-- dump date 20140618_194335 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001511567.1 158319060 5678635 49..1404 1 NC_009922.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1404 dnaA 5678635 dnaA Alkaliphilus oremlandii OhILAs chromosomal replication initiation protein YP_001511567.1 49 D 350688 CDS YP_001511568.1 158319061 5676069 1642..2748 1 NC_009922.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2748 5676069 Clos_0002 Alkaliphilus oremlandii OhILAs DNA polymerase III subunit beta YP_001511568.1 1642 D 350688 CDS YP_001511569.1 158319062 5676468 2846..3061 1 NC_009922.1 PFAM: RNA-binding S4 domain protein; KEGG: amt:Amet_0003 RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 3061 5676468 Clos_0003 Alkaliphilus oremlandii OhILAs RNA-binding S4 domain-containing protein YP_001511569.1 2846 D 350688 CDS YP_001511570.1 158319063 5676469 3236..4333 1 NC_009922.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4333 recF 5676469 recF Alkaliphilus oremlandii OhILAs recombination protein F YP_001511570.1 3236 D 350688 CDS YP_001511571.1 158319064 5676470 4422..4757 1 NC_009922.1 KEGG: amt:Amet_0005 conserved hypothetical protein; hypothetical protein 4757 5676470 Clos_0005 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511571.1 4422 D 350688 CDS YP_001511572.1 158319065 5676471 4884..6794 1 NC_009922.1 KEGG: amt:Amet_0006 DNA gyrase, B subunit; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase subunit B domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 6794 5676471 Clos_0006 Alkaliphilus oremlandii OhILAs DNA gyrase subunit B YP_001511572.1 4884 D 350688 CDS YP_001511573.1 158319066 5676472 6807..9266 1 NC_009922.1 KEGG: amt:Amet_0007 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; DNA gyrase subunit A 9266 5676472 Clos_0007 Alkaliphilus oremlandii OhILAs DNA gyrase subunit A YP_001511573.1 6807 D 350688 CDS YP_001511574.1 158319067 5676473 9496..9813 1 NC_009922.1 TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: amt:Amet_0008 anti-sigma-factor antagonist; anti-sigma-factor antagonist 9813 5676473 Clos_0008 Alkaliphilus oremlandii OhILAs anti-sigma-factor antagonist YP_001511574.1 9496 D 350688 CDS YP_001511575.1 158319068 5676474 9821..10249 1 NC_009922.1 KEGG: amt:Amet_0009 putative anti-sigma regulatory factor, serine/threonine protein kinase; putative anti-sigma regulatory factor 10249 5676474 Clos_0009 Alkaliphilus oremlandii OhILAs putative anti-sigma regulatory factor YP_001511575.1 9821 D 350688 CDS YP_001511576.1 158319069 5676475 10249..11061 1 NC_009922.1 TIGRFAM: RNA polymerase sigma-70; RNA polymerase sigma-B/F/G type; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: amt:Amet_0010 phage transcriptional regulator, RinA family; FliA/WhiG family RNA polymerase sigma factor 11061 5676475 Clos_0010 Alkaliphilus oremlandii OhILAs FliA/WhiG family RNA polymerase sigma factor YP_001511576.1 10249 D 350688 CDS YP_001511577.1 158319070 5678211 16349..16867 1 NC_009922.1 PFAM: 3H domain protein; Helix-turn-helix type 11 domain protein; KEGG: amt:Amet_0020 3H domain protein; 3H domain-containing protein 16867 5678211 Clos_0011 Alkaliphilus oremlandii OhILAs 3H domain-containing protein YP_001511577.1 16349 D 350688 CDS YP_001511578.1 158319071 5678212 16911..17957 1 NC_009922.1 KEGG: amt:Amet_0021 phosphotransferase system, EIIC; phosphotransferase system, EIIC 17957 5678212 Clos_0012 Alkaliphilus oremlandii OhILAs phosphotransferase system, EIIC YP_001511578.1 16911 D 350688 CDS YP_001511579.1 158319072 5678213 complement(18122..18316) 1 NC_009922.1 KEGG: amt:Amet_0023 hypothetical protein; hypothetical protein 18316 5678213 Clos_0013 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511579.1 18122 R 350688 CDS YP_001511580.1 158319073 5678214 18900..20177 1 NC_009922.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 20177 5678214 Clos_0014 Alkaliphilus oremlandii OhILAs seryl-tRNA synthetase YP_001511580.1 18900 D 350688 CDS YP_001511581.1 158319074 5678215 20282..20449 1 NC_009922.1 hypothetical protein 20449 5678215 Clos_0015 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511581.1 20282 D 350688 CDS YP_001511582.1 158319075 5678345 20878..22308 1 NC_009922.1 PFAM: peptidase S41; KEGG: ctc:CTC01477 hypothetical protein; peptidase S41 22308 5678345 Clos_0016 Alkaliphilus oremlandii OhILAs peptidase S41 YP_001511582.1 20878 D 350688 CDS YP_001511583.1 158319076 5678346 22464..22763 1 NC_009922.1 PFAM: YCII-related; KEGG: amt:Amet_4264 YCII-related; YCII-like protein 22763 5678346 Clos_0017 Alkaliphilus oremlandii OhILAs YCII-like protein YP_001511583.1 22464 D 350688 CDS YP_001511584.1 158319077 5678347 22876..23340 1 NC_009922.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: amt:Amet_0026 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 23340 5678347 Clos_0018 Alkaliphilus oremlandii OhILAs zinc-binding CMP/dCMP deaminase YP_001511584.1 22876 D 350688 CDS YP_001511585.1 158319078 5678609 23941..24945 1 NC_009922.1 TIGRFAM: lipoyltransferase and lipoate-protein ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: cbo:CBO1635 lipoate-protein ligase; lipoyltransferase and lipoate-protein ligase 24945 5678609 Clos_0019 Alkaliphilus oremlandii OhILAs lipoyltransferase and lipoate-protein ligase YP_001511585.1 23941 D 350688 CDS YP_001511586.1 158319079 5678610 complement(25004..26275) 1 NC_009922.1 KEGG: cth:Cthe_2130 hypothetical protein; hypothetical protein 26275 5678610 Clos_0020 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511586.1 25004 R 350688 CDS YP_001511587.1 158319080 5678611 complement(26419..26781) 1 NC_009922.1 KEGG: cth:Cthe_2131 hypothetical protein; hypothetical protein 26781 5678611 Clos_0021 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511587.1 26419 R 350688 CDS YP_001511588.1 158319081 5678612 27112..27720 1 NC_009922.1 PFAM: SirA family protein; KEGG: amt:Amet_0027 SirA family protein; SirA family protein 27720 5678612 Clos_0022 Alkaliphilus oremlandii OhILAs SirA family protein YP_001511588.1 27112 D 350688 CDS YP_001511589.1 158319082 5678613 27736..28005 1 NC_009922.1 KEGG: amt:Amet_0028 conserved hypothetical protein; hypothetical protein 28005 5678613 Clos_0023 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511589.1 27736 D 350688 CDS YP_001511590.1 158319083 5678614 28022..28210 1 NC_009922.1 PFAM: protein of unknown function DUF951; KEGG: amt:Amet_0030 protein of unknown function DUF951; hypothetical protein 28210 5678614 Clos_0024 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511590.1 28022 D 350688 CDS YP_001511591.1 158319084 5678615 28424..29599 1 NC_009922.1 PFAM: aminotransferase class I and II; KEGG: amt:Amet_0031 putative transcriptional regulator, GntR family; GntR family transcriptional regulator 29599 5678615 Clos_0025 Alkaliphilus oremlandii OhILAs GntR family transcriptional regulator YP_001511591.1 28424 D 350688 CDS YP_001511592.1 158319085 5678616 29851..31608 1 NC_009922.1 KEGG: amt:Amet_0663 sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: CBS domain containing protein; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; PAS modulated sigma54 specific transcriptional regulator 31608 5678616 Clos_0026 Alkaliphilus oremlandii OhILAs PAS modulated sigma54 specific transcriptional regulator YP_001511592.1 29851 D 350688 CDS YP_001511593.1 158319086 5678636 31947..33113 1 NC_009922.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: amt:Amet_0664 respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; respiratory-chain NADH dehydrogenase domain-containing protein 33113 5678636 Clos_0027 Alkaliphilus oremlandii OhILAs respiratory-chain NADH dehydrogenase domain-containing protein YP_001511593.1 31947 D 350688 CDS YP_001511594.1 158319087 5678637 33239..35122 1 NC_009922.1 PFAM: Glycine/sarcosine/betaine reductase complex protein B alpha and beta subunits; KEGG: amt:Amet_0665 D-proline reductase (dithiol); glycine/sarcosine/betaine reductase complex protein B subunits alpha and beta 35122 5678637 Clos_0028 Alkaliphilus oremlandii OhILAs glycine/sarcosine/betaine reductase complex protein B subunits alpha and beta YP_001511594.1 33239 D 350688 CDS YP_001511595.1 158319088 5678638 35154..35438 1 NC_009922.1 KEGG: amt:Amet_0666 hypothetical protein; hypothetical protein 35438 5678638 Clos_0029 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511595.1 35154 D 350688 CDS YP_001511596.1 158319089 5678639 35419..36144 1 NC_009922.1 KEGG: cbo:CBO2477 subunit of proline reductase; Contains selenocysteine; D-proline reductase 36144 5678639 Clos_0030 Alkaliphilus oremlandii OhILAs D-proline reductase YP_001511596.1 35419 D 350688 CDS YP_001511597.1 158319090 5678640 36201..36962 1 NC_009922.1 KEGG: cdf:CD3240 hypothetical protein; D-proline reductase 36962 5678640 Clos_0031 Alkaliphilus oremlandii OhILAs D-proline reductase YP_001511597.1 36201 D 350688 CDS YP_001511598.1 158319091 5678641 36977..37447 1 NC_009922.1 KEGG: amt:Amet_0670 D-proline reductase (dithiol); D-proline reductase 37447 5678641 Clos_0032 Alkaliphilus oremlandii OhILAs D-proline reductase YP_001511598.1 36977 D 350688 CDS YP_001511599.1 158319092 5678642 37448..38455 1 NC_009922.1 PFAM: proline racemase; KEGG: amt:Amet_0671 proline racemase; proline racemase 38455 5678642 Clos_0033 Alkaliphilus oremlandii OhILAs proline racemase YP_001511599.1 37448 D 350688 CDS YP_001511600.1 158319093 5678643 38545..39432 1 NC_009922.1 KEGG: cbo:CBO3180 membrane protein; membrane protein 39432 5678643 Clos_0034 Alkaliphilus oremlandii OhILAs membrane protein YP_001511600.1 38545 D 350688 CDS YP_001511601.1 158319094 5678644 39789..40073 1 NC_009922.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 40073 rpsF 5678644 rpsF Alkaliphilus oremlandii OhILAs 30S ribosomal protein S6 YP_001511601.1 39789 D 350688 CDS YP_001511602.1 158319095 5677719 40093..40506 1 NC_009922.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: amt:Amet_0033 single-strand binding protein; single-strand binding protein 40506 5677719 Clos_0036 Alkaliphilus oremlandii OhILAs single-strand binding protein YP_001511602.1 40093 D 350688 CDS YP_001511603.1 158319096 5677720 40522..40758 1 NC_009922.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 40758 rpsR 5677720 rpsR Alkaliphilus oremlandii OhILAs 30S ribosomal protein S18 YP_001511603.1 40522 D 350688 CDS YP_001511604.1 158319097 5677721 complement(40868..42715) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0028 ABC transporter, ATP-binding protein, HlyB family; ABC transporter 42715 5677721 Clos_0038 Alkaliphilus oremlandii OhILAs ABC transporter YP_001511604.1 40868 R 350688 CDS YP_001511605.1 158319098 5677722 complement(42696..44522) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE1061 ABC transporter, ATP-binding/permease protein, HlyB family; ABC transporter 44522 5677722 Clos_0039 Alkaliphilus oremlandii OhILAs ABC transporter YP_001511605.1 42696 R 350688 CDS YP_001511606.1 158319099 5677723 complement(44755..45642) 1 NC_009922.1 KEGG: lca:LSEI_2600 predicted signal transduction protein with a C-terminal HATPase domain; signal transduction histidine kinase regulating citrate/malate metabolism 45642 5677723 Clos_0040 Alkaliphilus oremlandii OhILAs signal transduction histidine kinase regulating citrate/malate metabolism YP_001511606.1 44755 R 350688 CDS YP_001511607.1 158319100 5677724 complement(45639..46355) 1 NC_009922.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: tde:TDE0033 DNA-binding response regulator; LytTR family two component transcriptional regulator 46355 5677724 Clos_0041 Alkaliphilus oremlandii OhILAs LytTR family two component transcriptional regulator YP_001511607.1 45639 R 350688 CDS YP_001511608.1 158319101 5677725 46667..47527 1 NC_009922.1 TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding domain protein; KEGG: amt:Amet_1075 shikimate 5-dehydrogenase; shikimate 5-dehydrogenase 47527 5677725 Clos_0042 Alkaliphilus oremlandii OhILAs shikimate 5-dehydrogenase YP_001511608.1 46667 D 350688 CDS YP_001511609.1 158319102 5677726 47677..48093 1 NC_009922.1 KEGG: amt:Amet_0036 conserved hypothetical protein; hypothetical protein 48093 5677726 Clos_0043 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511609.1 47677 D 350688 CDS YP_001511610.1 158319103 5677727 48196..48789 1 NC_009922.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: amt:Amet_0037 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 48789 5677727 Clos_0044 Alkaliphilus oremlandii OhILAs ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_001511610.1 48196 D 350688 CDS YP_001511611.1 158319104 5675874 48996..49571 1 NC_009922.1 TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: amt:Amet_0038 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 49571 5675874 Clos_0045 Alkaliphilus oremlandii OhILAs ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 YP_001511611.1 48996 D 350688 CDS YP_001511612.1 158319105 5675878 complement(55320..55952) 1 NC_009922.1 hypothetical protein 55952 5675878 Clos_0046 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511612.1 55320 R 350688 CDS YP_001511613.1 158319106 5675879 56775..57257 1 NC_009922.1 PFAM: protein of unknown function DUF988; KEGG: amt:Amet_0013 protein of unknown function DUF988; hypothetical protein 57257 5675879 Clos_0047 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511613.1 56775 D 350688 CDS YP_001511614.1 158319107 5676079 57367..59235 1 NC_009922.1 KEGG: cdf:CD2383 putative sigma-54 interacting regulatory protein; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; Propionate catabolism activator domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; putative sigma-54 specific transcriptional regulator 59235 5676079 Clos_0048 Alkaliphilus oremlandii OhILAs putative sigma-54 specific transcriptional regulator YP_001511614.1 57367 D 350688 CDS YP_001511615.1 158319108 5676080 59560..61341 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: cdf:CD2381 indolepyruvate oxidoreductase subunit; thiamine pyrophosphate binding domain-containing protein 61341 5676080 Clos_0049 Alkaliphilus oremlandii OhILAs thiamine pyrophosphate binding domain-containing protein YP_001511615.1 59560 D 350688 CDS YP_001511616.1 158319109 5676081 61343..61933 1 NC_009922.1 Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.; indolepyruvate oxidoreductase subunit beta 61933 5676081 Clos_0050 Alkaliphilus oremlandii OhILAs indolepyruvate oxidoreductase subunit beta YP_001511616.1 61343 D 350688 CDS YP_001511617.1 158319110 5676082 62147..62860 1 NC_009922.1 KEGG: cac:CAC0198 uncharacterized membrane protein, ortholog YyaS Bacillus subtilis; hypothetical protein 62860 5676082 Clos_0051 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511617.1 62147 D 350688 CDS YP_001511618.1 158319111 5675862 68709..70196 1 NC_009922.1 PFAM: chemotaxis sensory transducer; KEGG: amt:Amet_0043 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 70196 5675862 Clos_0052 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer YP_001511618.1 68709 D 350688 CDS YP_001511619.1 158319112 5675863 70382..70693 1 NC_009922.1 PFAM: protein of unknown function DUF156; KEGG: amt:Amet_0044 protein of unknown function DUF156; hypothetical protein 70693 5675863 Clos_0053 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511619.1 70382 D 350688 CDS YP_001511620.1 158319113 5675864 70950..73409 1 NC_009922.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY4510 hypothetical protein; copper-translocating P-type ATPase 73409 5675864 Clos_0054 Alkaliphilus oremlandii OhILAs copper-translocating P-type ATPase YP_001511620.1 70950 D 350688 CDS YP_001511621.1 158319114 5676166 73505..73720 1 NC_009922.1 TIGRFAM: copper ion binding protein; PFAM: Heavy metal transport/detoxification protein; KEGG: amt:Amet_0045 heavy metal transport/detoxification protein; copper ion binding protein 73720 5676166 Clos_0055 Alkaliphilus oremlandii OhILAs copper ion binding protein YP_001511621.1 73505 D 350688 CDS YP_001511622.1 158319115 5676167 73869..76433 1 NC_009922.1 PFAM: helix-turn-helix- domain containing protein AraC type; glycoside hydrolase family 39; KEGG: cbe:Cbei_3047 xylan 1,4-beta-xylosidase; AraC family transcriptional regulator 76433 5676167 Clos_0056 Alkaliphilus oremlandii OhILAs AraC family transcriptional regulator YP_001511622.1 73869 D 350688 CDS YP_001511623.1 158319116 5676168 complement(76529..77548) 1 NC_009922.1 PFAM: aminodeoxychorismate lyase; KEGG: amt:Amet_0046 aminodeoxychorismate lyase; aminodeoxychorismate lyase 77548 5676168 Clos_0057 Alkaliphilus oremlandii OhILAs aminodeoxychorismate lyase YP_001511623.1 76529 R 350688 CDS YP_001511624.1 158319117 5676169 77817..78884 1 NC_009922.1 KEGG: amt:Amet_0311 acyltransferase 3; acyltransferase 3 78884 5676169 Clos_0058 Alkaliphilus oremlandii OhILAs acyltransferase 3 YP_001511624.1 77817 D 350688 CDS YP_001511625.1 158319118 5676170 80271..81719 1 NC_009922.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: amt:Amet_0081 Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase major region 81719 5676170 Clos_0059 Alkaliphilus oremlandii OhILAs Orn/Lys/Arg decarboxylase major region YP_001511625.1 80271 D 350688 CDS YP_001511626.1 158319119 5676171 81740..82372 1 NC_009922.1 PFAM: thymidylate kinase; KEGG: amt:Amet_0082 dTMP kinase; dTMP kinase 82372 5676171 Clos_0060 Alkaliphilus oremlandii OhILAs dTMP kinase YP_001511626.1 81740 D 350688 CDS YP_001511627.1 158319120 5676172 82377..82706 1 NC_009922.1 PFAM: protein of unknown function DUF970; KEGG: amt:Amet_0083 protein of unknown function DUF970; hypothetical protein 82706 5676172 Clos_0061 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511627.1 82377 D 350688 CDS YP_001511628.1 158319121 5676173 82725..83714 1 NC_009922.1 TIGRFAM: DNA polymerase III, delta prime subunit; KEGG: amt:Amet_0084 DNA polymerase III, delta prime subunit; DNA polymerase III, delta prime subunit 83714 5676173 Clos_0062 Alkaliphilus oremlandii OhILAs DNA polymerase III, delta prime subunit YP_001511628.1 82725 D 350688 CDS YP_001511629.1 158319122 5676174 83708..84592 1 NC_009922.1 PFAM: PSP1 domain protein; KEGG: amt:Amet_0085 PSP1 domain protein; PSP1 domain-containing protein 84592 5676174 Clos_0063 Alkaliphilus oremlandii OhILAs PSP1 domain-containing protein YP_001511629.1 83708 D 350688 CDS YP_001511630.1 158319123 5675977 84900..86153 1 NC_009922.1 function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 86153 5675977 Clos_0064 Alkaliphilus oremlandii OhILAs putative oxidoreductase YP_001511630.1 84900 D 350688 CDS YP_001511631.1 158319124 5675978 86842..87948 1 NC_009922.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T 87948 gcvT 5675978 gcvT Alkaliphilus oremlandii OhILAs glycine cleavage system aminomethyltransferase T YP_001511631.1 86842 D 350688 CDS YP_001511632.1 158319125 5675979 87991..88374 1 NC_009922.1 TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: amt:Amet_1355 glycine cleavage system H protein; glycine cleavage system H protein 88374 5675979 Clos_0066 Alkaliphilus oremlandii OhILAs glycine cleavage system H protein YP_001511632.1 87991 D 350688 CDS YP_001511633.1 158319126 5675980 88376..89716 1 NC_009922.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 89716 5675980 Clos_0067 Alkaliphilus oremlandii OhILAs glycine dehydrogenase subunit 1 YP_001511633.1 88376 D 350688 CDS YP_001511634.1 158319127 5675981 89716..91176 1 NC_009922.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 91176 5675981 Clos_0068 Alkaliphilus oremlandii OhILAs glycine dehydrogenase subunit 2 YP_001511634.1 89716 D 350688 CDS YP_001511635.1 158319128 5675982 91313..93415 1 NC_009922.1 PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; KEGG: cdf:CD2732 putative sigma-54-interacting regulatory protein; putative sigma-54 specific transcriptional regulator 93415 5675982 Clos_0069 Alkaliphilus oremlandii OhILAs putative sigma-54 specific transcriptional regulator YP_001511635.1 91313 D 350688 CDS YP_001511636.1 158319129 5675983 93603..95381 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: cdf:CD2381 indolepyruvate oxidoreductase subunit; indolepyruvate ferredoxin oxidoreductase 95381 5675983 Clos_0070 Alkaliphilus oremlandii OhILAs indolepyruvate ferredoxin oxidoreductase YP_001511636.1 93603 D 350688 CDS YP_001511637.1 158319130 5676413 95383..95961 1 NC_009922.1 Involved in the incorporation of exogenous aryl acids in the biosynthesis of aromatic amino acids: catalysis of the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.; indolepyruvate oxidoreductase subunit beta 95961 5676413 Clos_0071 Alkaliphilus oremlandii OhILAs indolepyruvate oxidoreductase subunit beta YP_001511637.1 95383 D 350688 CDS YP_001511638.1 158319131 5676414 95997..97061 1 NC_009922.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 97061 5676414 Clos_0072 Alkaliphilus oremlandii OhILAs butyrate kinase YP_001511638.1 95997 D 350688 CDS YP_001511639.1 158319132 5676415 97091..98206 1 NC_009922.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: chy:CHY_1929 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase 98206 5676415 Clos_0073 Alkaliphilus oremlandii OhILAs histidinol-phosphate aminotransferase YP_001511639.1 97091 D 350688 CDS YP_001511640.1 158319133 5676416 98781..99974 1 NC_009922.1 TIGRFAM: PAS sensor protein; KEGG: mta:Moth_1931 hypothetical protein; putative PAS/PAC sensor protein 99974 5676416 Clos_0074 Alkaliphilus oremlandii OhILAs putative PAS/PAC sensor protein YP_001511640.1 98781 D 350688 CDS YP_001511641.1 158319134 5676417 100086..100802 1 NC_009922.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cth:Cthe_1959 methyltransferase type 11; methyltransferase type 11 100802 5676417 Clos_0075 Alkaliphilus oremlandii OhILAs methyltransferase type 11 YP_001511641.1 100086 D 350688 CDS YP_001511642.1 158319135 5676418 100814..101692 1 NC_009922.1 KEGG: amt:Amet_1860 hypothetical protein; hypothetical protein 101692 5676418 Clos_0076 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511642.1 100814 D 350688 CDS YP_001511643.1 158319136 5676419 complement(101842..102444) 1 NC_009922.1 PFAM: pentapeptide repeat protein; KEGG: mba:Mbar_A3729 hypothetical protein; pentapeptide repeat-containing protein 102444 5676419 Clos_0077 Alkaliphilus oremlandii OhILAs pentapeptide repeat-containing protein YP_001511643.1 101842 R 350688 CDS YP_001511644.1 158319137 5676420 103112..104008 1 NC_009922.1 KEGG: cbo:CBO1621 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 104008 5676420 Clos_0078 Alkaliphilus oremlandii OhILAs 5,10-methylenetetrahydrofolate reductase YP_001511644.1 103112 D 350688 CDS YP_001511645.1 158319138 5676421 104052..104723 1 NC_009922.1 PFAM: Vitamin B12 dependent methionine synthase activation region; KEGG: cbe:Cbei_1401 vitamin B12 dependent methionine synthase, activation region; vitamin B12 dependent methionine synthase activation region 104723 5676421 Clos_0079 Alkaliphilus oremlandii OhILAs vitamin B12 dependent methionine synthase activation region YP_001511645.1 104052 D 350688 CDS YP_001511646.1 158319139 5677682 104803..107181 1 NC_009922.1 PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: cbo:CBO1623 methionine synthase; homocysteine S-methyltransferase 107181 5677682 Clos_0080 Alkaliphilus oremlandii OhILAs homocysteine S-methyltransferase YP_001511646.1 104803 D 350688 CDS YP_001511647.1 158319140 5677683 complement(107279..108595) 1 NC_009922.1 KEGG: bld:BLi03495 YvqG; hypothetical protein 108595 5677683 Clos_0081 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511647.1 107279 R 350688 CDS YP_001511648.1 158319141 5677684 complement(108588..108908) 1 NC_009922.1 PFAM: transcriptional regulator PadR family protein; KEGG: cac:CAC0571 predicted transcriptional regulator; PadR-like family transcriptional regulator 108908 5677684 Clos_0082 Alkaliphilus oremlandii OhILAs PadR-like family transcriptional regulator YP_001511648.1 108588 R 350688 CDS YP_001511649.1 158319142 5677685 complement(109064..109999) 1 NC_009922.1 PFAM: alpha/beta hydrolase fold; KEGG: amt:Amet_0462 alpha/beta hydrolase fold; alpha/beta hydrolase 109999 5677685 Clos_0083 Alkaliphilus oremlandii OhILAs alpha/beta hydrolase YP_001511649.1 109064 R 350688 CDS YP_001511650.1 158319143 5677686 110205..111383 1 NC_009922.1 KEGG: cbe:Cbei_0411 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 111383 5677686 Clos_0084 Alkaliphilus oremlandii OhILAs acetyl-CoA acetyltransferase YP_001511650.1 110205 D 350688 CDS YP_001511651.1 158319144 5677687 111488..112957 1 NC_009922.1 KEGG: amt:Amet_4533 sigma54 specific transcriptional regulator, Fis family; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; PAS modulated sigma54 specific transcriptional regulator 112957 5677687 Clos_0085 Alkaliphilus oremlandii OhILAs PAS modulated sigma54 specific transcriptional regulator YP_001511651.1 111488 D 350688 CDS YP_001511652.1 158319145 5677688 113253..114806 1 NC_009922.1 PFAM: coenzyme A transferase; KEGG: amt:Amet_4532 coenzyme A transferase; coenzyme A transferase 114806 5677688 Clos_0086 Alkaliphilus oremlandii OhILAs coenzyme A transferase YP_001511652.1 113253 D 350688 CDS YP_001511653.1 158319146 5677689 114821..116137 1 NC_009922.1 PFAM: Gluconate transporter; Citrate transporter; KEGG: amt:Amet_4531 citrate transporter; citrate transporter 116137 5677689 Clos_0087 Alkaliphilus oremlandii OhILAs citrate transporter YP_001511653.1 114821 D 350688 CDS YP_001511654.1 158319147 5677690 116245..117087 1 NC_009922.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 117087 5677690 Clos_0088 Alkaliphilus oremlandii OhILAs 3-hydroxybutyryl-CoA dehydrogenase YP_001511654.1 116245 D 350688 CDS YP_001511655.1 158319148 5677517 117132..117872 1 NC_009922.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: amt:Amet_4631 3-oxoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR 117872 5677517 Clos_0089 Alkaliphilus oremlandii OhILAs short-chain dehydrogenase/reductase SDR YP_001511655.1 117132 D 350688 CDS YP_001511656.1 158319149 5677518 118268..118684 1 NC_009922.1 PFAM: MaoC domain protein dehydratase; KEGG: cbe:Cbei_3349 MaoC domain protein dehydratase; dehydratase 118684 5677518 Clos_0090 Alkaliphilus oremlandii OhILAs dehydratase YP_001511656.1 118268 D 350688 CDS YP_001511657.1 158319150 5677519 118721..119860 1 NC_009922.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: amt:Amet_3091 acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein 119860 5677519 Clos_0091 Alkaliphilus oremlandii OhILAs acyl-CoA dehydrogenase domain-containing protein YP_001511657.1 118721 D 350688 CDS YP_001511658.1 158319151 5677520 119874..120656 1 NC_009922.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: amt:Amet_3090 electron transfer flavoprotein, alpha/beta-subunit-like protein; electron transfer flavoprotein alpha/beta-subunit 120656 5677520 Clos_0092 Alkaliphilus oremlandii OhILAs electron transfer flavoprotein alpha/beta-subunit YP_001511658.1 119874 D 350688 CDS YP_001511659.1 158319152 5677521 120671..121672 1 NC_009922.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: amt:Amet_3089 electron transfer flavoprotein, alpha/beta-subunit-like protein; electron transfer flavoprotein alpha subunit 121672 5677521 Clos_0093 Alkaliphilus oremlandii OhILAs electron transfer flavoprotein alpha subunit YP_001511659.1 120671 D 350688 CDS YP_001511660.1 158319153 5677522 complement(121751..122512) 1 NC_009922.1 KEGG: drm:Dred_2831 hypothetical protein; hypothetical protein 122512 5677522 Clos_0094 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511660.1 121751 R 350688 CDS YP_001511661.1 158319154 5677523 122783..123481 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dsy:DSY1106 hypothetical protein; two component transcriptional regulator 123481 5677523 Clos_0095 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001511661.1 122783 D 350688 CDS YP_001511662.1 158319155 5677524 123483..124874 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cbo:CBO0353 two-component sensor kinase; integral membrane sensor signal transduction histidine kinase 124874 5677524 Clos_0096 Alkaliphilus oremlandii OhILAs integral membrane sensor signal transduction histidine kinase YP_001511662.1 123483 D 350688 CDS YP_001511663.1 158319156 5677525 124875..126443 1 NC_009922.1 KEGG: dsy:DSY1108 hypothetical protein; hypothetical protein 126443 5677525 Clos_0097 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511663.1 124875 D 350688 CDS YP_001511664.1 158319157 5677012 complement(126494..126823) 1 NC_009922.1 KEGG: amt:Amet_1370 collagen triple helix repeat; hypothetical protein 126823 5677012 Clos_0098 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511664.1 126494 R 350688 CDS YP_001511665.1 158319158 5677013 127238..128383 1 NC_009922.1 PFAM: Collagen triple helix repeat; KEGG: bat:BAS1130 hypothetical protein; triple helix repeat-containing collagen 128383 5677013 Clos_0099 Alkaliphilus oremlandii OhILAs triple helix repeat-containing collagen YP_001511665.1 127238 D 350688 CDS YP_001511666.1 158319159 5677014 128668..129990 1 NC_009922.1 PFAM: Collagen triple helix repeat; KEGG: cdf:CD3349 putative exosporium glycoprotein; triple helix repeat-containing collagen 129990 5677014 Clos_0100 Alkaliphilus oremlandii OhILAs triple helix repeat-containing collagen YP_001511666.1 128668 D 350688 CDS YP_001511667.1 158319160 5677015 complement(130105..131661) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC00588 ABC transporter ATP-binding protein; ABC transporter 131661 5677015 Clos_0101 Alkaliphilus oremlandii OhILAs ABC transporter YP_001511667.1 130105 R 350688 CDS YP_001511668.1 158319161 5677016 131995..132576 1 NC_009922.1 hypothetical protein 132576 5677016 Clos_0102 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511668.1 131995 D 350688 CDS YP_001511669.1 158319162 5677018 132953..133138 1 NC_009922.1 KEGG: cpf:CPF_1134 hypothetical protein; hypothetical protein 133138 5677018 Clos_0104 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511669.1 132953 D 350688 CDS YP_001511670.1 158319163 5677020 134093..134617 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ssa:SSA_1986 acetyltransferase, GNAT family, putative; N-acetyltransferase GCN5 134617 5677020 Clos_0106 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001511670.1 134093 D 350688 CDS YP_001511671.1 158319164 5676764 135053..135859 1 NC_009922.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cpr:CPR_0075 putative methyltransferase; methyltransferase type 11 135859 5676764 Clos_0107 Alkaliphilus oremlandii OhILAs methyltransferase type 11 YP_001511671.1 135053 D 350688 CDS YP_001511672.1 158319165 5676765 135971..136771 1 NC_009922.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cdf:CD1963 hypothetical protein; methyltransferase type 11 136771 5676765 Clos_0108 Alkaliphilus oremlandii OhILAs methyltransferase type 11 YP_001511672.1 135971 D 350688 CDS YP_001511673.1 158319166 5676766 136997..137758 1 NC_009922.1 PFAM: Methyltransferase type 11; KEGG: fnu:FN0736 methyltransferase; methyltransferase type 11 137758 5676766 Clos_0109 Alkaliphilus oremlandii OhILAs methyltransferase type 11 YP_001511673.1 136997 D 350688 CDS YP_001511674.1 158319167 5676767 137869..138432 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: csc:Csac_0988 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 138432 5676767 Clos_0110 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001511674.1 137869 D 350688 CDS YP_001511675.1 158319168 5676768 138904..139443 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cbo:CBO0859 acetyltransferase; N-acetyltransferase GCN5 139443 5676768 Clos_0111 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001511675.1 138904 D 350688 CDS YP_001511676.1 158319169 5676769 139518..139865 1 NC_009922.1 KEGG: oih:OB0254 hypothetical protein; hypothetical protein 139865 5676769 Clos_0112 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511676.1 139518 D 350688 CDS YP_001511677.1 158319170 5676770 140125..140862 1 NC_009922.1 PFAM: peptidase S51 dipeptidase E; KEGG: tte:TTE2723 peptidase E; peptidase S51 dipeptidase E 140862 5676770 Clos_0113 Alkaliphilus oremlandii OhILAs peptidase S51 dipeptidase E YP_001511677.1 140125 D 350688 CDS YP_001511678.1 158319171 5676771 141101..141568 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: vvy:VV1879 putative acetyltransferase; N-acetyltransferase GCN5 141568 5676771 Clos_0114 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001511678.1 141101 D 350688 CDS YP_001511679.1 158319172 5676772 141676..142506 1 NC_009922.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: cpf:CPF_2402 hypothetical protein; phosphotransferase domain-containing protein 142506 5676772 Clos_0115 Alkaliphilus oremlandii OhILAs phosphotransferase domain-containing protein YP_001511679.1 141676 D 350688 CDS YP_001511680.1 158319173 5676477 142874..143401 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: amt:Amet_2241 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 143401 5676477 Clos_0116 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001511680.1 142874 D 350688 CDS YP_001511681.1 158319174 5676479 143865..144395 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: fnu:FN0657 acetyltransferase; N-acetyltransferase GCN5 144395 5676479 Clos_0118 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001511681.1 143865 D 350688 CDS YP_001511682.1 158319175 5676480 144576..145385 1 NC_009922.1 KEGG: amt:Amet_2249 hypothetical protein; hypothetical protein 145385 5676480 Clos_0119 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511682.1 144576 D 350688 CDS YP_001511683.1 158319176 5676481 145638..146162 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: oih:OB0365 hypothetical protein; N-acetyltransferase GCN5 146162 5676481 Clos_0120 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001511683.1 145638 D 350688 CDS YP_001511684.1 158319177 5676482 146380..147075 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ctc:CTC00163 transcriptional regulatory protein; two component transcriptional regulator 147075 5676482 Clos_0121 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001511684.1 146380 D 350688 CDS YP_001511685.1 158319178 5676483 147165..148088 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC00162 ABC-type multidrug transport system; ABC transporter 148088 5676483 Clos_0122 Alkaliphilus oremlandii OhILAs ABC transporter YP_001511685.1 147165 D 350688 CDS YP_001511686.1 158319179 5676484 148081..148833 1 NC_009922.1 KEGG: ctc:CTC00160 putative ABC-2 type transport system permease protein; putative ABC-2 type transport system permease protein 148833 5676484 Clos_0123 Alkaliphilus oremlandii OhILAs putative ABC-2 type transport system permease protein YP_001511686.1 148081 D 350688 CDS YP_001511687.1 158319180 5676485 148866..149789 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: ctc:CTC00159 sensory transduction protein kinase; histidine kinase 149789 5676485 Clos_0124 Alkaliphilus oremlandii OhILAs histidine kinase YP_001511687.1 148866 D 350688 CDS YP_001511688.1 158319181 5677904 150210..151253 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: efa:EF2082 ABC transporter, ATP-binding protein; ABC transporter 151253 5677904 Clos_0125 Alkaliphilus oremlandii OhILAs ABC transporter YP_001511688.1 150210 D 350688 CDS YP_001511689.1 158319182 5677905 151237..151917 1 NC_009922.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_3893 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 151917 5677905 Clos_0126 Alkaliphilus oremlandii OhILAs binding-protein-dependent transport system inner membrane protein YP_001511689.1 151237 D 350688 CDS YP_001511690.1 158319183 5677906 152104..153345 1 NC_009922.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 153345 proA 5677906 proA Alkaliphilus oremlandii OhILAs gamma-glutamyl phosphate reductase YP_001511690.1 152104 D 350688 CDS YP_001511691.1 158319184 5677907 153359..154150 1 NC_009922.1 KEGG: amt:Amet_3645 glutamate 5-kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; glutamate 5-kinase 154150 5677907 Clos_0128 Alkaliphilus oremlandii OhILAs glutamate 5-kinase YP_001511691.1 153359 D 350688 CDS YP_001511692.1 158319185 5677908 154161..154982 1 NC_009922.1 KEGG: amt:Amet_2533 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; pyrroline-5-carboxylate reductase 154982 5677908 Clos_0129 Alkaliphilus oremlandii OhILAs pyrroline-5-carboxylate reductase YP_001511692.1 154161 D 350688 CDS YP_001511693.1 158319186 5677909 155211..155720 1 NC_009922.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 S26A and S26B; KEGG: amt:Amet_3647 signal peptidase I; signal peptidase I 155720 5677909 Clos_0130 Alkaliphilus oremlandii OhILAs signal peptidase I YP_001511693.1 155211 D 350688 CDS YP_001511694.1 158319187 5677910 155789..156052 1 NC_009922.1 hypothetical protein 156052 5677910 Clos_0131 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511694.1 155789 D 350688 CDS YP_001511695.1 158319188 5677911 156096..157115 1 NC_009922.1 KEGG: cth:Cthe_0744 copper amine oxidase-like protein; hypothetical protein 157115 5677911 Clos_0132 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511695.1 156096 D 350688 CDS YP_001511696.1 158319189 5677912 157376..158254 1 NC_009922.1 PFAM: Radical SAM domain protein; KEGG: cbo:CBO1067 cofactor modifying protein; radical SAM domain-containing protein 158254 5677912 Clos_0133 Alkaliphilus oremlandii OhILAs radical SAM domain-containing protein YP_001511696.1 157376 D 350688 CDS YP_001511697.1 158319190 5678456 158312..158860 1 NC_009922.1 PFAM: isochorismatase hydrolase; KEGG: swo:Swol_1215 isochorismatase family protein; isochorismatase hydrolase 158860 5678456 Clos_0134 Alkaliphilus oremlandii OhILAs isochorismatase hydrolase YP_001511697.1 158312 D 350688 CDS YP_001511698.1 158319191 5678457 158948..159727 1 NC_009922.1 PFAM: protein of unknown function DUF975; KEGG: cth:Cthe_3044 protein of unknown function DUF975; hypothetical protein 159727 5678457 Clos_0135 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511698.1 158948 D 350688 CDS YP_001511699.1 158319192 5678458 159755..160198 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: amt:Amet_2950 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 160198 5678458 Clos_0136 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001511699.1 159755 D 350688 CDS YP_001511700.1 158319193 5678459 160405..162681 1 NC_009922.1 PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: amt:Amet_2822 ATPase AAA-2 domain protein; ATPase 162681 5678459 Clos_0137 Alkaliphilus oremlandii OhILAs ATPase YP_001511700.1 160405 D 350688 CDS YP_001511701.1 158319194 5678460 162771..163502 1 NC_009922.1 KEGG: ctc:CTC00445 putative metal dependent hydrolase; putative metal dependent hydrolase 163502 5678460 Clos_0138 Alkaliphilus oremlandii OhILAs putative metal dependent hydrolase YP_001511701.1 162771 D 350688 CDS YP_001511702.1 158319195 5678461 163818..165038 1 NC_009922.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: cth:Cthe_1485 beta-lactamase-like protein; beta-lactamase domain-containing protein 165038 5678461 Clos_0139 Alkaliphilus oremlandii OhILAs beta-lactamase domain-containing protein YP_001511702.1 163818 D 350688 CDS YP_001511703.1 158319196 5678462 165293..166621 1 NC_009922.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: amt:Amet_1556 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 166621 5678462 Clos_0140 Alkaliphilus oremlandii OhILAs RND family efflux transporter MFP subunit YP_001511703.1 165293 D 350688 CDS YP_001511704.1 158319197 5678463 166614..167306 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1555 ABC transporter related; ABC transporter 167306 5678463 Clos_0141 Alkaliphilus oremlandii OhILAs ABC transporter YP_001511704.1 166614 D 350688 CDS YP_001511705.1 158319198 5678464 167306..168517 1 NC_009922.1 PFAM: protein of unknown function DUF214; KEGG: amt:Amet_1554 protein of unknown function DUF214; hypothetical protein 168517 5678464 Clos_0142 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511705.1 167306 D 350688 CDS YP_001511706.1 158319199 5678495 168749..170329 1 NC_009922.1 PFAM: Alkaline phosphatase; KEGG: dsy:DSY4404 hypothetical protein; alkaline phosphatase 170329 5678495 Clos_0143 Alkaliphilus oremlandii OhILAs alkaline phosphatase YP_001511706.1 168749 D 350688 CDS YP_001511707.1 158319200 5678496 170419..171555 1 NC_009922.1 PFAM: YibE/F family protein; KEGG: dsy:DSY4405 hypothetical protein; hypothetical protein 171555 5678496 Clos_0144 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511707.1 170419 D 350688 CDS YP_001511708.1 158319201 5678497 complement(171683..172210) 1 NC_009922.1 TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylguanine DNA methyltransferase ribonuclease domain protein; Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; KEGG: dsy:DSY4761 hypothetical protein; methylated-DNA--protein-cysteine methyltransferase 172210 5678497 Clos_0145 Alkaliphilus oremlandii OhILAs methylated-DNA--protein-cysteine methyltransferase YP_001511708.1 171683 R 350688 CDS YP_001511709.1 158319202 5678498 complement(172222..173679) 1 NC_009922.1 PFAM: helix-turn-helix- domain containing protein AraC type; HhH-GPD family protein; Ada metal-binding domain protein; AlkA domain protein; KEGG: hch:HCH_04648 adenosine deaminase; AraC family transcriptional regulator 173679 5678498 Clos_0146 Alkaliphilus oremlandii OhILAs AraC family transcriptional regulator YP_001511709.1 172222 R 350688 CDS YP_001511710.1 158319203 5678499 173999..175237 1 NC_009922.1 PFAM: Domain of unknown function DUF1858; KEGG: tde:TDE0477 hypothetical protein; hypothetical protein 175237 5678499 Clos_0147 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511710.1 173999 D 350688 CDS YP_001511711.1 158319204 5678500 175250..175951 1 NC_009922.1 PFAM: cobalamin synthesis protein P47K; KEGG: tde:TDE0476 hypothetical protein; cobalamin synthesis protein P47K 175951 5678500 Clos_0148 Alkaliphilus oremlandii OhILAs cobalamin synthesis protein P47K YP_001511711.1 175250 D 350688 CDS YP_001511712.1 158319205 5678501 175944..176936 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0475 ABC transporter, ATP-binding protein; ABC transporter 176936 5678501 Clos_0149 Alkaliphilus oremlandii OhILAs ABC transporter YP_001511712.1 175944 D 350688 CDS YP_001511713.1 158319206 5678502 complement(177882..178343) 1 NC_009922.1 hypothetical protein 178343 5678502 Clos_0150 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511713.1 177882 R 350688 CDS YP_001511714.1 158319207 5678503 179268..179558 1 NC_009922.1 PFAM: transposase IS3/IS911 family protein; KEGG: amt:Amet_4732 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 179558 5678503 Clos_0151 Alkaliphilus oremlandii OhILAs transposase IS3/IS911 family protein YP_001511714.1 179268 D 350688 CDS YP_001511715.1 158319208 5678675 179561..180394 1 NC_009922.1 PFAM: Integrase catalytic region; KEGG: bcz:pE33L466_0288 transposase; integrase catalytic region 180394 5678675 Clos_0152 Alkaliphilus oremlandii OhILAs integrase catalytic region YP_001511715.1 179561 D 350688 CDS YP_001511716.1 158319209 5678677 complement(182201..182716) 1 NC_009922.1 hypothetical protein 182716 5678677 Clos_0154 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511716.1 182201 R 350688 CDS YP_001511717.1 158319210 5678678 complement(182864..183445) 1 NC_009922.1 PFAM: cell wall hydrolase/autolysin; KEGG: bha:BH0966 N-acetylmuramoyl-L-alanine amidase (sporulation mother cell wall hydrolase); cell wall hydrolase/autolysin 183445 5678678 Clos_0155 Alkaliphilus oremlandii OhILAs cell wall hydrolase/autolysin YP_001511717.1 182864 R 350688 CDS YP_001511718.1 158319211 5678679 complement(183592..183831) 1 NC_009922.1 KEGG: cbo:CBO0746 phage related protein; phage-like protein 183831 5678679 Clos_0156 Alkaliphilus oremlandii OhILAs phage-like protein YP_001511718.1 183592 R 350688 CDS YP_001511719.1 158319212 5678680 184379..184906 1 NC_009922.1 KEGG: btk:BT9727_0859 possible RNA polymerase sigma-B factor (sigma-37) (general stress protein84) (GSP84); FliA/WhiG family RNA polymerase sigma 28 subunit 184906 5678680 Clos_0157 Alkaliphilus oremlandii OhILAs FliA/WhiG family RNA polymerase sigma 28 subunit YP_001511719.1 184379 D 350688 CDS YP_001511720.1 158319213 5678681 184934..185185 1 NC_009922.1 hypothetical protein 185185 5678681 Clos_0158 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511720.1 184934 D 350688 CDS YP_001511721.1 158319214 5678682 185487..186395 1 NC_009922.1 hypothetical protein 186395 5678682 Clos_0159 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511721.1 185487 D 350688 CDS YP_001511722.1 158319215 5678683 complement(186443..186988) 1 NC_009922.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: Animal peptidoglycan recognition protein PGRP; KEGG: dme:Dmel_CG14745 PGRP-SC2; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 186988 5678683 Clos_0160 Alkaliphilus oremlandii OhILAs N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_001511722.1 186443 R 350688 CDS YP_001511723.1 158319216 5678277 complement(187114..188658) 1 NC_009922.1 KEGG: amt:Amet_2147 hypothetical protein; hypothetical protein 188658 5678277 Clos_0161 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511723.1 187114 R 350688 CDS YP_001511724.1 158319217 5678278 complement(188697..189047) 1 NC_009922.1 KEGG: amt:Amet_2148 hypothetical protein; hypothetical protein 189047 5678278 Clos_0162 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511724.1 188697 R 350688 CDS YP_001511725.1 158319218 5678279 complement(189048..189593) 1 NC_009922.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: amt:Amet_2149 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 189593 5678279 Clos_0163 Alkaliphilus oremlandii OhILAs ECF subfamily RNA polymerase sigma-24 factor YP_001511725.1 189048 R 350688 CDS YP_001511726.1 158319219 5678280 complement(189776..190159) 1 NC_009922.1 KEGG: cth:Cthe_3195 hypothetical protein; hypothetical protein 190159 5678280 Clos_0164 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511726.1 189776 R 350688 CDS YP_001511727.1 158319220 5678281 190843..191646 1 NC_009922.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: cdf:CD0800 3-hydroxybutyryl-CoA dehydratase (crotonase); enoyl-CoA hydratase/isomerase 191646 5678281 Clos_0165 Alkaliphilus oremlandii OhILAs enoyl-CoA hydratase/isomerase YP_001511727.1 190843 D 350688 CDS YP_001511728.1 158319221 5678282 191742..193046 1 NC_009922.1 PFAM: Gluconate transporter; Citrate transporter; KEGG: cdf:CD0801 probable permease; citrate transporter 193046 5678282 Clos_0166 Alkaliphilus oremlandii OhILAs citrate transporter YP_001511728.1 191742 D 350688 CDS YP_001511729.1 158319222 5678283 193118..194677 1 NC_009922.1 PFAM: coenzyme A transferase; KEGG: amt:Amet_4532 coenzyme A transferase; coenzyme A transferase 194677 5678283 Clos_0167 Alkaliphilus oremlandii OhILAs coenzyme A transferase YP_001511729.1 193118 D 350688 CDS YP_001511730.1 158319223 5678284 194763..195899 1 NC_009922.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: cdf:CD0803 putative acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 195899 5678284 Clos_0168 Alkaliphilus oremlandii OhILAs acyl-CoA dehydrogenase domain-containing protein YP_001511730.1 194763 D 350688 CDS YP_001511731.1 158319224 5678285 195910..196704 1 NC_009922.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: cdf:CD0804 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein alpha/beta-subunit 196704 5678285 Clos_0169 Alkaliphilus oremlandii OhILAs electron transfer flavoprotein alpha/beta-subunit YP_001511731.1 195910 D 350688 CDS YP_001511732.1 158319225 5676104 196720..197760 1 NC_009922.1 PFAM: thiamine pyrophosphate protein central region; Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: cdf:CD0805 electron transfer flavoprotein alpha-subunit; electron transfer flavoprotein alpha subunit 197760 5676104 Clos_0170 Alkaliphilus oremlandii OhILAs electron transfer flavoprotein alpha subunit YP_001511732.1 196720 D 350688 CDS YP_001511733.1 158319226 5676105 197954..199363 1 NC_009922.1 KEGG: cdf:CD0806 putative sigma-54-dependent transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; PAS modulated sigma54 specific transcriptional regulator 199363 5676105 Clos_0171 Alkaliphilus oremlandii OhILAs PAS modulated sigma54 specific transcriptional regulator YP_001511733.1 197954 D 350688 CDS YP_001511734.1 158319227 5676106 199594..200520 1 NC_009922.1 KEGG: cbo:CBO0408 hypothetical protein; hypothetical protein 200520 5676106 Clos_0172 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511734.1 199594 D 350688 CDS YP_001511735.1 158319228 5676107 complement(200611..202155) 1 NC_009922.1 PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cth:Cthe_1461 FAD dependent oxidoreductase; FAD dependent oxidoreductase 202155 5676107 Clos_0173 Alkaliphilus oremlandii OhILAs FAD dependent oxidoreductase YP_001511735.1 200611 R 350688 CDS YP_001511736.1 158319229 5676108 complement(202200..203192) 1 NC_009922.1 KEGG: amt:Amet_3459 conserved hypothetical protein; hypothetical protein 203192 5676108 Clos_0174 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511736.1 202200 R 350688 CDS YP_001511737.1 158319230 5676109 complement(203439..204023) 1 NC_009922.1 KEGG: cth:Cthe_1434 hypothetical protein; hypothetical protein 204023 5676109 Clos_0175 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511737.1 203439 R 350688 CDS YP_001511738.1 158319231 5676110 204351..206003 1 NC_009922.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 206003 5676110 Clos_0176 Alkaliphilus oremlandii OhILAs glutaminyl-tRNA synthetase YP_001511738.1 204351 D 350688 CDS YP_001511739.1 158319232 5676111 206127..207506 1 NC_009922.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cno:NT01CX_0285 MATE efflux family protein; MATE efflux family protein 207506 5676111 Clos_0177 Alkaliphilus oremlandii OhILAs MATE efflux family protein YP_001511739.1 206127 D 350688 CDS YP_001511740.1 158319233 5676112 207679..209163 1 NC_009922.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: shn:Shewana3_4004 flavocytochrome c; flavocytochrome c 209163 5676112 Clos_0178 Alkaliphilus oremlandii OhILAs flavocytochrome c YP_001511740.1 207679 D 350688 CDS YP_001511741.1 158319234 5676024 209304..211046 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase internal region; KEGG: ctc:CTC01848 two-component sensor kinase YesM; integral membrane sensor signal transduction histidine kinase 211046 5676024 Clos_0179 Alkaliphilus oremlandii OhILAs integral membrane sensor signal transduction histidine kinase YP_001511741.1 209304 D 350688 CDS YP_001511742.1 158319235 5676025 211099..211860 1 NC_009922.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: amt:Amet_1138 response regulator receiver protein; two component AraC family transcriptional regulator 211860 5676025 Clos_0180 Alkaliphilus oremlandii OhILAs two component AraC family transcriptional regulator YP_001511742.1 211099 D 350688 CDS YP_001511743.1 158319236 5676026 complement(211938..212342) 1 NC_009922.1 PFAM: protein of unknown function DUF583; KEGG: amt:Amet_3153 protein of unknown function DUF583; hypothetical protein 212342 5676026 Clos_0181 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511743.1 211938 R 350688 CDS YP_001511744.1 158319237 5676027 complement(212378..213334) 1 NC_009922.1 PFAM: peptidase M23B; KEGG: amt:Amet_3152 peptidase M23B; peptidase M23B 213334 5676027 Clos_0182 Alkaliphilus oremlandii OhILAs peptidase M23B YP_001511744.1 212378 R 350688 CDS YP_001511745.1 158319238 5676028 213640..214485 1 NC_009922.1 PFAM: extracellular solute-binding protein family 3; KEGG: cbo:CBO2018 probable amino acid ABC transporter, substrate-binding protein; extracellular solute-binding protein 214485 5676028 Clos_0183 Alkaliphilus oremlandii OhILAs extracellular solute-binding protein YP_001511745.1 213640 D 350688 CDS YP_001511746.1 158319239 5676029 214522..215202 1 NC_009922.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbo:CBO2017 probable amino acid ABC transporter, permease protein; polar amino acid ABC transporter inner membrane subunit 215202 5676029 Clos_0184 Alkaliphilus oremlandii OhILAs polar amino acid ABC transporter inner membrane subunit YP_001511746.1 214522 D 350688 CDS YP_001511747.1 158319240 5676030 215195..215917 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: chy:CHY_0506 glutamine ABC transporter, ATP-binding protein; ABC transporter 215917 5676030 Clos_0185 Alkaliphilus oremlandii OhILAs ABC transporter YP_001511747.1 215195 D 350688 CDS YP_001511748.1 158319241 5676031 216167..217768 1 NC_009922.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY0350 hypothetical protein; methyl-accepting chemotaxis sensory transducer 217768 5676031 Clos_0186 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer YP_001511748.1 216167 D 350688 CDS YP_001511749.1 158319242 5676032 218083..219456 1 NC_009922.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: tte:TTE0717 NtrC family transcriptional regulator, ATPase domain; putative sigma-54 specific transcriptional regulator 219456 5676032 Clos_0187 Alkaliphilus oremlandii OhILAs putative sigma-54 specific transcriptional regulator YP_001511749.1 218083 D 350688 CDS YP_001511750.1 158319243 5676346 219725..221104 1 NC_009922.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: cbo:CBO1101 sodium:alanine symporter; amino acid carrier protein 221104 5676346 Clos_0188 Alkaliphilus oremlandii OhILAs amino acid carrier protein YP_001511750.1 219725 D 350688 CDS YP_001511751.1 158319244 5676347 221140..222786 1 NC_009922.1 PFAM: peptidase M20; KEGG: cac:CAC0367 arginine degradation protein (gene RocB); peptidase M20 222786 5676347 Clos_0189 Alkaliphilus oremlandii OhILAs peptidase M20 YP_001511751.1 221140 D 350688 CDS YP_001511752.1 158319245 5676348 223014..223736 1 NC_009922.1 PFAM: AzlC family protein; KEGG: dsy:DSY2398 hypothetical protein; AzlC family protein 223736 5676348 Clos_0190 Alkaliphilus oremlandii OhILAs AzlC family protein YP_001511752.1 223014 D 350688 CDS YP_001511753.1 158319246 5676349 223726..224061 1 NC_009922.1 PFAM: branched-chain amino acid transport; KEGG: bsu:BG11916 branched-chain amino acid transport protein; branched-chain amino acid transport 224061 5676349 Clos_0191 Alkaliphilus oremlandii OhILAs branched-chain amino acid transport YP_001511753.1 223726 D 350688 CDS YP_001511754.1 158319247 5676350 224176..224319 1 NC_009922.1 hypothetical protein 224319 5676350 Clos_0192 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511754.1 224176 D 350688 CDS YP_001511755.1 158319248 5676351 224561..225601 1 NC_009922.1 PFAM: S-layer domain protein; KEGG: drm:Dred_3091 Ig family protein; S-layer domain-containing protein 225601 5676351 Clos_0193 Alkaliphilus oremlandii OhILAs S-layer domain-containing protein YP_001511755.1 224561 D 350688 CDS YP_001511756.1 158319249 5676352 225648..226670 1 NC_009922.1 PFAM: S-layer domain protein; KEGG: swo:Swol_1189 hypothetical protein; S-layer domain-containing protein 226670 5676352 Clos_0194 Alkaliphilus oremlandii OhILAs S-layer domain-containing protein YP_001511756.1 225648 D 350688 CDS YP_001511757.1 158319250 5676353 226698..227705 1 NC_009922.1 PFAM: transport system permease protein; KEGG: swo:Swol_1473 iron(III) ABC transporter, permease protein; transport system permease protein 227705 5676353 Clos_0195 Alkaliphilus oremlandii OhILAs transport system permease protein YP_001511757.1 226698 D 350688 CDS YP_001511758.1 158319251 5676354 227696..228511 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_1472 iron(III) ABC transporter, ATP-binding protein; ABC transporter 228511 5676354 Clos_0196 Alkaliphilus oremlandii OhILAs ABC transporter YP_001511758.1 227696 D 350688 CDS YP_001511759.1 158319252 5677132 228538..229623 1 NC_009922.1 PFAM: periplasmic binding protein; KEGG: swo:Swol_2486 ferrichrome-binding periplasmic protein; periplasmic binding protein 229623 5677132 Clos_0197 Alkaliphilus oremlandii OhILAs periplasmic binding protein YP_001511759.1 228538 D 350688 CDS YP_001511760.1 158319253 5677133 229637..230386 1 NC_009922.1 KEGG: swo:Swol_2485 hypothetical protein; hypothetical protein 230386 5677133 Clos_0198 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511760.1 229637 D 350688 CDS YP_001511761.1 158319254 5677134 230410..231870 1 NC_009922.1 PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: tte:TTE2001 predicted dehydrogenase; FAD dependent oxidoreductase 231870 5677134 Clos_0199 Alkaliphilus oremlandii OhILAs FAD dependent oxidoreductase YP_001511761.1 230410 D 350688 CDS YP_001511762.1 158319255 5677137 233636..234637 1 NC_009922.1 PFAM: protein of unknown function DUF534; KEGG: dsy:DSY0544 hypothetical protein; hypothetical protein 234637 5677137 Clos_0202 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511762.1 233636 D 350688 CDS YP_001511763.1 158319256 5677138 234752..236506 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: chy:CHY_1856 sensor histidine kinase; histidine kinase 236506 5677138 Clos_0203 Alkaliphilus oremlandii OhILAs histidine kinase YP_001511763.1 234752 D 350688 CDS YP_001511764.1 158319257 5677139 236493..237815 1 NC_009922.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: chy:CHY_1855 sigma-54 dependent transcriptional regulator/response regulator; two component, sigma54 specific, Fis family transcriptional regulator 237815 5677139 Clos_0204 Alkaliphilus oremlandii OhILAs two component, sigma54 specific, Fis family transcriptional regulator YP_001511764.1 236493 D 350688 CDS YP_001511765.1 158319258 5677140 238096..241161 1 NC_009922.1 Contains selenocysteine; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dsy:DSY0547 putative anaerobic dehydrogenase; molybdopterin oxidoreductase 241161 5677140 Clos_0205 Alkaliphilus oremlandii OhILAs molybdopterin oxidoreductase YP_001511765.1 238096 D 350688 CDS YP_001511766.1 158319259 5677234 241181..241912 1 NC_009922.1 KEGG: dsy:DSY4905 hypothetical protein; hypothetical protein 241912 5677234 Clos_0206 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511766.1 241181 D 350688 CDS YP_001511767.1 158319260 5677235 241925..242485 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dsy:DSY4904 putative oxidoreductase iron-sulfur subunit; 4Fe-4S ferredoxin 242485 5677235 Clos_0207 Alkaliphilus oremlandii OhILAs 4Fe-4S ferredoxin YP_001511767.1 241925 D 350688 CDS YP_001511768.1 158319261 5677236 242606..243235 1 NC_009922.1 KEGG: amt:Amet_0989 molybdopterin-guanine dinucleotide biosynthesis protein A-like protein; molybdopterin-guanine dinucleotide biosynthesis protein A-like protein 243235 5677236 Clos_0208 Alkaliphilus oremlandii OhILAs molybdopterin-guanine dinucleotide biosynthesis protein A-like protein YP_001511768.1 242606 D 350688 CDS YP_001511769.1 158319262 5677237 243346..244437 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: amt:Amet_0993 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 244437 5677237 Clos_0209 Alkaliphilus oremlandii OhILAs 4Fe-4S ferredoxin YP_001511769.1 243346 D 350688 CDS YP_001511770.1 158319263 5677238 244516..245751 1 NC_009922.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: amt:Amet_0996 molybdenum cofactor synthesis domain; molybdenum cofactor synthesis domain-containing protein 245751 5677238 Clos_0210 Alkaliphilus oremlandii OhILAs molybdenum cofactor synthesis domain-containing protein YP_001511770.1 244516 D 350688 CDS YP_001511771.1 158319264 5677239 245748..246239 1 NC_009922.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: amt:Amet_0997 molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein B 246239 5677239 Clos_0211 Alkaliphilus oremlandii OhILAs molybdopterin-guanine dinucleotide biosynthesis protein B YP_001511771.1 245748 D 350688 CDS YP_001511772.1 158319265 5677240 247015..247866 1 NC_009922.1 KEGG: mta:Moth_1420 hypothetical protein; hypothetical protein 247866 5677240 Clos_0212 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511772.1 247015 D 350688 CDS YP_001511773.1 158319266 5677241 248000..249034 1 NC_009922.1 PFAM: transport system permease protein; ABC-3 protein; KEGG: mta:Moth_1424 transport system permease protein; transport system permease 249034 5677241 Clos_0213 Alkaliphilus oremlandii OhILAs transport system permease YP_001511773.1 248000 D 350688 CDS YP_001511774.1 158319267 5677242 249025..249819 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mac:MA1198 iron ABC transporter, ATP-binding protein; ABC transporter 249819 5677242 Clos_0214 Alkaliphilus oremlandii OhILAs ABC transporter YP_001511774.1 249025 D 350688 CDS YP_001511775.1 158319268 5677602 249885..250976 1 NC_009922.1 PFAM: periplasmic binding protein; KEGG: swo:Swol_1691 periplasmic binding protein; periplasmic binding protein 250976 5677602 Clos_0215 Alkaliphilus oremlandii OhILAs periplasmic binding protein YP_001511775.1 249885 D 350688 CDS YP_001511776.1 158319269 5677603 250993..251874 1 NC_009922.1 KEGG: dsy:DSY1136 hypothetical protein; hypothetical protein 251874 5677603 Clos_0216 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511776.1 250993 D 350688 CDS YP_001511777.1 158319270 5677604 251868..252689 1 NC_009922.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mja:MJ0785 biotin synthetase; radical SAM domain-containing protein 252689 5677604 Clos_0217 Alkaliphilus oremlandii OhILAs radical SAM domain-containing protein YP_001511777.1 251868 D 350688 CDS YP_001511778.1 158319271 5677605 252764..253897 1 NC_009922.1 PFAM: periplasmic binding protein; KEGG: mac:MA1232 iron(III) ABC transporter, solute-binding protein; periplasmic binding protein 253897 5677605 Clos_0218 Alkaliphilus oremlandii OhILAs periplasmic binding protein YP_001511778.1 252764 D 350688 CDS YP_001511779.1 158319272 5677606 253940..255145 1 NC_009922.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: dsy:DSY3835 hypothetical protein; molybdenum cofactor synthesis domain-containing protein 255145 5677606 Clos_0219 Alkaliphilus oremlandii OhILAs molybdenum cofactor synthesis domain-containing protein YP_001511779.1 253940 D 350688 CDS YP_001511780.1 158319273 5677607 255210..256352 1 NC_009922.1 PFAM: periplasmic binding protein; KEGG: swo:Swol_2097 periplasmic binding protein; periplasmic binding protein 256352 5677607 Clos_0220 Alkaliphilus oremlandii OhILAs periplasmic binding protein YP_001511780.1 255210 D 350688 CDS YP_001511781.1 158319274 5677608 256380..257063 1 NC_009922.1 KEGG: swo:Swol_2095 hypothetical protein; hypothetical protein 257063 5677608 Clos_0221 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511781.1 256380 D 350688 CDS YP_001511782.1 158319275 5677609 257078..258088 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_2094 ABC transporter, ATP-binding protein; ABC transporter 258088 5677609 Clos_0222 Alkaliphilus oremlandii OhILAs ABC transporter YP_001511782.1 257078 D 350688 CDS YP_001511783.1 158319276 5677610 258108..259307 1 NC_009922.1 KEGG: swo:Swol_2096 ABC-type Fe3+ transport system periplasmic component-like protein; Fe3+ ABC transporter periplasmic component-like protein 259307 5677610 Clos_0223 Alkaliphilus oremlandii OhILAs Fe3+ ABC transporter periplasmic component-like protein YP_001511783.1 258108 D 350688 CDS YP_001511784.1 158319277 5676262 259613..259987 1 NC_009922.1 KEGG: cbo:CBO3316 hypothetical protein; hypothetical protein 259987 5676262 Clos_0224 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511784.1 259613 D 350688 CDS YP_001511785.1 158319278 5676264 260659..261393 1 NC_009922.1 hypothetical protein 261393 5676264 Clos_0226 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511785.1 260659 D 350688 CDS YP_001511786.1 158319279 5676265 complement(261460..262359) 1 NC_009922.1 TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: amt:Amet_4424 arginase; arginase 262359 5676265 Clos_0227 Alkaliphilus oremlandii OhILAs arginase YP_001511786.1 261460 R 350688 CDS YP_001511787.1 158319280 5676266 complement(262678..263427) 1 NC_009922.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: amt:Amet_1709 PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 263427 5676266 Clos_0228 Alkaliphilus oremlandii OhILAs PpiC-type peptidyl-prolyl cis-trans isomerase YP_001511787.1 262678 R 350688 CDS YP_001511788.1 158319281 5676267 complement(263629..265407) 1 NC_009922.1 TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: amt:Amet_1063 oligoendopeptidase, PepF/M3 family; pepF/M3 family oligoendopeptidase 265407 5676267 Clos_0229 Alkaliphilus oremlandii OhILAs pepF/M3 family oligoendopeptidase YP_001511788.1 263629 R 350688 CDS YP_001511789.1 158319282 5676268 265624..266322 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbo:CBO0365 two-component response regulator; two component transcriptional regulator 266322 5676268 Clos_0230 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001511789.1 265624 D 350688 CDS YP_001511790.1 158319283 5676269 266390..268060 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bca:BCE_0295 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 268060 5676269 Clos_0231 Alkaliphilus oremlandii OhILAs integral membrane sensor signal transduction histidine kinase YP_001511790.1 266390 D 350688 CDS YP_001511791.1 158319284 5676270 268679..269692 1 NC_009922.1 catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 269692 5676270 Clos_0232 Alkaliphilus oremlandii OhILAs asparagine synthetase AsnA YP_001511791.1 268679 D 350688 CDS YP_001511792.1 158319285 5677030 269819..271540 1 NC_009922.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4658 ABC transporter, transmembrane region; ABC transporter 271540 5677030 Clos_0233 Alkaliphilus oremlandii OhILAs ABC transporter YP_001511792.1 269819 D 350688 CDS YP_001511793.1 158319286 5677031 complement(271706..272992) 1 NC_009922.1 PFAM: helix-turn-helix domain protein; KEGG: tte:TTE2455 TPR-repeat-containing proteins; XRE family transcriptional regulator 272992 5677031 Clos_0234 Alkaliphilus oremlandii OhILAs XRE family transcriptional regulator YP_001511793.1 271706 R 350688 CDS YP_001511794.1 158319287 5677032 273718..274317 1 NC_009922.1 PFAM: Accessory gene regulator B; KEGG: mta:Moth_1580 accessory gene regulator B; accessory gene regulator B 274317 5677032 Clos_0235 Alkaliphilus oremlandii OhILAs accessory gene regulator B YP_001511794.1 273718 D 350688 CDS YP_001511795.1 158319288 5677033 275185..276126 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; Motilin/ghrelin domain protein; KEGG: tte:TTE0562 sensory transduction histidine kinases; signal transduction histidine kinase regulating citrate/malate metabolism 276126 5677033 Clos_0236 Alkaliphilus oremlandii OhILAs signal transduction histidine kinase regulating citrate/malate metabolism YP_001511795.1 275185 D 350688 CDS YP_001511796.1 158319289 5677034 276509..280027 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: amt:Amet_4657 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 280027 5677034 Clos_0237 Alkaliphilus oremlandii OhILAs pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_001511796.1 276509 D 350688 CDS YP_001511797.1 158319290 5677035 280402..281841 1 NC_009922.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: amt:Amet_4655 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 281841 5677035 Clos_0238 Alkaliphilus oremlandii OhILAs phospholipase D/transphosphatidylase YP_001511797.1 280402 D 350688 CDS YP_001511798.1 158319291 5677036 complement(281937..282311) 1 NC_009922.1 PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: amt:Amet_4653 desulfoferrodoxin, ferrous iron-binding region; desulfoferrodoxin ferrous iron-binding region 282311 5677036 Clos_0239 Alkaliphilus oremlandii OhILAs desulfoferrodoxin ferrous iron-binding region YP_001511798.1 281937 R 350688 CDS YP_001511799.1 158319292 5677037 complement(282494..283120) 1 NC_009922.1 TIGRFAM: putative proton-coupled thiamine transporter YuaJ; PFAM: thiamine transporter YuaJ; KEGG: amt:Amet_4652 putative proton-coupled thiamine transporter YuaJ; putative proton-coupled thiamine transporter YuaJ 283120 5677037 Clos_0240 Alkaliphilus oremlandii OhILAs putative proton-coupled thiamine transporter YuaJ YP_001511799.1 282494 R 350688 CDS YP_001511800.1 158319293 5677038 283530..285530 1 NC_009922.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: amt:Amet_2943 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Cache sensor 285530 5677038 Clos_0241 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer with Cache sensor YP_001511800.1 283530 D 350688 CDS YP_001511801.1 158319294 5677197 285714..286211 1 NC_009922.1 PFAM: SEC-C motif domain protein; KEGG: amt:Amet_4650 sec-C motif domain protein; hypothetical protein 286211 5677197 Clos_0242 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511801.1 285714 D 350688 CDS YP_001511802.1 158319295 5677198 286291..286776 1 NC_009922.1 PFAM: dUTPase; KEGG: bha:BH3133 hypothetical protein; dUTPase 286776 5677198 Clos_0243 Alkaliphilus oremlandii OhILAs dUTPase YP_001511802.1 286291 D 350688 CDS YP_001511803.1 158319296 5677199 complement(286792..288084) 1 NC_009922.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: pab:PAB1438 DNA damage-inducimle protein; MATE efflux family protein 288084 5677199 Clos_0244 Alkaliphilus oremlandii OhILAs MATE efflux family protein YP_001511803.1 286792 R 350688 CDS YP_001511804.1 158319297 5677200 complement(288295..290247) 1 NC_009922.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: amt:Amet_4646 nitrate reductase; formate dehydrogenase 290247 5677200 Clos_0245 Alkaliphilus oremlandii OhILAs formate dehydrogenase YP_001511804.1 288295 R 350688 CDS YP_001511805.1 158319298 5677201 290586..291110 1 NC_009922.1 KEGG: amt:Amet_4641 metallophosphoesterase, calcineurin superfamily; calcineurin superfamily metallophosphoesterase 291110 5677201 Clos_0246 Alkaliphilus oremlandii OhILAs calcineurin superfamily metallophosphoesterase YP_001511805.1 290586 D 350688 CDS YP_001511806.1 158319299 5677202 291135..292136 1 NC_009922.1 KEGG: amt:Amet_4640 hypothetical protein; hypothetical protein 292136 5677202 Clos_0247 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511806.1 291135 D 350688 CDS YP_001511807.1 158319300 5677203 292253..293083 1 NC_009922.1 PFAM: nitroreductase; KEGG: amt:Amet_4639 nitroreductase; nitroreductase 293083 5677203 Clos_0248 Alkaliphilus oremlandii OhILAs nitroreductase YP_001511807.1 292253 D 350688 CDS YP_001511808.1 158319301 5677204 293143..294000 1 NC_009922.1 PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: cdf:CD0720 FolD bifunctional protein; methylenetetrahydrofolate dehydrogenase 294000 5677204 Clos_0249 Alkaliphilus oremlandii OhILAs methylenetetrahydrofolate dehydrogenase YP_001511808.1 293143 D 350688 CDS YP_001511809.1 158319302 5675865 complement(294092..296083) 1 NC_009922.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: amt:Amet_4638 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer with Cache sensor 296083 5675865 Clos_0250 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer with Cache sensor YP_001511809.1 294092 R 350688 CDS YP_001511810.1 158319303 5675866 296309..297628 1 NC_009922.1 KEGG: amt:Amet_4637 hypothetical protein; hypothetical protein 297628 5675866 Clos_0251 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511810.1 296309 D 350688 CDS YP_001511811.1 158319304 5675867 297830..299146 1 NC_009922.1 PFAM: glutamate--cysteine ligase GCS2; KEGG: amt:Amet_4636 glutamate--cysteine ligase; glutamate--cysteine ligase 299146 5675867 Clos_0252 Alkaliphilus oremlandii OhILAs glutamate--cysteine ligase YP_001511811.1 297830 D 350688 CDS YP_001511812.1 158319305 5675868 299133..300464 1 NC_009922.1 KEGG: amt:Amet_4635 conserved hypothetical protein; hypothetical protein 300464 5675868 Clos_0253 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511812.1 299133 D 350688 CDS YP_001511813.1 158319306 5675869 complement(300534..301157) 1 NC_009922.1 KEGG: amt:Amet_4321 sporulation protein YtaF; sporulation protein YtaF 301157 5675869 Clos_0254 Alkaliphilus oremlandii OhILAs sporulation protein YtaF YP_001511813.1 300534 R 350688 CDS YP_001511814.1 158319307 5675870 complement(301389..302321) 1 NC_009922.1 TIGRFAM: Na+/Ca+ antiporter, CaCA family; PFAM: sodium/calcium exchanger membrane region; KEGG: oih:OB0443 hypothetical conserved protein; CaCA family Na(+)/Ca(+) antiporter 302321 5675870 Clos_0255 Alkaliphilus oremlandii OhILAs CaCA family Na(+)/Ca(+) antiporter YP_001511814.1 301389 R 350688 CDS YP_001511815.1 158319308 5675871 302667..303869 1 NC_009922.1 PFAM: protein of unknown function UPF0118; KEGG: amt:Amet_4632 protein of unknown function UPF0118; hypothetical protein 303869 5675871 Clos_0256 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511815.1 302667 D 350688 CDS YP_001511816.1 158319309 5675872 304213..304953 1 NC_009922.1 PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: amt:Amet_4631 3-oxoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR 304953 5675872 Clos_0257 Alkaliphilus oremlandii OhILAs short-chain dehydrogenase/reductase SDR YP_001511816.1 304213 D 350688 CDS YP_001511817.1 158319310 5675873 305004..306182 1 NC_009922.1 KEGG: amt:Amet_4630 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 306182 5675873 Clos_0258 Alkaliphilus oremlandii OhILAs acetyl-CoA acetyltransferase YP_001511817.1 305004 D 350688 CDS YP_001511818.1 158319311 5677648 complement(306314..307177) 1 NC_009922.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: amt:Amet_4626 protein of unknown function DUF6, transmembrane; hypothetical protein 307177 5677648 Clos_0259 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511818.1 306314 R 350688 CDS YP_001511819.1 158319312 5677649 307418..308578 1 NC_009922.1 PFAM: Glycosyltransferase 28 domain; Monogalactosyldiacylglycerol synthase; KEGG: csc:Csac_2337 monogalactosyldiacylglycerol synthase; monogalactosyldiacylglycerol synthase 308578 5677649 Clos_0260 Alkaliphilus oremlandii OhILAs monogalactosyldiacylglycerol synthase YP_001511819.1 307418 D 350688 CDS YP_001511820.1 158319313 5677650 308694..309632 1 NC_009922.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: cbo:CBO1522 C4-dicarboxylate/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 309632 5677650 Clos_0261 Alkaliphilus oremlandii OhILAs C4-dicarboxylate transporter/malic acid transport protein YP_001511820.1 308694 D 350688 CDS YP_001511821.1 158319314 5677651 complement(309749..310219) 1 NC_009922.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: ctc:CTC02474 carbon monoxide dehydrogenase, small subunit; 2Fe-2S iron-sulfur cluster binding domain-containing protein 310219 5677651 Clos_0262 Alkaliphilus oremlandii OhILAs 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001511821.1 309749 R 350688 CDS YP_001511822.1 158319315 5677652 complement(310216..311055) 1 NC_009922.1 PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: ctc:CTC02475 putative carbon-monoxide dehydrogenase, middle subunit; molybdopterin dehydrogenase FAD-binding 311055 5677652 Clos_0263 Alkaliphilus oremlandii OhILAs molybdopterin dehydrogenase FAD-binding YP_001511822.1 310216 R 350688 CDS YP_001511823.1 158319316 5677653 complement(311042..313378) 1 NC_009922.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: ctc:CTC02477 putative carbon-monoxide dehydrogenase, large subunit; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 313378 5677653 Clos_0264 Alkaliphilus oremlandii OhILAs molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001511823.1 311042 R 350688 CDS YP_001511824.1 158319317 5677654 313587..315704 1 NC_009922.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: tte:TTE2231 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 315704 5677654 Clos_0265 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer with Cache sensor YP_001511824.1 313587 D 350688 CDS YP_001511825.1 158319318 5677655 315870..316721 1 NC_009922.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: drm:Dred_2106 phosphate binding protein; phosphate binding protein 316721 5677655 Clos_0266 Alkaliphilus oremlandii OhILAs phosphate binding protein YP_001511825.1 315870 D 350688 CDS YP_001511826.1 158319319 5677656 316840..317775 1 NC_009922.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_1611 phosphate ABC transporter, inner membrane subunit PstC; phosphate ABC transporter permease 317775 5677656 Clos_0267 Alkaliphilus oremlandii OhILAs phosphate ABC transporter permease YP_001511826.1 316840 D 350688 CDS YP_001511827.1 158319320 5677773 317777..318598 1 NC_009922.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vpa:VPA1459 phosphate ABC transporter, permease protein; phosphate ABC transporter permease 318598 5677773 Clos_0268 Alkaliphilus oremlandii OhILAs phosphate ABC transporter permease YP_001511827.1 317777 D 350688 CDS YP_001511828.1 158319321 5677774 318648..319400 1 NC_009922.1 KEGG: amt:Amet_4621 phosphate ABC transporter, ATPase subunit; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase 319400 5677774 Clos_0269 Alkaliphilus oremlandii OhILAs phosphate ABC transporter ATPase YP_001511828.1 318648 D 350688 CDS YP_001511829.1 158319322 5677775 319412..320062 1 NC_009922.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: amt:Amet_4620 phosphate uptake regulator, PhoU; phosphate uptake regulator PhoU 320062 5677775 Clos_0270 Alkaliphilus oremlandii OhILAs phosphate uptake regulator PhoU YP_001511829.1 319412 D 350688 CDS YP_001511830.1 158319323 5677776 320233..320823 1 NC_009922.1 KEGG: cac:CAC3379 uncharacterized protein, YQFW B.subtilis homolog; hypothetical protein 320823 5677776 Clos_0271 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511830.1 320233 D 350688 CDS YP_001511831.1 158319324 5677777 complement(320882..321079) 1 NC_009922.1 PFAM: helix-turn-helix domain protein; KEGG: cbo:CBO1403 regulatory protein; XRE family transcriptional regulator 321079 5677777 Clos_0272 Alkaliphilus oremlandii OhILAs XRE family transcriptional regulator YP_001511831.1 320882 R 350688 CDS YP_001511832.1 158319325 5677778 321364..322722 1 NC_009922.1 PFAM: FMN-binding domain protein; KEGG: amt:Amet_4619 FMN-binding domain protein; FMN-binding domain-containing protein 322722 5677778 Clos_0273 Alkaliphilus oremlandii OhILAs FMN-binding domain-containing protein YP_001511832.1 321364 D 350688 CDS YP_001511833.1 158319326 5677779 complement(323124..324554) 1 NC_009922.1 PFAM: Na+/H+ antiporter NhaC; KEGG: amt:Amet_4617 Na+/H+ antiporter NhaC; Na+/H+ antiporter NhaC 324554 5677779 Clos_0274 Alkaliphilus oremlandii OhILAs Na+/H+ antiporter NhaC YP_001511833.1 323124 R 350688 CDS YP_001511834.1 158319327 5677780 324971..325483 1 NC_009922.