmuramoyl-L-alanine amidase
YP_001320253.1	TIGRFAM: DNA adenine methylase; PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: cpr:CPR_C0051 modification methylase dpniia, putative
YP_001320254.1	KEGG: bce:BC1265 hypothetical cytosolic protein
YP_001320256.1	KEGG: ctc:CTC01365 membrane spanning protein
YP_001320258.1	PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tte:TTE0267 Threonine aldolase
YP_001320259.1	PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: ctc:CTC01048 ATPase associated with chromosome architecture/replication
YP_001320261.1	KEGG: tte:TTE1676 hypothetical protein
YP_001320262.1	KEGG: dsy:DSY4494 hypothetical protein
YP_001320263.1	PFAM: SCP-like extracellular protein; KEGG: bcl:ABC2540 hypothetical protein
YP_001320264.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: afu:AF0323a dTDP-4-dehydrorhamnose reductas
YP_001320265.1	TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: tte:TTE1242 predicted transcriptional regulator
YP_001320266.1	PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cpr:CPR_1755 cysteine desulfurase
YP_001320267.1	PFAM: nitrogen-fixing NifU domain protein; KEGG: cth:Cthe_0721 nitrogen-fixing NifU-like protein
YP_001320268.1	KEGG: cth:Cthe_3197 PRC-barrel domain protein
YP_001320270.1	PFAM: protein of unknown function UPF0118; KEGG: cth:Cthe_3199 protein of unknown function UPF0118
YP_001320271.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001320272.1	PFAM: protein of unknown function DUF965; KEGG: chy:CHY_0540 hypothetical protein
YP_001320273.1	KEGG: tte:TTE0101 hypothetical protein
YP_001320274.1	PFAM: aldo/keto reductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cth:Cthe_0152 aldo/keto reductase
YP_001320275.1	PFAM: Holliday junction resolvase YqgF; SMART: Resolvase, RNase H domain protein fold; KEGG: ctc:CTC01056 putative Holliday junction resolvase
YP_001320276.1	PFAM: protein of unknown function DUF1292; KEGG: cno:NT01CX_2277 hypothetical protein
YP_001320278.1	PFAM: sugar fermentation stimulation protein; KEGG: ctc:CTC00070 sugar fermentation stimulation protein
YP_001320279.1	PFAM: ferric-uptake regulator; KEGG: cpf:CPF_2029 transcriptional regulator, Fur family
YP_001320280.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: tte:TTE1253 predicted hydrolase of the metallo-beta-lactamase superfamily
YP_001320281.1	KEGG: dsy:DSY3973 hypothetical protein
YP_001320282.1	PFAM: protein of unknown function DUF340, membrane; KEGG: fnu:FN1083 putative surface protein
YP_001320283.1	PFAM: O-methyltransferase, family 3; Methyltransferase type 11; KEGG: cth:Cthe_1009 O-methyltransferase, family 3
YP_001320284.1	PFAM: peptidase U32; KEGG: cth:Cthe_1010 peptidase U32
YP_001320285.1	TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; KEGG: cno:NT01CX_2269 uridine kinase
YP_001320286.1	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: cth:Cthe_1011 peptidoglycan glycosyltransferase
YP_001320287.1	PFAM: sigma-70 region 2 domain protein; KEGG: cth:Cthe_1012 RNA polymerase, sigma 28 subunit
YP_001320288.1	PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: cac:CAC1956 site-specific recombinases, DNA invertase Pin homolog
YP_001320291.1	KEGG: dsy:DSY3278 hypothetical protein
YP_001320292.1	PFAM: sigma-70 region 4 domain protein; KEGG: cth:Cthe_1012 RNA polymerase, sigma 28 subunit
YP_001320293.1	KEGG: tte:TTE0491 flagellar protein
YP_001320294.1	TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; KEGG: tte:TTE1260 predicted hydrolase of the HAD superfamily
YP_001320295.1	KEGG: noc:Noc_2892 general secretion pathway protein H
YP_001320299.1	KEGG: tte:TTE1271 hypothetical protein
YP_001320301.1	PFAM: creatinase; peptidase M24; KEGG: tte:TTE1280 Xaa-Pro aminopeptidase
YP_001320302.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_001320303.1	KEGG: tte:TTE1282 hypothetical protein
YP_001320304.1	TIGRFAM: Sporulation stage III, protein AA; SMART: AAA ATPase; KEGG: cth:Cthe_0845 stage III sporulation protein spoIIIAA
YP_001320305.1	TIGRFAM: Sporulation stage III, protein AB; KEGG: cth:Cthe_0844 stage III sporulation protein spoIIIAB
YP_001320306.1	PFAM: Stage III sporulation AC family protein; KEGG: tte:TTE1285 hypothetical protein
YP_001320307.1	TIGRFAM: Sporulation stage III, protein AD; KEGG: cth:Cthe_0842 stage III sporulation protein AD
YP_001320308.1	TIGRFAM: Sporulation stage III, protein AE; KEGG: bha:BH2793 mutants block sporulation after engulfment
YP_001320309.1	TIGRFAM: Sporulation stage III, protein AF; KEGG: ctc:CTC01585 stage III sporulation protein AF
YP_001320310.1	TIGRFAM: Sporulation stage III, protein AG; KEGG: tte:TTE1289 stage III sporulation protein AG
YP_001320311.1	KEGG: tte:TTE1290 stage III sporulation protein AH
YP_001320312.1	PFAM: protein of unknown function DUF322; KEGG: cth:Cthe_0837 protein of unknown function DUF322
YP_001320313.1	TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: cth:Cthe_0834 NusB antitermination factor
YP_001320314.1	PFAM: peptidase M22, glycoprotease; KEGG: sth:STH1848 O-sialoglycoprotein endopeptidase
YP_001320315.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_001320316.1	TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; KEGG: aba:Acid345_3427 exodeoxyribonuclease VII, small subunit
YP_001320317.1	PFAM: Polyprenyl synthetase; KEGG: cth:Cthe_0831 polyprenyl synthetase
YP_001320318.1	PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: cth:Cthe_0830 acid phosphatase/vanadium-dependent haloperoxidase related
YP_001320319.1	KEGG: cth:Cthe_0829 hypothetical protein
YP_001320320.1	TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase, central region; Transketolase domain protein; KEGG: tte:TTE1298 deoxyxylulose-5-phosphate synthase
YP_001320321.1	TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: cth:Cthe_0827 hemolysin A
YP_001320322.1	regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes
YP_001320323.1	TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: cth:Cthe_0814 DNA repair protein RecN
YP_001320324.1	TIGRFAM: Peptidase S55, sporulation stage IV, protein B; PFAM: peptidase S55, SpoIVB; KEGG: tte:TTE1303 sporulation protein IVB
YP_001320325.1	TIGRFAM: Sporulation response regulator, Spo0A; PFAM: response regulator receiver; Sporulation initiation factor Spo0A-like; KEGG: ctc:CTC01569 stage 0 sporulation protein A
YP_001320326.1	PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: cth:Cthe_0507 exonuclease, RNase T and DNA polymerase III
YP_001320327.1	PFAM: regulatory protein RecX; KEGG: bld:BLi00877 similar to proteins; RBL02217
YP_001320328.1	PFAM: Thiamin pyrophosphokinase, catalytic region; KEGG: tte:TTE1305 hypothetical protein
YP_001320329.1	KEGG: tte:TTE1306 hypothetical protein
YP_001320330.1	PFAM: glycosyl transferase, family 2; KEGG: tte:TTE1307 glycosyltransferase involved in cell wall biogenesis
YP_001320331.1	KEGG: tte:TTE1308 hypothetical protein
YP_001320332.1	KEGG: swo:Swol_0596 hypothetical protein
YP_001320333.1	PFAM: NUDIX hydrolase; KEGG: tte:TTE1310 NTP pyrophosphohydrolases including oxidative damage repair enzymes
YP_001320334.1	TIGRFAM: Sporulation stage II, protein M; PFAM: protein of unknown function DUF95, transmembrane; KEGG: tte:TTE1312 hypothetical protein
YP_001320335.1	TIGRFAM: tyrosine recombinase XerD; PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG: cth:Cthe_0676 tyrosine recombinase XerD
YP_001320336.1	catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose
YP_001320337.1	TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine phosphorylase, family 2; KEGG: oih:OB1845 purine nucleoside phosphorylase
YP_001320338.1	catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation
YP_001320339.1	TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase, family 3; Pyrimidine nucleoside phosphorylase, C-terminal domain; KEGG: cno:NT01CX_1499 pyrimidine-nucleoside phosphorylase
YP_001320340.1	PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: tte:TTE1314 D-alanyl-D-alanine carboxypeptidase
YP_001320341.1	PFAM: CBS domain containing protein; phosphoesterase, RecJ domain protein; Polynucleotide adenylyltransferase region; KEGG: cth:Cthe_0684 polynucleotide adenylyltransferase region
YP_001320342.1	PFAM: peptidase M50; KEGG: tte:TTE1323 Zn-dependent protease
YP_001320343.1	PFAM: chromosome segregation and condensation protein ScpA; KEGG: bce:BC4058 segregation and condensation protein A
YP_001320344.1	TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: ctc:CTC01528 segregation and condensation protein B
YP_001320345.1	TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; KEGG: ctc:CTC02431 pyrroline-5-carboxylate reductase
YP_001320346.1	PFAM: phage integrase family protein; KEGG: dsy:DSY1571 hypothetical protein
YP_001320347.1	Represses a number of genes involved in the response to DNA damage
YP_001320348.1	KEGG: tte:TTE2242 transposase
YP_001320349.1	PFAM: Aluminium resistance family protein; KEGG: cth:Cthe_0794 aluminium resistance protein
YP_001320351.1	PFAM: GTP-binding protein, HSR1-related
YP_001320352.1	PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: tte:TTE1366 ATPases of the AAA+ class
YP_001320353.1	TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; KEGG: chy:CHY_1393 hfq protein
YP_001320354.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_001320355.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_001320356.1	This protein performs the mismatch recognition step during the DNA repair process
YP_001320357.1	KEGG: cth:Cthe_0783 RNA modification enzyme, MiaB family; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB
YP_001320360.1	PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; Sporulation domain protein; KEGG: bsu:BG10825 N-acetylmuramoyl-L-alanine amidase, peptidoglycan hydrolase, LytC amidase family
YP_001320361.1	KEGG: cac:CAC1109 hypothetical protein, CF-8 family
YP_001320362.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: shw:Sputw3181_2465 RNA-directed DNA polymerase (reverse transcriptase)
YP_001320363.1	KEGG: shw:Sputw3181_2466 hypothetical protein
YP_001320364.1	KEGG: shw:Sputw3181_2467 hypothetical protein
YP_001320370.1	PFAM: Baseplate J family protein; KEGG: ctc:CTC02115 phage-like element pbsx protein XkdT
YP_001320371.1	KEGG: ctc:CTC02116 phage-like element pbsx protein XkdS
YP_001320374.1	PFAM: Peptidoglycan-binding LysM; KEGG: bsu:BG11550 phage-like element PBSX protein
YP_001320375.1	TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: ctc:CTC01100 phage protein, similar to tail length tape measure protein
YP_001320377.1	PFAM: Phage XkdN-like protein; KEGG: lga:LGAS_0680 phage related protein
YP_001320378.1	KEGG: bsu:BG11547 phage-like element PBSX protein
YP_001320379.1	KEGG: lin:lin1278 hypothetical protein
YP_001320388.1	KEGG: gfo:orf2413 hypothetical protein
YP_001320390.1	KEGG: rru:Rru_A2590 hypothetical protein
YP_001320391.1	KEGG: bld:BLi01463 YqaS
YP_001320393.1	PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; KEGG: cth:Cthe_1729 DNA methylase N-4/N-6
YP_001320394.1	KEGG: cac:CAC0550 possible sigma factor
YP_001320395.1	PFAM: protein of unknown function DUF968; KEGG: lin:lin1740 hypothetical protein
YP_001320396.1	TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cac:CAC3723 single strand DNA binding protein, SSB
YP_001320406.1	KEGG: ptr:744052 hypothetical protein LOC744052
YP_001320407.1	KEGG: ctc:CTC02141 hypothetical protein
YP_001320409.1	PFAM: protein of unknown function DUF1064; KEGG: lin:lin0099 hypothetical protein
YP_001320410.1	KEGG: bce:BC1875 phage protein
YP_001320411.1	KEGG: bce:BC1874 phage protein
YP_001320412.1	PFAM: IstB domain protein ATP-binding protein; KEGG: cac:CAC1933 hypothetical protein
YP_001320413.1	TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: efa:EF1434 DnaD domain protein
YP_001320414.1	KEGG: lin:lin1754 hypothetical protein
YP_001320415.1	TIGRFAM: phage recombination protein Bet; PFAM: RecT protein; KEGG: lin:lin1755 hypothetical protein
YP_001320417.1	KEGG: gfo:orf2459 hypothetical protein
YP_001320423.1	PFAM: helix-turn-helix domain protein; KEGG: tte:TTE2124 helix-turn-helix
YP_001320424.1	PFAM: helix-turn-helix domain protein; KEGG: gka:GK0493 transcriptional regulator
YP_001320425.1	KEGG: gka:GK0550 hypothetical protein
YP_001320427.1	PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: cpf:CPF_2606 site-specific recombinase, resolvase family
YP_001320429.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001320430.1	PFAM: regulatory protein, MerR; KEGG: cth:Cthe_0804 transcriptional regulator, MerR family
YP_001320431.1	PFAM: peptidase M20; peptidase M42 family protein; KEGG: tte:TTE0443 Cellulase M and related proteins
YP_001320432.1	PFAM: peptidase M18, aminopeptidase I; peptidase M42 family protein; KEGG: tte:TTE0442 Cellulase M and related proteins
YP_001320433.1	PFAM: peptidase M20; peptidase M42 family protein; KEGG: tte:TTE0441 Cellulase M and related proteins
YP_001320434.1	PFAM: MCP methyltransferase, CheR-type; KEGG: cth:Cthe_0717 MCP methyltransferase, CheR-type
YP_001320435.1	PFAM: RNA binding S1 domain protein; KEGG: cno:NT01CX_1373 RpsA
YP_001320436.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_001320437.1	TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: tte:TTE1351 1-acyl-sn-glycerol-3-phosphate acyltransferase
YP_001320438.1	TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: lme:LEUM_1293 cytidylate kinase
YP_001320440.1	PFAM: glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tte:TTE1347 predicted flavoproteins
YP_001320441.1	PFAM: Phosphoglycerate mutase; KEGG: tte:TTE1346 Phosphoglycerate mutase/fructose-2,6-bisphosphatase
YP_001320442.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: ctc:CTC01318 transcriptional regulator, RpiR family
YP_001320443.1	TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: tte:TTE1211 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit
YP_001320444.1	catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin
YP_001320445.1	PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tte:TTE1340 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
YP_001320446.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tte:TTE1216 ferredoxin 3
YP_001320447.1	TIGRFAM: stationary-phase survival protein SurE; PFAM: Survival protein SurE; KEGG: chy:CHY_0957 acid phosphatase SurE
YP_001320448.1	KEGG: cth:Cthe_0704 hypothetical protein
YP_001320449.1	Converts oxaloacetate to phosphoenolpyruvate using ATP as an energy source
YP_001320450.1	PFAM: GCN5-related N-acetyltransferase
YP_001320451.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cth:Cthe_0693 pseudouridine synthase, Rsu
YP_001320452.1	PFAM: glucose-inhibited division protein A; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cno:NT01CX_2042 hypothetical protein
YP_001320453.1	KEGG: tte:TTE1329 hypothetical protein
YP_001320454.1	PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: tte:TTE1328 D-alanyl-D-alanine carboxypeptidase
YP_001320455.1	KEGG: gvi:glr4396 unknown protein
YP_001320456.1	TIGRFAM: Sporulation protein YtfJ; KEGG: tte:TTE1327 hypothetical protein
YP_001320457.1	KEGG: bsu:BG13848 hypothetical protein
YP_001320458.1	PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: cpr:CPR_1934 DNA-binding protein
YP_001320459.1	PFAM: S-adenosylmethionine decarboxylase related; KEGG: tma:TM0655 S-adenosylmethionine decarboxylase
YP_001320460.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_001320461.1	TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: cpe:CPE0551 probable agmatinase
YP_001320462.1	PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase
YP_001320463.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_001320464.1	PFAM: aminotransferase, class I and II; KEGG: cth:Cthe_0755 aminotransferase, class I and II
YP_001320465.1	PFAM: transcriptional regulator PadR family protein; KEGG: rxy:Rxyl_2059 transcriptional regulator, PadR-like family
YP_001320466.1	PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: tte:TTE1369 predicted metal-dependent phosphoesterases (PHP family)
YP_001320467.1	PFAM: Stage V sporulation protein S; KEGG: bld:BLi01921 SpoVS
YP_001320468.1	protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP
YP_001320469.1	KEGG: cth:Cthe_1050 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase
YP_001320470.1	TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: tte:TTE1376 Phosphatidylglycerophosphate synthase
YP_001320471.1	KEGG: tte:TTE1377 2-methylthioadenine synthetase; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB
YP_001320472.1	catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
YP_001320473.1	PFAM: cell division protein FtsK/SpoIIIE SMART: AAA ATPase; KEGG: ctc:CTC01286 putative stage III sporulation protein E
YP_001320474.1	PFAM: peptidase S14, ClpP; KEGG: tte:TTE1381 protease subunit of ATP-dependent Clp protease
YP_001320475.1	TIGRFAM: Sporulation protein YlmC/YmxH; PFAM: PRC-barrel domain protein; KEGG: tte:TTE1383 hypothetical protein
YP_001320476.1	PFAM: peptidase M16 domain protein; KEGG: cth:Cthe_0419 peptidase M16-like protein
YP_001320477.1	PFAM: polysaccharide deacetylase; KEGG: tte:TTE1386 predicted xylanase/chitin deacetylase
YP_001320478.1	PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; KEGG: tte:TTE1387 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)
YP_001320479.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_001320480.1	TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: cth:Cthe_0987 riboflavin biosynthesis protein RibF
YP_001320481.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_001320482.1	PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: tte:TTE1391 exopolyphosphatase-related proteins
YP_001320483.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_001320484.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_001320485.1	PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: ser:SERP0835 30S ribosomal protein L7Ae, putative
YP_001320486.1	PFAM: protein of unknown function DUF448; KEGG: cth:Cthe_0993 protein of unknown function DUF448
YP_001320487.1	TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; KH, type 1, domain protein; NusA N-terminal domain protein; SMART: KH domain protein; KEGG: dsy:DSY2520 hypothetical protein
YP_001320488.1	PFAM: protein of unknown function DUF150; KEGG: cth:Cthe_0995 protein of unknown function DUF150
YP_001320489.1	KEGG: cth:Cthe_0996 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, epsilon subunit; DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; Exonuclease, RNase T and DNA polymerase III; SMART: phosphoesterase PHP domain protein; Exonuclease
YP_001320490.1	PFAM: glycosyl transferase, family 2; KEGG: tte:TTE1399 glycosyltransferase involved in cell wall biogenesis
YP_001320491.1	TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; KEGG: tte:TTE1400 Essential bacterial protein, involved in density-dependent regulation of peptidoglycan biosynthesis
YP_001320492.1	TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: tte:TTE1401 predicted membrane-associated Zn-dependent protease 1
YP_001320493.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_001320494.1	PFAM: phosphatidate cytidylyltransferase; KEGG: ctc:CTC01266 phosphatidate cytidylyltransferase
YP_001320495.1	TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: ctc:CTC01265 undecaprenyl pyrophosphate synthetase
YP_001320497.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_001320498.1	Catalyzes the phosphorylation of UMP to UDP
YP_001320499.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_001320500.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_001320504.1	PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 protein of unknown function DUF342
YP_001320505.1	TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma-70; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sco:SCO5621 RNA polymerase sigma factor WhiG
YP_001320506.1	catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors
YP_001320507.1	PFAM: CheC domain protein; KEGG: tte:TTE1415 Chemotaxis protein CheC, inhibitor of MCP methylation
YP_001320508.1	PFAM: CheW domain protein; KEGG: cth:Cthe_0491 CheW protein
YP_001320509.1	PFAM: CheW domain protein; ATP-binding region, ATPase domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: cth:Cthe_0490 CheA signal transduction histidine kinases
YP_001320510.1	PFAM: CheB methylesterase; response regulator receiver; KEGG: cth:Cthe_0489 response regulator receiver modulated CheB methylesterase
YP_001320511.1	PFAM: type IV pilus assembly PilZ; KEGG: cth:Cthe_0488 type IV pilus assembly PilZ
YP_001320512.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: cth:Cthe_0487 cobyrinic acid a,c-diamide synthase
YP_001320513.1	PFAM: GTP-binding signal recognition particle SRP54, G- domain; SMART: AAA ATPase; KEGG: cth:Cthe_0486 GTP-binding signal recognition particle SRP54, G-domain
YP_001320514.1	TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: cth:Cthe_0485 flagellar biosynthesis protein FlhA
YP_001320515.1	TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: cth:Cthe_0484 flagellar biosynthetic protein FlhB
YP_001320516.1	FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus
YP_001320517.1	TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ, family 3; KEGG: cth:Cthe_0482 flagellar biosynthetic protein FliQ
YP_001320518.1	TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; KEGG: gme:Gmet_3097 flagellar transport protein FliP
YP_001320520.1	PFAM: response regulator receiver; KEGG: cth:Cthe_0479 response regulator receiver protein
YP_001320521.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_001320522.1	PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: cth:Cthe_0477 flagellar motor switch protein FliM
YP_001320523.1	PFAM: flagellar basal body-associated protein FliL; KEGG: tte:TTE1431 flagellar basal body-associated protein
YP_001320524.1	PFAM: OmpA/MotB domain protein; KEGG: mta:Moth_0782 OmpA/MotB
YP_001320525.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3589 chemotaxis protein MotA
YP_001320526.1	PFAM: flagellar FlbD family protein; KEGG: cac:CAC2153 flagellar protein flbD
YP_001320527.1	PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: tte:TTE1433 Flagellar basal body and hook proteins
YP_001320528.1	TIGRFAM: flagellar operon protein; KEGG: cth:Cthe_0473 flagellar operon protein
YP_001320529.1	PFAM: flagellar hook capping protein; KEGG: cth:Cthe_0472 flagellar hook capping protein
YP_001320530.1	PFAM: flagellar hook-length control protein; KEGG: cth:Cthe_0471 flagellar hook-length control protein
YP_001320532.1	TIGRFAM: flagellar export protein FliJ; KEGG: cth:Cthe_0469 flagellar export protein FliJ
YP_001320533.1	KEGG: cth:Cthe_0468 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, alpha/beta subunit domain protein; SMART: AAA ATPase
YP_001320534.1	KEGG: tte:TTE1440 flagellar biosynthesis/type III secretory pathway protein
YP_001320535.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_001320536.1	TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; KEGG: tte:TTE1442 flagellar biosynthesis/type III secretory pathway lipoprotein
YP_001320537.1	TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: cth:Cthe_0464 flagellar hook-basal body complex subunit FliE
YP_001320538.1	TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_0463 flagellar basal-body rod protein FlgC
YP_001320539.1	TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: tte:TTE1445 flagellar basal body protein
YP_001320540.1	PFAM: ATP-binding region, ATPase domain protein; SMART: GAF domain protein; KEGG: plt:Plut_2010 putative PAS/PAC sensor protein
YP_001320541.1	KEGG: ctc:CTC00917 transposase
YP_001320542.1	PFAM: response regulator receiver; CheW domain protein; KEGG: bha:BH2262 modulation of CheA activity in response to attractants (chemotaxis protein)
YP_001320543.1	PFAM: response regulator receiver; KEGG: cff:CFF8240_0377 DNA-binding response regulator
YP_001320544.1	CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
YP_001320545.1	KEGG: bha:BH2467 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase, type IA, central domain protein; DNA topoisomerase, type IA, zn finger domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein
YP_001320546.1	TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: tte:TTE1450 predicted Rossmann-fold nucleotide-binding protein involved in DNA uptake
YP_001320547.1	TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: cth:Cthe_0455 Mg chelatase, subunit ChlI
YP_001320548.1	TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: dsy:DSY4027 hypothetical protein
YP_001320549.1	PFAM: protein of unknown function UPF0102; KEGG: cac:CAC1763 predicted endonuclease
YP_001320550.1	PFAM: ribonuclease HII/HIII; KEGG: smu:SMU.994 putative ribonuclease HII
YP_001320551.1	PFAM: GTP-binding protein, HSR1-related; KEGG: cno:NT01CX_2207 GTP-binding protein, putative
YP_001320552.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_001320553.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_001320554.1	Essential for efficient processing of 16S rRNA
YP_001320555.1	KEGG: tte:TTE1460 predicted RNA-binding protein (KH domain)
YP_001320556.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_001320557.1	TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; KEGG: cth:Cthe_0770 signal recognition particle protein
YP_001320558.1	PFAM: putative helix-turn-helix protein, YlxM/p13 family protein; Sigma-70, region 4 type 2; KEGG: bat:BAS3697 hypothetical protein
YP_001320559.1	TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; KEGG: cth:Cthe_0926 signal recognition particle-docking protein FtsY
YP_001320560.1	TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: cth:Cthe_0927 chromosome segregation protein SMC
YP_001320561.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tte:TTE1468 ELP3 component of the RNA polymerase II complex, consists of an N-terminal BioB/LipA-like domain and a C-terminal histone acetyltransferase domain (only BioB/LipA-like domain in Thermotoga)
YP_001320562.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_001320563.1	PFAM: Beta-ketoacyl synthase-like; KEGG: tte:TTE1470 3-oxoacyl-(acyl-carrier-protein) synthase
YP_001320564.1	TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: cac:CAC1747 acyl carrier protein, ACP
YP_001320565.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: cno:NT01CX_0925 3-oxoacyl-(acyl-carrier-protein) reductase
YP_001320566.1	TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: cth:Cthe_0935 malonyl CoA-acyl carrier protein transacylase
YP_001320567.1	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: tte:TTE1474 dioxygenases related to 2-nitropropane dioxygenase
YP_001320568.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_001320569.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_001320570.1	negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria
YP_001320571.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_001320572.1	PFAM: protein of unknown function DUF177; KEGG: ctc:CTC01241 hypothetical protein
YP_001320573.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_001320574.1	PFAM: protein of unknown function DUF795; KEGG: cth:Cthe_1301 protein of unknown function DUF795
YP_001320575.1	TIGRFAM: Sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein; KEGG: cth:Cthe_1274 nucleoside recognition
YP_001320576.1	KEGG: tte:TTE1485 archaeal/vacuolar-type H+-ATPase subunit H
YP_001320577.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_001320578.1	TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: cth:Cthe_1277 putative methyltransferase
YP_001320579.1	PFAM: small acid-soluble spore protein, alpha/beta type; KEGG: sth:STH1431 small acid-soluble spore protein
YP_001320580.1	catalyzes branch migration in Holliday junction intermediates
YP_001320581.1	PFAM: Dak phosphatase; KEGG: cpr:CPR_1703 DAK2 domain protein
YP_001320582.1	PFAM: protein of unknown function DUF322; KEGG: cno:NT01CX_2234 alkaline shock protein, putative
YP_001320583.1	required for 70S ribosome assembly
YP_001320584.1	PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase
YP_001320585.1	TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic region; KEGG: tte:TTE1497 thiamine pyrophosphokinase
YP_001320586.1	PFAM: ribulose-phosphate 3-epimerase; KEGG: cth:Cthe_0576 ribulose-phosphate 3-epimerase
YP_001320587.1	TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: tte:TTE1499 predicted GTPases
YP_001320588.1	PFAM: protein of unknown function RIO1; protein kinase; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; KEGG: cth:Cthe_0574 serine/threonine protein kinase
YP_001320589.1	PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: cth:Cthe_0573 protein serine/threonine phosphatases
YP_001320590.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_001320591.1	TIGRFAM: sun protein; putative RNA methylase, NOL1/NOP2/sun family; transcription antitermination factor NusB; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: cth:Cthe_0571 sun protein
YP_001320592.1	PFAM: peptidase, membrane zinc metallopeptidase, putative; KEGG: ctc:CTC01221 hypothetical protein
YP_001320593.1	PFAM: protein of unknown function DUF116; KEGG: mta:Moth_0899 hypothetical protein
YP_001320594.1	TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: ctc:CTC01220 methionyl-tRNA formyltransferase
YP_001320595.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_001320596.1	TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cth:Cthe_0566 primosomal protein N'
YP_001320597.1	TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; KEGG: cth:Cthe_1313 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
YP_001320598.1	Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_001320599.1	Essential for recycling GMP and indirectly, cGMP
YP_001320600.1	PFAM: protein of unknown function DUF370; KEGG: cth:Cthe_1316 protein of unknown function DUF370
YP_001320601.1	PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; KEGG: cth:Cthe_1317 hypothetical protein
YP_001320602.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_001320603.1	PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein
YP_001320604.1	PFAM: phosphoribosyltransferase; KEGG: swo:Swol_1285 uracil phosphoribosyltransferase
YP_001320605.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: tte:TTE1538 Pseudouridylate synthase, 23S RNA-specific
YP_001320606.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_001320607.1	TIGRFAM: Sporulation protein YteA; KEGG: tte:TTE1572 DnaK suppressor protein
YP_001320608.1	PFAM: purine or other phosphorylase, family 1; KEGG: fnu:FN1015 5'-methylthioadenosine nucleosidase
YP_001320609.1	PFAM: DivIVA family protein; KEGG: tte:TTE1596 Cell division initiation protein
YP_001320610.1	PFAM: RNA-binding S4 domain protein; KEGG: tte:TTE1597 hypothetical protein
YP_001320611.1	PFAM: protein of unknown function YGGT; KEGG: mgm:Mmc1_3655 protein of unknown function YGGT
YP_001320612.1	PFAM: protein of unknown function DUF552; KEGG: cth:Cthe_0791 protein of unknown function DUF552
YP_001320613.1	PFAM: alanine racemase domain protein; KEGG: cth:Cthe_0792 protein of unknown function UPF0001
YP_001320614.1	KEGG: tte:TTE1601 membrane-fusion protein
YP_001320617.1	TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB3456 glycine betaine ABC transporter ATP-binding protein
YP_001320618.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ctc:CTC02341 putative glycine-betaine binding permease protein
YP_001320619.1	PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: aeh:Mlg_0734 response regulator receiver protein
YP_001320621.1	PFAM: inner-membrane translocator; KEGG: mta:Moth_2020 inner-membrane translocator
YP_001320622.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_2021 ABC transporter related
YP_001320623.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: mta:Moth_2022 periplasmic binding protein/LacI transcriptional regulator
YP_001320624.1	PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0289 Periplasmic sugar-binding proteins
YP_001320625.1	PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: tte:TTE0288 CheY-like receiver domains
YP_001320626.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase internal region; KEGG: tte:TTE0287 predicted ATPase
YP_001320627.1	KEGG: tte:TTE0286 periplasmic sugar-binding proteins
YP_001320628.1	PFAM: TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ctc:CTC01770 conserved protein, tetratricopeptide repeat family protein
YP_001320629.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sth:STH2737 glycerophosphodiester phosphodiesterase
YP_001320630.1	S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine
YP_001320631.1	PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cno:NT01CX_0220 negative regulator of genetic competence ClpC/MecB
YP_001320632.1	PFAM: protein of unknown function DUF477; KEGG: tma:TM0962 hypothetical protein
YP_001320633.1	PFAM: LemA family protein; KEGG: sat:SYN_00535 LemA family protein
YP_001320634.1	PFAM: Peptidoglycan-binding LysM; KEGG: mta:Moth_1271 peptidoglycan-binding LysM
YP_001320635.1	PFAM: nitroreductase; KEGG: dsy:DSY1470 hypothetical protein
YP_001320637.1	PFAM: major facilitator superfamily MFS_1; KEGG: pac:PPA1089 putative oxalate/formate-specific permease
YP_001320641.1	KEGG: swo:Swol_1305 hypothetical protein
YP_001320644.1	KEGG: cac:CAC0060 predicted membrane protein
YP_001320645.1	PFAM: phage portal protein, SPP1; KEGG: swo:Swol_1309 hypothetical protein
YP_001320646.1	KEGG: swo:Swol_1310 hypothetical protein
YP_001320652.1	KEGG: swo:Swol_1313 hypothetical protein
YP_001320654.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein
YP_001320655.1	PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22)
YP_001320656.1	KEGG: swo:Swol_1313 hypothetical protein
YP_001320658.1	KEGG: spb:M28_Spy1244 major head protein
YP_001320661.1	KEGG: cac:CAC1139 phage related protein, YonO B.subtilis homolog
YP_001320662.1	PFAM: phage integrase family protein; KEGG: gka:GK2913 integrase/recombinase
YP_001320663.1	TIGRFAM: Sporulation stage IV, protein A; KEGG: cth:Cthe_1021 stage IV sporulation protein A
YP_001320664.1	PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: mta:Moth_1320 NAD-dependent glycerol-3-phosphate dehydrogenase-like
YP_001320665.1	PFAM: protein of unknown function DUF205; KEGG: tte:TTE1618 hypothetical protein
YP_001320666.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_001320667.1	PFAM: protein of unknown function DUF512; KEGG: cth:Cthe_1025 protein of unknown function DUF512
YP_001320668.1	KEGG: tte:TTE1621 hypothetical protein
YP_001320670.1	KEGG: swo:Swol_1337 hypothetical protein
YP_001320671.1	KEGG: tte:TTE1624 hypothetical protein
YP_001320672.1	PFAM: Stage II sporulation P family protein; KEGG: tte:TTE1625 stage II sporulation protein P
YP_001320673.1	KEGG: tte:TTE1626 hypothetical protein
YP_001320674.1	KEGG: cth:Cthe_1393 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_001320675.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpf:CPF_0623 DNA-binding response regulator
YP_001320676.1	PFAM: protein of unknown function DUF152; KEGG: tte:TTE0179 conserved hypothetical protein
YP_001320677.1	PFAM: ATP-cone domain protein; KEGG: cth:Cthe_0450 ribonucleotide reductase regulator NrdR-like protein
YP_001320678.1	TIGRFAM: Sporulation protein YlmC/YmxH; PFAM: PRC-barrel domain protein; KEGG: cth:Cthe_0449 hypothetical protein
YP_001320679.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin
YP_001320680.1	sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation
YP_001320681.1	PFAM: peptidase U4, sporulation factor SpoIIGA; KEGG: cth:Cthe_0446 peptidase U4, sporulation factor SpoIIGA
YP_001320682.1	TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ, GTPase; Tubulin/FtsZ domain protein; KEGG: cth:Cthe_0445 cell division protein FtsZ
YP_001320683.1	PFAM: protein of unknown function DUF1290; KEGG: tte:TTE1641 small basic protein
YP_001320684.1	PFAM: protein of unknown function DUF881; KEGG: tte:TTE1642 hypothetical protein
YP_001320685.1	PFAM: protein of unknown function DUF881; KEGG: tte:TTE1642 hypothetical protein
YP_001320686.1	PFAM: Polypeptide-transport-associated protein domain protein, FtsQ-type; KEGG: tte:TTE1643 cell division septal protein
YP_001320687.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_001320688.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_001320689.1	TIGRFAM: cell division protein FtsW; stage V sporulation protein E; PFAM: cell cycle protein; KEGG: tte:TTE1646 Bacterial cell division membrane protein
YP_001320690.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_001320691.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_001320692.1	TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; KEGG: cth:Cthe_0977 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase
YP_001320693.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_001320694.1	PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA domain containing protein; KEGG: tte:TTE1651 Cell division protein FtsI/penicillin-binding protein 2
YP_001320695.1	KEGG: tte:TTE1652 hypothetical protein
YP_001320696.1	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: ctc:CTC01635 S-adenosyl-methyltransferase mraW
YP_001320697.1	MraZ; UPF0040; crystal structure shows similarity to AbrB
YP_001320699.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_001320700.1	PFAM: peptidase M16 domain protein; KEGG: tte:TTE1655 predicted Zn-dependent peptidase
YP_001320701.1	PFAM: peptidase M16 domain protein; KEGG: tte:TTE1656 predicted Zn-dependent peptidase
YP_001320703.1	TIGRFAM: Sporulation lipoprotein YhcN/YlaJ; KEGG: ctc:CTC01534 hypothetical protein
YP_001320705.1	TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein, HSR1-related; Protein of unknown function DUF933; KEGG: cth:Cthe_0877 GTP-binding protein YchF
YP_001320706.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_001320707.1	PFAM: Propanediol utilization protein; KEGG: dsy:DSY2876 hypothetical protein
YP_001320708.1	PFAM: GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: lbl:LBL_1463 serine phosphatase RsbU, regulator of sigma subunit
YP_001320712.1	TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: tte:TTE2394 hypoxanthine-guanine phosphoribosyltransferase
YP_001320713.1	TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: bat:BAS1388 ATP:cob(I)alamin adenosyltransferase, putative
YP_001320714.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: fnu:FN0400 dipeptide transport ATP-binding protein dppF
YP_001320715.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: fnu:FN0399 dipeptide transport ATP-binding protein dppD
YP_001320716.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN0398 dipeptide transport system permease protein dppC
YP_001320717.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN0397 dipeptide transport system permease protein dppB
YP_001320718.1	PFAM: extracellular solute-binding protein, family 5; KEGG: fnu:FN0396 dipeptide-binding protein
YP_001320720.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: cpr:CPR_2254 oligopeptide ABC transporter, ATPase component
YP_001320721.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: sth:STH2824 oligopeptide ABC transporter ATP-binding protein
YP_001320722.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_2256 oligopeptide ABC transporter, permease component
YP_001320723.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_2554 oligopeptide/dipeptide ABC transporter, permease protein
YP_001320724.1	PFAM: extracellular solute-binding protein, family 5; KEGG: cpr:CPR_2258 bacterial extracellular solute-binding proteins, family 5 superfamily
YP_001320725.1	PFAM: NUDIX hydrolase; KEGG: ctc:CTC00982 phosphohydrolase (MutT family protein)
YP_001320727.1	PFAM: cytochrome c assembly protein; KEGG: mta:Moth_2200 cytochrome c assembly protein
YP_001320728.1	KEGG: mta:Moth_2199 ResB-like
YP_001320729.1	PFAM: cytochrome c552; KEGG: dsy:DSY2472 cytochrome c nitrite reductase catalytic subunit NrfA
YP_001320730.1	PFAM: amine oxidase; KEGG: ter:Tery_1366 amine oxidase
YP_001320731.1	PFAM: Acetamidase/Formamidase; KEGG: bha:BH0025 acetamidase
YP_001320732.1	KEGG: dsy:DSY0955 hypothetical protein
YP_001320734.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; SMART: PAS domain containing protein; KEGG: cth:Cthe_0408 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
YP_001320735.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; histidine kinase, HAMP region domain protein; KEGG: dsy:DSY1201 hypothetical protein
YP_001320736.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: dsy:DSY4418 hypothetical protein
YP_001320737.1	KEGG: dsy:DSY4419 hypothetical protein
YP_001320738.1	KEGG: dsy:DSY4420 hypothetical protein
YP_001320739.1	KEGG: dsy:DSY4421 hypothetical protein
YP_001320740.1	PFAM: regulatory protein, MerR; TipAS antibiotic-recognition domain protein; Transcription regulator MerR, DNA binding; KEGG: dsy:DSY4240 hypothetical protein
YP_001320741.1	KEGG: hypothetical membrane protein; K02040 phosphate   transport system substrate-binding protein
YP_001320742.1	PFAM: NUDIX hydrolase; KEGG: chy:CHY_1339 mutator MutT protein
YP_001320743.1	PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY3380 hypothetical protein
YP_001320744.1	PFAM: peptidase S41; KEGG: cth:Cthe_0744 copper amine oxidase-like protein
YP_001320745.1	KEGG: dsy:DSY3817 hypothetical protein
YP_001320746.1	PFAM: putative ammonia monooxygenase; KEGG: dsy:DSY3458 hypothetical protein
YP_001320747.1	PFAM: beta-lactamase domain protein; KEGG: ctc:CTC00790 zinc metallohydrolase
YP_001320749.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: btl:BALH_1994 phosphoglycolate phosphatase
YP_001320750.1	TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: lmf:LMOf2365_0567 carboxypeptidase, putative
YP_001320751.1	KEGG: lwe:lwe0497 membrane protein
YP_001320752.1	PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC01857 methyl-accepting chemotaxis protein
YP_001320753.1	PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: dsy:DSY2035 hypothetical protein
YP_001320754.1	TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35; KEGG: cno:NT01CX_1243 glycogen phosphorylase
YP_001320755.1	TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: bar:GBAA5120 glycogen synthase
YP_001320756.1	TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit; PFAM: Nucleotidyl transferase; KEGG: cth:Cthe_3167 glucose-1-phosphate adenylyltransferase, GlgD subunit
YP_001320757.1	TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cno:NT01CX_0723 glucose-1-phosphate adenylyltransferase
YP_001320758.1	TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; alpha amylase, C-terminal all-beta; SMART: alpha amylase, catalytic sub domain; KEGG: cth:Cthe_2191 1,4-alpha-glucan branching enzyme
YP_001320759.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY2081 hypothetical protein
YP_001320760.1	KEGG: bth:BT_1831 hypothetical protein
YP_001320761.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: dsy:DSY3754 hypothetical protein
YP_001320762.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: ppd:Ppro_2951 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
YP_001320763.1	PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; KEGG: mxa:MXAN_4097 D-alanine-D-alanine ligase family protein
YP_001320764.1	KEGG: tte:TTE0924 methionine synthase I, cobalamin-binding domain
YP_001320765.1	PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD/NADP octopine/nopaline dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; KEGG: tte:TTE0923 NAD/NADP octopine/nopaline dehydrogenas
YP_001320766.1	PFAM: initiator RepB protein; KEGG: gka:GKP02 replication initiator protein
YP_001320767.1	TIGRFAM: cytidyltransferase-related domain; citrate lyase ligase; PFAM: GCN5-related N-acetyltransferase; Citrate lyase ligase, C-terminal domain protein; KEGG: ctc:CTC02557 citrate (pro-3S)-lyase ligase
YP_001320768.1	catalyzes the reduction of tartronate semialdehyde to glycerate
YP_001320769.1	PFAM: chemotaxis sensory transducer; KEGG: dsy:DSY0999 hypothetical protein
YP_001320770.1	PFAM: Auxin Efflux Carrier; KEGG: bha:BH2670 hypothetical protein
YP_001320771.1	TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: mja:MJ1277 3-isopropylmalate dehydratase small subunit
YP_001320772.1	TIGRFAM: homoaconitate hydratase family protein; 3-isopropylmalate dehydratase; PFAM: aconitate hydratase domain protein; KEGG: mka:MK1440 3-isopropylmalate dehydratase large subunit
YP_001320773.1	PFAM: Citrate carrier protein; KEGG: tde:TDE2700 citrate carrier protein, CCS family
YP_001320774.1	PFAM: malic protein domain protein; malic protein, NAD-binding; KEGG: cno:NT01CX_2051 NADP-dependent malic enzyme, putative
YP_001320775.1	PFAM: response regulator receiver; KEGG: oih:OB3219 truncated two-component response regulator
YP_001320776.1	PFAM: ATP-binding region, ATPase domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: bat:BAS0545 sensory box histidine kinase
YP_001320777.1	PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: dsy:DSY4015 hypothetical protein
YP_001320778.1	PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: dsy:DSY0462 hypothetical protein
YP_001320779.1	KEGG: ctc:CTC00958 hypothetical protein
YP_001320780.1	KEGG: cth:Cthe_1210 hypothetical protein
YP_001320781.1	TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: fnu:FN0436 regulator of kinase autophosphorylation inhibitor
YP_001320782.1	PFAM: Allophanate hydrolase subunit 1; KEGG: tte:TTE1607 allophanate hydrolase subunit 1
YP_001320783.1	PFAM: protein of unknown function DUF1445; KEGG: sfu:Sfum_3393 protein of unknown function DUF1445
YP_001320784.1	KEGG: fnu:FN0438 branched chain amino acid transport system II carrier protein
YP_001320785.1	PFAM: LamB/YcsF family protein; KEGG: cjj:CJJ81176_1526 LamB/YcsF family protein
YP_001320786.1	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: gme:Gmet_0555 two component, sigma54 specific, transcriptional regulator, fis family
YP_001320787.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: atoS, atoC; sensor protein AtoS for response regulator AtoC
YP_001320788.1	PFAM: Na+/solute symporter; KEGG: pde:Pden_4529 Na+/solute symporter
YP_001320790.1	KEGG: lsa:LSA0870 hypothetical protein
YP_001320791.1	KEGG: sde:Sde_3690 hypothetical protein
YP_001320792.1	PFAM: ribonuclease H; KEGG: aba:Acid345_0088 ribonuclease H
YP_001320793.1	PFAM: protein of unknown function DUF34; KEGG: bat:BAS4191 conserved hypothetical protein TIGR00486
YP_001320794.1	PFAM: protein of unknown function DUF633; KEGG: tte:TTE1754 predicted SAM-dependent methyltransferase
YP_001320796.1	TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma-70; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: cth:Cthe_0895 RNA polymerase, sigma 38 subunit, RpoS
YP_001320797.1	synthesizes RNA primers at the replication forks
YP_001320798.1	PFAM: protein of unknown function DUF188; KEGG: cpf:CPF_2548 YaiI/YqxD family protein
YP_001320799.1	dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate
YP_001320800.1	PFAM: branched-chain amino acid transport; KEGG: dsy:DSY2397 hypothetical protein
YP_001320801.1	PFAM: AzlC family protein; KEGG: fnu:FN1039 branched-chain amino acid transport protein AzlC
YP_001320802.1	PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: bsu:BG12133 similar to transcriptional regulator (GntR family) / aminotransferase (MocR-like)
YP_001320803.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: lpl:lp_1425 fumarate reductase, flavoprotein subunit precursor
YP_001320804.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE2689 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain
YP_001320805.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: bce:BC4588 phosphate regulon sensor protein PhoR
YP_001320806.1	tryptophan indole-lyase; catalyzes the formation of indole and pyruvate from tryptophan
YP_001320807.1	KEGG: gka:GK3253 hypothetical protein
YP_001320808.1	PFAM: regulatory protein, TetR; KEGG: cno:NT01CX_0025 transcription regulator (TetR/AcrR family)
YP_001320809.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: lpl:lp_3491 fumarate reductase, flavoprotein subunit precursor
YP_001320810.1	PFAM: transposase, IS4 family protein; KEGG: wol:WD0563 transposase, IS4 family
YP_001320811.1	KEGG: cpf:CPF_2623 hypothetical protein
YP_001320812.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_001320813.1	TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: mac:MA2699 flavodoxin
YP_001320814.1	PFAM: protein of unknown function DUF156; KEGG: dsy:DSY0389 hypothetical protein
YP_001320815.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dge:Dgeo_2542 MATE efflux family protein
YP_001320817.1	PFAM: transcriptional regulator PadR family protein; KEGG: ctc:CTC00601 putative transcriptional regulator (PadR family)
YP_001320818.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_001320819.1	PFAM: protein of unknown function DUF299; KEGG: bcl:ABC1687 hypothetical protein
YP_001320820.1	PFAM: CBS domain containing protein; Helix-turn-helix, type 11 domain protein; KEGG: ctc:CTC02015 conserved protein with cbs domain
YP_001320821.1	Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001320822.1	PFAM: ubiquitin-associated- domain-containing protein; KEGG: tte:TTE0977 hypothetical protein
YP_001320823.1	TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O, RecO; KEGG: cth:Cthe_1066 DNA repair protein RecO
YP_001320825.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_001320826.1	TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: cpr:CPR_1988 cytidine deaminase
YP_001320827.1	KEGG: cth:Cthe_0155 hypothetical protein
YP_001320828.1	PFAM: protein of unknown function DUF502; KEGG: pca:Pcar_1826 hypothetical protein
YP_001320829.1	PFAM: phosphoesterase, PA-phosphatase related; diacylglycerol kinase; KEGG: tte:TTE0973 Diacylglycerol kinase
YP_001320830.1	PFAM: protein of unknown function UPF0054; KEGG: chy:CHY_0427 conserved hypothetical protein TIGR00043
YP_001320831.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; metal-dependent phosphohydrolase, 7TM intracellular region; metal-dependent phosphohydrolase, 7TM extracellular region; SMART: metal-dependent phosphohydrolase, HD region; KEGG: tte:TTE0971 predicted membrane-associated HD superfamily hydrolase