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: amt:Amet_3094 NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH dehydrogenase (ubiquinone) 24 kDa subunit 325483 5677780 Clos_0275 Alkaliphilus oremlandii OhILAs NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_001511834.1 324971 D 350688 CDS YP_001511835.1 158319328 5678180 325504..327252 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: csc:Csac_0620 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 327252 5678180 Clos_0276 Alkaliphilus oremlandii OhILAs NADH dehydrogenase (quinone) YP_001511835.1 325504 D 350688 CDS YP_001511836.1 158319329 5678181 327274..330852 1 NC_009922.1 PFAM: ferredoxin; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: amt:Amet_3096 molybdopterin oxidoreductase; molybdopterin oxidoreductase 330852 5678181 Clos_0277 Alkaliphilus oremlandii OhILAs molybdopterin oxidoreductase YP_001511836.1 327274 D 350688 CDS YP_001511837.1 158319330 5678182 331121..332620 1 NC_009922.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 332620 5678182 Clos_0278 Alkaliphilus oremlandii OhILAs leucyl aminopeptidase YP_001511837.1 331121 D 350688 CDS YP_001511838.1 158319331 5678183 332759..332932 1 NC_009922.1 KEGG: amt:Amet_4614 hypothetical protein; hypothetical protein 332932 5678183 Clos_0279 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511838.1 332759 D 350688 CDS YP_001511839.1 158319332 5678184 complement(333055..333216) 1 NC_009922.1 KEGG: amt:Amet_4613 conserved hypothetical protein; hypothetical protein 333216 5678184 Clos_0280 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511839.1 333055 R 350688 CDS YP_001511840.1 158319333 5678185 333663..335096 1 NC_009922.1 TIGRFAM: SpoIID/LytB domain; PFAM: cell wall hydrolase/autolysin; KEGG: amt:Amet_4611 SpoIID/LytB domain protein; SpoIID/LytB domain-containing protein 335096 5678185 Clos_0281 Alkaliphilus oremlandii OhILAs SpoIID/LytB domain-containing protein YP_001511840.1 333663 D 350688 CDS YP_001511841.1 158319334 5678186 335404..335691 1 NC_009922.1 PFAM: protein of unknown function DUF1021; KEGG: amt:Amet_4610 protein of unknown function DUF1021; hypothetical protein 335691 5678186 Clos_0282 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511841.1 335404 D 350688 CDS YP_001511842.1 158319335 5678187 335768..336031 1 NC_009922.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: cpf:CPF_1697 GIY-YIG domain protein; excinuclease ABC subunit C 336031 5678187 Clos_0283 Alkaliphilus oremlandii OhILAs excinuclease ABC subunit C YP_001511842.1 335768 D 350688 CDS YP_001511843.1 158319336 5678188 336162..337736 1 NC_009922.1 PFAM: Peptidoglycan-binding LysM; KEGG: amt:Amet_4605 peptidoglycan-binding LysM; peptidoglycan-binding LysM 337736 5678188 Clos_0284 Alkaliphilus oremlandii OhILAs peptidoglycan-binding LysM YP_001511843.1 336162 D 350688 CDS YP_001511844.1 158319337 5678591 337864..338742 1 NC_009922.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 338742 ipk 5678591 ipk Alkaliphilus oremlandii OhILAs 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_001511844.1 337864 D 350688 CDS YP_001511845.1 158319338 5678592 338735..339421 1 NC_009922.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: amt:Amet_4603 transcriptional regulator, GntR family; GntR family transcriptional regulator 339421 5678592 Clos_0286 Alkaliphilus oremlandii OhILAs GntR family transcriptional regulator YP_001511845.1 338735 D 350688 CDS YP_001511846.1 158319339 5678593 339472..340206 1 NC_009922.1 KEGG: amt:Amet_4602 conserved hypothetical protein; hypothetical protein 340206 5678593 Clos_0287 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511846.1 339472 D 350688 CDS YP_001511847.1 158319340 5678594 340708..342288 1 NC_009922.1 PFAM: GerA spore germination protein; KEGG: amt:Amet_4600 GerA spore germination protein; GerA spore germination protein 342288 5678594 Clos_0288 Alkaliphilus oremlandii OhILAs GerA spore germination protein YP_001511847.1 340708 D 350688 CDS YP_001511848.1 158319341 5678595 342294..343403 1 NC_009922.1 TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: amt:Amet_4598 spore germination protein; spore germination protein 343403 5678595 Clos_0289 Alkaliphilus oremlandii OhILAs spore germination protein YP_001511848.1 342294 D 350688 CDS YP_001511849.1 158319342 5678596 343396..344553 1 NC_009922.1 PFAM: spore germination B3 GerAC family protein; KEGG: amt:Amet_4599 spore germination B3 GerAC family protein; spore germination B3 GerAC family protein 344553 5678596 Clos_0290 Alkaliphilus oremlandii OhILAs spore germination B3 GerAC family protein YP_001511849.1 343396 D 350688 CDS YP_001511850.1 158319343 5678597 344673..345356 1 NC_009922.1 TIGRFAM: Sporulation stage II protein R; KEGG: amt:Amet_4592 sporulation stage II, protein R; sporulation stage II protein R 345356 5678597 Clos_0291 Alkaliphilus oremlandii OhILAs sporulation stage II protein R YP_001511850.1 344673 D 350688 CDS YP_001511851.1 158319344 5678598 345812..346918 1 NC_009922.1 TIGRFAM: D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein; RimK domain protein ATP-grasp; KEGG: amt:Amet_4591 D-alanine--D-alanine ligase; D-alanine--D-alanine ligase 346918 5678598 Clos_0292 Alkaliphilus oremlandii OhILAs D-alanine--D-alanine ligase YP_001511851.1 345812 D 350688 CDS YP_001511852.1 158319345 5678599 346948..347373 1 NC_009922.1 PFAM: Domain of unknown function DUF1934; KEGG: amt:Amet_4590 domain of unknown function DUF1934; hypothetical protein 347373 5678599 Clos_0293 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511852.1 346948 D 350688 CDS YP_001511853.1 158319346 5677282 347455..348096 1 NC_009922.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: amt:Amet_4589 formiminotransferase-cyclodeaminase; formiminotransferase-cyclodeaminase 348096 5677282 Clos_0294 Alkaliphilus oremlandii OhILAs formiminotransferase-cyclodeaminase YP_001511853.1 347455 D 350688 CDS YP_001511854.1 158319347 5677283 348243..349898 1 NC_009922.1 PFAM: purine catabolism PurC domain protein; KEGG: amt:Amet_4588 transcriptional regulator, CdaR; transcriptional regulator CdaR 349898 5677283 Clos_0295 Alkaliphilus oremlandii OhILAs transcriptional regulator CdaR YP_001511854.1 348243 D 350688 CDS YP_001511855.1 158319348 5677284 complement(349968..350507) 1 NC_009922.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: amt:Amet_4328 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase 350507 5677284 Clos_0296 Alkaliphilus oremlandii OhILAs alkyl hydroperoxide reductase YP_001511855.1 349968 R 350688 CDS YP_001511856.1 158319349 5677285 350750..351922 1 NC_009922.1 KEGG: sfu:Sfum_0958 ATP-grasp enzyme-like; ATP-grasp protein-like protein 351922 5677285 Clos_0297 Alkaliphilus oremlandii OhILAs ATP-grasp protein-like protein YP_001511856.1 350750 D 350688 CDS YP_001511857.1 158319350 5677286 351968..353479 1 NC_009922.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: amt:Amet_1618 UDP-N-acetylmuramyl-tripeptide synthetase; UDP-N-acetylmuramyl tripeptide synthetase 353479 5677286 Clos_0298 Alkaliphilus oremlandii OhILAs UDP-N-acetylmuramyl tripeptide synthetase YP_001511857.1 351968 D 350688 CDS YP_001511858.1 158319351 5677287 complement(353601..354830) 1 NC_009922.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 354830 5677287 Clos_0299 Alkaliphilus oremlandii OhILAs peptidase T YP_001511858.1 353601 R 350688 CDS YP_001511859.1 158319352 5677288 355035..356336 1 NC_009922.1 PFAM: copper amine oxidase domain protein; SCP-like extracellular; KEGG: cth:Cthe_0779 copper amine oxidase-like protein; copper amine oxidase domain-containing protein 356336 5677288 Clos_0300 Alkaliphilus oremlandii OhILAs copper amine oxidase domain-containing protein YP_001511859.1 355035 D 350688 CDS YP_001511860.1 158319353 5677289 complement(356431..357150) 1 NC_009922.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: amt:Amet_3731 PHP C-terminal domain protein; putative hydrolase 357150 5677289 Clos_0301 Alkaliphilus oremlandii OhILAs putative hydrolase YP_001511860.1 356431 R 350688 CDS YP_001511861.1 158319354 5677290 357577..358728 1 NC_009922.1 KEGG: sat:SYN_00365 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 358728 5677290 Clos_0302 Alkaliphilus oremlandii OhILAs ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components YP_001511861.1 357577 D 350688 CDS YP_001511862.1 158319355 5676384 358728..359636 1 NC_009922.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sat:SYN_00366 sulfate transport system permease protein; binding-protein-dependent transport system inner membrane protein 359636 5676384 Clos_0303 Alkaliphilus oremlandii OhILAs binding-protein-dependent transport system inner membrane protein YP_001511862.1 358728 D 350688 CDS YP_001511863.1 158319356 5676385 359647..360414 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00367 sulfate transport ATP-binding protein; ABC transporter 360414 5676385 Clos_0304 Alkaliphilus oremlandii OhILAs ABC transporter YP_001511863.1 359647 D 350688 CDS YP_001511864.1 158319357 5676386 360674..360934 1 NC_009922.1 PFAM: protein of unknown function UPF0153; KEGG: rrs:RoseRS_2875 protein of unknown function UPF0153; hypothetical protein 360934 5676386 Clos_0305 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511864.1 360674 D 350688 CDS YP_001511865.1 158319358 5676387 complement(360989..361378) 1 NC_009922.1 KEGG: amt:Amet_3733 hypothetical protein; hypothetical protein 361378 5676387 Clos_0306 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511865.1 360989 R 350688 CDS YP_001511866.1 158319359 5676388 complement(361537..362274) 1 NC_009922.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: amt:Amet_4675 helix-turn-helix-domain containing protein, AraC type; AraC family transcriptional regulator 362274 5676388 Clos_0307 Alkaliphilus oremlandii OhILAs AraC family transcriptional regulator YP_001511866.1 361537 R 350688 CDS YP_001511867.1 158319360 5676389 362477..362977 1 NC_009922.1 KEGG: tde:TDE1177 flavodoxin family protein; flavodoxin family protein 362977 5676389 Clos_0308 Alkaliphilus oremlandii OhILAs flavodoxin family protein YP_001511867.1 362477 D 350688 CDS YP_001511868.1 158319361 5676390 362992..363738 1 NC_009922.1 PFAM: NifH/frxC-family protein; KEGG: cbo:CBO0690 nitrogenase iron protein; nitrogenase 363738 5676390 Clos_0309 Alkaliphilus oremlandii OhILAs nitrogenase YP_001511868.1 362992 D 350688 CDS YP_001511869.1 158319362 5676391 363741..364649 1 NC_009922.1 PFAM: periplasmic binding protein; KEGG: bce:BC4546 ferrichrome-binding protein; periplasmic binding protein 364649 5676391 Clos_0310 Alkaliphilus oremlandii OhILAs periplasmic binding protein YP_001511869.1 363741 D 350688 CDS YP_001511870.1 158319363 5676392 364661..365650 1 NC_009922.1 PFAM: transport system permease protein; KEGG: ctc:CTC01196 putative ferrichrome ABC transporter; transport system permease protein 365650 5676392 Clos_0311 Alkaliphilus oremlandii OhILAs transport system permease protein YP_001511870.1 364661 D 350688 CDS YP_001511871.1 158319364 5676522 365650..366462 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1448 ferric enterobactin transport ATP-binding protein FepC; ABC transporter 366462 5676522 Clos_0312 Alkaliphilus oremlandii OhILAs ABC transporter YP_001511871.1 365650 D 350688 CDS YP_001511872.1 158319365 5676523 366449..367756 1 NC_009922.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: cbo:CBO0691 nitrogenase iron-molybdenum cofactor biosynthesis protein; oxidoreductase/nitrogenase component 1 367756 5676523 Clos_0313 Alkaliphilus oremlandii OhILAs oxidoreductase/nitrogenase component 1 YP_001511872.1 366449 D 350688 CDS YP_001511873.1 158319366 5676524 367760..369013 1 NC_009922.1 PFAM: oxidoreductase/nitrogenase component 1; KEGG: cbo:CBO0692 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE; oxidoreductase/nitrogenase component 1 369013 5676524 Clos_0314 Alkaliphilus oremlandii OhILAs oxidoreductase/nitrogenase component 1 YP_001511873.1 367760 D 350688 CDS YP_001511874.1 158319367 5676525 complement(369260..370378) 1 NC_009922.1 PFAM: spore germination B3 GerAC family protein; KEGG: amt:Amet_0512 spore germination B3 GerAC family protein; spore germination B3 GerAC family protein 370378 5676525 Clos_0315 Alkaliphilus oremlandii OhILAs spore germination B3 GerAC family protein YP_001511874.1 369260 R 350688 CDS YP_001511875.1 158319368 5676526 complement(370359..371465) 1 NC_009922.1 TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: amt:Amet_0513 spore germination protein; spore germination protein 371465 5676526 Clos_0316 Alkaliphilus oremlandii OhILAs spore germination protein YP_001511875.1 370359 R 350688 CDS YP_001511876.1 158319369 5676527 complement(371499..373037) 1 NC_009922.1 PFAM: GerA spore germination protein; KEGG: amt:Amet_0514 GerA spore germination protein; GerA spore germination protein 373037 5676527 Clos_0317 Alkaliphilus oremlandii OhILAs GerA spore germination protein YP_001511876.1 371499 R 350688 CDS YP_001511877.1 158319370 5676528 373607..374659 1 NC_009922.1 PFAM: periplasmic binding protein; KEGG: dsy:DSY3874 hypothetical protein; periplasmic binding protein 374659 5676528 Clos_0318 Alkaliphilus oremlandii OhILAs periplasmic binding protein YP_001511877.1 373607 D 350688 CDS YP_001511878.1 158319371 5676529 374652..375680 1 NC_009922.1 PFAM: transport system permease protein; inner-membrane translocator; KEGG: dsy:DSY3873 hypothetical protein; transport system permease protein 375680 5676529 Clos_0319 Alkaliphilus oremlandii OhILAs transport system permease protein YP_001511878.1 374652 D 350688 CDS YP_001511879.1 158319372 5676773 375667..376470 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC01197 ferric enterobactin transport ATP-binding protein fepC; ABC transporter 376470 5676773 Clos_0320 Alkaliphilus oremlandii OhILAs ABC transporter YP_001511879.1 375667 D 350688 CDS YP_001511880.1 158319373 5676774 376520..377365 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pth:PTH_1476 ABC-type multidrug transport system, ATPase component; ABC transporter 377365 5676774 Clos_0321 Alkaliphilus oremlandii OhILAs ABC transporter YP_001511880.1 376520 D 350688 CDS YP_001511881.1 158319374 5676775 377355..378089 1 NC_009922.1 PFAM: ABC-2 type transporter; KEGG: pth:PTH_1475 ABC-type multidrug transport system, permease component; ABC-2 type transporter 378089 5676775 Clos_0322 Alkaliphilus oremlandii OhILAs ABC-2 type transporter YP_001511881.1 377355 D 350688 CDS YP_001511882.1 158319375 5676776 378105..378893 1 NC_009922.1 PFAM: anaerobic cobalt chelatase; KEGG: cdf:CD3422 sirohydrochlorin cobaltochelatase; anaerobic cobalt chelatase 378893 5676776 Clos_0323 Alkaliphilus oremlandii OhILAs anaerobic cobalt chelatase YP_001511882.1 378105 D 350688 CDS YP_001511883.1 158319376 5676777 379224..379898 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: swo:Swol_2177 response regulator receiver protein; two component transcriptional regulator 379898 5676777 Clos_0324 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001511883.1 379224 D 350688 CDS YP_001511884.1 158319377 5676778 379895..381106 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: swo:Swol_2176 hypothetical protein; integral membrane sensor signal transduction histidine kinase 381106 5676778 Clos_0325 Alkaliphilus oremlandii OhILAs integral membrane sensor signal transduction histidine kinase YP_001511884.1 379895 D 350688 CDS YP_001511885.1 158319378 5676779 381292..381762 1 NC_009922.1 catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 381762 mgsA 5676779 mgsA Alkaliphilus oremlandii OhILAs methylglyoxal synthase YP_001511885.1 381292 D 350688 CDS YP_001511886.1 158319379 5676780 381805..382974 1 NC_009922.1 KEGG: amt:Amet_2939 hypothetical protein; hypothetical protein 382974 5676780 Clos_0327 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511886.1 381805 D 350688 CDS YP_001511887.1 158319380 5676781 383199..383765 1 NC_009922.1 TIGRFAM: metal dependent phophohydrolase; KEGG: amt:Amet_3102 metal dependent phosphohydrolase; metal dependent phophohydrolase 383765 5676781 Clos_0328 Alkaliphilus oremlandii OhILAs metal dependent phophohydrolase YP_001511887.1 383199 D 350688 CDS YP_001511888.1 158319381 5677454 384234..385199 1 NC_009922.1 hypothetical protein 385199 5677454 Clos_0329 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511888.1 384234 D 350688 CDS YP_001511889.1 158319382 5677456 complement(386375..387745) 1 NC_009922.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ctc:CTC00443 Na+ driven multidrug efflux pump; MATE efflux family protein 387745 5677456 Clos_0331 Alkaliphilus oremlandii OhILAs MATE efflux family protein YP_001511889.1 386375 R 350688 CDS YP_001511890.1 158319383 5677457 complement(387917..388633) 1 NC_009922.1 KEGG: cdf:CD1748 hypothetical protein; hypothetical protein 388633 5677457 Clos_0332 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511890.1 387917 R 350688 CDS YP_001511891.1 158319384 5677458 complement(388863..389795) 1 NC_009922.1 TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cbe:Cbei_4356 cysteine synthase A; cysteine synthase A 389795 5677458 Clos_0333 Alkaliphilus oremlandii OhILAs cysteine synthase A YP_001511891.1 388863 R 350688 CDS YP_001511892.1 158319385 5677459 390036..391262 1 NC_009922.1 KEGG: tde:TDE2485 hypothetical protein; hypothetical protein 391262 5677459 Clos_0334 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511892.1 390036 D 350688 CDS YP_001511893.1 158319386 5677460 391302..392324 1 NC_009922.1 KEGG: tde:TDE2484 hypothetical protein; hypothetical protein 392324 5677460 Clos_0335 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511893.1 391302 D 350688 CDS YP_001511894.1 158319387 5677461 392318..393157 1 NC_009922.1 PFAM: protein of unknown function DUF477; KEGG: bha:BH1807 hypothetical protein; hypothetical protein 393157 5677461 Clos_0336 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511894.1 392318 D 350688 CDS YP_001511895.1 158319388 5677462 393196..394041 1 NC_009922.1 KEGG: cbe:Cbei_0552 apurinic endonuclease Apn1; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; apurinic endonuclease Apn1 394041 5677462 Clos_0337 Alkaliphilus oremlandii OhILAs apurinic endonuclease Apn1 YP_001511895.1 393196 D 350688 CDS YP_001511896.1 158319389 5676664 394247..394879 1 NC_009922.1 KEGG: amt:Amet_2102 hypothetical protein; hypothetical protein 394879 5676664 Clos_0338 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511896.1 394247 D 350688 CDS YP_001511897.1 158319390 5676665 395017..395823 1 NC_009922.1 KEGG: tte:TTE2610 histidinol phosphatase and related hydrolases of the PHP family; histidinol phosphatase 395823 5676665 Clos_0339 Alkaliphilus oremlandii OhILAs histidinol phosphatase YP_001511897.1 395017 D 350688 CDS YP_001511898.1 158319391 5676666 396048..397031 1 NC_009922.1 KEGG: mac:MA2899 hypothetical protein; hypothetical protein 397031 5676666 Clos_0340 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511898.1 396048 D 350688 CDS YP_001511899.1 158319392 5676667 397157..397714 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: amt:Amet_3366 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 397714 5676667 Clos_0341 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001511899.1 397157 D 350688 CDS YP_001511900.1 158319393 5676668 397839..398330 1 NC_009922.1 PFAM: isochorismatase hydrolase; KEGG: rci:RCIX623 hydrolase (isochorismatase family); isochorismatase hydrolase 398330 5676668 Clos_0342 Alkaliphilus oremlandii OhILAs isochorismatase hydrolase YP_001511900.1 397839 D 350688 CDS YP_001511901.1 158319394 5676669 398476..399114 1 NC_009922.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: amt:Amet_2262 HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD family hydrolase 399114 5676669 Clos_0343 Alkaliphilus oremlandii OhILAs HAD family hydrolase YP_001511901.1 398476 D 350688 CDS YP_001511902.1 158319395 5676670 399392..400201 1 NC_009922.1 PFAM: Streptomycin adenylyltransferase; KEGG: bha:BH0322 aminoglycoside 6-adenylyltransferase; adenylyltransferase 400201 5676670 Clos_0344 Alkaliphilus oremlandii OhILAs adenylyltransferase YP_001511902.1 399392 D 350688 CDS YP_001511903.1 158319396 5676671 complement(400261..400767) 1 NC_009922.1 hypothetical protein 400767 5676671 Clos_0345 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511903.1 400261 R 350688 CDS YP_001511904.1 158319397 5676672 complement(400797..401381) 1 NC_009922.1 hypothetical protein 401381 5676672 Clos_0346 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511904.1 400797 R 350688 CDS YP_001511905.1 158319398 5678314 401707..402312 1 NC_009922.1 hypothetical protein 402312 5678314 Clos_0347 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511905.1 401707 D 350688 CDS YP_001511906.1 158319399 5678315 402347..402787 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bld:BLi01189 YitI; N-acetyltransferase GCN5 402787 5678315 Clos_0348 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001511906.1 402347 D 350688 CDS YP_001511907.1 158319400 5678316 402812..403849 1 NC_009922.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: btl:BALH_2911 possible microcin C7 self-immunity protein; peptidase U61 LD-carboxypeptidase A 403849 5678316 Clos_0349 Alkaliphilus oremlandii OhILAs peptidase U61 LD-carboxypeptidase A YP_001511907.1 402812 D 350688 CDS YP_001511908.1 158319401 5678317 404098..404628 1 NC_009922.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bsu:BG11573 RNA polymerase ECF-type sigma factor; ECF subfamily RNA polymerase sigma-24 factor 404628 5678317 Clos_0350 Alkaliphilus oremlandii OhILAs ECF subfamily RNA polymerase sigma-24 factor YP_001511908.1 404098 D 350688 CDS YP_001511909.1 158319402 5678318 404625..405968 1 NC_009922.1 KEGG: dsy:DSY1733 hypothetical protein; hypothetical protein 405968 5678318 Clos_0351 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511909.1 404625 D 350688 CDS YP_001511910.1 158319403 5678319 406034..406498 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC3374 predicted acetyltransferase; N-acetyltransferase GCN5 406498 5678319 Clos_0352 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001511910.1 406034 D 350688 CDS YP_001511911.1 158319404 5678320 406666..407562 1 NC_009922.1 PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: ter:Tery_2183 protein of unknown function DUF6, transmembrane; hypothetical protein 407562 5678320 Clos_0353 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511911.1 406666 D 350688 CDS YP_001511912.1 158319405 5678321 complement(407614..409632) 1 NC_009922.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY3380 hypothetical protein; methyl-accepting chemotaxis sensory transducer 409632 5678321 Clos_0354 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer YP_001511912.1 407614 R 350688 CDS YP_001511913.1 158319406 5678322 410018..410707 1 NC_009922.1 PFAM: beta-lactamase domain protein; KEGG: ctc:CTC01895 metal dependent hydrolase; beta-lactamase domain-containing protein 410707 5678322 Clos_0355 Alkaliphilus oremlandii OhILAs beta-lactamase domain-containing protein YP_001511913.1 410018 D 350688 CDS YP_001511914.1 158319407 5677178 410779..411357 1 NC_009922.1 KEGG: fjo:Fjoh_1869 hypothetical protein; hypothetical protein 411357 5677178 Clos_0356 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511914.1 410779 D 350688 CDS YP_001511915.1 158319408 5677179 411434..411760 1 NC_009922.1 KEGG: cdf:CD1728 hypothetical protein; hypothetical protein 411760 5677179 Clos_0357 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511915.1 411434 D 350688 CDS YP_001511916.1 158319409 5677180 411784..412800 1 NC_009922.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: dsy:DSY1229 hypothetical protein; excinuclease ABC subunit C 412800 5677180 Clos_0358 Alkaliphilus oremlandii OhILAs excinuclease ABC subunit C YP_001511916.1 411784 D 350688 CDS YP_001511917.1 158319410 5677181 412826..413884 1 NC_009922.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cac:CAC0196 NADH-dependent flavine oxidoreductase; NADH:flavin oxidoreductase 413884 5677181 Clos_0359 Alkaliphilus oremlandii OhILAs NADH:flavin oxidoreductase YP_001511917.1 412826 D 350688 CDS YP_001511918.1 158319411 5677182 complement(414424..415116) 1 NC_009922.1 PFAM: cyclase family protein; KEGG: chy:CHY_0702 putative cyclase; cyclase family protein 415116 5677182 Clos_0360 Alkaliphilus oremlandii OhILAs cyclase family protein YP_001511918.1 414424 R 350688 CDS YP_001511919.1 158319412 5677183 415471..416379 1 NC_009922.1 KEGG: chy:CHY_0695 glutamate formiminotransferase; TIGRFAM: glutamate formiminotransferase; PFAM: Formiminotransferase domain protein; glutamate formiminotransferase 416379 5677183 Clos_0361 Alkaliphilus oremlandii OhILAs glutamate formiminotransferase YP_001511919.1 415471 D 350688 CDS YP_001511920.1 158319413 5677184 416403..417818 1 NC_009922.1 KEGG: chy:CHY_0678 allantoinase; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; dihydroorotase, multifunctional complex type 417818 5677184 Clos_0362 Alkaliphilus oremlandii OhILAs dihydroorotase, multifunctional complex type YP_001511920.1 416403 D 350688 CDS YP_001511921.1 158319414 5677185 417831..418433 1 NC_009922.1 PFAM: isochorismatase hydrolase; KEGG: chy:CHY_0679 isochorismatase family protein; isochorismatase hydrolase 418433 5677185 Clos_0363 Alkaliphilus oremlandii OhILAs isochorismatase hydrolase YP_001511921.1 417831 D 350688 CDS YP_001511922.1 158319415 5677186 418533..419087 1 NC_009922.1 TIGRFAM: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; PFAM: flavoprotein; KEGG: chy:CHY_0680 putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 419087 5677186 Clos_0364 Alkaliphilus oremlandii OhILAs 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_001511922.1 418533 D 350688 CDS YP_001511923.1 158319416 5676539 419108..420463 1 NC_009922.1 TIGRFAM: UbiD family decarboxylase; PFAM: Carboxylyase-related protein; KEGG: chy:CHY_0681 3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein; UbiD family decarboxylase 420463 5676539 Clos_0365 Alkaliphilus oremlandii OhILAs UbiD family decarboxylase YP_001511923.1 419108 D 350688 CDS YP_001511924.1 158319417 5676540 420510..420776 1 NC_009922.1 PFAM: microcompartments protein; KEGG: lre:Lreu_1741 microcompartments protein; microcompartments protein 420776 5676540 Clos_0366 Alkaliphilus oremlandii OhILAs microcompartments protein YP_001511924.1 420510 D 350688 CDS YP_001511925.1 158319418 5676541 420795..421109 1 NC_009922.1 hypothetical protein 421109 5676541 Clos_0367 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511925.1 420795 D 350688 CDS YP_001511926.1 158319419 5676542 421122..421499 1 NC_009922.1 PFAM: microcompartments protein; KEGG: chy:CHY_0684 bacterial microcompartments family protein; microcompartments protein 421499 5676542 Clos_0368 Alkaliphilus oremlandii OhILAs microcompartments protein YP_001511926.1 421122 D 350688 CDS YP_001511927.1 158319420 5676543 421503..421778 1 NC_009922.1 PFAM: microcompartments protein; KEGG: amt:Amet_4577 microcompartments protein; microcompartments protein 421778 5676543 Clos_0369 Alkaliphilus oremlandii OhILAs microcompartments protein YP_001511927.1 421503 D 350688 CDS YP_001511928.1 158319421 5676544 421811..422230 1 NC_009922.1 hypothetical protein 422230 5676544 Clos_0370 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511928.1 421811 D 350688 CDS YP_001511929.1 158319422 5676545 422262..422552 1 NC_009922.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: amt:Amet_4575 ethanolamine utilization protein EutN/carboxysome structural protein CcmL; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 422552 5676545 Clos_0371 Alkaliphilus oremlandii OhILAs ethanolamine utilization protein EutN/carboxysome structural protein Ccml YP_001511929.1 422262 D 350688 CDS YP_001511930.1 158319423 5676546 422549..424357 1 NC_009922.1 KEGG: amt:Amet_4574 adenine deaminase; TIGRFAM: adenine deaminase; PFAM: amidohydrolase; Amidohydrolase 3; adenine deaminase 424357 5676546 Clos_0372 Alkaliphilus oremlandii OhILAs adenine deaminase YP_001511930.1 422549 D 350688 CDS YP_001511931.1 158319424 5676547 424476..425801 1 NC_009922.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: amt:Amet_4573 xanthine/uracil/vitamin C permease; xanthine/uracil/vitamin C permease 425801 5676547 Clos_0373 Alkaliphilus oremlandii OhILAs xanthine/uracil/vitamin C permease YP_001511931.1 424476 D 350688 CDS YP_001511932.1 158319425 5677169 425996..427330 1 NC_009922.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; N-ethylammeline chlorohydrolase 427330 5677169 Clos_0374 Alkaliphilus oremlandii OhILAs N-ethylammeline chlorohydrolase YP_001511932.1 425996 D 350688 CDS YP_001511933.1 158319426 5677170 427484..428371 1 NC_009922.1 PFAM: molybdopterin dehydrogenase FAD-binding; FAD linked oxidase domain protein; KEGG: amt:Amet_4571 molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase FAD-binding 428371 5677170 Clos_0375 Alkaliphilus oremlandii OhILAs molybdopterin dehydrogenase FAD-binding YP_001511933.1 427484 D 350688 CDS YP_001511934.1 158319427 5677171 428383..428859 1 NC_009922.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: amt:Amet_4570 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 428859 5677171 Clos_0376 Alkaliphilus oremlandii OhILAs 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001511934.1 428383 D 350688 CDS YP_001511935.1 158319428 5677172 428856..430112 1 NC_009922.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: amt:Amet_4569 aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase 430112 5677172 Clos_0377 Alkaliphilus oremlandii OhILAs aldehyde oxidase and xanthine dehydrogenase YP_001511935.1 428856 D 350688 CDS YP_001511936.1 158319429 5677173 430112..431098 1 NC_009922.1 KEGG: amt:Amet_4568 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 431098 5677173 Clos_0378 Alkaliphilus oremlandii OhILAs molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001511936.1 430112 D 350688 CDS YP_001511937.1 158319430 5677174 431142..432860 1 NC_009922.1 TIGRFAM: adenine deaminase; PFAM: amidohydrolase; KEGG: cac:CAC0887 adenine deaminase; adenine deaminase 432860 5677174 Clos_0379 Alkaliphilus oremlandii OhILAs adenine deaminase YP_001511937.1 431142 D 350688 CDS YP_001511938.1 158319431 5677175 432911..433723 1 NC_009922.1 KEGG: dsy:DSY0867 hypothetical protein; hypothetical protein 433723 5677175 Clos_0380 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511938.1 432911 D 350688 CDS YP_001511939.1 158319432 5677176 433705..434277 1 NC_009922.1 KEGG: cbo:CBO2891 hypothetical protein; hypothetical protein 434277 5677176 Clos_0381 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511939.1 433705 D 350688 CDS YP_001511940.1 158319433 5677177 434384..435196 1 NC_009922.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 435196 5677177 Clos_0382 Alkaliphilus oremlandii OhILAs S-adenosylmethionine decarboxylase YP_001511940.1 434384 D 350688 CDS YP_001511941.1 158319434 5676222 435215..436669 1 NC_009922.1 PFAM: aminotransferase class V; Orn/Lys/Arg decarboxylase major region; aromatic amino acid beta-eliminating lyase/threonine aldolase; Orn/Lys/Arg decarboxylase domain protein; KEGG: dsy:DSY0236 hypothetical protein; Orn/Lys/Arg decarboxylase major region 436669 5676222 Clos_0383 Alkaliphilus oremlandii OhILAs Orn/Lys/Arg decarboxylase major region YP_001511941.1 435215 D 350688 CDS YP_001511942.1 158319435 5676223 436670..437524 1 NC_009922.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 437524 5676223 Clos_0384 Alkaliphilus oremlandii OhILAs spermidine synthase YP_001511942.1 436670 D 350688 CDS YP_001511943.1 158319436 5676224 complement(437663..439132) 1 NC_009922.1 PFAM: chemotaxis sensory transducer; KEGG: ctc:CTC01155 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 439132 5676224 Clos_0385 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer YP_001511943.1 437663 R 350688 CDS YP_001511944.1 158319437 5676225 439401..439817 1 NC_009922.1 KEGG: tte:TTE1604 acyl-CoA hydrolase; acyl-CoA hydrolase 439817 5676225 Clos_0386 Alkaliphilus oremlandii OhILAs acyl-CoA hydrolase YP_001511944.1 439401 D 350688 CDS YP_001511945.1 158319438 5676226 complement(439954..440850) 1 NC_009922.1 KEGG: tde:TDE2679 hypothetical protein; hypothetical protein 440850 5676226 Clos_0387 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511945.1 439954 R 350688 CDS YP_001511946.1 158319439 5676227 complement(440926..441621) 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bcl:ABC3641 two-component response regulator; two component transcriptional regulator 441621 5676227 Clos_0388 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001511946.1 440926 R 350688 CDS YP_001511947.1 158319440 5676228 441856..443670 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cph:Cpha266_1787 PAS/PAC sensor hybrid histidine kinase; integral membrane sensor signal transduction histidine kinase 443670 5676228 Clos_0389 Alkaliphilus oremlandii OhILAs integral membrane sensor signal transduction histidine kinase YP_001511947.1 441856 D 350688 CDS YP_001511948.1 158319441 5676229 443766..445529 1 NC_009922.1 KEGG: fnu:FN0050 fumarate reductase flavoprotein subunit; TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; flavocytochrome c 445529 5676229 Clos_0390 Alkaliphilus oremlandii OhILAs flavocytochrome c YP_001511948.1 443766 D 350688 CDS YP_001511949.1 158319442 5676230 complement(445655..446674) 1 NC_009922.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cac:CAC3229 NADH:flavin oxidoreductase, Old Yellow enzyme family; NADH:flavin oxidoreductase 446674 5676230 Clos_0391 Alkaliphilus oremlandii OhILAs NADH:flavin oxidoreductase YP_001511949.1 445655 R 350688 CDS YP_001511950.1 158319443 5676300 complement(446793..447686) 1 NC_009922.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: cdf:CD3520 putative cation efflux protein; cation diffusion facilitator family transporter 447686 5676300 Clos_0392 Alkaliphilus oremlandii OhILAs cation diffusion facilitator family transporter YP_001511950.1 446793 R 350688 CDS YP_001511951.1 158319444 5676301 complement(447819..448334) 1 NC_009922.1 KEGG: cbo:CBO2919 tryptophan transport protein; tryptophan transport protein 448334 5676301 Clos_0393 Alkaliphilus oremlandii OhILAs tryptophan transport protein YP_001511951.1 447819 R 350688 CDS YP_001511952.1 158319445 5676302 449200..449688 1 NC_009922.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cac:CAC3572 biotin carboxyl carrier protein of acetyl-CoA carboxylase; acetyl-CoA carboxylase, biotin carboxyl carrier protein 449688 5676302 Clos_0394 Alkaliphilus oremlandii OhILAs acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_001511952.1 449200 D 350688 CDS YP_001511953.1 158319446 5676303 449695..451062 1 NC_009922.1 TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: cbo:CBO3596 biotin carboxylase; acetyl-CoA carboxylase, biotin carboxylase 451062 5676303 Clos_0395 Alkaliphilus oremlandii OhILAs acetyl-CoA carboxylase, biotin carboxylase YP_001511953.1 449695 D 350688 CDS YP_001511954.1 158319447 5676304 451064..451891 1 NC_009922.1 TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; KEGG: drm:Dred_2315 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; acetyl-CoA carboxylase, carboxyl transferase subunit beta 451891 5676304 Clos_0396 Alkaliphilus oremlandii OhILAs acetyl-CoA carboxylase, carboxyl transferase subunit beta YP_001511954.1 451064 D 350688 CDS YP_001511955.1 158319448 5676305 451884..452834 1 NC_009922.1 KEGG: bha:BH3165 acetyl-CoA carboxylase carboxyl transferase subunit alpha; TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase alpha subunit; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 452834 5676305 Clos_0397 Alkaliphilus oremlandii OhILAs acetyl-CoA carboxylase, carboxyl transferase subunit alpha YP_001511955.1 451884 D 350688 CDS YP_001511956.1 158319449 5676306 complement(453022..453837) 1 NC_009922.1 PFAM: Rhodanese domain protein; KEGG: oih:OB0532 thiosulfate sulfurtransferase; rhodanese domain-containing protein 453837 5676306 Clos_0398 Alkaliphilus oremlandii OhILAs rhodanese domain-containing protein YP_001511956.1 453022 R 350688 CDS YP_001511957.1 158319450 5676307 complement(453932..454600) 1 NC_009922.1 TIGRFAM: channel protein, hemolysin III family; PFAM: Hly-III family protein; KEGG: ctc:CTC00586 hemolysin III; hemolysin III family channel protein 454600 5676307 Clos_0399 Alkaliphilus oremlandii OhILAs hemolysin III family channel protein YP_001511957.1 453932 R 350688 CDS YP_001511958.1 158319451 5676308 454716..455591 1 NC_009922.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ade:Adeh_1435 protein of unknown function DUF6, transmembrane; hypothetical protein 455591 5676308 Clos_0400 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511958.1 454716 D 350688 CDS YP_001511959.1 158319452 5676281 455683..456612 1 NC_009922.1 PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: bld:BLi01397 YkfA; peptidase U61 LD-carboxypeptidase A 456612 5676281 Clos_0401 Alkaliphilus oremlandii OhILAs peptidase U61 LD-carboxypeptidase A YP_001511959.1 455683 D 350688 CDS YP_001511960.1 158319453 5676282 456612..457805 1 NC_009922.1 KEGG: tte:TTE0596 metal-dependent amidase/aminoacylase/carboxypeptidase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 457805 5676282 Clos_0402 Alkaliphilus oremlandii OhILAs amidohydrolase YP_001511960.1 456612 D 350688 CDS YP_001511961.1 158319454 5676283 457880..458440 1 NC_009922.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: ctc:CTC02303 formiminotetrahydrofolate cyclodeaminase; formiminotransferase-cyclodeaminase 458440 5676283 Clos_0403 Alkaliphilus oremlandii OhILAs formiminotransferase-cyclodeaminase YP_001511961.1 457880 D 350688 CDS YP_001511962.1 158319455 5676284 complement(458469..458948) 1 NC_009922.1 KEGG: dsy:DSY0802 hypothetical protein; hypothetical protein 458948 5676284 Clos_0404 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511962.1 458469 R 350688 CDS YP_001511963.1 158319456 5676285 complement(459083..460420) 1 NC_009922.1 PFAM: aminotransferase class V; KEGG: cbo:CBO0362 aminotransferase; cysteine desulfurase 460420 5676285 Clos_0405 Alkaliphilus oremlandii OhILAs cysteine desulfurase YP_001511963.1 459083 R 350688 CDS YP_001511964.1 158319457 5676286 460573..460968 1 NC_009922.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: gsu:GSU2929 hypothetical protein; hemerythrin-like metal-binding protein 460968 5676286 Clos_0406 Alkaliphilus oremlandii OhILAs hemerythrin-like metal-binding protein YP_001511964.1 460573 D 350688 CDS YP_001511965.1 158319458 5676287 complement(461121..462146) 1 NC_009922.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 462146 5676287 Clos_0407 Alkaliphilus oremlandii OhILAs branched-chain amino acid aminotransferase YP_001511965.1 461121 R 350688 CDS YP_001511966.1 158319459 5676288 complement(462296..463438) 1 NC_009922.1 PFAM: glycoside hydrolase family 18; Peptidoglycan-binding LysM; SMART: chitinase II; KEGG: cac:CAC2747 protein containing LysM repeats (N-terminal domain) and domain related to chitinase; glycoside hydrolase family protein 463438 5676288 Clos_0408 Alkaliphilus oremlandii OhILAs glycoside hydrolase family protein YP_001511966.1 462296 R 350688 CDS YP_001511967.1 158319460 5676289 463708..464088 1 NC_009922.1 KEGG: mta:Moth_0522 hypothetical protein; hypothetical protein 464088 5676289 Clos_0409 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511967.1 463708 D 350688 CDS YP_001511968.1 158319461 5676530 464085..464939 1 NC_009922.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; KEGG: drm:Dred_1016 diguanylate cyclase; diguanylate cyclase 464939 5676530 Clos_0410 Alkaliphilus oremlandii OhILAs diguanylate cyclase YP_001511968.1 464085 D 350688 CDS YP_001511969.1 158319462 5676531 465099..466241 1 NC_009922.1 PFAM: putative RNA methylase; THUMP domain protein; KEGG: drm:Dred_2939 putative RNA methylase; putative RNA methylase 466241 5676531 Clos_0411 Alkaliphilus oremlandii OhILAs putative RNA methylase YP_001511969.1 465099 D 350688 CDS YP_001511970.1 158319463 5676532 466319..466552 1 NC_009922.1 KEGG: bsu:BG12731 hypothetical protein; hypothetical protein 466552 5676532 Clos_0412 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511970.1 466319 D 350688 CDS YP_001511971.1 158319464 5676533 466591..466974 1 NC_009922.1 hypothetical protein 466974 5676533 Clos_0413 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511971.1 466591 D 350688 CDS YP_001511972.1 158319465 5676534 467095..467637 1 NC_009922.1 PFAM: NADPH-dependent FMN reductase; KEGG: oih:OB1038 chromate reductase; NADPH-dependent FMN reductase 467637 5676534 Clos_0414 Alkaliphilus oremlandii OhILAs NADPH-dependent FMN reductase YP_001511972.1 467095 D 350688 CDS YP_001511973.1 158319466 5676535 467822..468637 1 NC_009922.1 PFAM: metallophosphoesterase; KEGG: bce:BC2476 phosphoesterase; metallophosphoesterase 468637 5676535 Clos_0415 Alkaliphilus oremlandii OhILAs metallophosphoesterase YP_001511973.1 467822 D 350688 CDS YP_001511974.1 158319467 5676536 468814..470226 1 NC_009922.1 KEGG: tte:TTE0717 NtrC family transcriptional regulator, ATPase domain; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; PAS modulated sigma54 specific transcriptional regulator 470226 5676536 Clos_0416 Alkaliphilus oremlandii OhILAs PAS modulated sigma54 specific transcriptional regulator YP_001511974.1 468814 D 350688 CDS YP_001511975.1 158319468 5676537 470471..471508 1 NC_009922.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; KEGG: pgi:PG1069 alcohol dehydrogenase, zinc-containing, putative; alcohol dehydrogenase 471508 5676537 Clos_0417 Alkaliphilus oremlandii OhILAs alcohol dehydrogenase YP_001511975.1 470471 D 350688 CDS YP_001511976.1 158319469 5676538 471571..472821 1 NC_009922.1 KEGG: fnu:FN1866 lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; lysine 2,3-aminomutase YodO family protein 472821 5676538 Clos_0418 Alkaliphilus oremlandii OhILAs lysine 2,3-aminomutase YodO family protein YP_001511976.1 471571 D 350688 CDS YP_001511977.1 158319470 5677021 472905..473936 1 NC_009922.1 KEGG: tte:TTE0724 hypothetical protein; hypothetical protein 473936 5677021 Clos_0419 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511977.1 472905 D 350688 CDS YP_001511978.1 158319471 5677022 473940..475472 1 NC_009922.1 PFAM: DNA mismatch repair protein MutS domain protein; KEGG: tte:TTE0725 MutS-like ATPase involved in mismatch repair, family 2; DNA mismatch repair protein MutS domain-containing protein 475472 5677022 Clos_0420 Alkaliphilus oremlandii OhILAs DNA mismatch repair protein MutS domain-containing protein YP_001511978.1 473940 D 350688 CDS YP_001511979.1 158319472 5677023 475484..477037 1 NC_009922.1 PFAM: D-Lysine 56-aminomutase alpha subunit; KEGG: tte:TTE0726 D-lysine 5,6-aminomutase alpha subunit; D-lysine 56-aminomutase alpha subunit 477037 5677023 Clos_0421 Alkaliphilus oremlandii OhILAs D-lysine 56-aminomutase alpha subunit YP_001511979.1 475484 D 350688 CDS YP_001511980.1 158319473 5677024 477039..477794 1 NC_009922.1 PFAM: cobalamin B12-binding domain protein; KEGG: pgi:PG1074 D-lysine 5,6-aminomutase, beta subunit; cobalamin B12-binding domain-containing protein 477794 5677024 Clos_0422 Alkaliphilus oremlandii OhILAs cobalamin B12-binding domain-containing protein YP_001511980.1 477039 D 350688 CDS YP_001511981.1 158319474 5677025 478041..478349 1 NC_009922.1 hypothetical protein 478349 5677025 Clos_0423 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511981.1 478041 D 350688 CDS YP_001511982.1 158319475 5677026 478539..479096 1 NC_009922.1 KEGG: tte:TTE2363 hypothetical protein; hypothetical protein 479096 5677026 Clos_0424 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511982.1 478539 D 350688 CDS YP_001511983.1 158319476 5677027 479121..479585 1 NC_009922.1 KEGG: tte:TTE2362 hypothetical protein; hypothetical protein 479585 5677027 Clos_0425 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511983.1 479121 D 350688 CDS YP_001511984.1 158319477 5677028 480190..480915 1 NC_009922.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: cdf:CD1089 two-component response regulator; LytTR family two component transcriptional regulator 480915 5677028 Clos_0426 Alkaliphilus oremlandii OhILAs LytTR family two component transcriptional regulator YP_001511984.1 480190 D 350688 CDS YP_001511985.1 158319478 5677029 480979..482325 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; KEGG: cbo:CBO1052 two-component sensor kinase; signal transduction histidine kinase regulating citrate/malate metabolism 482325 5677029 Clos_0427 Alkaliphilus oremlandii OhILAs signal transduction histidine kinase regulating citrate/malate metabolism YP_001511985.1 480979 D 350688 CDS YP_001511986.1 158319479 5678236 482516..483121 1 NC_009922.1 PFAM: Accessory gene regulator B; KEGG: cth:Cthe_1310 accessory gene regulator B; accessory gene regulator B 483121 5678236 Clos_0428 Alkaliphilus oremlandii OhILAs accessory gene regulator B YP_001511986.1 482516 D 350688 CDS YP_001511987.1 158319480 5678237 483416..484150 1 NC_009922.1 KEGG: bha:BH0079 hypothetical protein; hypothetical protein 484150 5678237 Clos_0429 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511987.1 483416 D 350688 CDS YP_001511988.1 158319481 5678238 484266..485171 1 NC_009922.1 SMART: serine/threonine protein kinase; KEGG: bsu:BG10129 probable serine/threonine-protein kinase; serine/threonine protein kinase 485171 5678238 Clos_0430 Alkaliphilus oremlandii OhILAs serine/threonine protein kinase YP_001511988.1 484266 D 350688 CDS YP_001511989.1 158319482 5678239 485269..486660 1 NC_009922.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: ExsB family protein; PP-loop domain protein; Protein of unkown function DUF1946 PP-loop ATpase; KEGG: cdf:CD3560 putative ATPase; tRNA(Ile)-lysidine synthetase 486660 5678239 Clos_0431 Alkaliphilus oremlandii OhILAs tRNA(Ile)-lysidine synthetase YP_001511989.1 485269 D 350688 CDS YP_001511990.1 158319483 5678240 486756..488711 1 NC_009922.1 KEGG: cdf:CD3559 cell division protein; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 488711 5678240 Clos_0432 Alkaliphilus oremlandii OhILAs ATP-dependent metalloprotease FtsH YP_001511990.1 486756 D 350688 CDS YP_001511991.1 158319484 5678241 489103..490491 1 NC_009922.1 TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain protein; KEGG: cdf:CD2344 hypothetical protein; YidE/YbjL duplication 490491 5678241 Clos_0433 Alkaliphilus oremlandii OhILAs YidE/YbjL duplication YP_001511991.1 489103 D 350688 CDS YP_001511992.1 158319485 5678242 490576..490905 1 NC_009922.1 KEGG: gtn:GTNG_3178 hypothetical protein; hypothetical protein 490905 5678242 Clos_0434 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001511992.1 490576 D 350688 CDS YP_001511993.1 158319486 5678243 491094..492638 1 NC_009922.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: cdf:CD2343 succinyl-CoA:coenzyme A transferase; Acetyl-CoA hydrolase 492638 5678243 Clos_0435 Alkaliphilus oremlandii OhILAs Acetyl-CoA hydrolase YP_001511993.1 491094 D 350688 CDS YP_001511994.1 158319487 5678244 493029..494708 1 NC_009922.1 KEGG: tte:TTE1217 Methylmalonyl-CoA mutase, N-terminal domain/subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; methylmalonyl-CoA mutase large subunit 494708 5678244 Clos_0436 Alkaliphilus oremlandii OhILAs methylmalonyl-CoA mutase large subunit YP_001511994.1 493029 D 350688 CDS YP_001511995.1 158319488 5678368 494767..495165 1 NC_009922.1 PFAM: cobalamin B12-binding domain protein; KEGG: tte:TTE2388 methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding); cobalamin B12-binding domain-containing protein 495165 5678368 Clos_0437 Alkaliphilus oremlandii OhILAs cobalamin B12-binding domain-containing protein YP_001511995.1 494767 D 350688 CDS YP_001511996.1 158319489 5678369 495211..496152 1 NC_009922.1 KEGG: tte:TTE2387 putative periplasmic protein kinase ArgK and related GTPases of G3E family; TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; SMART: AAA ATPase; LAO/AO transport system ATPase 496152 5678369 Clos_0438 Alkaliphilus oremlandii OhILAs LAO/AO transport system ATPase YP_001511996.1 495211 D 350688 CDS YP_001511997.1 158319490 5678370 496175..496582 1 NC_009922.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pth:PTH_1363 methylmalonyl-CoA epimerase; glyoxalase/bleomycin resistance protein/dioxygenase 496582 5678370 Clos_0439 Alkaliphilus oremlandii OhILAs glyoxalase/bleomycin resistance protein/dioxygenase YP_001511997.1 496175 D 350688 CDS YP_001511998.1 158319491 5678371 496585..498132 1 NC_009922.1 PFAM: carboxyl transferase; KEGG: tte:TTE2385 Acetyl-CoA carboxylase alpha subunit; carboxyl transferase 498132 5678371 Clos_0440 Alkaliphilus oremlandii OhILAs carboxyl transferase YP_001511998.1 496585 D 350688 CDS YP_001511999.1 158319492 5678372 498163..498555 1 NC_009922.1 TIGRFAM: sodium pump decarboxylase, gamma subunit; PFAM: sodium pump decarboxylase gamma subunit; sodium pump decarboxylase, gamma subunit 498555 5678372 Clos_0441 Alkaliphilus oremlandii OhILAs sodium pump decarboxylase, gamma subunit YP_001511999.1 498163 D 350688 CDS YP_001512000.1 158319493 5678373 498615..498998 1 NC_009922.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: cth:Cthe_0700 biotin/lipoyl attachment protein; biotin/lipoyl attachment domain-containing protein 498998 5678373 Clos_0442 Alkaliphilus oremlandii OhILAs biotin/lipoyl attachment domain-containing protein YP_001512000.1 498615 D 350688 CDS YP_001512001.1 158319494 5678374 499103..500167 1 NC_009922.1 KEGG: csc:Csac_2482 sodium ion-translocating decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl-CoA/oxaloacetate decarboxylase beta subunit; sodium ion-translocating decarboxylase subunit beta 500167 5678374 Clos_0443 Alkaliphilus oremlandii OhILAs sodium ion-translocating decarboxylase subunit beta YP_001512001.1 499103 D 350688 CDS YP_001512002.1 158319495 5678375 500402..501382 1 NC_009922.1 KEGG: cno:NT01CX_0898 BirA bifunctional protein, putative; TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin protein ligase domain protein; biotin/lipoate A/B protein ligase; Helix-turn-helix type 11 domain protein; biotin--acetyl-CoA-carboxylase ligase 501382 5678375 Clos_0444 Alkaliphilus oremlandii OhILAs biotin--acetyl-CoA-carboxylase ligase YP_001512002.1 500402 D 350688 CDS YP_001512003.1 158319496 5678376 501560..502069 1 NC_009922.1 KEGG: tte:TTE2382 membrane protein; membrane protein 502069 5678376 Clos_0445 Alkaliphilus oremlandii OhILAs membrane protein YP_001512003.1 501560 D 350688 CDS YP_001512004.1 158319497 5677076 502101..502898 1 NC_009922.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 502898 5677076 Clos_0446 Alkaliphilus oremlandii OhILAs pantothenate kinase YP_001512004.1 502101 D 350688 CDS YP_001512005.1 158319498 5677077 502960..503934 1 NC_009922.1 TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; dihydroorotate dehydrogenase; KEGG: cdf:CD3554 tRNA-dihydrouridine synthase; nifR3 family TIM-barrel protein 503934 5677077 Clos_0447 Alkaliphilus oremlandii OhILAs nifR3 family TIM-barrel protein YP_001512005.1 502960 D 350688 CDS YP_001512006.1 158319499 5677078 504023..504946 1 NC_009922.1 KEGG: tte:TTE2375 hypothetical protein; hypothetical protein 504946 5677078 Clos_0448 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512006.1 504023 D 350688 CDS YP_001512007.1 158319500 5677079 505333..505812 1 NC_009922.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 505812 greA 5677079 greA Alkaliphilus oremlandii OhILAs transcription elongation factor GreA YP_001512007.1 505333 D 350688 CDS YP_001512008.1 158319501 5677080 505828..507315 1 NC_009922.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: cdf:CD3552 lysyl-tRNA synthetase; lysyl-tRNA synthetase 507315 5677080 Clos_0450 Alkaliphilus oremlandii OhILAs lysyl-tRNA synthetase YP_001512008.1 505828 D 350688 CDS YP_001512009.1 158319502 5678015 512797..513309 1 NC_009922.1 KEGG: tte:TTE2338 hypothetical protein; hypothetical protein 513309 5678015 Clos_0451 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512009.1 512797 D 350688 CDS YP_001512010.1 158319503 5678016 513703..516057 1 NC_009922.1 KEGG: rrs:RoseRS_4577 ribonucleoside-triphosphate reductase; TIGRFAM: ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent; PFAM: ATP-cone domain protein; ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent 516057 5678016 Clos_0452 Alkaliphilus oremlandii OhILAs ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent YP_001512010.1 513703 D 350688 CDS YP_001512011.1 158319504 5678017 complement(516103..518169) 1 NC_009922.1 TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: tte:TTE2333 translation elongation and release factors (GTPases); translation elongation factor G 518169 5678017 Clos_0453 Alkaliphilus oremlandii OhILAs translation elongation factor G YP_001512011.1 516103 R 350688 CDS YP_001512012.1 158319505 5678018 518566..519072 1 NC_009922.1 PFAM: UvrB/UvrC protein; KEGG: mta:Moth_0160 UvrB/UvrC protein; UvrB/UvrC protein 519072 5678018 Clos_0454 Alkaliphilus oremlandii OhILAs UvrB/UvrC protein YP_001512012.1 518566 D 350688 CDS YP_001512013.1 158319506 5678019 519083..520105 1 NC_009922.1 PFAM: ATP:guanido phosphotransferase; KEGG: gka:GK0077 creatine kinase; ATP:guanido phosphotransferase 520105 5678019 Clos_0455 Alkaliphilus oremlandii OhILAs ATP:guanido phosphotransferase YP_001512013.1 519083 D 350688 CDS YP_001512014.1 158319507 5678020 520136..522577 1 NC_009922.1 PFAM: UvrB/UvrC protein; AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: tte:TTE2327 ATPases with chaperone activity, ATP-binding subunit; ATPase 522577 5678020 Clos_0456 Alkaliphilus oremlandii OhILAs ATPase YP_001512014.1 520136 D 350688 CDS YP_001512015.1 158319508 5678021 522707..524077 1 NC_009922.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 524077 5678021 Clos_0457 Alkaliphilus oremlandii OhILAs DNA repair protein RadA YP_001512015.1 522707 D 350688 CDS YP_001512016.1 158319509 5677885 524187..525263 1 NC_009922.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA 525263 5677885 Clos_0458 Alkaliphilus oremlandii OhILAs DNA integrity scanning protein DisA YP_001512016.1 524187 D 350688 CDS YP_001512017.1 158319510 5677886 complement(525631..526026) 1 NC_009922.1 KEGG: tte:TTE2324 hypothetical protein; hypothetical protein 526026 5677886 Clos_0459 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512017.1 525631 R 350688 CDS YP_001512018.1 158319511 5677887 526414..526917 1 NC_009922.1 PFAM: transcription factor CarD; KEGG: drm:Dred_0185 transcriptional regulator, CarD family; CarD family transcriptional regulator 526917 5677887 Clos_0460 Alkaliphilus oremlandii OhILAs CarD family transcriptional regulator YP_001512018.1 526414 D 350688 CDS YP_001512019.1 158319512 5677888 527079..528185 1 NC_009922.1 PFAM: PilT protein domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Nucleotide binding protein PINc; KEGG: cdf:CD0029 hypothetical protein; PilT domain-containing protein 528185 5677888 Clos_0461 Alkaliphilus oremlandii OhILAs PilT domain-containing protein YP_001512019.1 527079 D 350688 CDS YP_001512020.1 158319513 5677889 528330..529184 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; nitrite and sulphite reductase 4Fe-4S region; Proto-chlorophyllide reductase 57 kD subunit; KEGG: ctc:CTC01213 anaerobic sulfite reductase subunit C; nitrite and sulfite reductase 4Fe-4S region 529184 5677889 Clos_0462 Alkaliphilus oremlandii OhILAs nitrite and sulfite reductase 4Fe-4S region YP_001512020.1 528330 D 350688 CDS YP_001512021.1 158319514 5677890 529215..529925 1 NC_009922.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 529925 ispD 5677890 ispD Alkaliphilus oremlandii OhILAs 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001512021.1 529215 D 350688 CDS YP_001512022.1 158319515 5677891 529927..530400 1 NC_009922.1 KEGG: cpf:CPF_2616 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 530400 5677891 Clos_0464 Alkaliphilus oremlandii OhILAs 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_001512022.1 529927 D 350688 CDS YP_001512023.1 158319516 5677892 530826..532268 1 NC_009922.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 532268 5677892 Clos_0465 Alkaliphilus oremlandii OhILAs prolyl-tRNA synthetase YP_001512023.1 530826 D 350688 CDS YP_001512024.1 158319517 5677893 532475..533353 1 NC_009922.1 PFAM: protein of unknown function DUF1002; KEGG: tte:TTE1117 hypothetical protein; hypothetical protein 533353 5677893 Clos_0466 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512024.1 532475 D 350688 CDS YP_001512025.1 158319518 5677003 533439..534926 1 NC_009922.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 534926 gltX 5677003 gltX Alkaliphilus oremlandii OhILAs glutamyl-tRNA synthetase YP_001512025.1 533439 D 350688 CDS YP_001512026.1 158319519 5677004 535248..535913 1 NC_009922.1 TIGRFAM: serine O-acetyltransferase; KEGG: tte:TTE2316 serine acetyltransferase; serine O-acetyltransferase 535913 5677004 Clos_0468 Alkaliphilus oremlandii OhILAs serine O-acetyltransferase YP_001512026.1 535248 D 350688 CDS YP_001512027.1 158319520 5677005 535913..537307 1 NC_009922.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 537307 cysS 5677005 cysS Alkaliphilus oremlandii OhILAs cysteinyl-tRNA synthetase YP_001512027.1 535913 D 350688 CDS YP_001512028.1 158319521 5677006 537325..537774 1 NC_009922.1 PFAM: ribonuclease III; KEGG: cdf:CD0053 hypothetical protein; ribonuclease III 537774 5677006 Clos_0470 Alkaliphilus oremlandii OhILAs ribonuclease III YP_001512028.1 537325 D 350688 CDS YP_001512029.1 158319522 5677007 537767..538144 1 NC_009922.1 hypothetical protein 538144 5677007 Clos_0471 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512029.1 537767 D 350688 CDS YP_001512030.1 158319523 5677008 538134..538916 1 NC_009922.1 flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase 538916 thyX 5677008 thyX Alkaliphilus oremlandii OhILAs FAD-dependent thymidylate synthase YP_001512030.1 538134 D 350688 CDS YP_001512031.1 158319524 5677009 538945..539697 1 NC_009922.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cdf:CD0055 putative tRNA/rRNA methyltransferase; RNA methyltransferase 539697 5677009 Clos_0473 Alkaliphilus oremlandii OhILAs RNA methyltransferase YP_001512031.1 538945 D 350688 CDS YP_001512032.1 158319525 5677010 539709..540221 1 NC_009922.1 PFAM: protein of unknown function DUF901; KEGG: cdf:CD0056 hypothetical protein; hypothetical protein 540221 5677010 Clos_0474 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512032.1 539709 D 350688 CDS YP_001512033.1 158319526 5677011 540306..540947 1 NC_009922.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 540947 5677011 Clos_0475 Alkaliphilus oremlandii OhILAs RNA polymerase factor sigma-70 YP_001512033.1 540306 D 350688 CDS YP_001512034.1 158319527 5677440 541105..542298 1 NC_009922.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 542298 5677440 Clos_0476 Alkaliphilus oremlandii OhILAs elongation factor Tu YP_001512034.1 541105 D 350688 CDS YP_001512035.1 158319528 5677441 542533..542682 1 NC_009922.1 PFAM: ribosomal protein L33; KEGG: cpr:CPR_2415 ribosomal protein L33; 50S ribosomal protein L33 542682 5677441 Clos_0477 Alkaliphilus oremlandii OhILAs 50S ribosomal protein L33 YP_001512035.1 542533 D 350688 CDS YP_001512036.1 158319529 5677442 542723..542938 1 NC_009922.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: drm:Dred_0201 preprotein translocase, SecE subunit; Preprotein translocase subunit SecE 542938 5677442 Clos_0478 Alkaliphilus oremlandii OhILAs Preprotein translocase subunit SecE YP_001512036.1 542723 D 350688 CDS YP_001512037.1 158319530 5677443 542997..543515 1 NC_009922.1 KEGG: cno:NT01CX_1102 transcription termination/antitermination factor NusG; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: transcription antitermination protein NusG; KOW domain protein; SMART: NGN domain protein; KOW (Kyrpides Ouzounis Woese) domain protein; NusG antitermination factor 543515 5677443 Clos_0479 Alkaliphilus oremlandii OhILAs NusG antitermination factor YP_001512037.1 542997 D 350688 CDS YP_001512038.1 158319531 5677444 543595..544020 1 NC_009922.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 544020 rplK 5677444 rplK Alkaliphilus oremlandii OhILAs 50S ribosomal protein L11 YP_001512038.1 543595 D 350688 CDS YP_001512039.1 158319532 5677445 544091..544789 1 NC_009922.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 544789 rplA 5677445 rplA Alkaliphilus oremlandii OhILAs 50S ribosomal protein L1 YP_001512039.1 544091 D 350688 CDS YP_001512040.1 158319533 5677446 545042..545545 1 NC_009922.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 545545 rplJ 5677446 rplJ Alkaliphilus oremlandii OhILAs 50S ribosomal protein L10 YP_001512040.1 545042 D 350688 CDS YP_001512041.1 158319534 5677447 545606..545971 1 NC_009922.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 545971 rplL 5677447 rplL Alkaliphilus oremlandii OhILAs 50S ribosomal protein L7/L12 YP_001512041.1 545606 D 350688 CDS YP_001512042.1 158319535 5677448 546551..550276 1 NC_009922.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 550276 rpoB 5677448 rpoB Alkaliphilus oremlandii OhILAs DNA-directed RNA polymerase subunit beta YP_001512042.1 546551 D 350688 CDS YP_001512043.1 158319536 5677057 550374..553913 1 NC_009922.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 553913 5677057 Clos_0485 Alkaliphilus oremlandii OhILAs DNA-directed RNA polymerase subunit beta' YP_001512043.1 550374 D 350688 CDS YP_001512044.1 158319537 5677058 554042..554284 1 NC_009922.1 KEGG: cth:Cthe_2726 ribosomal protein L7Ae/L30e/S12e/Gadd45; ribosomal protein L7Ae/L30e/S12e/Gadd45 554284 5677058 Clos_0486 Alkaliphilus oremlandii OhILAs ribosomal protein L7Ae/L30e/S12e/Gadd45 YP_001512044.1 554042 D 350688 CDS YP_001512045.1 158319538 5677059 554446..554868 1 NC_009922.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 554868 rpsL 5677059 rpsL Alkaliphilus oremlandii OhILAs 30S ribosomal protein S12 YP_001512045.1 554446 D 350688 CDS YP_001512046.1 158319539 5677060 554994..555464 1 NC_009922.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 555464 5677060 Clos_0488 Alkaliphilus oremlandii OhILAs 30S ribosomal protein S7 YP_001512046.1 554994 D 350688 CDS YP_001512047.1 158319540 5677061 555545..557617 1 NC_009922.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 557617 5677061 Clos_0489 Alkaliphilus oremlandii OhILAs elongation factor G YP_001512047.1 555545 D 350688 CDS YP_001512048.1 158319541 5677062 557737..558930 1 NC_009922.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 558930 5677062 Clos_0490 Alkaliphilus oremlandii OhILAs elongation factor Tu YP_001512048.1 557737 D 350688 CDS YP_001512049.1 158319542 5677063 559256..559570 1 NC_009922.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 559570 rpsJ 5677063 rpsJ Alkaliphilus oremlandii OhILAs 30S ribosomal protein S10 YP_001512049.1 559256 D 350688 CDS YP_001512050.1 158319543 5677064 559665..560297 1 NC_009922.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 560297 rplC 5677064 rplC Alkaliphilus oremlandii OhILAs 50S ribosomal protein L3 YP_001512050.1 559665 D 350688 CDS YP_001512051.1 158319544 5677065 560324..560947 1 NC_009922.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 560947 rplD 5677065 rplD Alkaliphilus oremlandii OhILAs 50S ribosomal protein L4 YP_001512051.1 560324 D 350688 CDS YP_001512052.1 158319545 5676175 560947..561237 1 NC_009922.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 561237 rplW 5676175 rplW Alkaliphilus oremlandii OhILAs 50S ribosomal protein L23 YP_001512052.1 560947 D 350688 CDS YP_001512053.1 158319546 5676176 561272..562102 1 NC_009922.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 562102 rplB 5676176 rplB Alkaliphilus oremlandii OhILAs 50S ribosomal protein L2 YP_001512053.1 561272 D 350688 CDS YP_001512054.1 158319547 5676177 562148..562429 1 NC_009922.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 562429 rpsS 5676177 rpsS Alkaliphilus oremlandii OhILAs 30S ribosomal protein S19 YP_001512054.1 562148 D 350688 CDS YP_001512055.1 158319548 5676178 562461..562793 1 NC_009922.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 562793 rplV 5676178 rplV Alkaliphilus oremlandii OhILAs 50S ribosomal protein L22 YP_001512055.1 562461 D 350688 CDS YP_001512056.1 158319549 5676179 562812..563528 1 NC_009922.1 KEGG: cth:Cthe_2909 ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; 30S ribosomal protein S3 563528 5676179 Clos_0498 Alkaliphilus oremlandii OhILAs 30S ribosomal protein S3 YP_001512056.1 562812 D 350688 CDS YP_001512057.1 158319550 5676180 563561..564004 1 NC_009922.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 564004 rplP 5676180 rplP Alkaliphilus oremlandii OhILAs 50S ribosomal protein L16 YP_001512057.1 563561 D 350688 CDS YP_001512058.1 158319551 5676181 563994..564197 1 NC_009922.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 564197 5676181 Clos_0500 Alkaliphilus oremlandii OhILAs 50S ribosomal protein L29 YP_001512058.1 563994 D 350688 CDS YP_001512059.1 158319552 5676182 564232..564486 1 NC_009922.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 564486 rpsQ 5676182 rpsQ Alkaliphilus oremlandii OhILAs 30S ribosomal protein S17 YP_001512059.1 564232 D 350688 CDS YP_001512060.1 158319553 5676183 564513..564881 1 NC_009922.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 564881 rplN 5676183 rplN Alkaliphilus oremlandii OhILAs 50S ribosomal protein L14 YP_001512060.1 564513 D 350688 CDS YP_001512061.1 158319554 5675845 564900..565208 1 NC_009922.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 565208 rplX 5675845 rplX Alkaliphilus oremlandii OhILAs 50S ribosomal protein L24 YP_001512061.1 564900 D 350688 CDS YP_001512062.1 158319555 5675846 565237..565776 1 NC_009922.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 565776 rplE 5675846 rplE Alkaliphilus oremlandii OhILAs 50S ribosomal protein L5 YP_001512062.1 565237 D 350688 CDS YP_001512063.1 158319556 5675847 565789..565974 1 NC_009922.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 565974 rpsN 5675847 rpsN Alkaliphilus oremlandii OhILAs 30S ribosomal protein S14 YP_001512063.1 565789 D 350688 CDS YP_001512064.1 158319557 5675848 565998..566396 1 NC_009922.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 566396 rpsH 5675848 rpsH Alkaliphilus oremlandii OhILAs 30S ribosomal protein S8 YP_001512064.1 565998 D 350688 CDS YP_001512065.1 158319558 5675849 566426..566965 1 NC_009922.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 566965 rplF 5675849 rplF Alkaliphilus oremlandii OhILAs 50S ribosomal protein L6 YP_001512065.1 566426 D 350688 CDS YP_001512066.1 158319559 5675850 566985..567353 1 NC_009922.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 567353 rplR 5675850 rplR Alkaliphilus oremlandii OhILAs 50S ribosomal protein L18 YP_001512066.1 566985 D 350688 CDS YP_001512067.1 158319560 5675851 567372..567878 1 NC_009922.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 567878 rpsE 5675851 rpsE Alkaliphilus oremlandii OhILAs 30S ribosomal protein S5 YP_001512067.1 567372 D 350688 CDS YP_001512068.1 158319561 5675852 567892..568071 1 NC_009922.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 568071 rpmD 5675852 rpmD Alkaliphilus oremlandii OhILAs 50S ribosomal protein L30 YP_001512068.1 567892 D 350688 CDS YP_001512069.1 158319562 5675853 568090..568533 1 NC_009922.1 late assembly protein; 50S ribosomal protein L15 568533 rplO 5675853 rplO Alkaliphilus oremlandii OhILAs 50S ribosomal protein L15 YP_001512069.1 568090 D 350688 CDS YP_001512070.1 158319563 5677837 568535..569809 1 NC_009922.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: tte:TTE2272 preprotein translocase subunit SecY; preprotein translocase subunit SecY 569809 5677837 Clos_0512 Alkaliphilus oremlandii OhILAs preprotein translocase subunit SecY YP_001512070.1 568535 D 350688 CDS YP_001512071.1 158319564 5677838 569871..570521 1 NC_009922.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 570521 adk 5677838 adk Alkaliphilus oremlandii OhILAs adenylate kinase YP_001512071.1 569871 D 350688 CDS YP_001512072.1 158319565 5677839 570521..571267 1 NC_009922.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: cdf:CD0092 methionine aminopeptidase; methionine aminopeptidase 571267 5677839 Clos_0514 Alkaliphilus oremlandii OhILAs methionine aminopeptidase YP_001512072.1 570521 D 350688 CDS YP_001512073.1 158319566 5677840 571289..571567 1 NC_009922.1 KEGG: tte:TTE2269 hypothetical protein; hypothetical protein 571567 5677840 Clos_0515 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512073.1 571289 D 350688 CDS YP_001512074.1 158319567 5677841 571594..571812 1 NC_009922.1 TIGRFAM: translation initiation factor IF-1; PFAM: RNA binding S1 domain protein; S1 IF1 family protein; KEGG: cth:Cthe_2927 translation initiation factor IF-1; translation initiation factor IF-1 571812 5677841 Clos_0516 Alkaliphilus oremlandii OhILAs translation initiation factor IF-1 YP_001512074.1 571594 D 350688 CDS YP_001512075.1 158319568 5677842 571829..571942 1 NC_009922.1 PFAM: ribosomal protein L36; KEGG: cpr:CPR_2374 ribosomal protein L36; 50S ribosomal protein L36 571942 5677842 Clos_0517 Alkaliphilus oremlandii OhILAs 50S ribosomal protein L36 YP_001512075.1 571829 D 350688 CDS YP_001512076.1 158319569 5677843 572166..572537 1 NC_009922.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 572537 rpsM 5677843 rpsM Alkaliphilus oremlandii OhILAs 30S ribosomal protein S13 YP_001512076.1 572166 D 350688 CDS YP_001512077.1 158319570 5677844 572560..572961 1 NC_009922.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 572961 5677844 Clos_0519 Alkaliphilus oremlandii OhILAs 30S ribosomal protein S11 YP_001512077.1 572560 D 350688 CDS YP_001512078.1 158319571 5677845 572984..573607 1 NC_009922.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 573607 rpsD 5677845 rpsD Alkaliphilus oremlandii OhILAs 30S ribosomal protein S4 YP_001512078.1 572984 D 350688 CDS YP_001512079.1 158319572 5677791 573670..574623 1 NC_009922.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 574623 5677791 Clos_0521 Alkaliphilus oremlandii OhILAs DNA-directed RNA polymerase subunit alpha YP_001512079.1 573670 D 350688 CDS YP_001512080.1 158319573 5677792 574646..574987 1 NC_009922.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 574987 rplQ 5677792 rplQ Alkaliphilus oremlandii OhILAs 50S ribosomal protein L17 YP_001512080.1 574646 D 350688 CDS YP_001512081.1 158319574 5677793 575329..576168 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4447 ABC transporter related; ABC transporter 576168 5677793 Clos_0523 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512081.1 575329 D 350688 CDS YP_001512082.1 158319575 5677794 576153..577016 1 NC_009922.1 with CbiNQ forms the ABC transporter for cobalt import; Clostridia have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 577016 cbiO 5677794 cbiO Alkaliphilus oremlandii OhILAs cobalt transporter ATP-binding subunit YP_001512082.1 576153 D 350688 CDS YP_001512083.1 158319576 5677795 577009..577809 1 NC_009922.1 PFAM: cobalt transport protein; KEGG: amt:Amet_4445 cobalt transport protein; cobalt transport protein 577809 5677795 Clos_0525 Alkaliphilus oremlandii OhILAs cobalt transport protein YP_001512083.1 577009 D 350688 CDS YP_001512084.1 158319577 5677796 577835..578581 1 NC_009922.1 KEGG: amt:Amet_4444 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 578581 5677796 Clos_0526 Alkaliphilus oremlandii OhILAs tRNA pseudouridine synthase A YP_001512084.1 577835 D 350688 CDS YP_001512085.1 158319578 5677797 578704..579135 1 NC_009922.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 579135 rplM 5677797 rplM Alkaliphilus oremlandii OhILAs 50S ribosomal protein L13 YP_001512085.1 578704 D 350688 CDS YP_001512086.1 158319579 5677798 579160..579552 1 NC_009922.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 579552 rpsI 5677798 rpsI Alkaliphilus oremlandii OhILAs 30S ribosomal protein S9 YP_001512086.1 579160 D 350688 CDS YP_001512087.1 158319580 5677799 579634..579906 1 NC_009922.1 hypothetical protein 579906 5677799 Clos_0529 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512087.1 579634 D 350688 CDS YP_001512088.1 158319581 5677828 580304..581020 1 NC_009922.1 TIGRFAM: N-acetylmuramoyl-L-alanine amidase CwlD; PFAM: cell wall hydrolase/autolysin; KEGG: cdf:CD0106 germination-specific N-acetylmuramoyl-L-alanine amidase; N-acetylmuramoyl-L-alanine amidase CwlD 581020 5677828 Clos_0530 Alkaliphilus oremlandii OhILAs N-acetylmuramoyl-L-alanine amidase CwlD YP_001512088.1 580304 D 350688 CDS YP_001512089.1 158319582 5677829 complement(580998..581378) 1 NC_009922.1 KEGG: cbo:CBO1315 membrane protein; membrane protein 581378 5677829 Clos_0531 Alkaliphilus oremlandii OhILAs membrane protein YP_001512089.1 580998 R 350688 CDS YP_001512090.1 158319583 5677830 581625..582458 1 NC_009922.1 KEGG: pth:PTH_0587 ATPase involved in chromosome partitioning; chromosome partitioning ATPase 582458 5677830 Clos_0532 Alkaliphilus oremlandii OhILAs chromosome partitioning ATPase YP_001512090.1 581625 D 350688 CDS YP_001512091.1 158319584 5677831 582873..584330 1 NC_009922.1 KEGG: csc:Csac_1713 inosine-5'-monophosphate dehydrogenase; TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase 584330 5677831 Clos_0533 Alkaliphilus oremlandii OhILAs inosine-5'-monophosphate dehydrogenase YP_001512091.1 582873 D 350688 CDS YP_001512092.1 158319585 5677832 584346..585305 1 NC_009922.1 TIGRFAM: GMP synthase, large subunit; PFAM: GMP synthase domain protein; KEGG: ctc:CTC02409 bifunctional GMP synthase/glutamine amidotransferase protein; GMP synthase 585305 5677832 Clos_0534 Alkaliphilus oremlandii OhILAs GMP synthase YP_001512092.1 584346 D 350688 CDS YP_001512093.1 158319586 5677833 585739..587091 1 NC_009922.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: cbo:CBO2901 purine transporter; xanthine/uracil/vitamin C permease 587091 5677833 Clos_0535 Alkaliphilus oremlandii OhILAs xanthine/uracil/vitamin C permease YP_001512093.1 585739 D 350688 CDS YP_001512094.1 158319587 5677834 587166..588341 1 NC_009922.1 KEGG: tma:TM0447 phosphoribosylaminoimidazole carboxylase ATPase subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylaminoimidazole carboxylase ATPase subunit 588341 5677834 Clos_0536 Alkaliphilus oremlandii OhILAs phosphoribosylaminoimidazole carboxylase ATPase subunit YP_001512094.1 587166 D 350688 CDS YP_001512095.1 158319588 5677835 588354..588860 1 NC_009922.1 KEGG: pfu:PF0427 phosphoribosylaminoimidazole carboxylase catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 588860 5677835 Clos_0537 Alkaliphilus oremlandii OhILAs phosphoribosylaminoimidazole carboxylase catalytic subunit YP_001512095.1 588354 D 350688 CDS YP_001512096.1 158319589 5677836 588903..590309 1 NC_009922.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: cth:Cthe_1249 amidophosphoribosyltransferase; amidophosphoribosyltransferase 590309 5677836 Clos_0538 Alkaliphilus oremlandii OhILAs amidophosphoribosyltransferase YP_001512096.1 588903 D 350688 CDS YP_001512097.1 158319590 5678036 590342..591367 1 NC_009922.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 591367 5678036 Clos_0539 Alkaliphilus oremlandii OhILAs phosphoribosylaminoimidazole synthetase YP_001512097.1 590342 D 350688 CDS YP_001512098.1 158319591 5678037 591364..591993 1 NC_009922.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: cpr:CPR_0674 phosphoribosylglycinamide formyltransferase; phosphoribosylglycinamide formyltransferase 591993 5678037 Clos_0540 Alkaliphilus oremlandii OhILAs phosphoribosylglycinamide formyltransferase YP_001512098.1 591364 D 350688 CDS YP_001512099.1 158319592 5678038 592043..593581 1 NC_009922.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 593581 purH 5678038 purH Alkaliphilus oremlandii OhILAs bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_001512099.1 592043 D 350688 CDS YP_001512100.1 158319593 5678039 593594..594844 1 NC_009922.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 594844 5678039 Clos_0542 Alkaliphilus oremlandii OhILAs phosphoribosylamine--glycine ligase YP_001512100.1 593594 D 350688 CDS YP_001512101.1 158319594 5678040 595385..596176 1 NC_009922.1 PFAM: chemotaxis sensory transducer; KEGG: tte:TTE0646 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 596176 5678040 Clos_0543 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer YP_001512101.1 595385 D 350688 CDS YP_001512102.1 158319595 5678041 complement(596335..597186) 1 NC_009922.1 PFAM: NLPA lipoprotein; KEGG: dsy:DSY3920 hypothetical protein; NLPA lipoprotein 597186 5678041 Clos_0544 Alkaliphilus oremlandii OhILAs NLPA lipoprotein YP_001512102.1 596335 R 350688 CDS YP_001512103.1 158319596 5678042 complement(597614..598846) 1 NC_009922.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase I 598846 5678042 Clos_0545 Alkaliphilus oremlandii OhILAs aspartate kinase I YP_001512103.1 597614 R 350688 CDS YP_001512104.1 158319597 5678043 599829..601046 1 NC_009922.1 PFAM: sodium:dicarboxylate symporter; KEGG: ctc:CTC00822 proton/sodium-glutamate symport protein; sodium:dicarboxylate symporter 601046 5678043 Clos_0546 Alkaliphilus oremlandii OhILAs sodium:dicarboxylate symporter YP_001512104.1 599829 D 350688 CDS YP_001512105.1 158319598 5678044 601148..601852 1 NC_009922.1 TIGRFAM: aspartate racemase; PFAM: Asp/Glu racemase; KEGG: pho:PH0670 aspartate racemase; aspartate racemase 601852 5678044 Clos_0547 Alkaliphilus oremlandii OhILAs aspartate racemase YP_001512105.1 601148 D 350688 CDS YP_001512106.1 158319599 5678254 602213..602395 1 NC_009922.1 PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: mta:Moth_1278 twin-arginine translocation protein, TatA/E family; sec-independent translocation protein mttA/Hcf106 602395 5678254 Clos_0548 Alkaliphilus oremlandii OhILAs sec-independent translocation protein mttA/Hcf106 YP_001512106.1 602213 D 350688 CDS YP_001512107.1 158319600 5678255 602569..604788 1 NC_009922.1 TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: tte:TTE0604 Superfamily I DNA and RNA helicases; ATP-dependent DNA helicase PcrA 604788 5678255 Clos_0549 Alkaliphilus oremlandii OhILAs ATP-dependent DNA helicase PcrA YP_001512107.1 602569 D 350688 CDS YP_001512108.1 158319601 5678256 604862..606847 1 NC_009922.