YP_001320832.1	PFAM: PhoH family protein; KEGG: tte:TTE0970 Phosphate starvation-inducible protein PhoH, predicted ATPase
YP_001320833.1	PFAM: putative stage IV sporulation YqfD; KEGG: tte:TTE0969 stage IV sporulation protein
YP_001320834.1	PFAM: protein of unknown function DUF1429; KEGG: cth:Cthe_1073 protein of unknown function DUF1429
YP_001320836.1	PFAM: protein of unknown function DUF1432; KEGG: cth:Cthe_0858 protein of unknown function DUF1432
YP_001320837.1	PFAM: protein of unknown function DUF107; KEGG: bld:BLi02730 YqeZ
YP_001320838.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: oih:OB1305 hypothetical protein
YP_001320839.1	PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase
YP_001320840.1	PFAM: GatB/Yqey domain protein; KEGG: cth:Cthe_1347 GatB/YqeY
YP_001320841.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_001320842.1	PFAM: histidine triad (HIT) protein; KEGG: tte:TTE0963 diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolase
YP_001320843.1	KEGG: cth:Cthe_0150 RNA modification enzyme, MiaB family; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB
YP_001320844.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_001320845.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_001320846.1	TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: cth:Cthe_1321 chaperone protein DnaJ
YP_001320847.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_001320848.1	PFAM: GrpE protein; KEGG: tte:TTE0954 Molecular chaperone GrpE (heat shock protein)
YP_001320849.1	TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: cpf:CPF_2292 heat-inducible transcription repressor HrcA
YP_001320850.1	KEGG: cth:Cthe_1325 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_001320851.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_001320853.1	PFAM: Stage II sporulation P family protein; KEGG: tte:TTE0947 stage II sporulation protein P
YP_001320854.1	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
YP_001320855.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_001320856.1	TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: cth:Cthe_1040 DNA polymerase III, delta subunit
YP_001320857.1	PFAM: ComEC/Rec2-related protein; KEGG: tte:TTE0941 predicted hydrolases of metallo-beta-lactamase fold
YP_001320859.1	PFAM: beta-lactamase domain protein; KEGG: cth:Cthe_3155 beta-lactamase-like protein
YP_001320860.1	PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cph:Cpha266_1841 TPR repeat-containing protein
YP_001320861.1	PFAM: beta-lactamase domain protein; KEGG: tte:TTE2430 predicted hydrolase of metallo-beta-lactamase fold
YP_001320863.1	KEGG: ctc:CTC02250 modification methylase bstVI
YP_001320864.1	KEGG: bha:BH2880 hypothetical protein
YP_001320867.1	KEGG: mta:Moth_2291 hypothetical protein
YP_001320868.1	PFAM: ABC-2 type transporter; KEGG: hso:HS_0849 ABC-type multidrug transport system, permease component
YP_001320869.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ajs:Ajs_0755 ABC transporter related
YP_001320870.1	PFAM: Amidohydrolase 3; KEGG: sth:STH1237 hypothetical protein
YP_001320871.1	PFAM: phosphatidylglycerophosphatase A; KEGG: tte:TTE0928 phosphatidylglycerophosphatase A
YP_001320872.1	PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: cno:NT01CX_0997 ATP-dependent RNA helicase
YP_001320873.1	PFAM: spore germination B3 GerAC family protein; KEGG: ctc:CTC02447 spore germination protein B3/KC
YP_001320874.1	PFAM: GerA spore germination protein; KEGG: ctc:CTC02448 spore germination protein KA
YP_001320875.1	TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: ctc:CTC02449 spore germination protein B2/KB
YP_001320876.1	PFAM: peptidase M19, renal dipeptidase; KEGG: tko:TK2040 microsomal dipeptidase homolog
YP_001320877.1	PFAM: protein of unknown function DUF214; KEGG: cac:CAC3561 ABC-type transporter, permease component
YP_001320878.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC3560 ABC-type transporter, ATPase component
YP_001320879.1	PFAM: secretion protein HlyD family protein; KEGG: cac:CAC0141 membrane permease, predicted cation efflux pumps
YP_001320880.1	PFAM: amino acid-binding ACT domain protein; MgtC/SapB transporter; KEGG: cth:Cthe_1919 MgtC/SapB transporter
YP_001320881.1	PFAM: protein of unknown function DUF112, transmembrane; KEGG: fnu:FN2105 integral membrane protein
YP_001320882.1	KEGG: fnu:FN2104 hypothetical protein
YP_001320883.1	PFAM: Uncharacterized protein UPF0065; KEGG: fnu:FN2103 RecA protein
YP_001320884.1	PFAM: Uncharacterized protein UPF0065; KEGG: fnu:FN2103 RecA protein
YP_001320885.1	TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; KEGG: cth:Cthe_1393 multi-sensor signal transduction histidine kinase
YP_001320886.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE1633 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain
YP_001320888.1	PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; KEGG: ctc:CTC02424 electron transfer flavoprotein alpha-subunit
YP_001320889.1	PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; KEGG: cpr:CPR_2285 electron transfer flavoprotein beta-subunit
YP_001320890.1	PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: fnu:FN0783 acyl-CoA dehydrogenase
YP_001320891.1	PFAM: MaoC domain protein dehydratase; KEGG: tte:TTE0551 predicted acyl dehydratase
YP_001320893.1	PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: swo:Swol_0656 NADH:ubiquinone oxidoreductase 24 kD subunit-like protein
YP_001320894.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: swo:Swol_0657 NADH dehydrogenase (quinone)
YP_001320895.1	PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: swo:Swol_0658 glutamate synthase beta chain-related oxidoreductase, containing 2Fe-2S and 4Fe-4S clusters
YP_001320897.1	Contains selenocysteine; PFAM: glutaredoxin; KEGG: rxy:Rxyl_1609 glutaredoxin-like protein, YruB
YP_001320898.1	KEGG: cac:CAC0545 uncharacterized small protein, homolog of Treponema (6136517)
YP_001320899.1	KEGG: bar:GBAA5476 hypothetical protein
YP_001320900.1	PFAM: glycosyl transferase, family 2; KEGG: bca:BCE_5356 glycosyl transferase domain protein, putative
YP_001320901.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: chy:CHY_1871 HDIG domain protein
YP_001320902.1	TIGRFAM: HflC protein; PFAM: band 7 protein; KEGG: dde:Dde_2947 HflC protein
YP_001320903.1	TIGRFAM: HflK protein; PFAM: band 7 protein; KEGG: lip:LI0675 membrane protease subunits, stomatin/prohibitin homologs
YP_001320904.1	KEGG: cth:Cthe_0434 ATPase
YP_001320905.1	PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal repeat, beta-propeller; KEGG: cth:Cthe_0306 DNA gyrase/topoisomerase IV, subunit A
YP_001320906.1	PFAM: DNA gyrase, subunit B domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; KEGG: cth:Cthe_0305 DNA topoisomerase (ATP-hydrolyzing)
YP_001320907.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: rba:RB7019 hypothetical protein
YP_001320908.1	PFAM: Endoribonuclease L-PSP; KEGG: pha:PSHAa0974 with YjgF-like domain highly conserved in gamma-proteobacteria
YP_001320909.1	PFAM: protein of unknown function DUF606; KEGG: cac:CAC3547 hypothetical protein
YP_001320910.1	PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: mth:MTH1484 hypothetical protein
YP_001320911.1	PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: ctc:CTC01191 TonB-dependent receptor protein
YP_001320912.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin)
YP_001320913.1	PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: ctc:CTC00427 glycerophosphoryl diester phosphodiesterase
YP_001320914.1	PFAM: glycine hydroxymethyltransferase; aminotransferase, class I and II; KEGG: pho:PH1654 serine hydroxymethyltransferase
YP_001320915.1	PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: dvu:DVU1700 metallo-beta-lactamase family protein
YP_001320916.1	PFAM: KWG Leptospira repeat protein; KEGG: chu:CHU_2188 hypothetical protein
YP_001320918.1	KEGG: lic:LIC10622 motility protein A
YP_001320920.1	PFAM: extracellular solute-binding protein, family 5; KEGG: cth:Cthe_0910 extracellular solute-binding protein, family 5
YP_001320921.1	PFAM: Lytic transglycosylase, catalytic; KEGG: cac:CAC1100 secreted protein, similar to catalytic domain of murein transglycosylase
YP_001320922.1	TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; KEGG: tte:TTE0875 dephospho-CoA kinase
YP_001320923.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_001320924.1	KEGG: hma:rrnAC0808 hypothetical protein
YP_001320925.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: cth:Cthe_0890 RNA polymerase, sigma-24 subunit, ECF subfamily
YP_001320926.1	PFAM: membrane-bound metal-dependent hydrolase; KEGG: dsy:DSY1801 hypothetical protein
YP_001320928.1	PFAM: transposase, IS4 family protein; KEGG: mhu:Mhun_1523 transposase, IS4
YP_001320931.1	PFAM: helix-turn-helix domain protein; KEGG: swo:Swol_1542 hypothetical protein
YP_001320935.1	TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: ctc:CTC01013 cobalt-zinc-cadmium resistance protein CzcD
YP_001320936.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: dsy:DSY4221 hypothetical protein
YP_001320937.1	TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: chy:CHY_2418 DegV family protein
YP_001320938.1	catalyzes the removal of amino acids from the N termini of peptides
YP_001320939.1	PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: cth:Cthe_1267 two component transcriptional regulator, LuxR family
YP_001320940.1	PFAM: ATP-binding region, ATPase domain protein; Sensor DegS domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: cth:Cthe_1268 histidine kinase
YP_001320942.1	PFAM: CheW domain protein; KEGG: chy:CHY_1030 chemotaxis protein CheW
YP_001320943.1	PFAM: protein of unknown function DUF896; KEGG: oih:OB1671 hypothetical protein
YP_001320946.1	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway
YP_001320947.1	catalyzes the degradation of histidine to urocanate and ammmonia
YP_001320948.1	PFAM: protein of unknown function UPF0180; KEGG: swo:Swol_1506 hypothetical protein
YP_001320949.1	PFAM: regulatory protein, MarR; KEGG: gka:GK2669 transcriptional regulator (MarR family)
YP_001320950.1	PFAM: peptidase M23B; KEGG: tte:TTE0841 membrane proteins related to metalloendopeptidase
YP_001320951.1	PFAM: protein of unknown function DUF583; KEGG: tte:TTE0840 hypothetical protein
YP_001320952.1	PFAM: diacylglycerol kinase, catalytic region; KEGG: bcz:BCZK0294 hypothetical protein
YP_001320953.1	PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: cth:Cthe_2689 transcriptional regulator, GntR family
YP_001320954.1	KEGG: cac:CAC1617 hypothetical protein
YP_001320955.1	PFAM: Aldehyde ferredoxin oxidoreductase-like; KEGG: mac:MA2962 aldehyde ferredoxin oxidoreductase
YP_001320956.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mma:MM3327 ferredoxin
YP_001320957.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0836 ABC-type multidrug/protein/lipid transport system, ATPase component
YP_001320958.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0835 ABC-type multidrug/protein/lipid transport system, ATPase component
YP_001320959.1	TIGRFAM: arginine deiminase; PFAM: amidinotransferase; KEGG: efa:EF0104 arginine deiminase
YP_001320960.1	TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP C-terminal domain protein; KEGG: oih:OB0554 histidinol phosphatase
YP_001320961.1	KEGG: gka:GK0630 hypothetical protein
YP_001320962.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sth:STH2889 hypothetical protein
YP_001320963.1	PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: cth:Cthe_2688 polysaccharide biosynthesis protein
YP_001320964.1	PFAM: PHP C-terminal domain protein; SMART: DNA polymerase X; phosphoesterase PHP domain protein; Helix-hairpin-helix DNA-binding, class 1; KEGG: tte:TTE2516 hypothetical DNA polymerase / putative histidinol phosphatase
YP_001320965.1	PFAM: MOSC domain containing protein; KEGG: ppd:Ppro_0303 MOSC domain containing protein
YP_001320966.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: cac:CAC2020 molybdopterin biosynthesis enzyme, MoeA, fused to molibdopterin-binding domain
YP_001320967.1	TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; KEGG: chy:CHY_0798 putative molybdopterin biosynthesis MoeA protein
YP_001320968.1	KEGG: ctc:CTC00531 ATP-dependent zinc metallopeptidase; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; SMART: AAA ATPase
YP_001320969.1	KEGG: cth:Cthe_0313 hypothetical protein
YP_001320971.1	TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: cpr:CPR_2089 pseudouridylate synthase family protein, yabo
YP_001320972.1	PFAM: ATP-NAD/AcoX kinase; KEGG: ljo:LJ0824 probable inorganic polyphosphate/ATP-NAD kinase
YP_001320973.1	PFAM: sodium:dicarboxylate symporter; KEGG: ctc:CTC00822 proton/sodium-glutamate symport protein
YP_001320974.1	PFAM: response regulator receiver; YcbB domain; KEGG: tte:TTE1203 CheY-like receiver domains
YP_001320975.1	KEGG: ctc:CTC00917 transposase
YP_001320979.1	PFAM: sodium:dicarboxylate symporter; KEGG: cno:NT01CX_0943 sodium:dicarboxylate symporter family protein
YP_001320980.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: tte:TTE0887 ferredoxin 2
YP_001320981.1	KEGG: dsy:DSY4194 hypothetical protein
YP_001320982.1	PFAM: protein of unknown function DUF1538; KEGG: dsy:DSY4195 hypothetical protein
YP_001320983.1	PFAM: NQR2 and RnfD family protein; KEGG: sth:STH897 Na+-transporting NADH-quinone reductase subunit 2
YP_001320984.1	PFAM: FMN-binding domain protein; KEGG: pgi:PG2180 NADH:ubiquinone oxidoreductase, Na translocating, C subunit
YP_001320985.1	PFAM: RnfA-Nqr electron transport subunit; KEGG: csa:Csal_1572 NADH:ubiquinone oxidoreductase, subunit D
YP_001320986.1	PFAM: RnfA-Nqr electron transport subunit; KEGG: vch:VC2291 NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE
YP_001320987.1	PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: nmc:NMC0505 putative Na(+)-translocating NADH-ubiquinone reductase subunit F
YP_001320988.1	KEGG: cno:NT01CX_1567 probable enzyme with TIM-barrel fold
YP_001320990.1	PFAM: aminotransferase class-III; KEGG: bcl:ABC2432 acetylornithine aminotransferase
YP_001320991.1	TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; KEGG: bld:BLi02996 aspartokinase II (alpha and beta subunits); RBL03770
YP_001320992.1	PFAM: transferase hexapeptide repeat containing protein; Tetrahydrodipicolinate succinyltransferase N-terminal domain protein; KEGG: gka:GK1049 putative tetrahydrodipicolinate N-acetyltransferase
YP_001320993.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_001320994.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_001320995.1	TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; KEGG: dvl:Dvul_0328 aspartate-semialdehyde dehydrogenase
YP_001320996.1	PFAM: Peptidoglycan-binding LysM; cell wall hydrolase, SleB; KEGG: dsy:DSY3257 hypothetical protein
YP_001320997.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dre:402904 zgc:109720
YP_001320998.1	TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: cac:CA_P0022 spore germination protein, GrkB
YP_001320999.1	PFAM: GerA spore germination protein; KEGG: chy:CHY_0336 spore germination protein GerKA
YP_001321000.1	PFAM: spore germination B3 GerAC family protein; KEGG: dsy:DSY2110 hypothetical protein
YP_001321002.1	TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: tte:TTE0297 Lipoate-protein ligase A
YP_001321003.1	PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: cpf:CPF_2132 FMN-dependent dehydrogenase
YP_001321005.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: cac:CAC2434 membrane associatehistidine kinase with HAMP domain
YP_001321006.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC2435 response regulator (CheY-like domain and HTH-type DNA-binding domain)
YP_001321007.1	TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: mta:Moth_1417 CoA enzyme activase
YP_001321008.1	PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component; KEGG: mta:Moth_1446 2-hydroxyglutaryl-CoA dehydratase, D-component
YP_001321009.1	PFAM: GerA spore germination protein; KEGG: bld:BLi02663 hypothetical protein
YP_001321010.1	TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; KEGG: bha:BH0745 magnesium citrate secondary transporter
YP_001321011.1	PFAM: aconitate hydratase domain protein; KEGG: dsy:DSY4204 aconitase A
YP_001321012.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cac:CAC3361 transcriptional regulator, LysR family
YP_001321013.1	TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; KEGG: saz:Sama_1053 oxaloacetate decarboxylase
YP_001321014.1	PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cth:Cthe_0700 biotin/lipoyl attachment protein
YP_001321015.1	PFAM: sodium pump decarboxylase, gamma subunit
YP_001321016.1	PFAM: carboxyl transferase; KEGG: tte:TTE2385 Acetyl-CoA carboxylase alpha subunit
YP_001321017.1	Converts oxaloacetate to phosphoenolpyruvate using ATP as an energy source
YP_001321018.1	PFAM: chemotaxis sensory transducer; KEGG: mba:Mbar_A0989 methyl-accepting chemotaxis protein
YP_001321019.1	PFAM: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; KEGG: ctc:CTC02556 citX protein
YP_001321020.1	TIGRFAM: citrate lyase, alpha subunit; PFAM: Citrate lyase, alpha subunit; KEGG: ctc:CTC02559 citrate lyase alpha chain
YP_001321021.1	PFAM: HpcH/HpaI aldolase; KEGG: fnu:FN1379 citrate lyase beta chain / citryl-CoA lyase subunit
YP_001321022.1	acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate
YP_001321023.1	PFAM: Citrate carrier protein; KEGG: ppr:PBPRA2296 putative citrate-sodium symporter
YP_001321024.1	PFAM: response regulator receiver; KEGG: cff:CFF8240_0377 DNA-binding response regulator
YP_001321025.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: ppd:Ppro_3165 signal transduction histidine kinase with CheB and CheR activity
YP_001321026.1	PFAM: malic protein domain protein; malic protein, NAD-binding; KEGG: ctc:CTC02463 NAD-dependent malic enzyme
YP_001321027.1	PFAM: putative sugar-binding domain protein; KEGG: cpr:CPR_1160 citrate lyase regulator, putative
YP_001321029.1	PFAM: ATP-binding region, ATPase domain protein; KEGG: mta:Moth_0022 periplasmic sensor signal transduction histidine kinase
YP_001321032.1	PFAM: Rhodanese domain protein; KEGG: dsy:DSY4705 hypothetical protein
YP_001321033.1	KEGG: mta:Moth_2212 hypothetical protein
YP_001321034.1	KEGG: mta:Moth_2211 hypothetical protein
YP_001321035.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mac:MA4409 hypothetical protein
YP_001321037.1	PFAM: BioY protein; KEGG: cac:CAC3456 uncharacterized conserved protein, bioY family
YP_001321038.1	KEGG: cpf:CPF_1795 biotin synthase; TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB
YP_001321039.1	PFAM: chemotaxis sensory transducer; KEGG: chy:CHY_1296 methyl-accepting chemotaxis protein
YP_001321042.1	PFAM: Dynamin family protein; GTP-binding protein, HSR1-related; KEGG: tte:TTE1899 predicted GTPase (dynamin-related)
YP_001321043.1	TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: cyb:CYB_2114 magnesium transporter
YP_001321044.1	KEGG: bca:BCE_A0242 Tn554-related, transposase A
YP_001321046.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; type IV pilus assembly PilZ; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; KEGG: dsy:DSY3381 hypothetical protein
YP_001321048.1	PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: cno:NT01CX_0096 positive regulator of sigma(E), RseC/MucC superfamily
YP_001321050.1	PFAM: YibE/F family protein; KEGG: cac:CAC2436 hypothetical protein
YP_001321051.1	PFAM: prolipoprotein diacylglyceryl transferase; KEGG: mta:Moth_1993 prolipoprotein diacylglyceryl transferase
YP_001321052.1	PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: gsu:GSU1320 sigma-54 dependent DNA-binding response regulator
YP_001321053.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: ecv:APECO1_4340 sensor protein AtoS
YP_001321054.1	KEGG: ctc:CTC00666 hypothetical protein
YP_001321055.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE2473 sensory transduction histidine kinase
YP_001321056.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE2474 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain
YP_001321058.1	KEGG: pna:Pnap_4519 isoprenylcysteine carboxyl methyltransferase
YP_001321059.1	PFAM: NLP/P60 protein; S-layer domain protein; KEGG: mta:Moth_2104 NLP/P60
YP_001321064.1	Contains selenocysteine; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: gka:GK0592 hypothetical protein
YP_001321065.1	PFAM: SNARE associated Golgi protein; KEGG: ljo:LJ0674 hypothetical protein
YP_001321066.1	KEGG: mac:MA1327 hypothetical protein
YP_001321067.1	PFAM: Heavy metal transport/detoxification protein; KEGG: dsy:DSY4509 hypothetical protein
YP_001321068.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: aeh:Mlg_1383 heavy metal translocating P-type ATPase
YP_001321070.1	TIGRFAM: integral membrane protein TIGR01906; PFAM: Integral membrane protein 1906; KEGG: tte:TTE1993 hypothetical protein
YP_001321071.1	TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: mfa:Mfla_2304 40-residue YVTN beta-propeller repeat
YP_001321075.1	PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ajs:Ajs_2160 methyltransferase type 11
YP_001321076.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_2566 radical SAM
YP_001321077.1	PFAM: manganese containing catalase; KEGG: cac:CAC2800 CotJC-like protein (GS80 family)
YP_001321079.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: tte:TTE0042 HD-GYP domain
YP_001321080.1	SMART: Rhodanese domain protein; KEGG: ppr:PBPRA1240 putative thiosulfate sulfur transferase
YP_001321081.1	PFAM: Rhodanese domain protein; KEGG: cpr:CPR_1124 putative thiosulfate sulfurtransferase
YP_001321082.1	PFAM: ABC transporter related; transport-associated protein OB domain protein; SMART: AAA ATPase; KEGG: cpe:CPE1270 probable ABC transporter
YP_001321083.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nca:Noca_2070 binding-protein-dependent transport systems inner membrane component
YP_001321084.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0308 ABC transporter, permease protein, putative
YP_001321085.1	KEGG: dde:Dde_0759 extracellular solute-binding protein, putative
YP_001321086.1	PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cpf:CPF_0561 CDP-alcohol phosphatidyltransferase family protein
YP_001321087.1	PFAM: SNARE associated Golgi protein; KEGG: dsy:DSY2706 hypothetical protein
YP_001321088.1	PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: cpr:CPR_2072 cysteine-rich domain protein
YP_001321089.1	SMART: Rhodanese domain protein; KEGG: mac:MA0746 hypothetical protein
YP_001321090.1	PFAM: protein of unknown function DUF450; KEGG: mma:MM2204 putative type I restriction enzyme R protein
YP_001321091.1	KEGG: tde:TDE0367 hypothetical protein
YP_001321092.1	KEGG: zmo:ZMO0901 hypothetical protein
YP_001321093.1	PFAM: TrkA-N domain protein; KEGG: cpr:CPR_1854 potassium uptake protein
YP_001321095.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dsy:DSY3761 hypothetical protein
YP_001321096.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: dsy:DSY3762 hypothetical protein
YP_001321097.1	PFAM: TrkA-N domain protein; KEGG: cth:Cthe_1659 TrkA-N
YP_001321098.1	TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: cth:Cthe_1658 potassium uptake protein, TrkH family
YP_001321100.1	PFAM: Citrate transporter; Na+/H+ antiporter NhaC; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ctc:CTC02311 transport protein (putative Na+/H+ antiporter, similar to hisidine permease)
YP_001321101.1	PFAM: PspC domain protein; KEGG: dsy:DSY4047 hypothetical protein
YP_001321103.1	PFAM: protein of unknown function DUF624; KEGG: bha:BH2108 hypothetical protein
YP_001321104.1	PFAM: glycoside hydrolase, family 43; KEGG: oih:OB3125 xylan 1,4-beta-xylosidase
YP_001321105.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3682 multiple sugar transport system permease protein
YP_001321106.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3681 multiple sugar transport system permease protein
YP_001321107.1	PFAM: extracellular solute-binding protein, family 1; KEGG: bha:BH3680 multiple sugar transport system substrate-binding protein
YP_001321108.1	PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: bha:BH3679 two-component response regulator
YP_001321109.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase internal region; KEGG: bha:BH3678 two-component sensor histidine kinase
YP_001321110.1	PFAM: ABC transporter related; TOBE domain protein; transport-associated protein OB domain protein; SMART: AAA ATPase; KEGG: tte:TTE1979 ABC-type sugar/spermidine/putrescine/iron/thiamine transport systems, ATPase component
YP_001321111.1	KEGG: cth:Cthe_1861 transcriptional regulator, CdaR
YP_001321112.1	PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin; KEGG: oih:OB0530 carboxypeptidase
YP_001321113.1	TIGRFAM: xanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: cpr:CPR_0313 xanthine phosphoribosyltransferase
YP_001321114.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: pfu:PF0194 dipeptide ABC transporter, ATP-binding protein
YP_001321115.1	TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: pol:Bpro_4402 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like