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 606847 ligA 5678256 ligA Alkaliphilus oremlandii OhILAs NAD-dependent DNA ligase LigA YP_001512108.1 604862 D 350688 CDS YP_001512109.1 158319602 5678257 607153..607902 1 NC_009922.1 TIGRFAM: integral membrane protein TIGR01906; PFAM: Integral membrane protein 1906; KEGG: tte:TTE1993 hypothetical protein; hypothetical protein 607902 5678257 Clos_0551 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512109.1 607153 D 350688 CDS YP_001512110.1 158319603 5678258 607983..609368 1 NC_009922.1 KEGG: cdf:CD2720 hypothetical protein; hypothetical protein 609368 5678258 Clos_0552 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512110.1 607983 D 350688 CDS YP_001512111.1 158319604 5678259 609794..610786 1 NC_009922.1 PFAM: AIR synthase related protein domain protein; KEGG: cth:Cthe_1060 AIR synthase related protein-like protein; AIR synthase-like protein 610786 5678259 Clos_0553 Alkaliphilus oremlandii OhILAs AIR synthase-like protein YP_001512111.1 609794 D 350688 CDS YP_001512112.1 158319605 5678260 611015..613159 1 NC_009922.1 PFAM: cell wall hydrolase/autolysin; copper amine oxidase domain protein; KEGG: cth:Cthe_0185 cell wall hydrolase/autolysin; cell wall hydrolase/autolysin 613159 5678260 Clos_0554 Alkaliphilus oremlandii OhILAs cell wall hydrolase/autolysin YP_001512112.1 611015 D 350688 CDS YP_001512113.1 158319606 5678261 613349..613867 1 NC_009922.1 KEGG: drm:Dred_2514 hypothetical protein; hypothetical protein 613867 5678261 Clos_0555 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512113.1 613349 D 350688 CDS YP_001512114.1 158319607 5678262 613965..614942 1 NC_009922.1 KEGG: cth:Cthe_0187 hypothetical protein; hypothetical protein 614942 5678262 Clos_0556 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512114.1 613965 D 350688 CDS YP_001512115.1 158319608 5677988 615348..616091 1 NC_009922.1 KEGG: cdf:CD3308 ribonuclease Ph; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; ribonuclease PH 616091 5677988 Clos_0557 Alkaliphilus oremlandii OhILAs ribonuclease PH YP_001512115.1 615348 D 350688 CDS YP_001512116.1 158319609 5677989 616106..616738 1 NC_009922.1 TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: cdf:CD3308 ribonuclease Ph; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 616738 5677989 Clos_0558 Alkaliphilus oremlandii OhILAs RdgB/HAM1 family non-canonical purine NTP pyrophosphatase YP_001512116.1 616106 D 350688 CDS YP_001512117.1 158319610 5677990 616739..617203 1 NC_009922.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: cdf:CD3307 putative phosphoesterase; phosphodiesterase 617203 5677990 Clos_0559 Alkaliphilus oremlandii OhILAs phosphodiesterase YP_001512117.1 616739 D 350688 CDS YP_001512118.1 158319611 5676122 618303..618548 1 NC_009922.1 PFAM: Transglycosylase-associated protein; KEGG: mxa:MXAN_4946 hypothetical protein; transglycosylase-associated protein 618548 5676122 Clos_0560 Alkaliphilus oremlandii OhILAs transglycosylase-associated protein YP_001512118.1 618303 D 350688 CDS YP_001512119.1 158319612 5676123 618718..619290 1 NC_009922.1 hypothetical protein 619290 5676123 Clos_0561 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512119.1 618718 D 350688 CDS YP_001512120.1 158319613 5676124 619326..619928 1 NC_009922.1 PFAM: protein of unknown function DUF159; KEGG: csc:Csac_0196 protein of unknown function DUF159; hypothetical protein 619928 5676124 Clos_0562 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512120.1 619326 D 350688 CDS YP_001512121.1 158319614 5676125 complement(619979..620626) 1 NC_009922.1 PFAM: cyclase family protein; KEGG: cch:Cag_1936 hypothetical protein; cyclase family protein 620626 5676125 Clos_0563 Alkaliphilus oremlandii OhILAs cyclase family protein YP_001512121.1 619979 R 350688 CDS YP_001512122.1 158319615 5676126 620944..621969 1 NC_009922.1 PFAM: band 7 protein; KEGG: cdf:CD3228 hypothetical protein; hypothetical protein 621969 5676126 Clos_0564 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512122.1 620944 D 350688 CDS YP_001512123.1 158319616 5676127 621988..622158 1 NC_009922.1 KEGG: spr:spr1942 hypothetical protein; hypothetical protein 622158 5676127 Clos_0565 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512123.1 621988 D 350688 CDS YP_001512124.1 158319617 5676128 622227..622469 1 NC_009922.1 hypothetical protein 622469 5676128 Clos_0566 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512124.1 622227 D 350688 CDS YP_001512125.1 158319618 5676129 622771..624216 1 NC_009922.1 KEGG: fnu:FN1277 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein; aminoacyl-histidine dipeptidase 624216 5676129 Clos_0567 Alkaliphilus oremlandii OhILAs aminoacyl-histidine dipeptidase YP_001512125.1 622771 D 350688 CDS YP_001512126.1 158319619 5677354 624297..625175 1 NC_009922.1 PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; KEGG: gsu:GSU0294 HD domain protein; metal dependent phosphohydrolase 625175 5677354 Clos_0568 Alkaliphilus oremlandii OhILAs metal dependent phosphohydrolase YP_001512126.1 624297 D 350688 CDS YP_001512127.1 158319620 5677355 625221..626006 1 NC_009922.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 626006 5677355 Clos_0569 Alkaliphilus oremlandii OhILAs formate dehydrogenase accessory protein YP_001512127.1 625221 D 350688 CDS YP_001512128.1 158319621 5677356 626111..627073 1 NC_009922.1 KEGG: dsy:DSY3488 hypothetical protein; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 627073 5677356 Clos_0570 Alkaliphilus oremlandii OhILAs molybdenum cofactor biosynthesis protein A YP_001512128.1 626111 D 350688 CDS YP_001512129.1 158319622 5677357 627076..627486 1 NC_009922.1 KEGG: cdf:CD1715 putative molybdenum cofactor sulfurase; hypothetical protein 627486 5677357 Clos_0571 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512129.1 627076 D 350688 CDS YP_001512130.1 158319623 5677358 627826..629184 1 NC_009922.1 PFAM: extracellular solute-binding protein family 1; KEGG: tte:TTE1917 sugar-binding periplasmic proteins/domains; extracellular solute-binding protein 629184 5677358 Clos_0572 Alkaliphilus oremlandii OhILAs extracellular solute-binding protein YP_001512130.1 627826 D 350688 CDS YP_001512131.1 158319624 5677359 629214..630182 1 NC_009922.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 630182 murB 5677359 murB Alkaliphilus oremlandii OhILAs UDP-N-acetylenolpyruvoylglucosamine reductase YP_001512131.1 629214 D 350688 CDS YP_001512132.1 158319625 5677360 630219..631091 1 NC_009922.1 PFAM: conserved hypothetical protein; KEGG: cbo:CBO3377 ATPase; hypothetical protein 631091 5677360 Clos_0574 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512132.1 630219 D 350688 CDS YP_001512133.1 158319626 5677361 631096..632427 1 NC_009922.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: ctc:CTC02494 transporter; hypothetical protein 632427 5677361 Clos_0575 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512133.1 631096 D 350688 CDS YP_001512134.1 158319627 5677362 complement(632466..633731) 1 NC_009922.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: sth:STH226 uracil permease; uracil-xanthine permease 633731 5677362 Clos_0576 Alkaliphilus oremlandii OhILAs uracil-xanthine permease YP_001512134.1 632466 R 350688 CDS YP_001512135.1 158319628 5676422 634170..634592 1 NC_009922.1 PFAM: NUDIX hydrolase; KEGG: cdf:CD3398 putative DNA repair protein (nucleotide pyrophosphatase); NUDIX hydrolase 634592 5676422 Clos_0577 Alkaliphilus oremlandii OhILAs NUDIX hydrolase YP_001512135.1 634170 D 350688 CDS YP_001512136.1 158319629 5676423 634634..635596 1 NC_009922.1 PFAM: protein of unknown function DUF199; KEGG: tte:TTE1821 hypothetical protein; hypothetical protein 635596 5676423 Clos_0578 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512136.1 634634 D 350688 CDS YP_001512137.1 158319630 5676424 635757..637787 1 NC_009922.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 637787 5676424 Clos_0579 Alkaliphilus oremlandii OhILAs urocanate hydratase YP_001512137.1 635757 D 350688 CDS YP_001512138.1 158319631 5676425 637883..638788 1 NC_009922.1 KEGG: bth:BT_2693 formiminotransferase-cyclodeaminase; TIGRFAM: glutamate formiminotransferase; PFAM: Formiminotransferase domain protein; Formiminotransferase domain protein; glutamate formiminotransferase 638788 5676425 Clos_0580 Alkaliphilus oremlandii OhILAs glutamate formiminotransferase YP_001512138.1 637883 D 350688 CDS YP_001512139.1 158319632 5676426 complement(638871..640970) 1 NC_009922.1 KEGG: ctc:CTC00329 aminopeptidase Y; hypothetical protein 640970 5676426 Clos_0581 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512139.1 638871 R 350688 CDS YP_001512140.1 158319633 5676427 641717..643033 1 NC_009922.1 KEGG: cth:Cthe_0942 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme YliG; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme YliG 643033 5676427 Clos_0582 Alkaliphilus oremlandii OhILAs MiaB-like tRNA modifying enzyme YliG YP_001512140.1 641717 D 350688 CDS YP_001512141.1 158319634 5676428 643420..646914 1 NC_009922.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE 646914 dnaE 5676428 dnaE Alkaliphilus oremlandii OhILAs DNA polymerase III DnaE YP_001512141.1 643420 D 350688 CDS YP_001512142.1 158319635 5676429 647028..647219 1 NC_009922.1 KEGG: cth:Cthe_1262 hypothetical protein; hypothetical protein 647219 5676429 Clos_0584 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512142.1 647028 D 350688 CDS YP_001512143.1 158319636 5676430 647384..648343 1 NC_009922.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 648343 5676430 Clos_0585 Alkaliphilus oremlandii OhILAs 6-phosphofructokinase YP_001512143.1 647384 D 350688 CDS YP_001512144.1 158319637 5676717 648367..650121 1 NC_009922.1 TIGRFAM: pyruvate kinase; PFAM: PEP-utilising protein mobile region; Pyruvate kinase barrel; Pyruvate kinase alpha/beta; KEGG: tte:TTE1815 pyruvate kinase; pyruvate kinase 650121 5676717 Clos_0586 Alkaliphilus oremlandii OhILAs pyruvate kinase YP_001512144.1 648367 D 350688 CDS YP_001512145.1 158319638 5676718 650384..651124 1 NC_009922.1 PFAM: regulatory protein TetR; KEGG: mac:MA0368 transcriptional regulator, TetR family; TetR family transcriptional regulator 651124 5676718 Clos_0587 Alkaliphilus oremlandii OhILAs TetR family transcriptional regulator YP_001512145.1 650384 D 350688 CDS YP_001512146.1 158319639 5676719 651169..652965 1 NC_009922.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC00811 fumarate reductase flavoprotein subunit precursor; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 652965 5676719 Clos_0588 Alkaliphilus oremlandii OhILAs fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_001512146.1 651169 D 350688 CDS YP_001512147.1 158319640 5676720 complement(653367..654713) 1 NC_009922.1 hypothetical protein 654713 5676720 Clos_0589 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512147.1 653367 R 350688 CDS YP_001512148.1 158319641 5676721 654960..656318 1 NC_009922.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; protein of unknown function Met10; (Uracil-5)-methyltransferase; KEGG: cdf:CD3393 putative RNA methyltransferase; RNA methyltransferase 656318 5676721 Clos_0590 Alkaliphilus oremlandii OhILAs RNA methyltransferase YP_001512148.1 654960 D 350688 CDS YP_001512149.1 158319642 5676722 656519..656803 1 NC_009922.1 hypothetical protein 656803 5676722 Clos_0591 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512149.1 656519 D 350688 CDS YP_001512150.1 158319643 5676723 656949..657875 1 NC_009922.1 PFAM: helix-turn-helix- domain containing protein AraC type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: cbo:CBO3059 GTP pyrophosphokinase; AraC family transcriptional regulator 657875 5676723 Clos_0592 Alkaliphilus oremlandii OhILAs AraC family transcriptional regulator YP_001512150.1 656949 D 350688 CDS YP_001512151.1 158319644 5676724 658143..658385 1 NC_009922.1 hypothetical protein 658385 5676724 Clos_0593 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512151.1 658143 D 350688 CDS YP_001512152.1 158319645 5676725 658428..658718 1 NC_009922.1 PFAM: transposase IS3/IS911 family protein; KEGG: bha:BH3445 transposase (05); transposase IS3/IS911 family protein 658718 5676725 Clos_0594 Alkaliphilus oremlandii OhILAs transposase IS3/IS911 family protein YP_001512152.1 658428 D 350688 CDS YP_001512153.1 158319646 5677421 658721..659554 1 NC_009922.1 PFAM: Integrase catalytic region; KEGG: bcz:pE33L466_0288 transposase; integrase catalytic region 659554 5677421 Clos_0595 Alkaliphilus oremlandii OhILAs integrase catalytic region YP_001512153.1 658721 D 350688 CDS YP_001512154.1 158319647 5677424 660225..660815 1 NC_009922.1 PFAM: regulatory protein TetR; KEGG: drm:Dred_3014 transcriptional regulator, TetR family; TetR family transcriptional regulator 660815 5677424 Clos_0598 Alkaliphilus oremlandii OhILAs TetR family transcriptional regulator YP_001512154.1 660225 D 350688 CDS YP_001512155.1 158319648 5677425 660868..661842 1 NC_009922.1 PFAM: Rieske [2Fe-2S] domain protein; KEGG: tma:TM1284 oxidase-related protein; Rieske (2Fe-2S) domain-containing protein 661842 5677425 Clos_0599 Alkaliphilus oremlandii OhILAs Rieske (2Fe-2S) domain-containing protein YP_001512155.1 660868 D 350688 CDS YP_001512156.1 158319649 5677426 662135..663073 1 NC_009922.1 hypothetical protein 663073 5677426 Clos_0600 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512156.1 662135 D 350688 CDS YP_001512157.1 158319650 5677427 663331..663918 1 NC_009922.1 KEGG: gtn:GTNG_1582 ATP-binding membrane protein; ATP-binding membrane protein 663918 5677427 Clos_0601 Alkaliphilus oremlandii OhILAs ATP-binding membrane protein YP_001512157.1 663331 D 350688 CDS YP_001512158.1 158319651 5677428 complement(664410..665348) 1 NC_009922.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein MerR; Prophage CP4-57 regulatory; KEGG: cac:CAC0252 molybdate-binding protein; DNA binding domain-containing protein 665348 5677428 Clos_0602 Alkaliphilus oremlandii OhILAs DNA binding domain-containing protein YP_001512158.1 664410 R 350688 CDS YP_001512159.1 158319652 5677429 665513..666577 1 NC_009922.1 KEGG: fnu:FN0532 hypothetical membrane-spanning protein; hypothetical protein 666577 5677429 Clos_0603 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512159.1 665513 D 350688 CDS YP_001512160.1 158319653 5676513 666756..667769 1 NC_009922.1 KEGG: ftw:FTW_0523 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 667769 5676513 Clos_0604 Alkaliphilus oremlandii OhILAs glyceraldehyde-3-phosphate dehydrogenase, type I YP_001512160.1 666756 D 350688 CDS YP_001512161.1 158319654 5676514 668164..668604 1 NC_009922.1 KEGG: cpr:CPR_2264 prepilin peptidase-dependent; hypothetical protein 668604 5676514 Clos_0605 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512161.1 668164 D 350688 CDS YP_001512162.1 158319655 5676515 668594..669001 1 NC_009922.1 hypothetical protein 669001 5676515 Clos_0606 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512162.1 668594 D 350688 CDS YP_001512163.1 158319656 5676516 669015..670412 1 NC_009922.1 hypothetical protein 670412 5676516 Clos_0607 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512163.1 669015 D 350688 CDS YP_001512164.1 158319657 5676517 complement(671110..674139) 1 NC_009922.1 KEGG: dsy:DSY1126 hypothetical protein; hypothetical protein 674139 5676517 Clos_0608 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512164.1 671110 R 350688 CDS YP_001512165.1 158319658 5676518 complement(674251..674631) 1 NC_009922.1 KEGG: gka:GK1783 hypothetical protein; hypothetical protein 674631 5676518 Clos_0609 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512165.1 674251 R 350688 CDS YP_001512166.1 158319659 5676519 674821..676332 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: lwe:lwe2628 sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 676332 5676519 Clos_0610 Alkaliphilus oremlandii OhILAs integral membrane sensor signal transduction histidine kinase YP_001512166.1 674821 D 350688 CDS YP_001512167.1 158319660 5676520 676345..677046 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: lwe:lwe2627 DNA-binding response regulator; two component transcriptional regulator 677046 5676520 Clos_0611 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001512167.1 676345 D 350688 CDS YP_001512168.1 158319661 5676521 677230..679368 1 NC_009922.1 KEGG: gka:GK2054 hypothetical protein; hypothetical protein 679368 5676521 Clos_0612 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512168.1 677230 D 350688 CDS YP_001512169.1 158319662 5676203 679430..680521 1 NC_009922.1 PFAM: HEAT domain containing protein; PBS lyase HEAT domain protein repeat-containing protein; KEGG: mba:Mbar_A1826 hypothetical protein; HEAT repeat-containing PBS lyase 680521 5676203 Clos_0613 Alkaliphilus oremlandii OhILAs HEAT repeat-containing PBS lyase YP_001512169.1 679430 D 350688 CDS YP_001512170.1 158319663 5676204 680575..682023 1 NC_009922.1 PFAM: glycosyl transferase family 2; chitin synthase; KEGG: sat:SYN_00856 glycosyltransferase; glycosyl transferase family protein 682023 5676204 Clos_0614 Alkaliphilus oremlandii OhILAs glycosyl transferase family protein YP_001512170.1 680575 D 350688 CDS YP_001512171.1 158319664 5676205 682045..682980 1 NC_009922.1 KEGG: dsy:DSY3658 hypothetical protein; hypothetical protein 682980 5676205 Clos_0615 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512171.1 682045 D 350688 CDS YP_001512172.1 158319665 5676206 683010..684080 1 NC_009922.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; 5TM Receptors of the LytS-YhcK type transmembrane region; KEGG: cac:CAC3544 membrane associated GGDEF domain containing protein; diguanylate cyclase 684080 5676206 Clos_0616 Alkaliphilus oremlandii OhILAs diguanylate cyclase YP_001512172.1 683010 D 350688 CDS YP_001512173.1 158319666 5676207 complement(684285..684779) 1 NC_009922.1 PFAM: Rubrerythrin; KEGG: dsy:DSY1206 hypothetical protein; rubrerythrin 684779 5676207 Clos_0617 Alkaliphilus oremlandii OhILAs rubrerythrin YP_001512173.1 684285 R 350688 CDS YP_001512174.1 158319667 5676208 complement(684836..685258) 1 NC_009922.1 PFAM: ferric-uptake regulator; KEGG: fnu:FN2045 ferric uptake regulation protein; ferric uptake regulator family protein 685258 5676208 Clos_0618 Alkaliphilus oremlandii OhILAs ferric uptake regulator family protein YP_001512174.1 684836 R 350688 CDS YP_001512175.1 158319668 5676209 685465..685992 1 NC_009922.1 KEGG: ctc:CTC01154 hypothetical protein; hypothetical protein 685992 5676209 Clos_0619 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512175.1 685465 D 350688 CDS YP_001512176.1 158319669 5676210 686123..686458 1 NC_009922.1 TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; KEGG: cbo:CBO0622 chaperonin involved in protein secretion; export-related chaperone CsaA 686458 5676210 Clos_0620 Alkaliphilus oremlandii OhILAs export-related chaperone CsaA YP_001512176.1 686123 D 350688 CDS YP_001512177.1 158319670 5676211 686493..687587 1 NC_009922.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dsy:DSY0623 hypothetical protein; iron-containing alcohol dehydrogenase 687587 5676211 Clos_0621 Alkaliphilus oremlandii OhILAs iron-containing alcohol dehydrogenase YP_001512177.1 686493 D 350688 CDS YP_001512178.1 158319671 5677971 688124..689299 1 NC_009922.1 TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain protein; KEGG: cdf:CD2344 hypothetical protein; YidE/YbjL duplication 689299 5677971 Clos_0622 Alkaliphilus oremlandii OhILAs YidE/YbjL duplication YP_001512178.1 688124 D 350688 CDS YP_001512179.1 158319672 5677972 689318..690478 1 NC_009922.1 KEGG: gka:GK1208 succinyl-CoA synthetase beta subunit (succinate-CoA ligase beta subunit); TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; succinyl-CoA synthetase, beta subunit 690478 5677972 Clos_0623 Alkaliphilus oremlandii OhILAs succinyl-CoA synthetase, beta subunit YP_001512179.1 689318 D 350688 CDS YP_001512180.1 158319673 5677973 690501..691403 1 NC_009922.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 691403 5677973 Clos_0624 Alkaliphilus oremlandii OhILAs succinyl-CoA synthetase subunit alpha YP_001512180.1 690501 D 350688 CDS YP_001512181.1 158319674 5677974 691543..693654 1 NC_009922.1 KEGG: tte:TTE1081 diguanylate cyclase/phosphodiesterase domain 2 (EAL); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 693654 5677974 Clos_0625 Alkaliphilus oremlandii OhILAs PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase YP_001512181.1 691543 D 350688 CDS YP_001512182.1 158319675 5677975 complement(693716..695092) 1 NC_009922.1 PFAM: aldehyde dehydrogenase; KEGG: bld:BLi04011 similar to aldehyde dehydrogenase; RBL02843; aldehyde dehydrogenase 695092 5677975 Clos_0626 Alkaliphilus oremlandii OhILAs aldehyde dehydrogenase YP_001512182.1 693716 R 350688 CDS YP_001512183.1 158319676 5677976 695273..696469 1 NC_009922.1 PFAM: Patatin; KEGG: cdf:CD2757 putative phospholipase; patatin 696469 5677976 Clos_0627 Alkaliphilus oremlandii OhILAs patatin YP_001512183.1 695273 D 350688 CDS YP_001512184.1 158319677 5677977 696836..698017 1 NC_009922.1 KEGG: fnu:FN1899 hypothetical lipoprotein; lipoprotein 698017 5677977 Clos_0628 Alkaliphilus oremlandii OhILAs lipoprotein YP_001512184.1 696836 D 350688 CDS YP_001512185.1 158319678 5677978 698119..699720 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fnu:FN1898 sugar transport ATP-binding protein; ABC transporter 699720 5677978 Clos_0629 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512185.1 698119 D 350688 CDS YP_001512186.1 158319679 5676975 699713..700774 1 NC_009922.1 PFAM: inner-membrane translocator; KEGG: fnu:FN1897 ABC transporter integral membrane protein; inner-membrane translocator 700774 5676975 Clos_0630 Alkaliphilus oremlandii OhILAs inner-membrane translocator YP_001512186.1 699713 D 350688 CDS YP_001512187.1 158319680 5676976 700774..702264 1 NC_009922.1 PFAM: inner-membrane translocator; KEGG: fnu:FN1896 ABC transporter integral membrane protein; inner-membrane translocator 702264 5676976 Clos_0631 Alkaliphilus oremlandii OhILAs inner-membrane translocator YP_001512187.1 700774 D 350688 CDS YP_001512188.1 158319681 5676977 702468..702821 1 NC_009922.1 PFAM: arsenate reductase and related; KEGG: cth:Cthe_1508 hypothetical protein; arsenate reductase-like protein 702821 5676977 Clos_0632 Alkaliphilus oremlandii OhILAs arsenate reductase-like protein YP_001512188.1 702468 D 350688 CDS YP_001512189.1 158319682 5676978 complement(702867..703361) 1 NC_009922.1 TIGRFAM: C_GCAxxG_C_C family protein; KEGG: cbo:CBO1521 hypothetical protein; C_GCAxxG_C_C family protein 703361 5676978 Clos_0633 Alkaliphilus oremlandii OhILAs C_GCAxxG_C_C family protein YP_001512189.1 702867 R 350688 CDS YP_001512190.1 158319683 5676979 complement(703565..703984) 1 NC_009922.1 PFAM: OsmC family protein; KEGG: sth:STH27 putative redox protein; OsmC family protein 703984 5676979 Clos_0634 Alkaliphilus oremlandii OhILAs OsmC family protein YP_001512190.1 703565 R 350688 CDS YP_001512191.1 158319684 5676980 704392..705738 1 NC_009922.1 PFAM: short chain fatty acid transporter; KEGG: fnu:FN1858 short-chain fatty acids transporter; short chain fatty acid transporter 705738 5676980 Clos_0635 Alkaliphilus oremlandii OhILAs short chain fatty acid transporter YP_001512191.1 704392 D 350688 CDS YP_001512192.1 158319685 5676981 706063..707202 1 NC_009922.1 PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: cdf:CD1054 butyryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 707202 5676981 Clos_0636 Alkaliphilus oremlandii OhILAs acyl-CoA dehydrogenase domain-containing protein YP_001512192.1 706063 D 350688 CDS YP_001512193.1 158319686 5676982 707217..708002 1 NC_009922.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: cdf:CD1055 electron transfer flavoprotein beta-subunit; electron transfer flavoprotein alpha/beta-subunit 708002 5676982 Clos_0637 Alkaliphilus oremlandii OhILAs electron transfer flavoprotein alpha/beta-subunit YP_001512193.1 707217 D 350688 CDS YP_001512194.1 158319687 5676983 708026..709030 1 NC_009922.1 PFAM: Electron transfer flavoprotein alpha/beta-subunit ; Electron transfer flavoprotein alpha subunit; KEGG: ctc:CTC00712 electron transfer flavoprotein alpha-subunit fixB; electron transfer flavoprotein alpha/beta-subunit 709030 5676983 Clos_0638 Alkaliphilus oremlandii OhILAs electron transfer flavoprotein alpha/beta-subunit YP_001512194.1 708026 D 350688 CDS YP_001512195.1 158319688 5676441 complement(709264..710337) 1 NC_009922.1 PFAM: glycosyl transferase family 2; KEGG: cdf:CD3350 putative glycosyl transferase; glycosyl transferase family protein 710337 5676441 Clos_0639 Alkaliphilus oremlandii OhILAs glycosyl transferase family protein YP_001512195.1 709264 R 350688 CDS YP_001512196.1 158319689 5676442 710586..711923 1 NC_009922.1 PFAM: Radical SAM domain protein; KEGG: drm:Dred_1282 radical SAM domain protein; radical SAM domain-containing protein 711923 5676442 Clos_0640 Alkaliphilus oremlandii OhILAs radical SAM domain-containing protein YP_001512196.1 710586 D 350688 CDS YP_001512197.1 158319690 5676443 711972..712706 1 NC_009922.1 KEGG: drm:Dred_1283 hypothetical protein; hypothetical protein 712706 5676443 Clos_0641 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512197.1 711972 D 350688 CDS YP_001512198.1 158319691 5676444 712946..713623 1 NC_009922.1 TIGRFAM: uracil-DNA glycosylase; PFAM: Uracil-DNA glycosylase superfamily; KEGG: cpr:CPR_0249 uracil-DNA glycosylase; uracil-DNA glycosylase 713623 5676444 Clos_0642 Alkaliphilus oremlandii OhILAs uracil-DNA glycosylase YP_001512198.1 712946 D 350688 CDS YP_001512199.1 158319692 5676445 complement(713730..714893) 1 NC_009922.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: cth:Cthe_1410 cation diffusion facilitator family transporter; cation diffusion facilitator family transporter 714893 5676445 Clos_0643 Alkaliphilus oremlandii OhILAs cation diffusion facilitator family transporter YP_001512199.1 713730 R 350688 CDS YP_001512200.1 158319693 5676446 complement(714974..715609) 1 NC_009922.1 PFAM: nitroreductase; KEGG: cdf:CD2572 putative nitroreductase; nitroreductase 715609 5676446 Clos_0644 Alkaliphilus oremlandii OhILAs nitroreductase YP_001512200.1 714974 R 350688 CDS YP_001512201.1 158319694 5676447 715772..716140 1 NC_009922.1 PFAM: regulatory protein GntR HTH; KEGG: cbo:CBO1205 GntR-family transcriptional regulator; GntR family transcriptional regulator 716140 5676447 Clos_0645 Alkaliphilus oremlandii OhILAs GntR family transcriptional regulator YP_001512201.1 715772 D 350688 CDS YP_001512202.1 158319695 5676448 716824..717132 1 NC_009922.1 KEGG: cth:Cthe_3235 hypothetical protein; hypothetical protein 717132 5676448 Clos_0646 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512202.1 716824 D 350688 CDS YP_001512203.1 158319696 5676449 717129..717971 1 NC_009922.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: csc:Csac_0467 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 717971 5676449 Clos_0647 Alkaliphilus oremlandii OhILAs ECF subfamily RNA polymerase sigma-24 factor YP_001512203.1 717129 D 350688 CDS YP_001512204.1 158319697 5676095 718004..718546 1 NC_009922.1 KEGG: dsy:DSY0732 hypothetical protein; hypothetical protein 718546 5676095 Clos_0648 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512204.1 718004 D 350688 CDS YP_001512205.1 158319698 5676096 719143..719535 1 NC_009922.1 PFAM: regulatory protein GntR HTH; KEGG: cbo:CBO1323 GntR-family transcriptional regulator; GntR family transcriptional regulator 719535 5676096 Clos_0649 Alkaliphilus oremlandii OhILAs GntR family transcriptional regulator YP_001512205.1 719143 D 350688 CDS YP_001512206.1 158319699 5676097 719675..719920 1 NC_009922.1 hypothetical protein 719920 5676097 Clos_0650 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512206.1 719675 D 350688 CDS YP_001512207.1 158319700 5676098 720098..721192 1 NC_009922.1 PFAM: PfkB domain protein; Helix-turn-helix type 11 domain protein; KEGG: cbo:CBO1168 sugar kinase; ribokinase-like domain-containing protein 721192 5676098 Clos_0651 Alkaliphilus oremlandii OhILAs ribokinase-like domain-containing protein YP_001512207.1 720098 D 350688 CDS YP_001512208.1 158319701 5676099 721186..722103 1 NC_009922.1 PFAM: Indigoidine synthase A family protein; KEGG: cbo:CBO1169 hypothetical protein; indigoidine synthase A family protein 722103 5676099 Clos_0652 Alkaliphilus oremlandii OhILAs indigoidine synthase A family protein YP_001512208.1 721186 D 350688 CDS YP_001512209.1 158319702 5676100 722338..722652 1 NC_009922.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cac:CAC3083 thioredoxin; thioredoxin 722652 5676100 Clos_0653 Alkaliphilus oremlandii OhILAs thioredoxin YP_001512209.1 722338 D 350688 CDS YP_001512210.1 158319703 5676101 722695..723594 1 NC_009922.1 PFAM: glucose-inhibited division protein A; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cbo:CBO3433 thioredoxin reductase; thioredoxin-disulfide reductase 723594 5676101 Clos_0654 Alkaliphilus oremlandii OhILAs thioredoxin-disulfide reductase YP_001512210.1 722695 D 350688 CDS YP_001512211.1 158319704 5676102 723772..724584 1 NC_009922.1 PFAM: zinc/iron permease; KEGG: cch:Cag_0157 zinc transporter ZupT; zinc transporter ZupT 724584 5676102 Clos_0655 Alkaliphilus oremlandii OhILAs zinc transporter ZupT YP_001512211.1 723772 D 350688 CDS YP_001512212.1 158319705 5676103 724940..726424 1 NC_009922.1 PFAM: protein of unknown function DUF1538; KEGG: cbo:CBO2972 membrane protein; hypothetical protein 726424 5676103 Clos_0656 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512212.1 724940 D 350688 CDS YP_001512213.1 158319706 5676042 726421..727113 1 NC_009922.1 KEGG: dsy:DSY4194 hypothetical protein; hypothetical protein 727113 5676042 Clos_0657 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512213.1 726421 D 350688 CDS YP_001512214.1 158319707 5676043 727302..729119 1 NC_009922.1 TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: tte:TTE2705 oligoendopeptidase F; oligoendopeptidase F 729119 5676043 Clos_0658 Alkaliphilus oremlandii OhILAs oligoendopeptidase F YP_001512214.1 727302 D 350688 CDS YP_001512215.1 158319708 5676044 729170..730258 1 NC_009922.1 KEGG: sth:STH2334 hypothetical protein; hypothetical protein 730258 5676044 Clos_0659 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512215.1 729170 D 350688 CDS YP_001512216.1 158319709 5676045 730298..730972 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY4865 hypothetical protein; ABC transporter 730972 5676045 Clos_0660 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512216.1 730298 D 350688 CDS YP_001512217.1 158319710 5676046 730973..731857 1 NC_009922.1 PFAM: protein of unknown function DUF214; KEGG: tte:TTE1976 cell division protein; hypothetical protein 731857 5676046 Clos_0661 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512217.1 730973 D 350688 CDS YP_001512218.1 158319711 5676047 731884..732600 1 NC_009922.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: drm:Dred_0754 haloacid dehalogenase domain protein hydrolase; hydrolase 732600 5676047 Clos_0662 Alkaliphilus oremlandii OhILAs hydrolase YP_001512218.1 731884 D 350688 CDS YP_001512219.1 158319712 5676048 complement(732686..733918) 1 NC_009922.1 PFAM: peptidase M29 aminopeptidase II; KEGG: tde:TDE2337 aminopeptidase; peptidase M29 aminopeptidase II 733918 5676048 Clos_0663 Alkaliphilus oremlandii OhILAs peptidase M29 aminopeptidase II YP_001512219.1 732686 R 350688 CDS YP_001512220.1 158319713 5676049 734126..735409 1 NC_009922.1 catalyzes the formation of pyruvate from serine; D-serine dehydratase 735409 5676049 Clos_0664 Alkaliphilus oremlandii OhILAs D-serine dehydratase YP_001512220.1 734126 D 350688 CDS YP_001512221.1 158319714 5676050 735608..736372 1 NC_009922.1 PFAM: regulatory protein MerR; TipAS antibiotic-recognition domain protein; Transcription regulator MerR DNA binding; KEGG: dsy:DSY4240 hypothetical protein; MerR family transcriptional regulator 736372 5676050 Clos_0665 Alkaliphilus oremlandii OhILAs MerR family transcriptional regulator YP_001512221.1 735608 D 350688 CDS YP_001512222.1 158319715 5677545 736565..737242 1 NC_009922.1 KEGG: ctc:CTC02470 hypothetical protein; hypothetical protein 737242 5677545 Clos_0666 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512222.1 736565 D 350688 CDS YP_001512223.1 158319716 5677546 737575..738237 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cac:CAC3663 response regulator (CheY-like receiver domain and HTH-type DNA-binding domain); two component transcriptional regulator 738237 5677546 Clos_0667 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001512223.1 737575 D 350688 CDS YP_001512224.1 158319717 5677547 738242..739540 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cbo:CBO0296 two-component sensor kinase; integral membrane sensor signal transduction histidine kinase 739540 5677547 Clos_0668 Alkaliphilus oremlandii OhILAs integral membrane sensor signal transduction histidine kinase YP_001512224.1 738242 D 350688 CDS YP_001512225.1 158319718 5677548 739821..740246 1 NC_009922.1 KEGG: cth:Cthe_1547 hypothetical protein; hypothetical protein 740246 5677548 Clos_0669 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512225.1 739821 D 350688 CDS YP_001512226.1 158319719 5677549 740540..742192 1 NC_009922.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 742192 5677549 Clos_0670 Alkaliphilus oremlandii OhILAs hydroxylamine reductase YP_001512226.1 740540 D 350688 CDS YP_001512227.1 158319720 5677550 complement(742222..743466) 1 NC_009922.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cno:NT01CX_1509 integral membrane protein with CBS domains; hypothetical protein 743466 5677550 Clos_0671 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512227.1 742222 R 350688 CDS YP_001512228.1 158319721 5677551 complement(743629..745221) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0281 ABC transporter, ATP-binding protein; ABC transporter 745221 5677551 Clos_0672 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512228.1 743629 R 350688 CDS YP_001512229.1 158319722 5677552 745539..746930 1 NC_009922.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 746930 trkA 5677552 trkA Alkaliphilus oremlandii OhILAs potassium transporter peripheral membrane protein YP_001512229.1 745539 D 350688 CDS YP_001512230.1 158319723 5677553 746896..748344 1 NC_009922.1 PFAM: cation transporter; KEGG: ctc:CTC00235 potassium uptake protein trkH; cation transporter 748344 5677553 Clos_0674 Alkaliphilus oremlandii OhILAs cation transporter YP_001512230.1 746896 D 350688 CDS YP_001512231.1 158319724 5676573 748426..748941 1 NC_009922.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: gtn:GTNG_2690 thioredoxin peroxidase; redoxin domain-containing protein 748941 5676573 Clos_0675 Alkaliphilus oremlandii OhILAs redoxin domain-containing protein YP_001512231.1 748426 D 350688 CDS YP_001512232.1 158319725 5676574 749227..750219 1 NC_009922.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: drm:Dred_3213 TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein 750219 5676574 Clos_0676 Alkaliphilus oremlandii OhILAs TRAP transporter solute receptor TAXI family protein YP_001512232.1 749227 D 350688 CDS YP_001512233.1 158319726 5676575 750200..750766 1 NC_009922.1 PFAM: Domain of unknown function DUF1850; KEGG: oih:OB3065 hypothetical protein; hypothetical protein 750766 5676575 Clos_0677 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512233.1 750200 D 350688 CDS YP_001512234.1 158319727 5676576 750759..752762 1 NC_009922.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: drm:Dred_3211 TRAP transporter, 4TM/12TM fusion protein; TRAP transporter, 4TM/12TM fusion protein 752762 5676576 Clos_0678 Alkaliphilus oremlandii OhILAs TRAP transporter, 4TM/12TM fusion protein YP_001512234.1 750759 D 350688 CDS YP_001512235.1 158319728 5676577 752983..753660 1 NC_009922.1 PFAM: protein of unknown function DUF161; KEGG: cdf:CD1022 hypothetical protein; hypothetical protein 753660 5676577 Clos_0679 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512235.1 752983 D 350688 CDS YP_001512236.1 158319729 5676578 753684..754574 1 NC_009922.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: btl:BALH_2271 D-alanyl-D-alanine carboxypeptidase family protein; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 754574 5676578 Clos_0680 Alkaliphilus oremlandii OhILAs peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin YP_001512236.1 753684 D 350688 CDS YP_001512237.1 158319730 5676579 754660..754971 1 NC_009922.1 KEGG: cno:NT01CX_0447 probable membrane protein; hypothetical protein 754971 5676579 Clos_0681 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512237.1 754660 D 350688 CDS YP_001512238.1 158319731 5676580 755126..756142 1 NC_009922.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: ctc:CTC00913 transcriptional regulatory protein; AraC family transcriptional regulator 756142 5676580 Clos_0682 Alkaliphilus oremlandii OhILAs AraC family transcriptional regulator YP_001512238.1 755126 D 350688 CDS YP_001512239.1 158319732 5676070 756800..758551 1 NC_009922.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cbo:CBO1599 ABC transporter, ATP-binding/permease protein; ABC transporter 758551 5676070 Clos_0684 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512239.1 756800 D 350688 CDS YP_001512240.1 158319733 5676071 758553..760277 1 NC_009922.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cbo:CBO1600 ABC transporter, ATP-binding/permease protein; ABC transporter 760277 5676071 Clos_0685 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512240.1 758553 D 350688 CDS YP_001512241.1 158319734 5676072 complement(760336..761247) 1 NC_009922.1 KEGG: cbo:CBO1213 signaling protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 761247 5676072 Clos_0686 Alkaliphilus oremlandii OhILAs PAS/PAC sensor-containing diguanylate cyclase YP_001512241.1 760336 R 350688 CDS YP_001512242.1 158319735 5676073 complement(761298..761789) 1 NC_009922.1 PFAM: Rubrerythrin; KEGG: cbo:CBO0644 hypothetical protein; rubrerythrin 761789 5676073 Clos_0687 Alkaliphilus oremlandii OhILAs rubrerythrin YP_001512242.1 761298 R 350688 CDS YP_001512243.1 158319736 5676074 761968..763398 1 NC_009922.1 PFAM: protein of unknown function DUF187; KEGG: bat:BAS2289 hypothetical protein; hypothetical protein 763398 5676074 Clos_0688 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512243.1 761968 D 350688 CDS YP_001512244.1 158319737 5676075 763432..764295 1 NC_009922.1 KEGG: cth:Cthe_0277 hypothetical protein; hypothetical protein 764295 5676075 Clos_0689 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512244.1 763432 D 350688 CDS YP_001512245.1 158319738 5676076 764308..765000 1 NC_009922.1 PFAM: pseudouridine synthase; KEGG: dsy:DSY0510 hypothetical protein; pseudouridine synthase 765000 5676076 Clos_0690 Alkaliphilus oremlandii OhILAs pseudouridine synthase YP_001512245.1 764308 D 350688 CDS YP_001512246.1 158319739 5676077 765360..767669 1 NC_009922.1 PFAM: UvrD/REP helicase; KEGG: cpe:CPE1619 hypothetical protein; UvrD/REP helicase 767669 5676077 Clos_0691 Alkaliphilus oremlandii OhILAs UvrD/REP helicase YP_001512246.1 765360 D 350688 CDS YP_001512247.1 158319740 5676078 767791..768957 1 NC_009922.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: tpt:Tpet_0107 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 768957 5676078 Clos_0692 Alkaliphilus oremlandii OhILAs iron-containing alcohol dehydrogenase YP_001512247.1 767791 D 350688 CDS YP_001512248.1 158319741 5675836 769059..769238 1 NC_009922.1 KEGG: cpr:CPR_0880 hypothetical protein; hypothetical protein 769238 5675836 Clos_0693 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512248.1 769059 D 350688 CDS YP_001512249.1 158319742 5675837 769433..770011 1 NC_009922.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cdf:CD0677 putative RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 factor 770011 5675837 Clos_0694 Alkaliphilus oremlandii OhILAs ECF subfamily RNA polymerase sigma-24 factor YP_001512249.1 769433 D 350688 CDS YP_001512250.1 158319743 5675838 770013..771713 1 NC_009922.1 KEGG: bha:BH3497 hypothetical protein; putative transmembrane anti-sigma factor 771713 5675838 Clos_0695 Alkaliphilus oremlandii OhILAs putative transmembrane anti-sigma factor YP_001512250.1 770013 D 350688 CDS YP_001512251.1 158319744 5675839 complement(771819..772091) 1 NC_009922.1 hypothetical protein 772091 5675839 Clos_0696 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512251.1 771819 R 350688 CDS YP_001512252.1 158319745 5675840 773211..774839 1 NC_009922.1 KEGG: ctc:CTC02230 putative tellurium resistance protein; putative tellurium resistance protein 774839 5675840 Clos_0697 Alkaliphilus oremlandii OhILAs putative tellurium resistance protein YP_001512252.1 773211 D 350688 CDS YP_001512253.1 158319746 5675841 774870..775949 1 NC_009922.1 PFAM: toxic anion resistance family protein; KEGG: ctc:CTC02231 tellurite resistance protein; toxic anion resistance family protein 775949 5675841 Clos_0698 Alkaliphilus oremlandii OhILAs toxic anion resistance family protein YP_001512253.1 774870 D 350688 CDS YP_001512254.1 158319747 5675842 776085..776666 1 NC_009922.1 PFAM: stress protein; KEGG: ctc:CTC02234 tellurium resistance protein terD; stress protein 776666 5675842 Clos_0699 Alkaliphilus oremlandii OhILAs stress protein YP_001512254.1 776085 D 350688 CDS YP_001512255.1 158319748 5675843 776692..777372 1 NC_009922.1 PFAM: protein of unknown function DUF124; KEGG: drm:Dred_0344 protein of unknown function DUF124; hypothetical protein 777372 5675843 Clos_0700 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512255.1 776692 D 350688 CDS YP_001512256.1 158319749 5675844 777396..778001 1 NC_009922.1 PFAM: stress protein; KEGG: bsu:BG12767 similar to tellurium resistance protein; stress protein 778001 5675844 Clos_0701 Alkaliphilus oremlandii OhILAs stress protein YP_001512256.1 777396 D 350688 CDS YP_001512257.1 158319750 5678359 778038..778619 1 NC_009922.1 PFAM: stress protein; KEGG: bld:BLi00356 similar to tellurium resistance protein; RBL02593; stress protein 778619 5678359 Clos_0702 Alkaliphilus oremlandii OhILAs stress protein YP_001512257.1 778038 D 350688 CDS YP_001512258.1 158319751 5678360 778711..779829 1 NC_009922.1 KEGG: bca:BCE_5091 hypothetical protein; hypothetical protein 779829 5678360 Clos_0703 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512258.1 778711 D 350688 CDS YP_001512259.1 158319752 5678361 779789..782284 1 NC_009922.1 KEGG: sma:SAV5809 hypothetical protein; hypothetical protein 782284 5678361 Clos_0704 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512259.1 779789 D 350688 CDS YP_001512260.1 158319753 5678362 782351..783085 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spd:SPD_0464 ABC transporter, ATP-binding protein; ABC transporter 783085 5678362 Clos_0705 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512260.1 782351 D 350688 CDS YP_001512261.1 158319754 5678363 783082..784359 1 NC_009922.1 KEGG: ssp:SSP0963 putative transporter protein; hypothetical protein 784359 5678363 Clos_0706 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512261.1 783082 D 350688 CDS YP_001512262.1 158319755 5678364 784539..784916 1 NC_009922.1 PFAM: regulatory protein GntR HTH; KEGG: cno:NT01CX_2435 transcriptional regulator, GntR family; GntR family transcriptional regulator 784916 5678364 Clos_0707 Alkaliphilus oremlandii OhILAs GntR family transcriptional regulator YP_001512262.1 784539 D 350688 CDS YP_001512263.1 158319756 5678365 784920..785786 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbo:CBO2917 ABC transporter ATP-binding protein; ABC transporter 785786 5678365 Clos_0708 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512263.1 784920 D 350688 CDS YP_001512264.1 158319757 5678366 785854..786465 1 NC_009922.1 KEGG: pth:PTH_0277 hypothetical membrane protein; hypothetical protein 786465 5678366 Clos_0709 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512264.1 785854 D 350688 CDS YP_001512265.1 158319758 5678367 786589..787125 1 NC_009922.1 KEGG: tte:TTE0937 hypothetical protein; hypothetical protein 787125 5678367 Clos_0710 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512265.1 786589 D 350688 CDS YP_001512266.1 158319759 5677489 787662..789257 1 NC_009922.1 TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: cth:Cthe_0328 peptide chain release factor 3; peptide chain release factor 3 789257 5677489 Clos_0711 Alkaliphilus oremlandii OhILAs peptide chain release factor 3 YP_001512266.1 787662 D 350688 CDS YP_001512267.1 158319760 5677490 789453..790394 1 NC_009922.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: amt:Amet_3690 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit 790394 5677490 Clos_0712 Alkaliphilus oremlandii OhILAs D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit YP_001512267.1 789453 D 350688 CDS YP_001512268.1 158319761 5677491 790415..790765 1 NC_009922.1 KEGG: amt:Amet_3689 hypothetical protein; hypothetical protein 790765 5677491 Clos_0713 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512268.1 790415 D 350688 CDS YP_001512269.1 158319762 5677492 790907..791305 1 NC_009922.1 KEGG: amt:Amet_3684 UspA; hypothetical protein 791305 5677492 Clos_0714 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512269.1 790907 D 350688 CDS YP_001512270.1 158319763 5677493 791407..792363 1 NC_009922.1 KEGG: amt:Amet_3682 conserved hypothetical radical SAM protein; TIGRFAM: conserved hypothetical radical SAM protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; putative radical SAM protein 792363 5677493 Clos_0715 Alkaliphilus oremlandii OhILAs putative radical SAM protein YP_001512270.1 791407 D 350688 CDS YP_001512271.1 158319764 5677494 792766..793779 1 NC_009922.1 KEGG: amt:Amet_3679 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 793779 5677494 Clos_0716 Alkaliphilus oremlandii OhILAs glyceraldehyde-3-phosphate dehydrogenase, type I YP_001512271.1 792766 D 350688 CDS YP_001512272.1 158319765 5677495 794022..794828 1 NC_009922.1 PFAM: RelA/SpoT domain protein; KEGG: amt:Amet_3678 RelA/SpoT domain protein; RelA/SpoT domain-containing protein 794828 5677495 Clos_0717 Alkaliphilus oremlandii OhILAs RelA/SpoT domain-containing protein YP_001512272.1 794022 D 350688 CDS YP_001512273.1 158319766 5677496 794857..795546 1 NC_009922.1 PFAM: metallophosphoesterase; KEGG: amt:Amet_3677 metallophosphoesterase; metallophosphoesterase 795546 5677496 Clos_0718 Alkaliphilus oremlandii OhILAs metallophosphoesterase YP_001512273.1 794857 D 350688 CDS YP_001512274.1 158319767 5677497 complement(795585..796517) 1 NC_009922.1 KEGG: amt:Amet_3675 fructose-1,6-bisphosphate aldolase, class II; TIGRFAM: ketose-bisphosphate aldolase; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase class-II; fructose-1,6-bisphosphate aldolase 796517 5677497 Clos_0719 Alkaliphilus oremlandii OhILAs fructose-1,6-bisphosphate aldolase YP_001512274.1 795585 R 350688 CDS YP_001512275.1 158319768 5675817 796839..797354 1 NC_009922.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: amt:Amet_3674 CDP-diacylglycerol--serine O-phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 797354 5675817 Clos_0720 Alkaliphilus oremlandii OhILAs CDP-alcohol phosphatidyltransferase YP_001512275.1 796839 D 350688 CDS YP_001512276.1 158319769 5675818 797443..798171 1 NC_009922.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: amt:Amet_3672 pseudouridine synthase; pseudouridine synthase 798171 5675818 Clos_0721 Alkaliphilus oremlandii OhILAs pseudouridine synthase YP_001512276.1 797443 D 350688 CDS YP_001512277.1 158319770 5675819 798625..799467 1 NC_009922.1 PFAM: extracellular solute-binding protein family 3; KEGG: drm:Dred_2235 extracellular solute-binding protein, family 3; extracellular solute-binding protein 799467 5675819 Clos_0722 Alkaliphilus oremlandii OhILAs extracellular solute-binding protein YP_001512277.1 798625 D 350688 CDS YP_001512278.1 158319771 5675820 799532..800332 1 NC_009922.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: drm:Dred_2234 polar amino acid ABC transporter, inner membrane subunit; polar amino acid ABC transporter inner membrane subunit 800332 5675820 Clos_0723 Alkaliphilus oremlandii OhILAs polar amino acid ABC transporter inner membrane subunit YP_001512278.1 799532 D 350688 CDS YP_001512279.1 158319772 5675821 800320..801060 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: drm:Dred_2233 ABC transporter related; ABC transporter 801060 5675821 Clos_0724 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512279.1 800320 D 350688 CDS YP_001512280.1 158319773 5675822 801182..802534 1 NC_009922.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: putative RNA methylase; conserved hypothetical protein; (Uracil-5)-methyltransferase; KEGG: cdf:CD0406 putative tRNA (uracil-5-)-methyltransferase; RNA methyltransferase 802534 5675822 Clos_0725 Alkaliphilus oremlandii OhILAs RNA methyltransferase YP_001512280.1 801182 D 350688 CDS YP_001512281.1 158319774 5675824 803442..804092 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cdf:CD0462 two-component response regulator; two component transcriptional regulator 804092 5675824 Clos_0727 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001512281.1 803442 D 350688 CDS YP_001512282.1 158319775 5675825 804095..804958 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cbe:Cbei_2048 integral membrane sensor signal transduction histidine kinase; histidine kinase 804958 5675825 Clos_0728 Alkaliphilus oremlandii OhILAs histidine kinase YP_001512282.1 804095 D 350688 CDS YP_001512283.1 158319776 5676060 805078..805758 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: oih:OB0359 ABC transporter ATP-binding protein; ABC transporter 805758 5676060 Clos_0729 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512283.1 805078 D 350688 CDS YP_001512284.1 158319777 5676061 805751..808201 1 NC_009922.1 PFAM: protein of unknown function DUF214; KEGG: cac:CAC2731 predicted permease; hypothetical protein 808201 5676061 Clos_0730 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512284.1 805751 D 350688 CDS YP_001512285.1 158319778 5676062 808543..809313 1 NC_009922.1 PFAM: protein of unknown function DUF323; KEGG: bce:BC2800 hypothetical cytosolic protein; hypothetical protein 809313 5676062 Clos_0731 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512285.1 808543 D 350688 CDS YP_001512286.1 158319779 5676063 complement(809355..809735) 1 NC_009922.1 hypothetical protein 809735 5676063 Clos_0732 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512286.1 809355 R 350688 CDS YP_001512287.1 158319780 5676065 complement(810849..811568) 1 NC_009922.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: swo:Swol_2219 hypothetical protein; IstB ATP binding domain-containing protein 811568 5676065 Clos_0734 Alkaliphilus oremlandii OhILAs IstB ATP binding domain-containing protein YP_001512287.1 810849 R 350688 CDS YP_001512288.1 158319781 5676067 complement(812184..813017) 1 NC_009922.1 PFAM: Integrase catalytic region; KEGG: bcz:pE33L466_0288 transposase; integrase catalytic region 813017 5676067 Clos_0736 Alkaliphilus oremlandii OhILAs integrase catalytic region YP_001512288.1 812184 R 350688 CDS YP_001512289.1 158319782 5676068 complement(813020..813310) 1 NC_009922.1 PFAM: transposase IS3/IS911 family protein; KEGG: bha:BH3445 transposase (05); transposase IS3/IS911 family protein 813310 5676068 Clos_0737 Alkaliphilus oremlandii OhILAs transposase IS3/IS911 family protein YP_001512289.1 813020 R 350688 CDS YP_001512290.1 158319783 5677041 816979..817239 1 NC_009922.1 hypothetical protein 817239 5677041 Clos_0740 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512290.1 816979 D 350688 CDS YP_001512291.1 158319784 5677042 817436..817870 1 NC_009922.1 hypothetical protein 817870 5677042 Clos_0741 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512291.1 817436 D 350688 CDS YP_001512292.1 158319785 5677044 818785..819795 1 NC_009922.1 PFAM: Radical SAM domain protein; KEGG: btk:BT9727_3948 spore photoproduct lyase; radical SAM domain-containing protein 819795 5677044 Clos_0743 Alkaliphilus oremlandii OhILAs radical SAM domain-containing protein YP_001512292.1 818785 D 350688 CDS YP_001512293.1 158319786 5677045 820453..821340 1 NC_009922.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bsu:BG14032 similar to transcriptional regulator (LysR family); LysR family transcriptional regulator 821340 5677045 Clos_0744 Alkaliphilus oremlandii OhILAs LysR family transcriptional regulator YP_001512293.1 820453 D 350688 CDS YP_001512294.1 158319787 5677046 821397..822296 1 NC_009922.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: dsy:DSY1416 hypothetical protein; PhzF family phenazine biosynthesis protein 822296 5677046 Clos_0745 Alkaliphilus oremlandii OhILAs PhzF family phenazine biosynthesis protein YP_001512294.1 821397 D 350688 CDS YP_001512295.1 158319788 5677047 822540..823340 1 NC_009922.1 PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dsy:DSY3558 hypothetical protein; nitroreductase 823340 5677047 Clos_0746 Alkaliphilus oremlandii OhILAs nitroreductase YP_001512295.1 822540 D 350688 CDS YP_001512296.1 158319789 5676830 823949..825742 1 NC_009922.1 PFAM: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cdf:CD1738 two-component sensor histidine kinase; histidine kinase 825742 5676830 Clos_0748 Alkaliphilus oremlandii OhILAs histidine kinase YP_001512296.1 823949 D 350688 CDS YP_001512297.1 158319790 5676831 825729..827096 1 NC_009922.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cdf:CD1739 two-component response regulator; two component, sigma54 specific, Fis family transcriptional regulator 827096 5676831 Clos_0749 Alkaliphilus oremlandii OhILAs two component, sigma54 specific, Fis family transcriptional regulator YP_001512297.1 825729 D 350688 CDS YP_001512298.1 158319791 5676832 827272..828639 1 NC_009922.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: ppr:PBPRB1320 putative sodium/alanine symporter; amino acid carrier protein 828639 5676832 Clos_0750 Alkaliphilus oremlandii OhILAs amino acid carrier protein YP_001512298.1 827272 D 350688 CDS YP_001512299.1 158319792 5676833 828924..829340 1 NC_009922.1 KEGG: chu:CHU_2313 rifampin ADP-ribosylating transferase; rifampin ADP-ribosylating transferase 829340 5676833 Clos_0751 Alkaliphilus oremlandii OhILAs rifampin ADP-ribosylating transferase YP_001512299.1 828924 D 350688 CDS YP_001512300.1 158319793 5676834 829533..830165 1 NC_009922.1 PFAM: regulatory protein TetR; KEGG: btk:BT9727_2272 transcriptional regulator, TetR family; TetR family transcriptional regulator 830165 5676834 Clos_0752 Alkaliphilus oremlandii OhILAs TetR family transcriptional regulator YP_001512300.1 829533 D 350688 CDS YP_001512301.1 158319794 5676835 830197..831462 1 NC_009922.1 PFAM: major facilitator superfamily MFS_1; KEGG: bcz:pE33L466_0066 macrolide-efflux protein; major facilitator transporter 831462 5676835 Clos_0753 Alkaliphilus oremlandii OhILAs major facilitator transporter YP_001512301.1 830197 D 350688 CDS YP_001512302.1 158319795 5676836 831459..833813 1 NC_009922.1 PFAM: protein of unknown function DUF214; KEGG: bcz:BCZK2228 ABC transporter, permease; hypothetical protein 833813 5676836 Clos_0754 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512302.1 831459 D 350688 CDS YP_001512303.1 158319796 5676837 833825..834574 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bca:BCE_2513 ABC transporter, ATP-binding protein; ABC transporter 834574 5676837 Clos_0755 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512303.1 833825 D 350688 CDS YP_001512304.1 158319797 5676966 complement(834925..835692) 1 NC_009922.1 PFAM: regulatory protein MerR; TipAS antibiotic-recognition domain protein; KEGG: bcl:ABC3975 transcriptional activator, MerR family; MerR family transcriptional regulator 835692 5676966 Clos_0756 Alkaliphilus oremlandii OhILAs MerR family transcriptional regulator YP_001512304.1 834925 R 350688 CDS YP_001512305.1 158319798 5676967 836016..836486 1 NC_009922.1 KEGG: cac:CAC3664 predicted flavodoxin; flavodoxin 836486 5676967 Clos_0757 Alkaliphilus oremlandii OhILAs flavodoxin YP_001512305.1 836016 D 350688 CDS YP_001512306.1 158319799 5676968 836623..837150 1 NC_009922.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: cac:CAC1495 enzyme of dihydrofolate reductase family, ortholog YWFD B.subtilis; deaminase-reductase domain-containing protein 837150 5676968 Clos_0758 Alkaliphilus oremlandii OhILAs deaminase-reductase domain-containing protein YP_001512306.1 836623 D 350688 CDS YP_001512307.1 158319800 5676969 837350..837919 1 NC_009922.1 PFAM: regulatory protein TetR; KEGG: cbo:CBO2044 TetR-family transcriptional regulator; TetR family transcriptional regulator 837919 5676969 Clos_0759 Alkaliphilus oremlandii OhILAs TetR family transcriptional regulator YP_001512307.1 837350 D 350688 CDS YP_001512308.1 158319801 5676970 838078..839871 1 NC_009922.1 in group A Streptococci this protein was found to cross react with anti myosin antibodies and may play a role in rheumatic fever; myosin-cross-reactive antigen 839871 5676970 Clos_0760 Alkaliphilus oremlandii OhILAs myosin-cross-reactive antigen YP_001512308.1 838078 D 350688 CDS YP_001512309.1 158319802 5676971 839961..842081 1 NC_009922.1 KEGG: cbo:CBO2042 hypothetical protein; hypothetical protein 842081 5676971 Clos_0761 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512309.1 839961 D 350688 CDS YP_001512310.1 158319803 5676972 842078..843304 1 NC_009922.1 KEGG: cbo:CBO2041 hypothetical protein; hypothetical protein 843304 5676972 Clos_0762 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512310.1 842078 D 350688 CDS YP_001512311.1 158319804 5676973 843316..845253 1 NC_009922.1 PFAM: von Willebrand factor type A; KEGG: cbo:CBO2040 hypothetical protein; von Willebrand factor type A 845253 5676973 Clos_0763 Alkaliphilus oremlandii OhILAs von Willebrand factor type A YP_001512311.1 843316 D 350688 CDS YP_001512312.1 158319805 5676974 845667..846308 1 NC_009922.1 PFAM: transferase hexapeptide repeat containing protein; KEGG: dsy:DSY1145 hypothetical protein; chloramphenicol O-acetyltransferase 846308 5676974 Clos_0764 Alkaliphilus oremlandii OhILAs chloramphenicol O-acetyltransferase YP_001512312.1 845667 D 350688 CDS YP_001512313.1 158319806 5678134 846433..847344 1 NC_009922.1 KEGG: ctc:CTC01162 membrane associated protein; membrane associated protein 847344 5678134 Clos_0765 Alkaliphilus oremlandii OhILAs membrane associated protein YP_001512313.1 846433 D 350688 CDS YP_001512314.1 158319807 5678135 847747..849060 1 NC_009922.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 849060 5678135 Clos_0766 Alkaliphilus oremlandii OhILAs thiamine biosynthesis protein ThiC YP_001512314.1 847747 D 350688 CDS YP_001512315.1 158319808 5678136 849062..849550 1 NC_009922.1 TIGRFAM: thiW protein; PFAM: ThiW family protein; KEGG: ctc:CTC01754 hypothetical protein; thiW protein 849550 5678136 Clos_0767 Alkaliphilus oremlandii OhILAs thiW protein YP_001512315.1 849062 D 350688 CDS YP_001512316.1 158319809 5678137 849988..850455 1 NC_009922.1 hypothetical protein 850455 5678137 Clos_0768 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512316.1 849988 D 350688 CDS YP_001512317.1 158319810 5678138 complement(850468..851958) 1 NC_009922.1 PFAM: regulatory protein GntR HTH; KEGG: cbo:CBO0640 GntR-family transcriptional regulator; GntR family transcriptional regulator 851958 5678138 Clos_0769 Alkaliphilus oremlandii OhILAs GntR family transcriptional regulator YP_001512317.1 850468 R 350688 CDS YP_001512318.1 158319811 5678139 852131..852604 1 NC_009922.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: dsy:DSY1235 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 852604 5678139 Clos_0770 Alkaliphilus oremlandii OhILAs pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001512318.1 852131 D 350688 CDS YP_001512319.1 158319812 5678140 852769..853620 1 NC_009922.1 PFAM: Streptomycin adenylyltransferase; KEGG: ser:SEA0012 aminoglycoside 6-adenylyltransferase; adenylyltransferase 853620 5678140 Clos_0771 Alkaliphilus oremlandii OhILAs adenylyltransferase YP_001512319.1 852769 D 350688 CDS YP_001512320.1 158319813 5678141 853737..854315 1 NC_009922.1 KEGG: sen:SACE_1856 phosphotransferase (aminonucleoside antibiotic resistance); phosphotransferase 854315 5678141 Clos_0772 Alkaliphilus oremlandii OhILAs phosphotransferase YP_001512320.1 853737 D 350688 CDS YP_001512321.1 158319814 5678336 855088..855573 1 NC_009922.1 KEGG: cth:Cthe_3142 hypothetical protein; hypothetical protein 855573 5678336 Clos_0774 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512321.1 855088 D 350688 CDS YP_001512322.1 158319815 5678337 855738..856991 1 NC_009922.1 PFAM: UV-endonuclease UvdE; KEGG: cno:NT01CX_0232 UV DNA damage endonuclease (UV-endonuclease) UvdE; putative UV damage endonuclease 856991 uvsE 5678337 uvsE Alkaliphilus oremlandii OhILAs putative UV damage endonuclease YP_001512322.1 855738 D 350688 CDS YP_001512323.1 158319816 5678338 complement(857198..857401) 1 NC_009922.1 PFAM: protein of unknown function DUF378; KEGG: bsu:BG14050 hypothetical protein; hypothetical protein 857401 5678338 Clos_0776 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512323.1 857198 R 350688 CDS YP_001512324.1 158319817 5678339 857764..857979 1 NC_009922.1 PFAM: helix-turn-helix domain protein; KEGG: dsy:DSY0593 hypothetical protein; XRE family transcriptional regulator 857979 5678339 Clos_0777 Alkaliphilus oremlandii OhILAs XRE family transcriptional regulator YP_001512324.1 857764 D 350688 CDS YP_001512325.1 158319818 5678340 857966..858409 1 NC_009922.1 KEGG: dsy:DSY0594 hypothetical protein; hypothetical protein 858409 5678340 Clos_0778 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512325.1 857966 D 350688 CDS YP_001512326.1 158319819 5678341 858647..859330 1 NC_009922.1 PFAM: Abortive infection protein; KEGG: rrs:RoseRS_3666 abortive infection protein; abortive infection protein 859330 5678341 Clos_0779 Alkaliphilus oremlandii OhILAs abortive infection protein YP_001512326.1 858647 D 350688 CDS YP_001512327.1 158319820 5678342 859603..860340 1 NC_009922.1 PFAM: regulatory protein MerR; KEGG: dsy:DSY3460 hypothetical protein; MerR family transcriptional regulator 860340 5678342 Clos_0780 Alkaliphilus oremlandii OhILAs MerR family transcriptional regulator YP_001512327.1 859603 D 350688 CDS YP_001512328.1 158319821 5678343 860554..861276 1 NC_009922.1 KEGG: vco:VC0395_A2387 putative lipoprotein; hypothetical protein 861276 5678343 Clos_0781 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512328.1 860554 D 350688 CDS YP_001512329.1 158319822 5678723 861431..862030 1 NC_009922.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bat:BAS4558 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 862030 5678723 Clos_0782 Alkaliphilus oremlandii OhILAs ECF subfamily RNA polymerase sigma-24 factor YP_001512329.1 861431 D 350688 CDS YP_001512330.1 158319823 5678724 862017..863099 1 NC_009922.1 PFAM: Propeptide PepSY amd peptidase M4; KEGG: cth:Cthe_2522 membrane associated protein; peptidase 863099 5678724 Clos_0783 Alkaliphilus oremlandii OhILAs peptidase YP_001512330.1 862017 D 350688 CDS YP_001512331.1 158319824 5678725 863166..863867 1 NC_009922.1 PFAM: Propeptide PepSY amd peptidase M4; KEGG: cdf:CD3192 cell surface protein; peptidase 863867 5678725 Clos_0784 Alkaliphilus oremlandii OhILAs peptidase YP_001512331.1 863166 D 350688 CDS YP_001512332.1 158319825 5678726 864038..864472 1 NC_009922.1 PFAM: regulatory protein MarR; transcriptional regulator TrmB; KEGG: cbo:CBO1102 MarR-family transcriptional regulator; transcriptional regulator TrmB 864472 5678726 Clos_0785 Alkaliphilus oremlandii OhILAs transcriptional regulator TrmB YP_001512332.1 864038 D 350688 CDS YP_001512333.1 158319826 5678727 864469..864717 1 NC_009922.1 hypothetical protein 864717 5678727 Clos_0786 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512333.1 864469 D 350688 CDS YP_001512334.1 158319827 5678728 865069..865749 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rrs:RoseRS_2625 two component transcriptional regulator, winged helix family; two component transcriptional regulator 865749 5678728 Clos_0787 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001512334.1 865069 D 350688 CDS YP_001512335.1 158319828 5678729 865746..866882 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rrs:RoseRS_2626 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 866882 5678729 Clos_0788 Alkaliphilus oremlandii OhILAs integral membrane sensor signal transduction histidine kinase YP_001512335.1 865746 D 350688 CDS YP_001512336.1 158319829 5678730 866975..868099 1 NC_009922.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: cdf:CD1871 hypothetical protein; alkyl hydroperoxide reductase 868099 5678730 Clos_0789 Alkaliphilus oremlandii OhILAs alkyl hydroperoxide reductase YP_001512336.1 866975 D 350688 CDS YP_001512337.1 158319830 5678731 868262..869125 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cdf:CD1872 putative iron-sulfur-binding membrane protein; 4Fe-4S ferredoxin 869125 5678731 Clos_0790 Alkaliphilus oremlandii OhILAs 4Fe-4S ferredoxin YP_001512337.1 868262 D 350688 CDS YP_001512338.1 158319831 5676033 869446..869790 1 NC_009922.1 PFAM: microcompartments protein; KEGG: lmo:lmo1144 similar to Salmonelle enterica PduU protein; microcompartments protein 869790 5676033 Clos_0791 Alkaliphilus oremlandii OhILAs microcompartments protein YP_001512338.1 869446 D 350688 CDS YP_001512339.1 158319832 5676034 869807..870250 1 NC_009922.1 TIGRFAM: ethanolamine utilization protein, EutP; KEGG: efa:EF1638 propanediol utilization protein PduV; ethanolamine utilization protein, EutP 870250 5676034 Clos_0792 Alkaliphilus oremlandii OhILAs ethanolamine utilization protein, EutP YP_001512339.1 869807 D 350688 CDS YP_001512340.1 158319833 5676035 870253..870834 1 NC_009922.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: ssa:SSA_0513 ATP:cob(I)alamin adenosyltransferase, putative; ATP--cobalamin adenosyltransferase 870834 5676035 Clos_0793 Alkaliphilus oremlandii OhILAs ATP--cobalamin adenosyltransferase YP_001512340.1 870253 D 350688 CDS YP_001512341.1 158319834 5676036 870913..872052 1 NC_009922.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: lmf:LMOf2365_1181 alcohol dehydrogenase, iron-dependent; iron-containing alcohol dehydrogenase 872052 5676036 Clos_0794 Alkaliphilus oremlandii OhILAs iron-containing alcohol dehydrogenase YP_001512341.1 870913 D 350688 CDS YP_001512342.1 158319835 5676037 872077..872421 1 NC_009922.1 PFAM: microcompartments protein; KEGG: cdf:CD1908 putative ethanolamine/propanediol utilization protein; microcompartments protein 872421 5676037 Clos_0795 Alkaliphilus oremlandii OhILAs microcompartments protein YP_001512342.1 872077 D 350688 CDS YP_001512343.1 158319836 5676038 872571..874001 1 NC_009922.1 ethanolamine utilization protein EutA; reactivating factor for ethanolamine ammonia lyase 874001 eutA 5676038 eutA Alkaliphilus oremlandii OhILAs reactivating factor for ethanolamine ammonia lyase YP_001512343.1 872571 D 350688 CDS YP_001512344.1 158319837 5676039 874022..875389 1 NC_009922.1 PFAM: Ethanolamine ammonia lyase large subunit; KEGG: ssa:SSA_0519 ethanolamine ammonia-lyase large subunit, putative; ethanolamine ammonia lyase large subunit 875389 5676039 Clos_0797 Alkaliphilus oremlandii OhILAs ethanolamine ammonia lyase large subunit YP_001512344.1 874022 D 350688 CDS YP_001512345.1 158319838 5676040 875415..876326 1 NC_009922.1 catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 876326 5676040 Clos_0798 Alkaliphilus oremlandii OhILAs ethanolamine ammonia-lyase small subunit YP_001512345.1 875415 D 350688 CDS YP_001512346.1 158319839 5676041 876516..877169 1 NC_009922.1 PFAM: microcompartments protein; KEGG: efa:EF1626 ethanolamine utilization protein EutL; microcompartments protein 877169 5676041 Clos_0799 Alkaliphilus oremlandii OhILAs microcompartments protein YP_001512346.1 876516 D 350688 CDS YP_001512347.1 158319840 5677104 877182..877775 1 NC_009922.1 PFAM: microcompartments protein; KEGG: efa:EF1625 microcompartment protein family; microcompartments protein 877775 5677104 Clos_0800 Alkaliphilus oremlandii OhILAs microcompartments protein YP_001512347.1 877182 D 350688 CDS YP_001512348.1 158319841 5677105 877775..879253 1 NC_009922.1 TIGRFAM: acetaldehyde dehydrogenase (acetylating); PFAM: aldehyde dehydrogenase; KEGG: ssa:SSA_0523 aldehyde dehydrogenase, putative; acetaldehyde dehydrogenase 879253 5677105 Clos_0801 Alkaliphilus oremlandii OhILAs acetaldehyde dehydrogenase YP_001512348.1 877775 D 350688 CDS YP_001512349.1 158319842 5677106 879317..879610 1 NC_009922.1 PFAM: microcompartments protein; KEGG: lwe:lwe1138 propanediol/ethanolamine utilization protein; microcompartments protein 879610 5677106 Clos_0802 Alkaliphilus oremlandii OhILAs microcompartments protein YP_001512349.1 879317 D 350688 CDS YP_001512350.1 158319843 5677107 879692..880429 1 NC_009922.1 KEGG: lmo:lmo1181 similar to cobalamin adenosyl transferase; hypothetical protein 880429 5677107 Clos_0803 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512350.1 879692 D 350688 CDS YP_001512351.1 158319844 5677108 880440..881075 1 NC_009922.1 PFAM: Propanediol utilization protein; KEGG: ssa:SSA_0527 propanediol utilization protein PduL; propanediol utilization protein 881075 5677108 Clos_0804 Alkaliphilus oremlandii OhILAs propanediol utilization protein YP_001512351.1 880440 D 350688 CDS YP_001512352.1 158319845 5677109 881081..881689 1 NC_009922.1 KEGG: ssa:SSA_0528 conserved uncharacterized protein; hypothetical protein 881689 5677109 Clos_0805 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512352.1 881081 D 350688 CDS YP_001512353.1 158319846 5677110 881703..881975 1 NC_009922.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: ssa:SSA_0529 ethanolamine utilization protein, putative; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 881975 5677110 Clos_0806 Alkaliphilus oremlandii OhILAs ethanolamine utilization protein EutN/carboxysome structural protein Ccml YP_001512353.1 881703 D 350688 CDS YP_001512354.1 158319847 5677111 882014..883099 1 NC_009922.1 PFAM: Ethanolamine utilisation protein EutH; KEGG: efa:EF1618 ethanolamine utilization protein EutH; ethanolamine utilisation protein EutH 883099 5677111 Clos_0807 Alkaliphilus oremlandii OhILAs ethanolamine utilisation protein EutH YP_001512354.1 882014 D 350688 CDS YP_001512355.1 158319848 5677112 883139..883597 1 NC_009922.1 PFAM: Ethanolamine utilisation EutQ family protein; KEGG: efa:EF1617 hypothetical protein; ethanolamine utilisation EutQ family protein 883597 5677112 Clos_0808 Alkaliphilus oremlandii OhILAs ethanolamine utilisation EutQ family protein YP_001512355.1 883139 D 350688 CDS YP_001512356.1 158319849 5677621 883680..884240 1 NC_009922.1 KEGG: tde:TDE2415 hypothetical protein; hypothetical protein 884240 5677621 Clos_0809 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512356.1 883680 D 350688 CDS YP_001512357.1 158319850 5677622 884216..884791 1 NC_009922.1 KEGG: tde:TDE2415 hypothetical protein; hypothetical protein 884791 5677622 Clos_0810 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512357.1 884216 D 350688 CDS YP_001512358.1 158319851 5677623 884866..885927 1 NC_009922.1 KEGG: cth:Cthe_1483 hypothetical protein; hypothetical protein 885927 5677623 Clos_0811 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512358.1 884866 D 350688 CDS YP_001512359.1 158319852 5677624 885969..887327 1 NC_009922.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: chy:CHY_1254 sigma-54 dependent transcriptional regulator; putative sigma-54 specific transcriptional regulator 887327 5677624 Clos_0812 Alkaliphilus oremlandii OhILAs putative sigma-54 specific transcriptional regulator YP_001512359.1 885969 D 350688 CDS YP_001512360.1 158319853 5677625 887750..888946 1 NC_009922.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: cdf:CD0799 putative beta-alanine CoA-transferase; L-carnitine dehydratase/bile acid-inducible protein F 888946 5677625 Clos_0813 Alkaliphilus oremlandii OhILAs L-carnitine dehydratase/bile acid-inducible protein F YP_001512360.1 887750 D 350688 CDS YP_001512361.1 158319854 5677626 888948..890204 1 NC_009922.1 PFAM: Citrate transporter; Dicarboxylate carrier MatC domain protein; KEGG: cdf:CD0798 hypothetical protein; dicarboxylate carrier MatC domain-containing protein 890204 5677626 Clos_0814 Alkaliphilus oremlandii OhILAs dicarboxylate carrier MatC domain-containing protein YP_001512361.1 888948 D 350688 CDS YP_001512362.1 158319855 5677627 890257..891177 1 NC_009922.1 PFAM: pyruvate carboxyltransferase; KEGG: cdf:CD0797 putative hydroxymethylglutaryl-CoA lyase; pyruvate carboxyltransferase 891177 5677627 Clos_0815 Alkaliphilus oremlandii OhILAs pyruvate carboxyltransferase YP_001512362.1 890257 D 350688 CDS YP_001512363.1 158319856 5677628 891514..892413 1 NC_009922.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: fnu:FN1249 transcriptional regulator, DeoR family; helix-turn-helix type 11 domain-containing protein 892413 5677628 Clos_0816 Alkaliphilus oremlandii OhILAs helix-turn-helix type 11 domain-containing protein YP_001512363.1 891514 D 350688 CDS YP_001512364.1 158319857 5677629 892475..893017 1 NC_009922.1 PFAM: protein of unknown function DUF1706; KEGG: fnu:FN1248 hypothetical cytosolic protein; hypothetical protein 893017 5677629 Clos_0817 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512364.1 892475 D 350688 CDS YP_001512365.1 158319858 5677226 893847..894047 1 NC_009922.1 hypothetical protein 894047 5677226 Clos_0819 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512365.1 893847 D 350688 CDS YP_001512366.1 158319859 5677227 complement(894158..895912) 1 NC_009922.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD2817 ABC transporter, ATP-binding/permease protein; ABC transporter related 895912 5677227 Clos_0820 Alkaliphilus oremlandii OhILAs ABC transporter related YP_001512366.1 894158 R 350688 CDS YP_001512367.1 158319860 5677228 complement(895909..897639) 1 NC_009922.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD2818 ABC transporter, ATP-binding/permease protein; ABC transporter related 897639 5677228 Clos_0821 Alkaliphilus oremlandii OhILAs ABC transporter related YP_001512367.1 895909 R 350688 CDS YP_001512368.1 158319861 5677229 897785..898609 1 NC_009922.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: cbo:CBO1954 MerR-family transcriptional regulator; MerR family transcriptional regulator 898609 5677229 Clos_0822 Alkaliphilus oremlandii OhILAs MerR family transcriptional regulator YP_001512368.1 897785 D 350688 CDS YP_001512369.1 158319862 5677230 898672..899778 1 NC_009922.1 PFAM: metallophosphoesterase; KEGG: btl:BALH_0982 phosphoesterase; metallophosphoesterase 899778 5677230 Clos_0823 Alkaliphilus oremlandii OhILAs metallophosphoesterase YP_001512369.1 898672 D 350688 CDS YP_001512370.1 158319863 5677231 complement(900174..901556) 1 NC_009922.1 PFAM: sodium:dicarboxylate symporter; KEGG: tde:TDE0130 sodium/dicarboxylate symporter family protein; sodium:dicarboxylate symporter 901556 5677231 Clos_0824 Alkaliphilus oremlandii OhILAs sodium:dicarboxylate symporter YP_001512370.1 900174 R 350688 CDS YP_001512371.1 158319864 5677232 complement(901651..902676) 1 NC_009922.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: fnu:FN1055 cysteine synthase; pyridoxal-5'-phosphate-dependent protein beta subunit 902676 5677232 Clos_0825 Alkaliphilus oremlandii OhILAs pyridoxal-5'-phosphate-dependent protein beta subunit YP_001512371.1 901651 R 350688 CDS YP_001512372.1 158319865 5677233 902859..904910 1 NC_009922.1 PFAM: beta-lactamase; copper amine oxidase domain protein; KEGG: bca:BCE_2294 penicillin-binding protein, putative; beta-lactamase 904910 5677233 Clos_0826 Alkaliphilus oremlandii OhILAs beta-lactamase YP_001512372.1 902859 D 350688 CDS YP_001512373.1 158319866 5676994 904999..905427 1 NC_009922.1 hypothetical protein 905427 5676994 Clos_0827 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512373.1 904999 D 350688 CDS YP_001512374.1 158319867 5676995 complement(905624..906184) 1 NC_009922.1 PFAM: Chromate transporter; KEGG: cdf:CD0201 putative chromate transporter; chromate transporter 906184 5676995 Clos_0828 Alkaliphilus oremlandii OhILAs chromate transporter YP_001512374.1 905624 R 350688 CDS YP_001512375.1 158319868 5676996 complement(906177..906755) 1 NC_009922.1 PFAM: Chromate transporter; KEGG: ctc:CTC00660 chromate transport protein; chromate transporter 906755 5676996 Clos_0829 Alkaliphilus oremlandii OhILAs chromate transporter YP_001512375.1 906177 R 350688 CDS YP_001512376.1 158319869 5676997 906877..907749 1 NC_009922.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: tte:TTE0987 transcriptional regulator; LysR family transcriptional regulator 907749 5676997 Clos_0830 Alkaliphilus oremlandii OhILAs LysR family transcriptional regulator YP_001512376.1 906877 D 350688 CDS YP_001512377.1 158319870 5676998 complement(907832..908266) 1 NC_009922.1 PFAM: Ferritin Dps family protein; KEGG: fnu:FN1079 neutrophil-activating protein A; ferritin Dps family protein 908266 5676998 Clos_0831 Alkaliphilus oremlandii OhILAs ferritin Dps family protein YP_001512377.1 907832 R 350688 CDS YP_001512378.1 158319871 5676999 908380..908685 1 NC_009922.1 HxlR family transcriptional regulator 908685 5676999 Clos_0832 Alkaliphilus oremlandii OhILAs HxlR family transcriptional regulator YP_001512378.1 908380 D 350688 CDS YP_001512379.1 158319872 5677000 909037..909846 1 NC_009922.1 PFAM: alpha/beta hydrolase fold; KEGG: bsu:BG12442 similar to hydrolase; alpha/beta hydrolase 909846 5677000 Clos_0833 Alkaliphilus oremlandii OhILAs alpha/beta hydrolase YP_001512379.1 909037 D 350688 CDS YP_001512380.1 158319873 5677001 909868..911493 1 NC_009922.1 KEGG: dvl:Dvul_0418 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase 911493 5677001 Clos_0834 Alkaliphilus oremlandii OhILAs PAS/PAC sensor-containing diguanylate cyclase YP_001512380.1 909868 D 350688 CDS YP_001512381.1 158319874 5677002 911800..912342 1 NC_009922.1 hypothetical protein 912342 5677002 Clos_0835 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512381.1 911800 D 350688 CDS YP_001512382.1 158319875 5676601 912414..913817 1 NC_009922.1 PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: ctc:CTC00592 alginate O-acetylation protein; membrane bound O-acyl transferase MBOAT family protein 913817 5676601 Clos_0836 Alkaliphilus oremlandii OhILAs membrane bound O-acyl transferase MBOAT family protein YP_001512382.1 912414 D 350688 CDS YP_001512383.1 158319876 5676602 913831..914934 1 NC_009922.1 KEGG: ctc:CTC00591 hypothetical protein; hypothetical protein 914934 5676602 Clos_0837 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512383.1 913831 D 350688 CDS YP_001512384.1 158319877 5676603 complement(914987..915400) 1 NC_009922.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: swo:Swol_1359 hypothetical protein; hypothetical protein 915400 5676603 Clos_0838 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512384.1 914987 R 350688 CDS YP_001512385.1 158319878 5676604 915587..916537 1 NC_009922.1 PFAM: VanW family protein; KEGG: swo:Swol_1358 uncharacterized vancomycin resistance protein-like protein; VanW family protein 916537 5676604 Clos_0839 Alkaliphilus oremlandii OhILAs VanW family protein YP_001512385.1 915587 D 350688 CDS YP_001512386.1 158319879 5676605 916607..917851 1 NC_009922.1 PFAM: major facilitator superfamily MFS_1; KEGG: bce:BC2970 tetracycline resistance determinant TetV; major facilitator transporter 917851 5676605 Clos_0840 Alkaliphilus oremlandii OhILAs major facilitator transporter YP_001512386.1 916607 D 350688 CDS YP_001512387.1 158319880 5676606 917904..919370 1 NC_009922.1 PFAM: Orn/Lys/Arg decarboxylase major region; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cth:Cthe_1918 Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase major region 919370 5676606 Clos_0841 Alkaliphilus oremlandii OhILAs Orn/Lys/Arg decarboxylase major region YP_001512387.1 917904 D 350688 CDS YP_001512388.1 158319881 5676608 919909..920508 1 NC_009922.1 PFAM: Uracil-DNA glycosylase superfamily; KEGG: ppr:PBPRA3427 hypothetical protein; uracil-DNA glycosylase superfamily protein 920508 5676608 Clos_0843 Alkaliphilus oremlandii OhILAs uracil-DNA glycosylase superfamily protein YP_001512388.1 919909 D 350688 CDS YP_001512389.1 158319882 5676609 920594..921787 1 NC_009922.1 KEGG: ctc:CTC00154 hypothetical protein; hypothetical protein 921787 5676609 Clos_0844 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512389.1 920594 D 350688 CDS YP_001512390.1 158319883 5677526 922497..923858 1 NC_009922.1 PFAM: nucleoside recognition domain protein; KEGG: ctc:CTC00841 membrane protein; nucleoside recognition domain-containing protein 923858 5677526 Clos_0845 Alkaliphilus oremlandii OhILAs nucleoside recognition domain-containing protein YP_001512390.1 922497 D 350688 CDS YP_001512391.1 158319884 5677527 923871..924827 1 NC_009922.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: sai:Saci_0713 threonine dehydratase; pyridoxal-5'-phosphate-dependent protein beta subunit 924827 5677527 Clos_0846 Alkaliphilus oremlandii OhILAs pyridoxal-5'-phosphate-dependent protein beta subunit YP_001512391.1 923871 D 350688 CDS YP_001512392.1 158319885 5677528 complement(924988..925980) 1 NC_009922.1 TIGRFAM: Quinone oxidoreductase putative YhdH/YhfP; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: efa:EF2654 alcohol dehydrogenase, zinc-containing; quinone oxidoreductase putative YhdH/YhfP 925980 5677528 Clos_0847 Alkaliphilus oremlandii OhILAs quinone oxidoreductase putative YhdH/YhfP YP_001512392.1 924988 R 350688 CDS YP_001512393.1 158319886 5677529 926096..926515 1 NC_009922.1 PFAM: regulatory protein MarR; KEGG: saj:SaurJH9_2750 transcriptional regulator, MarR family; MarR family transcriptional regulator 926515 5677529 Clos_0848 Alkaliphilus oremlandii OhILAs MarR family transcriptional regulator YP_001512393.1 926096 D 350688 CDS YP_001512394.1 158319887 5677530 complement(926609..927376) 1 NC_009922.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mma:MM0185 short chain dehydrogenase/reductase; short-chain dehydrogenase/reductase SDR 927376 5677530 Clos_0849 Alkaliphilus oremlandii OhILAs short-chain dehydrogenase/reductase SDR YP_001512394.1 926609 R 350688 CDS YP_001512395.1 158319888 5677531 927667..928755 1 NC_009922.1 KEGG: cbo:CBO0382 membrane-associated acyltransferase; hypothetical protein 928755 5677531 Clos_0850 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512395.1 927667 D 350688 CDS YP_001512396.1 158319889 5677532 928944..930260 1 NC_009922.1 PFAM: aminotransferase class I and II; KEGG: fnu:FN1152 aspartate aminotransferase; class I and II aminotransferase 930260 5677532 Clos_0851 Alkaliphilus oremlandii OhILAs class I and II aminotransferase YP_001512396.1 928944 D 350688 CDS YP_001512397.1 158319890 5677533 930833..931708 1 NC_009922.1 PFAM: Pirin domain protein; KEGG: cpf:CPF_0792 pirin family protein; pirin domain-containing protein 931708 5677533 Clos_0852 Alkaliphilus oremlandii OhILAs pirin domain-containing protein YP_001512397.1 930833 D 350688 CDS YP_001512398.1 158319891 5677534 complement(931789..932358) 1 NC_009922.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: ctc:CTC01899 hypothetical protein; cupin 932358 5677534 Clos_0853 Alkaliphilus oremlandii OhILAs cupin YP_001512398.1 931789 R 350688 CDS YP_001512399.1 158319892 5676745 932456..933628 1 NC_009922.1 PFAM: purine catabolism PurC domain protein; KEGG: drm:Dred_0388 purine catabolism PurC domain protein; PucR family transcriptional regulator 933628 5676745 Clos_0854 Alkaliphilus oremlandii OhILAs PucR family transcriptional regulator YP_001512399.1 932456 D 350688 CDS YP_001512400.1 158319893 5676746 933784..934719 1 NC_009922.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cno:NT01CX_0959 integral membrane protein; hypothetical protein 934719 5676746 Clos_0855 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512400.1 933784 D 350688 CDS YP_001512401.1 158319894 5676747 complement(934807..936192) 1 NC_009922.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; KEGG: cdf:CD2108 putative drug/sodium antiporter; MATE efflux family protein 936192 5676747 Clos_0856 Alkaliphilus oremlandii OhILAs MATE efflux family protein YP_001512401.1 934807 R 350688 CDS YP_001512402.1 158319895 5676748 936450..936953 1 NC_009922.1 hypothetical protein 936953 5676748 Clos_0857 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512402.1 936450 D 350688 CDS YP_001512403.1 158319896 5676749 936925..938277 1 NC_009922.1 PFAM: cation transporter; KEGG: cth:Cthe_1658 potassium uptake protein, TrkH family; H(+)-transporting two-sector ATPase 938277 5676749 Clos_0858 Alkaliphilus oremlandii OhILAs H(+)-transporting two-sector ATPase YP_001512403.1 936925 D 350688 CDS YP_001512404.1 158319897 5676750 938303..938965 1 NC_009922.1 PFAM: TrkA-N domain protein; KEGG: cth:Cthe_1659 TrkA-N; TrkA domain-containing protein 938965 5676750 Clos_0859 Alkaliphilus oremlandii OhILAs TrkA domain-containing protein YP_001512404.1 938303 D 350688 CDS YP_001512405.1 158319898 5676751 939091..940431 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: dsy:DSY3762 hypothetical protein; integral membrane sensor signal transduction histidine kinase 940431 5676751 Clos_0860 Alkaliphilus oremlandii OhILAs integral membrane sensor signal transduction histidine kinase YP_001512405.1 939091 D 350688 CDS YP_001512406.1 158319899 5676752 940431..941126 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dsy:DSY3761 hypothetical protein; two component transcriptional regulator 941126 5676752 Clos_0861 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001512406.1 940431 D 350688 CDS YP_001512407.1 158319900 5676753 941532..942923 1 NC_009922.1 TIGRFAM: cobyrinic acid a,c-diamide synthase; PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: cno:NT01CX_0583 cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 942923 5676753 Clos_0862 Alkaliphilus oremlandii OhILAs cobyrinic acid a,c-diamide synthase YP_001512407.1 941532 D 350688 CDS YP_001512408.1 158319901 5676130 942971..944476 1 NC_009922.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 944476 5676130 Clos_0863 Alkaliphilus oremlandii OhILAs cobyric acid synthase YP_001512408.1 942971 D 350688 CDS YP_001512409.1 158319902 5676131 complement(944538..946142) 1 NC_009922.1 PFAM: Amidohydrolase 3; KEGG: bsu:BG13835 similar to hypothetical proteins; amidohydrolase 3 946142 5676131 Clos_0864 Alkaliphilus oremlandii OhILAs amidohydrolase 3 YP_001512409.1 944538 R 350688 CDS YP_001512410.1 158319903 5676132 complement(946184..947563) 1 NC_009922.1 PFAM: amino acid permease-associated region; KEGG: cbo:CBO1377 amino acid permease; amino acid permease 947563 5676132 Clos_0865 Alkaliphilus oremlandii OhILAs amino acid permease YP_001512410.1 946184 R 350688 CDS YP_001512411.1 158319904 5676133 948096..948299 1 NC_009922.1 KEGG: cth:Cthe_2995 hypothetical protein; hypothetical protein 948299 5676133 Clos_0866 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512411.1 948096 D 350688 CDS YP_001512412.1 158319905 5676134 948563..949795 1 NC_009922.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: sth:STH226 uracil permease; uracil-xanthine permease 949795 5676134 Clos_0867 Alkaliphilus oremlandii OhILAs uracil-xanthine permease YP_001512412.1 948563 D 350688 CDS YP_001512413.1 158319906 5676136 951862..952833 1 NC_009922.1 KEGG: ecp:ECP_4037 hypothetical protein YahE; hypothetical protein 952833 5676136 Clos_0870 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512413.1 951862 D 350688 CDS YP_001512414.1 158319907 5676137 952824..954380 1 NC_009922.1 PFAM: FdrA family protein; KEGG: mta:Moth_2122 FdrA; FdrA family protein 954380 5676137 Clos_0871 Alkaliphilus oremlandii OhILAs FdrA family protein YP_001512414.1 952824 D 350688 CDS YP_001512415.1 158319908 5678245 954395..954562 1 NC_009922.1 KEGG: mta:Moth_2121 protein of unknown function DUF1116; hypothetical protein 954562 5678245 Clos_0872 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512415.1 954395 D 350688 CDS YP_001512416.1 158319909 5678246 954596..955843 1 NC_009922.1 PFAM: protein of unknown function DUF1116; KEGG: mta:Moth_2121 protein of unknown function DUF1116; hypothetical protein 955843 5678246 Clos_0873 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512416.1 954596 D 350688 CDS YP_001512417.1 158319910 5678247 955873..956667 1 NC_009922.1 PFAM: cyclase family protein; KEGG: hwa:HQ1938A probable cyclase; cyclase family protein 956667 5678247 Clos_0874 Alkaliphilus oremlandii OhILAs cyclase family protein YP_001512417.1 955873 D 350688 CDS YP_001512418.1 158319911 5678248 956754..957641 1 NC_009922.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: drm:Dred_1548 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 957641 5678248 Clos_0875 Alkaliphilus oremlandii OhILAs nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001512418.1 956754 D 350688 CDS YP_001512419.1 158319912 5678249 957714..958901 1 NC_009922.1 PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: cdf:CD0799 putative beta-alanine CoA-transferase; formyl-CoA transferase 958901 5678249 Clos_0876 Alkaliphilus oremlandii OhILAs formyl-CoA transferase YP_001512419.1 957714 D 350688 CDS YP_001512420.1 158319913 5678250 958973..959827 1 NC_009922.1 PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: pth:PTH_1540 aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs; molybdopterin dehydrogenase FAD-binding 959827 5678250 Clos_0877 Alkaliphilus oremlandii OhILAs molybdopterin dehydrogenase FAD-binding YP_001512420.1 958973 D 350688 CDS YP_001512421.1 158319914 5678251 959829..960362 1 NC_009922.1 PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: drm:Dred_1503 (2Fe-2S)-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 960362 5678251 Clos_0878 Alkaliphilus oremlandii OhILAs 2Fe-2S iron-sulfur cluster binding domain-containing protein YP_001512421.1 959829 D 350688 CDS YP_001512422.1 158319915 5678252 960362..962740 1 NC_009922.1 PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: nca:Noca_4271 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 962740 5678252 Clos_0879 Alkaliphilus oremlandii OhILAs molybdopterin binding aldehyde oxidase and xanthine dehydrogenase YP_001512422.1 960362 D 350688 CDS YP_001512423.1 158319916 5678253 962906..963586 1 NC_009922.1 KEGG: dsy:DSY1981 hypothetical protein; hypothetical protein 963586 5678253 Clos_0880 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512423.1 962906 D 350688 CDS YP_001512424.1 158319917 5677764 963617..965149 1 NC_009922.1 PFAM: chemotaxis sensory transducer; KEGG: mba:Mbar_A0989 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 965149 5677764 Clos_0881 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer YP_001512424.1 963617 D 350688 CDS YP_001512425.1 158319918 5677765 complement(965204..965770) 1 NC_009922.1 PFAM: protein of unknown function DUF204; KEGG: cth:Cthe_1420 protein of unknown function DUF204; hypothetical protein 965770 5677765 Clos_0882 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512425.1 965204 R 350688 CDS YP_001512426.1 158319919 5677766 966005..967408 1 NC_009922.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cth:Cthe_2306 MATE efflux family protein; MATE efflux family protein 967408 5677766 Clos_0883 Alkaliphilus oremlandii OhILAs MATE efflux family protein YP_001512426.1 966005 D 350688 CDS YP_001512427.1 158319920 5677767 967656..969236 1 NC_009922.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 969236 5677767 Clos_0884 Alkaliphilus oremlandii OhILAs phosphoenolpyruvate carboxykinase YP_001512427.1 967656 D 350688 CDS YP_001512428.1 158319921 5677768 969570..970649 1 NC_009922.1 KEGG: ctc:CTC01832 hypothetical protein; hypothetical protein 970649 5677768 Clos_0885 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512428.1 969570 D 350688 CDS YP_001512429.1 158319922 5677769 complement(970708..972333) 1 NC_009922.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bha:BH3873 acetolactate synthase large subunit; thiamine pyrophosphate protein central region 972333 5677769 Clos_0886 Alkaliphilus oremlandii OhILAs thiamine pyrophosphate protein central region YP_001512429.1 970708 R 350688 CDS YP_001512430.1 158319923 5677770 complement(972351..972788) 1 NC_009922.1 hypothetical protein 972788 5677770 Clos_0887 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512430.1 972351 R 350688 CDS YP_001512431.1 158319924 5677771 complement(972997..973374) 1 NC_009922.1 hypothetical protein 973374 5677771 Clos_0888 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512431.1 972997 R 350688 CDS YP_001512432.1 158319925 5677772 973604..974695 1 NC_009922.1 PFAM: ApbE family lipoprotein; KEGG: ctc:CTC01829 putative thiamine biosynthesis lipoprotein ApbE; ApbE family lipoprotein 974695 5677772 Clos_0889 Alkaliphilus oremlandii OhILAs ApbE family lipoprotein YP_001512432.1 973604 D 350688 CDS YP_001512433.1 158319926 5678142 975136..976017 1 NC_009922.1 PFAM: protein of unknown function DUF161; KEGG: cdf:CD2617 hypothetical protein; hypothetical protein 976017 5678142 Clos_0890 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512433.1 975136 D 350688 CDS YP_001512434.1 158319927 5678143 976184..977278 1 NC_009922.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 977278 mnmA 5678143 mnmA Alkaliphilus oremlandii OhILAs tRNA-specific 2-thiouridylase MnmA YP_001512434.1 976184 D 350688 CDS YP_001512435.1 158319928 5678144 977414..977641 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cdf:CD0627A putative ferredoxin; 4Fe-4S ferredoxin 977641 5678144 Clos_0892 Alkaliphilus oremlandii OhILAs 4Fe-4S ferredoxin YP_001512435.1 977414 D 350688 CDS YP_001512436.1 158319929 5678145 977643..978236 1 NC_009922.1 KEGG: cdf:CD0628 hypothetical protein; hypothetical protein 978236 5678145 Clos_0893 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512436.1 977643 D 350688 CDS YP_001512437.1 158319930 5678146 978408..979145 1 NC_009922.1 PFAM: acyl-ACP thioesterase; KEGG: cth:Cthe_3072 acyl-ACP thioesterase; acyl-ACP thioesterase 979145 5678146 Clos_0894 Alkaliphilus oremlandii OhILAs acyl-ACP thioesterase YP_001512437.1 978408 D 350688 CDS YP_001512438.1 158319931 5678147 complement(979223..980950) 1 NC_009922.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: bce:BC0791 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 980950 5678147 Clos_0895 Alkaliphilus oremlandii OhILAs FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001512438.1 979223 R 350688 CDS YP_001512439.1 158319932 5678148 complement(981187..981474) 1 NC_009922.1 PFAM: regulatory protein ArsR; KEGG: cbo:CBO0182 ArsR-family transcriptional regulator; ArsR family transcriptional regulator 981474 5678148 Clos_0896 Alkaliphilus oremlandii OhILAs ArsR family transcriptional regulator YP_001512439.1 981187 R 350688 CDS YP_001512440.1 158319933 5678149 complement(981655..982608) 1 NC_009922.1 PFAM: chemotaxis sensory transducer; KEGG: cbo:CBO1558 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 982608 5678149 Clos_0897 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer YP_001512440.1 981655 R 350688 CDS YP_001512441.1 158319934 5678150 982846..983364 1 NC_009922.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: cno:NT01CX_0653 peptidyl-prolyl cis-trans isomerase; peptidyl-prolyl isomerase 983364 5678150 Clos_0898 Alkaliphilus oremlandii OhILAs peptidyl-prolyl isomerase YP_001512441.1 982846 D 350688 CDS YP_001512442.1 158319935 5678522 complement(983783..984355) 1 NC_009922.1 PFAM: manganese containing catalase; KEGG: ctc:CTC00870 spore coat protein; manganese containing catalase 984355 5678522 Clos_0899 Alkaliphilus oremlandii OhILAs manganese containing catalase YP_001512442.1 983783 R 350688 CDS YP_001512443.1 158319936 5678523 complement(984377..984631) 1 NC_009922.1 KEGG: mta:Moth_1391 spore coat peptide assembly protein cotJB; spore coat peptide assembly protein cotJB 984631 5678523 Clos_0900 Alkaliphilus oremlandii OhILAs spore coat peptide assembly protein cotJB YP_001512443.1 984377 R 350688 CDS YP_001512444.1 158319937 5678524 complement(984631..984876) 1 NC_009922.1 hypothetical protein 984876 5678524 Clos_0901 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512444.1 984631 R 350688 CDS YP_001512445.1 158319938 5678525 complement(985212..986120) 1 NC_009922.1 PFAM: NodS family protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: cpr:CPR_0075 putative methyltransferase; methyltransferase type 12 986120 5678525 Clos_0902 Alkaliphilus oremlandii OhILAs methyltransferase type 12 YP_001512445.1 985212 R 350688 CDS YP_001512446.1 158319939 5678526 986702..987214 1 NC_009922.1 hypothetical protein 987214 5678526 Clos_0903 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512446.1 986702 D 350688 CDS YP_001512447.1 158319940 5678527 987330..987794 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rci:RCIX1500 putative acetyltransferase (GNAT family); N-acetyltransferase GCN5 987794 5678527 Clos_0904 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001512447.1 987330 D 350688 CDS YP_001512448.1 158319941 5678528 complement(987996..988403) 1 NC_009922.1 PFAM: endodeoxyribonuclease RusA; KEGG: cdf:CD0562 putative endonuclease; endodeoxyribonuclease RusA 988403 5678528 Clos_0905 Alkaliphilus oremlandii OhILAs endodeoxyribonuclease RusA YP_001512448.1 987996 R 350688 CDS YP_001512449.1 158319942 5678529 988640..989182 1 NC_009922.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 S26A and S26B; KEGG: dsy:DSY1580 hypothetical protein; signal peptidase I 989182 5678529 Clos_0906 Alkaliphilus oremlandii OhILAs signal peptidase I YP_001512449.1 988640 D 350688 CDS YP_001512450.1 158319943 5678530 989196..990323 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; domain of unknown function DUF1730; KEGG: bsu:BG12236 similar to hypothetical proteins; hypothetical protein 990323 5678530 Clos_0907 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512450.1 989196 D 350688 CDS YP_001512451.1 158319944 5678531 990387..992738 1 NC_009922.1 PFAM: peptidase S16 lon domain protein; KEGG: cth:Cthe_1773 peptidase S16, lon-like protein; peptidase S16 lon domain-containing protein 992738 5678531 Clos_0908 Alkaliphilus oremlandii OhILAs peptidase S16 lon domain-containing protein YP_001512451.1 990387 D 350688 CDS YP_001512452.1 158319945 5678617 993064..994251 1 NC_009922.1 KEGG: tde:TDE2194 8-amino-7-oxononanoate synthase, putative; TIGRFAM: 8-amino-7-oxononanoate synthase; pyridoxal phosphate-dependent acyltransferase, putative; PFAM: aminotransferase class I and II; pyridoxal phosphate-dependent acyltransferase 994251 5678617 Clos_0909 Alkaliphilus oremlandii OhILAs pyridoxal phosphate-dependent acyltransferase YP_001512452.1 993064 D 350688 CDS YP_001512453.1 158319946 5678618 994486..995118 1 NC_009922.1 KEGG: cpr:CPR_1318 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; endonuclease III 995118 5678618 Clos_0910 Alkaliphilus oremlandii OhILAs endonuclease III YP_001512453.1 994486 D 350688 CDS YP_001512454.1 158319947 5678619 995235..997268 1 NC_009922.1 PFAM: cell division protein FtsA; KEGG: ctc:CTC00985 cell division protein FtsA; cell division protein FtsA 997268 5678619 Clos_0911 Alkaliphilus oremlandii OhILAs cell division protein FtsA YP_001512454.1 995235 D 350688 CDS YP_001512455.1 158319948 5678620 997338..998699 1 NC_009922.1 PFAM: VanW family protein; G5 domain protein; KEGG: tte:TTE1768 hypothetical protein; VanW family protein 998699 5678620 Clos_0912 Alkaliphilus oremlandii OhILAs VanW family protein YP_001512455.1 997338 D 350688 CDS YP_001512456.1 158319949 5678621 998796..999485 1 NC_009922.1 KEGG: ctc:CTC00335 hypothetical protein; hypothetical protein 999485 5678621 Clos_0913 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512456.1 998796 D 350688 CDS YP_001512457.1 158319950 5678622 999741..1001039 1 NC_009922.1 KEGG: bca:BCE_1868 hypothetical protein; hypothetical protein 1001039 5678622 Clos_0914 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512457.1 999741 D 350688 CDS YP_001512458.1 158319951 5678623 1001372..1002355 1 NC_009922.1 PFAM: periplasmic binding protein; KEGG: tte:TTE0372 ABC-type Fe3+-siderophores transport systems, periplasmic components; periplasmic binding protein 1002355 5678623 Clos_0915 Alkaliphilus oremlandii OhILAs periplasmic binding protein YP_001512458.1 1001372 D 350688 CDS YP_001512459.1 158319952 5678624 1002378..1003418 1 NC_009922.1 PFAM: transport system permease protein; KEGG: cno:NT01CX_2085 iron (III) dicitrate transport system permease protein; transport system permease protein 1003418 5678624 Clos_0916 Alkaliphilus oremlandii OhILAs transport system permease protein YP_001512459.1 1002378 D 350688 CDS YP_001512460.1 158319953 5677345 1003431..1004222 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rci:RRC303 ABC-type transport system, ATPase component; ABC transporter 1004222 5677345 Clos_0917 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512460.1 1003431 D 350688 CDS YP_001512461.1 158319954 5677346 complement(1004228..1004638) 1 NC_009922.1 PFAM: ferric-uptake regulator; KEGG: tte:TTE1767 Fe2+/Zn2+ uptake regulation proteins; ferric uptake regulator family protein 1004638 5677346 Clos_0918 Alkaliphilus oremlandii OhILAs ferric uptake regulator family protein YP_001512461.1 1004228 R 350688 CDS YP_001512462.1 158319955 5677347 1004852..1005679 1 NC_009922.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase type 3; KEGG: ctc:CTC00366 predicted hydrolase; cof family hydrolase 1005679 5677347 Clos_0919 Alkaliphilus oremlandii OhILAs cof family hydrolase YP_001512462.1 1004852 D 350688 CDS YP_001512463.1 158319956 5677348 1005744..1007558 1 NC_009922.1 PFAM: Peptidoglycan-binding LysM; metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: bcl:ABC0966 nucleotidase; 5'-nucleotidase domain-containing protein 1007558 5677348 Clos_0920 Alkaliphilus oremlandii OhILAs 5'-nucleotidase domain-containing protein YP_001512463.1 1005744 D 350688 CDS YP_001512464.1 158319957 5677349 complement(1007651..1008880) 1 NC_009922.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1008880 5677349 Clos_0921 Alkaliphilus oremlandii OhILAs tyrosyl-tRNA synthetase YP_001512464.1 1007651 R 350688 CDS YP_001512465.1 158319958 5677350 1009557..1010855 1 NC_009922.1 PFAM: C4-dicarboxylate anaerobic carrier; Citrate transporter; KEGG: lpf:lpl1924 hypothetical protein; citrate transporter 1010855 5677350 Clos_0922 Alkaliphilus oremlandii OhILAs citrate transporter YP_001512465.1 1009557 D 350688 CDS YP_001512466.1 158319959 5677351 1010915..1011688 1 NC_009922.1 KEGG: fnu:FN1584 beta-lactamase; beta-lactamase 1011688 5677351 Clos_0923 Alkaliphilus oremlandii OhILAs beta-lactamase YP_001512466.1 1010915 D 350688 CDS YP_001512467.1 158319960 5677352 1012245..1013408 1 NC_009922.1 PFAM: protein of unknown function DUF819; KEGG: pat:Patl_4172 protein of unknown function DUF819; hypothetical protein 1013408 5677352 Clos_0924 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512467.1 1012245 D 350688 CDS YP_001512468.1 158319961 5677353 1013440..1014861 1 NC_009922.1 PFAM: NLP/P60 protein; KEGG: pat:Patl_4171 NLP/P60; NLP/P60 protein 1014861 5677353 Clos_0925 Alkaliphilus oremlandii OhILAs NLP/P60 protein YP_001512468.1 1013440 D 350688 CDS YP_001512469.1 158319962 5677048 1014898..1015224 1 NC_009922.1 KEGG: gtn:GTNG_3178 hypothetical protein; hypothetical protein 1015224 5677048 Clos_0926 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512469.1 1014898 D 350688 CDS YP_001512470.1 158319963 5677049 1015358..1016446 1 NC_009922.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: cac:CAC0192 similar to chloromuconate cycloisomerase; mandelate racemase/muconate lactonizing protein 1016446 5677049 Clos_0927 Alkaliphilus oremlandii OhILAs mandelate racemase/muconate lactonizing protein YP_001512470.1 1015358 D 350688 CDS YP_001512471.1 158319964 5677050 1016761..1017261 1 NC_009922.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: cth:Cthe_0338 NADH-quinone oxidoreductase, E subunit; NADH dehydrogenase (ubiquinone) 24 kDa subunit 1017261 5677050 Clos_0928 Alkaliphilus oremlandii OhILAs NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_001512471.1 1016761 D 350688 CDS YP_001512472.1 158319965 5677051 1017280..1019187 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: mta:Moth_1718 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 1019187 5677051 Clos_0929 Alkaliphilus oremlandii OhILAs NADH dehydrogenase (quinone) YP_001512472.1 1017280 D 350688 CDS YP_001512473.1 158319966 5677052 1019190..1020926 1 NC_009922.1 TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; KEGG: csc:Csac_1864 hydrogenase, Fe-only; hydrogenase, Fe-only 1020926 5677052 Clos_0930 Alkaliphilus oremlandii OhILAs hydrogenase, Fe-only YP_001512473.1 1019190 D 350688 CDS YP_001512474.1 158319967 5677053 1021172..1021417 1 NC_009922.1 KEGG: cac:CAC0487 uncharacterized protein, ortholog of Thermotoga maritima (4981823); hypothetical protein 1021417 5677053 Clos_0931 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512474.1 1021172 D 350688 CDS YP_001512475.1 158319968 5677054 1021459..1022475 1 NC_009922.1 KEGG: cpe:CPE1487 putative sulfonate/nitrate transport system substrate-binding protein; putative sulfonate/nitrate transport system substrate-binding protein 1022475 5677054 Clos_0932 Alkaliphilus oremlandii OhILAs putative sulfonate/nitrate transport system substrate-binding protein YP_001512475.1 1021459 D 350688 CDS YP_001512476.1 158319969 5677055 1022450..1023211 1 NC_009922.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_1737 ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 1023211 5677055 Clos_0933 Alkaliphilus oremlandii OhILAs binding-protein-dependent transport systems inner membrane component YP_001512476.1 1022450 D 350688 CDS YP_001512477.1 158319970 5677056 1023189..1023887 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: drm:Dred_0439 ABC transporter related; ABC transporter 1023887 5677056 Clos_0934 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512477.1 1023189 D 350688 CDS YP_001512478.1 158319971 5677701 complement(1023894..1025126) 1 NC_009922.1 PFAM: MscS Mechanosensitive ion channel; KEGG: bfs:BF0722 putative transmembrane transport protein; MscS mechanosensitive ion channel 1025126 5677701 Clos_0935 Alkaliphilus oremlandii OhILAs MscS mechanosensitive ion channel YP_001512478.1 1023894 R 350688 CDS YP_001512479.1 158319972 5677702 1025324..1025797 1 NC_009922.1 Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) in DNA. Repairs alkylated guanine in DNA by stoichiometrically transferring the alkyl group at the O-6 position to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated; methylated-DNA--protein-cysteine methyltransferase 1025797 5677702 Clos_0936 Alkaliphilus oremlandii OhILAs methylated-DNA--protein-cysteine methyltransferase YP_001512479.1 1025324 D 350688 CDS YP_001512480.1 158319973 5677703 1025810..1026307 1 NC_009922.1 TIGRFAM: ybaK/ebsC protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: drm:Dred_3222 YbaK/EbsC protein; ybaK/ebsC protein 1026307 5677703 Clos_0937 Alkaliphilus oremlandii OhILAs ybaK/ebsC protein YP_001512480.1 1025810 D 350688 CDS YP_001512481.1 158319974 5677704 complement(1026406..1027221) 1 NC_009922.1 KEGG: dsy:DSY1337 hypothetical protein; hypothetical protein 1027221 5677704 Clos_0938 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512481.1 1026406 R 350688 CDS YP_001512482.1 158319975 5677705 complement(1027218..1027769) 1 NC_009922.1 KEGG: dsy:DSY1338 hypothetical protein; hypothetical protein 1027769 5677705 Clos_0939 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512482.1 1027218 R 350688 CDS YP_001512483.1 158319976 5677706 complement(1027772..1028260) 1 NC_009922.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: dsy:DSY1339 hypothetical protein; ECF subfamily RNA polymerase sigma-24 factor 1028260 5677706 Clos_0940 Alkaliphilus oremlandii OhILAs ECF subfamily RNA polymerase sigma-24 factor YP_001512483.1 1027772 R 350688 CDS YP_001512484.1 158319977 5677707 1028428..1029129 1 NC_009922.1 KEGG: cbo:CBO1176 membrane protein; membrane protein 1029129 5677707 Clos_0941 Alkaliphilus oremlandii OhILAs membrane protein YP_001512484.1 1028428 D 350688 CDS YP_001512485.1 158319978 5677708 1029289..1029741 1 NC_009922.1 KEGG: drm:Dred_1536 ubiquitin-associated-domain-containing protein; ubiquitin-associated domain-containing protein 1029741 5677708 Clos_0942 Alkaliphilus oremlandii OhILAs ubiquitin-associated domain-containing protein YP_001512485.1 1029289 D 350688 CDS YP_001512486.1 158319979 5677709 1029998..1030681 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dsy:DSY1143 hypothetical protein; two component transcriptional regulator 1030681 5677709 Clos_0943 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001512486.1 1029998 D 350688 CDS YP_001512487.1 158319980 5676486 1030674..1032248 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE1017 sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 1032248 5676486 Clos_0944 Alkaliphilus oremlandii OhILAs integral membrane sensor signal transduction histidine kinase YP_001512487.1 1030674 D 350688 CDS YP_001512488.1 158319981 5676487 1032688..1034328 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY4238 hypothetical protein; ABC transporter 1034328 5676487 Clos_0945 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512488.1 1032688 D 350688 CDS YP_001512489.1 158319982 5676488 1034472..1035311 1 NC_009922.1 KEGG: cth:Cthe_2305 putative undecaprenol kinase; TIGRFAM: putative undecaprenol kinase; PFAM: Bacitracin resistance protein BacA; putative undecaprenol kinase 1035311 5676488 Clos_0946 Alkaliphilus oremlandii OhILAs putative undecaprenol kinase YP_001512489.1 1034472 D 350688 CDS YP_001512490.1 158319983 5676489 1035601..1036947 1 NC_009922.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: msi:Msm_0152 Na+-driven multidrug efflux pump (MATE family), NorM; MATE efflux family protein 1036947 5676489 Clos_0947 Alkaliphilus oremlandii OhILAs MATE efflux family protein YP_001512490.1 1035601 D 350688 CDS YP_001512491.1 158319984 5676490 1037385..1038569 1 NC_009922.1 KEGG: tde:TDE0748 iron compound ABC transporter, periplasmic iron compound-binding protein, putative; iron compound ABC transporter, periplasmic iron compound-binding protein, putative 1038569 5676490 Clos_0948 Alkaliphilus oremlandii OhILAs iron compound ABC transporter, periplasmic iron compound-binding protein, putative YP_001512491.1 1037385 D 350688 CDS YP_001512492.1 158319985 5676491 1038604..1039620 1 NC_009922.1 PFAM: transport system permease protein; KEGG: tde:TDE0747 iron compound ABC transporter, permease protein, putative; transport system permease protein 1039620 5676491 Clos_0949 Alkaliphilus oremlandii OhILAs transport system permease protein YP_001512492.1 1038604 D 350688 CDS YP_001512493.1 158319986 5676492 1039617..1040780 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE0746 iron compound ABC transporter, ATP-binding protein, putative; ABC transporter 1040780 5676492 Clos_0950 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512493.1 1039617 D 350688 CDS YP_001512494.1 158319987 5676493 1040872..1041342 1 NC_009922.1 TIGRFAM: RNA methyltransferase, TrmH family, group 2; PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: cdf:CD0566 putative RNA methylase; RNA methyltransferase 1041342 5676493 Clos_0951 Alkaliphilus oremlandii OhILAs RNA methyltransferase YP_001512494.1 1040872 D 350688 CDS YP_001512495.1 158319988 5677383 1041790..1042635 1 NC_009922.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: csc:Csac_1297 DegV family protein; degV family protein 1042635 5677383 Clos_0952 Alkaliphilus oremlandii OhILAs degV family protein YP_001512495.1 1041790 D 350688 CDS YP_001512496.1 158319989 5677384 1043108..1043503 1 NC_009922.1 KEGG: cbo:CBO1255 component of glycine reductase complex; component of glycine reductase complex 1043503 5677384 Clos_0953 Alkaliphilus oremlandii OhILAs component of glycine reductase complex YP_001512496.1 1043108 D 350688 CDS YP_001512497.1 158319990 5677385 1043598..1044542 1 NC_009922.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; FAD dependent oxidoreductase; KEGG: cbo:CBO1259 thioredoxin reductase; thioredoxin reductase 1044542 5677385 Clos_0954 Alkaliphilus oremlandii OhILAs thioredoxin reductase YP_001512497.1 1043598 D 350688 CDS YP_001512498.1 158319991 5677386 1044570..1044887 1 NC_009922.1 PFAM: Thioredoxin domain; KEGG: cdf:CD2355 thioredoxin; thioredoxin domain-containing protein 1044887 5677386 Clos_0955 Alkaliphilus oremlandii OhILAs thioredoxin domain-containing protein YP_001512498.1 1044570 D 350688 CDS YP_001512499.1 158319992 5677387 1044958..1046244 1 NC_009922.1 PFAM: Glycine/sarcosine/betaine reductase complex protein B alpha and beta subunits; KEGG: cdf:CD2354 glycine reductase complex component B alpha and beta subunits; sarcosine reductase 1046244 5677387 Clos_0956 Alkaliphilus oremlandii OhILAs sarcosine reductase YP_001512499.1 1044958 D 350688 CDS YP_001512500.1 158319993 5677388 1046301..1046777 1 NC_009922.1 GrdA accepts a carboxymethylselenoether from protein B and transfers it to protein C forming a protein C-bound acetyl-thioester; oxidized GrdA is then reduced by thioredoxin; glycine/sarcosine/betaine reductase complex protein A 1046777 5677388 Clos_0957 Alkaliphilus oremlandii OhILAs glycine/sarcosine/betaine reductase complex protein A YP_001512500.1 1046301 D 350688 CDS YP_001512501.1 158319994 5677389 1046820..1048127 1 NC_009922.1 KEGG: cdf:CD2351 glycine reductase complex component B gamma subunit; Contains selenocysteine; TIGRFAM: glycine reductase, selenoprotein B; selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; PFAM: Selenoprotein B glycine/betaine/sarcosine/D-proline reductase; selenoprotein B 1048127 5677389 Clos_0958 Alkaliphilus oremlandii OhILAs selenoprotein B YP_001512501.1 1046820 D 350688 CDS YP_001512502.1 158319995 5677390 1048266..1049807 1 NC_009922.1 PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: cbo:CBO1263 glycine/sarcosine/betaine reductase complex component C beta subunit; sarcosine reductase 1049807 5677390 Clos_0959 Alkaliphilus oremlandii OhILAs sarcosine reductase YP_001512502.1 1048266 D 350688 CDS YP_001512503.1 158319996 5677583 1049820..1051004 1 NC_009922.1 PFAM: fatty acid synthesis plsX protein; KEGG: cbo:CBO1264 glycine/sarcosine/betaine reductase complex component C alpha subunit; glycine reductase 1051004 5677583 Clos_0960 Alkaliphilus oremlandii OhILAs glycine reductase YP_001512503.1 1049820 D 350688 CDS YP_001512504.1 158319997 5677584 1051417..1052505 1 NC_009922.1 PFAM: basic membrane lipoprotein; KEGG: tpa:TP0319 putative simple sugar transport system substrate-binding protein; basic membrane lipoprotein 1052505 5677584 Clos_0961 Alkaliphilus oremlandii OhILAs basic membrane lipoprotein YP_001512504.1 1051417 D 350688 CDS YP_001512505.1 158319998 5677585 1052606..1054135 1 NC_009922.1 KEGG: hiq:CGSHiGG_05855 hypothetical protein; hypothetical protein 1054135 5677585 Clos_0962 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512505.1 1052606 D 350688 CDS YP_001512506.1 158319999 5677586 1054125..1054853 1 NC_009922.1 PFAM: Radical SAM domain protein; KEGG: hin:HI0520 hypothetical protein; radical SAM domain-containing protein 1054853 5677586 Clos_0963 Alkaliphilus oremlandii OhILAs radical SAM domain-containing protein YP_001512506.1 1054125 D 350688 CDS YP_001512507.1 158320000 5677587 1054873..1056408 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpf:CPF_1831 ABC transporter, ATP-binding protein; ABC transporter 1056408 5677587 Clos_0964 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512507.1 1054873 D 350688 CDS YP_001512508.1 158320001 5677588 1056401..1057510 1 NC_009922.1 PFAM: inner-membrane translocator; KEGG: tpa:TP0322 putative simple sugar transport system permease protein; inner-membrane translocator 1057510 5677588 Clos_0965 Alkaliphilus oremlandii OhILAs inner-membrane translocator YP_001512508.1 1056401 D 350688 CDS YP_001512509.1 158320002 5677589 1057510..1058457 1 NC_009922.1 PFAM: inner-membrane translocator; KEGG: tpa:TP0323 putative simple sugar transport system permease protein; inner-membrane translocator 1058457 5677589 Clos_0966 Alkaliphilus oremlandii OhILAs inner-membrane translocator YP_001512509.1 1057510 D 350688 CDS YP_001512510.1 158320003 5677590 1058681..1060066 1 NC_009922.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 factor; sigma-54 factor core-binding region; sigma-54 DNA-binding domain protein; KEGG: pth:PTH_2724 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog; RNA polymerase sigma 54 subunit RpoN 1060066 5677590 Clos_0967 Alkaliphilus oremlandii OhILAs RNA polymerase sigma 54 subunit RpoN YP_001512510.1 1058681 D 350688 CDS YP_001512511.1 158320004 5677591 1060331..1061350 1 NC_009922.1 PFAM: putative sugar-binding domain protein; KEGG: tte:TTE1763 Transcriptional regulator, contains sigma factor-related N-terminal domain; DeoR family transcriptional regulator 1061350 5677591 Clos_0968 Alkaliphilus oremlandii OhILAs DeoR family transcriptional regulator YP_001512511.1 1060331 D 350688 CDS YP_001512512.1 158320005 5677574 1061363..1062376 1 NC_009922.1 KEGG: csc:Csac_1953 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 1062376 5677574 Clos_0969 Alkaliphilus oremlandii OhILAs glyceraldehyde-3-phosphate dehydrogenase, type I YP_001512512.1 1061363 D 350688 CDS YP_001512513.1 158320006 5677575 1062507..1063700 1 NC_009922.1 PFAM: phosphoglycerate kinase; KEGG: tte:TTE1761 3-phosphoglycerate kinase; phosphoglycerate kinase 1063700 5677575 Clos_0970 Alkaliphilus oremlandii OhILAs phosphoglycerate kinase YP_001512513.1 1062507 D 350688 CDS YP_001512514.1 158320007 5677576 1063715..1064461 1 NC_009922.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1064461 tpiA 5677576 tpiA Alkaliphilus oremlandii OhILAs triosephosphate isomerase YP_001512514.1 1063715 D 350688 CDS YP_001512515.1 158320008 5677577 1064476..1066011 1 NC_009922.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 1066011 5677577 Clos_0972 Alkaliphilus oremlandii OhILAs phosphoglyceromutase YP_001512515.1 1064476 D 350688 CDS YP_001512516.1 158320009 5677578 1066029..1067315 1 NC_009922.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1067315 eno 5677578 eno Alkaliphilus oremlandii OhILAs phosphopyruvate hydratase YP_001512516.1 1066029 D 350688 CDS YP_001512517.1 158320010 5677579 1067541..1067777 1 NC_009922.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: swo:Swol_0277 preprotein translocase, SecG subunit; preprotein translocase, SecG subunit 1067777 5677579 Clos_0974 Alkaliphilus oremlandii OhILAs preprotein translocase, SecG subunit YP_001512517.1 1067541 D 350688 CDS YP_001512518.1 158320011 5677580 1067823..1069835 1 NC_009922.1 pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 1069835 hppA 5677580 hppA Alkaliphilus oremlandii OhILAs membrane-bound proton-translocating pyrophosphatase YP_001512518.1 1067823 D 350688 CDS YP_001512519.1 158320012 5677581 1069961..1070263 1 NC_009922.1 PFAM: protein of unknown function DUF1294; KEGG: cpr:CPR_0517 hypothetical protein; hypothetical protein 1070263 5677581 Clos_0976 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512519.1 1069961 D 350688 CDS YP_001512520.1 158320013 5677582 1070301..1072418 1 NC_009922.1 KEGG: cbo:CBO0232 ribonuclease R; TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; RNA binding S1 domain protein; Ribonuclease B OB region domain; SMART: Cold shock protein; ribonuclease R 1072418 5677582 Clos_0977 Alkaliphilus oremlandii OhILAs ribonuclease R YP_001512520.1 1070301 D 350688 CDS YP_001512521.1 158320014 5677473 1072550..1073017 1 NC_009922.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1073017 smpB 5677473 smpB Alkaliphilus oremlandii OhILAs SsrA-binding protein YP_001512521.1 1072550 D 350688 CDS YP_001512522.1 158320015 5677475 1073601..1075838 1 NC_009922.1 KEGG: ctc:CTC02090 ATP-dependent DNA helicase recQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases; ATP-dependent DNA helicase RecQ 1075838 5677475 Clos_0979 Alkaliphilus oremlandii OhILAs ATP-dependent DNA helicase RecQ YP_001512522.1 1073601 D 350688 CDS YP_001512523.1 158320016 5677476 1075939..1076721 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH0286 ABC transporter (ATP-binding protein); ABC transporter 1076721 5677476 Clos_0980 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512523.1 1075939 D 350688 CDS YP_001512524.1 158320017 5677477 1076711..1078750 1 NC_009922.1 PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_2111 protein of unknown function DUF214; hypothetical protein 1078750 5677477 Clos_0981 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512524.1 1076711 D 350688 CDS YP_001512525.1 158320018 5677478 1078762..1079439 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: bha:BH0288 two-component response regulator; two component transcriptional regulator 1079439 5677478 Clos_0982 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001512525.1 1078762 D 350688 CDS YP_001512526.1 158320019 5677479 1079436..1080458 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; KEGG: bcl:ABC0255 two-component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 1080458 5677479 Clos_0983 Alkaliphilus oremlandii OhILAs integral membrane sensor signal transduction histidine kinase YP_001512526.1 1079436 D 350688 CDS YP_001512527.1 158320020 5677480 1080593..1081558 1 NC_009922.1 PFAM: dihydrouridine synthase DuS; KEGG: cpf:CPF_1482 dihydrouridine synthase family protein; dihydrouridine synthase DuS 1081558 5677480 Clos_0984 Alkaliphilus oremlandii OhILAs dihydrouridine synthase DuS YP_001512527.1 1080593 D 350688 CDS YP_001512528.1 158320021 5675889 1081691..1082497 1 NC_009922.1 KEGG: cdf:CD3040 hypothetical protein; hypothetical protein 1082497 5675889 Clos_0985 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512528.1 1081691 D 350688 CDS YP_001512529.1 158320022 5675890 1082510..1083640 1 NC_009922.1 PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cdf:CD3039 hypothetical protein; ATPase 1083640 5675890 Clos_0986 Alkaliphilus oremlandii OhILAs ATPase YP_001512529.1 1082510 D 350688 CDS YP_001512530.1 158320023 5675891 1083645..1085045 1 NC_009922.1 KEGG: cdf:CD3038 hypothetical protein; hypothetical protein 1085045 5675891 Clos_0987 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512530.1 1083645 D 350688 CDS YP_001512531.1 158320024 5675892 1085376..1085852 1 NC_009922.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: cth:Cthe_0428 NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH dehydrogenase (ubiquinone) 24 kDa subunit 1085852 5675892 Clos_0988 Alkaliphilus oremlandii OhILAs NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_001512531.1 1085376 D 350688 CDS YP_001512532.1 158320025 5675893 1085853..1087724 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: cth:Cthe_0429 NADH dehydrogenase (quinone); NADH dehydrogenase (quinone) 1087724 5675893 Clos_0989 Alkaliphilus oremlandii OhILAs NADH dehydrogenase (quinone) YP_001512532.1 1085853 D 350688 CDS YP_001512533.1 158320026 5675894 1087728..1089431 1 NC_009922.1 TIGRFAM: hydrogenase, Fe-only; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; hydrogenase large subunit domain protein; KEGG: cth:Cthe_0430 hydrogenase, Fe-only; hydrogenase, Fe-only 1089431 5675894 Clos_0990 Alkaliphilus oremlandii OhILAs hydrogenase, Fe-only YP_001512533.1 1087728 D 350688 CDS YP_001512534.1 158320027 5675895 1089558..1090613 1 NC_009922.1 catalyzes the formation of biotin from dethiobiotin and sulfur; biotin synthase 1090613 5675895 Clos_0991 Alkaliphilus oremlandii OhILAs biotin synthase YP_001512534.1 1089558 D 350688 CDS YP_001512535.1 158320028 5675896 1090610..1091983 1 NC_009922.1 in Escherichia coli this enzyme functions in thiamine biosynthesis along with thiFSGI and IscS; with ThiFSG catalyzes the formation of thiazole phosphate from tyrosine, cysteine and 1-deoxy-D-xylulose-5-phosphate; forms a complex with ThiG; contains an iron-sulfur center; in Thermotoga this enzyme has an extra C-terminal domain; thiamine biosynthesis protein ThiH 1091983 thiH 5675896 thiH Alkaliphilus oremlandii OhILAs thiamine biosynthesis protein ThiH YP_001512535.1 1090610 D 350688 CDS YP_001512536.1 158320029 5675897 1091998..1093233 1 NC_009922.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: cno:NT01CX_1486 GTP-binding protein; small GTP-binding protein 1093233 5675897 Clos_0993 Alkaliphilus oremlandii OhILAs small GTP-binding protein YP_001512536.1 1091998 D 350688 CDS YP_001512537.1 158320030 5676736 1094127..1094633 1 NC_009922.1 PFAM: RNA-binding S4 domain protein; KEGG: bce:BC4965 hypothetical cytosolic protein; RNA-binding S4 domain-containing protein 1094633 5676736 Clos_0994 Alkaliphilus oremlandii OhILAs RNA-binding S4 domain-containing protein YP_001512537.1 1094127 D 350688 CDS YP_001512538.1 158320031 5676737 1094797..1095675 1 NC_009922.1 PFAM: Methyltransferase type 11; KEGG: gtn:GTNG_1573 ribosomal RNA large subunit methyltransferase A; methyltransferase type 11 1095675 5676737 Clos_0995 Alkaliphilus oremlandii OhILAs methyltransferase type 11 YP_001512538.1 1094797 D 350688 CDS YP_001512539.1 158320032 5676738 1095882..1097132 1 NC_009922.1 PFAM: GTP-binding protein HSR1-related; KEGG: cdf:CD2209 putative GTP-binding protein; GTP-binding protein HSR1-related 1097132 5676738 Clos_0996 Alkaliphilus oremlandii OhILAs GTP-binding protein HSR1-related YP_001512539.1 1095882 D 350688 CDS YP_001512540.1 158320033 5676739 1097406..1097795 1 NC_009922.1 KEGG: bat:BAS2607 hypothetical protein; hypothetical protein 1097795 5676739 Clos_0997 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512540.1 1097406 D 350688 CDS YP_001512541.1 158320034 5676740 1097825..1098751 1 NC_009922.1 KEGG: bha:BH1891 hypothetical protein; hypothetical protein 1098751 5676740 Clos_0998 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512541.1 1097825 D 350688 CDS YP_001512542.1 158320035 5676741 1098891..1100648 1 NC_009922.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; CBS domain containing protein; EAL domain protein; KEGG: cac:CAC2702 possible signal transduction protein (containing EAL, CBS and GGDEF domains); diguanylate cyclase/phosphodiesterase 1100648 5676741 Clos_0999 Alkaliphilus oremlandii OhILAs diguanylate cyclase/phosphodiesterase YP_001512542.1 1098891 D 350688 CDS YP_001512543.1 158320036 5676742 1101109..1101603 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC3322 predicted acetyltransferase; N-acetyltransferase GCN5 1101603 5676742 Clos_1000 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001512543.1 1101109 D 350688 CDS YP_001512544.1 158320037 5676743 1102024..1104042 1 NC_009922.1 PFAM: tRNA synthetase class I (M); KEGG: chu:CHU_2689 methionine--tRNA ligase (methionyl-tRNA synthetase); methionine--tRNA ligase 1104042 5676743 Clos_1001 Alkaliphilus oremlandii OhILAs methionine--tRNA ligase YP_001512544.1 1102024 D 350688 CDS YP_001512545.1 158320038 5676744 1104329..1105843 1 NC_009922.1 TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: tte:TTE2002 glycerol kinase; glycerol kinase 1105843 5676744 Clos_1002 Alkaliphilus oremlandii OhILAs glycerol kinase YP_001512545.1 1104329 D 350688 CDS YP_001512546.1 158320039 5675880 1106242..1107864 1 NC_009922.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1107864 5675880 Clos_1003 Alkaliphilus oremlandii OhILAs methionyl-tRNA synthetase YP_001512546.1 1106242 D 350688 CDS YP_001512547.1 158320040 5675881 1108116..1108484 1 NC_009922.1 hypothetical protein 1108484 5675881 Clos_1004 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512547.1 1108116 D 350688 CDS YP_001512548.1 158320041 5675882 1108521..1109087 1 NC_009922.1 PFAM: Tellurite resistance protein TehB; Methyltransferase type 12; KEGG: cno:NT01CX_2005 hypothetical protein; tellurite resistance protein TehB 1109087 5675882 Clos_1005 Alkaliphilus oremlandii OhILAs tellurite resistance protein TehB YP_001512548.1 1108521 D 350688 CDS YP_001512549.1 158320042 5675883 1109165..1109989 1 NC_009922.1 PFAM: peptidase M55 D-aminopeptidase; KEGG: lin:lin0201 similar to dipeptide ABC transporter; peptidase M55 D-aminopeptidase 1109989 5675883 Clos_1006 Alkaliphilus oremlandii OhILAs peptidase M55 D-aminopeptidase YP_001512549.1 1109165 D 350688 CDS YP_001512550.1 158320043 5675884 1110029..1110337 1 NC_009922.1 hypothetical protein 1110337 5675884 Clos_1007 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512550.1 1110029 D 350688 CDS YP_001512551.1 158320044 5675885 1110345..1111442 1 NC_009922.1 KEGG: cdf:CD2126 hypothetical protein; hypothetical protein 1111442 5675885 Clos_1008 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512551.1 1110345 D 350688 CDS YP_001512552.1 158320045 5675886 1111531..1112316 1 NC_009922.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bce:BC4034 nitrilase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 1112316 5675886 Clos_1009 Alkaliphilus oremlandii OhILAs nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_001512552.1 1111531 D 350688 CDS YP_001512553.1 158320046 5675887 complement(1112377..1112580) 1 NC_009922.1 PFAM: TOBE domain protein; KEGG: rru:Rru_A1539 molybdenum-pterin binding protein; TOBE domain-containing protein 1112580 5675887 Clos_1010 Alkaliphilus oremlandii OhILAs TOBE domain-containing protein YP_001512553.1 1112377 R 350688 CDS YP_001512554.1 158320047 5675888 1113218..1113946 1 NC_009922.1 TIGRFAM: cobalamin biosynthesis protein CbiM; PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: cdf:CD0324 putative cobalt transport protein; cobalamin biosynthesis protein CbiM 1113946 5675888 Clos_1011 Alkaliphilus oremlandii OhILAs cobalamin biosynthesis protein CbiM YP_001512554.1 1113218 D 350688 CDS YP_001512555.1 158320048 5677728 1113933..1114226 1 NC_009922.1 TIGRFAM: cobalt transport protein; PFAM: Cobalt transport protein CbiN; KEGG: cdf:CD0325 cobalt transport protein; cobalt transport protein 1114226 5677728 Clos_1012 Alkaliphilus oremlandii OhILAs cobalt transport protein YP_001512555.1 1113933 D 350688 CDS YP_001512556.1 158320049 5677729 1114213..1114893 1 NC_009922.1 TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: cdf:CD0326 cobalt transport protein; cobalt ABC transporter permease 1114893 5677729 Clos_1013 Alkaliphilus oremlandii OhILAs cobalt ABC transporter permease YP_001512556.1 1114213 D 350688 CDS YP_001512557.1 158320050 5677730 1114894..1115682 1 NC_009922.1 KEGG: cdf:CD0327 cobalt ABC transporter, ATP-binding protein; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; cobalt ABC transporter ATPase 1115682 5677730 Clos_1014 Alkaliphilus oremlandii OhILAs cobalt ABC transporter ATPase YP_001512557.1 1114894 D 350688 CDS YP_001512558.1 158320051 5677731 1115696..1116316 1 NC_009922.1 PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: tde:TDE2555 precorrin-8X methylmutase; precorrin-8X methylmutase 1116316 5677731 Clos_1015 Alkaliphilus oremlandii OhILAs precorrin-8X methylmutase YP_001512558.1 1115696 D 350688 CDS YP_001512559.1 158320052 5677732 1116316..1117389 1 NC_009922.1 Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 1117389 cbiD 5677732 cbiD Alkaliphilus oremlandii OhILAs cobalt-precorrin-6A synthase YP_001512559.1 1116316 D 350688 CDS YP_001512560.1 158320053 5677733 1117386..1117979 1 NC_009922.1 TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: tde:TDE2373 precorrin-6Y C5,15-methyltransferase, putative; precorrin-6y C5,15-methyltransferase subunit CbiE 1117979 5677733 Clos_1017 Alkaliphilus oremlandii OhILAs precorrin-6y C5,15-methyltransferase subunit CbiE YP_001512560.1 1117386 D 350688 CDS YP_001512561.1 158320054 5677734 1117966..1118520 1 NC_009922.1 TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; KEGG: tde:TDE2374 precorrin-8W decarboxylase, putative; precorrin-6Y C5,15-methyltransferase subunit CbiT 1118520 5677734 Clos_1018 Alkaliphilus oremlandii OhILAs precorrin-6Y C5,15-methyltransferase subunit CbiT YP_001512561.1 1117966 D 350688 CDS YP_001512562.1 158320055 5677735 1118513..1119268 1 NC_009922.1 KEGG: cpr:CPR_1236 precorrin-4 C11-methyltransferase; TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; precorrin-4 C(11)-methyltransferase 1119268 5677735 Clos_1019 Alkaliphilus oremlandii OhILAs precorrin-4 C(11)-methyltransferase YP_001512562.1 1118513 D 350688 CDS YP_001512563.1 158320056 5677745 1119265..1120287 1 NC_009922.1 catalyzes the formation of cobalt-precorrin 4 from cobalt-precorrin 3; cobalamin biosynthesis protein CbiG 1120287 5677745 Clos_1020 Alkaliphilus oremlandii OhILAs cobalamin biosynthesis protein CbiG YP_001512563.1 1119265 D 350688 CDS YP_001512564.1 158320057 5677746 1120280..1121002 1 NC_009922.1 TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: tde:TDE0623 precorrin-3B C17-methyltransferase; precorrin-3B C(17)-methyltransferase 1121002 5677746 Clos_1021 Alkaliphilus oremlandii OhILAs precorrin-3B C(17)-methyltransferase YP_001512564.1 1120280 D 350688 CDS YP_001512565.1 158320058 5677747 1120999..1121739 1 NC_009922.1 TIGRFAM: precorrin-6x reductase; PFAM: Precorrin-6x reductase CbiJ/CobK; KEGG: tde:TDE0624 precorrin-6X reductase, putative; precorrin-6x reductase 1121739 5677747 Clos_1022 Alkaliphilus oremlandii OhILAs precorrin-6x reductase YP_001512565.1 1120999 D 350688 CDS YP_001512566.1 158320059 5677748 1121739..1122392 1 NC_009922.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: tde:TDE2657 precorrin-2 C20-methyltransferase, putative; uroporphyrin-III C/tetrapyrrole methyltransferase 1122392 5677748 Clos_1023 Alkaliphilus oremlandii OhILAs uroporphyrin-III C/tetrapyrrole methyltransferase YP_001512566.1 1121739 D 350688 CDS YP_001512567.1 158320060 5677749 1122584..1123174 1 NC_009922.1 PFAM: Chromate transporter; KEGG: ctc:CTC00660 chromate transport protein; chromate transporter 1123174 5677749 Clos_1024 Alkaliphilus oremlandii OhILAs chromate transporter YP_001512567.1 1122584 D 350688 CDS YP_001512568.1 158320061 5677750 1123158..1123688 1 NC_009922.1 PFAM: Chromate transporter; KEGG: cbo:CBO0533 probable chromate transport protein; chromate transporter 1123688 5677750 Clos_1025 Alkaliphilus oremlandii OhILAs chromate transporter YP_001512568.1 1123158 D 350688 CDS YP_001512569.1 158320062 5677751 1123721..1124614 1 NC_009922.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cno:NT01CX_0182 transcriptional regulator, LysR family; LysR family transcriptional regulator 1124614 5677751 Clos_1026 Alkaliphilus oremlandii OhILAs LysR family transcriptional regulator YP_001512569.1 1123721 D 350688 CDS YP_001512570.1 158320063 5677752 1124712..1125410 1 NC_009922.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: amt:Amet_4711 protein of unknown function DUF395, YeeE/YedE; hypothetical protein 1125410 5677752 Clos_1027 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512570.1 1124712 D 350688 CDS YP_001512571.1 158320064 5677753 1125437..1125664 1 NC_009922.1 PFAM: SirA family protein; KEGG: amt:Amet_4710 SirA family protein; SirA family protein 1125664 5677753 Clos_1028 Alkaliphilus oremlandii OhILAs SirA family protein YP_001512571.1 1125437 D 350688 CDS YP_001512572.1 158320065 5677979 1125682..1126200 1 NC_009922.1 PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: amt:Amet_4709 protein of unknown function DUF395, YeeE/YedE; hypothetical protein 1126200 5677979 Clos_1029 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512572.1 1125682 D 350688 CDS YP_001512573.1 158320066 5677980 complement(1126362..1127252) 1 NC_009922.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: amt:Amet_4708 transcriptional regulator, LysR family; LysR family transcriptional regulator 1127252 5677980 Clos_1030 Alkaliphilus oremlandii OhILAs LysR family transcriptional regulator YP_001512573.1 1126362 R 350688 CDS YP_001512574.1 158320067 5677981 1127575..1128246 1 NC_009922.1 KEGG: dsy:DSY2099 hypothetical protein; Contains selenocysteine; hypothetical protein 1128246 5677981 Clos_1031 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512574.1 1127575 D 350688 CDS YP_001512575.1 158320068 5677982 1128527..1129192 1 NC_009922.1 KEGG: dde:Dde_3211 split soret cytochrome c precursor; Contains selenocysteine; split soret cytochrome c precursor 1129192 5677982 Clos_1032 Alkaliphilus oremlandii OhILAs split soret cytochrome c precursor YP_001512575.1 1128527 D 350688 CDS YP_001512576.1 158320069 5677983 1129455..1129751 1 NC_009922.1 KEGG: drm:Dred_3221 hypothetical protein; hypothetical protein 1129751 5677983 Clos_1033 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512576.1 1129455 D 350688 CDS YP_001512577.1 158320070 5677984 1129937..1132156 1 NC_009922.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 1132156 5677984 Clos_1034 Alkaliphilus oremlandii OhILAs DNA topoisomerase III YP_001512577.1 1129937 D 350688 CDS YP_001512578.1 158320071 5677985 1132348..1132722 1 NC_009922.1 PFAM: regulatory protein MarR; KEGG: ctc:CTC02048 transcriptional regulator, MarR family; MarR family transcriptional regulator 1132722 5677985 Clos_1035 Alkaliphilus oremlandii OhILAs MarR family transcriptional regulator YP_001512578.1 1132348 D 350688 CDS YP_001512579.1 158320072 5677986 1132868..1133221 1 NC_009922.1 TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: cbo:CBO1825 decarboxylase; alkylhydroperoxidase 1133221 5677986 Clos_1036 Alkaliphilus oremlandii OhILAs alkylhydroperoxidase YP_001512579.1 1132868 D 350688 CDS YP_001512580.1 158320073 5677987 1133292..1135010 1 NC_009922.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: ctc:CTC02047 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 1135010 5677987 Clos_1037 Alkaliphilus oremlandii OhILAs dihydrolipoamide dehydrogenase YP_001512580.1 1133292 D 350688 CDS YP_001512581.1 158320074 5677809 1135319..1136176 1 NC_009922.1 PFAM: PP-loop domain protein; KEGG: cbo:CBO0341 hypothetical protein; PP-loop domain-containing protein 1136176 5677809 Clos_1038 Alkaliphilus oremlandii OhILAs PP-loop domain-containing protein YP_001512581.1 1135319 D 350688 CDS YP_001512582.1 158320075 5677810 1136206..1139463 1 NC_009922.1 KEGG: cth:Cthe_2451 SNF2-related protein; PFAM: SNF2-related protein; helicase domain protein; zinc finger SWIM domain protein; SNF2 helicase associated domain protein; SMART: DEAD-like helicases; non-specific serine/threonine protein kinase 1139463 5677810 Clos_1039 Alkaliphilus oremlandii OhILAs non-specific serine/threonine protein kinase YP_001512582.1 1136206 D 350688 CDS YP_001512583.1 158320076 5677811 1139567..1141384 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: tte:TTE2194 indolepyruvate ferredoxin oxidoreductase, alpha subunit; indolepyruvate ferredoxin oxidoreductase 1141384 5677811 Clos_1040 Alkaliphilus oremlandii OhILAs indolepyruvate ferredoxin oxidoreductase YP_001512583.1 1139567 D 350688 CDS YP_001512584.1 158320077 5677812 1141374..1141946 1 NC_009922.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: tte:TTE2193 indolepyruvate ferredoxin oxidoreductase, beta subunit; pyruvate ferredoxin/flavodoxin oxidoreductase 1141946 5677812 Clos_1041 Alkaliphilus oremlandii OhILAs pyruvate ferredoxin/flavodoxin oxidoreductase YP_001512584.1 1141374 D 350688 CDS YP_001512585.1 158320078 5677813 1142360..1142779 1 NC_009922.1 PFAM: PspC domain protein; KEGG: tte:TTE0864 putative stress-responsive transcriptional regulator; phage shock protein C, PspC 1142779 5677813 Clos_1042 Alkaliphilus oremlandii OhILAs phage shock protein C, PspC YP_001512585.1 1142360 D 350688 CDS YP_001512586.1 158320079 5677814 1142813..1143700 1 NC_009922.1 KEGG: cth:Cthe_0073 hypothetical protein; hypothetical protein 1143700 5677814 Clos_1043 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512586.1 1142813 D 350688 CDS YP_001512587.1 158320080 5677815 1143892..1144422 1 NC_009922.1 KEGG: bcl:ABC3948 hypothetical protein; hypothetical protein 1144422 5677815 Clos_1044 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512587.1 1143892 D 350688 CDS YP_001512588.1 158320081 5677816 1144515..1145942 1 NC_009922.1 PFAM: band 7 protein; KEGG: gtn:GTNG_0296 flottilin; hypothetical protein 1145942 5677816 Clos_1045 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512588.1 1144515 D 350688 CDS YP_001512589.1 158320082 5678286 complement(1146493..1147602) 1 NC_009922.1 PFAM: integrase family protein; KEGG: cth:Cthe_2455 phage integrase; integrase family protein 1147602 5678286 Clos_1046 Alkaliphilus oremlandii OhILAs integrase family protein YP_001512589.1 1146493 R 350688 CDS YP_001512590.1 158320083 5678287 complement(1147747..1148340) 1 NC_009922.1 PFAM: protein of unknown function DUF955; KEGG: drm:Dred_0915 protein of unknown function DUF955; hypothetical protein 1148340 5678287 Clos_1047 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512590.1 1147747 R 350688 CDS YP_001512591.1 158320084 5678288 complement(1148361..1148708) 1 NC_009922.1 PFAM: helix-turn-helix domain protein; KEGG: drm:Dred_0916 transcriptional regulator, XRE family; XRE family transcriptional regulator 1148708 5678288 Clos_1048 Alkaliphilus oremlandii OhILAs XRE family transcriptional regulator YP_001512591.1 1148361 R 350688 CDS YP_001512592.1 158320085 5678289 1148929..1149153 1 NC_009922.1 PFAM: helix-turn-helix domain protein; KEGG: chy:CHY_1696 prophage LambdaCh01, transcriptional regulator, PBSX family; XRE family transcriptional regulator 1149153 5678289 Clos_1049 Alkaliphilus oremlandii OhILAs XRE family transcriptional regulator YP_001512592.1 1148929 D 350688 CDS YP_001512593.1 158320086 5678290 1149189..1149443 1 NC_009922.1 hypothetical protein 1149443 5678290 Clos_1050 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512593.1 1149189 D 350688 CDS YP_001512594.1 158320087 5678291 1149564..1149860 1 NC_009922.1 TIGRFAM: DNA binding domain, excisionase family; KEGG: cth:Cthe_2463 DNA binding domain, excisionase family; DNA binding domain-containing protein 1149860 5678291 Clos_1051 Alkaliphilus oremlandii OhILAs DNA binding domain-containing protein YP_001512594.1 1149564 D 350688 CDS YP_001512595.1 158320088 5678292 1149862..1150185 1 NC_009922.1 hypothetical protein 1150185 5678292 Clos_1052 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512595.1 1149862 D 350688 CDS YP_001512596.1 158320089 5678293 1150205..1150966 1 NC_009922.1 KEGG: saj:SaurJH9_2038 primosome, DnaD subunit; hypothetical protein 1150966 5678293 Clos_1053 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512596.1 1150205 D 350688 CDS YP_001512597.1 158320090 5676184 1150935..1151648 1 NC_009922.1 KEGG: cbo:CBO2310 hypothetical protein; hypothetical protein 1151648 5676184 Clos_1054 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512597.1 1150935 D 350688 CDS YP_001512598.1 158320091 5676185 1152197..1152451 1 NC_009922.1 KEGG: mta:Moth_1976 hypothetical protein; hypothetical protein 1152451 5676185 Clos_1055 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512598.1 1152197 D 350688 CDS YP_001512599.1 158320092 5676186 1152770..1154473 1 NC_009922.1 PFAM: chemotaxis sensory transducer; KEGG: bcz:BCZK1024 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 1154473 5676186 Clos_1056 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer YP_001512599.1 1152770 D 350688 CDS YP_001512600.1 158320093 5676187 1154669..1155514 1 NC_009922.1 PFAM: prolipoprotein diacylglyceryl transferase; KEGG: mta:Moth_1993 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 1155514 5676187 Clos_1057 Alkaliphilus oremlandii OhILAs prolipoprotein diacylglyceryl transferase YP_001512600.1 1154669 D 350688 CDS YP_001512601.1 158320094 5676188 1155539..1157815 1 NC_009922.1 KEGG: csc:Csac_0410 spermine synthase; spermine synthase 1157815 5676188 Clos_1058 Alkaliphilus oremlandii OhILAs spermine synthase YP_001512601.1 1155539 D 350688 CDS YP_001512602.1 158320095 5676189 1157854..1158075 1 NC_009922.1 hypothetical protein 1158075 5676189 Clos_1059 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512602.1 1157854 D 350688 CDS YP_001512603.1 158320096 5676190 1158295..1158723 1 NC_009922.1 PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: cbo:CBO3053 sigma-E factor regulatory protein; sigma E positive regulator RseC/MucC 1158723 5676190 Clos_1060 Alkaliphilus oremlandii OhILAs sigma E positive regulator RseC/MucC YP_001512603.1 1158295 D 350688 CDS YP_001512604.1 158320097 5676191 1158774..1159367 1 NC_009922.1 KEGG: csc:Csac_0412 hypothetical protein; hypothetical protein 1159367 5676191 Clos_1061 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512604.1 1158774 D 350688 CDS YP_001512605.1 158320098 5676192 1159518..1160774 1 NC_009922.1 KEGG: shn:Shewana3_4140 hypothetical protein; hypothetical protein 1160774 5676192 Clos_1062 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512605.1 1159518 D 350688 CDS YP_001512606.1 158320099 5676792 1161192..1161893 1 NC_009922.1 TIGRFAM: integral membrane protein TIGR01906; PFAM: Integral membrane protein 1906; KEGG: tte:TTE1993 hypothetical protein; hypothetical protein 1161893 5676792 Clos_1063 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512606.1 1161192 D 350688 CDS YP_001512607.1 158320100 5676793 1162067..1163071 1 NC_009922.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: mba:Mbar_A3143 cell surface protein; hypothetical protein 1163071 5676793 Clos_1064 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512607.1 1162067 D 350688 CDS YP_001512608.1 158320101 5676794 1163174..1163476 1 NC_009922.1 PFAM: protein of unknown function DUF156; KEGG: drm:Dred_2141 protein of unknown function DUF156; hypothetical protein 1163476 5676794 Clos_1065 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512608.1 1163174 D 350688 CDS YP_001512609.1 158320102 5676795 1163493..1165940 1 NC_009922.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY4510 hypothetical protein; heavy metal translocating P-type ATPase 1165940 5676795 Clos_1066 Alkaliphilus oremlandii OhILAs heavy metal translocating P-type ATPase YP_001512609.1 1163493 D 350688 CDS YP_001512610.1 158320103 5676796 1166026..1166241 1 NC_009922.1 PFAM: Heavy metal transport/detoxification protein; KEGG: dsy:DSY4509 hypothetical protein; heavy metal transport/detoxification protein 1166241 5676796 Clos_1067 Alkaliphilus oremlandii OhILAs heavy metal transport/detoxification protein YP_001512610.1 1166026 D 350688 CDS YP_001512611.1 158320104 5676797 1166761..1167012 1 NC_009922.1 hypothetical protein 1167012 5676797 Clos_1068 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512611.1 1166761 D 350688 CDS YP_001512612.1 158320105 5676798 complement(1167311..1168339) 1 NC_009922.1 PFAM: putative cell wall binding repeat 2-containing protein; KEGG: bld:BLi01150 hypothetical protein; cell wall binding repeat 2-containing protein 1168339 5676798 Clos_1069 Alkaliphilus oremlandii OhILAs cell wall binding repeat 2-containing protein YP_001512612.1 1167311 R 350688 CDS YP_001512613.1 158320106 5676799 1168835..1169488 1 NC_009922.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: hypothetical protein; isoprenylcysteine carboxyl methyltransferase 1169488 5676799 Clos_1070 Alkaliphilus oremlandii OhILAs isoprenylcysteine carboxyl methyltransferase YP_001512613.1 1168835 D 350688 CDS YP_001512614.1 158320107 5676800 1169603..1170061 1 NC_009922.1 hypothetical protein 1170061 5676800 Clos_1071 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512614.1 1169603 D 350688 CDS YP_001512615.1 158320108 5676318 1170191..1170892 1 NC_009922.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: hiq:CGSHiGG_01145 conserved hypothetical cytochrome c-type biogenesis protein; cytochrome c biogenesis protein transmembrane region 1170892 5676318 Clos_1072 Alkaliphilus oremlandii OhILAs cytochrome c biogenesis protein transmembrane region YP_001512615.1 1170191 D 350688 CDS YP_001512616.1 158320109 5676319 complement(1170971..1171885) 1 NC_009922.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cbo:CBO0724 cysteine synthase; pyridoxal-5'-phosphate-dependent protein beta subunit 1171885 5676319 Clos_1073 Alkaliphilus oremlandii OhILAs pyridoxal-5'-phosphate-dependent protein beta subunit YP_001512616.1 1170971 R 350688 CDS YP_001512617.1 158320110 5676320 complement(1171923..1173047) 1 NC_009922.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: gka:GK2540 cystathionine gamma-synthase; cystathionine gamma-synthase 1173047 5676320 Clos_1074 Alkaliphilus oremlandii OhILAs cystathionine gamma-synthase YP_001512617.1 1171923 R 350688 CDS YP_001512618.1 158320111 5676321 complement(1173077..1173535) 1 NC_009922.1 PFAM: LuxS protein; KEGG: cbo:CBO0725 S-ribosylhomocysteinase; quorum-sensing autoinducer 2 (AI-2), LuxS 1173535 5676321 Clos_1075 Alkaliphilus oremlandii OhILAs quorum-sensing autoinducer 2 (AI-2), LuxS YP_001512618.1 1173077 R 350688 CDS YP_001512619.1 158320112 5676322 complement(1173536..1174186) 1 NC_009922.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: oih:OB1106 hypothetical protein; methyltransferase type 12 1174186 5676322 Clos_1076 Alkaliphilus oremlandii OhILAs methyltransferase type 12 YP_001512619.1 1173536 R 350688 CDS YP_001512620.1 158320113 5676323 1174602..1174853 1 NC_009922.1 KEGG: ctc:CTC00666 hypothetical protein; hypothetical protein 1174853 5676323 Clos_1077 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512620.1 1174602 D 350688 CDS YP_001512621.1 158320114 5676324 1174858..1176255 1 NC_009922.1 TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gur:Gura_2679 multi-sensor signal transduction histidine kinase; multi-sensor signal transduction histidine kinase 1176255 5676324 Clos_1078 Alkaliphilus oremlandii OhILAs multi-sensor signal transduction histidine kinase YP_001512621.1 1174858 D 350688 CDS YP_001512622.1 158320115 5676325 1176248..1177603 1 NC_009922.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: drm:Dred_2001 two component, sigma54 specific, transcriptional regulator, fis family; two component, sigma54 specific, Fis family transcriptional regulator 1177603 5676325 Clos_1079 Alkaliphilus oremlandii OhILAs two component, sigma54 specific, Fis family transcriptional regulator YP_001512622.1 1176248 D 350688 CDS YP_001512623.1 158320116 5676326 1178111..1178728 1 NC_009922.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: csc:Csac_0414 methyltransferase type 11; methyltransferase type 11 1178728 5676326 Clos_1080 Alkaliphilus oremlandii OhILAs methyltransferase type 11 YP_001512623.1 1178111 D 350688 CDS YP_001512624.1 158320117 5676848 complement(1178966..1179748) 1 NC_009922.1 PFAM: zinc/iron permease; KEGG: ctc:CTC01320 GufA protein; zinc/iron permease 1179748 5676848 Clos_1081 Alkaliphilus oremlandii OhILAs zinc/iron permease YP_001512624.1 1178966 R 350688 CDS YP_001512625.1 158320118 5676850 1180452..1180916 1 NC_009922.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1180916 5676850 Clos_1083 Alkaliphilus oremlandii OhILAs lipoprotein signal peptidase YP_001512625.1 1180452 D 350688 CDS YP_001512626.1 158320119 5676851 1180919..1181575 1 NC_009922.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ajs:Ajs_2683 methyltransferase type 11; methyltransferase type 11 1181575 5676851 Clos_1084 Alkaliphilus oremlandii OhILAs methyltransferase type 11 YP_001512626.1 1180919 D 350688 CDS YP_001512627.1 158320120 5676852 1181647..1182015 1 NC_009922.1 PFAM: regulatory protein ArsR; KEGG: cth:Cthe_0245 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 1182015 5676852 Clos_1085 Alkaliphilus oremlandii OhILAs ArsR family transcriptional regulator YP_001512627.1 1181647 D 350688 CDS YP_001512628.1 158320121 5676853 1182037..1182411 1 NC_009922.1 PFAM: regulatory protein ArsR; KEGG: cpr:CPR_2290 transcription repressor smtb-like protein PAB0625; ArsR family transcriptional regulator 1182411 5676853 Clos_1086 Alkaliphilus oremlandii OhILAs ArsR family transcriptional regulator YP_001512628.1 1182037 D 350688 CDS YP_001512629.1 158320122 5676854 1182443..1185043 1 NC_009922.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: csc:Csac_0477 heavy metal translocating P-type ATPase; heavy metal translocating P-type ATPase 1185043 5676854 Clos_1087 Alkaliphilus oremlandii OhILAs heavy metal translocating P-type ATPase YP_001512629.1 1182443 D 350688 CDS YP_001512630.1 158320123 5676855 1185568..1185924 1 NC_009922.1 PFAM: BFD domain protein [2Fe-2S]-binding domain protein; KEGG: csc:Csac_0668 hypothetical protein; BFD/(2Fe-2S)-binding domain-containing protein 1185924 5676855 Clos_1088 Alkaliphilus oremlandii OhILAs BFD/(2Fe-2S)-binding domain-containing protein YP_001512630.1 1185568 D 350688 CDS YP_001512631.1 158320124 5676856 complement(1185989..1186258) 1 NC_009922.1 KEGG: gfo:GFO_1320 hypothetical protein; hypothetical protein 1186258 5676856 Clos_1089 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512631.1 1185989 R 350688 CDS YP_001512632.1 158320125 5676086 complement(1186243..1186674) 1 NC_009922.1 PFAM: regulatory protein MerR; Transcription regulator MerR DNA binding; KEGG: sep:SE0081 hypothetical protein; MerR family transcriptional regulator 1186674 5676086 Clos_1090 Alkaliphilus oremlandii OhILAs MerR family transcriptional regulator YP_001512632.1 1186243 R 350688 CDS YP_001512633.1 158320126 5676087 complement(1186762..1187574) 1 NC_009922.1 PFAM: ABC-2 type transporter; KEGG: sen:SACE_0206 ABC-2 type transporter; ABC-2 type transporter 1187574 5676087 Clos_1091 Alkaliphilus oremlandii OhILAs ABC-2 type transporter YP_001512633.1 1186762 R 350688 CDS YP_001512634.1 158320127 5676088 complement(1187558..1188529) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM1403 putative antibiotic transport system ATP-binding protein; ABC transporter 1188529 5676088 Clos_1092 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512634.1 1187558 R 350688 CDS YP_001512635.1 158320128 5676089 1190665..1191222 1 NC_009922.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor SigZ 1191222 5676089 Clos_1093 Alkaliphilus oremlandii OhILAs RNA polymerase sigma factor SigZ YP_001512635.1 1190665 D 350688 CDS YP_001512636.1 158320129 5676090 1191310..1192101 1 NC_009922.1 in Rhodopseudomonas palustris this protein confers resistance to arsenite; catalyzes the formation of a number of methylated intermediates from arsenite and SAM producing trimethylarsine; arsenite S-adenosylmethyltransferase 1192101 arsM 5676090 arsM Alkaliphilus oremlandii OhILAs arsenite S-adenosylmethyltransferase YP_001512636.1 1191310 D 350688 CDS YP_001512637.1 158320130 5676091 1192592..1193185 1 NC_009922.1 KEGG: gur:Gura_3370 formate dehydrogenase family accessory protein FdhD; formate dehydrogenase family accessory protein FdhD 1193185 5676091 Clos_1095 Alkaliphilus oremlandii OhILAs formate dehydrogenase family accessory protein FdhD YP_001512637.1 1192592 D 350688 CDS YP_001512638.1 158320131 5676092 1193519..1196071 1 NC_009922.1 PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dsy:DSY4131 putative anaerobic dehydrogenase; molybdopterin oxidoreductase 1196071 5676092 Clos_1096 Alkaliphilus oremlandii OhILAs molybdopterin oxidoreductase YP_001512638.1 1193519 D 350688 CDS YP_001512639.1 158320132 5676093 1196102..1196782 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dsy:DSY4132 putative oxidoreductase iron-sulfur subunit; 4Fe-4S ferredoxin 1196782 5676093 Clos_1097 Alkaliphilus oremlandii OhILAs 4Fe-4S ferredoxin YP_001512639.1 1196102 D 350688 CDS YP_001512640.1 158320133 5676094 1196879..1197547 1 NC_009922.1 PFAM: cytoplasmic chaperone TorD family protein; KEGG: gur:Gura_0472 cytoplasmic chaperone TorD family protein; cytoplasmic chaperone TorD family protein 1197547 5676094 Clos_1098 Alkaliphilus oremlandii OhILAs cytoplasmic chaperone TorD family protein YP_001512640.1 1196879 D 350688 CDS YP_001512641.1 158320134 5676157 1197615..1198709 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: chy:CHY_0869 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin 1198709 5676157 Clos_1099 Alkaliphilus oremlandii OhILAs 4Fe-4S ferredoxin YP_001512641.1 1197615 D 350688 CDS YP_001512642.1 158320135 5676158 1198777..1199208 1 NC_009922.1 PFAM: MOSC domain containing protein; KEGG: cbo:CBO1938 molybdenum cofactor sulfurase; MOSC domain-containing protein 1199208 5676158 Clos_1100 Alkaliphilus oremlandii OhILAs MOSC domain-containing protein YP_001512642.1 1198777 D 350688 CDS YP_001512643.1 158320136 5676159 1199296..1199490 1 NC_009922.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 1199490 tatA 5676159 tatA Alkaliphilus oremlandii OhILAs twin arginine translocase protein A YP_001512643.1 1199296 D 350688 CDS YP_001512644.1 158320137 5676160 1199551..1200573 1 NC_009922.1 PFAM: molybdopterin binding domain; KEGG: chy:CHY_0621 molybdopterin-binding domain protein; molybdopterin binding domain-containing protein 1200573 5676160 Clos_1102 Alkaliphilus oremlandii OhILAs molybdopterin binding domain-containing protein YP_001512644.1 1199551 D 350688 CDS YP_001512645.1 158320138 5676161 1200584..1201816 1 NC_009922.