YP_001321116.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_4403 binding-protein-dependent transport systems inner membrane component
YP_001321117.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_4405 binding-protein-dependent transport systems inner membrane component
YP_001321118.1	PFAM: extracellular solute-binding protein, family 5; KEGG: pol:Bpro_4406 twin-arginine translocation pathway signal
YP_001321119.1	PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: cth:Cthe_0614 pyruvate ferredoxin/flavodoxin oxidoreductase
YP_001321120.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: swo:Swol_1196 thiamine pyrophosphate enzyme
YP_001321121.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_001321122.1	PFAM: PP-loop domain protein; KEGG: cpr:CPR_1477 PP-loop family protein
YP_001321123.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC00588 ABC transporter ATP-binding protein
YP_001321125.1	PFAM: creatinase; peptidase M24; KEGG: cpe:CPE2497 probable proline dipeptidase
YP_001321126.1	YBDT Bacillus subtilis ortholog; KEGG: cac:CAC3330 cytochrome P450 family protein, YBDT B.subtilis ortholog
YP_001321127.1	KEGG: sth:STH2800 hypothetical protein
YP_001321129.1	KEGG: bha:BH1975 hypothetical protein
YP_001321130.1	KEGG: bha:BH1976 hypothetical protein
YP_001321131.1	PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: bha:BH1977 hypothetical protein
YP_001321132.1	PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: bha:BH1977 hypothetical protein
YP_001321133.1	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: bha:BH1978 hypothetical protein
YP_001321134.1	KEGG: bha:BH1979 hypothetical protein
YP_001321135.1	decatenates replicating daughter chromosomes
YP_001321136.1	PFAM: Abortive infection protein; KEGG: ana:alr7029 unknown protein
YP_001321137.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bcz:BCZK2223 ATP-dependent RNA helicase
YP_001321138.1	PFAM: Abortive infection protein; KEGG: bcz:BCZK4727 CAAX amino terminal protease family protein
YP_001321142.1	PFAM: protein of unknown function UPF0150; KEGG: mta:Moth_0249 hypothetical protein
YP_001321143.1	PFAM: YcfA family protein; KEGG: mta:Moth_0250 YcfA-like
YP_001321144.1	PFAM: Streptomycin adenylyltransferase; KEGG: bce:BC1959 aminoglycoside 6-adenylyltransferase
YP_001321145.1	KEGG: pab:PAB1336 methyl-accepting chemotaxis protein
YP_001321146.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: mac:MA4626 reverse transcriptase
YP_001321147.1	PFAM: Resolvase, N-terminal domain; KEGG: fra:Francci3_2088 recombinase
YP_001321148.1	KEGG: mac:MA4628 reverse transcriptase
YP_001321149.1	KEGG: sfu:Sfum_3865 hypothetical protein
YP_001321150.1	PFAM: putative transposase; KEGG: aeh:Mlg_1798 putative transposase
YP_001321151.1	PFAM: SpoVT/AbrB domain protein; KEGG: sru:SRU_2815 putative addiction module antidote
YP_001321152.1	TIGRFAM: death-on-curing family protein; PFAM: Death-on-curing protein; KEGG: ana:alr9029 putative death on curing protein
YP_001321153.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bce:BC2992 ribosomal-protein-alanine acetyltransferase
YP_001321154.1	PFAM: GCN5-related N-acetyltransferase; KEGG: oih:OB2857 hypothetical protein
YP_001321156.1	PFAM: protein of unknown function DUF891; KEGG: hin:HI0660 hypothetical protein
YP_001321157.1	PFAM: helix-turn-helix domain protein; KEGG: gme:Gmet_0315 transcriptional regulator, XRE family
YP_001321158.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0281 ABC transporter, ATP-binding protein
YP_001321159.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_2868 ABC transporter, ATP-binding protein
YP_001321160.1	PFAM: dihydropteroate synthase, DHPS; homocysteine S-methyltransferase; Methionine synthase, B12-binding module, cap domain protein; cobalamin B12-binding domain protein; KEGG: ctc:CTC01806 5-methyltetrahydrofolate--homocysteine methyltransferase
YP_001321161.1	PFAM: Vitamin B12 dependent methionine synthase, activation region; KEGG: ctc:CTC01807 putative 5-methyltetrahydrofolate--homocysteine methyltransferase
YP_001321162.1	PFAM: methylenetetrahydrofolate reductase; KEGG: cth:Cthe_0099 5,10-methylenetetrahydrofolate reductase
YP_001321163.1	TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aminotransferase, class I and II; KEGG: lmf:LMOf2365_0624 O-acetylhomoserine (thiol)-lyase
YP_001321164.1	PFAM: SCP-like extracellular protein; KEGG: bha:BH2878 hypothetical protein
YP_001321165.1	TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; protein of unknown function DUF201; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain, oligomerisation; Carbamoyl-phosphate synthetase large chain domain protein; MGS domain protein; KEGG: tte:TTE0816 Carbamoylphosphate synthase large subunit (split gene in MJ)
YP_001321166.1	TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl-phosphate synthase, small chain; KEGG: cth:Cthe_0950 carbamoyl-phosphate synthase, small subunit
YP_001321167.1	TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; KEGG: mta:Moth_2287 acetylornithine and succinylornithine aminotransferases
YP_001321168.1	TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: mta:Moth_2288 acetylglutamate kinase
YP_001321169.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_001321170.1	TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; KEGG: dsy:DSY0760 hypothetical protein
YP_001321171.1	TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: bfs:BF3378 putative peptide methionine sulfoxide reductase
YP_001321172.1	PFAM: response regulator receiver; ANTAR domain protein; KEGG: mta:Moth_1295 response regulator receiver (CheY-like) and ANTAR domain protein
YP_001321173.1	TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; KEGG: mta:Moth_1294 glutamine synthetase, type I
YP_001321174.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001321175.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_001321176.1	TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; KEGG: cac:CAC2978 Glu-tRNA amidotransferase, subunit C
YP_001321177.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_001321178.1	PFAM: nitrogen regulatory protein P-II; KEGG: cac:CAC0681 nitrogen regulatory protein PII, gene nrgB
YP_001321179.1	TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: bth:BT_0544 ammonium transporter
YP_001321180.1	PFAM: phosphoesterase, DHHA1; Threonyl/alanyl tRNA synthetase, SAD; KEGG: cpf:CPF_0714 DHHA1 domain protein
YP_001321181.1	TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bcz:pE33L466_0272 transposase
YP_001321182.1	PFAM: transposase IS200-family protein; KEGG: ctc:CTC00621 transposase
YP_001321183.1	PFAM: Auxin Efflux Carrier; KEGG: ssp:SSP0142 putative permease
YP_001321184.1	PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: cac:CAC1673 large subunit of NADH-dependent glutamate synthase
YP_001321185.1	PFAM: amino acid-binding ACT domain protein; KEGG: cth:Cthe_0409 ACT domain-containing protein
YP_001321186.1	PFAM: protein of unknown function DUF711; KEGG: ctc:CTC01034 hypothetical protein
YP_001321187.1	TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein, central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: cth:Cthe_2714 acetolactate synthase, large subunit, biosynthetic type
YP_001321188.1	TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: cth:Cthe_2713 dihydroxy-acid dehydratase
YP_001321189.1	TIGRFAM: ketol-acid reductoisomerase; PFAM: acetohydroxy acid isomeroreductase; Acetohydroxy acid isomeroreductase, catalytic domain protein; KEGG: tte:TTE0015 Ketol-acid reductoisomerase
YP_001321190.1	TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: cth:Cthe_2517 acetolactate synthase, small subunit
YP_001321191.1	catalyzes the formation of 2-oxobutanoate from L-threonine
YP_001321192.1	PFAM: Collagen triple helix repeat; KEGG: ter:Tery_0397 phage tail collar
YP_001321193.1	PFAM: glycosyl transferase, family 2; KEGG: dsy:DSY4437 hypothetical protein
YP_001321194.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive
YP_001321195.1	PFAM: triphosphoribosyl-dephospho-CoA protein; KEGG: ctc:CTC02555 citG protein
YP_001321196.1	TIGRFAM: citrate lyase, alpha subunit; PFAM: Citrate lyase, alpha subunit; KEGG: ctc:CTC02559 citrate lyase alpha chain
YP_001321197.1	PFAM: HpcH/HpaI aldolase; KEGG: ctc:CTC02560 citrate lyase beta chain
YP_001321198.1	acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate
YP_001321199.1	TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region; KEGG: ctc:CTC02561 fumarate hydratase subunit B
YP_001321200.1	Catalyzes the reversible hydration of fumaric acid to yield I-malic acid
YP_001321201.1	PFAM: methylaspartate ammonia-lyase; KEGG: ctc:CTC02563 methylaspartate ammonia-lyase
YP_001321202.1	TIGRFAM: methylaspartate mutase, E subunit; PFAM: methylaspartate mutase E subunit; KEGG: ctc:CTC02565 glutamate mutase, MutE
YP_001321203.1	converts methylaspartate to L-glutamate
YP_001321204.1	PFAM: regulatory protein GntR, HTH; KEGG: ctc:CTC02569 transcriptional regulator, putative regular for glutamate degradation
YP_001321205.1	TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein, central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: eba:ebA4751 putative acetolactate synthase large subunit
YP_001321206.1	TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: eca:ECA3849 acetolactate synthase isozyme I small subunit
YP_001321207.1	PFAM: Domain of unknown function DUF1846; KEGG: ctc:CTC00401 ATP-dependent Zn protease
YP_001321209.1	KEGG: pca:Pcar_1367 hypothetical protein
YP_001321210.1	KEGG: bce:BC0877 IG hypothetical 16724
YP_001321211.1	KEGG: bld:BLi01055 YheD
YP_001321212.1	KEGG: bsu:BG13036 similar to hypothetical proteins from B. subtilis
YP_001321213.1	PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; KEGG: cth:Cthe_0977 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase
YP_001321214.1	PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: bha:BH1535 D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
YP_001321215.1	KEGG: bsu:BG13036 similar to hypothetical proteins from B. subtilis
YP_001321216.1	KEGG: bsu:BG13036 similar to hypothetical proteins from B. subtilis
YP_001321217.1	PFAM: SCP-like extracellular protein; KEGG: sth:STH564 hypothetical protein
YP_001321218.1	KEGG: mta:Moth_1267 hypothetical protein
YP_001321221.1	KEGG: mta:Moth_1269 hypothetical protein
YP_001321222.1	KEGG: cth:Cthe_0923 hypothetical protein
YP_001321223.1	PFAM: glycosyl transferase, family 2; KEGG: bld:BLi00807 hypothetical protein
YP_001321224.1	PFAM: Collagen triple helix repeat; KEGG: bld:BLi00801 hypothetical protein
YP_001321225.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: tte:TTE0651 predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis
YP_001321226.1	PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase-like; KEGG: tth:TTC0288 UDP-N-acetyl-D-mannosamine 6-dehydrogenase
YP_001321228.1	KEGG: bld:BLi00805 hypothetical protein
YP_001321229.1	PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; Male sterility C-terminal domain; KEGG: pfu:PF1788 UDP-glucose 4-epimerase
YP_001321230.1	KEGG: bsu:BG13318 spore protein
YP_001321231.1	PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; homoserine dehydrogenase, NAD-binding; KEGG: swo:Swol_0706 putative oxidoreductase
YP_001321232.1	KEGG: swo:Swol_0704 hexapeptide transferase family protein
YP_001321233.1	KEGG: bld:BLi01055 YheD
YP_001321235.1	KEGG: swo:Swol_1168 YheD
YP_001321237.1	PFAM: glycosyl transferase, family 2; KEGG: mta:Moth_1660 glycosyl transferase, family 2
YP_001321238.1	KEGG: mta:Moth_1659 hypothetical protein
YP_001321239.1	PFAM: glycosyl transferase, group 1; KEGG: mta:Moth_1658 glycosyl transferase, group 1
YP_001321240.1	KEGG: mta:Moth_1657 hypothetical protein
YP_001321241.1	TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cac:CAC3284 uncharacterized conserved protein, DegV family
YP_001321242.1	TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: cth:Cthe_2209 3-isopropylmalate dehydrogenase
YP_001321243.1	TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: cth:Cthe_2210 3-isopropylmalate dehydratase, small subunit
YP_001321244.1	TIGRFAM: homoaconitate hydratase family protein; 3-isopropylmalate dehydratase, large subunit; 3-isopropylmalate dehydratase; PFAM: aconitate hydratase domain protein; KEGG: cth:Cthe_2211 3-isopropylmalate dehydratase, large subunit
YP_001321245.1	TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: gme:Gmet_1265 2-isopropylmalate synthase
YP_001321246.1	KEGG: mma:MM0519 hypothetical protein
YP_001321247.1	TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC01488 fumarate reductase flavoprotein subunit
YP_001321248.1	PFAM: Citrate transporter; Na+/H+ antiporter NhaC; KEGG: bce:BC0373 Na+/H+ antiporter NnaC
YP_001321249.1	PFAM: protein of unknown function DUF520; KEGG: dsy:DSY1969 hypothetical protein
YP_001321251.1	PFAM: protein of unknown function DUF1456; KEGG: bce:BC0368 hypothetical cytosolic protein
YP_001321253.1	PFAM: Ferritin, Dps family protein; KEGG: fnu:FN1079 neutrophil-activating protein A
YP_001321254.1	TIGRFAM: choline/carnitine/betaine transporter; PFAM: BCCT transporter; KEGG: hwa:HQ1765A probable glycine betaine transport protein
YP_001321255.1	TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; KEGG: tte:TTE1005 Glucose-6-phosphate 1-dehydrogenase
YP_001321256.1	similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate
YP_001321257.1	TIGRFAM: 6-phosphogluconolactonase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: osa:4346232 Os08g0547100
YP_001321258.1	PFAM: S-layer domain protein
YP_001321259.1	KEGG: gka:GK3175 hypothetical protein
YP_001321260.1	PFAM: Fimbrial assembly family protein; KEGG: cno:NT01CX_1597 fimbrial assembly protein (PilN) superfamily
YP_001321261.1	TIGRFAM: type IV pilus assembly protein PilM; KEGG: cno:NT01CX_1603 probable fimbrial assembly protein, putative
YP_001321262.1	PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; KEGG: tte:TTE1266 leader peptidase (prepilin peptidase) / N-methyltransferase
YP_001321266.1	KEGG: cpf:CPF_2566 putative type IV pilin
YP_001321267.1	PFAM: type II secretion system protein; KEGG: tte:TTE1264 General secretory pathway protein F
YP_001321268.1	TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: tte:TTE1263 predicted ATPases involved in pili biogenesis, PilT homologs
YP_001321269.1	PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: tte:TTE1262 predicted ATPases involved in pili biogenesis, PilB homologs
YP_001321270.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; metal-dependent phosphohydrolase, HD sub domain; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; metal-dependent phosphohydrolase, HD region; KEGG: swo:Swol_2483 putative PAS/PAC sensor protein
YP_001321271.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: gme:Gmet_1690 radical SAM
YP_001321272.1	PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY4423 hypothetical protein
YP_001321273.1	PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cac:CAC3419 S-adenosylmethionine-dependent methyltransferase
YP_001321274.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY4423 hypothetical protein
YP_001321275.1	KEGG: hch:HCH_01946 hypothetical protein
YP_001321276.1	KEGG: chu:CHU_0264 hypothetical protein
YP_001321277.1	PFAM: aminotransferase, class I and II; KEGG: mta:Moth_1955 aminotransferase, class I and II
YP_001321278.1	KEGG: btk:BT9727_4274 conserved hypothetical protein, possible methyltransferase
YP_001321279.1	TIGRFAM: small GTP-binding protein; sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: cth:Cthe_2537 sulfate adenylyltransferase, large subunit
YP_001321280.1	with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
YP_001321281.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cac:CAC0105 ferredoxin
YP_001321282.1	catalyzes the reduction of adenosine 5'-phosphosulfate to AMP and sulfite
YP_001321283.1	PFAM: adenylylsulfate kinase; KEGG: cac:CAC0103 adenylylsulfate kinase
YP_001321284.1	TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: gme:Gmet_2857 sodium/sulphate symporter
YP_001321286.1	PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: wsu:WS1004 hypothetical protein
YP_001321287.1	PFAM: Mov34/MPN/PAD-1 family protein; KEGG: cth:Cthe_2540 Mov34/MPN/PAD-1
YP_001321288.1	PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: cth:Cthe_2539 UBA/ThiF-type NAD/FAD binding fold
YP_001321289.1	TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: cth:Cthe_2538 thiamine biosynthesis protein ThiS
YP_001321290.1	TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: btk:BT9727_3116 probable transcriptional regulator
YP_001321291.1	PFAM: regulatory protein, TetR; KEGG: cac:CAC2605 transcriptional regulator (TetR/AcrR family)
YP_001321292.1	KEGG: bha:BH1891 hypothetical protein
YP_001321295.1	PFAM: OsmC family protein; KEGG: cph:Cpha266_1001 OsmC family protein
YP_001321296.1	PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: dsy:DSY4242 hypothetical protein
YP_001321297.1	PFAM: protein of unknown function DUF112, transmembrane; KEGG: bha:BH2009 hypothetical protein
YP_001321299.1	PFAM: Uncharacterized protein UPF0065; KEGG: bha:BH2007 hypothetical protein
YP_001321300.1	TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: HhH-GPD family protein; Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; KEGG: dsy:DSY2079 hypothetical protein
YP_001321301.1	PFAM: pyruvate carboxyltransferase; KEGG: tte:TTE0472 homocitrate synthase
YP_001321302.1	KEGG: mgm:Mmc1_0047 ferredoxin, 2Fe-2S
YP_001321303.1	TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cac:CAC0259 fusion nifN/K+nifB (nifN-nitrogenase iron molybdenum cofactor biosinthesis protein, nifK-nitrogenase molibdenum-iron protein beta chain, nifB-nitrogenase iron-molibdenum cofactor biosynthesis protein)
YP_001321304.1	PFAM: oxidoreductase/nitrogenase, component 1; KEGG: cac:CAC0259 fusion nifN/K+nifB (nifN-nitrogenase iron molybdenum cofactor biosinthesis protein, nifK-nitrogenase molibdenum-iron protein beta chain, nifB-nitrogenase iron-molibdenum cofactor biosynthesis protein)
YP_001321305.1	TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: cac:CAC0258 nitrogenase iron-molibdenum cofactor biosinthesis protein, gene nifE
YP_001321306.1	TIGRFAM: nitrogenase molybdenum-iron protein beta chain; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: cac:CAC0257 nitrogenase molibdenum-iron protein, beta chain, gene nifK
YP_001321307.1	TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: cac:CAC0256 nitrogenase molybdenum-iron protein, alpha chain (nitrogenase component I) gene nifD
YP_001321308.1	PFAM: nitrogen regulatory protein P-II; KEGG: cac:CAC0255 nitrogen regulatory protein PII (nitrogen fixation nifHD)
YP_001321309.1	PFAM: nitrogen regulatory protein P-II; KEGG: cac:CAC0254 nitrogen regulatory protein PII (nitrogen fixation nifHD)
YP_001321310.1	TIGRFAM: nitrogenase iron protein; PFAM: NifH/frxC-family protein; KEGG: cac:CAC0253 nitrogenase iron protein (nitrogenase component II) gene nifH
YP_001321316.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: oih:OB0241 C4-dicarboxylate transport system permease large protein
YP_001321317.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: dsy:DSY4744 hypothetical protein
YP_001321318.1	TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bha:BH2673 C4-dicarboxylate transport system (C4-dicarboxylate-binding protein)
YP_001321319.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_001321320.1	PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: cno:NT01CX_0496 two-component response regulator
YP_001321321.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase internal region; Cupin 2, conserved barrel domain protein; KEGG: cpf:CPF_1171 sensor histidine kinase
YP_001321322.1	PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; KEGG: cth:Cthe_1221 glycosyltransferase 36
YP_001321323.1	PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; KEGG: cth:Cthe_1079 nucleotidyl transferase
YP_001321324.1	PFAM: S-layer domain protein; peptidase M20; peptidase M28; KEGG: bha:BH3865 hypothetical protein
YP_001321326.1	KEGG: bce:BC0624 von Willebrand factor type A domain protein
YP_001321327.1	PFAM: ATPase associated with various cellular activities, AAA_5; KEGG: bld:BLi02262 YojN
YP_001321328.1	KEGG: dsy:DSY0092 hypothetical protein
YP_001321330.1	TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dsy:DSY1025 hypothetical protein
YP_001321331.1	KEGG: mta:Moth_1442 hypothetical protein
YP_001321332.1	PFAM: SirA family protein; KEGG: gsu:GSU2521 hypothetical protein
YP_001321333.1	KEGG: chy:CHY_0235 hypothetical protein
YP_001321334.1	PFAM: protein of unknown function DUF214; KEGG: bld:BLi04210 similar to ABC transporter (permease); RBL02069
YP_001321335.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB0833 ABC transporter ATP-binding protein
YP_001321336.1	PFAM: protein of unknown function DUF214; KEGG: ctc:pE88_26 ABC transporter-associated permease
YP_001321337.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:pE88_25 ABC transporter ATP-binding protein
YP_001321338.1	PFAM: ATP-binding region, ATPase domain protein; KEGG: ctc:pE88_23 two-component sensor histidine kinase
YP_001321339.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ctc:pE88_22 two-component response regulator
YP_001321341.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein
YP_001321342.1	PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22)
YP_001321344.1	PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: fnu:FN0219 autolysin response regulator
YP_001321346.1	KEGG: cth:Cthe_2966 hypothetical protein
YP_001321348.1	PFAM: ATP-binding region, ATPase domain protein; KEGG: dsy:DSY2529 hypothetical protein
YP_001321349.1	PFAM: ATP-binding region, ATPase domain protein; KEGG: dsy:DSY2529 hypothetical protein
YP_001321351.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_001321352.1	PFAM: TrkA-C domain protein; KEGG: cpr:CPR_0508 TrkA domain protein
YP_001321353.1	KEGG: cac:CAC0715 fusion ribonuclease and ribosomal protein S1 domain; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein
YP_001321354.1	PFAM: protein of unknown function DUF1294; KEGG: btk:BT9727_3318 hypothetical protein
YP_001321355.1	pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient
YP_001321356.1	TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: swo:Swol_0277 preprotein translocase, SecG subunit
YP_001321357.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_001321358.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_001321359.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_001321360.1	PFAM: phosphoglycerate kinase; KEGG: cth:Cthe_0138 phosphoglycerate kinase
YP_001321361.1	TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: chy:CHY_0280 glyceraldehyde-3-phosphate dehydrogenase, type I
YP_001321362.1	PFAM: putative sugar-binding domain protein; KEGG: tte:TTE1763 Transcriptional regulator, contains sigma factor-related N-terminal domain
YP_001321363.1	TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor, core-binding region; sigma-54, DNA-binding domain protein; KEGG: dsy:DSY4842 hypothetical protein
YP_001321364.1	PFAM: inner-membrane translocator; KEGG: tpa:TP0323 putative simple sugar transport system permease protein
YP_001321365.1	PFAM: inner-membrane translocator; KEGG: tpa:TP0322 putative simple sugar transport system permease protein
YP_001321366.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_1831 ABC transporter, ATP-binding protein
YP_001321367.1	PFAM: Radical SAM domain protein; KEGG: hin:HI0520 hypothetical protein
YP_001321368.1	KEGG: hin:HI0521 hypothetical protein
YP_001321369.1	PFAM: basic membrane lipoprotein; KEGG: tpa:TP0319 putative simple sugar transport system substrate-binding protein
YP_001321370.1	PFAM: fatty acid synthesis plsX protein; KEGG: tte:TTE1874 fatty acid/phospholipid biosynthesis enzyme
YP_001321371.1	PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: tte:TTE1875 3-oxoacyl-(acyl-carrier-protein) synthase III
YP_001321372.1	KEGG: chy:CHY_2393 glycine reductase, selenoprotein B; Contains selenocysteine; TIGRFAM: glycine reductase, selenoprotein B; selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; PFAM: Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase
YP_001321373.1	GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin
YP_001321374.1	PFAM: Glycine/sarcosine/betaine reductase complex, protein B, alpha and beta subunits; KEGG: tte:TTE1879 GrdE proprotein
YP_001321375.1	PFAM: Thioredoxin domain; KEGG: tte:TTE1880 Thiol-disulfide isomerase and thioredoxins
YP_001321376.1	TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; FAD dependent oxidoreductase; KEGG: tte:TTE1881 thioredoxin reductase
YP_001321377.1	KEGG: tte:TTE1882 GrdX protein
YP_001321378.1	TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cno:NT01CX_0894 DegV family protein
YP_001321379.1	PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: tte:TTE0253 predicted rRNA methylase (SpoU class)
YP_001321381.1	KEGG: cac:CAC0787 uncharacterized conserved protein, repeats
YP_001321382.1	KEGG: cac:CAC0786 uncharacterized conserved protein, repeats
YP_001321383.1	PFAM: Semialdehyde dehydrogenase, NAD - binding; oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: bat:BAS3390 oxidoreductase, Gfo/Idh/MocA family
YP_001321384.1	PFAM: uncharacterised conserved protein UCP033563; KEGG: cac:CAC0016 related to HTH domain of SpoOJ/ParA/ParB/repB family, involved in chromosome partitioning
YP_001321385.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: cac:CAC0015 D-3-phosphoglycerate dehydrogenase
YP_001321386.1	PFAM: aminotransferase, class V; KEGG: cac:CAC0014 aminotransferase
YP_001321387.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_001321388.1	TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: sth:STH524 hypothetical protein
YP_001321389.1	PFAM: protein of unknown function DUF362; KEGG: mma:MM1795 iron-sulfur cluster-binding protein
YP_001321390.1	PFAM: S-layer domain protein; metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: efa:EF0062 5'-nucleotidase family protein
YP_001321391.1	PFAM: Peptidoglycan-binding LysM; metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: bcl:ABC0966 nucleotidase
YP_001321392.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF362; KEGG: dsy:DSY4491 hypothetical protein
YP_001321393.1	TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: ctc:CTC00366 predicted hydrolase
YP_001321394.1	PFAM: ferric-uptake regulator; KEGG: tte:TTE1767 Fe2+/Zn2+ uptake regulation proteins
YP_001321395.1	cobalamin biosynthesis protein; decarboxylates L-threonine-O-3-phosphate to yield (R)-1-amino-2-propanol O-2-phosphate, the precursor for the linkage between the nucleotide loop and the corrin ring in cobalamin; structurally similar to histidinol phosphate aminotransferase
YP_001321396.1	TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: cno:NT01CX_2082 cobalamin biosynthesis protein CobD
YP_001321397.1	TIGRFAM: cobyric acid synthase CobQ; PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: ctc:CTC00720 cobyric acid synthase cbiP
YP_001321398.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mla:Mlab_1378 hypothetical protein
YP_001321399.1	PFAM: transport system permease protein; KEGG: ctc:CTC00784 iron(III) dicitrate transport system permease protein fecD
YP_001321400.1	PFAM: periplasmic binding protein; KEGG: sth:STH1929 iron ABC transporter substrate-binding protein
YP_001321401.1	PFAM: Phosphoglycerate mutase; KEGG: cth:Cthe_3153 phosphoglycerate mutase
YP_001321402.1	TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cno:NT01CX_2079 cobalamin 5'-phosphate synthase
YP_001321403.1	PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; KEGG: cth:Cthe_0965 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
YP_001321404.1	PFAM: cobalbumin biosynthesis protein; KEGG: cac:CAC1383 adenosyl cobinamide kinase/adenosyl cobinamide phosphate
YP_001321405.1	KEGG: bca:BCE_1868 hypothetical protein
YP_001321406.1	KEGG: cth:Cthe_1061 hypothetical protein
YP_001321407.1	PFAM: VanW family protein; G5 domain protein; KEGG: tte:TTE1768 hypothetical protein
YP_001321408.1	PFAM: cell division protein FtsA; KEGG: ctc:CTC00985 cell division protein FtsA
YP_001321409.1	KEGG: tte:TTE1769 predicted EndoIII-related endonuclease; TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; SMART: iron-sulfur cluster loop
YP_001321410.1	PFAM: protein of unknown function DUF503; KEGG: cth:Cthe_0584 protein of unknown function DUF503
YP_001321411.1	PFAM: acriflavin resistance protein; KEGG: dsy:DSY3359 hypothetical protein
YP_001321412.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dsy:DSY3360 hypothetical protein
YP_001321414.1	TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: oih:OB1538 signal peptidase I
YP_001321415.1	TIGRFAM: 8-amino-7-oxononanoate synthase; pyridoxal phosphate-dependent acyltransferase, putative; PFAM: aminotransferase, class I and II; KEGG: tde:TDE2194 8-amino-7-oxononanoate synthase, putative
YP_001321416.1	KEGG: tte:TTE1771 predicted ATP-dependent protease
YP_001321417.1	PFAM: HEAT domain containing protein; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: ser:SERP1392 iron-sulfur cluster-binding protein, putative
YP_001321418.1	TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: oih:OB1538 signal peptidase I
YP_001321419.1	PFAM: endodeoxyribonuclease RusA; KEGG: cno:NT01CX_0479 hypothetical protein
YP_001321420.1	PFAM: protein of unknown function DUF456; KEGG: xoo:XOO1509 hypothetical protein
YP_001321421.1	PFAM: regulatory protein, ArsR; KEGG: cpr:CPR_1606 transcriptional regulatory protein, putative
YP_001321422.1	PFAM: nitroreductase; KEGG: dsy:DSY1470 hypothetical protein
YP_001321423.1	catalyzes the formation of glutamate from glutamine
YP_001321424.1	PFAM: phosphoribulokinase/uridine kinase; KEGG: cth:Cthe_0332 phosphoribulokinase/uridine kinase
YP_001321425.1	PFAM: CBS domain containing protein; KEGG: cth:Cthe_2352 putative signal-transduction protein with CBS domains
YP_001321426.1	TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: tte:TTE1277 glutamate 5-kinase
YP_001321427.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_001321428.1	TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; KEGG: ctc:CTC01253 putative signal peptidase I
YP_001321429.1	KEGG: bce:BC4676 hypothetical cytosolic protein
YP_001321431.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cno:NT01CX_1005 HAD-superfamily hydrolase, putative
YP_001321432.1	KEGG: cno:NT01CX_1222 hypothetical protein
YP_001321433.1	PFAM: NAD(P)H dehydrogenase (quinone); KEGG: bca:BCE_5095 NAD(P)H dehydrogenase, quinone family
YP_001321434.1	PFAM: manganese containing catalase; KEGG: ctc:CTC00870 spore coat protein
YP_001321435.1	KEGG: tte:TTE1800 spore coat peptide assembly protein cotJB
YP_001321437.1	PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: cno:NT01CX_0653 peptidyl-prolyl cis-trans isomerase
YP_001321438.1	PFAM: GCN5-related N-acetyltransferase; KEGG: bsu:BG13543 hypothetical protein
YP_001321439.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_001321440.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lin:lin2353 similar to amino acid ABC transporter (ATP-binding protein)
YP_001321441.1	TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_3743 amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine
YP_001321442.1	PFAM: extracellular solute-binding protein, family 3; KEGG: bat:BAS0353 amino acid ABC transporter, solute binding protein
YP_001321443.1	PFAM: NLP/P60 protein; protein of unknown function DUF1058; SH3, type 3 domain protein; SMART: SH3 domain protein; KEGG: tte:TTE0880 cell wall-associated hydrolase (invasion-associated proteins)
YP_001321445.1	KEGG: cac:CAC0367 arginine degradation protein (gene RocB)
YP_001321447.1	KEGG: tte:TTE0912 hypothetical protein
YP_001321448.1	PFAM: S-layer domain protein; protein of unknown function DUF187; KEGG: cth:Cthe_0054 protein of unknown function DUF187
YP_001321450.1	TIGRFAM: RNA methyltransferase, TrmA family; PFAM: putative RNA methylase; deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: ctc:CTC01941 tRNA (uracil-5-) -methyltransferase
YP_001321451.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: bce:BC4704 ribosomal small subunit pseudouridine synthase A
YP_001321452.1	KEGG: cth:Cthe_0084 hypothetical protein
YP_001321453.1	TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cno:NT01CX_1384 CDP-diacylglycerol--serine O-phosphatidyltransferase
YP_001321454.1	TIGRFAM: ketose-bisphosphate aldolase; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase, class-II; KEGG: cth:Cthe_0349 fructose-1,6-bisphosphate aldolase, class II
YP_001321455.1	KEGG: uur:UU520 hypothetical protein
YP_001321456.1	PFAM: metallophosphoesterase; KEGG: cno:NT01CX_1367 predicted phoshohydrolase
YP_001321457.1	PFAM: RelA/SpoT domain protein; KEGG: ctc:CTC00336 GTP pyrophosphokinase
YP_001321458.1	TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; KEGG: chy:CHY_0280 glyceraldehyde-3-phosphate dehydrogenase, type I
YP_001321459.1	Contains selenocysteine; TIGRFAM: conserved hypothetical selenoprotein; KEGG: mfa:Mfla_0384 SelT/SelW/SelH selenoprotein
YP_001321460.1	KEGG: cno:NT01CX_1363 hypothetical protein
YP_001321461.1	TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_0370 conserved hypothetical radical SAM protein
YP_001321462.1	PFAM: major facilitator superfamily MFS_1; KEGG: dsy:DSY0432 hypothetical protein
YP_001321463.1	KEGG: cth:Cthe_3089 UspA
YP_001321464.1	PFAM: S-layer domain protein; glycoside hydrolase, family 18; SMART: chitinase II; KEGG: swo:Swol_0141 hypothetical protein
YP_001321465.1	PFAM: Peptidoglycan-binding LysM; KEGG: mta:Moth_1271 peptidoglycan-binding LysM
YP_001321466.1	Contains selenocysteine; TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; KEGG: gvi:glr2368 hypothetical protein
YP_001321467.1	PFAM: protein of unknown function DUF378; KEGG: sth:STH346 hypothetical protein
YP_001321469.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: cac:CAC0365 phosphoglycerate dehydrogenase
YP_001321470.1	KEGG: cno:NT01CX_0854 hypothetical protein
YP_001321471.1	TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: cth:Cthe_0328 peptide chain release factor 3
YP_001321472.1	KEGG: tte:TTE0937 hypothetical protein
YP_001321473.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: tte:TTE2399 permeases of the drug/metabolite transporter (DMT) superfamily
YP_001321474.1	KEGG: cac:CAC3417 flavodoxin
YP_001321475.1	PFAM: nitroreductase; KEGG: cth:Cthe_0579 nitroreductase
YP_001321476.1	this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress
YP_001321477.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; GAF domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: syf:Synpcc7942_2096 diguanylate cyclase (GGDEF domain)
YP_001321478.1	KEGG: tte:TTE0519 hypothetical protein
YP_001321479.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase, HD region; KEGG: tte:TTE0518 HD-GYP domain
YP_001321480.1	KEGG: tte:TTE0517 hypothetical protein
YP_001321481.1	PFAM: GCN5-related N-acetyltransferase; Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: pto:PTO0564 pyridoxal-phosphate dependent enzyme
YP_001321482.1	KEGG: cth:Cthe_2170 hypothetical protein
YP_001321483.1	PFAM: Na+/H+ antiporter NhaC; KEGG: btk:BT9727_0310 Na+/H+ antiporter
YP_001321484.1	KEGG: swo:Swol_1911 hypothetical protein
YP_001321485.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: cac:CAC0391 cystathionine beta-lyase
YP_001321486.1	PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: cth:Cthe_2799 cystathionine gamma-synthase
YP_001321487.1	catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis
YP_001321488.1	TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; KEGG: bat:BAS0232 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase
YP_001321489.1	TIGRFAM: D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; KEGG: bca:BCE_0265 D-alanylalanine synthetase
YP_001321490.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: cpr:CPR_0449 sensor histidine kinase
YP_001321491.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpf:CPF_0459 DNA-binding response regulator
YP_001321492.1	PFAM: protein of unknown function DUF833; KEGG: swo:Swol_2245 hypothetical protein
YP_001321493.1	PFAM: copper amine oxidase domain protein; KEGG: swo:Swol_1696 hypothetical protein
YP_001321494.1	PFAM: regulatory protein, LuxR; response regulator receiver; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: bcl:ABC2125 two-component response regulator
YP_001321495.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: bcl:ABC2124 two-component sensor histidine kinase
YP_001321496.1	PFAM: ABC-2 type transporter; KEGG: bcl:ABC2123 multidrug ABC transporter permease
YP_001321497.1	PFAM: ABC-2 type transporter; KEGG: bcl:ABC2122 multidrug ABC transporter permease
YP_001321498.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcl:ABC2121 multidrug ABC transporter ATP-binding protein
YP_001321499.1	TIGRFAM: C_GCAxxG_C_C family protein; KEGG: efa:EF0664 hypothetical protein
YP_001321500.1	PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: efa:EF0645 exfoliative toxin A, putative
YP_001321501.1	PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: ctc:CTC01876 transcriptional regulatory protein
YP_001321502.1	PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: ctc:CTC01875 flavodoxin
YP_001321503.1	KEGG: sth:STH1728 hypothetical protein, glutamine-rich
YP_001321504.1	PFAM: Chloride channel, core; KEGG: bha:BH0663 hypothetical protein
YP_001321505.1	PFAM: protein of unknown function DUF421; KEGG: dsy:DSY3481 hypothetical protein
YP_001321506.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: maq:Maqu_0352 TRAP dicarboxylate transporter, DctM subunit
YP_001321507.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: sil:SPO1146 TRAP dicarboxylate transporter, DctQ subunit
YP_001321508.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: hha:Hhal_0448 TRAP dicarboxylate transporter-DctP subunit
YP_001321509.1	PFAM: PHP C-terminal domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cno:NT01CX_1282 PHP family protein
YP_001321513.1	PFAM: nitroreductase; KEGG: dsy:DSY1470 hypothetical protein
YP_001321514.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: bsu:BG13855 similar to thiol peroxidase
YP_001321515.1	TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tte:TTE0596 metal-dependent amidase/aminoacylase/carboxypeptidase
YP_001321516.1	PFAM: conserved hypothetical protein 698; KEGG: ctc:CTC01844 membrane spanning protein, similar to vegetatible incompatibility protein HET-E-1
YP_001321517.1	KEGG: pin:Ping_1432 hypothetical protein
YP_001321518.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: mmp:MMP0210 hypothetical protein
YP_001321520.1	KEGG: swo:Swol_1797 hypothetical protein
YP_001321521.1	PFAM: N-formylglutamate amidohydrolase; KEGG: sil:SPOA0448 N-formylglutamate amidohydrolase
YP_001321522.1	PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; RimK domain protein ATP-grasp; KEGG: bja:bll8229 hypothetical protein
YP_001321523.1	TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: bja:bll8231 putative gamma-glutamyltranspeptidase
YP_001321524.1	KEGG: cac:CAC0769 hypothetical protein
YP_001321525.1	PFAM: FAD linked oxidase domain protein; KEGG: tte:TTE0224 FAD/FMN-containing dehydrogenases
YP_001321526.1	PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; KEGG: tte:TTE0547 Electron transfer flavoprotein alpha-subunit
YP_001321527.1	PFAM: Electron transfer flavoprotein, alpha/beta-subunit-like; KEGG: sfu:Sfum_1372 electron transfer flavoprotein beta-subunit
YP_001321528.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: mta:Moth_2304 GntR-like
YP_001321529.1	TIGRFAM: L-lactate transport; PFAM: L-lactate permease; KEGG: dvl:Dvul_0784 L-lactate transport
YP_001321530.1	PFAM: protein of unknown function DUF1271; SMART: zinc finger, CDGSH-type domain protein; KEGG: mbu:Mbur_2272 protein of unknown function DUF1271
YP_001321531.1	TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein, family 3; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: dsy:DSY1176 hypothetical protein
YP_001321532.1	PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC00924 methyl-accepting chemotaxis protein
YP_001321533.1	PFAM: helicase domain protein; DbpA, RNA-binding domain protein; type III restriction protein, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bat:BAS5307 ATP-dependent RNA helicase, DEAD/DEAH box family
YP_001321534.1	phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway
YP_001321535.1	isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway
YP_001321536.1	catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate
YP_001321537.1	PFAM: chemotaxis sensory transducer; KEGG: cac:CAC0432 methyl-accepting chemotaxis protein
YP_001321538.1	PFAM: CheW domain protein; KEGG: chy:CHY_0966 chemotaxis protein CheW
YP_001321539.1	KEGG: lsl:LSL_0479 protein EcsB
YP_001321540.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB1155 ABC transporter ATP-binding protein
YP_001321541.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: dsy:DSY2631 carbon monoxide dehydrogenase maturation factor
YP_001321542.1	TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; KEGG: chy:CHY_1824 carbon-monoxide dehydrogenase, catalytic subunit
YP_001321543.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: chy:CHY_1825 iron-sulfur cluster-binding protein CooF
YP_001321544.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; 4-vinyl reductase, 4VR; SMART: AAA ATPase; KEGG: tte:TTE1710 NtrC family transcriptional regulator, ATPase domain
YP_001321545.1	TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; Oligopeptidase F; KEGG: bha:BH2856 peptidase
YP_001321546.1	PFAM: protein of unknown function DUF1653; KEGG: pat:Patl_0461 protein of unknown function DUF1653
YP_001321547.1	SMART: helicase c2; KEGG: sth:STH2740 ATP-dependent helicase
YP_001321548.1	PFAM: major facilitator superfamily MFS_1; KEGG: btk:BT9727_2273 permease; possible macrolide-efflux protein
YP_001321549.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpr:CPR_0797 ferrichrome transport ATP-binding protein FhuC
YP_001321550.1	PFAM: transport system permease protein; KEGG: cpe:CPE0812 probable ferrichrome ABC transporter
YP_001321551.1	PFAM: transport system permease protein; KEGG: cpr:CPR_0795 iron compound ABC transporter, permease protein
YP_001321552.1	PFAM: periplasmic binding protein; KEGG: cpf:CPF_0807 iron compound ABC transporter, iron compound-binding protein
YP_001321553.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: gfo:orf1663 AraC family transcriptional regulator protein
YP_001321554.1	TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: aba:Acid345_3638 methyltransferase
YP_001321555.1	PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC3397 membrane associated methyl-accepting chemotaxis protein (with HamP domain)
YP_001321556.1	Contains selenocysteine; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sat:SYN_03642 thioredoxin peroxidase
YP_001321557.1	PFAM: helicase domain protein; SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: tfu:Tfu_0761 preprotein translocase SecA subunit
YP_001321559.1	PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: cno:NT01CX_0803 major facilitator superfamily protein
YP_001321560.1	PFAM: Cupin 2, conserved barrel domain protein; KEGG: cac:CAC3376 possible pectin degradation protein (sugar phosphate isomerase family)
YP_001321561.1	PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: mta:Moth_0429 mannitol dehydrogenase
YP_001321562.1	catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate
YP_001321564.1	TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: msm:MSMEG_6845 trap dicarboxylate transporter, DctM subunit
YP_001321565.1	PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: vch:VC1778 hypothetical protein
YP_001321566.1	PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: msm:MSMEG_6844 TRAP-T family protein transporter, dCTP
YP_001321567.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bld:BLi01354 hypothetical protein
YP_001321568.1	KEGG: nha:Nham_2838 zinc finger, SWIM-type
YP_001321569.1	PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: nha:Nham_2839 SNF2-related
YP_001321571.1	PFAM: protein of unknown function DUF1568; KEGG: swo:Swol_2198 transposase
YP_001321572.1	TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: mta:Moth_2025 xylulokinase
YP_001321573.1	PFAM: ROK family protein; KEGG: cac:CAC3673 XylR transcriptional regulator
YP_001321574.1	TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tma:TM1667 xylose isomerase
YP_001321575.1	PFAM: inner-membrane translocator; KEGG: gka:GK1908 L-arabinose ABC transporter (permease)
YP_001321576.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK1909 ABC transporter (ATP-binding protein)
YP_001321577.1	KEGG: rle:RL3617 putative solute-binding component of ABC transporter
YP_001321578.1	PFAM: Aldose 1-epimerase; KEGG: rba:RB6537 aldose 1-epimerase
YP_001321579.1	KEGG: swo:Swol_0136 transposase and inactivated derivatives-like protein
YP_001321580.1	PFAM: protein of unknown function DUF291; Ig family protein; Ig domain protein; copper amine oxidase domain protein; KEGG: dsy:DSY0535 hypothetical protein
YP_001321581.1	PFAM: response regulator receiver; KEGG: dsy:DSY0459 hypothetical protein
YP_001321582.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase internal region; KEGG: tte:TTE0871 Regulator of cell autolysis
YP_001321583.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dsy:DSY3766 hypothetical protein
YP_001321584.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY3478 hypothetical protein
YP_001321585.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY3479 hypothetical protein
YP_001321586.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ctc:CTC01411 transcriptional regulatory protein
YP_001321588.1	KEGG: dsy:DSY4223 hypothetical protein
YP_001321589.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: dsy:DSY1999 hypothetical protein
YP_001321590.1	KEGG: cac:CAC3492 hypothetical protein
YP_001321591.1	KEGG: bth:BT_1587 hypothetical protein
YP_001321592.1	KEGG: bth:BT_4495 hypothetical protein
YP_001321593.1	TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; KEGG: bcz:pE33L466_0272 transposase
YP_001321594.1	PFAM: transposase IS200-family protein; KEGG: ctc:CTC00621 transposase
YP_001321595.1	PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; KEGG: cac:CAC3494 transcription regulator, YOBV B.subtilis homolog
YP_001321596.1	PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase
YP_001321597.1	PFAM: protein of unknown function DUF1568; KEGG: swo:Swol_1055 transposase
YP_001321598.1	PFAM: microcompartments protein; KEGG: ssa:SSA_0525 microcompartment protein, putative
YP_001321599.1	PFAM: Propanediol utilization protein; KEGG: ctc:CTC01440 hypothetical protein
YP_001321600.1	TIGRFAM: acetaldehyde dehydrogenase (acetylating); PFAM: aldehyde dehydrogenase; KEGG: ctc:CTC01441 acetaldehyde dehydrogenase (acetylating)
YP_001321601.1	PFAM: microcompartments protein; KEGG: ctc:CTC01442 carbon dioxide concentrating mechanism protein CcmK homolog
YP_001321602.1	KEGG: dsy:DSY4995 hypothetical protein
YP_001321603.1	PFAM: microcompartments protein; KEGG: dsy:DSY4996 hypothetical protein
YP_001321604.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: dsy:DSY4997 hypothetical protein
YP_001321605.1	PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: dsy:DSY4998 hypothetical protein
YP_001321606.1	PFAM: microcompartments protein; KEGG: dsy:DSY4999 hypothetical protein
YP_001321607.1	TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: ctc:CTC01444 ethanolamine utilization protein eutJ
YP_001321608.1	KEGG: ctc:CTC01445 hypothetical protein
YP_001321609.1	KEGG: dsy:DSY5002 hypothetical protein
YP_001321610.1	PFAM: microcompartments protein; KEGG: ctc:CTC01447 ethanolamine utilization protein eutS
YP_001321611.1	TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Radical SAM domain protein; KEGG: ctc:CTC01448 benzylsuccinate synthase activating enzyme
YP_001321612.1	PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: ctc:CTC01449 formate acetyltransferase 2
YP_001321613.1	PFAM: microcompartments protein; KEGG: dde:Dde_3284 carbon dioxide concentrating mechanism protein (PduA related)-like
YP_001321614.1	PFAM: microcompartments protein; KEGG: dde:Dde_3284 carbon dioxide concentrating mechanism protein (PduA related)-like
YP_001321615.1	KEGG: dde:Dde_3289 hypothetical protein
YP_001321616.1	KEGG: ctc:CTC01451 membrane spanning protein
YP_001321617.1	PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: cpr:CPR_0594 choline/ethanolamine kinase family protein
YP_001321618.1	PFAM: iron-containing alcohol dehydrogenase; KEGG: cno:NT01CX_0486 alcetaldehyde dehydrogenase or NADPH-dependent butanol dehydrogenase
YP_001321619.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase internal region; KEGG: cno:NT01CX_0495 sensor histidine kinase, putative
YP_001321620.1	PFAM: helix-turn-helix- domain containing protein, AraC type; response regulator receiver; KEGG: cno:NT01CX_0496 two-component response regulator
YP_001321622.1	PFAM: helix-turn-helix- domain containing protein, AraC type; transcription activator, effector binding; KEGG: bcz:BCZK2776 transcriptional regulator, AraC family
YP_001321623.1	PFAM: ABC transporter related; KEGG: vch:VC0394 excinuclease ABC, subunit A
YP_001321624.1	KEGG: dsy:DSY0628 hypothetical protein
YP_001321625.1	PFAM: regulatory protein, TetR; KEGG: dsy:DSY4740 hypothetical protein
YP_001321626.1	PFAM: beta-lactamase domain protein; KEGG: cth:Cthe_2754 beta-lactamase-like protein
YP_001321628.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein
YP_001321629.1	PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22)
YP_001321630.1	PFAM: protein of unknown function UPF0016; KEGG: sat:SYN_01349 hypothetical membrane protein
YP_001321631.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FMN-binding domain protein; KEGG: dsy:DSY3697 putative fumarate reductase flavoprotein subunit
YP_001321632.1	PFAM: regulatory protein, TetR; KEGG: cno:NT01CX_0025 transcription regulator (TetR/AcrR family)