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: chy:CHY_0867 putative molybdopterin biosynthesis MoeA protein; molybdenum cofactor synthesis domain-containing protein 1201816 5676161 Clos_1103 Alkaliphilus oremlandii OhILAs molybdenum cofactor synthesis domain-containing protein YP_001512645.1 1200584 D 350688 CDS YP_001512646.1 158320139 5676162 1201816..1202307 1 NC_009922.1 TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; KEGG: mta:Moth_1819 molybdopterin-guanine dinucleotide biosynthesis protein B; molybdopterin-guanine dinucleotide biosynthesis protein B 1202307 5676162 Clos_1104 Alkaliphilus oremlandii OhILAs molybdopterin-guanine dinucleotide biosynthesis protein B YP_001512646.1 1201816 D 350688 CDS YP_001512647.1 158320140 5676163 1202558..1203274 1 NC_009922.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: tpt:Tpet_0921 phosphodiesterase, MJ0936 family; phosphodiesterase 1203274 5676163 Clos_1105 Alkaliphilus oremlandii OhILAs phosphodiesterase YP_001512647.1 1202558 D 350688 CDS YP_001512648.1 158320141 5676164 1203411..1203746 1 NC_009922.1 PFAM: regulatory protein ArsR; transcriptional regulator TrmB; KEGG: ssp:SSP1604 putative transcriptional regulator; transcriptional regulator TrmB 1203746 5676164 Clos_1106 Alkaliphilus oremlandii OhILAs transcriptional regulator TrmB YP_001512648.1 1203411 D 350688 CDS YP_001512649.1 158320142 5676165 1203915..1204202 1 NC_009922.1 PFAM: regulatory protein ArsR; KEGG: swo:Swol_0936 regulator of arsenical resistance; ArsR family transcriptional regulator 1204202 5676165 Clos_1107 Alkaliphilus oremlandii OhILAs ArsR family transcriptional regulator YP_001512649.1 1203915 D 350688 CDS YP_001512650.1 158320143 5676810 1204226..1205491 1 NC_009922.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: tko:TK1064 predicted metallocofactor modifying protein, radical SAM superfamily; radical SAM domain-containing protein 1205491 5676810 Clos_1108 Alkaliphilus oremlandii OhILAs radical SAM domain-containing protein YP_001512650.1 1204226 D 350688 CDS YP_001512651.1 158320144 5676811 1205669..1206043 1 NC_009922.1 PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: cbo:CBO0754 arsenical resistance operon trans-acting repressor; arsenical resistance operon trans-acting repressor ArsD 1206043 5676811 Clos_1109 Alkaliphilus oremlandii OhILAs arsenical resistance operon trans-acting repressor ArsD YP_001512651.1 1205669 D 350688 CDS YP_001512652.1 158320145 5676812 1206067..1207815 1 NC_009922.1 KEGG: cbo:CBO0755 arsenical pump-driving ATPase; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase; SMART: AAA ATPase; arsenite-activated ATPase ArsA 1207815 5676812 Clos_1110 Alkaliphilus oremlandii OhILAs arsenite-activated ATPase ArsA YP_001512652.1 1206067 D 350688 CDS YP_001512653.1 158320146 5676813 1208029..1208250 1 NC_009922.1 hypothetical protein 1208250 5676813 Clos_1111 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512653.1 1208029 D 350688 CDS YP_001512654.1 158320147 5676814 1208400..1208771 1 NC_009922.1 PFAM: regulatory protein ArsR; KEGG: cbo:CBO0753 arsenical resistance operon repressor; ArsR family transcriptional regulator 1208771 5676814 Clos_1112 Alkaliphilus oremlandii OhILAs ArsR family transcriptional regulator YP_001512654.1 1208400 D 350688 CDS YP_001512655.1 158320148 5676815 1209084..1209485 1 NC_009922.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cth:Cthe_1110 protein tyrosine phosphatase; protein tyrosine phosphatase 1209485 5676815 Clos_1113 Alkaliphilus oremlandii OhILAs protein tyrosine phosphatase YP_001512655.1 1209084 D 350688 CDS YP_001512656.1 158320149 5676816 1209550..1210623 1 NC_009922.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: cth:Cthe_1111 bile acid:sodium symporter; arsenical-resistance protein 1210623 5676816 Clos_1114 Alkaliphilus oremlandii OhILAs arsenical-resistance protein YP_001512656.1 1209550 D 350688 CDS YP_001512657.1 158320150 5676817 1210813..1211223 1 NC_009922.1 SMART: Rhodanese domain protein; KEGG: cte:CT0514 hypothetical protein; rhodanese domain-containing protein 1211223 5676817 Clos_1115 Alkaliphilus oremlandii OhILAs rhodanese domain-containing protein YP_001512657.1 1210813 D 350688 CDS YP_001512658.1 158320151 5676818 1211738..1212697 1 NC_009922.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: gtn:GTNG_2397 phosphate-binding protein; phosphate binding protein 1212697 5676818 Clos_1116 Alkaliphilus oremlandii OhILAs phosphate binding protein YP_001512658.1 1211738 D 350688 CDS YP_001512659.1 158320152 5678714 1212835..1213737 1 NC_009922.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nph:NP1980A ABC-type transport system permease protein II (probable substrate phosphate) 1; phosphate ABC transporter, inner membrane subunit PstC 1213737 5678714 Clos_1117 Alkaliphilus oremlandii OhILAs phosphate ABC transporter, inner membrane subunit PstC YP_001512659.1 1212835 D 350688 CDS YP_001512660.1 158320153 5678715 1213737..1214636 1 NC_009922.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sru:SRU_2295 phosphate ABC transporter, permease protein PstA; phosphate ABC transporter, inner membrane subunit PstA 1214636 5678715 Clos_1118 Alkaliphilus oremlandii OhILAs phosphate ABC transporter, inner membrane subunit PstA YP_001512660.1 1213737 D 350688 CDS YP_001512661.1 158320154 5678716 1214662..1215417 1 NC_009922.1 KEGG: cbo:CBO2522 phosphate import ATP-binding protein; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; phosphate ABC transporter ATPase 1215417 5678716 Clos_1119 Alkaliphilus oremlandii OhILAs phosphate ABC transporter ATPase YP_001512661.1 1214662 D 350688 CDS YP_001512662.1 158320155 5678717 1215437..1216087 1 NC_009922.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: tte:TTE1627 phosphate uptake regulator; phosphate uptake regulator PhoU 1216087 5678717 Clos_1120 Alkaliphilus oremlandii OhILAs phosphate uptake regulator PhoU YP_001512662.1 1215437 D 350688 CDS YP_001512663.1 158320156 5678718 1216129..1216506 1 NC_009922.1 PFAM: regulatory protein ArsR; KEGG: ssp:SSP1604 putative transcriptional regulator; ArsR family transcriptional regulator 1216506 5678718 Clos_1121 Alkaliphilus oremlandii OhILAs ArsR family transcriptional regulator YP_001512663.1 1216129 D 350688 CDS YP_001512664.1 158320157 5678719 1216542..1217273 1 NC_009922.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: tpt:Tpet_0921 phosphodiesterase, MJ0936 family; phosphodiesterase 1217273 5678719 Clos_1122 Alkaliphilus oremlandii OhILAs phosphodiesterase YP_001512664.1 1216542 D 350688 CDS YP_001512665.1 158320158 5678720 1217575..1218579 1 NC_009922.1 PFAM: permease; KEGG: dsy:DSY4678 hypothetical protein; permease 1218579 5678720 Clos_1123 Alkaliphilus oremlandii OhILAs permease YP_001512665.1 1217575 D 350688 CDS YP_001512666.1 158320159 5678721 1218696..1218929 1 NC_009922.1 TIGRFAM: redox-active disulfide protein 2; KEGG: dsy:DSY4674 hypothetical protein; redox-active disulfide protein 2 1218929 5678721 Clos_1124 Alkaliphilus oremlandii OhILAs redox-active disulfide protein 2 YP_001512666.1 1218696 D 350688 CDS YP_001512667.1 158320160 5678722 complement(1218975..1219310) 1 NC_009922.1 hypothetical protein 1219310 5678722 Clos_1125 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512667.1 1218975 R 350688 CDS YP_001512668.1 158320161 5677710 complement(1219310..1219744) 1 NC_009922.1 hypothetical protein 1219744 5677710 Clos_1126 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512668.1 1219310 R 350688 CDS YP_001512669.1 158320162 5677711 complement(1219920..1220144) 1 NC_009922.1 KEGG: pth:PTH_0422 hypothetical protein; hypothetical protein 1220144 5677711 Clos_1127 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512669.1 1219920 R 350688 CDS YP_001512670.1 158320163 5677712 complement(1220185..1220442) 1 NC_009922.1 hypothetical protein 1220442 5677712 Clos_1128 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512670.1 1220185 R 350688 CDS YP_001512671.1 158320164 5677713 complement(1220491..1220904) 1 NC_009922.1 KEGG: drm:Dred_0505 hypothetical protein; hypothetical protein 1220904 5677713 Clos_1129 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512671.1 1220491 R 350688 CDS YP_001512672.1 158320165 5677714 complement(1221056..1221418) 1 NC_009922.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: drm:Dred_0511 peptidase M15A; peptidase M15A 1221418 5677714 Clos_1130 Alkaliphilus oremlandii OhILAs peptidase M15A YP_001512672.1 1221056 R 350688 CDS YP_001512673.1 158320166 5677715 1221665..1222651 1 NC_009922.1 KEGG: cpf:CPF_2597 hypothetical protein; hypothetical protein 1222651 5677715 Clos_1131 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512673.1 1221665 D 350688 CDS YP_001512674.1 158320167 5677716 1225500..1226540 1 NC_009922.1 PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: fnu:FN1258 C4-dicarboxylate-binding protein; TRAP dicarboxylate transporter- DctP subunit 1226540 5677716 Clos_1132 Alkaliphilus oremlandii OhILAs TRAP dicarboxylate transporter- DctP subunit YP_001512674.1 1225500 D 350688 CDS YP_001512675.1 158320168 5677717 1226810..1227298 1 NC_009922.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: fnu:FN1257 C4-dicarboxylate transporter small subunit; tripartite ATP-independent periplasmic transporter DctQ 1227298 5677717 Clos_1133 Alkaliphilus oremlandii OhILAs tripartite ATP-independent periplasmic transporter DctQ YP_001512675.1 1226810 D 350688 CDS YP_001512676.1 158320169 5677718 1227313..1228599 1 NC_009922.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: fnu:FN1256 C4-dicarboxylate transporter large subunit; TRAP dicarboxylate transporter, DctM subunit 1228599 5677718 Clos_1134 Alkaliphilus oremlandii OhILAs TRAP dicarboxylate transporter, DctM subunit YP_001512676.1 1227313 D 350688 CDS YP_001512677.1 158320170 5678760 1228628..1229419 1 NC_009922.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: fnu:FN1255 nagD protein; HAD family hydrolase 1229419 5678760 Clos_1135 Alkaliphilus oremlandii OhILAs HAD family hydrolase YP_001512677.1 1228628 D 350688 CDS YP_001512678.1 158320171 5678761 1229553..1230122 1 NC_009922.1 PFAM: glycerol-3-phosphate responsive antiterminator; KEGG: cno:NT01CX_0613 glycerol uptake operon antiterminator regulatory protein; glycerol-3-phosphate responsive antiterminator GlpP 1230122 5678761 Clos_1136 Alkaliphilus oremlandii OhILAs glycerol-3-phosphate responsive antiterminator GlpP YP_001512678.1 1229553 D 350688 CDS YP_001512679.1 158320172 5678762 1230345..1231775 1 NC_009922.1 PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: fnu:FN0183 glycerol-3-phosphate dehydrogenase; FAD dependent oxidoreductase 1231775 5678762 Clos_1137 Alkaliphilus oremlandii OhILAs FAD dependent oxidoreductase YP_001512679.1 1230345 D 350688 CDS YP_001512680.1 158320173 5678763 1231806..1233071 1 NC_009922.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: fnu:FN0182 sarcosine oxidase alpha subunit; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1233071 5678763 Clos_1138 Alkaliphilus oremlandii OhILAs FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001512680.1 1231806 D 350688 CDS YP_001512681.1 158320174 5678764 1233074..1233487 1 NC_009922.1 PFAM: protein of unknown function DUF1667; KEGG: csc:Csac_0011 protein of unknown function DUF1667; hypothetical protein 1233487 5678764 Clos_1139 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512681.1 1233074 D 350688 CDS YP_001512682.1 158320175 5678765 1233527..1234231 1 NC_009922.1 PFAM: MgtC/SapB transporter; KEGG: cth:Cthe_1919 MgtC/SapB transporter; MgtC/SapB transporter 1234231 5678765 Clos_1140 Alkaliphilus oremlandii OhILAs MgtC/SapB transporter YP_001512682.1 1233527 D 350688 CDS YP_001512683.1 158320176 5678766 complement(1234919..1235449) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cno:NT01CX_0012 acetyltransferase, GNAT family; N-acetyltransferase GCN5 1235449 5678766 Clos_1141 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001512683.1 1234919 R 350688 CDS YP_001512684.1 158320177 5678767 1236771..1237055 1 NC_009922.1 hypothetical protein 1237055 5678767 Clos_1142 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512684.1 1236771 D 350688 CDS YP_001512685.1 158320178 5678768 1237055..1237516 1 NC_009922.1 KEGG: dsy:DSY4205 hypothetical protein; hypothetical protein 1237516 5678768 Clos_1143 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512685.1 1237055 D 350688 CDS YP_001512686.1 158320179 5678582 1237682..1240003 1 NC_009922.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 1240003 5678582 Clos_1144 Alkaliphilus oremlandii OhILAs anaerobic ribonucleoside triphosphate reductase YP_001512686.1 1237682 D 350688 CDS YP_001512687.1 158320180 5678583 1240034..1240549 1 NC_009922.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: dsy:DSY0396 hypothetical protein; anaerobic ribonucleoside-triphosphate reductase activating protein 1240549 5678583 Clos_1145 Alkaliphilus oremlandii OhILAs anaerobic ribonucleoside-triphosphate reductase activating protein YP_001512687.1 1240034 D 350688 CDS YP_001512688.1 158320181 5678584 1240847..1241746 1 NC_009922.1 hypothetical protein 1241746 5678584 Clos_1146 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512688.1 1240847 D 350688 CDS YP_001512689.1 158320182 5678585 1241747..1242130 1 NC_009922.1 hypothetical protein 1242130 5678585 Clos_1147 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512689.1 1241747 D 350688 CDS YP_001512690.1 158320183 5678586 1242350..1243522 1 NC_009922.1 PFAM: sodium/hydrogen exchanger; KEGG: cdf:CD0657 putative Na(+)/H(+) antiporter; sodium/hydrogen exchanger 1243522 5678586 Clos_1148 Alkaliphilus oremlandii OhILAs sodium/hydrogen exchanger YP_001512690.1 1242350 D 350688 CDS YP_001512691.1 158320184 5678587 1243763..1244131 1 NC_009922.1 KEGG: sth:STH2523 conserved domain protein, histidine-rich; hypothetical protein 1244131 5678587 Clos_1149 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512691.1 1243763 D 350688 CDS YP_001512692.1 158320185 5678588 1244204..1244620 1 NC_009922.1 PFAM: NUDIX hydrolase; KEGG: cac:CAC1006 MutT-like (NUDIX) hydrolase; NUDIX hydrolase 1244620 5678588 Clos_1150 Alkaliphilus oremlandii OhILAs NUDIX hydrolase YP_001512692.1 1244204 D 350688 CDS YP_001512693.1 158320186 5678589 1244622..1244810 1 NC_009922.1 KEGG: drm:Dred_0592 hypothetical protein; hypothetical protein 1244810 5678589 Clos_1151 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512693.1 1244622 D 350688 CDS YP_001512694.1 158320187 5678590 1244844..1245812 1 NC_009922.1 PFAM: beta-lactamase domain protein; KEGG: cno:NT01CX_0354 metallo-beta-lactamase superfamily protein; beta-lactamase domain-containing protein 1245812 5678590 Clos_1152 Alkaliphilus oremlandii OhILAs beta-lactamase domain-containing protein YP_001512694.1 1244844 D 350688 CDS YP_001512695.1 158320188 5676051 1245828..1246043 1 NC_009922.1 KEGG: cpe:CPE0596 hypothetical protein; hypothetical protein 1246043 5676051 Clos_1153 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512695.1 1245828 D 350688 CDS YP_001512696.1 158320189 5676052 1246213..1246830 1 NC_009922.1 PFAM: Phosphoglycerate mutase; KEGG: gka:GK1466 phosphoglycerate mutase; phosphoglycerate mutase 1246830 5676052 Clos_1154 Alkaliphilus oremlandii OhILAs phosphoglycerate mutase YP_001512696.1 1246213 D 350688 CDS YP_001512697.1 158320190 5676053 1246853..1247593 1 NC_009922.1 KEGG: mem:Memar_0355 nitroreductase; nitroreductase 1247593 5676053 Clos_1155 Alkaliphilus oremlandii OhILAs nitroreductase YP_001512697.1 1246853 D 350688 CDS YP_001512698.1 158320191 5676054 1247646..1249424 1 NC_009922.1 PFAM: creatinase; peptidase M24; KEGG: cno:NT01CX_1472 peptidase, M24 family protein; peptidase M24 1249424 5676054 Clos_1156 Alkaliphilus oremlandii OhILAs peptidase M24 YP_001512698.1 1247646 D 350688 CDS YP_001512699.1 158320192 5676055 complement(1249493..1249984) 1 NC_009922.1 KEGG: bha:BH2988 hypothetical protein; hypothetical protein 1249984 5676055 Clos_1157 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512699.1 1249493 R 350688 CDS YP_001512700.1 158320193 5676056 1250115..1250723 1 NC_009922.1 KEGG: ctc:CTC01030 DNA-3-methyladenine glycosylase; TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); DNA-3-methyladenine glycosylase 1250723 5676056 Clos_1158 Alkaliphilus oremlandii OhILAs DNA-3-methyladenine glycosylase YP_001512700.1 1250115 D 350688 CDS YP_001512701.1 158320194 5676057 1250895..1251911 1 NC_009922.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: cdf:CD1263 putative FMN-dependent dehydrogenase; FMN-dependent alpha-hydroxy acid dehydrogenase 1251911 5676057 Clos_1159 Alkaliphilus oremlandii OhILAs FMN-dependent alpha-hydroxy acid dehydrogenase YP_001512701.1 1250895 D 350688 CDS YP_001512702.1 158320195 5676058 1252221..1253189 1 NC_009922.1 PFAM: polysaccharide deacetylase; KEGG: cbo:CBO2775 probable polysaccharide deacetylase; polysaccharide deacetylase 1253189 5676058 Clos_1160 Alkaliphilus oremlandii OhILAs polysaccharide deacetylase YP_001512702.1 1252221 D 350688 CDS YP_001512703.1 158320196 5676059 1253370..1254362 1 NC_009922.1 PFAM: Peptidoglycan-binding LysM; cell wall hydrolase SleB; KEGG: drm:Dred_2102 cell wall hydrolase, SleB; cell wall hydrolase SleB 1254362 5676059 Clos_1161 Alkaliphilus oremlandii OhILAs cell wall hydrolase SleB YP_001512703.1 1253370 D 350688 CDS YP_001512704.1 158320197 5676460 1254577..1255572 1 NC_009922.1 KEGG: tte:TTE0833 Aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerisation region; aspartate-semialdehyde dehydrogenase 1255572 5676460 Clos_1162 Alkaliphilus oremlandii OhILAs aspartate-semialdehyde dehydrogenase YP_001512704.1 1254577 D 350688 CDS YP_001512705.1 158320198 5676461 1255584..1256456 1 NC_009922.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1256456 5676461 Clos_1163 Alkaliphilus oremlandii OhILAs dihydrodipicolinate synthase YP_001512705.1 1255584 D 350688 CDS YP_001512706.1 158320199 5676462 1256469..1257194 1 NC_009922.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 1257194 5676462 Clos_1164 Alkaliphilus oremlandii OhILAs dihydrodipicolinate reductase YP_001512706.1 1256469 D 350688 CDS YP_001512707.1 158320200 5676464 1257699..1258847 1 NC_009922.1 PFAM: sodium:dicarboxylate symporter; KEGG: drm:Dred_0908 sodium:dicarboxylate symporter; sodium:dicarboxylate symporter 1258847 5676464 Clos_1165 Alkaliphilus oremlandii OhILAs sodium:dicarboxylate symporter YP_001512707.1 1257699 D 350688 CDS YP_001512708.1 158320201 5676465 1258939..1260765 1 NC_009922.1 TIGRFAM: oligoendopeptidase F; PFAM: peptidase M3A and M3B thimet/oligopeptidase F; Oligopeptidase F; KEGG: tte:TTE1010 Oligoendopeptidase F; oligoendopeptidase F 1260765 5676465 Clos_1166 Alkaliphilus oremlandii OhILAs oligoendopeptidase F YP_001512708.1 1258939 D 350688 CDS YP_001512709.1 158320202 5676466 1260915..1261562 1 NC_009922.1 hypothetical protein 1261562 5676466 Clos_1167 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512709.1 1260915 D 350688 CDS YP_001512710.1 158320203 5676467 complement(1261595..1261885) 1 NC_009922.1 hypothetical protein 1261885 5676467 Clos_1168 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512710.1 1261595 R 350688 CDS YP_001512711.1 158320204 5675808 1262072..1262635 1 NC_009922.1 hypothetical protein 1262635 5675808 Clos_1169 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512711.1 1262072 D 350688 CDS YP_001512712.1 158320205 5675809 complement(1262818..1263624) 1 NC_009922.1 PFAM: ATP-NAD/AcoX kinase; KEGG: cdf:CD1049 putative inorganic polyphosphate/ATP-NAD kinase; NAD(+) kinase 1263624 5675809 Clos_1170 Alkaliphilus oremlandii OhILAs NAD(+) kinase YP_001512712.1 1262818 R 350688 CDS YP_001512713.1 158320206 5675810 1263725..1264642 1 NC_009922.1 KEGG: cdf:CD1060 putative pseudouridylate synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RluA family pseudouridine synthase 1264642 5675810 Clos_1171 Alkaliphilus oremlandii OhILAs RluA family pseudouridine synthase YP_001512713.1 1263725 D 350688 CDS YP_001512714.1 158320207 5675811 1264718..1265755 1 NC_009922.1 KEGG: cdf:CD1061 hypothetical protein; hypothetical protein 1265755 5675811 Clos_1172 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512714.1 1264718 D 350688 CDS YP_001512715.1 158320208 5675812 1265877..1267640 1 NC_009922.1 KEGG: cac:CAC0955 ATP-dependent Zn protease; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 1267640 5675812 Clos_1173 Alkaliphilus oremlandii OhILAs ATP-dependent metalloprotease FtsH YP_001512715.1 1265877 D 350688 CDS YP_001512716.1 158320209 5675813 1268045..1269271 1 NC_009922.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: cbo:CBO1942 molybdopterin biosynthesis protein; molybdenum cofactor synthesis domain-containing protein 1269271 5675813 Clos_1174 Alkaliphilus oremlandii OhILAs molybdenum cofactor synthesis domain-containing protein YP_001512716.1 1268045 D 350688 CDS YP_001512717.1 158320210 5675814 1269286..1271205 1 NC_009922.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein domain I and II; MoeA domain protein domain IV; KEGG: cac:CAC2020 molybdopterin biosynthesis enzyme, MoeA, fused to molibdopterin-binding domain; putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein 1271205 5675814 Clos_1175 Alkaliphilus oremlandii OhILAs putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein YP_001512717.1 1269286 D 350688 CDS YP_001512718.1 158320211 5675815 1271233..1271664 1 NC_009922.1 PFAM: MOSC domain containing protein; KEGG: cbo:CBO1938 molybdenum cofactor sulfurase; MOSC domain-containing protein 1271664 5675815 Clos_1176 Alkaliphilus oremlandii OhILAs MOSC domain-containing protein YP_001512718.1 1271233 D 350688 CDS YP_001512719.1 158320212 5675816 complement(1271741..1273288) 1 NC_009922.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: pth:PTH_1396 membrane protein; polysaccharide biosynthesis protein 1273288 5675816 Clos_1177 Alkaliphilus oremlandii OhILAs polysaccharide biosynthesis protein YP_001512719.1 1271741 R 350688 CDS YP_001512720.1 158320213 5676937 1273515..1274147 1 NC_009922.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: GGDEF family protein; diguanylate cyclase 1274147 5676937 Clos_1178 Alkaliphilus oremlandii OhILAs diguanylate cyclase YP_001512720.1 1273515 D 350688 CDS YP_001512721.1 158320214 5676938 1274286..1274528 1 NC_009922.1 KEGG: gtn:GTNG_0542 hypothetical protein; hypothetical protein 1274528 5676938 Clos_1179 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512721.1 1274286 D 350688 CDS YP_001512722.1 158320215 5676939 complement(1274907..1276982) 1 NC_009922.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0835 ABC-type multidrug/protein/lipid transport system, ATPase component; ABC transporter 1276982 5676939 Clos_1180 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512722.1 1274907 R 350688 CDS YP_001512723.1 158320216 5676940 complement(1277001..1278749) 1 NC_009922.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0836 ABC-type multidrug/protein/lipid transport system, ATPase component; ABC transporter 1278749 5676940 Clos_1181 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512723.1 1277001 R 350688 CDS YP_001512724.1 158320217 5676941 1278918..1279103 1 NC_009922.1 KEGG: cac:CAC1617 hypothetical protein; hypothetical protein 1279103 5676941 Clos_1182 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512724.1 1278918 D 350688 CDS YP_001512725.1 158320218 5676942 1279293..1280777 1 NC_009922.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: cth:Cthe_2689 transcriptional regulator, GntR family; transcriptional regulator 1280777 5676942 Clos_1183 Alkaliphilus oremlandii OhILAs transcriptional regulator YP_001512725.1 1279293 D 350688 CDS YP_001512726.1 158320219 5676943 1280813..1281700 1 NC_009922.1 PFAM: diacylglycerol kinase catalytic region; KEGG: bca:BCE_0352 conserved hypothetical protein TIGR00147; diacylglycerol kinase catalytic subunit 1281700 5676943 Clos_1184 Alkaliphilus oremlandii OhILAs diacylglycerol kinase catalytic subunit YP_001512726.1 1280813 D 350688 CDS YP_001512727.1 158320220 5676944 1281790..1282236 1 NC_009922.1 PFAM: regulatory protein MarR; KEGG: gtn:GTNG_2597 transcriptional regulator; MarR family transcriptional regulator 1282236 5676944 Clos_1185 Alkaliphilus oremlandii OhILAs MarR family transcriptional regulator YP_001512727.1 1281790 D 350688 CDS YP_001512728.1 158320221 5676945 1282267..1287735 1 NC_009922.1 KEGG: cth:Cthe_0817 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; SMART: serine/threonine protein kinase; Tetratricopeptide domain protein; diguanylate cyclase 1287735 5676945 Clos_1186 Alkaliphilus oremlandii OhILAs diguanylate cyclase YP_001512728.1 1282267 D 350688 CDS YP_001512729.1 158320222 5676592 1288019..1289542 1 NC_009922.1 catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 1289542 5676592 Clos_1187 Alkaliphilus oremlandii OhILAs histidine ammonia-lyase YP_001512729.1 1288019 D 350688 CDS YP_001512730.1 158320223 5676593 1289558..1290826 1 NC_009922.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway; imidazolonepropionase 1290826 5676593 Clos_1188 Alkaliphilus oremlandii OhILAs imidazolonepropionase YP_001512730.1 1289558 D 350688 CDS YP_001512731.1 158320224 5676594 complement(1290868..1291155) 1 NC_009922.1 hypothetical protein 1291155 5676594 Clos_1189 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512731.1 1290868 R 350688 CDS YP_001512732.1 158320225 5676595 1291346..1292113 1 NC_009922.1 hypothetical protein 1292113 5676595 Clos_1190 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512732.1 1291346 D 350688 CDS YP_001512733.1 158320226 5676596 1292313..1292483 1 NC_009922.1 PFAM: protein of unknown function DUF896; KEGG: bha:BH2353 hypothetical protein; hypothetical protein 1292483 5676596 Clos_1191 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512733.1 1292313 D 350688 CDS YP_001512734.1 158320227 5676597 1292505..1292960 1 NC_009922.1 PFAM: CheW domain protein; KEGG: chy:CHY_0966 chemotaxis protein CheW; CheW protein 1292960 5676597 Clos_1192 Alkaliphilus oremlandii OhILAs CheW protein YP_001512734.1 1292505 D 350688 CDS YP_001512735.1 158320228 5676598 1293110..1293580 1 NC_009922.1 hypothetical protein 1293580 5676598 Clos_1193 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512735.1 1293110 D 350688 CDS YP_001512736.1 158320229 5676599 1293699..1294850 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; Sensor DegS domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: cth:Cthe_1268 histidine kinase; histidine kinase 1294850 5676599 Clos_1194 Alkaliphilus oremlandii OhILAs histidine kinase YP_001512736.1 1293699 D 350688 CDS YP_001512737.1 158320230 5676600 1294840..1295514 1 NC_009922.1 PFAM: regulatory protein LuxR; response regulator receiver; KEGG: cth:Cthe_1267 two component transcriptional regulator, LuxR family; two component LuxR family transcriptional regulator 1295514 5676600 Clos_1195 Alkaliphilus oremlandii OhILAs two component LuxR family transcriptional regulator YP_001512737.1 1294840 D 350688 CDS YP_001512738.1 158320231 5676138 1295602..1296426 1 NC_009922.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: chy:CHY_2418 DegV family protein; degV family protein 1296426 5676138 Clos_1196 Alkaliphilus oremlandii OhILAs degV family protein YP_001512738.1 1295602 D 350688 CDS YP_001512739.1 158320232 5676139 complement(1296476..1297372) 1 NC_009922.1 PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cdf:CD1079 LysR-family transcriptional regulator; LysR family transcriptional regulator 1297372 5676139 Clos_1197 Alkaliphilus oremlandii OhILAs LysR family transcriptional regulator YP_001512739.1 1296476 R 350688 CDS YP_001512740.1 158320233 5676140 1297566..1298327 1 NC_009922.1 PFAM: RelA/SpoT domain protein; KEGG: bha:BH1885 hypothetical protein; RelA/SpoT domain-containing protein 1298327 5676140 Clos_1198 Alkaliphilus oremlandii OhILAs RelA/SpoT domain-containing protein YP_001512740.1 1297566 D 350688 CDS YP_001512741.1 158320234 5676141 1298317..1299555 1 NC_009922.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cdf:CD2406 putative lipoprotein; RND family efflux transporter MFP subunit 1299555 5676141 Clos_1199 Alkaliphilus oremlandii OhILAs RND family efflux transporter MFP subunit YP_001512741.1 1298317 D 350688 CDS YP_001512742.1 158320235 5676142 1299566..1300261 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: spa:M6_Spy0664 ABC transporter ATP-binding protein; ABC transporter 1300261 5676142 Clos_1200 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512742.1 1299566 D 350688 CDS YP_001512743.1 158320236 5676143 1300254..1301447 1 NC_009922.1 PFAM: protein of unknown function DUF214; KEGG: lin:lin0234 similar to membrane protein (putative ABC transporter component); hypothetical protein 1301447 5676143 Clos_1201 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512743.1 1300254 D 350688 CDS YP_001512744.1 158320237 5676144 1301484..1302158 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cbo:CBO0905 two component response regulator; two component transcriptional regulator 1302158 5676144 Clos_1202 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001512744.1 1301484 D 350688 CDS YP_001512745.1 158320238 5676145 1302155..1303468 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: cbo:CBO0906 two component sensor kinase; integral membrane sensor signal transduction histidine kinase 1303468 5676145 Clos_1203 Alkaliphilus oremlandii OhILAs integral membrane sensor signal transduction histidine kinase YP_001512745.1 1302155 D 350688 CDS YP_001512746.1 158320239 5677481 1303799..1304374 1 NC_009922.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cth:Cthe_0890 RNA polymerase, sigma-24 subunit, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 1304374 5677481 Clos_1204 Alkaliphilus oremlandii OhILAs ECF subfamily RNA polymerase sigma-24 factor YP_001512746.1 1303799 D 350688 CDS YP_001512747.1 158320240 5677482 1304388..1305077 1 NC_009922.1 KEGG: cth:Cthe_0889 putative transmembrane anti-sigma factor; putative transmembrane anti-sigma factor 1305077 5677482 Clos_1205 Alkaliphilus oremlandii OhILAs putative transmembrane anti-sigma factor YP_001512747.1 1304388 D 350688 CDS YP_001512748.1 158320241 5677483 1305207..1307891 1 NC_009922.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 1307891 5677483 Clos_1206 Alkaliphilus oremlandii OhILAs DNA polymerase I YP_001512748.1 1305207 D 350688 CDS YP_001512749.1 158320242 5677484 1307863..1308504 1 NC_009922.1 KEGG: tte:TTE0875 dephospho-CoA kinase; TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase 1308504 5677484 Clos_1207 Alkaliphilus oremlandii OhILAs dephospho-CoA kinase YP_001512749.1 1307863 D 350688 CDS YP_001512750.1 158320243 5677485 1308528..1309097 1 NC_009922.1 PFAM: Lytic transglycosylase catalytic; KEGG: cac:CAC1100 secreted protein, similar to catalytic domain of murein transglycosylase; lytic transglycosylase 1309097 5677485 Clos_1208 Alkaliphilus oremlandii OhILAs lytic transglycosylase YP_001512750.1 1308528 D 350688 CDS YP_001512751.1 158320244 5677486 1309144..1310778 1 NC_009922.1 PFAM: extracellular solute-binding protein family 5; KEGG: tte:TTE0878 ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components; extracellular solute-binding protein 1310778 5677486 Clos_1209 Alkaliphilus oremlandii OhILAs extracellular solute-binding protein YP_001512751.1 1309144 D 350688 CDS YP_001512752.1 158320245 5677488 1311093..1311353 1 NC_009922.1 hypothetical protein 1311353 5677488 Clos_1210 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512752.1 1311093 D 350688 CDS YP_001512753.1 158320246 5677640 1311516..1312010 1 NC_009922.1 PFAM: formylmethionine deformylase; KEGG: cbo:CBO0876 peptide deformylase; formylmethionine deformylase 1312010 5677640 Clos_1211 Alkaliphilus oremlandii OhILAs formylmethionine deformylase YP_001512753.1 1311516 D 350688 CDS YP_001512754.1 158320247 5677641 complement(1312152..1313363) 1 NC_009922.1 PFAM: Amidohydrolase 3; KEGG: btk:BT9727_4230 N-acyl-D-amino-acid deacylase family protein; amidohydrolase 3 1313363 5677641 Clos_1212 Alkaliphilus oremlandii OhILAs amidohydrolase 3 YP_001512754.1 1312152 R 350688 CDS YP_001512755.1 158320248 5677642 1313839..1314267 1 NC_009922.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: dsy:DSY1174 hypothetical protein; hemerythrin-like metal-binding protein 1314267 5677642 Clos_1213 Alkaliphilus oremlandii OhILAs hemerythrin-like metal-binding protein YP_001512755.1 1313839 D 350688 CDS YP_001512756.1 158320249 5677643 1314257..1314709 1 NC_009922.1 PFAM: CheC domain protein; KEGG: dsy:DSY1175 hypothetical protein; CheC domain-containing protein 1314709 5677643 Clos_1214 Alkaliphilus oremlandii OhILAs CheC domain-containing protein YP_001512756.1 1314257 D 350688 CDS YP_001512757.1 158320250 5677644 complement(1314937..1316052) 1 NC_009922.1 PFAM: aldo/keto reductase; KEGG: cdf:CD3191 putative oxidoreductase; aldo/keto reductase 1316052 5677644 Clos_1215 Alkaliphilus oremlandii OhILAs aldo/keto reductase YP_001512757.1 1314937 R 350688 CDS YP_001512758.1 158320251 5677645 complement(1316119..1316631) 1 NC_009922.1 KEGG: cbo:CBO0467 membrane protein; membrane protein 1316631 5677645 Clos_1216 Alkaliphilus oremlandii OhILAs membrane protein YP_001512758.1 1316119 R 350688 CDS YP_001512759.1 158320252 5677646 1316895..1317989 1 NC_009922.1 KEGG: amt:Amet_3105 ATPase; ATPase 1317989 5677646 Clos_1217 Alkaliphilus oremlandii OhILAs ATPase YP_001512759.1 1316895 D 350688 CDS YP_001512760.1 158320253 5677647 1318125..1319714 1 NC_009922.1 PFAM: helicase domain protein; DbpA RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: amt:Amet_3073 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 1319714 5677647 Clos_1218 Alkaliphilus oremlandii OhILAs DEAD/DEAH box helicase YP_001512760.1 1318125 D 350688 CDS YP_001512761.1 158320254 5676698 complement(1319817..1320284) 1 NC_009922.1 KEGG: amt:Amet_3067 hypothetical protein; hypothetical protein 1320284 5676698 Clos_1219 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512761.1 1319817 R 350688 CDS YP_001512762.1 158320255 5676699 1320589..1321266 1 NC_009922.1 KEGG: amt:Amet_3063 hypothetical protein; hypothetical protein 1321266 5676699 Clos_1220 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512762.1 1320589 D 350688 CDS YP_001512763.1 158320256 5676700 complement(1321259..1322125) 1 NC_009922.1 PFAM: beta-lactamase domain protein; KEGG: amt:Amet_3062 beta-lactamase domain protein; beta-lactamase domain-containing protein 1322125 5676700 Clos_1221 Alkaliphilus oremlandii OhILAs beta-lactamase domain-containing protein YP_001512763.1 1321259 R 350688 CDS YP_001512764.1 158320257 5676701 1322312..1322941 1 NC_009922.1 hypothetical protein 1322941 5676701 Clos_1222 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512764.1 1322312 D 350688 CDS YP_001512765.1 158320258 5676702 1322957..1324462 1 NC_009922.1 PFAM: ComEC/Rec2-related protein; KEGG: cth:Cthe_0606 DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein 1324462 5676702 Clos_1223 Alkaliphilus oremlandii OhILAs ComEC/Rec2-related protein YP_001512765.1 1322957 D 350688 CDS YP_001512766.1 158320259 5676703 1324452..1325486 1 NC_009922.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: cdf:CD2474 hypothetical protein; DNA polymerase III subunit delta 1325486 5676703 Clos_1224 Alkaliphilus oremlandii OhILAs DNA polymerase III subunit delta YP_001512766.1 1324452 D 350688 CDS YP_001512767.1 158320260 5676704 complement(1325601..1325864) 1 NC_009922.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 1325864 rpsT 5676704 rpsT Alkaliphilus oremlandii OhILAs 30S ribosomal protein S20 YP_001512767.1 1325601 R 350688 CDS YP_001512768.1 158320261 5676705 1326133..1327107 1 NC_009922.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination; germination protease 1327107 5676705 Clos_1226 Alkaliphilus oremlandii OhILAs germination protease YP_001512768.1 1326133 D 350688 CDS YP_001512769.1 158320262 5676706 1327179..1328462 1 NC_009922.1 PFAM: Stage II sporulation P family protein; KEGG: cdf:CD2469 putative stage II sporulation protein P; stage II sporulation P family protein 1328462 5676706 Clos_1227 Alkaliphilus oremlandii OhILAs stage II sporulation P family protein YP_001512769.1 1327179 D 350688 CDS YP_001512770.1 158320263 5678055 1328508..1328825 1 NC_009922.1 hypothetical protein 1328825 5678055 Clos_1228 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512770.1 1328508 D 350688 CDS YP_001512771.1 158320264 5678056 1328961..1330769 1 NC_009922.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1330769 5678056 Clos_1229 Alkaliphilus oremlandii OhILAs GTP-binding protein LepA YP_001512771.1 1328961 D 350688 CDS YP_001512772.1 158320265 5678057 1330844..1331983 1 NC_009922.1 KEGG: cth:Cthe_1325 putative oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: putative oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; putative oxygen-independent coproporphyrinogen III oxidase 1331983 5678057 Clos_1230 Alkaliphilus oremlandii OhILAs putative oxygen-independent coproporphyrinogen III oxidase YP_001512772.1 1330844 D 350688 CDS YP_001512773.1 158320266 5678058 1332083..1333114 1 NC_009922.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: cdf:CD2463 heat-inducible transcription repressor; heat-inducible transcription repressor HrcA 1333114 5678058 Clos_1231 Alkaliphilus oremlandii OhILAs heat-inducible transcription repressor HrcA YP_001512773.1 1332083 D 350688 CDS YP_001512774.1 158320267 5678059 1333140..1333703 1 NC_009922.1 PFAM: GrpE protein; KEGG: cdf:CD2462 heat shock protein; GrpE protein HSP-70 cofactor 1333703 5678059 Clos_1232 Alkaliphilus oremlandii OhILAs GrpE protein HSP-70 cofactor YP_001512774.1 1333140 D 350688 CDS YP_001512775.1 158320268 5678060 1333736..1335577 1 NC_009922.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1335577 dnaK 5678060 dnaK Alkaliphilus oremlandii OhILAs molecular chaperone DnaK YP_001512775.1 1333736 D 350688 CDS YP_001512776.1 158320269 5678061 1335602..1336801 1 NC_009922.1 TIGRFAM: chaperone protein DnaJ; PFAM: DnaJ central domain protein; heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: cdf:CD2460 chaperone protein; chaperone protein DnaJ 1336801 5678061 Clos_1234 Alkaliphilus oremlandii OhILAs chaperone protein DnaJ YP_001512776.1 1335602 D 350688 CDS YP_001512777.1 158320270 5678062 1336871..1337812 1 NC_009922.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 1337812 prmA 5678062 prmA Alkaliphilus oremlandii OhILAs 50S ribosomal protein L11 methyltransferase YP_001512777.1 1336871 D 350688 CDS YP_001512778.1 158320271 5678063 1337814..1338584 1 NC_009922.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1338584 5678063 Clos_1236 Alkaliphilus oremlandii OhILAs 16S ribosomal RNA methyltransferase RsmE YP_001512778.1 1337814 D 350688 CDS YP_001512779.1 158320272 5678600 1338585..1339886 1 NC_009922.1 KEGG: cdf:CD2448 putative radical SAM superfamily protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying enzyme 1339886 5678600 Clos_1237 Alkaliphilus oremlandii OhILAs MiaB-like tRNA modifying enzyme YP_001512779.1 1338585 D 350688 CDS YP_001512780.1 158320273 5678601 1340067..1340414 1 NC_009922.1 PFAM: histidine triad (HIT) protein; KEGG: ctc:CTC02026 Hit family protein; histidine triad (HIT) protein 1340414 5678601 Clos_1238 Alkaliphilus oremlandii OhILAs histidine triad (HIT) protein YP_001512780.1 1340067 D 350688 CDS YP_001512781.1 158320274 5678602 1340544..1340723 1 NC_009922.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 1340723 rpsU 5678602 rpsU Alkaliphilus oremlandii OhILAs 30S ribosomal protein S21 YP_001512781.1 1340544 D 350688 CDS YP_001512782.1 158320275 5678603 1340762..1341205 1 NC_009922.1 KEGG: cdf:CD2446 putative tRNA binding protein; putative tRNA binding protein 1341205 5678603 Clos_1240 Alkaliphilus oremlandii OhILAs putative tRNA binding protein YP_001512782.1 1340762 D 350688 CDS YP_001512783.1 158320276 5678604 1341375..1342667 1 NC_009922.1 PFAM: protein of unknown function DUF107; KEGG: bld:BLi02730 YqeZ; hypothetical protein 1342667 5678604 Clos_1241 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512783.1 1341375 D 350688 CDS YP_001512784.1 158320277 5678605 1342678..1343679 1 NC_009922.1 PFAM: band 7 protein; KEGG: cth:Cthe_0858 protein of unknown function DUF1432; hypothetical protein 1343679 5678605 Clos_1242 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512784.1 1342678 D 350688 CDS YP_001512785.1 158320278 5678606 1343709..1344215 1 NC_009922.1 hypothetical protein 1344215 5678606 Clos_1243 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512785.1 1343709 D 350688 CDS YP_001512786.1 158320279 5678607 1344453..1344728 1 NC_009922.1 PFAM: protein of unknown function DUF1429; KEGG: cth:Cthe_1073 protein of unknown function DUF1429; hypothetical protein 1344728 5678607 Clos_1244 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512786.1 1344453 D 350688 CDS YP_001512787.1 158320280 5678608 1344741..1345937 1 NC_009922.1 PFAM: putative stage IV sporulation YqfD; KEGG: cth:Cthe_1072 putative stage IV sporulation YqfD; putative stage IV sporulation YqfD 1345937 5678608 Clos_1245 Alkaliphilus oremlandii OhILAs putative stage IV sporulation YqfD YP_001512787.1 1344741 D 350688 CDS YP_001512788.1 158320281 5676504 1345938..1346942 1 NC_009922.1 PFAM: PhoH family protein; KEGG: cdf:CD2441a PhoH-like protein; PhoH family protein 1346942 5676504 Clos_1246 Alkaliphilus oremlandii OhILAs PhoH family protein YP_001512788.1 1345938 D 350688 CDS YP_001512789.1 158320282 5676505 1346985..1349126 1 NC_009922.1 KEGG: tte:TTE0971 predicted membrane-associated HD superfamily hydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; metal-dependent phosphohydrolase 7TM intracellular region; metal-dependent phosphohydrolase 7TM extracellular region; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 1349126 5676505 Clos_1247 Alkaliphilus oremlandii OhILAs metal dependent phosphohydrolase YP_001512789.1 1346985 D 350688 CDS YP_001512790.1 158320283 5676506 1349110..1349565 1 NC_009922.1 PFAM: protein of unknown function UPF0054; KEGG: cdf:CD2440 hypothetical protein; hypothetical protein 1349565 5676506 Clos_1248 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512790.1 1349110 D 350688 CDS YP_001512791.1 158320284 5676507 1349583..1350281 1 NC_009922.1 PFAM: phosphoesterase PA-phosphatase related; diacylglycerol kinase; KEGG: tte:TTE0973 Diacylglycerol kinase; diacylglycerol kinase 1350281 5676507 Clos_1249 Alkaliphilus oremlandii OhILAs diacylglycerol kinase YP_001512791.1 1349583 D 350688 CDS YP_001512792.1 158320285 5676508 1350330..1351391 1 NC_009922.1 KEGG: cth:Cthe_0155 hypothetical protein; hypothetical protein 1351391 5676508 Clos_1250 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512792.1 1350330 D 350688 CDS YP_001512793.1 158320286 5676509 1351406..1351828 1 NC_009922.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cpr:CPR_1988 cytidine deaminase; cytidine deaminase 1351828 5676509 Clos_1251 Alkaliphilus oremlandii OhILAs cytidine deaminase YP_001512793.1 1351406 D 350688 CDS YP_001512794.1 158320287 5676510 1351818..1352705 1 NC_009922.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1352705 era 5676510 era Alkaliphilus oremlandii OhILAs GTP-binding protein Era YP_001512794.1 1351818 D 350688 CDS YP_001512795.1 158320288 5676511 1352960..1353700 1 NC_009922.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: cth:Cthe_1066 DNA repair protein RecO; DNA repair protein RecO 1353700 5676511 Clos_1253 Alkaliphilus oremlandii OhILAs DNA repair protein RecO YP_001512795.1 1352960 D 350688 CDS YP_001512796.1 158320289 5676512 1353834..1354376 1 NC_009922.1 PFAM: ubiquitin-associated- domain-containing protein; KEGG: tte:TTE0977 hypothetical protein; ubiquitin-associated domain-containing protein 1354376 5676512 Clos_1254 Alkaliphilus oremlandii OhILAs ubiquitin-associated domain-containing protein YP_001512796.1 1353834 D 350688 CDS YP_001512797.1 158320290 5676355 1354824..1356212 1 NC_009922.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase 1356212 5676355 Clos_1255 Alkaliphilus oremlandii OhILAs glycyl-tRNA synthetase YP_001512797.1 1354824 D 350688 CDS YP_001512798.1 158320291 5676356 1356762..1357400 1 NC_009922.1 PFAM: CBS domain containing protein; Helix-turn-helix type 11 domain protein; KEGG: tte:TTE0979 CBS domains; helix-turn-helix type 11 domain-containing protein 1357400 5676356 Clos_1256 Alkaliphilus oremlandii OhILAs helix-turn-helix type 11 domain-containing protein YP_001512798.1 1356762 D 350688 CDS YP_001512799.1 158320292 5676357 1357411..1358244 1 NC_009922.1 PFAM: protein of unknown function DUF299; KEGG: drm:Dred_2470 protein of unknown function DUF299; hypothetical protein 1358244 5676357 Clos_1257 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512799.1 1357411 D 350688 CDS YP_001512800.1 158320293 5676358 1358310..1360934 1 NC_009922.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 1360934 5676358 Clos_1258 Alkaliphilus oremlandii OhILAs pyruvate phosphate dikinase YP_001512800.1 1358310 D 350688 CDS YP_001512801.1 158320294 5676360 1361716..1361982 1 NC_009922.1 KEGG: bat:BAS0988 hypothetical protein; hypothetical protein 1361982 5676360 Clos_1260 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512801.1 1361716 D 350688 CDS YP_001512802.1 158320295 5676361 1362408..1362632 1 NC_009922.1 hypothetical protein 1362632 5676361 Clos_1261 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512802.1 1362408 D 350688 CDS YP_001512803.1 158320296 5676362 1363164..1363781 1 NC_009922.1 PFAM: regulatory protein TetR; KEGG: cbo:CBO0620 TetR-family transcriptional regulator; TetR family transcriptional regulator 1363781 5676362 Clos_1262 Alkaliphilus oremlandii OhILAs TetR family transcriptional regulator YP_001512803.1 1363164 D 350688 CDS YP_001512804.1 158320297 5676363 1363883..1364422 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bha:BH2121 hypothetical protein; N-acetyltransferase GCN5 1364422 5676363 Clos_1263 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001512804.1 1363883 D 350688 CDS YP_001512805.1 158320298 5677113 complement(1364976..1365617) 1 NC_009922.1 KEGG: cac:CAC0785 hypothetical protein; hypothetical protein 1365617 5677113 Clos_1264 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512805.1 1364976 R 350688 CDS YP_001512806.1 158320299 5677114 1366076..1366279 1 NC_009922.1 KEGG: cbo:CBO0838 flavoredoxin; hypothetical protein 1366279 5677114 Clos_1265 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512806.1 1366076 D 350688 CDS YP_001512807.1 158320300 5677115 complement(1366361..1366948) 1 NC_009922.1 PFAM: regulatory protein TetR; KEGG: blo:BL0153 probable TetR-like transcriptional regulator; TetR family transcriptional regulator 1366948 5677115 Clos_1266 Alkaliphilus oremlandii OhILAs TetR family transcriptional regulator YP_001512807.1 1366361 R 350688 CDS YP_001512808.1 158320301 5677116 1367319..1368020 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC0822 ABC transporter, ATP-binding protein; ABC transporter 1368020 5677116 Clos_1267 Alkaliphilus oremlandii OhILAs ABC transporter YP_001512808.1 1367319 D 350688 CDS YP_001512809.1 158320302 5677117 1368014..1370329 1 NC_009922.1 PFAM: protein of unknown function DUF214; KEGG: msi:Msm_0856 antimicrobial peptide ABC transporter, permease component; hypothetical protein 1370329 5677117 Clos_1268 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512809.1 1368014 D 350688 CDS YP_001512810.1 158320303 5677118 1370351..1371544 1 NC_009922.1 PFAM: secretion protein HlyD family protein; KEGG: ana:alr0445 HlyD family secretion protein; secretion protein HlyD family protein 1371544 5677118 Clos_1269 Alkaliphilus oremlandii OhILAs secretion protein HlyD family protein YP_001512810.1 1370351 D 350688 CDS YP_001512811.1 158320304 5677119 complement(1371924..1372232) 1 NC_009922.1 PFAM: transcriptional regulator PadR family protein; KEGG: cpr:CPR_2060 transcriptional regulator, PadR family; PadR-like family transcriptional regulator 1372232 5677119 Clos_1270 Alkaliphilus oremlandii OhILAs PadR-like family transcriptional regulator YP_001512811.1 1371924 R 350688 CDS YP_001512812.1 158320305 5677120 1372580..1373779 1 NC_009922.1 TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: chu:CHU_3423 chromate transporter, permease component; chromate transporter 1373779 5677120 Clos_1271 Alkaliphilus oremlandii OhILAs chromate transporter YP_001512812.1 1372580 D 350688 CDS YP_001512813.1 158320306 5677121 1373926..1374291 1 NC_009922.1 KEGG: dsy:DSY1203 hypothetical protein; hypothetical protein 1374291 5677121 Clos_1272 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512813.1 1373926 D 350688 CDS YP_001512814.1 158320307 5677942 1374653..1375126 1 NC_009922.1 KEGG: bld:BLi01581 YoaS; YoaS 1375126 5677942 Clos_1273 Alkaliphilus oremlandii OhILAs YoaS YP_001512814.1 1374653 D 350688 CDS YP_001512815.1 158320308 5677943 1375137..1375358 1 NC_009922.1 PFAM: helix-turn-helix domain protein; KEGG: bld:BLi01580 YozG; XRE family transcriptional regulator 1375358 5677943 Clos_1274 Alkaliphilus oremlandii OhILAs XRE family transcriptional regulator YP_001512815.1 1375137 D 350688 CDS YP_001512816.1 158320309 5677944 1375399..1376460 1 NC_009922.1 FAD/NAD(P)-binding domain; putative oxidoreductase 1376460 5677944 Clos_1275 Alkaliphilus oremlandii OhILAs putative oxidoreductase YP_001512816.1 1375399 D 350688 CDS YP_001512817.1 158320310 5677945 1376784..1378988 1 NC_009922.1 KEGG: dsy:DSY3593 hypothetical protein; hypothetical protein 1378988 5677945 Clos_1276 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512817.1 1376784 D 350688 CDS YP_001512818.1 158320311 5677946 1379229..1380233 1 NC_009922.1 dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 1380233 5677946 Clos_1277 Alkaliphilus oremlandii OhILAs deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_001512818.1 1379229 D 350688 CDS YP_001512819.1 158320312 5677947 1380442..1382256 1 NC_009922.1 synthesizes RNA primers at the replication forks; DNA primase 1382256 dnaG 5677947 dnaG Alkaliphilus oremlandii OhILAs DNA primase YP_001512819.1 1380442 D 350688 CDS YP_001512820.1 158320313 5677948 1382274..1383392 1 NC_009922.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma-70; PFAM: sigma-70 1.1 domain protein; sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; sigma-70 region 1.2; KEGG: tte:TTE1755 DNA-directed RNA polymerase sigma subunits (sigma70/sigma32); RpoD family RNA polymerase sigma factor 1383392 5677948 Clos_1279 Alkaliphilus oremlandii OhILAs RpoD family RNA polymerase sigma factor YP_001512820.1 1382274 D 350688 CDS YP_001512821.1 158320314 5677949 complement(1383473..1383688) 1 NC_009922.1 hypothetical protein 1383688 5677949 Clos_1280 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512821.1 1383473 R 350688 CDS YP_001512822.1 158320315 5677950 1383738..1384487 1 NC_009922.1 PFAM: protein of unknown function DUF633; KEGG: cdf:CD1456 hypothetical protein; hypothetical protein 1384487 5677950 Clos_1281 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512822.1 1383738 D 350688 CDS YP_001512823.1 158320316 5677800 1384472..1385590 1 NC_009922.1 PFAM: protein of unknown function DUF34; KEGG: cdf:CD1457 hypothetical protein; hypothetical protein 1385590 5677800 Clos_1282 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512823.1 1384472 D 350688 CDS YP_001512824.1 158320317 5677801 1385658..1386062 1 NC_009922.1 PFAM: ribonuclease H; KEGG: aba:Acid345_0088 ribonuclease H; ribonuclease H 1386062 5677801 Clos_1283 Alkaliphilus oremlandii OhILAs ribonuclease H YP_001512824.1 1385658 D 350688 CDS YP_001512825.1 158320318 5677803 complement(1386604..1387746) 1 NC_009922.1 PFAM: integrase family protein; KEGG: ban:BA0427 prophage LambdaBa04, site-specific recombinase, phage integrase family; integrase family protein 1387746 5677803 Clos_1284 Alkaliphilus oremlandii OhILAs integrase family protein YP_001512825.1 1386604 R 350688 CDS YP_001512826.1 158320319 5677804 complement(1387793..1388290) 1 NC_009922.1 PFAM: protein of unknown function DUF955; KEGG: cac:CAC0548 predicted metal-dependent hydrolase; hypothetical protein 1388290 5677804 Clos_1285 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512826.1 1387793 R 350688 CDS YP_001512827.1 158320320 5677805 complement(1388308..1388700) 1 NC_009922.1 PFAM: helix-turn-helix domain protein; KEGG: cac:CAC0549 predicted transcriptional regulator; XRE family transcriptional regulator 1388700 5677805 Clos_1286 Alkaliphilus oremlandii OhILAs XRE family transcriptional regulator YP_001512827.1 1388308 R 350688 CDS YP_001512828.1 158320321 5677806 1388907..1389116 1 NC_009922.1 XRE family transcriptional regulator 1389116 5677806 Clos_1287 Alkaliphilus oremlandii OhILAs XRE family transcriptional regulator YP_001512828.1 1388907 D 350688 CDS YP_001512829.1 158320322 5677807 1389169..1389384 1 NC_009922.1 TIGRFAM: DNA binding domain, excisionase family; DNA binding domain-containing protein 1389384 5677807 Clos_1288 Alkaliphilus oremlandii OhILAs DNA binding domain-containing protein YP_001512829.1 1389169 D 350688 CDS YP_001512830.1 158320323 5677808 1389609..1389950 1 NC_009922.1 hypothetical protein 1389950 5677808 Clos_1289 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512830.1 1389609 D 350688 CDS YP_001512831.1 158320324 5678268 1390030..1391289 1 NC_009922.1 PFAM: SNF2-related protein; helicase domain protein; KEGG: cth:Cthe_1653 SNF2-related protein; helicase domain-containing protein 1391289 5678268 Clos_1290 Alkaliphilus oremlandii OhILAs helicase domain-containing protein YP_001512831.1 1390030 D 350688 CDS YP_001512832.1 158320325 5678269 1391307..1391714 1 NC_009922.1 KEGG: cth:Cthe_1652 hypothetical protein; hypothetical protein 1391714 5678269 Clos_1291 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512832.1 1391307 D 350688 CDS YP_001512833.1 158320326 5678270 1391726..1391890 1 NC_009922.1 hypothetical protein 1391890 5678270 Clos_1292 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512833.1 1391726 D 350688 CDS YP_001512834.1 158320327 5678271 1391892..1392626 1 NC_009922.1 KEGG: cth:Cthe_1651 hypothetical protein; hypothetical protein 1392626 5678271 Clos_1293 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512834.1 1391892 D 350688 CDS YP_001512835.1 158320328 5678272 1392654..1395329 1 NC_009922.1 PFAM: zinc finger CHC2-family protein; KEGG: drm:Dred_2613 superfamily II helicase and inactivated derivatives-like protein; zinc finger CHC2-family protein 1395329 5678272 Clos_1294 Alkaliphilus oremlandii OhILAs zinc finger CHC2-family protein YP_001512835.1 1392654 D 350688 CDS YP_001512836.1 158320329 5678273 1395652..1396098 1 NC_009922.1 hypothetical protein 1396098 5678273 Clos_1295 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512836.1 1395652 D 350688 CDS YP_001512837.1 158320330 5678274 1396305..1396595 1 NC_009922.1 PFAM: VRR-NUC domain protein; KEGG: cth:Cthe_1646 hypothetical protein; VRR-NUC domain-containing protein 1396595 5678274 Clos_1296 Alkaliphilus oremlandii OhILAs VRR-NUC domain-containing protein YP_001512837.1 1396305 D 350688 CDS YP_001512838.1 158320331 5678275 1396592..1396846 1 NC_009922.1 KEGG: amt:Amet_0843 hypothetical protein; hypothetical protein 1396846 5678275 Clos_1297 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512838.1 1396592 D 350688 CDS YP_001512839.1 158320332 5678276 1397414..1398121 1 NC_009922.1 PFAM: B3/4 domain protein; KEGG: cac:CA_P0113 solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta; B3/4 domain-containing protein 1398121 5678276 Clos_1298 Alkaliphilus oremlandii OhILAs B3/4 domain-containing protein YP_001512839.1 1397414 D 350688 CDS YP_001512840.1 158320333 5677736 1398140..1398829 1 NC_009922.1 PFAM: Radical SAM domain protein; KEGG: cbe:Cbei_3446 radical SAM domain protein; radical SAM domain-containing protein 1398829 5677736 Clos_1299 Alkaliphilus oremlandii OhILAs radical SAM domain-containing protein YP_001512840.1 1398140 D 350688 CDS YP_001512841.1 158320334 5677737 1399039..1399194 1 NC_009922.1 hypothetical protein 1399194 5677737 Clos_1300 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512841.1 1399039 D 350688 CDS YP_001512842.1 158320335 5677738 1399531..1400229 1 NC_009922.1 hypothetical protein 1400229 5677738 Clos_1301 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512842.1 1399531 D 350688 CDS YP_001512843.1 158320336 5677739 1401720..1402517 1 NC_009922.1 KEGG: lre:Lreu_1038 hypothetical protein; hypothetical protein 1402517 5677739 Clos_1302 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512843.1 1401720 D 350688 CDS YP_001512844.1 158320337 5677740 complement(1402784..1403119) 1 NC_009922.1 KEGG: amt:Amet_0858 hypothetical protein; hypothetical protein 1403119 5677740 Clos_1303 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512844.1 1402784 R 350688 CDS YP_001512845.1 158320338 5677741 complement(1403119..1403574) 1 NC_009922.1 hypothetical protein 1403574 5677741 Clos_1304 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512845.1 1403119 R 350688 CDS YP_001512846.1 158320339 5677742 complement(1403650..1403874) 1 NC_009922.1 KEGG: pth:PTH_0422 hypothetical protein; hypothetical protein 1403874 5677742 Clos_1305 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512846.1 1403650 R 350688 CDS YP_001512847.1 158320340 5677743 complement(1403915..1404136) 1 NC_009922.1 hypothetical protein 1404136 5677743 Clos_1306 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512847.1 1403915 R 350688 CDS YP_001512848.1 158320341 5677744 complement(1404204..1404620) 1 NC_009922.1 KEGG: drm:Dred_0505 hypothetical protein; hypothetical protein 1404620 5677744 Clos_1307 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512848.1 1404204 R 350688 CDS YP_001512849.1 158320342 5676309 1404786..1405952 1 NC_009922.1 KEGG: cno:NT01CX_1424 5-methylcytosine-specific restriction enzyme B; hypothetical protein 1405952 5676309 Clos_1308 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512849.1 1404786 D 350688 CDS YP_001512850.1 158320343 5676310 complement(1406125..1406487) 1 NC_009922.1 PFAM: protein of unknown function DUF882; Peptidase M15A; KEGG: drm:Dred_0511 peptidase M15A; peptidase M15A 1406487 5676310 Clos_1309 Alkaliphilus oremlandii OhILAs peptidase M15A YP_001512850.1 1406125 R 350688 CDS YP_001512851.1 158320344 5676311 1406774..1407832 1 NC_009922.1 KEGG: mbu:Mbur_0793 hypothetical protein; hypothetical protein 1407832 5676311 Clos_1310 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512851.1 1406774 D 350688 CDS YP_001512852.1 158320345 5676312 1407869..1408219 1 NC_009922.1 KEGG: bat:BAS2760 hypothetical protein; hypothetical protein 1408219 5676312 Clos_1311 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512852.1 1407869 D 350688 CDS YP_001512853.1 158320346 5676313 1408239..1409726 1 NC_009922.1 PFAM: Erythromycin esterase; KEGG: hal:VNG1811G succinoglycan biosynthesis; erythromycin esterase 1409726 5676313 Clos_1312 Alkaliphilus oremlandii OhILAs erythromycin esterase YP_001512853.1 1408239 D 350688 CDS YP_001512854.1 158320347 5676314 1409812..1410210 1 NC_009922.1 hypothetical protein 1410210 5676314 Clos_1313 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512854.1 1409812 D 350688 CDS YP_001512855.1 158320348 5676315 1410509..1410970 1 NC_009922.1 hypothetical protein 1410970 5676315 Clos_1314 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512855.1 1410509 D 350688 CDS YP_001512856.1 158320349 5676316 1411001..1411666 1 NC_009922.1 hypothetical protein 1411666 5676316 Clos_1315 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512856.1 1411001 D 350688 CDS YP_001512857.1 158320350 5676317 1411688..1413178 1 NC_009922.1 PFAM: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 1413178 5676317 Clos_1316 Alkaliphilus oremlandii OhILAs heat shock protein DnaJ domain-containing protein YP_001512857.1 1411688 D 350688 CDS YP_001512858.1 158320351 5677161 1414773..1416743 1 NC_009922.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: msu:MS1026 adenine specific DNA methylase Mod; site-specific DNA-methyltransferase (adenine-specific) 1416743 5677161 Clos_1317 Alkaliphilus oremlandii OhILAs site-specific DNA-methyltransferase (adenine-specific) YP_001512858.1 1414773 D 350688 CDS YP_001512859.1 158320352 5677162 1416757..1419711 1 NC_009922.1 PFAM: type III restriction protein res subunit; KEGG: bca:BCE_1019 type III restriction-modification system enzyme, R subunit; type III site-specific deoxyribonuclease 1419711 5677162 Clos_1318 Alkaliphilus oremlandii OhILAs type III site-specific deoxyribonuclease YP_001512859.1 1416757 D 350688 CDS YP_001512860.1 158320353 5677163 1419864..1423112 1 NC_009922.1 KEGG: pin:Ping_0122 hypothetical protein; hypothetical protein 1423112 5677163 Clos_1319 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512860.1 1419864 D 350688 CDS YP_001512861.1 158320354 5677164 1423742..1424212 1 NC_009922.1 PFAM: DNA repair protein RadC; KEGG: pth:PTH_2457 hypothetical DNA repair proteins; DNA repair protein RadC 1424212 5677164 Clos_1320 Alkaliphilus oremlandii OhILAs DNA repair protein RadC YP_001512861.1 1423742 D 350688 CDS YP_001512862.1 158320355 5677165 1424199..1425317 1 NC_009922.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: plu:plu1515 hypothetical protein; UBA/THIF-type NAD/FAD binding protein 1425317 5677165 Clos_1321 Alkaliphilus oremlandii OhILAs UBA/THIF-type NAD/FAD binding protein YP_001512862.1 1424199 D 350688 CDS YP_001512863.1 158320356 5677166 1425310..1426401 1 NC_009922.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: stl:stu0545 molybdopterin biosynthesis protein (HesA/MoeB/ThiF family protein), putative; UBA/THIF-type NAD/FAD binding protein 1426401 5677166 Clos_1322 Alkaliphilus oremlandii OhILAs UBA/THIF-type NAD/FAD binding protein YP_001512863.1 1425310 D 350688 CDS YP_001512864.1 158320357 5677167 1426418..1428817 1 NC_009922.1 KEGG: bld:BLi03758 excinuclease ABC (subunit A); RBL05041; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase; excinuclease ABC subunit A 1428817 5677167 Clos_1323 Alkaliphilus oremlandii OhILAs excinuclease ABC subunit A YP_001512864.1 1426418 D 350688 CDS YP_001512865.1 158320358 5677168 1430677..1431681 1 NC_009922.1 PFAM: glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; KEGG: cth:Cthe_2525 glutamyl-tRNA reductase; glutamyl-tRNA reductase 1431681 5677168 Clos_1324 Alkaliphilus oremlandii OhILAs glutamyl-tRNA reductase YP_001512865.1 1430677 D 350688 CDS YP_001512866.1 158320359 5677253 1431711..1432025 1 NC_009922.1 hypothetical protein 1432025 5677253 Clos_1325 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512866.1 1431711 D 350688 CDS YP_001512867.1 158320360 5677254 1432025..1433257 1 NC_009922.1 TIGRFAM: precorrin-6x reductase; siroheme synthase; PFAM: Precorrin-6x reductase CbiJ/CobK; KEGG: cth:Cthe_2526 precorrin-2 oxidase / ferrochelatase; precorrin-6x reductase 1433257 5677254 Clos_1326 Alkaliphilus oremlandii OhILAs precorrin-6x reductase YP_001512867.1 1432025 D 350688 CDS YP_001512868.1 158320361 5677255 1433254..1434144 1 NC_009922.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 1434144 hemC 5677255 hemC Alkaliphilus oremlandii OhILAs porphobilinogen deaminase YP_001512868.1 1433254 D 350688 CDS YP_001512869.1 158320362 5677256 1434122..1435612 1 NC_009922.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: cth:Cthe_2528 uroporphyrin-III C-methyltransferase; uroporphyrin-III C-methyltransferase 1435612 5677256 Clos_1328 Alkaliphilus oremlandii OhILAs uroporphyrin-III C-methyltransferase YP_001512869.1 1434122 D 350688 CDS YP_001512870.1 158320363 5677257 1435602..1436582 1 NC_009922.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 1436582 5677257 Clos_1329 Alkaliphilus oremlandii OhILAs delta-aminolevulinic acid dehydratase YP_001512870.1 1435602 D 350688 CDS YP_001512871.1 158320364 5677258 1436582..1437856 1 NC_009922.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1437856 5677258 Clos_1330 Alkaliphilus oremlandii OhILAs glutamate-1-semialdehyde aminotransferase YP_001512871.1 1436582 D 350688 CDS YP_001512872.1 158320365 5677259 1438242..1438883 1 NC_009922.1 PFAM: protein of unknown function DUF1121; KEGG: cac:CAC1623 uncharacterized protein, ortholog of Thermotoga (4980645); hypothetical protein 1438883 5677259 Clos_1331 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512872.1 1438242 D 350688 CDS YP_001512873.1 158320366 5677260 1438935..1439330 1 NC_009922.1 forms homopentamer; channel that opens in response to pressure or hypoosmotic shock; large-conductance mechanosensitive channel 1439330 mscL 5677260 mscL Alkaliphilus oremlandii OhILAs large-conductance mechanosensitive channel YP_001512873.1 1438935 D 350688 CDS YP_001512874.1 158320367 5677261 1439350..1439610 1 NC_009922.1 hypothetical protein 1439610 5677261 Clos_1333 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512874.1 1439350 D 350688 CDS YP_001512875.1 158320368 5677306 complement(1439739..1441238) 1 NC_009922.1 PFAM: carbon starvation protein CstA; KEGG: cdf:CD2373 putative carbon starvation protein; carbon starvation protein CstA 1441238 5677306 Clos_1334 Alkaliphilus oremlandii OhILAs carbon starvation protein CstA YP_001512875.1 1439739 R 350688 CDS YP_001512876.1 158320369 5677307 complement(1441381..1442121) 1 NC_009922.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: ctc:CTC01979 transcriptional regulatory protein; LytTR family two component transcriptional regulator 1442121 5677307 Clos_1335 Alkaliphilus oremlandii OhILAs LytTR family two component transcriptional regulator YP_001512876.1 1441381 R 350688 CDS YP_001512877.1 158320370 5677308 complement(1442124..1443794) 1 NC_009922.1 PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase internal region; 5TM Receptors of the LytS-YhcK type transmembrane region; KEGG: tte:TTE0871 Regulator of cell autolysis; signal transduction histidine kinase, LytS 1443794 5677308 Clos_1336 Alkaliphilus oremlandii OhILAs signal transduction histidine kinase, LytS YP_001512877.1 1442124 R 350688 CDS YP_001512878.1 158320371 5677309 1443970..1446990 1 NC_009922.1 KEGG: chy:CHY_2653 putative restriction enzyme; putative restriction enzyme 1446990 5677309 Clos_1337 Alkaliphilus oremlandii OhILAs putative restriction enzyme YP_001512878.1 1443970 D 350688 CDS YP_001512879.1 158320372 5677310 complement(1447020..1447292) 1 NC_009922.1 hypothetical protein 1447292 5677310 Clos_1338 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512879.1 1447020 R 350688 CDS YP_001512880.1 158320373 5677311 1447491..1447994 1 NC_009922.1 hypothetical protein 1447994 5677311 Clos_1339 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512880.1 1447491 D 350688 CDS YP_001512881.1 158320374 5677312 complement(1448003..1448617) 1 NC_009922.1 PFAM: NUDIX hydrolase; KEGG: ctc:CTC00982 phosphohydrolase (MutT family protein); NUDIX hydrolase 1448617 5677312 Clos_1340 Alkaliphilus oremlandii OhILAs NUDIX hydrolase YP_001512881.1 1448003 R 350688 CDS YP_001512882.1 158320375 5677313 1449412..1451103 1 NC_009922.1 PFAM: extracellular solute-binding protein family 5; KEGG: tte:TTE2522 ABC-type dipeptide/oligopeptide/nickel transport systems, periplasmic components; extracellular solute-binding protein 1451103 5677313 Clos_1341 Alkaliphilus oremlandii OhILAs extracellular solute-binding protein YP_001512882.1 1449412 D 350688 CDS YP_001512883.1 158320376 5677314 1451191..1452156 1 NC_009922.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cac:CAC0177 oligopeptide transport permease protein; binding-protein-dependent transport system inner membrane protein 1452156 5677314 Clos_1342 Alkaliphilus oremlandii OhILAs binding-protein-dependent transport system inner membrane protein YP_001512883.1 1451191 D 350688 CDS YP_001512884.1 158320377 5676113 1452176..1453087 1 NC_009922.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_2256 oligopeptide ABC transporter, permease component; binding-protein-dependent transport systems inner membrane component 1453087 5676113 Clos_1343 Alkaliphilus oremlandii OhILAs binding-protein-dependent transport systems inner membrane component YP_001512884.1 1452176 D 350688 CDS YP_001512885.1 158320378 5676114 1453104..1454087 1 NC_009922.1 KEGG: cpr:CPR_2255 oligopeptide ABC transporter, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1454087 5676114 Clos_1344 Alkaliphilus oremlandii OhILAs oligopeptide/dipeptide ABC transporter ATPase YP_001512885.1 1453104 D 350688 CDS YP_001512886.1 158320379 5676115 1454088..1455074 1 NC_009922.1 KEGG: cpr:CPR_2254 oligopeptide ABC transporter, ATPase component; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1455074 5676115 Clos_1345 Alkaliphilus oremlandii OhILAs oligopeptide/dipeptide ABC transporter ATPase YP_001512886.1 1454088 D 350688 CDS YP_001512887.1 158320380 5676116 1455502..1455924 1 NC_009922.1 PFAM: MaoC domain protein dehydratase; KEGG: tte:TTE0551 predicted acyl dehydratase; dehydratase 1455924 5676116 Clos_1346 Alkaliphilus oremlandii OhILAs dehydratase YP_001512887.1 1455502 D 350688 CDS YP_001512888.1 158320381 5676117 1456426..1457973 1 NC_009922.1 PFAM: extracellular solute-binding protein family 5; KEGG: fnu:FN0396 dipeptide-binding protein; extracellular solute-binding protein 1457973 5676117 Clos_1347 Alkaliphilus oremlandii OhILAs extracellular solute-binding protein YP_001512888.1 1456426 D 350688 CDS YP_001512889.1 158320382 5676118 1458088..1459017 1 NC_009922.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN0397 dipeptide transport system permease protein dppB; binding-protein-dependent transport system inner membrane protein 1459017 5676118 Clos_1348 Alkaliphilus oremlandii OhILAs binding-protein-dependent transport system inner membrane protein YP_001512889.1 1458088 D 350688 CDS YP_001512890.1 158320383 5676119 1459059..1459970 1 NC_009922.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN0398 dipeptide transport system permease protein dppC; binding-protein-dependent transport systems inner membrane component 1459970 5676119 Clos_1349 Alkaliphilus oremlandii OhILAs binding-protein-dependent transport systems inner membrane component YP_001512890.1 1459059 D 350688 CDS YP_001512891.1 158320384 5676120 1459999..1460967 1 NC_009922.1 KEGG: fnu:FN0399 dipeptide transport ATP-binding protein dppD; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1460967 5676120 Clos_1350 Alkaliphilus oremlandii OhILAs oligopeptide/dipeptide ABC transporter ATPase YP_001512891.1 1459999 D 350688 CDS YP_001512892.1 158320385 5676121 1460992..1461963 1 NC_009922.1 KEGG: fnu:FN0400 dipeptide transport ATP-binding protein dppF; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1461963 5676121 Clos_1351 Alkaliphilus oremlandii OhILAs oligopeptide/dipeptide ABC transporter ATPase YP_001512892.1 1460992 D 350688 CDS YP_001512893.1 158320386 5677498 1462342..1462872 1 NC_009922.1 TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: lwe:lwe1122 ATP:cob(I)alamin adenosyltransferase protein PduO, putative; ATP--cobalamin adenosyltransferase 1462872 5677498 Clos_1352 Alkaliphilus oremlandii OhILAs ATP--cobalamin adenosyltransferase YP_001512893.1 1462342 D 350688 CDS YP_001512894.1 158320387 5677499 1463051..1463593 1 NC_009922.1 KEGG: tte:TTE2394 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 1463593 5677499 Clos_1353 Alkaliphilus oremlandii OhILAs hypoxanthine phosphoribosyltransferase YP_001512894.1 1463051 D 350688 CDS YP_001512895.1 158320388 5677500 1463740..1463910 1 NC_009922.1 hypothetical protein 1463910 5677500 Clos_1354 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512895.1 1463740 D 350688 CDS YP_001512896.1 158320389 5677501 1464081..1465076 1 NC_009922.1 hypothetical protein 1465076 5677501 Clos_1355 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512896.1 1464081 D 350688 CDS YP_001512897.1 158320390 5677503 1466983..1468137 1 NC_009922.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1468137 5677503 Clos_1357 Alkaliphilus oremlandii OhILAs chorismate synthase YP_001512897.1 1466983 D 350688 CDS YP_001512898.1 158320391 5677504 1468139..1469230 1 NC_009922.1 PFAM: 3-dehydroquinate synthase; KEGG: tte:TTE1011 3-dehydroquinate synthetase; 3-dehydroquinate synthase 1469230 5677504 Clos_1358 Alkaliphilus oremlandii OhILAs 3-dehydroquinate synthase YP_001512898.1 1468139 D 350688 CDS YP_001512899.1 158320392 5677505 1469211..1470494 1 NC_009922.1 TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: bha:BH1667 5-enolpyruvoylshikimate-3-phosphate synthase; 3-phosphoshikimate 1-carboxyvinyltransferase 1470494 5677505 Clos_1359 Alkaliphilus oremlandii OhILAs 3-phosphoshikimate 1-carboxyvinyltransferase YP_001512899.1 1469211 D 350688 CDS YP_001512900.1 158320393 5677506 1470726..1471307 1 NC_009922.1 PFAM: Propanediol utilization protein; KEGG: cdf:CD2683 putative propanediol utilization protein; propanediol utilization protein 1471307 5677506 Clos_1360 Alkaliphilus oremlandii OhILAs propanediol utilization protein YP_001512900.1 1470726 D 350688 CDS YP_001512901.1 158320394 5678407 1471322..1471990 1 NC_009922.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1471990 5678407 Clos_1361 Alkaliphilus oremlandii OhILAs deoxyribose-phosphate aldolase YP_001512901.1 1471322 D 350688 CDS YP_001512902.1 158320395 5678408 1472105..1473949 1 NC_009922.1 KEGG: lsa:LSA0870 hypothetical protein; hypothetical protein 1473949 5678408 Clos_1362 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512902.1 1472105 D 350688 CDS YP_001512903.1 158320396 5678409 1473950..1474522 1 NC_009922.1 PFAM: NADPH-dependent FMN reductase; KEGG: det:DET1371 NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1474522 5678409 Clos_1363 Alkaliphilus oremlandii OhILAs NADPH-dependent FMN reductase YP_001512903.1 1473950 D 350688 CDS YP_001512904.1 158320397 5678410 complement(1474637..1475731) 1 NC_009922.1 TIGRFAM: GTP-binding protein YchF; PFAM: GTP-binding protein HSR1-related; Protein of unknown function DUF933; KEGG: cdf:CD2662 putative GTP-binding protein; GTP-binding protein YchF 1475731 5678410 Clos_1364 Alkaliphilus oremlandii OhILAs GTP-binding protein YchF YP_001512904.1 1474637 R 350688 CDS YP_001512905.1 158320398 5678411 1476054..1476626 1 NC_009922.1 TIGRFAM: Sporulation lipoprotein YhcN/YlaJ; KEGG: ctc:CTC01534 hypothetical protein; sporulation lipoprotein YhcN/YlaJ 1476626 5678411 Clos_1365 Alkaliphilus oremlandii OhILAs sporulation lipoprotein YhcN/YlaJ YP_001512905.1 1476054 D 350688 CDS YP_001512906.1 158320399 5678412 1476698..1477960 1 NC_009922.1 PFAM: peptidase M16 domain protein; KEGG: cdf:CD2661 probable peptidase; peptidase M16 domain-containing protein 1477960 5678412 Clos_1366 Alkaliphilus oremlandii OhILAs peptidase M16 domain-containing protein YP_001512906.1 1476698 D 350688 CDS YP_001512907.1 158320400 5678413 1477980..1479269 1 NC_009922.1 PFAM: peptidase M16 domain protein; KEGG: cdf:CD2660 probable peptidase; peptidase M16 domain-containing protein 1479269 5678413 Clos_1367 Alkaliphilus oremlandii OhILAs peptidase M16 domain-containing protein YP_001512907.1 1477980 D 350688 CDS YP_001512908.1 158320401 5678414 1479384..1480118 1 NC_009922.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 1480118 5678414 Clos_1368 Alkaliphilus oremlandii OhILAs prolipoprotein diacylglyceryl transferase YP_001512908.1 1479384 D 350688 CDS YP_001512909.1 158320402 5678415 1480359..1480517 1 NC_009922.1 hypothetical protein 1480517 5678415 Clos_1369 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512909.1 1480359 D 350688 CDS YP_001512910.1 158320403 5678732 1480832..1481263 1 NC_009922.1 MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 1481263 5678732 Clos_1370 Alkaliphilus oremlandii OhILAs cell division protein MraZ YP_001512910.1 1480832 D 350688 CDS YP_001512911.1 158320404 5678733 1481285..1482220 1 NC_009922.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: cdf:CD2658 S-adenosyl-methyltransferase; S-adenosyl-methyltransferase MraW 1482220 mraW 5678733 mraW Alkaliphilus oremlandii OhILAs S-adenosyl-methyltransferase MraW YP_001512911.1 1481285 D 350688 CDS YP_001512912.1 158320405 5678734 1482254..1482742 1 NC_009922.1 TIGRFAM: cell division protein FtsL; KEGG: tte:TTE1652 hypothetical protein; cell division protein FtsL 1482742 5678734 Clos_1372 Alkaliphilus oremlandii OhILAs cell division protein FtsL YP_001512912.1 1482254 D 350688 CDS YP_001512913.1 158320406 5678735 1482756..1484924 1 NC_009922.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: cdf:CD2656 stage V sporulation protein D (sporulation specific penicillin-binding protein); peptidoglycan glycosyltransferase 1484924 5678735 Clos_1373 Alkaliphilus oremlandii OhILAs peptidoglycan glycosyltransferase YP_001512913.1 1482756 D 350688 CDS YP_001512914.1 158320407 5678736 1485065..1486528 1 NC_009922.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1486528 murE 5678736 murE Alkaliphilus oremlandii OhILAs UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001512914.1 1485065 D 350688 CDS YP_001512915.1 158320408 5678737 1486525..1487919 1 NC_009922.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cth:Cthe_0977 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 1487919 5678737 Clos_1375 Alkaliphilus oremlandii OhILAs UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase YP_001512915.1 1486525 D 350688 CDS YP_001512916.1 158320409 5678738 1487926..1488924 1 NC_009922.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1488924 mraY 5678738 mraY Alkaliphilus oremlandii OhILAs phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001512916.1 1487926 D 350688 CDS YP_001512917.1 158320410 5678739 1488941..1490305 1 NC_009922.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1490305 murD 5678739 murD Alkaliphilus oremlandii OhILAs UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001512917.1 1488941 D 350688 CDS YP_001512918.1 158320411 5678740 1490382..1491434 1 NC_009922.1 TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; KEGG: cdf:CD2652 cell division/stage V sporulation protein; cell division protein FtsW 1491434 5678740 Clos_1378 Alkaliphilus oremlandii OhILAs cell division protein FtsW YP_001512918.1 1490382 D 350688 CDS YP_001512919.1 158320412 5675908 1491440..1492540 1 NC_009922.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1492540 murG 5675908 murG Alkaliphilus oremlandii OhILAs undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001512919.1 1491440 D 350688 CDS YP_001512920.1 158320413 5675909 1492652..1493917 1 NC_009922.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1493917 5675909 Clos_1380 Alkaliphilus oremlandii OhILAs UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001512920.1 1492652 D 350688 CDS YP_001512921.1 158320414 5675910 1493986..1494768 1 NC_009922.1 PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: drm:Dred_0679 polypeptide-transport-associated domain protein, FtsQ-type; polypeptide-transport-associated domain-containing protein 1494768 5675910 Clos_1381 Alkaliphilus oremlandii OhILAs polypeptide-transport-associated domain-containing protein YP_001512921.1 1493986 D 350688 CDS YP_001512922.1 158320415 5675911 1494772..1495503 1 NC_009922.1 PFAM: protein of unknown function DUF881; KEGG: tte:TTE1642 hypothetical protein; hypothetical protein 1495503 5675911 Clos_1382 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512922.1 1494772 D 350688 CDS YP_001512923.1 158320416 5675912 1495520..1496242 1 NC_009922.1 PFAM: protein of unknown function DUF881; KEGG: cdf:CD2648 hypothetical protein; hypothetical protein 1496242 5675912 Clos_1383 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512923.1 1495520 D 350688 CDS YP_001512924.1 158320417 5675913 1496243..1496584 1 NC_009922.1 PFAM: protein of unknown function DUF1290; KEGG: tte:TTE1641 small basic protein; hypothetical protein 1496584 5675913 Clos_1384 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512924.1 1496243 D 350688 CDS YP_001512925.1 158320418 5675914 1496916..1498022 1 NC_009922.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: cth:Cthe_0445 cell division protein FtsZ; cell division protein FtsZ 1498022 5675914 Clos_1385 Alkaliphilus oremlandii OhILAs cell division protein FtsZ YP_001512925.1 1496916 D 350688 CDS YP_001512926.1 158320419 5675915 1498302..1499192 1 NC_009922.1 PFAM: peptidase U4 sporulation factor SpoIIGA; KEGG: cth:Cthe_0446 peptidase U4, sporulation factor SpoIIGA; peptidase U4 sporulation factor SpoIIGA 1499192 5675915 Clos_1386 Alkaliphilus oremlandii OhILAs peptidase U4 sporulation factor SpoIIGA YP_001512926.1 1498302 D 350688 CDS YP_001512927.1 158320420 5675916 1499239..1499973 1 NC_009922.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; sporulation sigma factor SigE 1499973 5675916 Clos_1387 Alkaliphilus oremlandii OhILAs sporulation sigma factor SigE YP_001512927.1 1499239 D 350688 CDS YP_001512928.1 158320421 5676801 1500170..1500943 1 NC_009922.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin; sporulation sigma factor SigG 1500943 5676801 Clos_1388 Alkaliphilus oremlandii OhILAs sporulation sigma factor SigG YP_001512928.1 1500170 D 350688 CDS YP_001512929.1 158320422 5676802 1501202..1501525 1 NC_009922.1 TIGRFAM: Sporulation protein YlmC/YmxH; PFAM: PRC-barrel domain protein; KEGG: drm:Dred_0688 PRC-barrel domain protein; sporulation protein YlmC/YmxH 1501525 5676802 Clos_1389 Alkaliphilus oremlandii OhILAs sporulation protein YlmC/YmxH YP_001512929.1 1501202 D 350688 CDS YP_001512930.1 158320423 5676803 1501657..1502121 1 NC_009922.1 PFAM: ATP-cone domain protein; KEGG: cth:Cthe_0450 ribonucleotide reductase regulator NrdR-like protein; transcriptional regulator NrdR 1502121 nrdR 5676803 nrdR Alkaliphilus oremlandii OhILAs transcriptional regulator NrdR YP_001512930.1 1501657 D 350688 CDS YP_001512931.1 158320424 5676804 1502173..1502985 1 NC_009922.1 PFAM: protein of unknown function DUF152; KEGG: pth:PTH_1832 hypothetical protein; hypothetical protein 1502985 5676804 Clos_1391 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512931.1 1502173 D 350688 CDS YP_001512932.1 158320425 5676805 1503000..1503713 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE1633 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; two component transcriptional regulator 1503713 5676805 Clos_1392 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001512932.1 1503000 D 350688 CDS YP_001512933.1 158320426 5676806 1503723..1505486 1 NC_009922.1 KEGG: cth:Cthe_1393 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 1505486 5676806 Clos_1393 Alkaliphilus oremlandii OhILAs multi-sensor signal transduction histidine kinase YP_001512933.1 1503723 D 350688 CDS YP_001512934.1 158320427 5676807 1505674..1506399 1 NC_009922.1 PFAM: protein of unknown function DUF1614; KEGG: tte:TTE1626 hypothetical protein; hypothetical protein 1506399 5676807 Clos_1394 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512934.1 1505674 D 350688 CDS YP_001512935.1 158320428 5676808 1506386..1507588 1 NC_009922.1 PFAM: Stage II sporulation P family protein; KEGG: tte:TTE1625 stage II sporulation protein P; stage II sporulation P family protein 1507588 5676808 Clos_1395 Alkaliphilus oremlandii OhILAs stage II sporulation P family protein YP_001512935.1 1506386 D 350688 CDS YP_001512936.1 158320429 5676809 1507626..1507892 1 NC_009922.1 hypothetical protein 1507892 5676809 Clos_1396 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512936.1 1507626 D 350688 CDS YP_001512937.1 158320430 5677923 1507920..1508375 1 NC_009922.1 KEGG: tte:TTE1621 hypothetical protein; hypothetical protein 1508375 5677923 Clos_1397 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512937.1 1507920 D 350688 CDS YP_001512938.1 158320431 5677924 1508498..1509856 1 NC_009922.1 PFAM: protein of unknown function DUF512; KEGG: cdf:CD2633 hypothetical protein; hypothetical protein 1509856 5677924 Clos_1398 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512938.1 1508498 D 350688 CDS YP_001512939.1 158320432 5677925 1509849..1511171 1 NC_009922.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1511171 engA 5677925 engA Alkaliphilus oremlandii OhILAs GTP-binding protein EngA YP_001512939.1 1509849 D 350688 CDS YP_001512940.1 158320433 5677926 1511175..1511768 1 NC_009922.1 PFAM: protein of unknown function DUF205; KEGG: cdf:CD2631 hypothetical protein; hypothetical protein 1511768 5677926 Clos_1400 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512940.1 1511175 D 350688 CDS YP_001512941.1 158320434 5677927 1511782..1512813 1 NC_009922.1 PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: cdf:CD2630 glycerol-3-phosphate dehydrogenase (NAD(P)+); glycerol-3-phosphate dehydrogenase (NAD(P)(+)) 1512813 5677927 Clos_1401 Alkaliphilus oremlandii OhILAs glycerol-3-phosphate dehydrogenase (NAD(P)(+)) YP_001512941.1 1511782 D 350688 CDS YP_001512942.1 158320435 5677928 1513024..1514502 1 NC_009922.1 TIGRFAM: Sporulation stage IV protein A; KEGG: cth:Cthe_1021 stage IV sporulation protein A; sporulation stage IV protein A 1514502 5677928 Clos_1402 Alkaliphilus oremlandii OhILAs sporulation stage IV protein A YP_001512942.1 1513024 D 350688 CDS YP_001512943.1 158320436 5677929 1514975..1515913 1 NC_009922.1 PFAM: TPR repeat-containing protein; Sel1 domain protein repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ctc:CTC01770 conserved protein, tetratricopeptide repeat family protein; hypothetical protein 1515913 5677929 Clos_1403 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512943.1 1514975 D 350688 CDS YP_001512944.1 158320437 5677930 1516115..1517878 1 NC_009922.1 KEGG: dsy:DSY0955 hypothetical protein; hypothetical protein 1517878 5677930 Clos_1404 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512944.1 1516115 D 350688 CDS YP_001512945.1 158320438 5677931 1517897..1518277 1 NC_009922.1 hypothetical protein 1518277 5677931 Clos_1405 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512945.1 1517897 D 350688 CDS YP_001512946.1 158320439 5675917 1518542..1519840 1 NC_009922.1 KEGG: cth:Cthe_0793 hypothetical protein; hypothetical protein 1519840 5675917 Clos_1406 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512946.1 1518542 D 350688 CDS YP_001512947.1 158320440 5675918 1519850..1520554 1 NC_009922.1 PFAM: alanine racemase domain protein; KEGG: cdf:CD2623 putative alanine racemase; alanine racemase domain-containing protein 1520554 5675918 Clos_1407 Alkaliphilus oremlandii OhILAs alanine racemase domain-containing protein YP_001512947.1 1519850 D 350688 CDS YP_001512948.1 158320441 5675919 1520582..1521022 1 NC_009922.1 PFAM: protein of unknown function DUF552; KEGG: pth:PTH_1827 hypothetical protein; hypothetical protein 1521022 5675919 Clos_1408 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512948.1 1520582 D 350688 CDS YP_001512949.1 158320442 5675920 1521072..1521344 1 NC_009922.1 PFAM: protein of unknown function YGGT; KEGG: swo:Swol_0956 protein of unknown function YGGT; hypothetical protein 1521344 5675920 Clos_1409 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512949.1 1521072 D 350688 CDS YP_001512950.1 158320443 5675921 1521362..1522150 1 NC_009922.1 PFAM: RNA-binding S4 domain protein; KEGG: cdf:CD2620 putative RNA-binding cell division protein; RNA-binding S4 domain-containing protein 1522150 5675921 Clos_1410 Alkaliphilus oremlandii OhILAs RNA-binding S4 domain-containing protein YP_001512950.1 1521362 D 350688 CDS YP_001512951.1 158320444 5675922 1522174..1522653 1 NC_009922.1 PFAM: DivIVA family protein; KEGG: tte:TTE1596 Cell division initiation protein; DivIVA family protein 1522653 5675922 Clos_1411 Alkaliphilus oremlandii OhILAs DivIVA family protein YP_001512951.1 1522174 D 350688 CDS YP_001512952.1 158320445 5675923 1522759..1523457 1 NC_009922.1 PFAM: purine or other phosphorylase family 1; KEGG: cdf:CD2611 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; adenosylhomocysteine nucleosidase 1523457 5675923 Clos_1412 Alkaliphilus oremlandii OhILAs adenosylhomocysteine nucleosidase YP_001512952.1 1522759 D 350688 CDS YP_001512953.1 158320446 5675924 1523471..1524259 1 NC_009922.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate; 3-deoxy-7-phosphoheptulonate synthase 1524259 5675924 Clos_1413 Alkaliphilus oremlandii OhILAs 3-deoxy-7-phosphoheptulonate synthase YP_001512953.1 1523471 D 350688 CDS YP_001512954.1 158320447 5675925 1524312..1524629 1 NC_009922.1 KEGG: tte:TTE1573 hypothetical protein; hypothetical protein 1524629 5675925 Clos_1414 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512954.1 1524312 D 350688 CDS YP_001512955.1 158320448 5675926 1524640..1525320 1 NC_009922.1 TIGRFAM: Sporulation protein YteA; KEGG: cbo:CBO1474 general stress protein; TraR/DksA family transcriptional regulator 1525320 5675926 Clos_1415 Alkaliphilus oremlandii OhILAs TraR/DksA family transcriptional regulator YP_001512955.1 1524640 D 350688 CDS YP_001512956.1 158320449 5676450 1525405..1525839 1 NC_009922.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1525839 5676450 Clos_1416 Alkaliphilus oremlandii OhILAs lipoprotein signal peptidase YP_001512956.1 1525405 D 350688 CDS YP_001512957.1 158320450 5676451 1525873..1526799 1 NC_009922.1 KEGG: cbo:CBO1476 ribosomal large subunit pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 1526799 5676451 Clos_1417 Alkaliphilus oremlandii OhILAs RluA family pseudouridine synthase YP_001512957.1 1525873 D 350688 CDS YP_001512958.1 158320451 5676452 1526819..1527349 1 NC_009922.1 PFAM: phosphoribosyltransferase; KEGG: cdf:CD2595 PyrR bifunctional protein; uracil phosphoribosyltransferase 1527349 5676452 Clos_1418 Alkaliphilus oremlandii OhILAs uracil phosphoribosyltransferase YP_001512958.1 1526819 D 350688 CDS YP_001512959.1 158320452 5676453 complement(1527374..1529155) 1 NC_009922.1 PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cdf:CD2592 fibronectin-binding protein; fibronectin-binding A domain-containing protein 1529155 5676453 Clos_1419 Alkaliphilus oremlandii OhILAs fibronectin-binding A domain-containing protein YP_001512959.1 1527374 R 350688 CDS YP_001512960.1 158320453 5676454 1529409..1530251 1 NC_009922.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 1530251 dapF 5676454 dapF Alkaliphilus oremlandii OhILAs diaminopimelate epimerase YP_001512960.1 1529409 D 350688 CDS YP_001512961.1 158320454 5676455 1530332..1531213 1 NC_009922.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: cth:Cthe_1317 hypothetical protein; hypothetical protein 1531213 5676455 Clos_1421 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512961.1 1530332 D 350688 CDS YP_001512962.1 158320455 5676456 1531227..1531508 1 NC_009922.1 PFAM: protein of unknown function DUF370; KEGG: cno:NT01CX_2250 hypothetical UPF0296 protein; hypothetical protein 1531508 5676456 Clos_1422 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512962.1 1531227 D 350688 CDS YP_001512963.1 158320456 5676457 1531538..1532140 1 NC_009922.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1532140 gmk 5676457 gmk Alkaliphilus oremlandii OhILAs guanylate kinase YP_001512963.1 1531538 D 350688 CDS YP_001512964.1 158320457 5676458 1532155..1532370 1 NC_009922.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 1532370 rpoZ 5676458 rpoZ Alkaliphilus oremlandii OhILAs DNA-directed RNA polymerase subunit omega YP_001512964.1 1532155 D 350688 CDS YP_001512965.1 158320458 5676459 1532383..1533582 1 NC_009922.1 KEGG: cdf:CD2587 coenzyme A biosynthesis bifunctional protein; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 1533582 5676459 Clos_1425 Alkaliphilus oremlandii OhILAs phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_001512965.1 1532383 D 350688 CDS YP_001512966.1 158320459 5677122 1533681..1536155 1 NC_009922.1 KEGG: cdf:CD2586 putative primosomal protein N'; TIGRFAM: primosomal protein N'; PFAM: helicase domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; primosomal protein N' 1536155 5677122 Clos_1426 Alkaliphilus oremlandii OhILAs primosomal protein N' YP_001512966.1 1533681 D 350688 CDS YP_001512967.1 158320460 5677123 1536172..1536615 1 NC_009922.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1536615 def 5677123 def Alkaliphilus oremlandii OhILAs peptide deformylase YP_001512967.1 1536172 D 350688 CDS YP_001512968.1 158320461 5677124 1536626..1537558 1 NC_009922.1 TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; KEGG: cdf:CD2584 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase 1537558 5677124 Clos_1428 Alkaliphilus oremlandii OhILAs methionyl-tRNA formyltransferase YP_001512968.1 1536626 D 350688 CDS YP_001512969.1 158320462 5677125 1537560..1538339 1 NC_009922.1 PFAM: protein of unknown function DUF116; KEGG: cdf:CD2583 hypothetical protein; hypothetical protein 1538339 5677125 Clos_1429 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512969.1 1537560 D 350688 CDS YP_001512970.1 158320463 5677126 1538344..1539036 1 NC_009922.1 PFAM: peptidase membrane zinc metallopeptidase putative; KEGG: cdf:CD2582 putative membrane-associated neutral zinc metallopeptidase; peptidase membrane zinc metallopeptidase putative 1539036 5677126 Clos_1430 Alkaliphilus oremlandii OhILAs peptidase membrane zinc metallopeptidase putative YP_001512970.1 1538344 D 350688 CDS YP_001512971.1 158320464 5677127 1539098..1540435 1 NC_009922.1 TIGRFAM: sun protein; transcription antitermination factor NusB; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: cth:Cthe_0571 sun protein; sun protein 1540435 5677127 Clos_1431 Alkaliphilus oremlandii OhILAs sun protein YP_001512971.1 1539098 D 350688 CDS YP_001512972.1 158320465 5677128 1540455..1541486 1 NC_009922.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1541486 5677128 Clos_1432 Alkaliphilus oremlandii OhILAs ribosomal RNA large subunit methyltransferase N YP_001512972.1 1540455 D 350688 CDS YP_001512973.1 158320466 5677129 1541547..1542299 1 NC_009922.1 PFAM: Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: tte:TTE1501 protein serine/threonine phosphatases; protein serine/threonine phosphatase 1542299 5677129 Clos_1433 Alkaliphilus oremlandii OhILAs protein serine/threonine phosphatase YP_001512973.1 1541547 D 350688 CDS YP_001512974.1 158320467 5677130 1542304..1544259 1 NC_009922.1 PFAM: protein kinase; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; KEGG: tte:TTE1500 serine/threonine protein kinase; serine/threonine protein kinase with PASTA sensor(s) 1544259 5677130 Clos_1434 Alkaliphilus oremlandii OhILAs serine/threonine protein kinase with PASTA sensor(s) YP_001512974.1 1542304 D 350688 CDS YP_001512975.1 158320468 5677131 1544270..1545148 1 NC_009922.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: cdf:CD2576 putative ATP/GTP-binding protein; ribosome small subunit-dependent GTPase A 1545148 5677131 Clos_1435 Alkaliphilus oremlandii OhILAs ribosome small subunit-dependent GTPase A YP_001512975.1 1544270 D 350688 CDS YP_001512976.1 158320469 5678045 1545154..1545807 1 NC_009922.1 PFAM: ribulose-phosphate 3-epimerase; KEGG: cdf:CD2575 ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 1545807 5678045 Clos_1436 Alkaliphilus oremlandii OhILAs ribulose-phosphate 3-epimerase YP_001512976.1 1545154 D 350688 CDS YP_001512977.1 158320470 5678046 1545822..1546457 1 NC_009922.1 TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: cth:Cthe_0577 thiamine pyrophosphokinase; thiamine pyrophosphokinase 1546457 5678046 Clos_1437 Alkaliphilus oremlandii OhILAs thiamine pyrophosphokinase YP_001512977.1 1545822 D 350688 CDS YP_001512978.1 158320471 5678047 complement(1546786..1546977) 1 NC_009922.1 required for 70S ribosome assembly; 50S ribosomal protein L28 1546977 rpmB 5678047 rpmB Alkaliphilus oremlandii OhILAs 50S ribosomal protein L28 YP_001512978.1 1546786 R 350688 CDS YP_001512979.1 158320472 5678048 1547313..1547669 1 NC_009922.1 PFAM: protein of unknown function DUF322; KEGG: cbo:CBO2498 hypothetical protein; hypothetical protein 1547669 5678048 Clos_1439 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512979.1 1547313 D 350688 CDS YP_001512980.1 158320473 5678049 1547688..1549334 1 NC_009922.1 PFAM: Dak phosphatase; KEGG: cdf:CD2561 putative phosphatase; Dak phosphatase 1549334 5678049 Clos_1440 Alkaliphilus oremlandii OhILAs Dak phosphatase YP_001512980.1 1547688 D 350688 CDS YP_001512981.1 158320474 5678050 1549457..1551493 1 NC_009922.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1551493 5678050 Clos_1441 Alkaliphilus oremlandii OhILAs ATP-dependent DNA helicase RecG YP_001512981.1 1549457 D 350688 CDS YP_001512982.1 158320475 5678051 1551557..1552117 1 NC_009922.1 TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein; KEGG: cdf:CD2559 hypothetical protein; putative methyltransferase 1552117 5678051 Clos_1442 Alkaliphilus oremlandii OhILAs putative methyltransferase YP_001512982.1 1551557 D 350688 CDS YP_001512983.1 158320476 5678052 1552117..1552590 1 NC_009922.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1552590 coaD 5678052 coaD Alkaliphilus oremlandii OhILAs phosphopantetheine adenylyltransferase YP_001512983.1 1552117 D 350688 CDS YP_001512984.1 158320477 5678053 1552614..1553060 1 NC_009922.1 KEGG: tte:TTE1485 archaeal/vacuolar-type H+-ATPase subunit H; vacuolar-type H+-ATPase subunit H 1553060 5678053 Clos_1444 Alkaliphilus oremlandii OhILAs vacuolar-type H+-ATPase subunit H YP_001512984.1 1552614 D 350688 CDS YP_001512985.1 158320478 5678054 complement(1553106..1554350) 1 NC_009922.1 TIGRFAM: Sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein; KEGG: drm:Dred_2080 nucleoside recognition domain protein; sporulation integral membrane protein YlbJ 1554350 5678054 Clos_1445 Alkaliphilus oremlandii OhILAs sporulation integral membrane protein YlbJ YP_001512985.1 1553106 R 350688 CDS YP_001512986.1 158320479 5678552 complement(1554418..1555692) 1 NC_009922.1 PFAM: protein of unknown function DUF795; KEGG: cdf:CD1174 hypothetical protein; hypothetical protein 1555692 5678552 Clos_1446 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512986.1 1554418 R 350688 CDS YP_001512987.1 158320480 5678553 1555899..1557092 1 NC_009922.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 1557092 5678553 Clos_1447 Alkaliphilus oremlandii OhILAs acetate kinase YP_001512987.1 1555899 D 350688 CDS YP_001512988.1 158320481 5678554 1557246..1557779 1 NC_009922.1 PFAM: protein of unknown function DUF177; KEGG: cdf:CD1176 hypothetical protein; hypothetical protein 1557779 5678554 Clos_1448 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001512988.1 1557246 D 350688 CDS YP_001512989.1 158320482 5678555 1557784..1557969 1 NC_009922.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1557969 rpmF 5678555 rpmF Alkaliphilus oremlandii OhILAs 50S ribosomal protein L32 YP_001512989.1 1557784 D 350688 CDS YP_001512990.1 158320483 5678556 1558148..1558717 1 NC_009922.1 negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria; fatty acid biosynthesis transcriptional regulator 1558717 5678556 Clos_1450 Alkaliphilus oremlandii OhILAs fatty acid biosynthesis transcriptional regulator YP_001512990.1 1558148 D 350688 CDS YP_001512991.1 158320484 5678557 1558729..1559736 1 NC_009922.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1559736 5678557 Clos_1451 Alkaliphilus oremlandii OhILAs putative glycerol-3-phosphate acyltransferase PlsX YP_001512991.1 1558729 D 350688 CDS YP_001512992.1 158320485 5678558 1559729..1560724 1 NC_009922.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1560724 5678558 Clos_1452 Alkaliphilus oremlandii OhILAs 3-oxoacyl-ACP synthase YP_001512992.1 1559729 D 350688 CDS YP_001512993.1 158320486 5678559 1560780..1561730 1 NC_009922.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: tte:TTE1474 dioxygenases related to 2-nitropropane dioxygenase; 2-nitropropane dioxygenase 1561730 5678559 Clos_1453 Alkaliphilus oremlandii OhILAs 2-nitropropane dioxygenase YP_001512993.1 1560780 D 350688 CDS YP_001512994.1 158320487 5678560 1561734..1562684 1 NC_009922.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: tte:TTE1473 (acyl-carrier-protein) S-malonyltransferase; malonyl CoA-acyl carrier protein transacylase 1562684 5678560 Clos_1454 Alkaliphilus oremlandii OhILAs malonyl CoA-acyl carrier protein transacylase YP_001512994.1 1561734 D 350688 CDS YP_001512995.1 158320488 5678561 1562687..1563430 1 NC_009922.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bca:BCE_3893 3-ketoacyl-(acyl-carrier-protein) reductase; 3-oxoacyl-(acyl-carrier-protein) reductase 1563430 5678561 Clos_1455 Alkaliphilus oremlandii OhILAs 3-oxoacyl-(acyl-carrier-protein) reductase YP_001512995.1 1562687 D 350688 CDS YP_001512996.1 158320489 5678562 1563546..1563776 1 NC_009922.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: cdf:CD1183 acyl carrier protein; acyl carrier protein 1563776 5678562 Clos_1456 Alkaliphilus oremlandii OhILAs acyl carrier protein YP_001512996.1 1563546 D 350688 CDS YP_001512997.1 158320490 5678563 1563817..1565055 1 NC_009922.1 PFAM: Beta-ketoacyl synthase; KEGG: tte:TTE1470 3-oxoacyl-(acyl-carrier-protein) synthase; Beta-ketoacyl synthase 1565055 5678563 Clos_1457 Alkaliphilus oremlandii OhILAs Beta-ketoacyl synthase YP_001512997.1 1563817 D 350688 CDS YP_001512998.1 158320491 5678564 1565406..1566131 1 NC_009922.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1566131 rnc 5678564 rnc Alkaliphilus oremlandii OhILAs ribonuclease III YP_001512998.1 1565406 D 350688 CDS YP_001512999.1 158320492 5678565 1566118..1567146 1 NC_009922.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cdf:CD1249 radical SAM-superfamily protein; radical SAM domain-containing protein 1567146 5678565 Clos_1459 Alkaliphilus oremlandii OhILAs radical SAM domain-containing protein YP_001512999.1 1566118 D 350688 CDS YP_001513000.1 158320493 5678566 1567219..1570803 1 NC_009922.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: cth:Cthe_0927 chromosome segregation protein SMC; chromosome segregation protein SMC 1570803 5678566 Clos_1460 Alkaliphilus oremlandii OhILAs chromosome segregation protein SMC YP_001513000.1 1567219 D 350688 CDS YP_001513001.1 158320494 5678567 1570814..1572109 1 NC_009922.1 KEGG: cdf:CD1251 putative signal recognition particle; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY 1572109 5678567 Clos_1461 Alkaliphilus oremlandii OhILAs signal recognition particle-docking protein FtsY YP_001513001.1 1570814 D 350688 CDS YP_001513002.1 158320495 5678568 1572198..1572563 1 NC_009922.1 PFAM: Bacterio-opsin activator HTH domain protein; putative helix-turn-helix protein YlxM/p13 family protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cdf:CD1251A hypothetical protein; putative helix-turn-helix protein YlxM/p13 family protein 1572563 5678568 Clos_1462 Alkaliphilus oremlandii OhILAs putative helix-turn-helix protein YlxM/p13 family protein YP_001513002.1 1572198 D 350688 CDS YP_001513003.1 158320496 5678569 1572586..1573932 1 NC_009922.1 KEGG: cth:Cthe_0770 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein 1573932 5678569 Clos_1463 Alkaliphilus oremlandii OhILAs signal recognition particle protein YP_001513003.1 1572586 D 350688 CDS YP_001513004.1 158320497 5678570 1573969..1574214 1 NC_009922.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1574214 rpsP 5678570 rpsP Alkaliphilus oremlandii OhILAs 30S ribosomal protein S16 YP_001513004.1 1573969 D 350688 CDS YP_001513005.1 158320498 5678571 1574236..1574466 1 NC_009922.1 KEGG: csc:Csac_2156 RNA-binding protein (contains KH domain)-like protein; RNA-binding protein 1574466 5678571 Clos_1465 Alkaliphilus oremlandii OhILAs RNA-binding protein YP_001513005.1 1574236 D 350688 CDS YP_001513006.1 158320499 5678572 1574644..1575147 1 NC_009922.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1575147 rimM 5678572 rimM Alkaliphilus oremlandii OhILAs 16S rRNA-processing protein RimM YP_001513006.1 1574644 D 350688 CDS YP_001513007.1 158320500 5678573 1575144..1575893 1 NC_009922.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1575893 trmD 5678573 trmD Alkaliphilus oremlandii OhILAs tRNA (guanine-N(1)-)-methyltransferase YP_001513007.1 1575144 D 350688 CDS YP_001513008.1 158320501 5678574 1576007..1576354 1 NC_009922.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1576354 rplS 5678574 rplS Alkaliphilus oremlandii OhILAs 50S ribosomal protein L19 YP_001513008.1 1576007 D 350688 CDS YP_001513009.1 158320502 5678575 1576426..1577268 1 NC_009922.1 PFAM: GTP-binding protein HSR1-related; KEGG: cdf:CD1258 putative GTPase; GTP-binding protein HSR1-related 1577268 5678575 Clos_1469 Alkaliphilus oremlandii OhILAs GTP-binding protein HSR1-related YP_001513009.1 1576426 D 350688 CDS YP_001513010.1 158320503 5678576 1577297..1577908 1 NC_009922.1 PFAM: ribonuclease HII/HIII; KEGG: spi:MGAS10750_Spy1032 ribonuclease HII; ribonuclease H 1577908 5678576 Clos_1470 Alkaliphilus oremlandii OhILAs ribonuclease H YP_001513010.1 1577297 D 350688 CDS YP_001513011.1 158320504 5678577 1577935..1578288 1 NC_009922.1 PFAM: protein of unknown function UPF0102; KEGG: tte:TTE1452 predicted endonuclease distantly related to archaeal Holliday junction resolvase; hypothetical protein 1578288 5678577 Clos_1471 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513011.1 1577935 D 350688 CDS YP_001513012.1 158320505 5678578 1578435..1579958 1 NC_009922.1 KEGG: tte:TTE1455 predicted ATPase with chaperone activity; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Mg chelatase subunit ChlI 1579958 5678578 Clos_1472 Alkaliphilus oremlandii OhILAs Mg chelatase subunit ChlI YP_001513012.1 1578435 D 350688 CDS YP_001513013.1 158320506 5678579 1579980..1581077 1 NC_009922.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: tte:TTE1450 predicted Rossmann-fold nucleotide-binding protein involved in DNA uptake; DNA protecting protein DprA 1581077 5678579 Clos_1473 Alkaliphilus oremlandii OhILAs DNA protecting protein DprA YP_001513013.1 1579980 D 350688 CDS YP_001513014.1 158320507 5678580 1581150..1583228 1 NC_009922.1 KEGG: cdf:CD1274 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase I 1583228 5678580 Clos_1474 Alkaliphilus oremlandii OhILAs DNA topoisomerase I YP_001513014.1 1581150 D 350688 CDS YP_001513015.1 158320508 5678581 1583416..1584195 1 NC_009922.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 1584195 5678581 Clos_1475 Alkaliphilus oremlandii OhILAs transcriptional repressor CodY YP_001513015.1 1583416 D 350688 CDS YP_001513016.1 158320509 5676494 1584638..1585033 1 NC_009922.1 TIGRFAM: flagellar basal-body rod protein FlgB; PFAM: flagellar basal body rod protein; KEGG: tte:TTE1445 flagellar basal body protein; flagellar basal-body rod protein FlgB 1585033 5676494 Clos_1476 Alkaliphilus oremlandii OhILAs flagellar basal-body rod protein FlgB YP_001513016.1 1584638 D 350688 CDS YP_001513017.1 158320510 5676495 1585039..1585482 1 NC_009922.1 TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_0463 flagellar basal-body rod protein FlgC; flagellar basal-body rod protein FlgC 1585482 5676495 Clos_1477 Alkaliphilus oremlandii OhILAs flagellar basal-body rod protein FlgC YP_001513017.1 1585039 D 350688 CDS YP_001513018.1 158320511 5676496 1585497..1585796 1 NC_009922.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 1585796 fliE 5676496 fliE Alkaliphilus oremlandii OhILAs flagellar hook-basal body protein FliE YP_001513018.1 1585497 D 350688 CDS YP_001513019.1 158320512 5676497 1585821..1587368 1 NC_009922.1 TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: tte:TTE1442 flagellar biosynthesis/type III secretory pathway lipoprotein; flagellar M-ring protein FliF 1587368 5676497 Clos_1479 Alkaliphilus oremlandii OhILAs flagellar M-ring protein FliF YP_001513019.1 1585821 D 350688 CDS YP_001513020.1 158320513 5676498 1587379..1588398 1 NC_009922.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1588398 fliG 5676498 fliG Alkaliphilus oremlandii OhILAs flagellar motor switch protein G YP_001513020.1 1587379 D 350688 CDS YP_001513021.1 158320514 5676499 1588391..1589200 1 NC_009922.1 PFAM: flagellar assembly protein FliH; KEGG: tte:TTE1440 flagellar biosynthesis/type III secretory pathway protein; flagellar assembly protein FliH 1589200 5676499 Clos_1481 Alkaliphilus oremlandii OhILAs flagellar assembly protein FliH YP_001513021.1 1588391 D 350688 CDS YP_001513022.1 158320515 5676500 1589205..1590518 1 NC_009922.1 KEGG: cth:Cthe_0468 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; type III secretion apparatus H+-transporting two-sector ATPase; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; flagellar protein export ATPase FliI 1590518 5676500 Clos_1482 Alkaliphilus oremlandii OhILAs flagellar protein export ATPase FliI YP_001513022.1 1589205 D 350688 CDS YP_001513023.1 158320516 5676501 1590531..1590971 1 NC_009922.1 TIGRFAM: flagellar export protein FliJ; KEGG: cth:Cthe_0469 flagellar export protein FliJ; flagellar export protein FliJ 1590971 5676501 Clos_1483 Alkaliphilus oremlandii OhILAs flagellar export protein FliJ YP_001513023.1 1590531 D 350688 CDS YP_001513024.1 158320517 5676502 1590983..1592218 1 NC_009922.1 KEGG: ehi:388.t00006 hypothetical protein Pfam: PH DUF1090 MAP7 DUF904 DUF1410 UVR PROSITE: GLU_RICH LYS_RICH PH_DOMAIN; hypothetical protein 1592218 5676502 Clos_1484 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513024.1 1590983 D 350688 CDS YP_001513025.1 158320518 5676503 1592245..1593702 1 NC_009922.1 PFAM: flagellar hook-length control protein; KEGG: cth:Cthe_0471 flagellar hook-length control protein; flagellar hook-length control protein 1593702 5676503 Clos_1485 Alkaliphilus oremlandii OhILAs flagellar hook-length control protein YP_001513025.1 1592245 D 350688 CDS YP_001513026.1 158320519 5676147 1593713..1594138 1 NC_009922.1 PFAM: flagellar hook capping protein; KEGG: dvl:Dvul_1635 flagellar hook capping protein; flagellar hook capping protein 1594138 5676147 Clos_1486 Alkaliphilus oremlandii OhILAs flagellar hook capping protein YP_001513026.1 1593713 D 350688 CDS YP_001513027.1 158320520 5676148 1594168..1594554 1 NC_009922.1 TIGRFAM: flagellar operon protein; KEGG: cth:Cthe_0473 flagellar operon protein; flagellar operon protein 1594554 5676148 Clos_1487 Alkaliphilus oremlandii OhILAs flagellar operon protein YP_001513027.1 1594168 D 350688 CDS YP_001513028.1 158320521 5676149 1594635..1595981 1 NC_009922.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: cth:Cthe_0474 protein of unknown function DUF1078-like protein; hypothetical protein 1595981 5676149 Clos_1488 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513028.1 1594635 D 350688 CDS YP_001513029.1 158320522 5676150 1596044..1596259 1 NC_009922.1 PFAM: flagellar FlbD family protein; KEGG: tte:TTE1432 uncharacterized protein, possibly involved in motility; flagellar FlbD family protein 1596259 5676150 Clos_1489 Alkaliphilus oremlandii OhILAs flagellar FlbD family protein YP_001513029.1 1596044 D 350688 CDS YP_001513030.1 158320523 5676151 1596293..1597078 1 NC_009922.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3589 chemotaxis protein MotA; MotA/TolQ/ExbB proton channel 1597078 5676151 Clos_1490 Alkaliphilus oremlandii OhILAs MotA/TolQ/ExbB proton channel YP_001513030.1 1596293 D 350688 CDS YP_001513031.1 158320524 5676152 1597078..1597842 1 NC_009922.1 PFAM: OmpA/MotB domain protein; KEGG: mta:Moth_0782 OmpA/MotB; OmpA/MotB domain-containing protein 1597842 5676152 Clos_1491 Alkaliphilus oremlandii OhILAs OmpA/MotB domain-containing protein YP_001513031.1 1597078 D 350688 CDS YP_001513032.1 158320525 5676153 1597865..1598290 1 NC_009922.1 PFAM: flagellar basal body-associated protein FliL; KEGG: tte:TTE1431 flagellar basal body-associated protein; flagellar basal body-associated protein FliL 1598290 5676153 Clos_1492 Alkaliphilus oremlandii OhILAs flagellar basal body-associated protein FliL YP_001513032.1 1597865 D 350688 CDS YP_001513033.1 158320526 5676155 1599293..1600450 1 NC_009922.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1600450 5676155 Clos_1494 Alkaliphilus oremlandii OhILAs flagellar motor switch protein YP_001513033.1 1599293 D 350688 CDS YP_001513034.1 158320527 5676156 1600540..1600902 1 NC_009922.1 PFAM: response regulator receiver; KEGG: csc:Csac_1271 response regulator receiver protein; response regulator receiver protein 1600902 5676156 Clos_1495 Alkaliphilus oremlandii OhILAs response regulator receiver protein YP_001513034.1 1600540 D 350688 CDS YP_001513035.1 158320528 5677535 1600904..1601248 1 NC_009922.1 KEGG: amt:Amet_2708 hypothetical protein; hypothetical protein 1601248 5677535 Clos_1496 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513035.1 1600904 D 350688 CDS YP_001513036.1 158320529 5677536 1601296..1602105 1 NC_009922.1 KEGG: amt:Amet_2707 flagellar biosynthetic protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; flagellar biosynthetic protein FliP 1602105 5677536 Clos_1497 Alkaliphilus oremlandii OhILAs flagellar biosynthetic protein FliP YP_001513036.1 1601296 D 350688 CDS YP_001513037.1 158320530 5677537 1602116..1602385 1 NC_009922.1 TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: amt:Amet_2706 flagellar biosynthetic protein FliQ; flagellar biosynthetic protein FliQ 1602385 5677537 Clos_1498 Alkaliphilus oremlandii OhILAs flagellar biosynthetic protein FliQ YP_001513037.1 1602116 D 350688 CDS YP_001513038.1 158320531 5677538 1602398..1603186 1 NC_009922.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1603186 fliR 5677538 fliR Alkaliphilus oremlandii OhILAs flagellar biosynthesis protein FliR YP_001513038.1 1602398 D 350688 CDS YP_001513039.1 158320532 5677539 1603197..1604285 1 NC_009922.1 TIGRFAM: flagellar biosynthetic protein FlhB; PFAM: type III secretion exporter; KEGG: amt:Amet_2704 flagellar biosynthetic protein FlhB; flagellar biosynthetic protein FlhB 1604285 5677539 Clos_1500 Alkaliphilus oremlandii OhILAs flagellar biosynthetic protein FlhB YP_001513039.1 1603197 D 350688 CDS YP_001513040.1 158320533 5677540 1604296..1606323 1 NC_009922.1 TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: amt:Amet_2703 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA 1606323 5677540 Clos_1501 Alkaliphilus oremlandii OhILAs flagellar biosynthesis protein FlhA YP_001513040.1 1604296 D 350688 CDS YP_001513041.1 158320534 5677541 1606324..1607553 1 NC_009922.1 PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; KEGG: amt:Amet_2702 GTP-binding signal recognition particle SRP54, G-domain; GTP-binding signal recognition particle 1607553 5677541 Clos_1502 Alkaliphilus oremlandii OhILAs GTP-binding signal recognition particle YP_001513041.1 1606324 D 350688 CDS YP_001513042.1 158320535 5677542 1607555..1608457 1 NC_009922.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: amt:Amet_2701 cobyrinic acid a,c-diamide synthase; cobyrinic acid ac-diamide synthase 1608457 5677542 Clos_1503 Alkaliphilus oremlandii OhILAs cobyrinic acid ac-diamide synthase YP_001513042.1 1607555 D 350688 CDS YP_001513043.1 158320536 5677543 1608467..1609123 1 NC_009922.1 PFAM: type IV pilus assembly PilZ; KEGG: amt:Amet_2700 type IV pilus assembly PilZ; type IV pilus assembly PilZ 1609123 5677543 Clos_1504 Alkaliphilus oremlandii OhILAs type IV pilus assembly PilZ YP_001513043.1 1608467 D 350688 CDS YP_001513044.1 158320537 5677544 1609125..1610201 1 NC_009922.1 PFAM: CheB methylesterase; response regulator receiver; KEGG: amt:Amet_2699 response regulator receiver modulated CheB methylesterase; response regulator receiver modulated CheB methylesterase 1610201 5677544 Clos_1505 Alkaliphilus oremlandii OhILAs response regulator receiver modulated CheB methylesterase YP_001513044.1 1609125 D 350688 CDS YP_001513045.1 158320538 5675989 1610207..1612285 1 NC_009922.1 PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: cth:Cthe_0490 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase 1612285 5675989 Clos_1506 Alkaliphilus oremlandii OhILAs CheA signal transduction histidine kinase YP_001513045.1 1610207 D 350688 CDS YP_001513046.1 158320539 5675990 1612324..1612761 1 NC_009922.1 PFAM: CheW domain protein; KEGG: cth:Cthe_0491 CheW protein; CheW protein 1612761 5675990 Clos_1507 Alkaliphilus oremlandii OhILAs CheW protein YP_001513046.1 1612324 D 350688 CDS YP_001513047.1 158320540 5675991 1612774..1613391 1 NC_009922.1 PFAM: CheC domain protein; KEGG: cth:Cthe_0492 CheC, inhibitor of MCP methylation; CheC, inhibitor of MCP methylation 1613391 5675991 Clos_1508 Alkaliphilus oremlandii OhILAs CheC, inhibitor of MCP methylation YP_001513047.1 1612774 D 350688 CDS YP_001513048.1 158320541 5675992 1613392..1613877 1 NC_009922.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 1613877 5675992 Clos_1509 Alkaliphilus oremlandii OhILAs chemoreceptor glutamine deamidase CheD YP_001513048.1 1613392 D 350688 CDS YP_001513049.1 158320542 5675993 1613919..1614656 1 NC_009922.1 KEGG: lbl:LBL_1838 RNA polymerase sigma subunit; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma-70; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; RNA polymerase sigma 28 subunit FliA/WhiG 1614656 5675993 Clos_1510 Alkaliphilus oremlandii OhILAs RNA polymerase sigma 28 subunit FliA/WhiG YP_001513049.1 1613919 D 350688 CDS YP_001513050.1 158320543 5675994 1614669..1616477 1 NC_009922.1 PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 protein of unknown function DUF342; hypothetical protein 1616477 5675994 Clos_1511 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513050.1 1614669 D 350688 CDS YP_001513051.1 158320544 5675995 1616538..1616984 1 NC_009922.1 hypothetical protein 1616984 5675995 Clos_1512 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513051.1 1616538 D 350688 CDS YP_001513052.1 158320545 5675996 1617136..1617834 1 NC_009922.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1617834 rpsB 5675996 rpsB Alkaliphilus oremlandii OhILAs 30S ribosomal protein S2 YP_001513052.1 1617136 D 350688 CDS YP_001513053.1 158320546 5675997 1617923..1618573 1 NC_009922.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1618573 tsf 5675997 tsf Alkaliphilus oremlandii OhILAs elongation factor Ts YP_001513053.1 1617923 D 350688 CDS YP_001513054.1 158320547 5675998 1618703..1619413 1 NC_009922.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1619413 pyrH 5675998 pyrH Alkaliphilus oremlandii OhILAs uridylate kinase YP_001513054.1 1618703 D 350688 CDS YP_001513055.1 158320548 5676956 1619442..1619999 1 NC_009922.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1619999 frr 5676956 frr Alkaliphilus oremlandii OhILAs ribosome recycling factor YP_001513055.1 1619442 D 350688 CDS YP_001513056.1 158320549 5676957 1620231..1620986 1 NC_009922.1 KEGG: cno:NT01CX_2145 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 1620986 5676957 Clos_1517 Alkaliphilus oremlandii OhILAs undecaprenyl diphosphate synthase YP_001513056.1 1620231 D 350688 CDS YP_001513057.1 158320550 5676958 1620997..1621785 1 NC_009922.1 PFAM: phosphatidate cytidylyltransferase; KEGG: tte:TTE1403 CDP-diglyceride synthetase; phosphatidate cytidylyltransferase 1621785 5676958 Clos_1518 Alkaliphilus oremlandii OhILAs phosphatidate cytidylyltransferase YP_001513057.1 1620997 D 350688 CDS YP_001513058.1 158320551 5676959 1621835..1622980 1 NC_009922.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1622980 5676959 Clos_1519 Alkaliphilus oremlandii OhILAs 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_001513058.1 1621835 D 350688 CDS YP_001513059.1 158320552 5676960 1622993..1623997 1 NC_009922.1 KEGG: cdf:CD2129 putative membrane-associated protease; TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; putative membrane-associated zinc metalloprotease 1623997 5676960 Clos_1520 Alkaliphilus oremlandii OhILAs putative membrane-associated zinc metalloprotease YP_001513059.1 1622993 D 350688 CDS YP_001513060.1 158320553 5676961 1624067..1625113 1 NC_009922.1 KEGG: cdf:CD2128 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 1625113 5676961 Clos_1521 Alkaliphilus oremlandii OhILAs 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_001513060.1 1624067 D 350688 CDS YP_001513061.1 158320554 5676962 1625127..1625759 1 NC_009922.1 PFAM: glycosyl transferase family 2; KEGG: tte:TTE1399 glycosyltransferase involved in cell wall biogenesis; glycosyl transferase family protein 1625759 5676962 Clos_1522 Alkaliphilus oremlandii OhILAs glycosyl transferase family protein YP_001513061.1 1625127 D 350688 CDS YP_001513062.1 158320555 5676963 1625782..1630107 1 NC_009922.1 KEGG: cth:Cthe_0996 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, epsilon subunit; DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; Exonuclease RNase T and DNA polymerase III; SMART: phosphoesterase PHP domain protein; Exonuclease; DNA polymerase III subunit alpha 1630107 5676963 Clos_1523 Alkaliphilus oremlandii OhILAs DNA polymerase III subunit alpha YP_001513062.1 1625782 D 350688 CDS YP_001513063.1 158320556 5676964 1630339..1630803 1 NC_009922.1 PFAM: protein of unknown function DUF150; KEGG: cth:Cthe_0995 protein of unknown function DUF150; hypothetical protein 1630803 5676964 Clos_1524 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513063.1 1630339 D 350688 CDS YP_001513064.1 158320557 5676965 1630818..1631855 1 NC_009922.1 KEGG: drm:Dred_1960 NusA antitermination factor; TIGRFAM: transcription termination factor NusA; PFAM: RNA binding S1 domain protein; NusA domain protein; SMART: KH domain protein; NusA antitermination factor 1631855 5676965 Clos_1525 Alkaliphilus oremlandii OhILAs NusA antitermination factor YP_001513064.1 1630818 D 350688 CDS YP_001513065.1 158320558 5677564 1631870..1632139 1 NC_009922.1 PFAM: protein of unknown function DUF448; KEGG: cth:Cthe_0993 protein of unknown function DUF448; hypothetical protein 1632139 5677564 Clos_1526 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513065.1 1631870 D 350688 CDS YP_001513066.1 158320559 5677565 1632132..1632428 1 NC_009922.1 PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: cdf:CD1308 putative ribosomal protein; ribosomal protein L7Ae/L30e/S12e/Gadd45 1632428 5677565 Clos_1527 Alkaliphilus oremlandii OhILAs ribosomal protein L7Ae/L30e/S12e/Gadd45 YP_001513066.1 1632132 D 350688 CDS YP_001513067.1 158320560 5677566 1632454..1634613 1 NC_009922.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1634613 infB 5677566 infB Alkaliphilus oremlandii OhILAs translation initiation factor IF-2 YP_001513067.1 1632454 D 350688 CDS YP_001513068.1 158320561 5677567 1634632..1635030 1 NC_009922.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1635030 rbfA 5677567 rbfA Alkaliphilus oremlandii OhILAs ribosome-binding factor A YP_001513068.1 1634632 D 350688 CDS YP_001513069.1 158320562 5677568 1635023..1635985 1 NC_009922.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cth:Cthe_0989 phosphoesterase, RecJ-like protein; phosphoesterase domain-containing protein 1635985 5677568 Clos_1530 Alkaliphilus oremlandii OhILAs phosphoesterase domain-containing protein YP_001513069.1 1635023 D 350688 CDS YP_001513070.1 158320563 5677569 1635991..1636890 1 NC_009922.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1636890 truB 5677569 truB Alkaliphilus oremlandii OhILAs tRNA pseudouridine synthase B YP_001513070.1 1635991 D 350688 CDS YP_001513071.1 158320564 5677570 1636893..1637816 1 NC_009922.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; KEGG: cth:Cthe_0987 riboflavin biosynthesis protein RibF; riboflavin biosynthesis protein RibF 1637816 5677570 Clos_1532 Alkaliphilus oremlandii OhILAs riboflavin biosynthesis protein RibF YP_001513071.1 1636893 D 350688 CDS YP_001513072.1 158320565 5677571 1637920..1638183 1 NC_009922.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1638183 rpsO 5677571 rpsO Alkaliphilus oremlandii OhILAs 30S ribosomal protein S15 YP_001513072.1 1637920 D 350688 CDS YP_001513073.1 158320566 5677572 1638320..1640440 1 NC_009922.1 KEGG: cdf:CD1318 polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH type 1 domain protein; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 1640440 5677572 Clos_1534 Alkaliphilus oremlandii OhILAs polynucleotide phosphorylase/polyadenylase YP_001513073.1 1638320 D 350688 CDS YP_001513074.1 158320567 5677573 1640553..1641284 1 NC_009922.1 PFAM: polysaccharide deacetylase; KEGG: tte:TTE1386 predicted xylanase/chitin deacetylase; polysaccharide deacetylase 1641284 5677573 Clos_1535 Alkaliphilus oremlandii OhILAs polysaccharide deacetylase YP_001513074.1 1640553 D 350688 CDS YP_001513075.1 158320568 5677391 1641359..1642597 1 NC_009922.1 PFAM: peptidase M16 domain protein; KEGG: cth:Cthe_0419 peptidase M16-like protein; peptidase M16 domain-containing protein 1642597 5677391 Clos_1536 Alkaliphilus oremlandii OhILAs peptidase M16 domain-containing protein YP_001513075.1 1641359 D 350688 CDS YP_001513076.1 158320569 5677392 1642716..1642973 1 NC_009922.1 TIGRFAM: Sporulation protein YlmC/YmxH; PFAM: PRC-barrel domain protein; KEGG: tte:TTE1383 hypothetical protein; sporulation protein YlmC/YmxH 1642973 5677392 Clos_1537 Alkaliphilus oremlandii OhILAs sporulation protein YlmC/YmxH YP_001513076.1 1642716 D 350688 CDS YP_001513077.1 158320570 5677393 1643054..1643791 1 NC_009922.1 PFAM: peptidase S14 ClpP; KEGG: tte:TTE1381 protease subunit of ATP-dependent Clp protease; peptidase S14 ClpP 1643791 5677393 Clos_1538 Alkaliphilus oremlandii OhILAs peptidase S14 ClpP YP_001513077.1 1643054 D 350688 CDS YP_001513078.1 158320571 5677394 1644013..1646328 1 NC_009922.1 PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: cdf:CD1324 putative DNA translocase; cell division protein FtsK 1646328 5677394 Clos_1539 Alkaliphilus oremlandii OhILAs cell division protein FtsK YP_001513078.1 1644013 D 350688 CDS YP_001513079.1 158320572 5677395 1646377..1647426 1 NC_009922.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 1647426 5677395 Clos_1540 Alkaliphilus oremlandii OhILAs tRNA 2-selenouridine synthase YP_001513079.1 1646377 D 350688 CDS YP_001513080.1 158320573 5677396 1647483..1648019 1 NC_009922.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: tte:TTE1376 Phosphatidylglycerophosphate synthase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1648019 5677396 Clos_1541 Alkaliphilus oremlandii OhILAs CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001513080.1 1647483 D 350688 CDS YP_001513081.1 158320574 5677397 1648151..1649209 1 NC_009922.1 KEGG: cth:Cthe_1050 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein 1649209 5677397 Clos_1542 Alkaliphilus oremlandii OhILAs recA protein YP_001513081.1 1648151 D 350688 CDS YP_001513082.1 158320575 5677398 1649565..1651112 1 NC_009922.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1651112 5677398 Clos_1543 Alkaliphilus oremlandii OhILAs phosphodiesterase YP_001513082.1 1649565 D 350688 CDS YP_001513083.1 158320576 5677399 1651305..1651565 1 NC_009922.1 PFAM: Stage V sporulation protein S; KEGG: gtn:GTNG_1153 stage V sporulation protein S; stage V sporulation protein S 1651565 5677399 Clos_1544 Alkaliphilus oremlandii OhILAs stage V sporulation protein S YP_001513083.1 1651305 D 350688 CDS YP_001513084.1 158320577 5677400 1651710..1652537 1 NC_009922.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: tte:TTE1369 predicted metal-dependent phosphoesterases (PHP family); phosphotransferase domain-containing protein 1652537 5677400 Clos_1545 Alkaliphilus oremlandii OhILAs phosphotransferase domain-containing protein YP_001513084.1 1651710 D 350688 CDS YP_001513085.1 158320578 5677995 1652645..1653838 1 NC_009922.1 PFAM: aminotransferase class I and II; KEGG: tte:TTE1368 PLP-dependent aminotransferases; class I and II aminotransferase 1653838 5677995 Clos_1546 Alkaliphilus oremlandii OhILAs class I and II aminotransferase YP_001513085.1 1652645 D 350688 CDS YP_001513086.1 158320579 5677996 complement(1653976..1655598) 1 NC_009922.1 PFAM: S-layer domain protein; glycoside hydrolase family 18; SMART: chitinase II; KEGG: bsu:BG13319 similar to chitinase; glycoside hydrolase family protein 1655598 5677996 Clos_1547 Alkaliphilus oremlandii OhILAs glycoside hydrolase family protein YP_001513086.1 1653976 R 350688 CDS YP_001513087.1 158320580 5677997 1656210..1657427 1 NC_009922.1 PFAM: integrase family protein; KEGG: cdf:CD1932 putative tyrosine recombinase; integrase family protein 1657427 5677997 Clos_1548 Alkaliphilus oremlandii OhILAs integrase family protein YP_001513087.1 1656210 D 350688 CDS YP_001513088.1 158320581 5677998 1657511..1658131 1 NC_009922.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 1658131 5677998 Clos_1549 Alkaliphilus oremlandii OhILAs LexA repressor YP_001513088.1 1657511 D 350688 CDS YP_001513089.1 158320582 5677999 complement(1658197..1659465) 1 NC_009922.1 PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; Aluminium resistance family protein; KEGG: cdf:CD1973 hypothetical protein; aluminium resistance family protein 1659465 5677999 Clos_1550 Alkaliphilus oremlandii OhILAs aluminium resistance family protein YP_001513089.1 1658197 R 350688 CDS YP_001513090.1 158320583 5678000 complement(1659629..1659871) 1 NC_009922.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: chy:CHY_1393 hfq protein; RNA chaperone Hfq 1659871 5678000 Clos_1551 Alkaliphilus oremlandii OhILAs RNA chaperone Hfq YP_001513090.1 1659629 R 350688 CDS YP_001513091.1 158320584 5678001 complement(1659913..1660854) 1 NC_009922.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1660854 miaA 5678001 miaA Alkaliphilus oremlandii OhILAs tRNA delta(2)-isopentenylpyrophosphate transferase YP_001513091.1 1659913 R 350688 CDS YP_001513092.1 158320585 5678002 complement(1660866..1662716) 1 NC_009922.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1662716 mutL 5678002 mutL Alkaliphilus oremlandii OhILAs DNA mismatch repair protein YP_001513092.1 1660866 R 350688 CDS YP_001513093.1 158320586 5678003 complement(1662728..1665352) 1 NC_009922.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1665352 5678003 Clos_1554 Alkaliphilus oremlandii OhILAs DNA mismatch repair protein MutS YP_001513093.1 1662728 R 350688 CDS YP_001513094.1 158320587 5678004 complement(1665537..1666952) 1 NC_009922.1 KEGG: cdf:CD1986 putative radical SAM protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB; tRNA-i(6)A37 thiotransferase enzyme MiaB 1666952 5678004 Clos_1555 Alkaliphilus oremlandii OhILAs tRNA-i(6)A37 thiotransferase enzyme MiaB YP_001513094.1 1665537 R 350688 CDS YP_001513095.1 158320588 5677657 complement(1667037..1667666) 1 NC_009922.1 PFAM: regulatory protein MerR; KEGG: cth:Cthe_0804 transcriptional regulator, MerR family; MerR family transcriptional regulator 1667666 5677657 Clos_1556 Alkaliphilus oremlandii OhILAs MerR family transcriptional regulator YP_001513095.1 1667037 R 350688 CDS YP_001513096.1 158320589 5677658 complement(1667832..1668827) 1 NC_009922.1 PFAM: peptidase M20; peptidase M42 family protein; KEGG: tte:TTE0443 Cellulase M and related proteins; peptidase M42 family protein 1668827 5677658 Clos_1557 Alkaliphilus oremlandii OhILAs peptidase M42 family protein YP_001513096.1 1667832 R 350688 CDS YP_001513097.1 158320590 5677659 complement(1668827..1669849) 1 NC_009922.1 PFAM: peptidase M18 aminopeptidase I; peptidase M42 family protein; KEGG: tte:TTE0442 Cellulase M and related proteins; peptidase M42 family protein 1669849 5677659 Clos_1558 Alkaliphilus oremlandii OhILAs peptidase M42 family protein YP_001513097.1 1668827 R 350688 CDS YP_001513098.1 158320591 5677660 complement(1669840..1670892) 1 NC_009922.1 PFAM: peptidase M18 aminopeptidase I; peptidase M20; peptidase M42 family protein; KEGG: tte:TTE0441 Cellulase M and related proteins; peptidase M42 family protein 1670892 5677660 Clos_1559 Alkaliphilus oremlandii OhILAs peptidase M42 family protein YP_001513098.1 1669840 R 350688 CDS YP_001513099.1 158320592 5677661 complement(1670905..1671678) 1 NC_009922.1 PFAM: MCP methyltransferase CheR-type; KEGG: cth:Cthe_0717 MCP methyltransferase, CheR-type; chemotaxis protein CheR 1671678 5677661 Clos_1560 Alkaliphilus oremlandii OhILAs chemotaxis protein CheR YP_001513099.1 1670905 R 350688 CDS YP_001513100.1 158320593 5677662 complement(1671773..1672909) 1 NC_009922.1 PFAM: RNA binding S1 domain protein; KEGG: cbo:CBO1159 30S ribosomal protein S1; RNA-binding S1 domain-containing protein 1672909 5677662 Clos_1561 Alkaliphilus oremlandii OhILAs RNA-binding S1 domain-containing protein YP_001513100.1 1671773 R 350688 CDS YP_001513101.1 158320594 5677663 complement(1672933..1673772) 1 NC_009922.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1673772 5677663 Clos_1562 Alkaliphilus oremlandii OhILAs 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_001513101.1 1672933 R 350688 CDS YP_001513102.1 158320595 5677664 complement(1673927..1674535) 1 NC_009922.1 TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; KEGG: tte:TTE1351 1-acyl-sn-glycerol-3-phosphate acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 1674535 5677664 Clos_1563 Alkaliphilus oremlandii OhILAs 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_001513102.1 1673927 R 350688 CDS YP_001513103.1 158320596 5677665 complement(1674538..1675191) 1 NC_009922.1 KEGG: cdf:CD1816 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; cytidylate kinase 1675191 5677665 Clos_1564 Alkaliphilus oremlandii OhILAs cytidylate kinase YP_001513103.1 1674538 R 350688 CDS YP_001513104.1 158320597 5677666 complement(1675233..1675601) 1 NC_009922.1 TIGRFAM: chorismate mutase; PFAM: Chorismate mutase of the AroH class; KEGG: cth:Cthe_0711 chorismate mutase; chorismate mutase 1675601 5677666 Clos_1565 Alkaliphilus oremlandii OhILAs chorismate mutase YP_001513104.1 1675233 R 350688 CDS YP_001513105.1 158320598 5678397 complement(1675698..1676927) 1 NC_009922.1 PFAM: glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cth:Cthe_0708 FAD dependent oxidoreductase; hypothetical protein 1676927 5678397 Clos_1566 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513105.1 1675698 R 350688 CDS YP_001513106.1 158320599 5678398 complement(1676933..1677535) 1 NC_009922.1 PFAM: Phosphoglycerate mutase; KEGG: cdf:CD1814 putative phosphoglycerate mutase; phosphoglycerate mutase 1677535 5678398 Clos_1567 Alkaliphilus oremlandii OhILAs phosphoglycerate mutase YP_001513106.1 1676933 R 350688 CDS YP_001513107.1 158320600 5678399 complement(1677732..1678607) 1 NC_009922.1 PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: cbo:CBO1812 RpiR-family transcriptional regulator; RpiR family transcriptional regulator 1678607 5678399 Clos_1568 Alkaliphilus oremlandii OhILAs RpiR family transcriptional regulator YP_001513107.1 1677732 R 350688 CDS YP_001513108.1 158320601 5678400 complement(1678632..1679165) 1 NC_009922.1 KEGG: tte:TTE1211 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit; TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate/ketoisovalerate oxidoreductase subunit gamma 1679165 5678400 Clos_1569 Alkaliphilus oremlandii OhILAs pyruvate/ketoisovalerate oxidoreductase subunit gamma YP_001513108.1 1678632 R 350688 CDS YP_001513109.1 158320602 5678401 complement(1679170..1679988) 1 NC_009922.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 1679988 5678401 Clos_1570 Alkaliphilus oremlandii OhILAs 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_001513109.1 1679170 R 350688 CDS YP_001513110.1 158320603 5678402 complement(1679990..1681129) 1 NC_009922.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: pth:PTH_0847 pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 1681129 5678402 Clos_1571 Alkaliphilus oremlandii OhILAs pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_001513110.1 1679990 R 350688 CDS YP_001513111.1 158320604 5678403 complement(1681119..1681331) 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tte:TTE1339 ferredoxin 2; 4Fe-4S ferredoxin 1681331 5678403 Clos_1572 Alkaliphilus oremlandii OhILAs 4Fe-4S ferredoxin YP_001513111.1 1681119 R 350688 CDS YP_001513112.1 158320605 5678404 1681732..1682373 1 NC_009922.1 KEGG: cth:Cthe_0704 hypothetical protein; hypothetical protein 1682373 5678404 Clos_1573 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513112.1 1681732 D 350688 CDS YP_001513113.1 158320606 5678405 complement(1682456..1683853) 1 NC_009922.1 Converts oxaloacetate to phosphoenolpyruvate using ATP as an energy source; oxaloacetate decarboxylase 1683853 5678405 Clos_1574 Alkaliphilus oremlandii OhILAs oxaloacetate decarboxylase YP_001513113.1 1682456 R 350688 CDS YP_001513114.1 158320607 5678406 complement(1683950..1684519) 1 NC_009922.1 PFAM: putative rRNA methylase; KEGG: cno:NT01CX_0339 putative rRNA methylase; putative rRNA methylase 1684519 5678406 Clos_1575 Alkaliphilus oremlandii OhILAs putative rRNA methylase YP_001513114.1 1683950 R 350688 CDS YP_001513115.1 158320608 5678532 complement(1684606..1684971) 1 NC_009922.1 hypothetical protein 1684971 5678532 Clos_1576 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513115.1 1684606 R 350688 CDS YP_001513116.1 158320609 5678533 complement(1685078..1685782) 1 NC_009922.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cno:NT01CX_2092 ribosomal large subunit pseudouridine synthase B; pseudouridine synthase 1685782 5678533 Clos_1577 Alkaliphilus oremlandii OhILAs pseudouridine synthase YP_001513116.1 1685078 R 350688 CDS YP_001513117.1 158320610 5678534 complement(1685813..1687093) 1 NC_009922.1 PFAM: glucose-inhibited division protein A; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; KEGG: cpe:CPE1799 hypothetical protein; glucose-inhibited division protein A 1687093 5678534 Clos_1578 Alkaliphilus oremlandii OhILAs glucose-inhibited division protein A YP_001513117.1 1685813 R 350688 CDS YP_001513118.1 158320611 5678535 complement(1687111..1688037) 1 NC_009922.1 KEGG: tte:TTE1329 hypothetical protein; hypothetical protein 1688037 5678535 Clos_1579 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513118.1 1687111 R 350688 CDS YP_001513119.1 158320612 5678536 complement(1688277..1689392) 1 NC_009922.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: tte:TTE1328 D-alanyl-D-alanine carboxypeptidase; Serine-type D-Ala-D-Ala carboxypeptidase 1689392 5678536 Clos_1580 Alkaliphilus oremlandii OhILAs Serine-type D-Ala-D-Ala carboxypeptidase YP_001513119.1 1688277 R 350688 CDS YP_001513120.1 158320613 5678537 complement(1689520..1689918) 1 NC_009922.1 KEGG: gvi:glr4396 unknown protein; hypothetical protein 1689918 5678537 Clos_1581 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513120.1 1689520 R 350688 CDS YP_001513121.1 158320614 5678538 complement(1690006..1690452) 1 NC_009922.1 TIGRFAM: Sporulation protein YtfJ; KEGG: tte:TTE1327 hypothetical protein; sporulation protein YtfJ 1690452 5678538 Clos_1582 Alkaliphilus oremlandii OhILAs sporulation protein YtfJ YP_001513121.1 1690006 R 350688 CDS YP_001513122.1 158320615 5678539 complement(1690454..1691080) 1 NC_009922.1 KEGG: gtn:GTNG_2692 BH3196-like protein; hypothetical protein 1691080 5678539 Clos_1583 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513122.1 1690454 R 350688 CDS YP_001513123.1 158320616 5678540 1691302..1691841 1 NC_009922.1 PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: cdf:CD1023 putative transcriptional regulator; XRE family transcriptional regulator 1691841 5678540 Clos_1584 Alkaliphilus oremlandii OhILAs XRE family transcriptional regulator YP_001513123.1 1691302 D 350688 CDS YP_001513124.1 158320617 5678541 1691977..1692825 1 NC_009922.1 TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: cpr:CPR_0516 agmatinase; putative agmatinase 1692825 5678541 Clos_1585 Alkaliphilus oremlandii OhILAs putative agmatinase YP_001513124.1 1691977 D 350688 CDS YP_001513125.1 158320618 5676290 complement(1692949..1693506) 1 NC_009922.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: cdf:CD1296 segregation and condensation protein B; segregation and condensation protein B 1693506 5676290 Clos_1586 Alkaliphilus oremlandii OhILAs segregation and condensation protein B YP_001513125.1 1692949 R 350688 CDS YP_001513126.1 158320619 5676291 complement(1693499..1694269) 1 NC_009922.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: cac:CAC2061 segregation and condensation protein A; chromosome segregation and condensation protein ScpA 1694269 5676291 Clos_1587 Alkaliphilus oremlandii OhILAs chromosome segregation and condensation protein ScpA YP_001513126.1 1693499 R 350688 CDS YP_001513127.1 158320620 5676292 complement(1694354..1695514) 1 NC_009922.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: cdf:CD1291 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein); Serine-type D-Ala-D-Ala carboxypeptidase 1695514 5676292 Clos_1588 Alkaliphilus oremlandii OhILAs Serine-type D-Ala-D-Ala carboxypeptidase YP_001513127.1 1694354 R 350688 CDS YP_001513128.1 158320621 5676293 complement(1695723..1697048) 1 NC_009922.1 KEGG: cno:NT01CX_1499 pyrimidine-nucleoside phosphorylase; TIGRFAM: pyrimidine-nucleoside phosphorylase; PFAM: glycosyl transferase family 3; Pyrimidine nucleoside phosphorylase domain; pyrimidine-nucleoside phosphorylase 1697048 5676293 Clos_1589 Alkaliphilus oremlandii OhILAs pyrimidine-nucleoside phosphorylase YP_001513128.1 1695723 R 350688 CDS YP_001513129.1 158320622 5676294 complement(1697048..1697875) 1 NC_009922.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 1697875 5676294 Clos_1590 Alkaliphilus oremlandii OhILAs purine nucleoside phosphorylase YP_001513129.1 1697048 R 350688 CDS YP_001513130.1 158320623 5676295 complement(1697888..1698709) 1 NC_009922.1 TIGRFAM: inosine guanosine and xanthosine phosphorylase family; purine nucleoside phosphorylase I, inosine and guanosine-specific; PFAM: purine phosphorylase family 2; KEGG: btl:BALH_3704 purine-nucleoside phosphorylase; inosine guanosine and xanthosine phosphorylase family protein 1698709 5676295 Clos_1591 Alkaliphilus oremlandii OhILAs inosine guanosine and xanthosine phosphorylase family protein YP_001513130.1 1697888 R 350688 CDS YP_001513131.1 158320624 5676296 complement(1698736..1699908) 1 NC_009922.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 1699908 5676296 Clos_1592 Alkaliphilus oremlandii OhILAs phosphopentomutase YP_001513131.1 1698736 R 350688 CDS YP_001513132.1 158320625 5676297 complement(1700019..1700903) 1 NC_009922.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: cth:Cthe_0676 tyrosine recombinase XerD; tyrosine recombinase XerD 1700903 5676297 Clos_1593 Alkaliphilus oremlandii OhILAs tyrosine recombinase XerD YP_001513132.1 1700019 R 350688 CDS YP_001513133.1 158320626 5676298 complement(1701003..1701647) 1 NC_009922.1 TIGRFAM: Sporulation stage II protein M; PFAM: protein of unknown function DUF95 transmembrane; KEGG: gtn:GTNG_2249 stage II sporulation protein M; sporulation stage II protein M 1701647 5676298 Clos_1594 Alkaliphilus oremlandii OhILAs sporulation stage II protein M YP_001513133.1 1701003 R 350688 CDS YP_001513134.1 158320627 5676299 complement(1701738..1702280) 1 NC_009922.1 PFAM: NUDIX hydrolase; KEGG: tte:TTE1310 NTP pyrophosphohydrolases including oxidative damage repair enzymes; NUDIX hydrolase 1702280 5676299 Clos_1595 Alkaliphilus oremlandii OhILAs NUDIX hydrolase YP_001513134.1 1701738 R 350688 CDS YP_001513135.1 158320628 5677401 complement(1702307..1703395) 1 NC_009922.1 KEGG: drm:Dred_1093 hypothetical protein; hypothetical protein 1703395 5677401 Clos_1596 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513135.1 1702307 R 350688 CDS YP_001513136.1 158320629 5677402 complement(1703424..1704236) 1 NC_009922.1 KEGG: cdf:CD1218 putative glycosyltransferase; putative glycosyltransferase 1704236 5677402 Clos_1597 Alkaliphilus oremlandii OhILAs putative glycosyltransferase YP_001513136.1 1703424 R 350688 CDS YP_001513137.1 158320630 5677403 complement(1704241..1704939) 1 NC_009922.1 PFAM: glycosyl transferase family 2; KEGG: cdf:CD1217 putative glycosyltransferase; glycosyl transferase family protein 1704939 5677403 Clos_1598 Alkaliphilus oremlandii OhILAs glycosyl transferase family protein YP_001513137.1 1704241 R 350688 CDS YP_001513138.1 158320631 5677404 complement(1704932..1705837) 1 NC_009922.1 KEGG: tte:TTE1306 hypothetical protein; hypothetical protein 1705837 5677404 Clos_1599 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513138.1 1704932 R 350688 CDS YP_001513139.1 158320632 5677405 complement(1705862..1706983) 1 NC_009922.1 PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: tte:TTE1305 hypothetical protein; thiamin pyrophosphokinase catalytic region 1706983 5677405 Clos_1600 Alkaliphilus oremlandii OhILAs thiamin pyrophosphokinase catalytic region YP_001513139.1 1705862 R 350688 CDS YP_001513140.1 158320633 5677406 1707120..1707950 1 NC_009922.1 PFAM: regulatory protein RecX; KEGG: bce:BC0498 regulatory protein recX; regulatory protein RecX 1707950 5677406 Clos_1601 Alkaliphilus oremlandii OhILAs regulatory protein RecX YP_001513140.1 1707120 D 350688 CDS YP_001513141.1 158320634 5677407 complement(1708006..1708830) 1 NC_009922.1 TIGRFAM: Sporulation response regulator Spo0A; PFAM: response regulator receiver; Sporulation initiation factor Spo0A; KEGG: cdf:CD1214 stage 0 sporulation protein A; sporulation transcriptional activator Spo0A 1708830 5677407 Clos_1602 Alkaliphilus oremlandii OhILAs sporulation transcriptional activator Spo0A YP_001513141.1 1708006 R 350688 CDS YP_001513142.1 158320635 5677408 complement(1708979..1710277) 1 NC_009922.1 KEGG: tte:TTE1303 sporulation protein IVB; TIGRFAM: Peptidase S55 sporulation stage IV protein B; PFAM: peptidase S55 SpoIVB; SMART: PDZ/DHR/GLGF domain protein; peptidase S55 sporulation stage IV protein B 1710277 5677408 Clos_1603 Alkaliphilus oremlandii OhILAs peptidase S55 sporulation stage IV protein B YP_001513142.1 1708979 R 350688 CDS YP_001513143.1 158320636 5677409 complement(1710437..1712149) 1 NC_009922.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: tte:TTE1302 ATPases involved in DNA repair; DNA repair protein RecN 1712149 5677409 Clos_1604 Alkaliphilus oremlandii OhILAs DNA repair protein RecN YP_001513143.1 1710437 R 350688 CDS YP_001513144.1 158320637 5677410 complement(1712164..1712613) 1 NC_009922.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 1712613 argR 5677410 argR Alkaliphilus oremlandii OhILAs arginine repressor YP_001513144.1 1712164 R 350688 CDS YP_001513145.1 158320638 5678079 complement(1712765..1713571) 1 NC_009922.1 TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; KEGG: cbo:CBO1880 methyltransferase; hemolysin A 1713571 5678079 Clos_1606 Alkaliphilus oremlandii OhILAs hemolysin A YP_001513145.1 1712765 R 350688 CDS YP_001513146.1 158320639 5678080 complement(1713617..1715491) 1 NC_009922.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: tte:TTE1298 deoxyxylulose-5-phosphate synthase; deoxyxylulose-5-phosphate synthase 1715491 5678080 Clos_1607 Alkaliphilus oremlandii OhILAs deoxyxylulose-5-phosphate synthase YP_001513146.1 1713617 R 350688 CDS YP_001513147.1 158320640 5678081 complement(1715628..1716077) 1 NC_009922.1 PFAM: acid phosphatase/vanadium-dependent haloperoxidase related; KEGG: csc:Csac_1851 acid phosphatase/vanadium-dependent haloperoxidase related; acid phosphatase/vanadium-dependent haloperoxidase-like protein 1716077 5678081 Clos_1608 Alkaliphilus oremlandii OhILAs acid phosphatase/vanadium-dependent haloperoxidase-like protein YP_001513147.1 1715628 R 350688 CDS YP_001513148.1 158320641 5678082 complement(1716095..1716982) 1 NC_009922.1 PFAM: Polyprenyl synthetase; KEGG: cdf:CD1205 geranyltranstransferase; polyprenyl synthetase 1716982 5678082 Clos_1609 Alkaliphilus oremlandii OhILAs polyprenyl synthetase YP_001513148.1 1716095 R 350688 CDS YP_001513149.1 158320642 5678083 complement(1716982..1717215) 1 NC_009922.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: gme:Gmet_1936 exonuclease VII, small subunit; exodeoxyribonuclease VII small subunit 1717215 5678083 Clos_1610 Alkaliphilus oremlandii OhILAs exodeoxyribonuclease VII small subunit YP_001513149.1 1716982 R 350688 CDS YP_001513150.1 158320643 5678084 complement(1717202..1718428) 1 NC_009922.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1718428 xseA 5678084 xseA Alkaliphilus oremlandii OhILAs exodeoxyribonuclease VII large subunit YP_001513150.1 1717202 R 350688 CDS YP_001513151.1 158320644 5678085 complement(1718431..1719417) 1 NC_009922.1 PFAM: peptidase M22 glycoprotease; KEGG: mta:Moth_1520 O-sialoglycoprotein endopeptidase; O-sialoglycoprotein endopeptidase 1719417 5678085 Clos_1612 Alkaliphilus oremlandii OhILAs O-sialoglycoprotein endopeptidase YP_001513151.1 1718431 R 350688 CDS YP_001513152.1 158320645 5678086 complement(1719410..1719826) 1 NC_009922.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: cth:Cthe_0834 NusB antitermination factor; NusB antitermination factor 1719826 5678086 Clos_1613 Alkaliphilus oremlandii OhILAs NusB antitermination factor YP_001513152.1 1719410 R 350688 CDS YP_001513153.1 158320646 5678087 complement(1719988..1720380) 1 NC_009922.1 PFAM: protein of unknown function DUF322; KEGG: tte:TTE1291 hypothetical protein; hypothetical protein 1720380 5678087 Clos_1614 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513153.1 1719988 R 350688 CDS YP_001513154.1 158320647 5678088 complement(1720450..1721190) 1 NC_009922.1 KEGG: cdf:CD1199 putative stage III sporulation protein AH; putative stage III sporulation protein AH 1721190 5678088 Clos_1615 Alkaliphilus oremlandii OhILAs putative stage III sporulation protein AH YP_001513154.1 1720450 R 350688 CDS YP_001513155.1 158320648 5678189 complement(1721243..1721833) 1 NC_009922.1 TIGRFAM: Sporulation stage III protein AG; KEGG: cdf:CD1198 stage III sporulation protein AG; sporulation stage III protein AG 1721833 5678189 Clos_1616 Alkaliphilus oremlandii OhILAs sporulation stage III protein AG YP_001513155.1 1721243 R 350688 CDS YP_001513156.1 158320649 5678190 complement(1721850..1722482) 1 NC_009922.1 TIGRFAM: Sporulation stage III protein AF; KEGG: cth:Cthe_0840 hypothetical protein; sporulation stage III protein AF 1722482 5678190 Clos_1617 Alkaliphilus oremlandii OhILAs sporulation stage III protein AF YP_001513156.1 1721850 R 350688 CDS YP_001513157.1 158320650 5678191 complement(1722487..1723668) 1 NC_009922.1 TIGRFAM: Sporulation stage III protein AE; KEGG: drm:Dred_1060 hypothetical protein; sporulation stage III protein AE 1723668 5678191 Clos_1618 Alkaliphilus oremlandii OhILAs sporulation stage III protein AE YP_001513157.1 1722487 R 350688 CDS YP_001513158.1 158320651 5678192 complement(1723681..1724067) 1 NC_009922.1 TIGRFAM: Sporulation stage III protein AD; KEGG: cth:Cthe_0842 stage III sporulation protein AD; sporulation stage III protein AD 1724067 5678192 Clos_1619 Alkaliphilus oremlandii OhILAs sporulation stage III protein AD YP_001513158.1 1723681 R 350688 CDS YP_001513159.1 158320652 5678193 complement(1724080..1724283) 1 NC_009922.1 PFAM: Stage III sporulation AC family protein; KEGG: tte:TTE1285 hypothetical protein; stage III sporulation AC family protein 1724283 5678193 Clos_1620 Alkaliphilus oremlandii OhILAs stage III sporulation AC family protein YP_001513159.1 1724080 R 350688 CDS YP_001513160.1 158320653 5678194 complement(1724312..1724833) 1 NC_009922.1 TIGRFAM: Sporulation stage III protein AB; KEGG: drm:Dred_1057 stage III sporulation protein AB; sporulation stage III protein AB 1724833 5678194 Clos_1621 Alkaliphilus oremlandii OhILAs sporulation stage III protein AB YP_001513160.1 1724312 R 350688 CDS YP_001513161.1 158320654 5678195 complement(1724835..1725890) 1 NC_009922.1 TIGRFAM: Sporulation stage III protein AA; SMART: AAA ATPase; KEGG: cth:Cthe_0845 stage III sporulation protein spoIIIAA; sporulation stage III protein AA 1725890 5678195 Clos_1622 Alkaliphilus oremlandii OhILAs sporulation stage III protein AA YP_001513161.1 1724835 R 350688 CDS YP_001513162.1 158320655 5678196 complement(1725995..1726429) 1 NC_009922.1 KEGG: cdf:CD1247 hypothetical protein; hypothetical protein 1726429 5678196 Clos_1623 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513162.1 1725995 R 350688 CDS YP_001513163.1 158320656 5678197 complement(1726472..1727029) 1 NC_009922.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1727029 5678197 Clos_1624 Alkaliphilus oremlandii OhILAs elongation factor P YP_001513163.1 1726472 R 350688 CDS YP_001513164.1 158320657 5678198 complement(1727215..1727724) 1 NC_009922.1 PFAM: shikimate kinase; KEGG: tte:TTE1275 Shikimate kinase; shikimate kinase 1727724 5678198 Clos_1625 Alkaliphilus oremlandii OhILAs shikimate kinase YP_001513164.1 1727215 R 350688 CDS YP_001513165.1 158320658 5677932 complement(1727754..1728362) 1 NC_009922.1 hypothetical protein 1728362 5677932 Clos_1626 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513165.1 1727754 R 350688 CDS YP_001513166.1 158320659 5677933 complement(1728364..1728789) 1 NC_009922.1 hypothetical protein 1728789 5677933 Clos_1627 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513166.1 1728364 R 350688 CDS YP_001513167.1 158320660 5677934 complement(1728932..1729354) 1 NC_009922.1 hypothetical protein 1729354 5677934 Clos_1628 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513167.1 1728932 R 350688 CDS YP_001513168.1 158320661 5677935 complement(1729368..1729802) 1 NC_009922.1 KEGG: btk:BT9727_3982 comG operon protein 4; hypothetical protein 1729802 5677935 Clos_1629 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513168.1 1729368 R 350688 CDS YP_001513169.1 158320662 5677936 complement(1729916..1731955) 1 NC_009922.1 PFAM: S-layer domain protein; KEGG: cth:Cthe_2809 glycoside hydrolase, family 16; S-layer domain-containing protein 1731955 5677936 Clos_1630 Alkaliphilus oremlandii OhILAs S-layer domain-containing protein YP_001513169.1 1729916 R 350688 CDS YP_001513170.1 158320663 5677937 complement(1731968..1733374) 1 NC_009922.1 PFAM: Peptidoglycan-binding LysM; KEGG: gka:GK3175 hypothetical protein; peptidoglycan-binding LysM 1733374 5677937 Clos_1631 Alkaliphilus oremlandii OhILAs peptidoglycan-binding LysM YP_001513170.1 1731968 R 350688 CDS YP_001513171.1 158320664 5677938 complement(1733349..1733921) 1 NC_009922.1 KEGG: ssa:SSA_2308 hypothetical protein; hypothetical protein 1733921 5677938 Clos_1632 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513171.1 1733349 R 350688 CDS YP_001513172.1 158320665 5677939 complement(1733924..1735198) 1 NC_009922.1 TIGRFAM: type IV pilus assembly protein PilM; KEGG: cpe:CPE2283 probable fimbrial assembly protein; type IV pilus assembly protein PilM 1735198 5677939 Clos_1633 Alkaliphilus oremlandii OhILAs type IV pilus assembly protein PilM YP_001513172.1 1733924 R 350688 CDS YP_001513173.1 158320666 5677940 complement(1735308..1736066) 1 NC_009922.1 PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: tte:TTE1266 leader peptidase (prepilin peptidase) / N-methyltransferase; peptidase A24A domain-containing protein 1736066 5677940 Clos_1634 Alkaliphilus oremlandii OhILAs peptidase A24A domain-containing protein YP_001513173.1 1735308 R 350688 CDS YP_001513174.1 158320667 5677941 complement(1736116..1736511) 1 NC_009922.1 KEGG: drm:Dred_1042 hypothetical protein; hypothetical protein 1736511 5677941 Clos_1635 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513174.1 1736116 R 350688 CDS YP_001513175.1 158320668 5678789 complement(1736747..1737949) 1 NC_009922.1 PFAM: type II secretion system protein; KEGG: tte:TTE1264 General secretory pathway protein F; type II secretion system protein 1737949 5678789 Clos_1636 Alkaliphilus oremlandii OhILAs type II secretion system protein YP_001513175.1 1736747 R 350688 CDS YP_001513176.1 158320669 5678790 complement(1737961..1739013) 1 NC_009922.1 KEGG: tte:TTE1263 predicted ATPases involved in pili biogenesis, PilT homologs; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; twitching motility protein 1739013 5678790 Clos_1637 Alkaliphilus oremlandii OhILAs twitching motility protein YP_001513176.1 1737961 R 350688 CDS YP_001513177.1 158320670 5678791 complement(1739024..1740706) 1 NC_009922.1 PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: tte:TTE1262 predicted ATPases involved in pili biogenesis, PilB homologs; type II secretion system protein E 1740706 5678791 Clos_1638 Alkaliphilus oremlandii OhILAs type II secretion system protein E YP_001513177.1 1739024 R 350688 CDS YP_001513178.1 158320671 5678792 complement(1740828..1741325) 1 NC_009922.1 TIGRFAM: hydrolase, HAD-superfamily, subfamily IIIA; HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; PFAM: HAD-superfamily phosphatase subfamily IIIA; KEGG: cth:Cthe_0855 HAD superfamily (subfamily IIIA) phosphatase, TIGR01668; HAD family phosphatase 1741325 5678792 Clos_1639 Alkaliphilus oremlandii OhILAs HAD family phosphatase YP_001513178.1 1740828 R 350688 CDS YP_001513179.1 158320672 5678793 complement(1741563..1741994) 1 NC_009922.1 KEGG: tte:TTE0491 flagellar protein; hypothetical protein 1741994 5678793 Clos_1640 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513179.1 1741563 R 350688 CDS YP_001513180.1 158320673 5678794 complement(1742967..1743233) 1 NC_009922.1 PFAM: sigma-70 region 4 domain protein; KEGG: cth:Cthe_1012 RNA polymerase, sigma 28 subunit; FliA/WhiG family RNA polymerase sigma 28 subunit 1743233 5678794 Clos_1641 Alkaliphilus oremlandii OhILAs FliA/WhiG family RNA polymerase sigma 28 subunit YP_001513180.1 1742967 R 350688 CDS YP_001513181.1 158320674 5678795 complement(1743722..1744030) 1 NC_009922.1 KEGG: cbo:CBO1426 spore coat protein; spore coat protein 1744030 5678795 Clos_1642 Alkaliphilus oremlandii OhILAs spore coat protein YP_001513181.1 1743722 R 350688 CDS YP_001513182.1 158320675 5678796 complement(1744032..1744250) 1 NC_009922.1 KEGG: cac:CAC3318 hypothetical protein; hypothetical protein 1744250 5678796 Clos_1643 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513182.1 1744032 R 350688 CDS YP_001513183.1 158320676 5678797 complement(1744495..1744617) 1 NC_009922.1 hypothetical protein 1744617 5678797 Clos_1644 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513183.1 1744495 R 350688 CDS YP_001513184.1 158320677 5677151 complement(1745775..1746110) 1 NC_009922.1 KEGG: bcz:pE33L466_0017 hypothetical protein; hypothetical protein 1746110 5677151 Clos_1646 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513184.1 1745775 R 350688 CDS YP_001513185.1 158320678 5677153 complement(1748014..1748247) 1 NC_009922.1 hypothetical protein 1748247 5677153 Clos_1648 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513185.1 1748014 R 350688 CDS YP_001513186.1 158320679 5677155 1749581..1749931 1 NC_009922.1 KEGG: ape:APE_1221 hypothetical protein; hypothetical protein 1749931 5677155 Clos_1650 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513186.1 1749581 D 350688 CDS YP_001513187.1 158320680 5677156 complement(1750059..1750721) 1 NC_009922.1 KEGG: bce:BC2886 hypothetical protein; hypothetical protein 1750721 5677156 Clos_1651 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513187.1 1750059 R 350688 CDS YP_001513188.1 158320681 5677157 1751340..1752896 1 NC_009922.1 PFAM: Resolvase domain; Recombinase; KEGG: ctc:CTC01067 site-specific recombinase; recombinase 1752896 5677157 Clos_1652 Alkaliphilus oremlandii OhILAs recombinase YP_001513188.1 1751340 D 350688 CDS YP_001513189.1 158320682 5677158 complement(1752812..1753342) 1 NC_009922.1 PFAM: sigma-70 region 2 domain protein; KEGG: tte:TTE1259 DNA-directed RNA polymerase sigma subunits (sigma70/sigma32); FliA/WhiG family RNA polymerase sigma factor 1753342 5677158 Clos_1653 Alkaliphilus oremlandii OhILAs FliA/WhiG family RNA polymerase sigma factor YP_001513189.1 1752812 R 350688 CDS YP_001513190.1 158320683 5677159 complement(1753497..1755176) 1 NC_009922.