YP_001321634.1	PFAM: regulatory protein, TetR; KEGG: sco:SCO1094 TetR-family regulatory protein
YP_001321635.1	PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dsy:DSY3139 putative fumarate reductase flavoprotein subunit
YP_001321637.1	KEGG: pfa:PFF0660w hypothetical protein
YP_001321639.1	PFAM: ABC transporter related; KEGG: ctc:CTC00915 transporter
YP_001321640.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: cno:NT01CX_1433 subtilin biosynthesis sensor protein SpaK
YP_001321641.1	PFAM: regulatory protein, LysR; KEGG: lme:LEUM_1238 fhu operon transcription regulator
YP_001321642.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: fnu:FN0667 Na+ driven multidrug efflux pump
YP_001321643.1	PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: mta:Moth_1487 methyl-accepting chemotaxis sensory transducer
YP_001321645.1	KEGG: swo:Swol_0148 transposase and inactivated derivatives-like protein
YP_001321646.1	KEGG: fnu:FN0872 hypothetical protein
YP_001321647.1	PFAM: major facilitator superfamily MFS_1; KEGG: lin:lin2274 hypothetical protein
YP_001321648.1	PFAM: amidohydrolase; KEGG: mta:Moth_0462 amidohydrolase
YP_001321649.1	KEGG: dsy:DSY3881 hypothetical protein
YP_001321650.1	TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: oih:OB3327 hypothetical conserved protein
YP_001321651.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pin:Ping_3537 ABC transporter substrate binding inner membrane protein
YP_001321652.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_2430 hypothetical protein
YP_001321653.1	KEGG: swo:Swol_2198 transposase
YP_001321654.1	KEGG: sat:SYN_03180 transposase and inactivated derivatives
YP_001321656.1	KEGG: llm:llmg_2206 hypothetical protein predicted by Glimmer/Critica
YP_001321657.1	PFAM: peptidase M56, BlaR1; KEGG: dsy:DSY1015 hypothetical protein
YP_001321658.1	PFAM: Penicillinase repressor; KEGG: cth:Cthe_3145 transcriptional repressor, CopY family
YP_001321659.1	PFAM: ABC-2 type transporter; KEGG: gka:GK0909 ABC transporter (permease)
YP_001321660.1	TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK0910 ABC transporter (ATP-binding protein)
YP_001321663.1	KEGG: cth:Cthe_0819 ABC transporter related protein
YP_001321664.1	PFAM: regulatory protein, MarR; KEGG: llm:llmg_1017 transcriptional regulator, MarR family
YP_001321666.1	PFAM: IstB domain protein ATP-binding protein; KEGG: llm:llmg_2109 putative transposase helper protein for IS712H
YP_001321667.1	PFAM: transcriptional regulator PadR family protein; KEGG: cac:CAC0530 hypothetical protein
YP_001321668.1	PFAM: protein of unknown function DUF303, acetylesterase putative; KEGG: cac:CAC0529 acetylxylan esterase related enzyme
YP_001321669.1	KEGG: pol:Bpro_5089 transposase, IS4
YP_001321670.1	PFAM: transcription activator, effector binding; KEGG: mlo:mll8212 transcriptional regulator
YP_001321671.1	PFAM: transcriptional regulator PadR family protein; KEGG: dsy:DSY0556 hypothetical protein
YP_001321672.1	KEGG: sus:Acid_3161 palmitoyl-CoA hydrolase
YP_001321673.1	PFAM: transposase, IS4 family protein; KEGG: wol:WD0563 transposase, IS4 family
YP_001321674.1	PFAM: BAAT/Acyl-CoA thioester hydrolase-like; KEGG: cac:CAC3407 acyl-CoA thioesterase 1
YP_001321676.1	KEGG: dsy:DSY0910 hypothetical protein
YP_001321677.1	SMART: helix-turn-helix- domain containing protein, AraC type; KEGG: dsy:DSY0909 hypothetical protein
YP_001321678.1	KEGG: dsy:DSY1145 hypothetical protein
YP_001321683.1	PFAM: zinc/iron permease; KEGG: oih:OB2427 zinc transporter, ZIP family
YP_001321684.1	PFAM: Haem peroxidase; KEGG: bha:BH0906 catalase
YP_001321685.1	SMART: regulatory protein, MerR; KEGG: dsy:DSY3460 hypothetical protein
YP_001321686.1	PFAM: ABC-2 type transporter; KEGG: sma:SAV6712 hypothetical protein
YP_001321687.1	TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV6711 putative ABC transporter ATP-binding protein
YP_001321688.1	KEGG: mxa:MXAN_1647 hypothetical protein
YP_001321689.1	KEGG: btk:BT9727_1620 hypothetical protein
YP_001321690.1	KEGG: dsy:DSY4213 hypothetical protein
YP_001321691.1	PFAM: regulatory protein GntR, HTH; KEGG: oih:OB0429 transcriptional regulator
YP_001321692.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY4854 hypothetical protein
YP_001321693.1	KEGG: dsy:DSY4855 hypothetical protein
YP_001321694.1	KEGG: chu:CHU_2284 membrane protein
YP_001321696.1	KEGG: cpf:CPF_0333 hypothetical protein
YP_001321697.1	KEGG: cpf:CPF_0332 hypothetical protein
YP_001321698.1	KEGG: lwe:lwe0773 AAA - ATPase, putative
YP_001321699.1	PFAM: conserved hypothetical protein 1655; KEGG: bld:BLi04148 YxeA
YP_001321700.1	PFAM: protein of unknown function DUF214; KEGG: bld:BLi04210 similar to ABC transporter (permease); RBL02069
YP_001321701.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB0833 ABC transporter ATP-binding protein
YP_001321702.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: bha:BH3912 two-component sensor histidine kinase
YP_001321703.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: oih:OB0831 two-component response regulator
YP_001321704.1	PFAM: protein of unknown function DUF1232; KEGG: rme:Rmet_4662 protein of unknown function DUF1275
YP_001321705.1	KEGG: bcl:ABC3146 hypothetical protein
YP_001321706.1	KEGG: bcl:ABC1390 transcriptional regulator
YP_001321708.1	PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: cch:Cag_1363 serine/threonine protein kinase
YP_001321711.1	KEGG: stl:stu0103 hypothetical protein
YP_001321712.1	PFAM: protein of unknown function DUF262; KEGG: cpr:CPR_0892 hypothetical protein
YP_001321714.1	PFAM: Relaxase/mobilization nuclease family protein; KEGG: spi:MGAS10750_Spy1708 relaxase
YP_001321715.1	PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22)
YP_001321716.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein
YP_001321718.1	KEGG: spj:MGAS2096_Spy1123 hypothetical protein
YP_001321719.1	PFAM: SMC domain protein; KEGG: fnu:FN0522 exonuclease SBCC
YP_001321722.1	KEGG: spi:MGAS10750_Spy1695 hypothetical protein
YP_001321724.1	PFAM: peptidase M23B; KEGG: efa:EF2318 peptidase, M23/M37 family
YP_001321725.1	KEGG: mmu:677347 hypothetical protein LOC677347
YP_001321726.1	KEGG: efa:EF2321 hypothetical protein
YP_001321727.1	KEGG: efa:EF2324 hypothetical protein
YP_001321730.1	KEGG: hch:HCH_05640 hypothetical protein
YP_001321732.1	KEGG: efa:EF2329 hypothetical protein
YP_001321733.1	PFAM: replication initiator A domain protein; KEGG: efa:EF2334 hypothetical protein
YP_001321734.1	PFAM: ParB domain protein nuclease; KEGG: ctc:CTC01936 chromosome partitioning parB family protein
YP_001321735.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: ctc:CTC01937 sporulation initiation inhibitor soj family protein
YP_001321737.1	TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: cth:Cthe_1111 bile acid:sodium symporter
YP_001321738.1	TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: gka:GK0585 cadmium-transporting ATPase
YP_001321740.1	PFAM: regulatory protein, ArsR; KEGG: cth:Cthe_1112 transcriptional regulator, ArsR family
YP_001321741.1	KEGG: tte:TTE2462 hypothetical protein
YP_001321745.1	SMART: helix-turn-helix domain protein; KEGG: cth:Cthe_1750 hypothetical protein
YP_001321746.1	PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: bca:BCE_0419 DNA recombinase, putative
YP_001321747.1	PFAM: Recombinase; KEGG: bca:BCE_0418 hypothetical protein
YP_001321748.1	PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: bca:BCE_0417 DNA recombinase, putative
YP_001321749.1	KEGG: bca:BCE_0416 hypothetical protein
YP_001321750.1	PFAM: DNA-directed DNA polymerase; KEGG: bca:BCE_0377 DNA polymerase I
YP_001321751.1	PFAM: NUMOD4 domain protein; KEGG: sav:SAV0865 hypothetical protein
YP_001321752.1	KEGG: bca:BCE_0376 hypothetical protein
YP_001321753.1	KEGG: bca:BCE_0375 hypothetical protein
YP_001321754.1	KEGG: bca:BCE_0374 rRNA biogenesis protein rrp5, putative
YP_001321755.1	KEGG: bca:BCE_0373 hypothetical protein
YP_001321756.1	PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; Sporulation domain protein; KEGG: bca:BCE_0415 N-acetylmuramoyl-L-alanine amidase domain protein
YP_001321757.1	TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin, toxin secretion/phage lysis; KEGG: cth:Cthe_1612 toxin secretion/phage lysis holin
YP_001321760.1	KEGG: cth:Cthe_1618 hypothetical protein
YP_001321761.1	KEGG: cth:Cthe_1621 hypothetical protein
YP_001321762.1	KEGG: cth:Cthe_1622 hypothetical protein
YP_001321763.1	TIGRFAM: phage major tail protein, phi13 family; KEGG: bca:BCE_0406 phage major tail protein, phi13 family subfamily
YP_001321764.1	KEGG: cth:Cthe_1624 hypothetical protein
YP_001321765.1	TIGRFAM: phage protein, HK97 gp10 family; KEGG: cth:Cthe_1625 phage protein, HK97 GP10 family
YP_001321766.1	TIGRFAM: phage head-tail adaptor, putative; KEGG: bca:BCE_0403 phage head-tail adaptor, putative
YP_001321767.1	TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: cth:Cthe_1627 uncharacterized phage protein
YP_001321768.1	KEGG: bca:BCE_0401 hypothetical protein
YP_001321769.1	TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: bca:BCE_0400 phage major capsid protein, HK97 family
YP_001321770.1	PFAM: peptidase S14, ClpP; KEGG: cth:Cthe_1629 peptidase S14, ClpP
YP_001321771.1	TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: det:DET1087 portal protein, HK97 family, putative
YP_001321774.1	PFAM: phage Terminase; KEGG: bca:BCE_0397 phage terminase, large subunit, putative
YP_001321776.1	KEGG: pac:PPA1584 hypothetical protein
YP_001321777.1	KEGG: cth:Cthe_1725 hypothetical protein
YP_001321778.1	KEGG: det:DET1090 hypothetical protein
YP_001321779.1	KEGG: det:DET0065 virulence-related protein
YP_001321780.1	PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; KEGG: bca:BCE_0392 DNA methylase, family protein
YP_001321781.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_001321782.1	KEGG: bca:BCE_0390 hypothetical protein
YP_001321783.1	PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: det:DET0069 HNH endonuclease domain protein
YP_001321784.1	KEGG: lin:lin2582 hypothetical protein
YP_001321785.1	KEGG: det:DET0070 hypothetical protein
YP_001321786.1	KEGG: bca:BCE_0387 hypothetical protein
YP_001321787.1	KEGG: bca:BCE_0386 phage-associated helicase
YP_001321788.1	PFAM: HNH endonuclease; KEGG: cth:Cthe_1703 HNH endonuclease
YP_001321789.1	PFAM: VRR_NUC domain protein; KEGG: bca:BCE_0385 phage protein, putative
YP_001321790.1	PFAM: virulence-associated E family protein; KEGG: det:DET1098 virulence-associated protein E, putative
YP_001321791.1	KEGG: bca:BCE_0383 hypothetical protein
YP_001321793.1	TIGRFAM: Phage regulatory protein, Rha family; KEGG: pmu:PM1774 rha protein, phage phi-80
YP_001321794.1	KEGG: bca:BCE_0372 hypothetical protein
YP_001321795.1	KEGG: cth:Cthe_1654 hypothetical protein
YP_001321796.1	PFAM: protein of unknown function DUF45; KEGG: tde:TDE0365 hypothetical protein
YP_001321797.1	TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; KEGG: pcr:Pcryo_0948 type I site-specific deoxyribonuclease, HsdR family
YP_001321798.1	PFAM: restriction modification system DNA specificity domain; KEGG: mma:MM2293 type I restriction-modification system specificity subunit
YP_001321799.1	PFAM: N-6 DNA methylase; KEGG: tde:TDE0369 type I restriction-modification system, M subunit
YP_001321801.1	TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; protein of unknown function Met10; (Uracil-5)-methyltransferase; KEGG: bca:BCE_0363 RNA methyltransferase, TrmA family
YP_001321803.1	PFAM: aldo/keto reductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: chy:CHY_1118 oxidoreductase, aldo/keto reductase family
YP_001321804.1	PFAM: FxsA cytoplasmic membrane protein; KEGG: bha:BH3162 hypothetical protein
YP_001321805.1	PFAM: thioesterase superfamily protein; KEGG: cth:Cthe_1260 4-hydroxybenzoyl-CoA thioesterase
YP_001321806.1	KEGG: cth:Cthe_0431 hypothetical protein
YP_001321807.1	PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: tte:TTE0698 hypothetical protein
YP_001321808.1	TIGRFAM: PAS sensor protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; hydrogenase large subunit domain protein; Fe-S cluster domain protein; KEGG: tte:TTE0697 ferredoxin 2
YP_001321809.1	TIGRFAM: pyruvate kinase; PFAM: PEP-utilising protein, mobile region; Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta; KEGG: tte:TTE1815 pyruvate kinase
YP_001321810.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_001321811.1	KEGG: cth:Cthe_1262 hypothetical protein
YP_001321812.1	catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.
YP_001321813.1	PFAM: transcriptional activator domain; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ctc:CTC02319 serine/threonine kinase, putative regulatory protein
YP_001321814.1	TIGRFAM: glutamate formiminotransferase; PFAM: Formiminotransferase domain protein; Formiminotransferase-like; KEGG: pgi:PG0329 formiminotransferase-cyclodeaminase-related protein
YP_001321815.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_001321816.1	KEGG: bce:BC0021 deoxyguanosine kinase
YP_001321817.1	PFAM: deoxynucleoside kinase; KEGG: oih:OB0015 deoxypurine kinase subunit
YP_001321821.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein
YP_001321822.1	PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22)
YP_001321823.1	PFAM: copper amine oxidase domain protein
YP_001321824.1	SMART: Accessory gene regulator B; KEGG: dsy:DSY2528 hypothetical protein
YP_001321825.1	KEGG: art:Arth_4398 hypothetical protein
YP_001321826.1	PFAM: ATP-binding region, ATPase domain protein; KEGG: swo:Swol_2401 signal transduction histidine kinase regulating citrate/malate metabolism
YP_001321827.1	PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: tte:TTE0561 response regulators of cell autolysis
YP_001321828.1	PFAM: protein of unknown function DUF199; KEGG: cac:CAC0513 uncharacterized conserved protein, similar to B.subtilis YvcL
YP_001321829.1	PFAM: protein of unknown function DUF1540
YP_001321830.1	PFAM: NUDIX hydrolase; KEGG: aae:aq_158 AP4A hydrolase
YP_001321831.1	PFAM: protein of unknown function UPF0052 and CofD; KEGG: cno:NT01CX_1285 hypothetical UPF0052 protein
YP_001321832.1	PFAM: uncharacterised P-loop ATPase protein UPF0042; KEGG: ctc:CTC02495 hypothetical protein
YP_001321833.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_001321834.1	PFAM: extracellular solute-binding protein, family 1; KEGG: tte:TTE1917 sugar-binding periplasmic proteins/domains
YP_001321835.1	KEGG: chy:CHY_0804 MOSC domain protein
YP_001321836.1	TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY3488 hypothetical protein
YP_001321837.1	PFAM: Rubrerythrin; KEGG: tko:TK1056 rubrerythrin-related protein
YP_001321838.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: ppd:Ppro_3520 formate dehydrogenase, alpha subunit
YP_001321839.1	PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase Fe4S4 region; KEGG: ppd:Ppro_3520 formate dehydrogenase, alpha subunit
YP_001321840.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: cth:Cthe_0341 NADH dehydrogenase (quinone)
YP_001321841.1	KEGG: cth:Cthe_0340 ferredoxin
YP_001321842.1	PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: cth:Cthe_0338 NADH-quinone oxidoreductase, E subunit
YP_001321843.1	TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Miro domain protein; KEGG: swo:Swol_0318 small GTP-binding protein domain
YP_001321844.1	PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tte:TTE1073 Biotin synthase and related enzymes
YP_001321845.1	in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain
YP_001321846.1	KEGG: swo:Swol_1023 hypothetical protein
YP_001321847.1	TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; hydrogenase large subunit domain protein; KEGG: cth:Cthe_0342 hydrogenase, Fe-only
YP_001321848.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: tte:TTE0893 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
YP_001321849.1	KEGG: tte:TTE0892 ferredoxin
YP_001321850.1	PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: cth:Cthe_0338 NADH-quinone oxidoreductase, E subunit
YP_001321851.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; Resolvase helix-turn-helix domain protein; KEGG: ctc:CTC00072 signal-transduction and transcriptional-control protein
YP_001321852.1	PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: fnu:FN1055 cysteine synthase
YP_001321853.1	TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: ctc:CTC01761 dihydroxyacetone kinase
YP_001321854.1	with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase
YP_001321855.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_2498 ABC transporter related
YP_001321856.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tth:TTC0969 branched-chain amino acid transport ATP-binding protein livG
YP_001321857.1	PFAM: inner-membrane translocator; KEGG: sat:SYN_00787 branched-chain amino acid transport system permease protein
YP_001321858.1	PFAM: inner-membrane translocator; KEGG: chy:CHY_2231 high affinity branched-chain amino acid ABC transporter, permease protein
YP_001321859.1	PFAM: Extracellular ligand-binding receptor; KEGG: bba:Bd3385 branched-chain amino acid ABC transporter, amino acid-binding protein
YP_001321860.1	KEGG: tde:TDE2362 hypothetical protein
YP_001321861.1	TIGRFAM: putative glucokinase, ROK family; PFAM: ROK family protein; ATPase, BadF/BadG/BcrA/BcrD type; KEGG: tte:TTE1961 transcriptional regulator
YP_001321862.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_001321863.1	PFAM: PspC domain protein; KEGG: cth:Cthe_1057 phage shock protein C, PspC
YP_001321864.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_001321865.1	KEGG: cth:Cthe_2383 hypothetical protein
YP_001321866.1	TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0311 excinuclease ABC, A subunit
YP_001321867.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_001321868.1	TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; KEGG: tte:TTE1974 periplasmic protease
YP_001321869.1	PFAM: peptidase M23B; KEGG: tte:TTE1975 membrane proteins related to metalloendopeptidase
YP_001321870.1	PFAM: protein of unknown function DUF214; KEGG: tte:TTE1976 cell division protein
YP_001321871.1	TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE1977 predicted ATPase involved in cell division
YP_001321872.1	PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: mta:Moth_2140 5-formyltetrahydrofolate cyclo-ligase
YP_001321873.1	PFAM: peptidase S16, lon domain protein; KEGG: tte:TTE1771 predicted ATP-dependent protease
YP_001321874.1	PFAM: Peptidoglycan-binding LysM; KEGG: cth:Cthe_3005 peptidoglycan-binding LysM
YP_001321875.1	KEGG: cth:Cthe_2182 Ig-like, group 2; related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like protein
YP_001321876.1	KEGG: tte:TTE0116 S-layer homology domain
YP_001321878.1	PFAM: protein of unknown function DUF161; KEGG: tde:TDE2546 hypothetical protein
YP_001321879.1	TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; KEGG: tte:TTE2163 teichoic acid biosynthesis proteins
YP_001321880.1	PFAM: polysaccharide pyruvyl transferase; KEGG: tte:TTE2164 hypothetical protein
YP_001321881.1	KEGG: tte:TTE2165 hypothetical protein
YP_001321882.1	KEGG: cth:Cthe_2700 hypothetical protein
YP_001321883.1	PFAM: PemK family protein; KEGG: tte:TTE2166 growth inhibitor
YP_001321884.1	PFAM: CopG domain protein DNA-binding domain protein; KEGG: tte:TTE2167 predicted transcriptional regulator containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain
YP_001321885.1	TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; KEGG: mmp:MMP1512 alanine racemase
YP_001321886.1	KEGG: tte:TTE2169 hypothetical protein
YP_001321887.1	TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: ctc:CTC02516 4'-phosphopantetheinyl transferase
YP_001321888.1	KEGG: cth:Cthe_2695 hypothetical protein
YP_001321889.1	KEGG: cth:Cthe_1300 hypothetical protein
YP_001321890.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ctc:CTC01337 sodium/proton antiporter ShaA
YP_001321891.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ctc:CTC01337 sodium/proton antiporter ShaA
YP_001321892.1	PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: ctc:CTC01339 sodium/proton antiporter ShaD
YP_001321893.1	PFAM: NADH-ubiquinone oxidoreductase, chain 4L; KEGG: ctc:CTC01340 sodium/proton antiporter
YP_001321894.1	PFAM: Na+/H+ antiporter MnhB subunit-related protein; KEGG: ctc:CTC01341 sodium/proton antiporter
YP_001321895.1	KEGG: tko:TK2084 membrane bound hydrogenase, MbhE subunit
YP_001321896.1	KEGG: hal:VNG0566C putative multicomponent Na+:H+ antiporter subunit B
YP_001321897.1	TIGRFAM: monovalent cation/proton antiporter, MnhG/PhaG subunit; PFAM: Na+/H+ antiporter subunit; KEGG: nph:NP0838A pH adaptation potassium efflux system protein G; sodium/hydrogen antiporter subunit G
YP_001321898.1	PFAM: multiple resistance and pH regulation protein F; KEGG: hwa:HQ1675A pH adaptation potassium efflux system protein F; sodium-potassium/hydrogen antiporter subunit F
YP_001321899.1	PFAM: cation antiporter; KEGG: ctc:CTC01342 sodium/proton antiporter ShaE
YP_001321900.1	KEGG: nph:NP2988A hypothetical protein
YP_001321901.1	KEGG: nph:NP2988A hypothetical protein
YP_001321903.1	KEGG: oih:OB1023 hypothetical protein
YP_001321904.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB1022 ABC transporter ATP-binding protein
YP_001321906.1	PFAM: CBS domain containing protein; KEGG: swo:Swol_1883 CBS domain containing membrane protein
YP_001321907.1	PFAM: SMC domain protein; KEGG: tte:TTE0266 ATPase involved in DNA repair
YP_001321908.1	TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: cno:NT01CX_1250 DNA repair exonuclease, putative
YP_001321909.1	TIGRFAM: Recombination helicase AddA; PFAM: UvrD/REP helicase; KEGG: swo:Swol_1146 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains)
YP_001321911.1	PFAM: S-layer domain protein; KEGG: mta:Moth_2341 hypothetical protein
YP_001321912.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: btl:BALH_2727 ABC transporter, ATP-binding protein
YP_001321913.1	KEGG: btk:BT9727_1600 conserved hypothetical protein, possible permease
YP_001321914.1	KEGG: btk:BT9727_1599 hypothetical protein
YP_001321916.1	TIGRFAM: ATP-dependent nuclease subunit AddB; KEGG: swo:Swol_1142 ATP-dependent nuclease subunit B
YP_001321917.1	KEGG: cac:CAC0475 HD-GYP domain
YP_001321919.1	PFAM: nucleic acid binding, OB-fold, tRNA/helicase-type; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: aba:Acid345_4294 metal dependent phosphohydrolase
YP_001321920.1	PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_1771 rubrerythrin
YP_001321921.1	TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cac:CAC0188 N-acetylglucosamine-6-phosphate deacetylase (gene nagA)
YP_001321922.1	TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: tte:TTE1023 6-phosphogluconolactonase/Glucosamine-6- phosphate isomerase/deaminase
YP_001321923.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_001321924.1	PFAM: YdjC family protein; KEGG: tte:TTE0334 conserved hypothetical protein
YP_001321925.1	PFAM: glycoside hydrolase, family 4; KEGG: tte:TTE0337 Alpha-galactosidases/6-phospho-beta- glucosidases, family 4 of glycosyl hydrolases
YP_001321926.1	PFAM: phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit; KEGG: sha:SH0190 hypothetical protein
YP_001321927.1	TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system, EIIC; KEGG: bcl:ABC3667 PTS system, diacetylchitobiose-specific enzyme II, C component
YP_001321928.1	PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: btl:BALH_2193 PTS system, diacetylchitobiose-specific IIB component
YP_001321929.1	TIGRFAM: glucokinase regulatory-like protein; KEGG: vpa:VP0543 glucokinase regulatory protein-related protein
YP_001321930.1	PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: tte:TTE0211 transcriptional regulator
YP_001321931.1	PFAM: ATPase, BadF/BadG/BcrA/BcrD type; KEGG: sha:SH0193 hypothetical protein
YP_001321932.1	PFAM: phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit; KEGG: tte:TTE0336 Phosphotransferase system cellobiose-specific component IIA
YP_001321933.1	PFAM: glycoside hydrolase, family 4; KEGG: tte:TTE0337 Alpha-galactosidases/6-phospho-beta- glucosidases, family 4 of glycosyl hydrolases
YP_001321934.1	TIGRFAM: PTS system, lactose/cellobiose family IIC subunit; PFAM: phosphotransferase system, EIIC; KEGG: bcz:BCZK4903 PTS system, cellobiose-specific IIC component
YP_001321935.1	PFAM: phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: lmf:LMOf2365_2663 PTS system, beta-glucoside-specific, IIB component
YP_001321936.1	PFAM: sigma-54 factor, interaction domain-containing protein; transcriptional regulator TrmB; PTS system fructose subfamily IIA component; PRD domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: lwe:lwe1738 transcriptional regulator, putative
YP_001321937.1	catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine
YP_001321939.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_001321940.1	involved in the allosteric regulation of aspartate carbamoyltransferase
YP_001321941.1	PFAM: regulatory protein, LuxR; response regulator receiver; Sigma-70, region 4 type 2; KEGG: cac:CAC0240 response regulator (CheY-like recever domain and HTH DNA-binding domain)