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: cth:Cthe_1011 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 1755176 5677159 Clos_1654 Alkaliphilus oremlandii OhILAs peptidoglycan glycosyltransferase YP_001513190.1 1753497 R 350688 CDS YP_001513191.1 158320684 5677160 complement(1755234..1755878) 1 NC_009922.1 TIGRFAM: uridine kinase; PFAM: phosphoribulokinase/uridine kinase; KEGG: cno:NT01CX_2269 uridine kinase; uridine kinase 1755878 5677160 Clos_1655 Alkaliphilus oremlandii OhILAs uridine kinase YP_001513191.1 1755234 R 350688 CDS YP_001513192.1 158320685 5677554 complement(1755865..1757103) 1 NC_009922.1 PFAM: peptidase U32; KEGG: cdf:CD1228 putative protease; peptidase U32 1757103 5677554 Clos_1656 Alkaliphilus oremlandii OhILAs peptidase U32 YP_001513192.1 1755865 R 350688 CDS YP_001513193.1 158320686 5677555 complement(1757117..1757812) 1 NC_009922.1 PFAM: O-methyltransferase family 3; KEGG: cdf:CD1227 putative O-methyltransferase; O-methyltransferase family protein 1757812 5677555 Clos_1657 Alkaliphilus oremlandii OhILAs O-methyltransferase family protein YP_001513193.1 1757117 R 350688 CDS YP_001513194.1 158320687 5677556 complement(1758063..1758656) 1 NC_009922.1 PFAM: protein of unknown function DUF340 membrane; KEGG: drm:Dred_2328 protein of unknown function DUF340, membrane; hypothetical protein 1758656 5677556 Clos_1658 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513194.1 1758063 R 350688 CDS YP_001513195.1 158320688 5677557 complement(1758646..1758948) 1 NC_009922.1 KEGG: fnu:FN1082 hypothetical protein; hypothetical protein 1758948 5677557 Clos_1659 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513195.1 1758646 R 350688 CDS YP_001513196.1 158320689 5677558 complement(1759014..1760678) 1 NC_009922.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: tte:TTE1253 predicted hydrolase of the metallo-beta-lactamase superfamily; beta-lactamase domain-containing protein 1760678 5677558 Clos_1660 Alkaliphilus oremlandii OhILAs beta-lactamase domain-containing protein YP_001513196.1 1759014 R 350688 CDS YP_001513197.1 158320690 5677559 complement(1760965..1761399) 1 NC_009922.1 PFAM: ferric-uptake regulator; KEGG: cac:CAC1682 ferric uptake regulation protein; ferric uptake regulator family protein 1761399 5677559 Clos_1661 Alkaliphilus oremlandii OhILAs ferric uptake regulator family protein YP_001513197.1 1760965 R 350688 CDS YP_001513198.1 158320691 5677560 complement(1761526..1761786) 1 NC_009922.1 PFAM: protein of unknown function DUF1292; KEGG: cdf:CD1286 hypothetical protein; hypothetical protein 1761786 5677560 Clos_1662 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513198.1 1761526 R 350688 CDS YP_001513199.1 158320692 5677561 complement(1761876..1762295) 1 NC_009922.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: cdf:CD1285 putative holliday junction resolvase; Holliday junction resolvase YqgF 1762295 5677561 Clos_1663 Alkaliphilus oremlandii OhILAs Holliday junction resolvase YqgF YP_001513199.1 1761876 R 350688 CDS YP_001513200.1 158320693 5677562 complement(1762344..1764512) 1 NC_009922.1 KEGG: tte:TTE0101 hypothetical protein; hypothetical protein 1764512 5677562 Clos_1664 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513200.1 1762344 R 350688 CDS YP_001513201.1 158320694 5677563 complement(1764524..1764781) 1 NC_009922.1 PFAM: protein of unknown function DUF965; KEGG: chy:CHY_0540 hypothetical protein; hypothetical protein 1764781 5677563 Clos_1665 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513201.1 1764524 R 350688 CDS YP_001513202.1 158320695 5677913 complement(1765086..1767728) 1 NC_009922.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1767728 alaS 5677913 alaS Alkaliphilus oremlandii OhILAs alanyl-tRNA synthetase YP_001513202.1 1765086 R 350688 CDS YP_001513203.1 158320696 5677914 complement(1768142..1769377) 1 NC_009922.1 PFAM: protein of unknown function UPF0118; KEGG: pth:PTH_1059 predicted permease; hypothetical protein 1769377 5677914 Clos_1667 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513203.1 1768142 R 350688 CDS YP_001513204.1 158320697 5677915 complement(1769731..1770267) 1 NC_009922.1 PFAM: PRC-barrel domain protein; KEGG: cth:Cthe_3197 PRC-barrel domain protein; PRC-barrel domain-containing protein 1770267 5677915 Clos_1668 Alkaliphilus oremlandii OhILAs PRC-barrel domain-containing protein YP_001513204.1 1769731 R 350688 CDS YP_001513205.1 158320698 5677916 complement(1770380..1770820) 1 NC_009922.1 PFAM: nitrogen-fixing NifU domain protein; KEGG: cdf:CD1280 NifU-like protein; NifU domain-containing protein 1770820 5677916 Clos_1669 Alkaliphilus oremlandii OhILAs NifU domain-containing protein YP_001513205.1 1770380 R 350688 CDS YP_001513206.1 158320699 5677917 complement(1770820..1772001) 1 NC_009922.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cdf:CD1279 cysteine desulfurase; cysteine desulfurase 1772001 5677917 Clos_1670 Alkaliphilus oremlandii OhILAs cysteine desulfurase YP_001513206.1 1770820 R 350688 CDS YP_001513207.1 158320700 5677918 complement(1772064..1772603) 1 NC_009922.1 TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: tte:TTE1242 predicted transcriptional regulator; BadM/Rrf2 family transcriptional regulator 1772603 5677918 Clos_1671 Alkaliphilus oremlandii OhILAs BadM/Rrf2 family transcriptional regulator YP_001513207.1 1772064 R 350688 CDS YP_001513208.1 158320701 5677919 1772863..1773642 1 NC_009922.1 PFAM: SCP-like extracellular; KEGG: sth:STH564 hypothetical protein; SCP-like extracellular 1773642 5677919 Clos_1672 Alkaliphilus oremlandii OhILAs SCP-like extracellular YP_001513208.1 1772863 D 350688 CDS YP_001513209.1 158320702 5677920 complement(1773703..1774338) 1 NC_009922.1 KEGG: dsy:DSY4494 hypothetical protein; hypothetical protein 1774338 5677920 Clos_1673 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513209.1 1773703 R 350688 CDS YP_001513210.1 158320703 5677921 1774466..1775938 1 NC_009922.1 KEGG: tte:TTE1676 hypothetical protein; hypothetical protein 1775938 5677921 Clos_1674 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513210.1 1774466 D 350688 CDS YP_001513211.1 158320704 5677922 complement(1775944..1776231) 1 NC_009922.1 KEGG: cac:CAC2352 hypothetical protein; hypothetical protein 1776231 5677922 Clos_1675 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513211.1 1775944 R 350688 CDS YP_001513212.1 158320705 5678151 complement(1776398..1778278) 1 NC_009922.1 molecular chaperone; heat shock protein 90 1778278 5678151 Clos_1676 Alkaliphilus oremlandii OhILAs heat shock protein 90 YP_001513212.1 1776398 R 350688 CDS YP_001513213.1 158320706 5678152 complement(1778391..1779089) 1 NC_009922.1 PFAM: helix-turn-helix domain protein; peptidase S24 S26A and S26B; KEGG: cac:CAC3247 predicted transcriptional regulator, LacI/xre family; XRE family transcriptional regulator 1779089 5678152 Clos_1677 Alkaliphilus oremlandii OhILAs XRE family transcriptional regulator YP_001513213.1 1778391 R 350688 CDS YP_001513214.1 158320707 5678153 1779238..1780434 1 NC_009922.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: gtn:GTNG_1543 DNA polymerase IV; DNA-directed DNA polymerase 1780434 5678153 Clos_1678 Alkaliphilus oremlandii OhILAs DNA-directed DNA polymerase YP_001513214.1 1779238 D 350688 CDS YP_001513215.1 158320708 5678154 1780589..1780894 1 NC_009922.1 KEGG: gtn:GTNG_3423 transposition regulatory protein TnpC; transposition regulatory protein TnpC 1780894 5678154 Clos_1679 Alkaliphilus oremlandii OhILAs transposition regulatory protein TnpC YP_001513215.1 1780589 D 350688 CDS YP_001513216.1 158320709 5678155 1780984..1781640 1 NC_009922.1 hypothetical protein 1781640 5678155 Clos_1680 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513216.1 1780984 D 350688 CDS YP_001513217.1 158320710 5678156 complement(1781748..1782830) 1 NC_009922.1 PFAM: GTPase EngC; KEGG: drm:Dred_0751 ribosome small subunit-dependent GTPase A; GTPase EngC 1782830 5678156 Clos_1681 Alkaliphilus oremlandii OhILAs GTPase EngC YP_001513217.1 1781748 R 350688 CDS YP_001513218.1 158320711 5678157 1783085..1783822 1 NC_009922.1 KEGG: cno:NT01CX_2290 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: tRNA pseudouridine synthase; tRNA pseudouridine synthase A 1783822 5678157 Clos_1682 Alkaliphilus oremlandii OhILAs tRNA pseudouridine synthase A YP_001513218.1 1783085 D 350688 CDS YP_001513219.1 158320712 5678158 complement(1783895..1784848) 1 NC_009922.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 1784848 5678158 Clos_1683 Alkaliphilus oremlandii OhILAs ribonuclease Z YP_001513219.1 1783895 R 350688 CDS YP_001513220.1 158320713 5678159 complement(1784872..1785096) 1 NC_009922.1 PFAM: protein of unknown function DUF1653; KEGG: pcr:Pcryo_2268 protein of unknown function DUF1653; hypothetical protein 1785096 5678159 Clos_1684 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513220.1 1784872 R 350688 CDS YP_001513221.1 158320714 5678160 complement(1785115..1785465) 1 NC_009922.1 KEGG: dsy:DSY4235 hypothetical protein; hypothetical protein 1785465 5678160 Clos_1685 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513221.1 1785115 R 350688 CDS YP_001513222.1 158320715 5678304 complement(1785469..1785948) 1 NC_009922.1 KEGG: cth:Cthe_3111 hypothetical protein; hypothetical protein 1785948 5678304 Clos_1686 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513222.1 1785469 R 350688 CDS YP_001513223.1 158320716 5678305 1786162..1786656 1 NC_009922.1 KEGG: cbo:CBO2620 membrane protein; membrane protein 1786656 5678305 Clos_1687 Alkaliphilus oremlandii OhILAs membrane protein YP_001513223.1 1786162 D 350688 CDS YP_001513224.1 158320717 5678306 1786771..1788033 1 NC_009922.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: ctc:CTC01048 ATPase associated with chromosome architecture/replication; recombination factor protein RarA 1788033 5678306 Clos_1688 Alkaliphilus oremlandii OhILAs recombination factor protein RarA YP_001513224.1 1786771 D 350688 CDS YP_001513225.1 158320718 5678307 complement(1788199..1789122) 1 NC_009922.1 hypothetical protein 1789122 5678307 Clos_1689 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513225.1 1788199 R 350688 CDS YP_001513226.1 158320719 5678308 1789347..1790405 1 NC_009922.1 KEGG: tte:TTE1676 hypothetical protein; hypothetical protein 1790405 5678308 Clos_1690 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513226.1 1789347 D 350688 CDS YP_001513227.1 158320720 5678309 1790383..1790790 1 NC_009922.1 KEGG: tva:TVAG_088150 hypothetical protein; hypothetical protein 1790790 5678309 Clos_1691 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513227.1 1790383 D 350688 CDS YP_001513228.1 158320721 5678310 complement(1790892..1791965) 1 NC_009922.1 hypothetical protein 1791965 5678310 Clos_1692 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513228.1 1790892 R 350688 CDS YP_001513229.1 158320722 5678311 complement(1792094..1793158) 1 NC_009922.1 PFAM: alanine racemase domain protein; KEGG: cbo:CBO1973 alanine racemase; alanine racemase domain-containing protein 1793158 5678311 Clos_1693 Alkaliphilus oremlandii OhILAs alanine racemase domain-containing protein YP_001513229.1 1792094 R 350688 CDS YP_001513230.1 158320723 5678312 complement(1793170..1794528) 1 NC_009922.1 KEGG: cdf:CD0447 putative component of D-ornithine aminomutase; putative component of D-ornithine aminomutase 1794528 5678312 Clos_1694 Alkaliphilus oremlandii OhILAs putative component of D-ornithine aminomutase YP_001513230.1 1793170 R 350688 CDS YP_001513231.1 158320724 5678313 complement(1794518..1796725) 1 NC_009922.1 PFAM: cobalamin B12-binding domain protein; D-Lysine 56-aminomutase alpha subunit; KEGG: cdf:CD0446 D-ornithine aminomutase E component; cobalamin B12-binding domain-containing protein 1796725 5678313 Clos_1695 Alkaliphilus oremlandii OhILAs cobalamin B12-binding domain-containing protein YP_001513231.1 1794518 R 350688 CDS YP_001513232.1 158320725 5678465 complement(1796725..1797090) 1 NC_009922.1 KEGG: cdf:CD0445 D-ornithine aminomutase S component; D-ornithine aminomutase S component 1797090 5678465 Clos_1696 Alkaliphilus oremlandii OhILAs D-ornithine aminomutase S component YP_001513232.1 1796725 R 350688 CDS YP_001513233.1 158320726 5678466 complement(1797106..1798527) 1 NC_009922.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cdf:CD0444 putative pyridoxal-phosphate dependent enzyme; pyridoxal-5'-phosphate-dependent protein beta subunit 1798527 5678466 Clos_1697 Alkaliphilus oremlandii OhILAs pyridoxal-5'-phosphate-dependent protein beta subunit YP_001513233.1 1797106 R 350688 CDS YP_001513234.1 158320727 5678467 complement(1798520..1798825) 1 NC_009922.1 KEGG: cdf:CD0443 hypothetical protein; hypothetical protein 1798825 5678467 Clos_1698 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513234.1 1798520 R 350688 CDS YP_001513235.1 158320728 5678468 complement(1798864..1799910) 1 NC_009922.1 PFAM: dihydrodipicolinate reductase; KEGG: cdf:CD0442 putative oxidoreductase; dihydrodipicolinate reductase 1799910 5678468 Clos_1699 Alkaliphilus oremlandii OhILAs dihydrodipicolinate reductase YP_001513235.1 1798864 R 350688 CDS YP_001513236.1 158320729 5678469 complement(1800130..1801362) 1 NC_009922.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1801362 glyA 5678469 glyA Alkaliphilus oremlandii OhILAs serine hydroxymethyltransferase YP_001513236.1 1800130 R 350688 CDS YP_001513237.1 158320730 5678470 1801662..1802465 1 NC_009922.1 PFAM: protein of unknown function DUF1212; KEGG: csc:Csac_2062 protein of unknown function DUF1212; hypothetical protein 1802465 5678470 Clos_1701 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513237.1 1801662 D 350688 CDS YP_001513238.1 158320731 5678471 1802453..1802893 1 NC_009922.1 KEGG: cdf:CD2728 hypothetical protein; hypothetical protein 1802893 5678471 Clos_1702 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513238.1 1802453 D 350688 CDS YP_001513239.1 158320732 5678472 complement(1802957..1803493) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC1416 predicted acetyltransferase; N-acetyltransferase GCN5 1803493 5678472 Clos_1703 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001513239.1 1802957 R 350688 CDS YP_001513240.1 158320733 5678473 complement(1803511..1804932) 1 NC_009922.1 catalyzes the removal of amino acids from the N termini of peptides; putative aminopeptidase 1804932 5678473 Clos_1704 Alkaliphilus oremlandii OhILAs putative aminopeptidase YP_001513240.1 1803511 R 350688 CDS YP_001513241.1 158320734 5678474 complement(1805179..1805610) 1 NC_009922.1 KEGG: cth:Cthe_3040 hypothetical protein; hypothetical protein 1805610 5678474 Clos_1705 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513241.1 1805179 R 350688 CDS YP_001513242.1 158320735 5678655 complement(1805772..1806200) 1 NC_009922.1 PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: cdf:CD2729 putative regulator of the sigma(E) factor; sigma E positive regulator RseC/MucC 1806200 5678655 Clos_1706 Alkaliphilus oremlandii OhILAs sigma E positive regulator RseC/MucC YP_001513242.1 1805772 R 350688 CDS YP_001513243.1 158320736 5678656 complement(1806276..1807025) 1 NC_009922.1 PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: cac:CAC0908 dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis family 1; UBA/THIF-type NAD/FAD binding protein 1807025 5678656 Clos_1707 Alkaliphilus oremlandii OhILAs UBA/THIF-type NAD/FAD binding protein YP_001513243.1 1806276 R 350688 CDS YP_001513244.1 158320737 5678657 complement(1807381..1807689) 1 NC_009922.1 KEGG: gtn:GTNG_2767 predicted diverged CheY-domain; hypothetical protein 1807689 5678657 Clos_1708 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513244.1 1807381 R 350688 CDS YP_001513245.1 158320738 5678658 complement(1808036..1809802) 1 NC_009922.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); GAD domain protein; tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: cdf:CD2739 putative aspartyl-tRNA synthetase; aspartyl-tRNA synthetase 1809802 5678658 Clos_1709 Alkaliphilus oremlandii OhILAs aspartyl-tRNA synthetase YP_001513245.1 1808036 R 350688 CDS YP_001513246.1 158320739 5678659 complement(1809807..1811072) 1 NC_009922.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1811072 hisS 5678659 hisS Alkaliphilus oremlandii OhILAs histidyl-tRNA synthetase YP_001513246.1 1809807 R 350688 CDS YP_001513247.1 158320740 5678660 complement(1811383..1812882) 1 NC_009922.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1812882 5678660 Clos_1711 Alkaliphilus oremlandii OhILAs coproporphyrinogen III oxidase YP_001513247.1 1811383 R 350688 CDS YP_001513248.1 158320741 5678661 complement(1812893..1813513) 1 NC_009922.1 PFAM: beta-lactamase domain protein; KEGG: drm:Dred_0735 beta-lactamase domain protein; beta-lactamase domain-containing protein 1813513 5678661 Clos_1712 Alkaliphilus oremlandii OhILAs beta-lactamase domain-containing protein YP_001513248.1 1812893 R 350688 CDS YP_001513249.1 158320742 5678662 complement(1813525..1813974) 1 NC_009922.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 1813974 5678662 Clos_1713 Alkaliphilus oremlandii OhILAs D-tyrosyl-tRNA(Tyr) deacylase YP_001513249.1 1813525 R 350688 CDS YP_001513250.1 158320743 5678663 complement(1813988..1816162) 1 NC_009922.1 KEGG: tte:TTE1195 Guanosine polyphosphate pyrophosphohydrolases/synthetases; TIGRFAM: RelA/SpoT family protein; PFAM: amino acid-binding ACT domain protein; TGS domain protein; metal-dependent phosphohydrolase HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 1816162 5678663 Clos_1714 Alkaliphilus oremlandii OhILAs (p)ppGpp synthetase I SpoT/RelA YP_001513250.1 1813988 R 350688 CDS YP_001513251.1 158320744 5678664 complement(1816450..1816968) 1 NC_009922.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 1816968 5678664 Clos_1715 Alkaliphilus oremlandii OhILAs adenine phosphoribosyltransferase YP_001513251.1 1816450 R 350688 CDS YP_001513252.1 158320745 5677243 complement(1817129..1818892) 1 NC_009922.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cac:CAC2232 SsDNA exonuclease, RecJ; single-stranded-DNA-specific exonuclease RecJ 1818892 5677243 Clos_1716 Alkaliphilus oremlandii OhILAs single-stranded-DNA-specific exonuclease RecJ YP_001513252.1 1817129 R 350688 CDS YP_001513253.1 158320746 5677244 complement(1819042..1819548) 1 NC_009922.1 KEGG: ctc:CTC01682 ferripyochelin binding protein; ferripyochelin binding protein 1819548 5677244 Clos_1717 Alkaliphilus oremlandii OhILAs ferripyochelin binding protein YP_001513253.1 1819042 R 350688 CDS YP_001513254.1 158320747 5677245 complement(1819541..1820908) 1 NC_009922.1 PFAM: Radical SAM domain protein; KEGG: cdf:CD2749 putative radical SAM family protein; radical SAM domain-containing protein 1820908 5677245 Clos_1718 Alkaliphilus oremlandii OhILAs radical SAM domain-containing protein YP_001513254.1 1819541 R 350688 CDS YP_001513255.1 158320748 5677246 complement(1821073..1821213) 1 NC_009922.1 KEGG: cth:Cthe_0907 hypothetical protein; hypothetical protein 1821213 5677246 Clos_1719 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513255.1 1821073 R 350688 CDS YP_001513256.1 158320749 5677247 complement(1821288..1821686) 1 NC_009922.1 KEGG: tte:TTE1185 hypothetical protein; hypothetical protein 1821686 5677247 Clos_1720 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513256.1 1821288 R 350688 CDS YP_001513257.1 158320750 5677248 complement(1821816..1822100) 1 NC_009922.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: cdf:CD2801 putative protein translocase subunit; preprotein translocase subunit YajC 1822100 5677248 Clos_1721 Alkaliphilus oremlandii OhILAs preprotein translocase subunit YajC YP_001513257.1 1821816 R 350688 CDS YP_001513258.1 158320751 5677249 complement(1822202..1823320) 1 NC_009922.1 KEGG: cdf:CD2802 queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 1823320 5677249 Clos_1722 Alkaliphilus oremlandii OhILAs queuine tRNA-ribosyltransferase YP_001513258.1 1822202 R 350688 CDS YP_001513259.1 158320752 5677250 complement(1823339..1824364) 1 NC_009922.1 TIGRFAM: S-adenosylmethionine--tRNA-ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; KEGG: cbo:CBO3069 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; S-adenosylmethionine--tRNA-ribosyltransferase- isomerase 1824364 5677250 Clos_1723 Alkaliphilus oremlandii OhILAs S-adenosylmethionine--tRNA-ribosyltransferase- isomerase YP_001513259.1 1823339 R 350688 CDS YP_001513260.1 158320753 5677251 complement(1824369..1825979) 1 NC_009922.1 TIGRFAM: SpoIID/LytB domain; PFAM: Stage II sporulation D domain protein; KEGG: cth:Cthe_0960 SpoIID/LytB domain containing protein; SpoIID/LytB domain-containing protein 1825979 5677251 Clos_1724 Alkaliphilus oremlandii OhILAs SpoIID/LytB domain-containing protein YP_001513260.1 1824369 R 350688 CDS YP_001513261.1 158320754 5677252 complement(1826068..1827075) 1 NC_009922.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 1827075 ruvB 5677252 ruvB Alkaliphilus oremlandii OhILAs Holliday junction DNA helicase RuvB YP_001513261.1 1826068 R 350688 CDS YP_001513262.1 158320755 5676327 complement(1827093..1827677) 1 NC_009922.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 1827677 ruvA 5676327 ruvA Alkaliphilus oremlandii OhILAs Holliday junction DNA helicase RuvA YP_001513262.1 1827093 R 350688 CDS YP_001513263.1 158320756 5676328 complement(1827693..1828187) 1 NC_009922.1 endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 1828187 ruvC 5676328 ruvC Alkaliphilus oremlandii OhILAs Holliday junction resolvase YP_001513263.1 1827693 R 350688 CDS YP_001513264.1 158320757 5676329 complement(1828316..1830721) 1 NC_009922.1 PFAM: peptidase S16 lon domain protein; KEGG: cth:Cthe_1773 peptidase S16, lon-like protein; peptidase S16 lon domain-containing protein 1830721 5676329 Clos_1728 Alkaliphilus oremlandii OhILAs peptidase S16 lon domain-containing protein YP_001513264.1 1828316 R 350688 CDS YP_001513265.1 158320758 5676330 complement(1830986..1831627) 1 NC_009922.1 KEGG: tte:TTE1137 hypothetical protein; hypothetical protein 1831627 5676330 Clos_1729 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513265.1 1830986 R 350688 CDS YP_001513266.1 158320759 5676332 complement(1831862..1832437) 1 NC_009922.1 PFAM: BioY protein; KEGG: cdf:CD2971 putative biotin synthase; BioY protein 1832437 5676332 Clos_1730 Alkaliphilus oremlandii OhILAs BioY protein YP_001513266.1 1831862 R 350688 CDS YP_001513267.1 158320760 5676333 complement(1832541..1833227) 1 NC_009922.1 PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: cpr:CPR_2299 ribosomal large subunit pseudouridine synthase F; pseudouridine synthase 1833227 5676333 Clos_1731 Alkaliphilus oremlandii OhILAs pseudouridine synthase YP_001513267.1 1832541 R 350688 CDS YP_001513268.1 158320761 5676334 complement(1833247..1834140) 1 NC_009922.1 KEGG: cth:Cthe_2543 spore germination protein-like protein; hypothetical protein 1834140 5676334 Clos_1732 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513268.1 1833247 R 350688 CDS YP_001513269.1 158320762 5676335 complement(1834153..1835526) 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE0482 sensory transduction histidine kinase; histidine kinase 1835526 5676335 Clos_1733 Alkaliphilus oremlandii OhILAs histidine kinase YP_001513269.1 1834153 R 350688 CDS YP_001513270.1 158320763 5677463 complement(1835588..1836277) 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE0481 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; two component transcriptional regulator 1836277 5677463 Clos_1734 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001513270.1 1835588 R 350688 CDS YP_001513271.1 158320764 5677464 complement(1836319..1838214) 1 NC_009922.1 TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; Elongation factor SelB winged helix 2; Elongation factor SelB winged helix 3; KEGG: cdf:CD2493 selenocysteine-specific elongation factor; selenocysteine-specific translation elongation factor 1838214 5677464 Clos_1735 Alkaliphilus oremlandii OhILAs selenocysteine-specific translation elongation factor YP_001513271.1 1836319 R 350688 CDS YP_001513272.1 158320765 5677465 complement(1838230..1839633) 1 NC_009922.1 catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 1839633 5677465 Clos_1736 Alkaliphilus oremlandii OhILAs selenocysteine synthase YP_001513272.1 1838230 R 350688 CDS YP_001513273.1 158320766 5677466 1840150..1841511 1 NC_009922.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: ppr:PBPRB1320 putative sodium/alanine symporter; amino acid carrier protein 1841511 5677466 Clos_1737 Alkaliphilus oremlandii OhILAs amino acid carrier protein YP_001513273.1 1840150 D 350688 CDS YP_001513274.1 158320767 5677467 complement(1841596..1842636) 1 NC_009922.1 Contains selenocysteine; TIGRFAM: selenide, water dikinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; KEGG: cpf:CPF_2374 selenide, water dikinase; selenide, water dikinase 1842636 5677467 Clos_1738 Alkaliphilus oremlandii OhILAs selenide, water dikinase YP_001513274.1 1841596 R 350688 CDS YP_001513275.1 158320768 5677468 complement(1842759..1843382) 1 NC_009922.1 KEGG: csc:Csac_1821 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; helix-hairpin-helix repeat-containing competence protein ComEA 1843382 5677468 Clos_1739 Alkaliphilus oremlandii OhILAs helix-hairpin-helix repeat-containing competence protein ComEA YP_001513275.1 1842759 R 350688 CDS YP_001513276.1 158320769 5677469 1843543..1844871 1 NC_009922.1 PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: cdf:CD2498 D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific penicillin-binding protein); Serine-type D-Ala-D-Ala carboxypeptidase 1844871 5677469 Clos_1740 Alkaliphilus oremlandii OhILAs Serine-type D-Ala-D-Ala carboxypeptidase YP_001513276.1 1843543 D 350688 CDS YP_001513277.1 158320770 5677470 complement(1844943..1845818) 1 NC_009922.1 KEGG: tte:TTE1009 L-serine deaminase; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, alpha subunit; PFAM: serine dehydratase alpha chain; L-serine dehydratase, iron-sulfur-dependent subunit alpha 1845818 5677470 Clos_1741 Alkaliphilus oremlandii OhILAs L-serine dehydratase, iron-sulfur-dependent subunit alpha YP_001513277.1 1844943 R 350688 CDS YP_001513278.1 158320771 5677471 complement(1845840..1846511) 1 NC_009922.1 KEGG: tte:TTE1008 L-serine deaminase; TIGRFAM: L-serine dehydratase, iron-sulfur-dependent, beta subunit; PFAM: amino acid-binding ACT domain protein; serine dehydratase beta chain; L-serine dehydratase, iron-sulfur-dependent subunit beta 1846511 5677471 Clos_1742 Alkaliphilus oremlandii OhILAs L-serine dehydratase, iron-sulfur-dependent subunit beta YP_001513278.1 1845840 R 350688 CDS YP_001513279.1 158320772 5677472 complement(1846595..1846972) 1 NC_009922.1 TIGRFAM: putative endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: cdf:CD2513 putative translation inhibitor endoribonuclease; putative endoribonuclease L-PSP 1846972 5677472 Clos_1743 Alkaliphilus oremlandii OhILAs putative endoribonuclease L-PSP YP_001513279.1 1846595 R 350688 CDS YP_001513280.1 158320773 5676014 complement(1846989..1847636) 1 NC_009922.1 PFAM: YheO domain protein; KEGG: tte:TTE0922 hypothetical protein; YheO domain-containing protein 1847636 5676014 Clos_1744 Alkaliphilus oremlandii OhILAs YheO domain-containing protein YP_001513280.1 1846989 R 350688 CDS YP_001513281.1 158320774 5676015 complement(1847754..1848119) 1 NC_009922.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: cth:Cthe_1238 iojap-like protein; iojap family protein 1848119 5676015 Clos_1745 Alkaliphilus oremlandii OhILAs iojap family protein YP_001513281.1 1847754 R 350688 CDS YP_001513282.1 158320775 5676016 complement(1848162..1849112) 1 NC_009922.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: drm:Dred_3112 cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator 1849112 5676016 Clos_1746 Alkaliphilus oremlandii OhILAs cell envelope-related transcriptional attenuator YP_001513282.1 1848162 R 350688 CDS YP_001513283.1 158320776 5676017 complement(1849099..1849710) 1 NC_009922.1 KEGG: cpr:CPR_2091 HD domain protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; metal dependent phosphohydrolase 1849710 5676017 Clos_1747 Alkaliphilus oremlandii OhILAs metal dependent phosphohydrolase YP_001513283.1 1849099 R 350688 CDS YP_001513284.1 158320777 5676018 complement(1849715..1850383) 1 NC_009922.1 KEGG: tte:TTE0918 nicotinate-nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain; nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase 1850383 5676018 Clos_1748 Alkaliphilus oremlandii OhILAs nicotinate (nicotinamide) nucleotide adenylyltransferase YP_001513284.1 1849715 R 350688 CDS YP_001513285.1 158320778 5676019 complement(1850419..1850715) 1 NC_009922.1 PFAM: protein of unknown function UPF0044; KEGG: cdf:CD1165 hypothetical protein; hypothetical protein 1850715 5676019 Clos_1749 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513285.1 1850419 R 350688 CDS YP_001513286.1 158320779 5676020 complement(1850747..1852039) 1 NC_009922.1 TIGRFAM: small GTP-binding protein; GTP-binding protein Obg/CgtA; PFAM: GTP-binding protein HSR1-related; GTP1/OBG sub domain protein; GTP1/OBG domain protein; KEGG: cdf:CD1164 Spo0B-associated GTP-binding protein; GTP-binding protein Obg/CgtA 1852039 5676020 Clos_1750 Alkaliphilus oremlandii OhILAs GTP-binding protein Obg/CgtA YP_001513286.1 1850747 R 350688 CDS YP_001513287.1 158320780 5676021 complement(1852264..1852566) 1 NC_009922.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1852566 rpmA 5676021 rpmA Alkaliphilus oremlandii OhILAs 50S ribosomal protein L27 YP_001513287.1 1852264 R 350688 CDS YP_001513288.1 158320781 5676022 complement(1852570..1852902) 1 NC_009922.1 PFAM: protein of unknown function DUF464; KEGG: tte:TTE0914 predicted ribosomal protein; hypothetical protein 1852902 5676022 Clos_1752 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513288.1 1852570 R 350688 CDS YP_001513289.1 158320782 5676023 complement(1852913..1853224) 1 NC_009922.1 PFAM: ribosomal protein L21; KEGG: cdf:CD1161 50S ribosomal protein L21; 50S ribosomal protein L21 1853224 rplU 5676023 rplU Alkaliphilus oremlandii OhILAs 50S ribosomal protein L21 YP_001513289.1 1852913 R 350688 CDS YP_001513290.1 158320783 5677411 complement(1853338..1854843) 1 NC_009922.1 TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA binding S1 domain protein; KEGG: cth:Cthe_0158 ribonuclease, Rne/Rng family; ribonuclease 1854843 5677411 Clos_1754 Alkaliphilus oremlandii OhILAs ribonuclease YP_001513290.1 1853338 R 350688 CDS YP_001513291.1 158320784 5677412 complement(1854860..1855609) 1 NC_009922.1 KEGG: cdf:CD1159 hypothetical protein; hypothetical protein 1855609 5677412 Clos_1755 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513291.1 1854860 R 350688 CDS YP_001513292.1 158320785 5677413 complement(1855609..1857447) 1 NC_009922.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_0156 radical SAM; radical SAM domain-containing protein 1857447 5677413 Clos_1756 Alkaliphilus oremlandii OhILAs radical SAM domain-containing protein YP_001513292.1 1855609 R 350688 CDS YP_001513293.1 158320786 5677414 complement(1857547..1858428) 1 NC_009922.1 PFAM: peptidase M50; KEGG: drm:Dred_2539 peptidase M50; peptidase M50 1858428 5677414 Clos_1757 Alkaliphilus oremlandii OhILAs peptidase M50 YP_001513293.1 1857547 R 350688 CDS YP_001513294.1 158320787 5677415 complement(1858447..1859136) 1 NC_009922.1 PFAM: peptidase M23B; KEGG: tte:TTE0907 membrane proteins related to metalloendopeptidase; peptidase M23B 1859136 5677415 Clos_1758 Alkaliphilus oremlandii OhILAs peptidase M23B YP_001513294.1 1858447 R 350688 CDS YP_001513295.1 158320788 5677416 complement(1859305..1859586) 1 NC_009922.1 works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE 1859586 5677416 Clos_1759 Alkaliphilus oremlandii OhILAs cell division topological specificity factor MinE YP_001513295.1 1859305 R 350688 CDS YP_001513296.1 158320789 5677417 complement(1859609..1860406) 1 NC_009922.1 TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid ac-diamide synthase; KEGG: dsy:DSY3174 hypothetical protein; septum site-determining protein MinD 1860406 5677417 Clos_1760 Alkaliphilus oremlandii OhILAs septum site-determining protein MinD YP_001513296.1 1859609 R 350688 CDS YP_001513297.1 158320790 5677418 complement(1860448..1861086) 1 NC_009922.1 TIGRFAM: septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC; KEGG: cth:Cthe_0092 septum site-determining protein MinC; septum site-determining protein MinC 1861086 5677418 Clos_1761 Alkaliphilus oremlandii OhILAs septum site-determining protein MinC YP_001513297.1 1860448 R 350688 CDS YP_001513298.1 158320791 5677419 complement(1861225..1864032) 1 NC_009922.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; KEGG: cdf:CD1148 putative penicillin-binding protein; penicillin-binding protein transpeptidase 1864032 5677419 Clos_1762 Alkaliphilus oremlandii OhILAs penicillin-binding protein transpeptidase YP_001513298.1 1861225 R 350688 CDS YP_001513299.1 158320792 5677420 complement(1864048..1864545) 1 NC_009922.1 KEGG: drm:Dred_2546 hypothetical protein; hypothetical protein 1864545 5677420 Clos_1763 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513299.1 1864048 R 350688 CDS YP_001513300.1 158320793 5676212 complement(1864564..1865406) 1 NC_009922.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 1865406 5676212 Clos_1764 Alkaliphilus oremlandii OhILAs rod shape-determining protein MreC YP_001513300.1 1864564 R 350688 CDS YP_001513301.1 158320794 5676213 complement(1865421..1866452) 1 NC_009922.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 1866452 5676213 Clos_1765 Alkaliphilus oremlandii OhILAs rod shape-determining protein MreB YP_001513301.1 1865421 R 350688 CDS YP_001513302.1 158320795 5676214 complement(1866481..1867179) 1 NC_009922.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 1867179 radC 5676214 radC Alkaliphilus oremlandii OhILAs DNA repair protein RadC YP_001513302.1 1866481 R 350688 CDS YP_001513303.1 158320796 5676215 complement(1867205..1867783) 1 NC_009922.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: cth:Cthe_0087 maf protein; maf protein 1867783 5676215 Clos_1767 Alkaliphilus oremlandii OhILAs maf protein YP_001513303.1 1867205 R 350688 CDS YP_001513304.1 158320797 5676216 complement(1867792..1868040) 1 NC_009922.1 hypothetical protein 1868040 5676216 Clos_1768 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513304.1 1867792 R 350688 CDS YP_001513305.1 158320798 5676217 complement(1868061..1868582) 1 NC_009922.1 PFAM: Heptaprenyl diphosphate synthase component I; KEGG: cbo:CBO0375 membrane protein; heptaprenyl diphosphate synthase component I 1868582 5676217 Clos_1769 Alkaliphilus oremlandii OhILAs heptaprenyl diphosphate synthase component I YP_001513305.1 1868061 R 350688 CDS YP_001513306.1 158320799 5676218 complement(1868814..1869638) 1 NC_009922.1 TIGRFAM: electron transport complex, RnfABCDGE type, B subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Fe-S cluster domain protein; KEGG: cdf:CD1142 electron transport complex protein; electron transport complex, RnfABCDGE type, B subunit 1869638 5676218 Clos_1770 Alkaliphilus oremlandii OhILAs electron transport complex, RnfABCDGE type, B subunit YP_001513306.1 1868814 R 350688 CDS YP_001513307.1 158320800 5676219 complement(1869651..1870232) 1 NC_009922.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: cdf:CD1141 electron transport complex protein; RnfABCDGE type electron transport complex subunit A 1870232 5676219 Clos_1771 Alkaliphilus oremlandii OhILAs RnfABCDGE type electron transport complex subunit A YP_001513307.1 1869651 R 350688 CDS YP_001513308.1 158320801 5676220 complement(1870249..1870848) 1 NC_009922.1 TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: cdf:CD1140 electron transport complex protein; RnfABCDGE type electron transport complex subunit E 1870848 5676220 Clos_1772 Alkaliphilus oremlandii OhILAs RnfABCDGE type electron transport complex subunit E YP_001513308.1 1870249 R 350688 CDS YP_001513309.1 158320802 5676221 complement(1870877..1871419) 1 NC_009922.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: cbo:CBO0370 electron transport complex protein; electron transport complex, RnfABCDGE type, G subunit 1871419 5676221 Clos_1773 Alkaliphilus oremlandii OhILAs electron transport complex, RnfABCDGE type, G subunit YP_001513309.1 1870877 R 350688 CDS YP_001513310.1 158320803 5678704 complement(1871423..1872364) 1 NC_009922.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: cdf:CD1138 electron transport complex protein; RnfABCDGE type electron transport complex subunit D 1872364 5678704 Clos_1774 Alkaliphilus oremlandii OhILAs RnfABCDGE type electron transport complex subunit D YP_001513310.1 1871423 R 350688 CDS YP_001513311.1 158320804 5678705 complement(1872385..1873713) 1 NC_009922.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: cdf:CD1137 electron transport complex protein; RnfABCDGE type electron transport complex subunit C 1873713 5678705 Clos_1775 Alkaliphilus oremlandii OhILAs RnfABCDGE type electron transport complex subunit C YP_001513311.1 1872385 R 350688 CDS YP_001513312.1 158320805 5678706 complement(1873978..1874871) 1 NC_009922.1 KEGG: cdf:CD1136 hypothetical protein; hypothetical protein 1874871 5678706 Clos_1776 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513312.1 1873978 R 350688 CDS YP_001513313.1 158320806 5678707 complement(1875104..1876228) 1 NC_009922.1 PFAM: NLP/P60 protein; SH3 domain protein; Variant SH3 domain protein; SH3 type 3 domain protein; KEGG: tte:TTE0880 cell wall-associated hydrolase (invasion-associated proteins); NLP/P60 protein 1876228 5678707 Clos_1777 Alkaliphilus oremlandii OhILAs NLP/P60 protein YP_001513313.1 1875104 R 350688 CDS YP_001513314.1 158320807 5678708 complement(1876351..1877073) 1 NC_009922.1 PFAM: protein of unknown function DUF28; KEGG: cdf:CD0795 hypothetical protein; hypothetical protein 1877073 5678708 Clos_1778 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513314.1 1876351 R 350688 CDS YP_001513315.1 158320808 5678709 complement(1877193..1877945) 1 NC_009922.1 TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; KEGG: amt:Amet_2234 NAD+ synthetase; NAD+ synthetase 1877945 5678709 Clos_1779 Alkaliphilus oremlandii OhILAs NAD+ synthetase YP_001513315.1 1877193 R 350688 CDS YP_001513316.1 158320809 5678710 1878088..1878450 1 NC_009922.1 KEGG: amt:Amet_2232 permease; permease 1878450 5678710 Clos_1780 Alkaliphilus oremlandii OhILAs permease YP_001513316.1 1878088 D 350688 CDS YP_001513317.1 158320810 5678711 1878450..1878809 1 NC_009922.1 KEGG: amt:Amet_2231 conserved hypothetical protein; hypothetical protein 1878809 5678711 Clos_1781 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513317.1 1878450 D 350688 CDS YP_001513318.1 158320811 5678712 complement(1878820..1879221) 1 NC_009922.1 PFAM: CoA-binding domain protein; KEGG: amt:Amet_2230 CoA-binding domain protein; CoA-binding domain-containing protein 1879221 5678712 Clos_1782 Alkaliphilus oremlandii OhILAs CoA-binding domain-containing protein YP_001513318.1 1878820 R 350688 CDS YP_001513319.1 158320812 5678713 complement(1879314..1879964) 1 NC_009922.1 PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: amt:Amet_2229 protein of unknown function UPF0029; hypothetical protein 1879964 5678713 Clos_1783 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513319.1 1879314 R 350688 CDS YP_001513320.1 158320813 5678436 complement(1880077..1880532) 1 NC_009922.1 PFAM: NUDIX hydrolase; KEGG: amt:Amet_2228 NUDIX hydrolase; NUDIX hydrolase 1880532 5678436 Clos_1784 Alkaliphilus oremlandii OhILAs NUDIX hydrolase YP_001513320.1 1880077 R 350688 CDS YP_001513321.1 158320814 5678437 complement(1880623..1881165) 1 NC_009922.1 PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: amt:Amet_2226 PBS lyase heat domain protein repeat-containing protein; HEAT repeat-containing PBS lyase 1881165 5678437 Clos_1785 Alkaliphilus oremlandii OhILAs HEAT repeat-containing PBS lyase YP_001513321.1 1880623 R 350688 CDS YP_001513322.1 158320815 5678438 complement(1881187..1882476) 1 NC_009922.1 PFAM: GTP-binding protein HSR1-related; KEGG: amt:Amet_2225 GTP-binding protein, HSR1-related; GTP-binding protein HSR1-related 1882476 5678438 Clos_1786 Alkaliphilus oremlandii OhILAs GTP-binding protein HSR1-related YP_001513322.1 1881187 R 350688 CDS YP_001513323.1 158320816 5678439 complement(1882572..1883249) 1 NC_009922.1 TIGRFAM: Sporulation protein YunB; KEGG: amt:Amet_2224 sporulation protein YunB; sporulation protein YunB 1883249 5678439 Clos_1787 Alkaliphilus oremlandii OhILAs sporulation protein YunB YP_001513323.1 1882572 R 350688 CDS YP_001513324.1 158320817 5678440 1883459..1886032 1 NC_009922.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: amt:Amet_2223 penicillin-binding protein, 1A family; 1A family penicillin-binding protein 1886032 5678440 Clos_1788 Alkaliphilus oremlandii OhILAs 1A family penicillin-binding protein YP_001513324.1 1883459 D 350688 CDS YP_001513325.1 158320818 5678441 complement(1886146..1886502) 1 NC_009922.1 TIGRFAM: Sporulation stage V protein AE; PFAM: SpoVA protein; KEGG: cpr:CPR_2017 stage V sporulation protein AE; sporulation stage V protein AE 1886502 5678441 Clos_1789 Alkaliphilus oremlandii OhILAs sporulation stage V protein AE YP_001513325.1 1886146 R 350688 CDS YP_001513326.1 158320819 5678442 complement(1886514..1887533) 1 NC_009922.1 PFAM: Stage V sporulation AD family protein; KEGG: tte:TTE1320 spore formation protein spoVAD; stage V sporulation protein AD 1887533 5678442 Clos_1790 Alkaliphilus oremlandii OhILAs stage V sporulation protein AD YP_001513326.1 1886514 R 350688 CDS YP_001513327.1 158320820 5678443 complement(1887547..1888002) 1 NC_009922.1 TIGRFAM: Sporulation stage V protein AC; PFAM: SpoVA protein; KEGG: cdf:CD0773 stage V sporulation protein AC; sporulation stage V protein AC 1888002 5678443 Clos_1791 Alkaliphilus oremlandii OhILAs sporulation stage V protein AC YP_001513327.1 1887547 R 350688 CDS YP_001513328.1 158320821 5678444 complement(1888201..1888608) 1 NC_009922.1 KEGG: oih:OB1835 stage V sporulation protein AB; stage V sporulation protein AB 1888608 5678444 Clos_1792 Alkaliphilus oremlandii OhILAs stage V sporulation protein AB YP_001513328.1 1888201 R 350688 CDS YP_001513329.1 158320822 5678445 complement(1888618..1889226) 1 NC_009922.1 KEGG: bat:BAS3981 stage V sporulation protein AA; stage V sporulation protein AA 1889226 5678445 Clos_1793 Alkaliphilus oremlandii OhILAs stage V sporulation protein AA YP_001513329.1 1888618 R 350688 CDS YP_001513330.1 158320823 5678504 complement(1889664..1890434) 1 NC_009922.1 TIGRFAM: RNA polymerase sigma-F type; RNA polymerase sigma-70; RNA polymerase sigma-B/F/G type; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cdf:CD0772 RNA polymerase sigma-F factor; FliA/WhiG family RNA polymerase sigma factor 1890434 5678504 Clos_1794 Alkaliphilus oremlandii OhILAs FliA/WhiG family RNA polymerase sigma factor YP_001513330.1 1889664 R 350688 CDS YP_001513331.1 158320824 5678505 complement(1890447..1890884) 1 NC_009922.1 binds to sigma F preventing its association with RNA polymerase during sporulation; anti-sigma F factor 1890884 5678505 Clos_1795 Alkaliphilus oremlandii OhILAs anti-sigma F factor YP_001513331.1 1890447 R 350688 CDS YP_001513332.1 158320825 5678506 complement(1890899..1891234) 1 NC_009922.1 TIGRFAM: anti-anti-sigma factor; Anti-sigma F factor antagonist; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cpr:CPR_2022 anti-sigma F factor antagonist; anti-sigma-factor antagonist 1891234 5678506 Clos_1796 Alkaliphilus oremlandii OhILAs anti-sigma-factor antagonist YP_001513332.1 1890899 R 350688 CDS YP_001513333.1 158320826 5678507 complement(1891393..1891950) 1 NC_009922.1 PFAM: methyladenine glycosylase; KEGG: tte:TTE0091 3-Methyladenine DNA glycosylase; DNA-3-methyladenine glycosylase I 1891950 5678507 Clos_1797 Alkaliphilus oremlandii OhILAs DNA-3-methyladenine glycosylase I YP_001513333.1 1891393 R 350688 CDS YP_001513334.1 158320827 5678508 complement(1892194..1892760) 1 NC_009922.1 PFAM: isochorismatase hydrolase; KEGG: aau:AAur_3924 putative isochorismatase family protein; isochorismatase hydrolase 1892760 5678508 Clos_1798 Alkaliphilus oremlandii OhILAs isochorismatase hydrolase YP_001513334.1 1892194 R 350688 CDS YP_001513335.1 158320828 5678509 complement(1892822..1893172) 1 NC_009922.1 hypothetical protein 1893172 5678509 Clos_1799 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513335.1 1892822 R 350688 CDS YP_001513336.1 158320829 5678510 complement(1893299..1894207) 1 NC_009922.1 PFAM: aminoglycoside phosphotransferase; KEGG: mba:Mbar_A1987 hypothetical protein; aminoglycoside phosphotransferase 1894207 5678510 Clos_1800 Alkaliphilus oremlandii OhILAs aminoglycoside phosphotransferase YP_001513336.1 1893299 R 350688 CDS YP_001513337.1 158320830 5678511 complement(1894269..1894766) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cac:CAC2509 predicted acetyltransferase; N-acetyltransferase GCN5 1894766 5678511 Clos_1801 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001513337.1 1894269 R 350688 CDS YP_001513338.1 158320831 5678512 complement(1894975..1895757) 1 NC_009922.1 hypothetical protein 1895757 5678512 Clos_1802 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513338.1 1894975 R 350688 CDS YP_001513339.1 158320832 5678513 complement(1896287..1896586) 1 NC_009922.1 KEGG: eca:ECA1285 hypothetical protein; hypothetical protein 1896586 5678513 Clos_1803 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513339.1 1896287 R 350688 CDS YP_001513340.1 158320833 5678779 complement(1896587..1897930) 1 NC_009922.1 PFAM: protein of unknown function DUF1446; KEGG: rpc:RPC_0825 protein of unknown function DUF1446; hypothetical protein 1897930 5678779 Clos_1804 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513340.1 1896587 R 350688 CDS YP_001513341.1 158320834 5678780 complement(1897942..1899276) 1 NC_009922.1 TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpc:RPC_0826 citrate transporter; CitMHS family citrate/H+ symporter 1899276 5678780 Clos_1805 Alkaliphilus oremlandii OhILAs CitMHS family citrate/H+ symporter YP_001513341.1 1897942 R 350688 CDS YP_001513342.1 158320835 5678781 complement(1899654..1900994) 1 NC_009922.1 KEGG: bcl:ABC0453 transcriptional regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; SMART: PAS domain containing protein; AAA ATPase; putative sigma-54 specific transcriptional regulator 1900994 5678781 Clos_1806 Alkaliphilus oremlandii OhILAs putative sigma-54 specific transcriptional regulator YP_001513342.1 1899654 R 350688 CDS YP_001513343.1 158320836 5678782 complement(1901288..1902007) 1 NC_009922.1 KEGG: cth:Cthe_2121 hypothetical protein; hypothetical protein 1902007 5678782 Clos_1807 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513343.1 1901288 R 350688 CDS YP_001513344.1 158320837 5678783 complement(1902218..1903597) 1 NC_009922.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cpr:CPR_2514 MATE efflux family protein; MATE efflux family protein 1903597 5678783 Clos_1808 Alkaliphilus oremlandii OhILAs MATE efflux family protein YP_001513344.1 1902218 R 350688 CDS YP_001513345.1 158320838 5678784 complement(1903782..1904294) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY3675 hypothetical protein; N-acetyltransferase GCN5 1904294 5678784 Clos_1809 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001513345.1 1903782 R 350688 CDS YP_001513346.1 158320839 5678785 complement(1904321..1904665) 1 NC_009922.1 PFAM: membrane protein of unknown function; KEGG: sat:SYN_01406 hypothetical membrane protein; hypothetical protein 1904665 5678785 Clos_1810 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513346.1 1904321 R 350688 CDS YP_001513347.1 158320840 5678786 1904767..1905264 1 NC_009922.1 TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; KEGG: chy:CHY_0805 molybdenum cofactor synthesis domain protein; molybdenum cofactor synthesis domain-containing protein 1905264 5678786 Clos_1811 Alkaliphilus oremlandii OhILAs molybdenum cofactor synthesis domain-containing protein YP_001513347.1 1904767 D 350688 CDS YP_001513348.1 158320841 5678787 complement(1905347..1905826) 1 NC_009922.1 TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: dsy:DSY3965 hypothetical protein; molybdenum cofactor biosynthesis protein C 1905826 5678787 Clos_1812 Alkaliphilus oremlandii OhILAs molybdenum cofactor biosynthesis protein C YP_001513348.1 1905347 R 350688 CDS YP_001513349.1 158320842 5678788 complement(1905853..1907031) 1 NC_009922.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 1907031 5678788 Clos_1813 Alkaliphilus oremlandii OhILAs thiamine biosynthesis protein ThiI YP_001513349.1 1905853 R 350688 CDS YP_001513350.1 158320843 5676645 complement(1907039..1908196) 1 NC_009922.1 PFAM: aminotransferase class V; KEGG: cdf:CD0753 putative cysteine desulfurase; class V aminotransferase 1908196 5676645 Clos_1814 Alkaliphilus oremlandii OhILAs class V aminotransferase YP_001513350.1 1907039 R 350688 CDS YP_001513351.1 158320844 5676646 complement(1908344..1908955) 1 NC_009922.1 PFAM: protein of unknown function DUF1121; KEGG: gur:Gura_4126 protein of unknown function DUF1121; hypothetical protein 1908955 5676646 Clos_1815 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513351.1 1908344 R 350688 CDS YP_001513352.1 158320845 5676647 1909327..1910319 1 NC_009922.1 PFAM: Asparaginase/glutaminase; KEGG: cbo:CBO2516 L-asparaginase; asparaginase/glutaminase 1910319 5676647 Clos_1816 Alkaliphilus oremlandii OhILAs asparaginase/glutaminase YP_001513352.1 1909327 D 350688 CDS YP_001513353.1 158320846 5676648 complement(1910368..1912404) 1 NC_009922.1 PFAM: UvrD/REP helicase; KEGG: cdf:CD0749 putative ATP-dependent DNA helicase; UvrD/REP helicase 1912404 5676648 Clos_1817 Alkaliphilus oremlandii OhILAs UvrD/REP helicase YP_001513353.1 1910368 R 350688 CDS YP_001513354.1 158320847 5676649 complement(1912492..1913901) 1 NC_009922.1 PFAM: S-layer domain protein; KEGG: cth:Cthe_2809 glycoside hydrolase, family 16; S-layer domain-containing protein 1913901 5676649 Clos_1818 Alkaliphilus oremlandii OhILAs S-layer domain-containing protein YP_001513354.1 1912492 R 350688 CDS YP_001513355.1 158320848 5676650 1914077..1915114 1 NC_009922.1 KEGG: ctc:CTC00967 hypothetical protein; exonuclease-like protein 1915114 5676650 Clos_1819 Alkaliphilus oremlandii OhILAs exonuclease-like protein YP_001513355.1 1914077 D 350688 CDS YP_001513356.1 158320849 5675987 complement(1916671..1917246) 1 NC_009922.1 KEGG: slo:Shew_3054 hypothetical protein; hypothetical protein 1917246 5675987 Clos_1820 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513356.1 1916671 R 350688 CDS YP_001513357.1 158320850 5675988 complement(1917271..1917642) 1 NC_009922.1 PFAM: helix-turn-helix domain protein; KEGG: gka:GK0493 transcriptional regulator; XRE family transcriptional regulator 1917642 5675988 Clos_1821 Alkaliphilus oremlandii OhILAs XRE family transcriptional regulator YP_001513357.1 1917271 R 350688 CDS YP_001513358.1 158320851 5678161 1917809..1918036 1 NC_009922.1 hypothetical protein 1918036 5678161 Clos_1822 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513358.1 1917809 D 350688 CDS YP_001513359.1 158320852 5678162 1918503..1919057 1 NC_009922.1 hypothetical protein 1919057 5678162 Clos_1823 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513359.1 1918503 D 350688 CDS YP_001513360.1 158320853 5678163 1919021..1919497 1 NC_009922.1 hypothetical protein 1919497 5678163 Clos_1824 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513360.1 1919021 D 350688 CDS YP_001513361.1 158320854 5678164 1919948..1920760 1 NC_009922.1 hypothetical protein 1920760 5678164 Clos_1825 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513361.1 1919948 D 350688 CDS YP_001513362.1 158320855 5678165 1921333..1922367 1 NC_009922.1 KEGG: btl:BALH_0258 possible Rep protein; hypothetical protein 1922367 5678165 Clos_1826 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513362.1 1921333 D 350688 CDS YP_001513363.1 158320856 5678166 1922364..1923302 1 NC_009922.1 PFAM: integrase family protein; KEGG: chy:CHY_1792 tyrosine recombinase XerC; integrase family protein 1923302 5678166 Clos_1827 Alkaliphilus oremlandii OhILAs integrase family protein YP_001513363.1 1922364 D 350688 CDS YP_001513364.1 158320857 5676012 complement(1929985..1930896) 1 NC_009922.1 PFAM: phosphate acetyl/butaryl transferase; KEGG: cdf:CD0715 putative phosphate butyryltransferase; phosphate butyryltransferase 1930896 5676012 Clos_1828 Alkaliphilus oremlandii OhILAs phosphate butyryltransferase YP_001513364.1 1929985 R 350688 CDS YP_001513365.1 158320858 5676013 complement(1931206..1932345) 1 NC_009922.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cdf:CD0714 hypothetical protein; hypothetical protein 1932345 5676013 Clos_1829 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513365.1 1931206 R 350688 CDS YP_001513366.1 158320859 5676707 complement(1932359..1933123) 1 NC_009922.1 hypothetical protein 1933123 5676707 Clos_1830 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513366.1 1932359 R 350688 CDS YP_001513367.1 158320860 5676708 complement(1933111..1934907) 1 NC_009922.1 PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cdf:CD0713 putative adenosylcobamide-dependent radical SAM superfamily protein; radical SAM domain-containing protein 1934907 5676708 Clos_1831 Alkaliphilus oremlandii OhILAs radical SAM domain-containing protein YP_001513367.1 1933111 R 350688 CDS YP_001513368.1 158320861 5676709 1935141..1935743 1 NC_009922.1 KEGG: cpr:CPR_2292 hypothetical protein; hypothetical protein 1935743 5676709 Clos_1832 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513368.1 1935141 D 350688 CDS YP_001513369.1 158320862 5676710 1936084..1936278 1 NC_009922.1 hypothetical protein 1936278 5676710 Clos_1833 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513369.1 1936084 D 350688 CDS YP_001513370.1 158320863 5676711 complement(1936374..1937567) 1 NC_009922.1 KEGG: cdf:CD0712 hypothetical protein; hypothetical protein 1937567 5676711 Clos_1834 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513370.1 1936374 R 350688 CDS YP_001513371.1 158320864 5676712 complement(1937627..1938082) 1 NC_009922.1 PFAM: protein of unknown function DUF523; KEGG: cno:NT01CX_1774 hypothetical protein; hypothetical protein 1938082 5676712 Clos_1835 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513371.1 1937627 R 350688 CDS YP_001513372.1 158320865 5676713 complement(1938109..1940481) 1 NC_009922.1 KEGG: cdf:CD0709 putative DNA mismatch repair protein; TIGRFAM: MutS2 family protein; PFAM: DNA mismatch repair protein MutS domain protein; Smr protein/MutS2; SMART: MutS III domain protein; MutS2 family protein 1940481 5676713 Clos_1836 Alkaliphilus oremlandii OhILAs MutS2 family protein YP_001513372.1 1938109 R 350688 CDS YP_001513373.1 158320866 5676714 complement(1940680..1942488) 1 NC_009922.1 TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: cth:Cthe_1007 GTP-binding protein TypA; GTP-binding protein TypA 1942488 5676714 Clos_1837 Alkaliphilus oremlandii OhILAs GTP-binding protein TypA YP_001513373.1 1940680 R 350688 CDS YP_001513374.1 158320867 5676715 complement(1942763..1944355) 1 NC_009922.1 PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: drm:Dred_1436 FAD dependent oxidoreductase; FAD dependent oxidoreductase 1944355 5676715 Clos_1838 Alkaliphilus oremlandii OhILAs FAD dependent oxidoreductase YP_001513374.1 1942763 R 350688 CDS YP_001513375.1 158320868 5676716 complement(1944384..1945700) 1 NC_009922.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: drm:Dred_1437 HI0933 family protein; hypothetical protein 1945700 5676716 Clos_1839 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513375.1 1944384 R 350688 CDS YP_001513376.1 158320869 5675927 complement(1945820..1946380) 1 NC_009922.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_1771 rubrerythrin; rubrerythrin 1946380 5675927 Clos_1840 Alkaliphilus oremlandii OhILAs rubrerythrin YP_001513376.1 1945820 R 350688 CDS YP_001513377.1 158320870 5675928 complement(1946527..1947027) 1 NC_009922.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: mth:MTH1484 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 1947027 5675928 Clos_1841 Alkaliphilus oremlandii OhILAs pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001513377.1 1946527 R 350688 CDS YP_001513378.1 158320871 5675929 complement(1947213..1947683) 1 NC_009922.1 PFAM: nucleoside recognition domain protein; KEGG: gka:GK3080 hypothetical protein; nucleoside recognition domain-containing protein 1947683 5675929 Clos_1842 Alkaliphilus oremlandii OhILAs nucleoside recognition domain-containing protein YP_001513378.1 1947213 R 350688 CDS YP_001513379.1 158320872 5675930 complement(1947680..1948105) 1 NC_009922.1 PFAM: nucleoside recognition domain protein; KEGG: bcl:ABC3053 hypothetical protein; nucleoside recognition domain-containing protein 1948105 5675930 Clos_1843 Alkaliphilus oremlandii OhILAs nucleoside recognition domain-containing protein YP_001513379.1 1947680 R 350688 CDS YP_001513380.1 158320873 5675931 1948318..1948731 1 NC_009922.1 PFAM: superoxide dismutase copper/zinc binding; KEGG: ctc:CTC00590 superoxide dismutase (Cu-Zn); copper/zinc binding superoxide dismutase 1948731 5675931 Clos_1844 Alkaliphilus oremlandii OhILAs copper/zinc binding superoxide dismutase YP_001513380.1 1948318 D 350688 CDS YP_001513381.1 158320874 5675932 complement(1948708..1950297) 1 NC_009922.1 PFAM: Resolvase domain; Recombinase; KEGG: cac:CAC1228 site-specific DNA recombinase; recombinase 1950297 5675932 Clos_1845 Alkaliphilus oremlandii OhILAs recombinase YP_001513381.1 1948708 R 350688 CDS YP_001513382.1 158320875 5675933 complement(1950816..1951355) 1 NC_009922.1 hypothetical protein 1951355 5675933 Clos_1846 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513382.1 1950816 R 350688 CDS YP_001513383.1 158320876 5675934 complement(1951376..1952017) 1 NC_009922.1 hypothetical protein 1952017 5675934 Clos_1847 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513383.1 1951376 R 350688 CDS YP_001513384.1 158320877 5675935 complement(1952289..1952717) 1 NC_009922.1 hypothetical protein 1952717 5675935 Clos_1848 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513384.1 1952289 R 350688 CDS YP_001513385.1 158320878 5675936 complement(1953024..1954424) 1 NC_009922.1 KEGG: msi:Msm_0058 DNA helicase II; hypothetical protein 1954424 5675936 Clos_1849 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513385.1 1953024 R 350688 CDS YP_001513386.1 158320879 5675999 complement(1954500..1954829) 1 NC_009922.1 hypothetical protein 1954829 5675999 Clos_1850 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513386.1 1954500 R 350688 CDS YP_001513387.1 158320880 5676000 complement(1954846..1955127) 1 NC_009922.1 hypothetical protein 1955127 5676000 Clos_1851 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513387.1 1954846 R 350688 CDS YP_001513388.1 158320881 5676001 complement(1955630..1955848) 1 NC_009922.1 PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 1955848 5676001 Clos_1852 Alkaliphilus oremlandii OhILAs XRE family transcriptional regulator YP_001513388.1 1955630 R 350688 CDS YP_001513389.1 158320882 5676002 1956001..1956378 1 NC_009922.1 PFAM: helix-turn-helix domain protein; KEGG: gka:GK0493 transcriptional regulator; XRE family transcriptional regulator 1956378 5676002 Clos_1853 Alkaliphilus oremlandii OhILAs XRE family transcriptional regulator YP_001513389.1 1956001 D 350688 CDS YP_001513390.1 158320883 5676003 1957127..1957945 1 NC_009922.1 hypothetical protein 1957945 5676003 Clos_1854 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513390.1 1957127 D 350688 CDS YP_001513391.1 158320884 5676004 complement(1958381..1959370) 1 NC_009922.1 KEGG: ngo:NGO1795 DNA (cytosine-5-)-methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 1959370 5676004 Clos_1855 Alkaliphilus oremlandii OhILAs DNA-cytosine methyltransferase YP_001513391.1 1958381 R 350688 CDS YP_001513392.1 158320885 5676005 complement(1959384..1960232) 1 NC_009922.1 KEGG: deb:DehaBAV1_0080 type II site-specific deoxyribonuclease; type II site-specific deoxyribonuclease 1960232 5676005 Clos_1856 Alkaliphilus oremlandii OhILAs type II site-specific deoxyribonuclease YP_001513392.1 1959384 R 350688 CDS YP_001513393.1 158320886 5676006 complement(1960822..1966533) 1 NC_009922.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: pfl:PFL_3016 helicase; DEAD/DEAH box helicase 1966533 5676006 Clos_1857 Alkaliphilus oremlandii OhILAs DEAD/DEAH box helicase YP_001513393.1 1960822 R 350688 CDS YP_001513394.1 158320887 5676007 complement(1966533..1967522) 1 NC_009922.1 hypothetical protein 1967522 5676007 Clos_1858 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513394.1 1966533 R 350688 CDS YP_001513395.1 158320888 5676008 complement(1967519..1969570) 1 NC_009922.1 KEGG: cef:CE1218 hypothetical protein; hypothetical protein 1969570 5676008 Clos_1859 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513395.1 1967519 R 350688 CDS YP_001513396.1 158320889 5677961 complement(1970252..1970869) 1 NC_009922.1 hypothetical protein 1970869 5677961 Clos_1860 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513396.1 1970252 R 350688 CDS YP_001513397.1 158320890 5677962 complement(1971040..1971618) 1 NC_009922.1 KEGG: stt:t0349 hypothetical protein; hypothetical protein 1971618 5677962 Clos_1861 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513397.1 1971040 R 350688 CDS YP_001513398.1 158320891 5677963 complement(1971961..1972236) 1 NC_009922.1 hypothetical protein 1972236 5677963 Clos_1862 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513398.1 1971961 R 350688 CDS YP_001513399.1 158320892 5677964 complement(1972414..1973178) 1 NC_009922.1 KEGG: bfr:BF3456 hypothetical protein; hypothetical protein 1973178 5677964 Clos_1863 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513399.1 1972414 R 350688 CDS YP_001513400.1 158320893 5677965 complement(1973266..1974069) 1 NC_009922.1 hypothetical protein 1974069 5677965 Clos_1864 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513400.1 1973266 R 350688 CDS YP_001513401.1 158320894 5677966 complement(1974250..1974396) 1 NC_009922.1 hypothetical protein 1974396 5677966 Clos_1865 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513401.1 1974250 R 350688 CDS YP_001513402.1 158320895 5677967 complement(1974510..1975421) 1 NC_009922.1 hypothetical protein 1975421 5677967 Clos_1866 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513402.1 1974510 R 350688 CDS YP_001513403.1 158320896 5677968 complement(1976557..1979814) 1 NC_009922.1 PFAM: protein of unknown function DUF450; KEGG: ajs:Ajs_1568 protein of unknown function DUF450; hypothetical protein 1979814 5677968 Clos_1867 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513403.1 1976557 R 350688 CDS YP_001513404.1 158320897 5677969 complement(1980158..1982101) 1 NC_009922.1 KEGG: cch:Cag_0308 hypothetical protein; hypothetical protein 1982101 5677969 Clos_1868 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513404.1 1980158 R 350688 CDS YP_001513405.1 158320898 5677970 complement(1982124..1982399) 1 NC_009922.1 KEGG: cpf:CPF_2595 hypothetical protein; hypothetical protein 1982399 5677970 Clos_1869 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513405.1 1982124 R 350688 CDS YP_001513406.1 158320899 5678416 complement(1982478..1982795) 1 NC_009922.1 KEGG: aav:Aave_0087 hypothetical protein; hypothetical protein 1982795 5678416 Clos_1870 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513406.1 1982478 R 350688 CDS YP_001513407.1 158320900 5678417 complement(1982813..1983364) 1 NC_009922.1 KEGG: lic:LIC12888 hypothetical protein; hypothetical protein 1983364 5678417 Clos_1871 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513407.1 1982813 R 350688 CDS YP_001513408.1 158320901 5678418 complement(1983364..1983909) 1 NC_009922.1 hypothetical protein 1983909 5678418 Clos_1872 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513408.1 1983364 R 350688 CDS YP_001513409.1 158320902 5678419 complement(1984289..1985518) 1 NC_009922.1 hypothetical protein 1985518 5678419 Clos_1873 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513409.1 1984289 R 350688 CDS YP_001513410.1 158320903 5678420 complement(1985662..1986891) 1 NC_009922.1 KEGG: cac:CAC2045 secreted protein containing domain of murein hydrolase (MltA homolog); hypothetical protein 1986891 5678420 Clos_1874 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513410.1 1985662 R 350688 CDS YP_001513411.1 158320904 5678421 complement(1986946..1987947) 1 NC_009922.1 hypothetical protein 1987947 5678421 Clos_1875 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513411.1 1986946 R 350688 CDS YP_001513412.1 158320905 5678422 complement(1988179..1988463) 1 NC_009922.1 hypothetical protein 1988463 5678422 Clos_1876 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513412.1 1988179 R 350688 CDS YP_001513413.1 158320906 5678423 complement(1988466..1988750) 1 NC_009922.1 hypothetical protein 1988750 5678423 Clos_1877 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513413.1 1988466 R 350688 CDS YP_001513414.1 158320907 5678424 complement(1988769..1990166) 1 NC_009922.1 KEGG: ddi:DDBDRAFT_0206221 hypothetical protein; hypothetical protein 1990166 5678424 Clos_1878 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513414.1 1988769 R 350688 CDS YP_001513415.1 158320908 5678425 complement(1990222..1992051) 1 NC_009922.1 KEGG: dsy:DSY0038 hypothetical protein; hypothetical protein 1992051 5678425 Clos_1879 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513415.1 1990222 R 350688 CDS YP_001513416.1 158320909 5678387 complement(1992051..1992740) 1 NC_009922.1 hypothetical protein 1992740 5678387 Clos_1880 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513416.1 1992051 R 350688 CDS YP_001513417.1 158320910 5678388 complement(1992744..1993100) 1 NC_009922.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: csc:Csac_1336 single-strand binding protein; single-strand binding protein 1993100 5678388 Clos_1881 Alkaliphilus oremlandii OhILAs single-strand binding protein YP_001513417.1 1992744 R 350688 CDS YP_001513418.1 158320911 5678389 complement(1993192..1993716) 1 NC_009922.1 PFAM: peptidase A24A prepilin type IV; KEGG: bha:BH3035 leader peptidase (prepilin peptidase) / N-methyltransferase; peptidase A24A prepilin type IV 1993716 5678389 Clos_1882 Alkaliphilus oremlandii OhILAs peptidase A24A prepilin type IV YP_001513418.1 1993192 R 350688 CDS YP_001513419.1 158320912 5678390 complement(1993784..1997539) 1 NC_009922.1 KEGG: csc:Csac_2638 PKD domain containing protein; hypothetical protein 1997539 5678390 Clos_1883 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513419.1 1993784 R 350688 CDS YP_001513420.1 158320913 5678391 complement(1997523..2000342) 1 NC_009922.1 hypothetical protein 2000342 5678391 Clos_1884 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513420.1 1997523 R 350688 CDS YP_001513421.1 158320914 5678392 complement(2000413..2001621) 1 NC_009922.1 PFAM: S-layer domain protein; KEGG: swo:Swol_1963 hypothetical protein; S-layer domain-containing protein 2001621 5678392 Clos_1885 Alkaliphilus oremlandii OhILAs S-layer domain-containing protein YP_001513421.1 2000413 R 350688 CDS YP_001513422.1 158320915 5678393 complement(2001910..2002542) 1 NC_009922.1 KEGG: cdf:CD0908 phage protein; hypothetical protein 2002542 5678393 Clos_1886 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513422.1 2001910 R 350688 CDS YP_001513423.1 158320916 5678394 complement(2002666..2002848) 1 NC_009922.1 KEGG: hypothetical protein; hypothetical protein 2002848 5678394 Clos_1887 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513423.1 2002666 R 350688 CDS YP_001513424.1 158320917 5678395 complement(2003057..2003434) 1 NC_009922.1 KEGG: tva:TVAG_192230 viral A-type inclusion protein, putative; hypothetical protein 2003434 5678395 Clos_1888 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513424.1 2003057 R 350688 CDS YP_001513425.1 158320918 5678396 complement(2003611..2004798) 1 NC_009922.1 KEGG: cch:Cag_0519 hypothetical protein; hypothetical protein 2004798 5678396 Clos_1889 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513425.1 2003611 R 350688 CDS YP_001513426.1 158320919 5678750 complement(2005343..2006122) 1 NC_009922.1 KEGG: bce:BC0397 hypothetical cytosolic protein; hypothetical protein 2006122 5678750 Clos_1890 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513426.1 2005343 R 350688 CDS YP_001513427.1 158320920 5678751 complement(2006170..2006697) 1 NC_009922.1 KEGG: tpe:Tpen_1392 hypothetical protein; hypothetical protein 2006697 5678751 Clos_1891 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513427.1 2006170 R 350688 CDS YP_001513428.1 158320921 5678752 complement(2007098..2007550) 1 NC_009922.1 hypothetical protein 2007550 5678752 Clos_1892 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513428.1 2007098 R 350688 CDS YP_001513429.1 158320922 5678753 complement(2007863..2008672) 1 NC_009922.1 PFAM: Integrase catalytic region; KEGG: dsy:DSY3295 hypothetical protein; integrase catalytic region 2008672 5678753 Clos_1893 Alkaliphilus oremlandii OhILAs integrase catalytic region YP_001513429.1 2007863 R 350688 CDS YP_001513430.1 158320923 5678754 complement(2008735..2009028) 1 NC_009922.1 PFAM: transposase IS3/IS911 family protein; KEGG: dsy:DSY4613 hypothetical protein; transposase IS3/IS911 family protein 2009028 5678754 Clos_1894 Alkaliphilus oremlandii OhILAs transposase IS3/IS911 family protein YP_001513430.1 2008735 R 350688 CDS YP_001513431.1 158320924 5678755 complement(2009161..2009607) 1 NC_009922.1 KEGG: cbo:CBO0943 membrane protein; hypothetical protein 2009607 5678755 Clos_1895 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513431.1 2009161 R 350688 CDS YP_001513432.1 158320925 5678756 complement(2009940..2010290) 1 NC_009922.1 PFAM: Domain of unknown function DUF1791; KEGG: csc:Csac_1646 hypothetical protein; hypothetical protein 2010290 5678756 Clos_1896 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513432.1 2009940 R 350688 CDS YP_001513433.1 158320926 5678757 complement(2010940..2012211) 1 NC_009922.1 TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: rci:RCIX2529 C-5 cytosine-specific DNA methyltransferase; DNA-cytosine methyltransferase 2012211 5678757 Clos_1897 Alkaliphilus oremlandii OhILAs DNA-cytosine methyltransferase YP_001513433.1 2010940 R 350688 CDS YP_001513434.1 158320927 5678758 complement(2012357..2013898) 1 NC_009922.1 hypothetical protein 2013898 5678758 Clos_1898 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513434.1 2012357 R 350688 CDS YP_001513435.1 158320928 5678759 complement(2013906..2016023) 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; KEGG: azo:azo0358 putative two-component sensor kinase; histidine kinase 2016023 5678759 Clos_1899 Alkaliphilus oremlandii OhILAs histidine kinase YP_001513435.1 2013906 R 350688 CDS YP_001513436.1 158320929 5676754 complement(2017048..2017254) 1 NC_009922.1 hypothetical protein 2017254 5676754 Clos_1900 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513436.1 2017048 R 350688 CDS YP_001513437.1 158320930 5676755 complement(2017297..2017983) 1 NC_009922.1 hypothetical protein 2017983 5676755 Clos_1901 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513437.1 2017297 R 350688 CDS YP_001513438.1 158320931 5676756 complement(2018017..2018538) 1 NC_009922.1 hypothetical protein 2018538 5676756 Clos_1902 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513438.1 2018017 R 350688 CDS YP_001513439.1 158320932 5676757 complement(2018541..2018921) 1 NC_009922.1 hypothetical protein 2018921 5676757 Clos_1903 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513439.1 2018541 R 350688 CDS YP_001513440.1 158320933 5676758 complement(2018951..2019172) 1 NC_009922.1 hypothetical protein 2019172 5676758 Clos_1904 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513440.1 2018951 R 350688 CDS YP_001513441.1 158320934 5676759 complement(2019221..2020066) 1 NC_009922.1 KEGG: tte:TTE2067 hypothetical protein; hypothetical protein 2020066 5676759 Clos_1905 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513441.1 2019221 R 350688 CDS YP_001513442.1 158320935 5676760 complement(2020073..2020933) 1 NC_009922.1 KEGG: cac:CAC1979 predicted membrane protein; hypothetical protein 2020933 5676760 Clos_1906 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513442.1 2020073 R 350688 CDS YP_001513443.1 158320936 5676761 complement(2020908..2022260) 1 NC_009922.1 PFAM: type II secretion system protein E; KEGG: cac:CAC1980 predicted ATPase involved in pili biogenesis; type II secretion system protein E 2022260 5676761 Clos_1907 Alkaliphilus oremlandii OhILAs type II secretion system protein E YP_001513443.1 2020908 R 350688 CDS YP_001513444.1 158320937 5676762 complement(2022257..2023519) 1 NC_009922.1 KEGG: cac:CAC1981 hypothetical protein; hypothetical protein 2023519 5676762 Clos_1908 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513444.1 2022257 R 350688 CDS YP_001513445.1 158320938 5676763 complement(2023503..2023847) 1 NC_009922.1 hypothetical protein 2023847 5676763 Clos_1909 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513445.1 2023503 R 350688 CDS YP_001513446.1 158320939 5676917 complement(2024082..2024921) 1 NC_009922.1 KEGG: gtn:GTNG_3455 TraL; hypothetical protein 2024921 5676917 Clos_1910 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513446.1 2024082 R 350688 CDS YP_001513447.1 158320940 5676918 complement(2025032..2025361) 1 NC_009922.1 hypothetical protein 2025361 5676918 Clos_1911 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513447.1 2025032 R 350688 CDS YP_001513448.1 158320941 5676919 complement(2025379..2026851) 1 NC_009922.1 PFAM: TRAG family protein; KEGG: csc:Csac_1400 TraG family protein; TRAG family protein 2026851 5676919 Clos_1912 Alkaliphilus oremlandii OhILAs TRAG family protein YP_001513448.1 2025379 R 350688 CDS YP_001513449.1 158320942 5676920 complement(2026867..2027313) 1 NC_009922.1 hypothetical protein 2027313 5676920 Clos_1913 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513449.1 2026867 R 350688 CDS YP_001513450.1 158320943 5676921 complement(2027825..2029114) 1 NC_009922.1 PFAM: Relaxase/mobilization nuclease family protein; KEGG: cbo:CBOP12 possible mobilisation protein; relaxase/mobilization nuclease family protein 2029114 5676921 Clos_1914 Alkaliphilus oremlandii OhILAs relaxase/mobilization nuclease family protein YP_001513450.1 2027825 R 350688 CDS YP_001513451.1 158320944 5676922 complement(2029198..2029527) 1 NC_009922.1 KEGG: cbo:CBOP11 possible mobilisation protein; putative mobilisation protein 2029527 5676922 Clos_1915 Alkaliphilus oremlandii OhILAs putative mobilisation protein YP_001513451.1 2029198 R 350688 CDS YP_001513452.1 158320945 5676923 complement(2030202..2030387) 1 NC_009922.1 hypothetical protein 2030387 5676923 Clos_1916 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513452.1 2030202 R 350688 CDS YP_001513453.1 158320946 5676924 complement(2030563..2030787) 1 NC_009922.1 KEGG: aau:AAur_3080 hypothetical protein; hypothetical protein 2030787 5676924 Clos_1917 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513453.1 2030563 R 350688 CDS YP_001513454.1 158320947 5676925 complement(2031077..2031343) 1 NC_009922.1 hypothetical protein 2031343 5676925 Clos_1918 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513454.1 2031077 R 350688 CDS YP_001513455.1 158320948 5676926 complement(2031583..2032812) 1 NC_009922.1 PFAM: zinc finger CHC2-family protein; KEGG: dsy:DSY4633 hypothetical protein; zinc finger CHC2-family protein 2032812 5676926 Clos_1919 Alkaliphilus oremlandii OhILAs zinc finger CHC2-family protein YP_001513455.1 2031583 R 350688 CDS YP_001513456.1 158320949 5677630 complement(2032895..2033257) 1 NC_009922.1 hypothetical protein 2033257 5677630 Clos_1920 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513456.1 2032895 R 350688 CDS YP_001513457.1 158320950 5677631 complement(2033414..2034181) 1 NC_009922.