YP_001321942.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: cno:NT01CX_1313 histidine kinase-like ATPase
YP_001321943.1	PFAM: ABC-2 type transporter; KEGG: cac:CAC0243 predicted permease
YP_001321944.1	PFAM: ABC-2 type transporter; KEGG: cac:CAC0242 predicted permease
YP_001321945.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1310 ABC-type multidrug transport system, ATP-ase compoment CAC0241
YP_001321946.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_001321947.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits
YP_001321948.1	PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cth:Cthe_0948 oxidoreductase FAD/NAD(P)-binding
YP_001321949.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_001321950.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_001321951.1	TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: cth:Cthe_0951 orotidine 5'-phosphate decarboxylase
YP_001321952.1	TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cth:Cthe_0952 dihydroorotase, multifunctional complex type
YP_001321953.1	KEGG: ctc:CTC01832 hypothetical protein
YP_001321954.1	PFAM: peptidase M55, D-aminopeptidase; KEGG: mta:Moth_1265 peptidase M55, D-aminopeptidase
YP_001321955.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_001321956.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001321957.1	PFAM: major facilitator superfamily MFS_1; KEGG: btl:BALH_2399 permease
YP_001321958.1	PFAM: regulatory protein, MerR; Methyltransferase type 11; KEGG: btl:BALH_2398 possible transcriptional regulator, MerR family
YP_001321959.1	PFAM: DEAD_2 domain protein; SMART: DEXDc2; helicase c2; KEGG: cth:Cthe_0289 DEAD_2
YP_001321960.1	KEGG: ctc:CTC00156 hypothetical protein
YP_001321961.1	KEGG: ctc:CTC00157 hypothetical protein
YP_001321962.1	TIGRFAM: Sporulation stage V, protein AE; PFAM: SpoVA protein; KEGG: bcl:ABC1827 stage V sporulation protein AE
YP_001321963.1	PFAM: Stage V sporulation AD family protein; KEGG: gka:GK0854 stage V sporulation protein SpoVAD
YP_001321964.1	TIGRFAM: Sporulation stage V, protein AC; PFAM: SpoVA protein; KEGG: btl:BALH_4637 stage V sporulation protein AC
YP_001321965.1	PFAM: protein of unknown function DUF421; protein of unknown function DUF1657; KEGG: gka:GK0857 hypothetical protein
YP_001321966.1	PFAM: protein of unknown function DUF1657; KEGG: oih:OB1383 hypothetical protein
YP_001321967.1	catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate
YP_001321968.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: tte:TTE0539 phosphoglycerate dehydrogenase and related dehydrogenase
YP_001321969.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cac:CAC0847 probable cation efflux pump (multidrug resistance protein)
YP_001321970.1	PFAM: protein of unknown function DUF124; KEGG: chy:CHY_2133 conserved hypothetical protein TIGR00266
YP_001321971.1	PFAM: thiamine monophosphate synthase; KEGG: cno:NT01CX_1504 thiamine-phosphate pyrophosphorylase, putative
YP_001321972.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_001321973.1	TIGRFAM: thiazole biosynthesis protein ThiH; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; KEGG: cth:Cthe_0599 thiazole biosynthesis protein ThiH
YP_001321974.1	PFAM: thiazole biosynthesis family protein; KEGG: mta:Moth_1663 thiazole biosynthesis
YP_001321975.1	catalyzes the adenylation of ThiS which is involved in the formation of 5-methyl-4-(beta-hydroxyethyl)thiazole phosphate
YP_001321976.1	TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: cno:NT01CX_1502 thiamine biosynthesis protein ThiS
YP_001321977.1	KEGG: dsy:DSY0932 hypothetical protein
YP_001321978.1	KEGG: pin:Ping_2866 hypothetical protein
YP_001321979.1	KEGG: eca:ECA1285 hypothetical protein
YP_001321980.1	PFAM: protein of unknown function DUF1446; KEGG: rru:Rru_A1474 protein of unknown function DUF1446
YP_001321981.1	TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpc:RPC_0826 citrate transporter
YP_001321982.1	TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: PAS domain containing protein; AAA ATPase; KEGG: bcl:ABC0453 transcriptional regulator
YP_001321983.1	TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; KEGG: tte:TTE0721 Acyl-CoA:acetate CoA transferase beta subunit
YP_001321984.1	TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; KEGG: spa:M6_Spy1391 acetate CoA-transferase alpha subunit
YP_001321985.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: ctc:CTC00707 transcriptional regulatory protein
YP_001321986.1	KEGG: dsy:DSY2439 hypothetical protein
YP_001321987.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: dsy:DSY2440 hypothetical protein
YP_001321989.1	PFAM: Peptidoglycan-binding LysM; polysaccharide deacetylase; KEGG: bha:BH1917 chitooligosaccharide deacetylase
YP_001321990.1	PFAM: peptidase M29, aminopeptidase II; KEGG: bha:BH2245 aminopeptidase
YP_001321991.1	catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_001321992.1	TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: gka:GK3421 uracil-DNA glycosylase
YP_001321993.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: cpf:CPF_1735 MATE efflux family protein
YP_001321994.1	PFAM: protein of unknown function DUF45; KEGG: cpf:CPF_2595 hypothetical protein
YP_001321995.1	TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: tte:TTE1724 aspartate racemase
YP_001321996.1	PFAM: Rubrerythrin; KEGG: tko:TK1056 rubrerythrin-related protein
YP_001321997.1	TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: ctc:CTC00586 hemolysin III
YP_001321998.1	KEGG: ava:Ava_4088 hypothetical protein
YP_001321999.1	TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: ctc:CTC02522 ribonuclease BN
YP_001322000.1	PFAM: TatD-related deoxyribonuclease; amidohydrolase 2; KEGG: cgb:cg0345 metal-dependent hydrolase of the TIM-barrel fold
YP_001322001.1	KEGG: csa:Csal_0787 YCII-related
YP_001322002.1	PFAM: zinc/iron permease; KEGG: tte:TTE0144 predicted divalent heavy-metal cations transporter
YP_001322003.1	PFAM: transcriptional coactivator/pterin dehydratase; KEGG: rxy:Rxyl_2043 transcriptional coactivator/pterin dehydratase
YP_001322004.1	PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ecv:APECO1_3598 putative oxidoreductase
YP_001322005.1	PFAM: PfkB domain protein; KEGG: cac:CAC0232 1-phosphofructokinase (fructoso 1-phosphate kinase)
YP_001322006.1	TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system, EIIC; phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: eca:ECA0087 PTS system, mannitol-specific IIabc component
YP_001322007.1	PFAM: PRD domain protein; Helix-turn-helix, type 11 domain protein; KEGG: tte:TTE0598 putative transcriptional regulator
YP_001322008.1	TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphotransferase system, EIIC; phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: gka:GK1948 PTS system, mannitol-permease II, BC component
YP_001322009.1	PFAM: Coat F domain protein; KEGG: cac:CAC3317 spore coat protein F (CotF) family protein
YP_001322010.1	KEGG: cac:CAC3318 hypothetical protein
YP_001322011.1	TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: msu:MS1105 isocitrate/isopropylmalate dehydrogenase
YP_001322012.1	catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate
YP_001322014.1	KEGG: rxy:Rxyl_3061 hypothetical protein
YP_001322015.1	PFAM: NUDIX hydrolase; KEGG: cac:CAC1006 MutT-like (NUDIX) hydrolase
YP_001322016.1	PFAM: Abortive infection protein; KEGG: gfo:orf15 metal-dependent membrane protease
YP_001322017.1	KEGG: rba:RB11641 hypothetical protein
YP_001322018.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC1007 predicted acetyltransferase
YP_001322020.1	KEGG: cpf:CPF_2608 putative membrane-associated zinc metalloprotease
YP_001322021.1	PFAM: protein of unknown function UPF0150; KEGG: mta:Moth_0249 hypothetical protein
YP_001322023.1	TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: tko:TK0480 metal-dependent phosphohydrolase, HD superfamily
YP_001322025.1	PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron, maturase-specific domain protein; KEGG: mbu:Mbur_2039 RNA-directed DNA polymerase
YP_001322026.1	PFAM: Resolvase, N-terminal domain; KEGG: fra:Francci3_2088 recombinase
YP_001322027.1	KEGG: mba:Mbar_A1733 reverse transcriptase
YP_001322028.1	PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: cac:CAC2475 possible 5-Nitroimidazole antibiotics resistance protein, NimA-family
YP_001322030.1	PFAM: Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: cno:NT01CX_2005 hypothetical protein
YP_001322031.1	KEGG: bat:BAS3519 putative restriction endonuclease
YP_001322032.1	TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase, class-II; sugar isomerase (SIS); KEGG: tte:TTE2190 glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
YP_001322033.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_001322034.1	PFAM: carbon starvation protein CstA; KEGG: bcl:ABC1450 carbon starvation-induced protein
YP_001322036.1	PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: sth:STH224 2-oxoglutarate oxidoreductase gamma subunit
YP_001322037.1	PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: cth:Cthe_0865 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin)
YP_001322038.1	catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA
YP_001322039.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cth:Cthe_0867 4Fe-4S ferredoxin, iron-sulfur binding
YP_001322040.1	KEGG: cth:Cthe_0869 hypothetical protein
YP_001322041.1	catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate
YP_001322042.1	catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate
YP_001322043.1	catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate
YP_001322044.1	TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: bsu:BG11721 transcriptional activator involved in the control of isoleucine and valine utilization as sole nitrogen sources
YP_001322045.1	PFAM: YbbR family protein; KEGG: tte:TTE2207 hypothetical protein
YP_001322046.1	PFAM: protein of unknown function DUF147; KEGG: tte:TTE2209 hypothetical protein
YP_001322047.1	PFAM: transport-associated protein; KEGG: chy:CHY_0056 putative osmotically inducible protein
YP_001322049.1	PFAM: Shikimate/quinate 5-dehydrogenase; KEGG: tte:TTE2374 hypothetical protein
YP_001322050.1	PFAM: aminotransferase class-III; KEGG: tte:TTE2339 PLP-dependent aminotransferases
YP_001322051.1	PFAM: Ion transport 2 domain protein
YP_001322053.1	PFAM: protein of unknown function DUF1576; KEGG: ctc:CTC00068 hypothetical protein
YP_001322054.1	TIGRFAM: Sporulation protein YtaF; KEGG: bat:BAS4480 hypothetical protein
YP_001322055.1	KEGG: mva:Mvan_2424 protein of unknown function DUF1622
YP_001322056.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: bsu:BG13309 two-component sensor histidine kinase
YP_001322057.1	KEGG: ctc:CTC01689 hypothetical protein
YP_001322058.1	PFAM: NADPH-dependent FMN reductase; KEGG: deh:cbdb_A1323 NADPH-dependent FMN reductase
YP_001322059.1	PFAM: glutaredoxin; glutaredoxin 2; KEGG: cth:Cthe_0235 glutaredoxin-like protein, YruB-family
YP_001322060.1	TIGRFAM: A/G-specific adenine glycosylase; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; KEGG: sth:STH1727 A/G-specific adenine glycosylase
YP_001322061.1	PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sth:STH926 2-cys peroxiredoxin
YP_001322062.1	PFAM: protein of unknown function UPF0016; KEGG: pmn:PMN2A_0359 hypothetical protein
YP_001322063.1	TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; KEGG: cps:CPS_4389 glutaredoxin
YP_001322064.1	PFAM: protein of unknown function DUF1312; KEGG: cth:Cthe_0562 protein of unknown function DUF1312
YP_001322065.1	PFAM: Heptaprenyl diphosphate synthase component I; KEGG: cth:Cthe_0563 heptaprenyl diphosphate synthase component I
YP_001322066.1	KEGG: swo:Swol_0320 hypothetical protein
YP_001322067.1	PFAM: protein of unknown function DUF421; KEGG: swo:Swol_0321 hypothetical protein
YP_001322068.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: gka:GK2332 NADH-dependent flavin oxidoreductase
YP_001322069.1	TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: tte:TTE0596 metal-dependent amidase/aminoacylase/carboxypeptidase
YP_001322070.1	TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: chy:CHY_1951 diaminopimelate decarboxylase
YP_001322071.1	TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: bha:BH3316 succinate-semialdehyde dehydrogenase
YP_001322072.1	TIGRFAM: putative undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; KEGG: chy:CHY_1158 putative undecaprenol kinase
YP_001322073.1	PFAM: phage integrase domain protein SAM domain protein; KEGG: dsy:DSY2171 hypothetical protein
YP_001322076.1	KEGG: lin:lin1708 hypothetical protein
YP_001322077.1	KEGG: lin:lin1709 hypothetical protein
YP_001322078.1	KEGG: efa:EF1479 hypothetical protein
YP_001322079.1	KEGG: efa:EF1478 hypothetical protein
YP_001322081.1	KEGG: lin:lin1713 hypothetical protein
YP_001322082.1	KEGG: efa:EF1475 hypothetical protein
YP_001322083.1	KEGG: lin:lin1715 hypothetical protein
YP_001322084.1	TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: bld:BLi01480 hypothetical protein
YP_001322087.1	KEGG: lin:lin1719 hypothetical protein
YP_001322088.1	KEGG: efa:EF1469 hypothetical protein
YP_001322091.1	KEGG: lin:lin1723 hypothetical protein
YP_001322092.1	KEGG: lin:lin1724 hypothetical protein
YP_001322094.1	KEGG: lin:lin1726 hypothetical protein
YP_001322095.1	KEGG: efa:EF1462 hypothetical protein
YP_001322096.1	KEGG: lin:lin1728 hypothetical protein
YP_001322097.1	TIGRFAM: phage putative head morphogenesis protein, SPP1 gp7 family; PFAM: phage putative head morphogenesis protein, SPP1 gp7; KEGG: efa:EF1457 minor head protein
YP_001322098.1	TIGRFAM: phage-associated protein, HI1409 family; KEGG: efa:EF1456 conserved hypothetical protein TIGR01555
YP_001322099.1	TIGRFAM: phage uncharacterized protein; KEGG: bha:BH3533 hypothetical protein
YP_001322100.1	PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; KEGG: tte:TTE0730 Transcription antiterminator
YP_001322102.1	KEGG: mfa:Mfla_2702 hypothetical protein
YP_001322107.1	PFAM: cell wall hydrolase/autolysin; KEGG: bld:BLi01974 N-acetylmuramoyl-L-alanine amidase cwlL precursor (Cell wall hydrolase) (Autolysin); RBL04154
YP_001322108.1	KEGG: ssa:SSA_0424 exopolysaccharide biosynthesis protein, putative; related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like protein
YP_001322109.1	PFAM: 3D domain protein; KEGG: bsu:BG13521 similar to cell wall-binding protein
YP_001322116.1	KEGG: pol:Bpro_3769 hypothetical protein
YP_001322117.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; KEGG: cpr:CPR_1733 RNA polymerase sigma-E factor
YP_001322122.1	PFAM: SpoVT/AbrB domain protein; KEGG: swo:Swol_0047 transcription regulator AbrB
YP_001322126.1	KEGG: cjr:CJE0269 bacteriophage DNA transposition protein B, putative
YP_001322127.1	KEGG: tte:TTE2173 hypothetical protein
YP_001322132.1	PFAM: helix-turn-helix domain protein; bacteriophage CI repressor; KEGG: ecv:APECO1_376 putative repressor protein encoded within prophage CP-933O
YP_001322133.1	PFAM: transposase, IS4 family protein; KEGG: tte:TTE2604 transposase
YP_001322134.1	PFAM: protein of unknown function DUF542, ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: cac:CAC0071 uncharacterized conserved protein, YtfE E.coli ortholog
YP_001322135.1	PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: gka:GK2186 hypothetical protein
YP_001322136.1	PFAM: sodium/hydrogen exchanger; KEGG: ctc:CTC02161 putative Na(+)/H(+) antiporter
YP_001322137.1	TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; KEGG: cth:Cthe_0556 asparagine synthase (glutamine-hydrolyzing)
YP_001322138.1	PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cpr:CPR_0036 transporter, putative
YP_001322139.1	KEGG: cno:NT01CX_1207 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_001322140.1	PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: cac:CAC2416 uncharacterized protein, ErfK family; contains peptidoglycan-binding domain
YP_001322142.1	KEGG: cac:CA_P0023 hypothetical protein
YP_001322143.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: cno:NT01CX_0224 sensory transduction histidine kinase
YP_001322146.1	TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; KEGG: ctc:CTC00235 potassium uptake protein trkH
YP_001322147.1	involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain
YP_001322150.1	PFAM: cyclase family protein; KEGG: tfu:Tfu_1722 conserved hypothetical protein
YP_001322151.1	TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; Diverse 7TM receptor, transmembrane region; KEGG: swo:Swol_1622 response regulator receiver protein
YP_001322152.1	PFAM: Linocin_M18 bacteriocin protein; KEGG: tma:TM0785 bacteriocin
YP_001322153.1	KEGG: tma:TM0786 hypothetical protein
YP_001322154.1	PFAM: regulatory protein, MerR; transcription activator, effector binding; KEGG: bsu:BG12159 similar to multidrug-efflux transporter regulator
YP_001322155.1	TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: ctc:CTC01763 arginase
YP_001322156.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_001322157.1	TIGRFAM: lipoate-protein ligase B; PFAM: biotin/lipoate A/B protein ligase; KEGG: aba:Acid345_4305 lipoate-protein ligase B
YP_001322158.1	PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: dde:Dde_0046 pyruvate ferredoxin/flavodoxin oxidoreductase family protein
YP_001322159.1	PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: cth:Cthe_0865 3-methyl-2-oxobutanoate dehydrogenase (ferredoxin)
YP_001322160.1	PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cth:Cthe_0866 pyruvate flavodoxin/ferredoxin oxidoreductase-like protein
YP_001322161.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: cth:Cthe_0867 4Fe-4S ferredoxin, iron-sulfur binding
YP_001322162.1	catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate
YP_001322163.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cac:CAC3409 transcriptional regulators, LysR family
YP_001322164.1	KEGG: cno:NT01CX_1207 sensory transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein
YP_001322165.1	KEGG: bld:BLi02966 hypothetical protein
YP_001322166.1	NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis
YP_001322167.1	PFAM: protein of unknown function DUF988; KEGG: stl:stu1551 conserved hypothetical, predicted membrane protein (TMS5)
YP_001322168.1	PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_1771 rubrerythrin
YP_001322169.1	PFAM: protein of unknown function DUF610, YibQ; KEGG: btk:BT9727_1223 conserved hypothetical protein, possible divergent polysaccharide deacetylase
YP_001322170.1	KEGG: cno:NT01CX_2050 hypothetical protein
YP_001322171.1	TIGRFAM: N-acetylmuramoyl-L-alanine amidase CwlD; PFAM: cell wall hydrolase/autolysin; KEGG: tte:TTE2217 N-acetylmuramoyl-L-alanine amidase
YP_001322173.1	forms a direct contact with the tRNA during translation
YP_001322174.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_001322175.1	TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; KEGG: cth:Cthe_2939 tRNA pseudouridine synthase A
YP_001322176.1	PFAM: cobalt transport protein; KEGG: cpf:CPF_2681 cobalt ABC transporter, permease protein
YP_001322177.1	with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene
YP_001322178.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1146 ABC transporter, ATP-binding protein
YP_001322179.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_001322180.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_001322181.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_001322182.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_001322183.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_001322184.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_001322185.1	TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1, IF1 family protein; KEGG: cth:Cthe_2927 translation initiation factor IF-1
YP_001322186.1	KEGG: tte:TTE2269 hypothetical protein
YP_001322187.1	TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: tte:TTE2270 methionine aminopeptidase
YP_001322188.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_001322189.1	TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: tte:TTE2272 preprotein translocase subunit SecY
YP_001322190.1	late assembly protein
YP_001322191.1	PFAM: ribosomal protein L30; KEGG: abo:ABO_0415 50S ribosomal protein L30
YP_001322192.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_001322193.1	binds 5S rRNA along with protein L5 and L25
YP_001322194.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_001322195.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_001322196.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif
YP_001322197.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_001322198.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_001322199.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_001322200.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_001322201.1	one of the stabilizing components for the large ribosomal subunit
YP_001322202.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_001322203.1	TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3-C-terminal domain protein; KH, type 2 domain protein; Ribosomal protein S3, N-terminal domain; SMART: KH domain protein; KEGG: cth:Cthe_2909 ribosomal protein S3
YP_001322204.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_001322205.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_001322206.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_001322207.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_001322208.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_001322209.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_001322210.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_001322211.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001322212.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_001322213.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_001322214.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_001322215.1	KEGG: mta:Moth_2466 ribosomal protein L7Ae/L30e/S12e/Gadd45
YP_001322216.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_001322217.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_001322218.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_001322219.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_001322220.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_001322221.1	binds directly to 23S ribosomal RNA
YP_001322222.1	TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; KOW (Kyrpides, Ouzounis, Woese) domain protein; KEGG: cth:Cthe_2719 NusG antitermination factor
YP_001322223.1	TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: dsy:DSY0453 hypothetical protein
YP_001322224.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif
YP_001322225.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_001322226.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_001322227.1	PFAM: protein of unknown function DUF901; KEGG: lmo:lmo0242 similar to B. subtilis Yacp protein
YP_001322228.1	TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; KEGG: cth:Cthe_2060 RNA methyltransferase, TrmH family, group 3
YP_001322229.1	flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor
YP_001322231.1	PFAM: ribonuclease III; KEGG: cth:Cthe_2061 hypothetical protein
YP_001322232.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_001322233.1	TIGRFAM: serine O-acetyltransferase; KEGG: tte:TTE2316 serine acetyltransferase
YP_001322234.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_001322235.1	PFAM: protein of unknown function DUF1002; KEGG: tte:TTE1117 hypothetical protein
YP_001322236.1	TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; KEGG: cno:NT01CX_0736 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
YP_001322237.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_001322238.1	PFAM: PilT protein domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Nucleotide binding protein, PINc; KEGG: ctc:CTC02627 pili retraction protein PilT
YP_001322239.1	PFAM: transcription factor CarD; KEGG: mta:Moth_2489 transcriptional regulator, CarD family
YP_001322240.1	KEGG: sth:STH3126 hypothetical protein
YP_001322241.1	non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair
YP_001322242.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_001322243.1	PFAM: UvrB/UvrC protein; AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: tte:TTE2327 ATPases with chaperone activity, ATP-binding subunit
YP_001322244.1	PFAM: ATP:guanido phosphotransferase; KEGG: cth:Cthe_1790 ATP:guanido phosphotransferase
YP_001322245.1	PFAM: UvrB/UvrC protein; KEGG: tte:TTE2329 hypothetical protein
YP_001322246.1	TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; GTP-binding protein, HSR1-related; elongation factor Tu, domain 2 protein; elongation factor G, domain IV; Miro domain protein; KEGG: tte:TTE2333 translation elongation and release factors (GTPases)
YP_001322247.1	TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class I and II; KEGG: mta:Moth_0515 histidinol-phosphate aminotransferase
YP_001322248.1	PFAM: superoxide dismutase, copper/zinc binding; KEGG: ctc:CTC00590 superoxide dismutase (Cu-Zn)
YP_001322249.1	KEGG: dar:Daro_3104 hypothetical protein
YP_001322250.1	PFAM: Chloride channel, core; KEGG: mtp:Mthe_1465 Cl-channel, voltage-gated family protein
YP_001322251.1	TIGRFAM: ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent; PFAM: ATP-cone domain protein; KEGG: lac:LBA0041 ribonucleoside triphosphate reductase
YP_001322252.1	KEGG: sth:STH1268 hypothetical protein
YP_001322253.1	KEGG: tte:TTE2338 hypothetical protein
YP_001322254.1	converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA
YP_001322255.1	TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: tte:TTE2372 lysyl-tRNA synthetase class II
YP_001322256.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_001322257.1	KEGG: tte:TTE2375 hypothetical protein
YP_001322258.1	TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; dihydroorotate dehydrogenase; KEGG: tte:TTE0344 predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family
YP_001322259.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_001322260.1	KEGG: tte:TTE2382 membrane protein
YP_001322261.1	PFAM: chemotaxis sensory transducer; KEGG: bld:BLi00758 YfmS
YP_001322262.1	PFAM: Gluconate transporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bha:BH3897 hypothetical protein
YP_001322263.1	PFAM: coenzyme A transferase; KEGG: bha:BH3898 acetyl-CoA:acetoacetyl-CoA transferase
YP_001322264.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: PAS domain containing protein; AAA ATPase; KEGG: btl:BALH_2657 sensory box sigma-54 dependent DNA-binding response regulator
YP_001322265.1	TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix, type 11 domain protein; KEGG: cno:NT01CX_0898 BirA bifunctional protein, putative
YP_001322266.1	TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit; KEGG: saz:Sama_1053 oxaloacetate decarboxylase
YP_001322267.1	PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cth:Cthe_0700 biotin/lipoyl attachment protein
YP_001322268.1	PFAM: sodium pump decarboxylase, gamma subunit
YP_001322269.1	PFAM: carboxyl transferase; KEGG: tte:TTE2385 Acetyl-CoA carboxylase alpha subunit
YP_001322270.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sfu:Sfum_0455 glyoxalase/bleomycin resistance protein/dioxygenase
YP_001322271.1	TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: AAA ATPase; KEGG: tko:TK0329 lysine/arginine/ornithine transport system kinase
YP_001322272.1	PFAM: cobalamin B12-binding domain protein; KEGG: tte:TTE2388 methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding)
YP_001322273.1	TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; KEGG: tte:TTE2389 Methylmalonyl-CoA mutase, N-terminal domain/subunit
YP_001322274.1	TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: tte:TTE2393 ATP-dependent Zn proteases
YP_001322275.1	TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: tte:TTE2395 predicted ATPase of the PP-loop superfamily implicated in cell cycle control
YP_001322276.1	PFAM: protein kinase; SMART: serine/threonine protein kinase; KEGG: oih:OB0076 serine:threonine protein kinase
YP_001322277.1	KEGG: bsu:BG10128 similar to unknown proteins
YP_001322279.1	PFAM: cobalamin B12-binding domain protein; KEGG: tte:TTE0727 D-lysine 5,6-aminomutase beta subunit
YP_001322280.1	PFAM: D-Lysine 5,6-aminomutase alpha subunit; KEGG: tte:TTE0726 D-lysine 5,6-aminomutase alpha subunit
YP_001322281.1	PFAM: DNA mismatch repair protein MutS domain protein; SMART: MutS III domain protein; KEGG: tte:TTE0725 MutS-like ATPase involved in mismatch repair, family 2
YP_001322282.1	KEGG: tte:TTE0724 hypothetical protein
YP_001322283.1	TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: ctc:CTC00890 L-lysine 2,3-aminomutase
YP_001322284.1	KEGG: pgi:PG1069 alcohol dehydrogenase, zinc-containing, putative
YP_001322285.1	TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: tte:TTE0717 NtrC family transcriptional regulator, ATPase domain
YP_001322286.1	PFAM: putative RNA methylase; KEGG: dsy:DSY2076 hypothetical protein
YP_001322288.1	PFAM: metallophosphoesterase; KEGG: bca:BCE_2541 hypothetical protein
YP_001322290.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_001322291.1	KEGG: ctc:CTC00833 putative tryptophan transport protein
YP_001322292.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_001322293.1	KEGG: mta:Moth_2002 biotin/lipoyl attachment
YP_001322294.1	PFAM: protein of unknown function DUF182; KEGG: aba:Acid345_2647 protein of unknown function DUF182
YP_001322295.1	KEGG: gme:Gmet_2140 conserved hypothetical protein, possibly involved in molybdenum cofactor biosynthesis
YP_001322296.1	KEGG: dsy:DSY0867 hypothetical protein
YP_001322297.1	TIGRFAM: adenine deaminase; PFAM: amidohydrolase; KEGG: cac:CAC0887 adenine deaminase
YP_001322298.1	PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: mta:Moth_1225 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
YP_001322299.1	PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: mta:Moth_1226 aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead
YP_001322300.1	PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: chy:CHY_0691 2Fe-2S iron-sulfur cluster binding domain
YP_001322301.1	PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: chy:CHY_0690 carbon monoxide dehydrogenase, medium subunit
YP_001322302.1	Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline
YP_001322303.1	PFAM: Xanthine/uracil/vitamin C permease; KEGG: cpf:CPF_1827 xanthine/uracil permease family protein
YP_001322304.1	TIGRFAM: adenine deaminase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: chy:CHY_0689 adenine deaminase
YP_001322305.1	PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: chy:CHY_0688 ethanolamine utilization protein EutN
YP_001322306.1	KEGG: rpc:RPC_1171 hypothetical protein
YP_001322307.1	PFAM: microcompartments protein; KEGG: lmo:lmo1159 hypothetical protein
YP_001322308.1	PFAM: microcompartments protein; KEGG: chy:CHY_0684 bacterial microcompartments family protein
YP_001322310.1	PFAM: microcompartments protein; KEGG: chy:CHY_0682 propanediol utilization protein PduA
YP_001322311.1	TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: chy:CHY_0681 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein
YP_001322312.1	TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: chy:CHY_0680 putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
YP_001322313.1	PFAM: isochorismatase hydrolase; KEGG: chy:CHY_0679 isochorismatase family protein
YP_001322314.1	TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: chy:CHY_0678 allantoinase
YP_001322315.1	PFAM: formate-tetrahydrofolate ligase, FTHFS; KEGG: mta:Moth_0109 formate--tetrahydrofolate ligase
YP_001322316.1	TIGRFAM: glutamate formiminotransferase; PFAM: Formiminotransferase domain protein; Formiminotransferase-like; KEGG: chy:CHY_0695 glutamate formiminotransferase
YP_001322317.1	PFAM: cyclase family protein; KEGG: chy:CHY_0702 putative cyclase
YP_001322318.1	PFAM: purine catabolism PurC domain protein; KEGG: mta:Moth_2125 transcriptional regulator, CdaR
YP_001322319.1	PFAM: Formiminotransferase-cyclodeaminase; KEGG: tde:TDE0046 formiminotransferase-cyclodeaminase family protein
YP_001322320.1	PFAM: Domain of unknown function DUF1934; KEGG: tte:TTE2534 hypothetical protein
YP_001322321.1	TIGRFAM: D-alanine--D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; protein of unknown function DUF201; D-alanine--D-alanine ligase domain protein; RimK domain protein ATP-grasp; KEGG: cth:Cthe_1938 D-alanine--D-alanine ligase
YP_001322322.1	TIGRFAM: Sporulation stage II, protein R; KEGG: cth:Cthe_1920 stage II sporulation protein R
YP_001322323.1	KEGG: gka:GK0611 hypothetical protein
YP_001322325.1	KEGG: cac:CAC2600 predicted membrane protein
YP_001322327.1	TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: tte:TTE2554 spore germination protein homolog YndE
YP_001322328.1	TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: tte:TTE2554 spore germination protein homolog YndE
YP_001322329.1	PFAM: spore germination B3 GerAC family protein; KEGG: tte:TTE2553 germination protein
YP_001322330.1	PFAM: GerA spore germination protein; KEGG: tte:TTE2555 putative spore germination protein
YP_001322332.1	KEGG: tte:TTE2557 hypothetical protein
YP_001322333.1	PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: cth:Cthe_2404 transcriptional regulator, GntR family
YP_001322334.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_001322335.1	PFAM: Peptidoglycan-binding LysM; KEGG: cth:Cthe_2402 peptidoglycan-binding LysM
YP_001322336.1	KEGG: tte:TTE0861 hypothetical protein
YP_001322337.1	catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP
YP_001322338.1	catalyzes the formation of ornithine and carbamylphosphate from citrulline in the arginine catabolic pathway
YP_001322339.1	PFAM: amidinotransferase; KEGG: tte:TTE0531 Arginine deiminase
YP_001322340.1	PFAM: protein of unknown function DUF1021; KEGG: cth:Cthe_2401 protein of unknown function DUF1021
YP_001322341.1	TIGRFAM: SpoIID/LytB domain protein; PFAM: cell wall hydrolase/autolysin; KEGG: gka:GK3340 stage II sporulation protein D
YP_001322342.1	PFAM: regulatory protein, MarR; KEGG: ctc:CTC00126 transcriptional regulator, marR family
YP_001322343.1	KEGG: swo:Swol_0466 hypothetical protein
YP_001322345.1	Contains selenocysteine; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: gme:Gmet_2723 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
YP_001322346.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_001322347.1	PFAM: Citrate transporter; Na+/H+ antiporter NhaC; KEGG: bce:BC0373 Na+/H+ antiporter NnaC
YP_001322349.1	PFAM: FMN-binding domain protein; KEGG: dsy:DSY3139 putative fumarate reductase flavoprotein subunit
YP_001322350.1	TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: chy:CHY_2045 phosphate transport system regulatory protein PhoU
YP_001322351.1	TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chy:CHY_2116 phosphate ABC transporter, ATP-binding protein PstB
YP_001322352.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sfu:Sfum_0703 phosphate ABC transporter, inner membrane subunit PstA
YP_001322353.1	TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mba:Mbar_A1779 phosphate ABC transporter, permease protein
YP_001322354.1	TIGRFAM: phosphate binding protein; KEGG: mma:MM2005 phosphate-binding protein
YP_001322355.1	PFAM: beta-lactamase domain protein; KEGG: tma:TM1162 conserved hypothetical protein
YP_001322356.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: ctc:CTC00807 membrane protein, putative transporter
YP_001322357.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0512 iron transport system ATP-binding protein
YP_001322358.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0514 iron(III) transport system permease protein
YP_001322359.1	PFAM: extracellular solute-binding protein, family 1; KEGG: bha:BH0513 iron(III) transport system substrate-binding protein
YP_001322360.1	TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: ctc:CTC00312 acetyl-CoA acetyltransferase
YP_001322361.1	TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: bha:BH3896 3-oxoacyl-(acyl-carrier protein) reductase
YP_001322362.1	PFAM: protein of unknown function UPF0118; KEGG: cno:NT01CX_1730 permease
YP_001322363.1	PFAM: protein of unknown function DUF421; KEGG: bld:BLi00270 hypothetical protein
YP_001322364.1	TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; KEGG: ctc:CTC01851 tRNA pseudouridine synthase A
YP_001322365.1	KEGG: sus:Acid_1308 hypothetical protein
YP_001322366.1	PFAM: glutamate--cysteine ligase, GCS2; KEGG: zmo:ZMO1556 gamma-glutamylcysteine synthetase
YP_001322368.1	PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY4038 hypothetical protein
YP_001322369.1	PFAM: nitroreductase; KEGG: dsy:DSY1470 hypothetical protein
YP_001322370.1	KEGG: tko:TK0873 hypothetical protein
YP_001322371.1	KEGG: tko:TK0874 predicted metallophosphoesterase, calcineurin superfamily
YP_001322372.1	PFAM: thiamineS protein; KEGG: chy:CHY_0791 molybdopterin converting factor, subunit 1
YP_001322373.1	PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase-like; KEGG: chy:CHY_0789 aldehyde ferredoxin oxidoreductase, tungsten-containing
YP_001322374.1	TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: cno:NT01CX_0469 signal-transduction and transcriptional-control protein
YP_001322375.1	PFAM: peptidase M28; KEGG: ctc:pE88_21 putative aminopeptidase
YP_001322376.1	PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: cpf:CPF_1799 molybdopterin oxidoreductase
YP_001322377.1	TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: ctc:CTC01332 transketolase
YP_001322378.1	PFAM: dUTPase; KEGG: bha:BH3133 hypothetical protein
YP_001322379.1	PFAM: SEC-C motif domain protein; KEGG: ctc:CTC00166 hypothetical protein
YP_001322380.1	TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: pfu:PF1850 hypothetical damage-inducible DinF protein
YP_001322381.1	TIGRFAM: putative proton-coupled thiamine transporter YuaJ; KEGG: tte:TTE2512 hypothetical protein
YP_001322382.1	PFAM: Desulfoferrodoxin, ferrous iron-binding region; KEGG: tte:TTE2229 putative superoxide reductase
YP_001322384.1	PFAM: phospholipase D/Transphosphatidylase; KEGG: bcz:BCZK1088 cardiolipin synthetase
YP_001322385.1	PFAM: Patatin; KEGG: tte:TTE1792 hypothetical protein
YP_001322386.1	PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tte:TTE0445 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit
YP_001322387.1	PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0640 ABC transporter
YP_001322388.1	KEGG: bha:BH1562 hypothetical protein
YP_001322389.1	catalyzes the formation of asparagine from aspartate and ammonia
YP_001322390.1	TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: ctc:CTC02359 hemerythrin-like domain protein DcrH
YP_001322392.1	PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cth:Cthe_1461 FAD dependent oxidoreductase
YP_001322393.1	PFAM: protein of unknown function DUF458; KEGG: cac:CAC0166 hypothetical protein
YP_001322394.1	PFAM: protein of unknown function DUF1063; KEGG: ctc:CTC02309 hypothetical protein
YP_001322395.1	PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: tte:TTE0268 NtrC family transcriptional regulator, ATPase domain
YP_001322396.1	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: cac:CAC3580 dioxygenase related to 2-nitropropane dioxygenase
YP_001322397.1	PFAM: ABC-2 type transporter; KEGG: dar:Daro_0987 ABC-2:ABC transporter related
YP_001322398.1	KEGG: deh:cbdb_A134 ABC transporter, permease protein
YP_001322399.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msm:MSMEG_1502 ABC transporter, ATP-binding protein
YP_001322400.1	PFAM: regulatory protein, TetR; KEGG: dsy:DSY4804 hypothetical protein
YP_001322401.1	PFAM: DNA mismatch repair protein MutS domain protein; KEGG: dsy:DSY2437 hypothetical protein
YP_001322402.1	PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: cpr:CPR_0208 transcriptional regulator, AraC family
YP_001322404.1	KEGG: mbu:Mbur_1109 hypothetical protein
YP_001322410.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rfr:Rfer_4146 sigma-24 (FecI-like)
YP_001322411.1	PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22)
YP_001322412.1	PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein
YP_001322414.1	PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_1827 copper amine oxidase-like protein
YP_001322420.1	TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: btk:BT9727_4602 possible RNA polymerase sigma factor, ECF subfamily
YP_001322422.1	TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: ctc:CTC02090 ATP-dependent DNA helicase recQ
YP_001322423.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cpr:CPR_0440 lactoylglutathione lyase
YP_001322425.1	PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: ctc:CTC00155 tRNA pseudouridine synthase A
YP_001322426.1	PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: bsu:BG12963 similar to RNA helicase
YP_001322429.1	KEGG: tko:TK0479 hypothetical protein
YP_001322430.1	TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: afu:AF0635 immunogenic protein
YP_001322431.1	PFAM: Domain of unknown function DUF1850; KEGG: sfu:Sfum_3722 hypothetical protein
YP_001322432.1	TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: bha:BH2945 hypothetical protein
YP_001322433.1	SMART: Rhodanese domain protein
YP_001322435.1	PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cno:NT01CX_0310 transcriptional regulators, LysR family
YP_001322436.1	PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: ctc:CTC01176 membrane spanning protein
YP_001322437.1	PFAM: SirA family protein; KEGG: cno:NT01CX_0312 uncharacterized protein family UPF0033 superfamily
YP_001322438.1	PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: cno:NT01CX_0313 putative transporter
YP_001322439.1	KEGG: ctc:CTC00153 transcriptional regulatory protein
YP_001322440.1	KEGG: ctc:CTC00154 hypothetical protein
YP_001322441.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: bch:Bcen2424_2564 protein of unknown function DUF6, transmembrane
YP_001322442.1	KEGG: tte:TTE2425 hypothetical protein
YP_001322444.1	PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC01857 methyl-accepting chemotaxis protein
YP_001322445.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH2078 nickel transport system ATP-binding protein
YP_001322446.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH2077 nickel transport system ATP-binding protein
YP_001322447.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0986 oligopeptide ABC transporter permease
YP_001322448.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0985 nickel transport system permease
YP_001322449.1	TIGRFAM: nickel ABC transporter, periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein, family 5; KEGG: wsu:WS0982 putative nikA protein
YP_001322450.1	PFAM: major facilitator superfamily MFS_1; KEGG: dsy:DSY3748 hypothetical protein
YP_001322451.1	PFAM: phosphoesterase, PA-phosphatase related; KEGG: sus:Acid_5127 phosphoesterase, PA-phosphatase related
YP_001322452.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bha:BH3305 hypothetical protein
YP_001322453.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY0298 hypothetical protein
YP_001322454.1	PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; KEGG: btl:BALH_2995 transcriptional regulator, GntR family
YP_001322455.1	PFAM: protein of unknown function DUF6, transmembrane; KEGG: bha:BH0390 hypothetical protein
YP_001322456.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC1506 response regulator (CheY-like receiver domain and a HTH)
YP_001322457.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: cac:CAC1507 sensory transduction histidine kinase (with HAMP domain)
YP_001322459.1	PFAM: transposase IS3/IS911 family protein; KEGG: bha:BH3445 transposase (05)
YP_001322460.1	PFAM: peptidase M56, BlaR1; KEGG: swo:Swol_0431 antirepressor regulating drug resistance predicted signal transduction N-terminal membrane component-like protein
YP_001322461.1	PFAM: Penicillinase repressor; KEGG: swo:Swol_0429 transcriptional repressor, CopY family
YP_001322463.1	PFAM: ABC transporter related; TOBE domain protein; transport-associated protein OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein
YP_001322464.1	PFAM: extracellular solute-binding protein, family 1; KEGG: dsy:DSY1083 hypothetical protein
YP_001322465.1	KEGG: dsy:DSY1081 hypothetical protein
YP_001322466.1	TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dsy:DSY1080 hypothetical protein
YP_001322467.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1079 hypothetical protein
YP_001322468.1	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1078 hypothetical protein
YP_001322469.1	PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bad:BAD_0931 ABC transporter domain protein
YP_001322470.1	PFAM: protein of unknown function DUF214; KEGG: smu:SMU.1093 putative ABC transporter, permease protein
YP_001322471.1	PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE1017 sensory transduction histidine kinase
YP_001322472.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ctc:CTC01482 transcriptional activator protein
YP_001322473.1	Contains selenocysteine
YP_001322474.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_001322475.1	KEGG: tte:TTE2682 hypothetical protein
YP_001322476.1	PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: tte:TTE2683 trypsin-like serine protease, typically periplasmic, contain C-terminal PDZ domain
YP_001322477.1	PFAM: beta-lactamase domain protein; KEGG: cth:Cthe_2327 beta-lactamase-like protein
YP_001322478.1	TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: cno:NT01CX_0948 UDP-N-acetylglucosamine 1-carboxyvinyltransferase
YP_001322479.1	KEGG: tte:TTE2685 hypothetical protein
YP_001322480.1	KEGG: sep:SE0020 hypothetical protein
YP_001322482.1	KEGG: tte:TTE2688 sensory transduction histidine kinases; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; PAS fold domain protein; SMART: PAS domain containing protein
YP_001322483.1	PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_2333 two component transcriptional regulator, winged helix family
YP_001322484.1	KEGG: tte:TTE2690 hypothetical protein
YP_001322485.1	PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: oih:OB2375 intracellular alkaline serine proteinase
YP_001322486.1	PFAM: Peptidoglycan-binding LysM; peptidase M23B; G5 domain protein; KEGG: tte:TTE2691 membrane proteins related to metalloendopeptidase
YP_001322487.1	PFAM: Peptidase M1, membrane alanine aminopeptidase-like; KEGG: tte:TTE2694 aminopeptidase N
YP_001322488.1	TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: ctc:CTC00124 DNA replication protein DnaD
YP_001322489.1	acts to load the DnaB helicase onto the initiation site during DNA replication
YP_001322490.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_001322491.1	Contains selenocysteine; KEGG: cth:Cthe_3092 conserved hypothetical protein, CF-27 family
YP_001322492.1	PFAM: GCN5-related N-acetyltransferase; KEGG: tma:TM0968 hypothetical protein
YP_001322493.1	TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase, N-terminal domain protein; DnaB domain protein helicase, C-terminal domain protein; KEGG: cth:Cthe_2256 replicative DNA helicase
YP_001322494.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_001322495.1	PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: cth:Cthe_2258 phosphoesterase, RecJ-like protein
YP_001322496.1	KEGG: bld:BLi04355 YybS
YP_001322497.1	KEGG: cth:Cthe_2259 hypothetical protein
YP_001322498.1	KEGG: cno:NT01CX_1247 hypothetical protein
YP_001322499.1	PFAM: sigmaK-factor processing regulatory BofA; KEGG: cth:Cthe_2389 sigmaK-factor processing regulatory BofA
YP_001322500.1	KEGG: tte:TTE0043 hypothetical protein
YP_001322501.1	PFAM: PhoH family protein; SMART: Nucleotide binding protein, PINc; KEGG: bha:BH2629 PhoH-like ATPase
YP_001322502.1	PFAM: sodium/hydrogen exchanger; KEGG: ctc:CTC01423 putative Na(+)/H(+) antiporter
YP_001322503.1	KEGG: cth:Cthe_1401 hypothetical protein
YP_001322504.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_001322505.1	PFAM: conserved hypothetical protein 103; KEGG: cno:NT01CX_0824 conserved hypothetical protein TIGR00103
YP_001322506.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_001322507.1	KEGG: cth:Cthe_2712 hypothetical protein
YP_001322508.1	KEGG: cth:Cthe_2711 hypothetical protein
YP_001322509.1	KEGG: cth:Cthe_2710 uncharacterized membrane protein-like protein
YP_001322510.1	PFAM: protein of unknown function DUF1256; KEGG: cth:Cthe_2165 protein of unknown function DUF1256
YP_001322511.1	KEGG: cth:Cthe_0718 hypothetical protein
YP_001322512.1	PFAM: diacylglycerol kinase, catalytic region; KEGG: tte:TTE2787 hypothetical protein
YP_001322513.1	KEGG: cth:Cthe_2379 hypothetical protein
YP_001322514.1	TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: tte:TTE2789 selenocysteine lyase
YP_001322515.1	TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: tte:TTE0729 predicted epimerase, PhzC/PhzF homolog
YP_001322516.1	TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: tte:TTE2790 predicted Transcriptional regulator
YP_001322517.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: cth:Cthe_2377 cobyrinic acid a,c-diamide synthase
YP_001322518.1	PFAM: protein of unknown function UPF0016; KEGG: gvi:gsr0120 hypothetical protein
YP_001322519.1	TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cth:Cthe_2362 ParB-like partition protein
YP_001322520.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_001322521.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_001322522.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_001322523.1	PFAM: single-stranded nucleic acid binding R3H domain protein; KEGG: cpe:CPE2656 SpoIIIJ-associated protein
YP_001322524.1	PFAM: 60 kDa inner membrane insertion protein; KEGG: mta:Moth_2521 60 kDa inner membrane insertion protein
YP_001322525.1	PFAM: protein of unknown function DUF37; KEGG: bcl:ABC2506 hypothetical protein
YP_001322526.1	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates
YP_001322527.1	in Escherichia coli transcription of this gene is enhanced by polyamines