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dsy:DSY0147 hypothetical protein; filamentation induced by cAMP protein fic 2034181 5677631 Clos_1921 Alkaliphilus oremlandii OhILAs filamentation induced by cAMP protein fic YP_001513457.1 2033414 R 350688 CDS YP_001513458.1 158320951 5677632 complement(2034195..2034677) 1 NC_009922.1 hypothetical protein 2034677 5677632 Clos_1922 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513458.1 2034195 R 350688 CDS YP_001513459.1 158320952 5677633 complement(2034749..2035756) 1 NC_009922.1 PFAM: ParB domain protein nuclease; KEGG: ctc:CTC01936 chromosome partitioning parB family protein; nuclease 2035756 5677633 Clos_1923 Alkaliphilus oremlandii OhILAs nuclease YP_001513459.1 2034749 R 350688 CDS YP_001513460.1 158320953 5677634 complement(2035749..2036546) 1 NC_009922.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: ctc:CTC01937 sporulation initiation inhibitor soj family protein; cobyrinic acid ac-diamide synthase 2036546 5677634 Clos_1924 Alkaliphilus oremlandii OhILAs cobyrinic acid ac-diamide synthase YP_001513460.1 2035749 R 350688 CDS YP_001513461.1 158320954 5677635 complement(2036890..2038074) 1 NC_009922.1 hypothetical protein 2038074 5677635 Clos_1925 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513461.1 2036890 R 350688 CDS YP_001513462.1 158320955 5677636 complement(2038093..2038743) 1 NC_009922.1 hypothetical protein 2038743 5677636 Clos_1926 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513462.1 2038093 R 350688 CDS YP_001513463.1 158320956 5677638 complement(2039457..2039945) 1 NC_009922.1 hypothetical protein 2039945 5677638 Clos_1928 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513463.1 2039457 R 350688 CDS YP_001513464.1 158320957 5677639 complement(2040083..2040628) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bur:Bcep18194_B0448 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2040628 5677639 Clos_1929 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001513464.1 2040083 R 350688 CDS YP_001513465.1 158320958 5677592 complement(2040682..2041116) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2041116 5677592 Clos_1930 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001513465.1 2040682 R 350688 CDS YP_001513466.1 158320959 5677593 complement(2041238..2041651) 1 NC_009922.1 hypothetical protein 2041651 5677593 Clos_1931 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513466.1 2041238 R 350688 CDS YP_001513467.1 158320960 5677594 complement(2041705..2042256) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pae:PA2455 hypothetical protein; N-acetyltransferase GCN5 2042256 5677594 Clos_1932 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001513467.1 2041705 R 350688 CDS YP_001513468.1 158320961 5677595 complement(2042474..2042740) 1 NC_009922.1 hypothetical protein 2042740 5677595 Clos_1933 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513468.1 2042474 R 350688 CDS YP_001513469.1 158320962 5677597 complement(2043284..2043814) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cpr:CPR_0858 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2043814 5677597 Clos_1935 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001513469.1 2043284 R 350688 CDS YP_001513470.1 158320963 5677598 complement(2043915..2044976) 1 NC_009922.1 TIGRFAM: magnesium and cobalt transport protein CorA; PFAM: Mg2 transporter protein CorA family protein; KEGG: cph:Cpha266_1912 magnesium and cobalt transport protein CorA; magnesium and cobalt transport protein CorA 2044976 5677598 Clos_1936 Alkaliphilus oremlandii OhILAs magnesium and cobalt transport protein CorA YP_001513470.1 2043915 R 350688 CDS YP_001513471.1 158320964 5677599 complement(2045174..2046019) 1 NC_009922.1 PFAM: alpha/beta hydrolase fold; KEGG: ctc:CTC01150 non-heme chloroperoxidase; alpha/beta hydrolase 2046019 5677599 Clos_1937 Alkaliphilus oremlandii OhILAs alpha/beta hydrolase YP_001513471.1 2045174 R 350688 CDS YP_001513472.1 158320965 5677600 complement(2046105..2047286) 1 NC_009922.1 PFAM: protein of unknown function UPF0027; KEGG: cth:Cthe_0250 protein of unknown function UPF0027; hypothetical protein 2047286 5677600 Clos_1938 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513472.1 2046105 R 350688 CDS YP_001513473.1 158320966 5677601 complement(2047671..2048264) 1 NC_009922.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 2048264 5677601 Clos_1939 Alkaliphilus oremlandii OhILAs 30S ribosomal protein S4 YP_001513473.1 2047671 R 350688 CDS YP_001513474.1 158320967 5676563 complement(2048566..2049519) 1 NC_009922.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: tde:TDE2401 hypothetical protein; NAD-dependent epimerase/dehydratase 2049519 5676563 Clos_1940 Alkaliphilus oremlandii OhILAs NAD-dependent epimerase/dehydratase YP_001513474.1 2048566 R 350688 CDS YP_001513475.1 158320968 5676564 complement(2049701..2052631) 1 NC_009922.1 PFAM: peptidase M16 domain protein; Peptidase M16C associated domain protein; KEGG: cno:NT01CX_1662 Zn-dependent peptidase, insulinase family; peptidase M16C associated domain-containing protein 2052631 5676564 Clos_1941 Alkaliphilus oremlandii OhILAs peptidase M16C associated domain-containing protein YP_001513475.1 2049701 R 350688 CDS YP_001513476.1 158320969 5676565 2052754..2053827 1 NC_009922.1 KEGG: ctc:CTC00796 hypothetical protein; hypothetical protein 2053827 5676565 Clos_1942 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513476.1 2052754 D 350688 CDS YP_001513477.1 158320970 5676566 complement(2053786..2055027) 1 NC_009922.1 TIGRFAM: molybdenum cofactor synthesis domain; competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cpr:CPR_0128 CinA family protein; competence damage-inducible protein A 2055027 5676566 Clos_1943 Alkaliphilus oremlandii OhILAs competence damage-inducible protein A YP_001513477.1 2053786 R 350688 CDS YP_001513478.1 158320971 5676567 complement(2055211..2057352) 1 NC_009922.1 PFAM: Peptidoglycan-binding LysM; KEGG: cel:F07G11.9 F07G11.9; peptidoglycan-binding LysM 2057352 5676567 Clos_1944 Alkaliphilus oremlandii OhILAs peptidoglycan-binding LysM YP_001513478.1 2055211 R 350688 CDS YP_001513479.1 158320972 5676568 complement(2057525..2059360) 1 NC_009922.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE2781 ABC transporter, ATP-binding/permease protein; ABC transporter 2059360 5676568 Clos_1945 Alkaliphilus oremlandii OhILAs ABC transporter YP_001513479.1 2057525 R 350688 CDS YP_001513480.1 158320973 5676569 complement(2059397..2061208) 1 NC_009922.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: tde:TDE2782 ABC transporter, ATP-binding/permease protein; ABC transporter 2061208 5676569 Clos_1946 Alkaliphilus oremlandii OhILAs ABC transporter YP_001513480.1 2059397 R 350688 CDS YP_001513481.1 158320974 5676570 complement(2061715..2062344) 1 NC_009922.1 Contains selenocysteine; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; KEGG: hma:rrnAC1491 peptide methionine sulfoxide reductase MsrA1; peptide methionine sulfoxide reductase 2062344 5676570 Clos_1947 Alkaliphilus oremlandii OhILAs peptide methionine sulfoxide reductase YP_001513481.1 2061715 R 350688 CDS YP_001513482.1 158320975 5676571 2062616..2063185 1 NC_009922.1 PFAM: Rhomboid family protein; KEGG: cth:Cthe_0259 rhomboid-like protein; rhomboid family protein 2063185 5676571 Clos_1948 Alkaliphilus oremlandii OhILAs rhomboid family protein YP_001513482.1 2062616 D 350688 CDS YP_001513483.1 158320976 5676572 complement(2063173..2065386) 1 NC_009922.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; extracellular solute-binding protein family 3; KEGG: cth:Cthe_0408 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); diguanylate cyclase/phosphodiesterase 2065386 5676572 Clos_1949 Alkaliphilus oremlandii OhILAs diguanylate cyclase/phosphodiesterase YP_001513483.1 2063173 R 350688 CDS YP_001513484.1 158320977 5677066 complement(2065601..2066788) 1 NC_009922.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: mta:Moth_1287 beta-lactamase-like; flavodoxin/nitric oxide synthase 2066788 5677066 Clos_1950 Alkaliphilus oremlandii OhILAs flavodoxin/nitric oxide synthase YP_001513484.1 2065601 R 350688 CDS YP_001513485.1 158320978 5677067 complement(2066957..2068225) 1 NC_009922.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: cno:NT01CX_0192 uracil-xanthine permease; uracil-xanthine permease 2068225 5677067 Clos_1951 Alkaliphilus oremlandii OhILAs uracil-xanthine permease YP_001513485.1 2066957 R 350688 CDS YP_001513486.1 158320979 5677068 2068582..2068749 1 NC_009922.1 KEGG: cth:Cthe_3121 hypothetical protein; hypothetical protein 2068749 5677068 Clos_1952 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513486.1 2068582 D 350688 CDS YP_001513487.1 158320980 5677069 complement(2068793..2072323) 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cbo:CBO1192 pyruvate-flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 2072323 5677069 Clos_1953 Alkaliphilus oremlandii OhILAs pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_001513487.1 2068793 R 350688 CDS YP_001513488.1 158320981 5677070 2072584..2074071 1 NC_009922.1 KEGG: ctc:CTC02358 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; threonine synthase 2074071 5677070 Clos_1954 Alkaliphilus oremlandii OhILAs threonine synthase YP_001513488.1 2072584 D 350688 CDS YP_001513489.1 158320982 5677071 2074081..2074974 1 NC_009922.1 KEGG: cbo:CBO1639 homoserine kinase; TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein; homoserine kinase 2074974 5677071 Clos_1955 Alkaliphilus oremlandii OhILAs homoserine kinase YP_001513489.1 2074081 D 350688 CDS YP_001513490.1 158320983 5677072 2074980..2075420 1 NC_009922.1 PFAM: amino acid-binding ACT domain protein; KEGG: cac:CAC1234 chorismate mutase PheB of B.subtilis ortholog; hypothetical protein 2075420 5677072 Clos_1956 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513490.1 2074980 D 350688 CDS YP_001513491.1 158320984 5677073 complement(2075475..2076155) 1 NC_009922.1 KEGG: cbo:CBO0038 hypothetical protein; hypothetical protein 2076155 5677073 Clos_1957 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513491.1 2075475 R 350688 CDS YP_001513492.1 158320985 5677074 2076303..2076800 1 NC_009922.1 KEGG: cac:CAC1317 potassium channel subunit; hypothetical protein 2076800 5677074 Clos_1958 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513492.1 2076303 D 350688 CDS YP_001513493.1 158320986 5677075 2076934..2078547 1 NC_009922.1 catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 2078547 5677075 Clos_1959 Alkaliphilus oremlandii OhILAs putative manganese-dependent inorganic pyrophosphatase YP_001513493.1 2076934 D 350688 CDS YP_001513494.1 158320987 5676374 complement(2078718..2079629) 1 NC_009922.1 PFAM: response regulator receiver; CheW domain protein; KEGG: bha:BH2262 modulation of CheA activity in response to attractants (chemotaxis protein); response regulator receiver modulated CheW protein 2079629 5676374 Clos_1960 Alkaliphilus oremlandii OhILAs response regulator receiver modulated CheW protein YP_001513494.1 2078718 R 350688 CDS YP_001513495.1 158320988 5676375 complement(2079743..2080012) 1 NC_009922.1 KEGG: cdf:CD3666 hypothetical protein; hypothetical protein 2080012 5676375 Clos_1961 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513495.1 2079743 R 350688 CDS YP_001513496.1 158320989 5676376 complement(2080022..2080234) 1 NC_009922.1 PFAM: SirA family protein; KEGG: pth:PTH_0551 predicted redox protein; SirA family protein 2080234 5676376 Clos_1962 Alkaliphilus oremlandii OhILAs SirA family protein YP_001513496.1 2080022 R 350688 CDS YP_001513497.1 158320990 5676377 complement(2080227..2081339) 1 NC_009922.1 KEGG: mta:Moth_1442 hypothetical protein; hypothetical protein 2081339 5676377 Clos_1963 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513497.1 2080227 R 350688 CDS YP_001513498.1 158320991 5676378 complement(2081630..2083882) 1 NC_009922.1 PFAM: S-layer domain protein; KEGG: tte:TTE0861 hypothetical protein; S-layer domain-containing protein 2083882 5676378 Clos_1964 Alkaliphilus oremlandii OhILAs S-layer domain-containing protein YP_001513498.1 2081630 R 350688 CDS YP_001513499.1 158320992 5676379 complement(2083961..2084752) 1 NC_009922.1 KEGG: pth:PTH_1534 hypothetical protein; hypothetical protein 2084752 5676379 Clos_1965 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513499.1 2083961 R 350688 CDS YP_001513500.1 158320993 5676380 complement(2085078..2086466) 1 NC_009922.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ctc:CTC00603 Na+ driven multidrug efflux pump (MviN domain); MATE efflux family protein 2086466 5676380 Clos_1966 Alkaliphilus oremlandii OhILAs MATE efflux family protein YP_001513500.1 2085078 R 350688 CDS YP_001513501.1 158320994 5676381 2086699..2087190 1 NC_009922.1 PFAM: protein of unknown function DUF520; KEGG: drm:Dred_1927 protein of unknown function DUF520; hypothetical protein 2087190 5676381 Clos_1967 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513501.1 2086699 D 350688 CDS YP_001513502.1 158320995 5676382 complement(2087258..2087974) 1 NC_009922.1 KEGG: ctc:CTC02044 Ser/Thr and Tyr protein phosphatase (dual specificity)#; hypothetical protein 2087974 5676382 Clos_1968 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513502.1 2087258 R 350688 CDS YP_001513503.1 158320996 5676383 complement(2088180..2090693) 1 NC_009922.1 PFAM: peptidase U32; KEGG: cdf:CD0703 protease; peptidase U32 2090693 5676383 Clos_1969 Alkaliphilus oremlandii OhILAs peptidase U32 YP_001513503.1 2088180 R 350688 CDS YP_001513504.1 158320997 5677205 complement(2090828..2091382) 1 NC_009922.1 PFAM: protein of unknown function DUF710; KEGG: cac:CAC2355 hypothetical protein; hypothetical protein 2091382 5677205 Clos_1970 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513504.1 2090828 R 350688 CDS YP_001513505.1 158320998 5677206 complement(2091531..2093927) 1 NC_009922.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2093927 pheT 5677206 pheT Alkaliphilus oremlandii OhILAs phenylalanyl-tRNA synthetase subunit beta YP_001513505.1 2091531 R 350688 CDS YP_001513506.1 158320999 5677207 complement(2093941..2094960) 1 NC_009922.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2094960 pheS 5677207 pheS Alkaliphilus oremlandii OhILAs phenylalanyl-tRNA synthetase subunit alpha YP_001513506.1 2093941 R 350688 CDS YP_001513507.1 158321000 5677208 complement(2095557..2096393) 1 NC_009922.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cth:Cthe_1222 RNA methyltransferase, TrmH family, group 3; tRNA/rRNA methyltransferase SpoU 2096393 5677208 Clos_1973 Alkaliphilus oremlandii OhILAs tRNA/rRNA methyltransferase SpoU YP_001513507.1 2095557 R 350688 CDS YP_001513508.1 158321001 5677209 complement(2096407..2097051) 1 NC_009922.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: cpf:CPF_2142 putative potassium uptake protein; TrkA domain-containing protein 2097051 5677209 Clos_1974 Alkaliphilus oremlandii OhILAs TrkA domain-containing protein YP_001513508.1 2096407 R 350688 CDS YP_001513509.1 158321002 5677210 complement(2097063..2098412) 1 NC_009922.1 KEGG: tte:TTE0196 trk-type K+ transport systems, membrane components; TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter; TrkH family potassium uptake protein 2098412 5677210 Clos_1975 Alkaliphilus oremlandii OhILAs TrkH family potassium uptake protein YP_001513509.1 2097063 R 350688 CDS YP_001513510.1 158321003 5677211 complement(2098577..2098936) 1 NC_009922.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2098936 rplT 5677211 rplT Alkaliphilus oremlandii OhILAs 50S ribosomal protein L20 YP_001513510.1 2098577 R 350688 CDS YP_001513511.1 158321004 5677212 complement(2098968..2099162) 1 NC_009922.1 PFAM: ribosomal protein L35; KEGG: swo:Swol_1091 50S ribosomal protein L35; 50S ribosomal protein L35 2099162 rpmI 5677212 rpmI Alkaliphilus oremlandii OhILAs 50S ribosomal protein L35 YP_001513511.1 2098968 R 350688 CDS YP_001513512.1 158321005 5677213 complement(2099183..2099611) 1 NC_009922.1 TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: cth:Cthe_1225 translation initiation factor IF-3; translation initiation factor IF-3 2099611 5677213 Clos_1978 Alkaliphilus oremlandii OhILAs translation initiation factor IF-3 YP_001513512.1 2099183 R 350688 CDS YP_001513513.1 158321006 5677214 2100077..2101678 1 NC_009922.1 KEGG: cdf:CD0684 putative ATP-dependent peptidase; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 2101678 5677214 Clos_1979 Alkaliphilus oremlandii OhILAs ATP-dependent metalloprotease FtsH YP_001513513.1 2100077 D 350688 CDS YP_001513514.1 158321007 5676897 complement(2101760..2103670) 1 NC_009922.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2103670 thrS 5676897 thrS Alkaliphilus oremlandii OhILAs threonyl-tRNA synthetase YP_001513514.1 2101760 R 350688 CDS YP_001513515.1 158321008 5676898 complement(2104072..2104674) 1 NC_009922.1 KEGG: cdf:CD0573 putative membrane protin; hypothetical protein 2104674 5676898 Clos_1981 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513515.1 2104072 R 350688 CDS YP_001513516.1 158321009 5676899 complement(2104799..2105710) 1 NC_009922.1 PFAM: Sporulation protein YtxC; KEGG: cth:Cthe_2071 hypothetical protein; sporulation protein YtxC 2105710 5676899 Clos_1982 Alkaliphilus oremlandii OhILAs sporulation protein YtxC YP_001513516.1 2104799 R 350688 CDS YP_001513517.1 158321010 5676900 2105966..2106223 1 NC_009922.1 PFAM: FeoA family protein; KEGG: mta:Moth_1407 FeoA; FeoA family protein 2106223 5676900 Clos_1983 Alkaliphilus oremlandii OhILAs FeoA family protein YP_001513517.1 2105966 D 350688 CDS YP_001513518.1 158321011 5676901 2106246..2108183 1 NC_009922.1 PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: ctc:CTC00451 ferrous iron transport protein B; GTP-binding protein HSR1-related 2108183 5676901 Clos_1984 Alkaliphilus oremlandii OhILAs GTP-binding protein HSR1-related YP_001513518.1 2106246 D 350688 CDS YP_001513519.1 158321012 5676902 complement(2108290..2109555) 1 NC_009922.1 PFAM: RNA-directed DNA polymerase (Reverse transcriptase); Group II intron maturase-specific domain protein; KEGG: pth:PTH_2468 retron-type reverse transcriptase; RNA-directed DNA polymerase 2109555 5676902 Clos_1985 Alkaliphilus oremlandii OhILAs RNA-directed DNA polymerase YP_001513519.1 2108290 R 350688 CDS YP_001513520.1 158321013 5676903 complement(2110602..2110883) 1 NC_009922.1 KEGG: cno:NT01CX_1675 hypothetical protein; hypothetical protein 2110883 5676903 Clos_1986 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513520.1 2110602 R 350688 CDS YP_001513521.1 158321014 5676904 complement(2111240..2112049) 1 NC_009922.1 PFAM: Integrase catalytic region; KEGG: dsy:DSY3295 hypothetical protein; integrase catalytic region 2112049 5676904 Clos_1987 Alkaliphilus oremlandii OhILAs integrase catalytic region YP_001513521.1 2111240 R 350688 CDS YP_001513522.1 158321015 5676905 complement(2112112..2112405) 1 NC_009922.1 PFAM: transposase IS3/IS911 family protein; KEGG: dsy:DSY4613 hypothetical protein; transposase IS3/IS911 family protein 2112405 5676905 Clos_1988 Alkaliphilus oremlandii OhILAs transposase IS3/IS911 family protein YP_001513522.1 2112112 R 350688 CDS YP_001513523.1 158321016 5677846 complement(2113489..2113890) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: pat:Patl_2636 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2113890 5677846 Clos_1990 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001513523.1 2113489 R 350688 CDS YP_001513524.1 158321017 5677847 complement(2114257..2114745) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: fjo:Fjoh_1285 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2114745 5677847 Clos_1991 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001513524.1 2114257 R 350688 CDS YP_001513525.1 158321018 5677848 complement(2115367..2115975) 1 NC_009922.1 KEGG: cno:NT01CX_1181 lipoprotein, putative; putative lipoprotein 2115975 5677848 Clos_1992 Alkaliphilus oremlandii OhILAs putative lipoprotein YP_001513525.1 2115367 R 350688 CDS YP_001513526.1 158321019 5677849 complement(2116341..2116895) 1 NC_009922.1 KEGG: pgi:PG0565 hypothetical protein; hypothetical protein 2116895 5677849 Clos_1993 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513526.1 2116341 R 350688 CDS YP_001513527.1 158321020 5677850 complement(2117267..2117668) 1 NC_009922.1 hypothetical protein 2117668 5677850 Clos_1994 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513527.1 2117267 R 350688 CDS YP_001513528.1 158321021 5677851 complement(2118105..2118323) 1 NC_009922.1 KEGG: cpr:CPR_0799 hypothetical protein; hypothetical protein 2118323 5677851 Clos_1995 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513528.1 2118105 R 350688 CDS YP_001513529.1 158321022 5677852 complement(2118666..2119154) 1 NC_009922.1 KEGG: cno:NT01CX_1830 hypothetical protein; hypothetical protein 2119154 5677852 Clos_1996 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513529.1 2118666 R 350688 CDS YP_001513530.1 158321023 5677853 complement(2119995..2120408) 1 NC_009922.1 PFAM: Endoribonuclease L-PSP; KEGG: cmi:CMM_0658 putative endoribonuclease L-PSP; endoribonuclease L-PSP 2120408 5677853 Clos_1997 Alkaliphilus oremlandii OhILAs endoribonuclease L-PSP YP_001513530.1 2119995 R 350688 CDS YP_001513531.1 158321024 5677854 complement(2120584..2120853) 1 NC_009922.1 KEGG: spj:MGAS2096_Spy1119 hypothetical protein; hypothetical protein 2120853 5677854 Clos_1998 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513531.1 2120584 R 350688 CDS YP_001513532.1 158321025 5677855 complement(2121292..2121837) 1 NC_009922.1 hypothetical protein 2121837 5677855 Clos_1999 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513532.1 2121292 R 350688 CDS YP_001513533.1 158321026 5678323 2122200..2122493 1 NC_009922.1 PFAM: transposase IS3/IS911 family protein; KEGG: dsy:DSY4613 hypothetical protein; transposase IS3/IS911 family protein 2122493 5678323 Clos_2000 Alkaliphilus oremlandii OhILAs transposase IS3/IS911 family protein YP_001513533.1 2122200 D 350688 CDS YP_001513534.1 158321027 5678324 2122556..2123365 1 NC_009922.1 PFAM: Integrase catalytic region; KEGG: dsy:DSY3295 hypothetical protein; integrase catalytic region 2123365 5678324 Clos_2001 Alkaliphilus oremlandii OhILAs integrase catalytic region YP_001513534.1 2122556 D 350688 CDS YP_001513535.1 158321028 5678325 complement(2124667..2124978) 1 NC_009922.1 hypothetical protein 2124978 5678325 Clos_2002 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513535.1 2124667 R 350688 CDS YP_001513536.1 158321029 5678329 complement(2125574..2126473) 1 NC_009922.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 2126473 hslO 5678329 hslO Alkaliphilus oremlandii OhILAs Hsp33-like chaperonin YP_001513536.1 2125574 R 350688 CDS YP_001513537.1 158321030 5677818 2126699..2126962 1 NC_009922.1 PFAM: YCII-related; KEGG: oih:OB2607 hypothetical protein; YCII-like protein 2126962 5677818 Clos_2004 Alkaliphilus oremlandii OhILAs YCII-like protein YP_001513537.1 2126699 D 350688 CDS YP_001513538.1 158321031 5677819 complement(2127172..2127372) 1 NC_009922.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: efa:EF1367 cold-shock domain family protein; cold-shock DNA-binding domain-containing protein 2127372 5677819 Clos_2005 Alkaliphilus oremlandii OhILAs cold-shock DNA-binding domain-containing protein YP_001513538.1 2127172 R 350688 CDS YP_001513539.1 158321032 5677820 complement(2127528..2128274) 1 NC_009922.1 PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: cdf:CD3220 putative methyltransferase; methyltransferase type 11 2128274 5677820 Clos_2006 Alkaliphilus oremlandii OhILAs methyltransferase type 11 YP_001513539.1 2127528 R 350688 CDS YP_001513540.1 158321033 5677821 complement(2128271..2128471) 1 NC_009922.1 KEGG: cpr:CPR_1870 small, acid-soluble spore protein, alpha/beta family; hypothetical protein 2128471 5677821 Clos_2007 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513540.1 2128271 R 350688 CDS YP_001513541.1 158321034 5677822 complement(2128767..2129684) 1 NC_009922.1 catalyzes the formation of glutamate from glutamine; glutaminase 2129684 5677822 Clos_2008 Alkaliphilus oremlandii OhILAs glutaminase YP_001513541.1 2128767 R 350688 CDS YP_001513542.1 158321035 5677823 complement(2129769..2131445) 1 NC_009922.1 PFAM: phosphoribulokinase/uridine kinase; SMART: AAA ATPase; KEGG: cth:Cthe_0332 phosphoribulokinase/uridine kinase; phosphoribulokinase/uridine kinase 2131445 5677823 Clos_2009 Alkaliphilus oremlandii OhILAs phosphoribulokinase/uridine kinase YP_001513542.1 2129769 R 350688 CDS YP_001513543.1 158321036 5677824 complement(2131681..2132109) 1 NC_009922.1 PFAM: CBS domain containing protein; KEGG: bha:BH2605 hypothetical protein; signal-transduction protein 2132109 5677824 Clos_2010 Alkaliphilus oremlandii OhILAs signal-transduction protein YP_001513543.1 2131681 R 350688 CDS YP_001513544.1 158321037 5677825 complement(2132245..2132811) 1 NC_009922.1 TIGRFAM: signal peptidase I; PFAM: peptidase S24 S26A and S26B; KEGG: cdf:CD0554 signal peptidase I; signal peptidase I 2132811 5677825 Clos_2011 Alkaliphilus oremlandii OhILAs signal peptidase I YP_001513544.1 2132245 R 350688 CDS YP_001513545.1 158321038 5677826 2132978..2133514 1 NC_009922.1 KEGG: sth:STH879 conserved domain protein, proline-rich; hypothetical protein 2133514 5677826 Clos_2012 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513545.1 2132978 D 350688 CDS YP_001513546.1 158321039 5677827 complement(2133515..2134222) 1 NC_009922.1 KEGG: cno:NT01CX_1222 hypothetical protein; hypothetical protein 2134222 5677827 Clos_2013 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513546.1 2133515 R 350688 CDS YP_001513547.1 158321040 5678294 complement(2134376..2135320) 1 NC_009922.1 PFAM: Abortive infection protein; KEGG: tte:TTE2577 predicted metal-dependent membrane protease; abortive infection protein 2135320 5678294 Clos_2014 Alkaliphilus oremlandii OhILAs abortive infection protein YP_001513547.1 2134376 R 350688 CDS YP_001513548.1 158321041 5678295 complement(2135467..2136006) 1 NC_009922.1 KEGG: cdf:CD3231 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase 2136006 5678295 Clos_2015 Alkaliphilus oremlandii OhILAs hypoxanthine phosphoribosyltransferase YP_001513548.1 2135467 R 350688 CDS YP_001513549.1 158321042 5678296 complement(2136370..2137038) 1 NC_009922.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 2137038 5678296 Clos_2016 Alkaliphilus oremlandii OhILAs single-stranded DNA-binding protein YP_001513549.1 2136370 R 350688 CDS YP_001513550.1 158321043 5678297 complement(2137142..2138647) 1 NC_009922.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: aae:aq_1747 UDP-MurNac-tripeptide synthetase; UDP-N-acetylmuramyl tripeptide synthetase 2138647 5678297 Clos_2017 Alkaliphilus oremlandii OhILAs UDP-N-acetylmuramyl tripeptide synthetase YP_001513550.1 2137142 R 350688 CDS YP_001513551.1 158321044 5678298 complement(2139087..2139851) 1 NC_009922.1 PFAM: polysaccharide deacetylase; KEGG: csc:Csac_2009 polysaccharide deacetylase; polysaccharide deacetylase 2139851 5678298 Clos_2018 Alkaliphilus oremlandii OhILAs polysaccharide deacetylase YP_001513551.1 2139087 R 350688 CDS YP_001513552.1 158321045 5678299 complement(2139972..2140868) 1 NC_009922.1 PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: drm:Dred_3207 substrate-binding region of ABC-type glycine betaine transport system; substrate-binding region of ABC-type glycine betaine transport system 2140868 5678299 Clos_2019 Alkaliphilus oremlandii OhILAs substrate-binding region of ABC-type glycine betaine transport system YP_001513552.1 2139972 R 350688 CDS YP_001513553.1 158321046 5678300 complement(2140936..2141775) 1 NC_009922.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lmf:LMOf2365_1036 glycine betaine/L-proline ABC transporter, permease protein; binding-protein-dependent transport system inner membrane protein 2141775 5678300 Clos_2020 Alkaliphilus oremlandii OhILAs binding-protein-dependent transport system inner membrane protein YP_001513553.1 2140936 R 350688 CDS YP_001513554.1 158321047 5678301 complement(2141747..2142961) 1 NC_009922.1 KEGG: drm:Dred_3209 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 2142961 5678301 Clos_2021 Alkaliphilus oremlandii OhILAs glycine betaine/L-proline ABC transporter ATPase YP_001513554.1 2141747 R 350688 CDS YP_001513555.1 158321048 5678302 2143270..2143803 1 NC_009922.1 KEGG: bcl:ABC1070 transcriptional regulator; transcriptional regulator 2143803 5678302 Clos_2022 Alkaliphilus oremlandii OhILAs transcriptional regulator YP_001513555.1 2143270 D 350688 CDS YP_001513556.1 158321049 5678303 2143993..2145225 1 NC_009922.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 2145225 5678303 Clos_2023 Alkaliphilus oremlandii OhILAs aspartate aminotransferase YP_001513556.1 2143993 D 350688 CDS YP_001513557.1 158321050 5675898 2145279..2146232 1 NC_009922.1 PFAM: Na+/Picotransporter; KEGG: cpf:CPF_2677 Na/Pi-cotransporter family protein/PhoU family protein; Na+/H+ antiporter 2146232 5675898 Clos_2024 Alkaliphilus oremlandii OhILAs Na+/H+ antiporter YP_001513557.1 2145279 D 350688 CDS YP_001513558.1 158321051 5675899 2146461..2146664 1 NC_009922.1 PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cdf:CD3249 small acid-soluble spore protein B; small acid-soluble spore protein alpha/beta type 2146664 5675899 Clos_2025 Alkaliphilus oremlandii OhILAs small acid-soluble spore protein alpha/beta type YP_001513558.1 2146461 D 350688 CDS YP_001513559.1 158321052 5675900 2146910..2147437 1 NC_009922.1 KEGG: cdf:CD3250 hypothetical protein; hypothetical protein 2147437 5675900 Clos_2026 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513559.1 2146910 D 350688 CDS YP_001513560.1 158321053 5675901 complement(2147745..2148683) 1 NC_009922.1 TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; KEGG: cdf:CD3251 hypothetical protein; hypothetical protein 2148683 5675901 Clos_2027 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513560.1 2147745 R 350688 CDS YP_001513561.1 158321054 5675902 complement(2148790..2150094) 1 NC_009922.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cdf:CD3253 putative folylpolyglutamate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 2150094 5675902 Clos_2028 Alkaliphilus oremlandii OhILAs bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_001513561.1 2148790 R 350688 CDS YP_001513562.1 158321055 5675903 complement(2150714..2152060) 1 NC_009922.1 KEGG: rci:RCIX2529 C-5 cytosine-specific DNA methyltransferase; TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase 2152060 5675903 Clos_2029 Alkaliphilus oremlandii OhILAs DNA-cytosine methyltransferase YP_001513562.1 2150714 R 350688 CDS YP_001513563.1 158321056 5675904 complement(2152145..2153881) 1 NC_009922.1 PFAM: NERD domain protein; KEGG: pat:Patl_4099 NERD domain-containing family protein; NERD domain-containing protein 2153881 5675904 Clos_2030 Alkaliphilus oremlandii OhILAs NERD domain-containing protein YP_001513563.1 2152145 R 350688 CDS YP_001513564.1 158321057 5675905 complement(2153881..2155716) 1 NC_009922.1 KEGG: pat:Patl_4100 hypothetical protein; hypothetical protein 2155716 5675905 Clos_2031 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513564.1 2153881 R 350688 CDS YP_001513565.1 158321058 5675906 complement(2155718..2158972) 1 NC_009922.1 PFAM: helicase domain protein; KEGG: cdf:CD3149 putative DNA helicase; helicase domain-containing protein 2158972 5675906 Clos_2032 Alkaliphilus oremlandii OhILAs helicase domain-containing protein YP_001513565.1 2155718 R 350688 CDS YP_001513566.1 158321059 5675907 complement(2158995..2161433) 1 NC_009922.1 KEGG: pat:Patl_4102 superfamily I DNA and RNA helicases-like; hypothetical protein 2161433 5675907 Clos_2033 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513566.1 2158995 R 350688 CDS YP_001513567.1 158321060 5676683 complement(2161438..2162901) 1 NC_009922.1 PFAM: Heat shock protein 70; KEGG: fnu:FN0116 chaperone protein dnaK; heat shock protein 70 2162901 5676683 Clos_2034 Alkaliphilus oremlandii OhILAs heat shock protein 70 YP_001513567.1 2161438 R 350688 CDS YP_001513568.1 158321061 5676684 complement(2162913..2164415) 1 NC_009922.1 KEGG: tva:TVAG_012450 viral A-type inclusion protein, putative; hypothetical protein 2164415 5676684 Clos_2035 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513568.1 2162913 R 350688 CDS YP_001513569.1 158321062 5676685 complement(2164429..2167482) 1 NC_009922.1 KEGG: pfa:PF11_0392 hypothetical protein; hypothetical protein 2167482 5676685 Clos_2036 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513569.1 2164429 R 350688 CDS YP_001513570.1 158321063 5676687 complement(2168289..2170943) 1 NC_009922.1 TIGRFAM: valyl-tRNA synthetase; KEGG: cdf:CD3256 valyl-tRNA synthetase; valyl-tRNA synthetase 2170943 5676687 Clos_2038 Alkaliphilus oremlandii OhILAs valyl-tRNA synthetase YP_001513570.1 2168289 R 350688 CDS YP_001513571.1 158321064 5676688 complement(2171256..2171792) 1 NC_009922.1 TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: ctc:CTC00117 phosphatidylglycerophosphate synthase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2171792 5676688 Clos_2039 Alkaliphilus oremlandii OhILAs CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001513571.1 2171256 R 350688 CDS YP_001513572.1 158321065 5676689 complement(2171887..2172204) 1 NC_009922.1 hypothetical protein 2172204 5676689 Clos_2040 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513572.1 2171887 R 350688 CDS YP_001513573.1 158321066 5676690 2172355..2173359 1 NC_009922.1 PFAM: NMT1/THI5 like domain protein; KEGG: ctc:CTC00407 ABC transporter substrate-binding protein; NMT1/THI5-like domain-containing protein 2173359 5676690 Clos_2041 Alkaliphilus oremlandii OhILAs NMT1/THI5-like domain-containing protein YP_001513573.1 2172355 D 350688 CDS YP_001513574.1 158321067 5676691 complement(2173454..2173804) 1 NC_009922.1 KEGG: bcz:BCZK2510 hypothetical protein; hypothetical protein 2173804 5676691 Clos_2042 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513574.1 2173454 R 350688 CDS YP_001513575.1 158321068 5676692 complement(2174137..2174403) 1 NC_009922.1 hypothetical protein 2174403 5676692 Clos_2043 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513575.1 2174137 R 350688 CDS YP_001513576.1 158321069 5676625 complement(2175229..2175648) 1 NC_009922.1 PFAM: NUDIX hydrolase; KEGG: btl:BALH_0560 MutT/NUDIX family protein; NUDIX hydrolase 2175648 5676625 Clos_2044 Alkaliphilus oremlandii OhILAs NUDIX hydrolase YP_001513576.1 2175229 R 350688 CDS YP_001513577.1 158321070 5676626 complement(2175711..2176190) 1 NC_009922.1 PFAM: NUDIX hydrolase; KEGG: cdf:CD0705 putative DNA repair protein; NUDIX hydrolase 2176190 5676626 Clos_2045 Alkaliphilus oremlandii OhILAs NUDIX hydrolase YP_001513577.1 2175711 R 350688 CDS YP_001513578.1 158321071 5676627 complement(2176213..2176692) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: acb:A1S_2199 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2176692 5676627 Clos_2046 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001513578.1 2176213 R 350688 CDS YP_001513579.1 158321072 5676628 complement(2177099..2177788) 1 NC_009922.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: cbo:CBO0657 Crp-family transcriptional regulator; Crp/FNR family transcriptional regulator 2177788 5676628 Clos_2047 Alkaliphilus oremlandii OhILAs Crp/FNR family transcriptional regulator YP_001513579.1 2177099 R 350688 CDS YP_001513580.1 158321073 5676629 complement(2177801..2179648) 1 NC_009922.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rci:RCIX1787 cation-transporting P-type ATPase; heavy metal translocating P-type ATPase 2179648 5676629 Clos_2048 Alkaliphilus oremlandii OhILAs heavy metal translocating P-type ATPase YP_001513580.1 2177801 R 350688 CDS YP_001513581.1 158321074 5676630 complement(2179689..2179904) 1 NC_009922.1 PFAM: Heavy metal transport/detoxification protein; KEGG: lsl:LSL_1784 hypothetical protein; heavy metal transport/detoxification protein 2179904 5676630 Clos_2049 Alkaliphilus oremlandii OhILAs heavy metal transport/detoxification protein YP_001513581.1 2179689 R 350688 CDS YP_001513582.1 158321075 5676631 complement(2180014..2181306) 1 NC_009922.1 PFAM: protein of unknown function DUF1063; KEGG: cdf:CD3232 hypothetical protein; hypothetical protein 2181306 5676631 Clos_2050 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513582.1 2180014 R 350688 CDS YP_001513583.1 158321076 5676632 complement(2181517..2183289) 1 NC_009922.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: PAS domain containing protein; AAA ATPase; KEGG: cdf:CD3233 putative sigma-54 interacting protein; PAS modulated sigma54 specific transcriptional regulator 2183289 5676632 Clos_2051 Alkaliphilus oremlandii OhILAs PAS modulated sigma54 specific transcriptional regulator YP_001513583.1 2181517 R 350688 CDS YP_001513584.1 158321077 5676633 complement(2183292..2184467) 1 NC_009922.1 PFAM: YibE/F family protein; KEGG: drm:Dred_2717 YibE/F family protein; YibE/F family protein 2184467 5676633 Clos_2052 Alkaliphilus oremlandii OhILAs YibE/F family protein YP_001513584.1 2183292 R 350688 CDS YP_001513585.1 158321078 5676634 complement(2184692..2187364) 1 NC_009922.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; calcium-translocating P-type ATPase, PMCA-type; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: ddi:DDB_0233096 P-type ATPase; ATPase P 2187364 5676634 Clos_2053 Alkaliphilus oremlandii OhILAs ATPase P YP_001513585.1 2184692 R 350688 CDS YP_001513586.1 158321079 5677325 complement(2187801..2188658) 1 NC_009922.1 TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; KEGG: bcl:ABC0856 epimerase; PhzF family phenazine biosynthesis protein 2188658 5677325 Clos_2054 Alkaliphilus oremlandii OhILAs PhzF family phenazine biosynthesis protein YP_001513586.1 2187801 R 350688 CDS YP_001513587.1 158321080 5677326 complement(2188680..2189378) 1 NC_009922.1 PFAM: Pirin domain protein; KEGG: cbo:CBO0860 pirin-family protein; pirin domain-containing protein 2189378 5677326 Clos_2055 Alkaliphilus oremlandii OhILAs pirin domain-containing protein YP_001513587.1 2188680 R 350688 CDS YP_001513588.1 158321081 5677327 complement(2189488..2189937) 1 NC_009922.1 TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: sth:STH1761 peptide methionine sulfoxide reductase; methionine-R-sulfoxide reductase 2189937 5677327 Clos_2056 Alkaliphilus oremlandii OhILAs methionine-R-sulfoxide reductase YP_001513588.1 2189488 R 350688 CDS YP_001513589.1 158321082 5677328 complement(2189958..2190731) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2190731 5677328 Clos_2057 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001513589.1 2189958 R 350688 CDS YP_001513590.1 158321083 5677329 complement(2190785..2191249) 1 NC_009922.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cac:CAC2475 possible 5-Nitroimidazole antibiotics resistance protein, NimA-family; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 2191249 5677329 Clos_2058 Alkaliphilus oremlandii OhILAs pyridoxamine 5'-phosphate oxidase-like FMN-binding protein YP_001513590.1 2190785 R 350688 CDS YP_001513591.1 158321084 5677330 complement(2191301..2192104) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bce:BC2094 acetyltransferase; N-acetyltransferase GCN5 2192104 5677330 Clos_2059 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001513591.1 2191301 R 350688 CDS YP_001513592.1 158321085 5677331 complement(2192184..2192756) 1 NC_009922.1 KEGG: tma:TM1012 hypothetical protein; hypothetical protein 2192756 5677331 Clos_2060 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513592.1 2192184 R 350688 CDS YP_001513593.1 158321086 5677332 complement(2192786..2193844) 1 NC_009922.1 KEGG: dsy:DSY0624 hypothetical protein; hypothetical protein 2193844 5677332 Clos_2061 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513593.1 2192786 R 350688 CDS YP_001513594.1 158321087 5677333 2194128..2194307 1 NC_009922.1 PFAM: small acid-soluble spore protein alpha/beta type; small acid-soluble spore protein alpha/beta type 2194307 5677333 Clos_2062 Alkaliphilus oremlandii OhILAs small acid-soluble spore protein alpha/beta type YP_001513594.1 2194128 D 350688 CDS YP_001513595.1 158321088 5677334 complement(2194419..2195102) 1 NC_009922.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: mta:Moth_1448 ribonucleoside-triphosphate reductase, anaerobic-like; anaerobic ribonucleoside-triphosphate reductase activating protein 2195102 5677334 Clos_2063 Alkaliphilus oremlandii OhILAs anaerobic ribonucleoside-triphosphate reductase activating protein YP_001513595.1 2194419 R 350688 CDS YP_001513596.1 158321089 5677507 complement(2195107..2197239) 1 NC_009922.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 2197239 5677507 Clos_2064 Alkaliphilus oremlandii OhILAs anaerobic ribonucleoside triphosphate reductase YP_001513596.1 2195107 R 350688 CDS YP_001513597.1 158321090 5677508 complement(2197466..2199025) 1 NC_009922.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: ctc:CTC00197 stage V sporulation protein B; polysaccharide biosynthesis protein 2199025 5677508 Clos_2065 Alkaliphilus oremlandii OhILAs polysaccharide biosynthesis protein YP_001513597.1 2197466 R 350688 CDS YP_001513598.1 158321091 5677509 complement(2199101..2201026) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: btl:BALH_1927 ABC transporter, ATP-binding protein; ABC transporter 2201026 5677509 Clos_2066 Alkaliphilus oremlandii OhILAs ABC transporter YP_001513598.1 2199101 R 350688 CDS YP_001513599.1 158321092 5677510 complement(2201055..2201450) 1 NC_009922.1 KEGG: cac:CAC0953 hypothetical protein; hypothetical protein 2201450 5677510 Clos_2067 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513599.1 2201055 R 350688 CDS YP_001513600.1 158321093 5677511 complement(2201462..2202286) 1 NC_009922.1 KEGG: cno:NT01CX_0654 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu racemase; glutamate racemase 2202286 5677511 Clos_2068 Alkaliphilus oremlandii OhILAs glutamate racemase YP_001513600.1 2201462 R 350688 CDS YP_001513601.1 158321094 5677512 2202570..2203148 1 NC_009922.1 hypothetical protein 2203148 5677512 Clos_2069 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513601.1 2202570 D 350688 CDS YP_001513602.1 158321095 5677513 complement(2203191..2203553) 1 NC_009922.1 KEGG: cth:Cthe_2090 hypothetical protein; hypothetical protein 2203553 5677513 Clos_2070 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513602.1 2203191 R 350688 CDS YP_001513603.1 158321096 5677514 complement(2203695..2205044) 1 NC_009922.1 TIGRFAM: Spore germination YpeB; PFAM: Propeptide PepSY amd peptidase M4; KEGG: tte:TTE2550 putative spore germination protein; spore germination YpeB 2205044 5677514 Clos_2071 Alkaliphilus oremlandii OhILAs spore germination YpeB YP_001513603.1 2203695 R 350688 CDS YP_001513604.1 158321097 5677515 complement(2205094..2205780) 1 NC_009922.1 TIGRFAM: Spore cortex-lytic enzyme SleB; PFAM: Peptidoglycan-binding domain 1 protein; cell wall hydrolase SleB; KEGG: sth:STH2958 spore cortex-lytic enzyme precursor; spore cortex-lytic enzyme SleB 2205780 5677515 Clos_2072 Alkaliphilus oremlandii OhILAs spore cortex-lytic enzyme SleB YP_001513604.1 2205094 R 350688 CDS YP_001513605.1 158321098 5677516 complement(2205930..2207264) 1 NC_009922.1 TIGRFAM: magnesium transporter; PFAM: CBS domain containing protein; MgtE integral membrane region; MgtE intracellular region; KEGG: cbo:CBO1124 Mg2+ transporter; magnesium transporter 2207264 5677516 Clos_2073 Alkaliphilus oremlandii OhILAs magnesium transporter YP_001513605.1 2205930 R 350688 CDS YP_001513606.1 158321099 5676726 complement(2207436..2208542) 1 NC_009922.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: cbo:CBO0615 probable cell cycle protein; rod shape-determining protein RodA 2208542 5676726 Clos_2074 Alkaliphilus oremlandii OhILAs rod shape-determining protein RodA YP_001513606.1 2207436 R 350688 CDS YP_001513607.1 158321100 5676727 complement(2208782..2210590) 1 NC_009922.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: cbo:CBO2811 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2210590 5676727 Clos_2075 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer YP_001513607.1 2208782 R 350688 CDS YP_001513608.1 158321101 5676728 complement(2210777..2210989) 1 NC_009922.1 PFAM: small acid-soluble spore protein alpha/beta type; KEGG: cdf:CD3249 small acid-soluble spore protein B; small acid-soluble spore protein alpha/beta type 2210989 5676728 Clos_2076 Alkaliphilus oremlandii OhILAs small acid-soluble spore protein alpha/beta type YP_001513608.1 2210777 R 350688 CDS YP_001513609.1 158321102 5676729 complement(2211164..2212324) 1 NC_009922.1 PFAM: major facilitator superfamily MFS_1; KEGG: cno:NT01CX_0803 major facilitator superfamily protein; major facilitator transporter 2212324 5676729 Clos_2077 Alkaliphilus oremlandii OhILAs major facilitator transporter YP_001513609.1 2211164 R 350688 CDS YP_001513610.1 158321103 5676730 complement(2212443..2212661) 1 NC_009922.1 hypothetical protein 2212661 5676730 Clos_2078 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513610.1 2212443 R 350688 CDS YP_001513611.1 158321104 5676731 2212932..2213579 1 NC_009922.1 KEGG: cbo:CBO1658 hypothetical protein; hypothetical protein 2213579 5676731 Clos_2079 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513611.1 2212932 D 350688 CDS YP_001513612.1 158321105 5676732 complement(2213821..2214438) 1 NC_009922.1 hypothetical protein 2214438 5676732 Clos_2080 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513612.1 2213821 R 350688 CDS YP_001513613.1 158321106 5676733 complement(2214615..2216591) 1 NC_009922.1 PFAM: protein of unknown function DUF214; KEGG: csc:Csac_0506 protein of unknown function DUF214; hypothetical protein 2216591 5676733 Clos_2081 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513613.1 2214615 R 350688 CDS YP_001513614.1 158321107 5676734 complement(2216584..2217351) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: csc:Csac_0507 ABC transporter related; ABC transporter 2217351 5676734 Clos_2082 Alkaliphilus oremlandii OhILAs ABC transporter YP_001513614.1 2216584 R 350688 CDS YP_001513615.1 158321108 5676735 complement(2217480..2218478) 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; KEGG: csc:Csac_0508 integral membrane sensor signal transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2218478 5676735 Clos_2083 Alkaliphilus oremlandii OhILAs integral membrane sensor signal transduction histidine kinase YP_001513615.1 2217480 R 350688 CDS YP_001513616.1 158321109 5678485 complement(2218480..2219151) 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: csc:Csac_0509 two component transcriptional regulator, winged helix family; two component transcriptional regulator 2219151 5678485 Clos_2084 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001513616.1 2218480 R 350688 CDS YP_001513617.1 158321110 5678486 complement(2219212..2219982) 1 NC_009922.1 KEGG: amt:Amet_1360 metal-dependent protein-like protein; metal-dependent protein-like protein 2219982 5678486 Clos_2085 Alkaliphilus oremlandii OhILAs metal-dependent protein-like protein YP_001513617.1 2219212 R 350688 CDS YP_001513618.1 158321111 5678487 2220169..2220732 1 NC_009922.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: amt:Amet_1359 hemerythrin HHE cation binding domain protein; hemerythrin HHE cation binding domain-containing protein 2220732 5678487 Clos_2086 Alkaliphilus oremlandii OhILAs hemerythrin HHE cation binding domain-containing protein YP_001513618.1 2220169 D 350688 CDS YP_001513619.1 158321112 5678488 complement(2220858..2222210) 1 NC_009922.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: cdf:CD2866 putative regulatory protease; peptidase U62 modulator of DNA gyrase 2222210 5678488 Clos_2087 Alkaliphilus oremlandii OhILAs peptidase U62 modulator of DNA gyrase YP_001513619.1 2220858 R 350688 CDS YP_001513620.1 158321113 5678489 complement(2222223..2223602) 1 NC_009922.1 PFAM: peptidase U62 modulator of DNA gyrase; KEGG: cpe:CPE0339 TldD protein; peptidase U62 modulator of DNA gyrase 2223602 5678489 Clos_2088 Alkaliphilus oremlandii OhILAs peptidase U62 modulator of DNA gyrase YP_001513620.1 2222223 R 350688 CDS YP_001513621.1 158321114 5678490 complement(2223640..2224545) 1 NC_009922.1 KEGG: amt:Amet_1351 hypothetical protein; hypothetical protein 2224545 5678490 Clos_2089 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513621.1 2223640 R 350688 CDS YP_001513622.1 158321115 5678491 2224823..2225335 1 NC_009922.1 PFAM: Ferritin Dps family protein; KEGG: amt:Amet_1346 ferritin, Dps family protein; ferritin Dps family protein 2225335 5678491 Clos_2090 Alkaliphilus oremlandii OhILAs ferritin Dps family protein YP_001513622.1 2224823 D 350688 CDS YP_001513623.1 158321116 5678492 2225624..2226823 1 NC_009922.1 PFAM: sodium/hydrogen exchanger; KEGG: cbo:CBO2772 Na(+)/H(+) antiporter; sodium/hydrogen exchanger 2226823 5678492 Clos_2091 Alkaliphilus oremlandii OhILAs sodium/hydrogen exchanger YP_001513623.1 2225624 D 350688 CDS YP_001513624.1 158321117 5678493 2226900..2227253 1 NC_009922.1 KEGG: cth:Cthe_1401 hypothetical protein; hypothetical protein 2227253 5678493 Clos_2092 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513624.1 2226900 D 350688 CDS YP_001513625.1 158321118 5678494 2227743..2228519 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0642 ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, ATPase components; ABC transporter 2228519 5678494 Clos_2093 Alkaliphilus oremlandii OhILAs ABC transporter YP_001513625.1 2227743 D 350688 CDS YP_001513626.1 158321119 5678665 2228512..2229336 1 NC_009922.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE0641 ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, permease components; binding-protein-dependent transport system inner membrane protein 2229336 5678665 Clos_2094 Alkaliphilus oremlandii OhILAs binding-protein-dependent transport system inner membrane protein YP_001513626.1 2228512 D 350688 CDS YP_001513627.1 158321120 5678666 complement(2229383..2230921) 1 NC_009922.1 PFAM: GAF domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: sbl:Sbal_3086 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2230921 5678666 Clos_2095 Alkaliphilus oremlandii OhILAs metal dependent phosphohydrolase YP_001513627.1 2229383 R 350688 CDS YP_001513628.1 158321121 5678667 complement(2230936..2231337) 1 NC_009922.1 KEGG: cth:Cthe_0077 hypothetical protein; hypothetical protein 2231337 5678667 Clos_2096 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513628.1 2230936 R 350688 CDS YP_001513629.1 158321122 5678668 complement(2231364..2231792) 1 NC_009922.1 KEGG: cpr:CPR_0432 general stress protein, putative; general stress protein 2231792 5678668 Clos_2097 Alkaliphilus oremlandii OhILAs general stress protein YP_001513629.1 2231364 R 350688 CDS YP_001513630.1 158321123 5678669 complement(2231938..2233887) 1 NC_009922.1 PFAM: glutamine synthetase catalytic region; KEGG: cdf:CD1343 glutamine synthetase; glutamine synthetase 2233887 5678669 Clos_2098 Alkaliphilus oremlandii OhILAs glutamine synthetase YP_001513630.1 2231938 R 350688 CDS YP_001513631.1 158321124 5678670 complement(2233946..2235598) 1 NC_009922.1 PFAM: histidine kinase HAMP region domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: rrs:RoseRS_0338 response regulator receiver modulated metal dependent phosphohydrolase; metal dependent phosphohydrolase 2235598 5678670 Clos_2099 Alkaliphilus oremlandii OhILAs metal dependent phosphohydrolase YP_001513631.1 2233946 R 350688 CDS YP_001513632.1 158321125 5678671 complement(2235678..2236889) 1 NC_009922.1 PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sat:SYN_00230 response regulator receiver domain and a sigma factor phosphatase domain; response regulator receiver modulated serine phosphatase 2236889 5678671 Clos_2100 Alkaliphilus oremlandii OhILAs response regulator receiver modulated serine phosphatase YP_001513632.1 2235678 R 350688 CDS YP_001513633.1 158321126 5678672 complement(2237123..2237473) 1 NC_009922.1 PFAM: FMN-binding domain protein; KEGG: dsy:DSY4227 hypothetical protein; FMN-binding domain-containing protein 2237473 5678672 Clos_2101 Alkaliphilus oremlandii OhILAs FMN-binding domain-containing protein YP_001513633.1 2237123 R 350688 CDS YP_001513634.1 158321127 5678673 complement(2237680..2238525) 1 NC_009922.1 PFAM: FMN-binding domain protein; KEGG: aor:AO090011000451 predicted protein Pfam: Collagen PROSITE: GLN_RICH GLU_RICH GLY_RICH LYS_RICH; FMN-binding domain-containing protein 2238525 5678673 Clos_2102 Alkaliphilus oremlandii OhILAs FMN-binding domain-containing protein YP_001513634.1 2237680 R 350688 CDS YP_001513635.1 158321128 5678674 complement(2238689..2240230) 1 NC_009922.1 PFAM: FMN-binding domain protein; KEGG: efa:EF3256 pheromone cAD1 precursor lipoprotein; FMN-binding domain-containing protein 2240230 5678674 Clos_2103 Alkaliphilus oremlandii OhILAs FMN-binding domain-containing protein YP_001513635.1 2238689 R 350688 CDS YP_001513636.1 158321129 5677084 2240526..2241575 1 NC_009922.1 PFAM: ApbE family lipoprotein; KEGG: cpf:CPF_2491 ApbE family protein; ApbE family lipoprotein 2241575 5677084 Clos_2104 Alkaliphilus oremlandii OhILAs ApbE family lipoprotein YP_001513636.1 2240526 D 350688 CDS YP_001513637.1 158321130 5677085 complement(2241706..2242431) 1 NC_009922.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB (PSPase-like); HAD-superfamily subfamily IB hydrolase, TIGR01490; KEGG: cdf:CD0309 putative phosphoserine phosphatase; HAD family hydrolase 2242431 5677085 Clos_2105 Alkaliphilus oremlandii OhILAs HAD family hydrolase YP_001513637.1 2241706 R 350688 CDS YP_001513638.1 158321131 5677086 complement(2242603..2245251) 1 NC_009922.1 catalyze the formation of cyanophycin which may act to store excess nitrogen; cyanophycin synthetase 2245251 5677086 Clos_2106 Alkaliphilus oremlandii OhILAs cyanophycin synthetase YP_001513638.1 2242603 R 350688 CDS YP_001513639.1 158321132 5677087 complement(2245278..2246114) 1 NC_009922.1 TIGRFAM: cyanophycinase; PFAM: peptidase S51 dipeptidase E; KEGG: swo:Swol_1351 cyanophycinase; cyanophycinase 2246114 5677087 Clos_2107 Alkaliphilus oremlandii OhILAs cyanophycinase YP_001513639.1 2245278 R 350688 CDS YP_001513640.1 158321133 5677088 complement(2246371..2247249) 1 NC_009922.1 PFAM: polysaccharide deacetylase; KEGG: tte:TTE0866 predicted xylanase/chitin deacetylase; polysaccharide deacetylase 2247249 5677088 Clos_2108 Alkaliphilus oremlandii OhILAs polysaccharide deacetylase YP_001513640.1 2246371 R 350688 CDS YP_001513641.1 158321134 5677089 complement(2247468..2249093) 1 NC_009922.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: cdf:CD3286 putative sodium-dependent phosphate transporter; Na/Pi-cotransporter II-like protein 2249093 5677089 Clos_2109 Alkaliphilus oremlandii OhILAs Na/Pi-cotransporter II-like protein YP_001513641.1 2247468 R 350688 CDS YP_001513642.1 158321135 5677090 2249478..2249708 1 NC_009922.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: cdf:CD1062 acyl carrier protein; acyl carrier protein 2249708 5677090 Clos_2110 Alkaliphilus oremlandii OhILAs acyl carrier protein YP_001513642.1 2249478 D 350688 CDS YP_001513643.1 158321136 5677091 2249845..2250192 1 NC_009922.1 KEGG: mmu:674885 hypothetical protein LOC674885; hypothetical protein 2250192 5677091 Clos_2111 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513643.1 2249845 D 350688 CDS YP_001513644.1 158321137 5677092 complement(2250263..2250607) 1 NC_009922.1 PFAM: protein of unknown function DUF322; KEGG: cbo:CBO1887 hypothetical protein; hypothetical protein 2250607 5677092 Clos_2112 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513644.1 2250263 R 350688 CDS YP_001513645.1 158321138 5677093 complement(2250641..2251249) 1 NC_009922.1 KEGG: mta:Moth_2174 molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A 2251249 5677093 Clos_2113 Alkaliphilus oremlandii OhILAs molybdopterin-guanine dinucleotide biosynthesis protein A YP_001513645.1 2250641 R 350688 CDS YP_001513646.1 158321139 5676393 complement(2251289..2252161) 1 NC_009922.1 PFAM: RNA binding S1 domain protein; KEGG: cno:NT01CX_0180 S1 RNA binding domain; RNA-binding S1 domain-containing protein 2252161 5676393 Clos_2114 Alkaliphilus oremlandii OhILAs RNA-binding S1 domain-containing protein YP_001513646.1 2251289 R 350688 CDS YP_001513647.1 158321140 5676394 complement(2252210..2252530) 1 NC_009922.1 hypothetical protein 2252530 5676394 Clos_2115 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513647.1 2252210 R 350688 CDS YP_001513648.1 158321141 5676395 complement(2252556..2252978) 1 NC_009922.1 PFAM: Domain of unknown function DUF1893; KEGG: bfr:BF4297 putative TonB-dependent outer membrane receptor; hypothetical protein 2252978 5676395 Clos_2116 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513648.1 2252556 R 350688 CDS YP_001513649.1 158321142 5676396 complement(2253146..2253892) 1 NC_009922.1 PFAM: membrane-bound metal-dependent hydrolase; KEGG: cdf:CD1288 putative membrane-bound metal-dependent hydrolase; membrane-bound metal-dependent hydrolase 2253892 5676396 Clos_2117 Alkaliphilus oremlandii OhILAs membrane-bound metal-dependent hydrolase YP_001513649.1 2253146 R 350688 CDS YP_001513650.1 158321143 5676397 2254030..2254857 1 NC_009922.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: csc:Csac_1297 DegV family protein; degV family protein 2254857 5676397 Clos_2118 Alkaliphilus oremlandii OhILAs degV family protein YP_001513650.1 2254030 D 350688 CDS YP_001513651.1 158321144 5676398 2254892..2255257 1 NC_009922.1 hypothetical protein 2255257 5676398 Clos_2119 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513651.1 2254892 D 350688 CDS YP_001513652.1 158321145 5676399 complement(2255369..2256004) 1 NC_009922.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 2256004 trmB 5676399 trmB Alkaliphilus oremlandii OhILAs tRNA (guanine-N(7)-)-methyltransferase YP_001513652.1 2255369 R 350688 CDS YP_001513653.1 158321146 5676400 complement(2256064..2256732) 1 NC_009922.1 PFAM: protein of unknown function DUF881; KEGG: tte:TTE0278 hypothetical protein; hypothetical protein 2256732 5676400 Clos_2121 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513653.1 2256064 R 350688 CDS YP_001513654.1 158321147 5676401 2257035..2257640 1 NC_009922.1 PFAM: CBS domain containing protein; amino acid-binding ACT domain protein; KEGG: cpr:CPR_2131 CBS domain protein; hypothetical protein 2257640 5676401 Clos_2122 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513654.1 2257035 D 350688 CDS YP_001513655.1 158321148 5676402 complement(2257735..2258730) 1 NC_009922.1 KEGG: cdf:CD2610 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase 2258730 5676402 Clos_2123 Alkaliphilus oremlandii OhILAs tryptophanyl-tRNA synthetase YP_001513655.1 2257735 R 350688 CDS YP_001513656.1 158321149 5676635 2259238..2260962 1 NC_009922.1 PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: bcz:BCZK3533 pyruvate ferredoxin oxidoreductase, alpha subunit; pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein 2260962 5676635 Clos_2124 Alkaliphilus oremlandii OhILAs pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein YP_001513656.1 2259238 D 350688 CDS YP_001513657.1 158321150 5676636 2260962..2261825 1 NC_009922.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; 2-oxoglutarate ferredoxin oxidoreductase subunit beta 2261825 5676636 Clos_2125 Alkaliphilus oremlandii OhILAs 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_001513657.1 2260962 D 350688 CDS YP_001513658.1 158321151 5676637 complement(2262027..2262215) 1 NC_009922.1 hypothetical protein 2262215 5676637 Clos_2126 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513658.1 2262027 R 350688 CDS YP_001513659.1 158321152 5676638 complement(2262337..2264007) 1 NC_009922.1 PFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: dsy:DSY0205 hypothetical protein; formate--tetrahydrofolate ligase 2264007 5676638 Clos_2127 Alkaliphilus oremlandii OhILAs formate--tetrahydrofolate ligase YP_001513659.1 2262337 R 350688 CDS YP_001513660.1 158321153 5676639 2264349..2266160 1 NC_009922.1 PFAM: chemotaxis sensory transducer; Heme NO binding domain protein; KEGG: tte:TTE0680 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 2266160 5676639 Clos_2128 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer YP_001513660.1 2264349 D 350688 CDS YP_001513661.1 158321154 5676640 complement(2266281..2266511) 1 NC_009922.1 PFAM: glutaredoxin; KEGG: cth:Cthe_0235 glutaredoxin-like protein, YruB-family; Contains selenocysteine; glutaredoxin 2266511 5676640 Clos_2129 Alkaliphilus oremlandii OhILAs glutaredoxin YP_001513661.1 2266281 R 350688 CDS YP_001513662.1 158321155 5676641 complement(2266634..2266840) 1 NC_009922.1 hypothetical protein 2266840 5676641 Clos_2130 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513662.1 2266634 R 350688 CDS YP_001513663.1 158321156 5676642 2267121..2267306 1 NC_009922.1 KEGG: cno:NT01CX_0906 hypothetical protein; hypothetical protein 2267306 5676642 Clos_2131 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513663.1 2267121 D 350688 CDS YP_001513664.1 158321157 5676643 complement(2267355..2268044) 1 NC_009922.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: tte:TTE2773 cAMP-binding domains - Catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases; Crp/FNR family transcriptional regulator 2268044 5676643 Clos_2132 Alkaliphilus oremlandii OhILAs Crp/FNR family transcriptional regulator YP_001513664.1 2267355 R 350688 CDS YP_001513665.1 158321158 5676644 2268296..2268697 1 NC_009922.1 hypothetical protein 2268697 5676644 Clos_2133 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513665.1 2268296 D 350688 CDS YP_001513666.1 158321159 5676984 complement(2268728..2269540) 1 NC_009922.1 PFAM: ABC-3 protein; KEGG: cth:Cthe_0549 ABC-3; ABC-3 protein 2269540 5676984 Clos_2134 Alkaliphilus oremlandii OhILAs ABC-3 protein YP_001513666.1 2268728 R 350688 CDS YP_001513667.1 158321160 5676985 complement(2269611..2270357) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: btl:BALH_3874 cation ABC transporter, ATP-binding protein; ABC transporter 2270357 5676985 Clos_2135 Alkaliphilus oremlandii OhILAs ABC transporter YP_001513667.1 2269611 R 350688 CDS YP_001513668.1 158321161 5676986 complement(2270358..2271356) 1 NC_009922.1 PFAM: periplasmic solute binding protein; KEGG: dsy:DSY0103 hypothetical protein; periplasmic solute binding protein 2271356 5676986 Clos_2136 Alkaliphilus oremlandii OhILAs periplasmic solute binding protein YP_001513668.1 2270358 R 350688 CDS YP_001513669.1 158321162 5676987 complement(2271515..2272240) 1 NC_009922.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: chy:CHY_0863 sec-independent protein translocase protein TatC; Sec-independent protein translocase subunit TatC 2272240 5676987 Clos_2137 Alkaliphilus oremlandii OhILAs Sec-independent protein translocase subunit TatC YP_001513669.1 2271515 R 350688 CDS YP_001513670.1 158321163 5676988 complement(2272249..2273271) 1 NC_009922.1 PFAM: molybdopterin binding domain; KEGG: chy:CHY_0621 molybdopterin-binding domain protein; molybdopterin binding domain-containing protein 2273271 5676988 Clos_2138 Alkaliphilus oremlandii OhILAs molybdopterin binding domain-containing protein YP_001513670.1 2272249 R 350688 CDS YP_001513671.1 158321164 5676989 complement(2273318..2274406) 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sth:STH228 putative polyferredoxin; 4Fe-4S ferredoxin 2274406 5676989 Clos_2139 Alkaliphilus oremlandii OhILAs 4Fe-4S ferredoxin YP_001513671.1 2273318 R 350688 CDS YP_001513672.1 158321165 5676990 complement(2274648..2276750) 1 NC_009922.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: ecj:JW5272 predicted oxidoreductase; putative oxidoreductase 2276750 5676990 Clos_2140 Alkaliphilus oremlandii OhILAs putative oxidoreductase YP_001513672.1 2274648 R 350688 CDS YP_001513673.1 158321166 5676991 complement(2276824..2277510) 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_1458 putative oxidoreductase, Fe-S subunit; hypothetical protein 2277510 5676991 Clos_2141 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513673.1 2276824 R 350688 CDS YP_001513674.1 158321167 5676992 2277921..2278991 1 NC_009922.1 PFAM: protein of unknown function DUF182; KEGG: ctc:CTC01880 alcohol dehydrogenase [cytochrome c-553], gamma chain-like protein; hypothetical protein 2278991 5676992 Clos_2142 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513674.1 2277921 D 350688 CDS YP_001513675.1 158321168 5676993 complement(2279139..2281253) 1 NC_009922.1 PFAM: aldehyde ferredoxin oxidoreductase; Aldehyde ferredoxin oxidoreductase; KEGG: ecj:JW5272 predicted oxidoreductase; putative oxidoreductase 2281253 5676993 Clos_2143 Alkaliphilus oremlandii OhILAs putative oxidoreductase YP_001513675.1 2279139 R 350688 CDS YP_001513676.1 158321169 5675957 complement(2281343..2282005) 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: sbo:SBO_1458 putative oxidoreductase, Fe-S subunit; hypothetical protein 2282005 5675957 Clos_2144 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513676.1 2281343 R 350688 CDS YP_001513677.1 158321170 5675958 complement(2282569..2283222) 1 NC_009922.1 KEGG: ecs:ECs2379 hypothetical protein; hypothetical protein 2283222 5675958 Clos_2145 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513677.1 2282569 R 350688 CDS YP_001513678.1 158321171 5675959 complement(2283345..2283560) 1 NC_009922.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 2283560 tatA 5675959 tatA Alkaliphilus oremlandii OhILAs twin arginine translocase protein A YP_001513678.1 2283345 R 350688 CDS YP_001513679.1 158321172 5675960 2283946..2285349 1 NC_009922.1 TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: cbo:CBO0700 dihydrolipoyl dehydrogenase (E3 component of pyruvate complex); dihydrolipoamide dehydrogenase 2285349 5675960 Clos_2147 Alkaliphilus oremlandii OhILAs dihydrolipoamide dehydrogenase YP_001513679.1 2283946 D 350688 CDS YP_001513680.1 158321173 5675961 complement(2285469..2286242) 1 NC_009922.1 TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cdf:CD1750 putative (R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit; putative CoA-substrate-specific enzyme activase 2286242 5675961 Clos_2148 Alkaliphilus oremlandii OhILAs putative CoA-substrate-specific enzyme activase YP_001513680.1 2285469 R 350688 CDS YP_001513681.1 158321174 5675962 complement(2286265..2287425) 1 NC_009922.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; KEGG: drm:Dred_1278 2-hydroxyglutaryl-CoA dehydratase, D-component; 2-hydroxyglutaryl-CoA dehydratase subunit D 2287425 5675962 Clos_2149 Alkaliphilus oremlandii OhILAs 2-hydroxyglutaryl-CoA dehydratase subunit D YP_001513681.1 2286265 R 350688 CDS YP_001513682.1 158321175 5675963 complement(2287600..2288583) 1 NC_009922.1 TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cth:Cthe_0354 putative CoA-substrate-specific enzyme activase; putative CoA-substrate-specific enzyme activase 2288583 5675963 Clos_2150 Alkaliphilus oremlandii OhILAs putative CoA-substrate-specific enzyme activase YP_001513682.1 2287600 R 350688 CDS YP_001513683.1 158321176 5675964 complement(2288558..2289667) 1 NC_009922.1 KEGG: cth:Cthe_0353 hypothetical protein; hypothetical protein 2289667 5675964 Clos_2151 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513683.1 2288558 R 350688 CDS YP_001513684.1 158321177 5675965 complement(2289639..2290619) 1 NC_009922.1 KEGG: cth:Cthe_0352 hypothetical protein; hypothetical protein 2290619 5675965 Clos_2152 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513684.1 2289639 R 350688 CDS YP_001513685.1 158321178 5675966 complement(2290682..2292076) 1 NC_009922.1 PFAM: phospholipase D/Transphosphatidylase; KEGG: bcz:BCZK1088 cardiolipin synthetase; phospholipase D/transphosphatidylase 2292076 5675966 Clos_2153 Alkaliphilus oremlandii OhILAs phospholipase D/transphosphatidylase YP_001513685.1 2290682 R 350688 CDS YP_001513686.1 158321179 5676867 complement(2292351..2293904) 1 NC_009922.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: gme:Gmet_1298 diguanylate cyclase (GGDEF domain); GAF sensor-containing diguanylate cyclase 2293904 5676867 Clos_2154 Alkaliphilus oremlandii OhILAs GAF sensor-containing diguanylate cyclase YP_001513686.1 2292351 R 350688 CDS YP_001513687.1 158321180 5676868 complement(2293901..2296051) 1 NC_009922.1 KEGG: cac:CAC3567 topoisomerase B; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein; DNA topoisomerase III 2296051 5676868 Clos_2155 Alkaliphilus oremlandii OhILAs DNA topoisomerase III YP_001513687.1 2293901 R 350688 CDS YP_001513688.1 158321181 5676869 complement(2296268..2297782) 1 NC_009922.1 PFAM: TPR repeat-containing protein; ADP-ribosylation/Crystallin J1; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rno:362600 ADP-ribosylhydrolase like 2 (predicted); ADP-ribosylation/crystallin J1 2297782 5676869 Clos_2156 Alkaliphilus oremlandii OhILAs ADP-ribosylation/crystallin J1 YP_001513688.1 2296268 R 350688 CDS YP_001513689.1 158321182 5676870 2297957..2299276 1 NC_009922.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: cdf:CD3253 putative folylpolyglutamate synthase; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase 2299276 5676870 Clos_2157 Alkaliphilus oremlandii OhILAs bifunctional folylpolyglutamate synthase/ dihydrofolate synthase YP_001513689.1 2297957 D 350688 CDS YP_001513690.1 158321183 5676871 complement(2299357..2300340) 1 NC_009922.1 KEGG: bcl:ABC1239 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2300340 5676871 Clos_2158 Alkaliphilus oremlandii OhILAs oligopeptide/dipeptide ABC transporter ATPase YP_001513690.1 2299357 R 350688 CDS YP_001513691.1 158321184 5676872 complement(2300327..2301307) 1 NC_009922.1 KEGG: dsy:DSY0505 hypothetical protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 2301307 5676872 Clos_2159 Alkaliphilus oremlandii OhILAs oligopeptide/dipeptide ABC transporter ATPase YP_001513691.1 2300327 R 350688 CDS YP_001513692.1 158321185 5676873 complement(2301329..2302279) 1 NC_009922.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi01233 oligopeptide ABC transporter (permease) (initiation of sporulation, competence development); RBL00613; binding-protein-dependent transport system inner membrane protein 2302279 5676873 Clos_2160 Alkaliphilus oremlandii OhILAs binding-protein-dependent transport system inner membrane protein YP_001513692.1 2301329 R 350688 CDS YP_001513693.1 158321186 5676874 complement(2302300..2304693) 1 NC_009922.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sth:STH1955 ABC transporter permease protein; binding-protein-dependent transport system inner membrane protein 2304693 5676874 Clos_2161 Alkaliphilus oremlandii OhILAs binding-protein-dependent transport system inner membrane protein YP_001513693.1 2302300 R 350688 CDS YP_001513694.1 158321187 5676875 complement(2304919..2307183) 1 NC_009922.1 TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: cno:NT01CX_1199 cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase 2307183 5676875 Clos_2162 Alkaliphilus oremlandii OhILAs heavy metal translocating P-type ATPase YP_001513694.1 2304919 R 350688 CDS YP_001513695.1 158321188 5676876 complement(2307198..2307566) 1 NC_009922.1 PFAM: regulatory protein ArsR; KEGG: cth:Cthe_0245 transcriptional regulator, ArsR family; ArsR family transcriptional regulator 2307566 5676876 Clos_2163 Alkaliphilus oremlandii OhILAs ArsR family transcriptional regulator YP_001513695.1 2307198 R 350688 CDS YP_001513696.1 158321189 5677291 complement(2307796..2308314) 1 NC_009922.1 hypothetical protein 2308314 5677291 Clos_2164 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513696.1 2307796 R 350688 CDS YP_001513697.1 158321190 5677292 complement(2308386..2309810) 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE2473 sensory transduction histidine kinase; integral membrane sensor signal transduction histidine kinase 2309810 5677292 Clos_2165 Alkaliphilus oremlandii OhILAs integral membrane sensor signal transduction histidine kinase YP_001513697.1 2308386 R 350688 CDS YP_001513698.1 158321191 5677293 complement(2309807..2310508) 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE2474 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; two component transcriptional regulator 2310508 5677293 Clos_2166 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001513698.1 2309807 R 350688 CDS YP_001513699.1 158321192 5677294 complement(2310652..2311257) 1 NC_009922.1 KEGG: cth:Cthe_0057 hypothetical protein; hypothetical protein 2311257 5677294 Clos_2167 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513699.1 2310652 R 350688 CDS YP_001513700.1 158321193 5677295 2311446..2311604 1 NC_009922.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: pvi:Cvib_1621 rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein 2311604 5677295 Clos_2168 Alkaliphilus oremlandii OhILAs rubredoxin-type Fe(Cys)4 protein YP_001513700.1 2311446 D 350688 CDS YP_001513701.1 158321194 5677296 2311778..2312677 1 NC_009922.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: tte:TTE0639 permeases of the drug/metabolite transporter (DMT) superfamily; hypothetical protein 2312677 5677296 Clos_2169 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513701.1 2311778 D 350688 CDS YP_001513702.1 158321195 5677297 complement(2312678..2313304) 1 NC_009922.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 2313304 engB 5677297 engB Alkaliphilus oremlandii OhILAs ribosome biogenesis GTP-binding protein YsxC YP_001513702.1 2312678 R 350688 CDS YP_001513703.1 158321196 5677298 complement(2313305..2315644) 1 NC_009922.1 KEGG: cth:Cthe_0082 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent protease La 2315644 5677298 Clos_2171 Alkaliphilus oremlandii OhILAs ATP-dependent protease La YP_001513703.1 2313305 R 350688 CDS YP_001513704.1 158321197 5677299 complement(2316165..2317880) 1 NC_009922.1 KEGG: cth:Cthe_2742 endopeptidase La; TIGRFAM: Sporulation protease LonB; PFAM: magnesium chelatase ChlI subunit; AAA ATPase central domain protein; peptidase S16 lon domain protein; SMART: AAA ATPase; sporulation protease LonB 2317880 5677299 Clos_2172 Alkaliphilus oremlandii OhILAs sporulation protease LonB YP_001513704.1 2316165 R 350688 CDS YP_001513705.1 158321198 5677300 complement(2318075..2319355) 1 NC_009922.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2319355 clpX 5677300 clpX Alkaliphilus oremlandii OhILAs ATP-dependent protease ATP-binding subunit ClpX YP_001513705.1 2318075 R 350688 CDS YP_001513706.1 158321199 5677363 complement(2319380..2319967) 1 NC_009922.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2319967 clpP 5677363 clpP Alkaliphilus oremlandii OhILAs ATP-dependent Clp protease proteolytic subunit YP_001513706.1 2319380 R 350688 CDS YP_001513707.1 158321200 5677364 complement(2320007..2321293) 1 NC_009922.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2321293 tig 5677364 tig Alkaliphilus oremlandii OhILAs trigger factor YP_001513707.1 2320007 R 350688 CDS YP_001513708.1 158321201 5677365 complement(2321578..2321778) 1 NC_009922.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: cdf:CD1355 putative cold shock protein; cold-shock DNA-binding domain-containing protein 2321778 5677365 Clos_2176 Alkaliphilus oremlandii OhILAs cold-shock DNA-binding domain-containing protein YP_001513708.1 2321578 R 350688 CDS YP_001513709.1 158321202 5677366 complement(2321982..2322143) 1 NC_009922.1 PFAM: protein of unknown function DUF1540; KEGG: chy:CHY_1044 hypothetical protein; hypothetical protein 2322143 5677366 Clos_2177 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513709.1 2321982 R 350688 CDS YP_001513710.1 158321203 5677367 complement(2322226..2322927) 1 NC_009922.1 PFAM: cyclic nucleotide-binding; regulatory protein Crp; KEGG: cbo:CBO0657 Crp-family transcriptional regulator; Crp/FNR family transcriptional regulator 2322927 5677367 Clos_2178 Alkaliphilus oremlandii OhILAs Crp/FNR family transcriptional regulator YP_001513710.1 2322226 R 350688 CDS YP_001513711.1 158321204 5677368 complement(2323083..2324303) 1 NC_009922.1 PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: cbo:CBO0658 anaerobic nitric oxide reductase flavorubredoxin; beta-lactamase domain-containing protein 2324303 5677368 Clos_2179 Alkaliphilus oremlandii OhILAs beta-lactamase domain-containing protein YP_001513711.1 2323083 R 350688 CDS YP_001513712.1 158321205 5677369 complement(2324445..2324909) 1 NC_009922.1 KEGG: cac:CAC0275 hypothetical protein; hypothetical protein 2324909 5677369 Clos_2180 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513712.1 2324445 R 350688 CDS YP_001513713.1 158321206 5677370 complement(2325163..2326104) 1 NC_009922.1 catalyzes the reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 2326104 5677370 Clos_2181 Alkaliphilus oremlandii OhILAs carbamate kinase YP_001513713.1 2325163 R 350688 CDS YP_001513714.1 158321207 5677371 complement(2326578..2327759) 1 NC_009922.1 hypothetical protein 2327759 5677371 Clos_2182 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513714.1 2326578 R 350688 CDS YP_001513715.1 158321208 5677372 complement(2327746..2328276) 1 NC_009922.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ctc:CTC00665 RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 factor 2328276 5677372 Clos_2183 Alkaliphilus oremlandii OhILAs ECF subfamily RNA polymerase sigma-24 factor YP_001513715.1 2327746 R 350688 CDS YP_001513716.1 158321209 5675967 complement(2328496..2328960) 1 NC_009922.1 KEGG: cac:CAC0275 hypothetical protein; hypothetical protein 2328960 5675967 Clos_2184 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513716.1 2328496 R 350688 CDS YP_001513717.1 158321210 5675968 complement(2329022..2329450) 1 NC_009922.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: cbo:CBO1775 prolyl-tRNA binding protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 2329450 5675968 Clos_2185 Alkaliphilus oremlandii OhILAs YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_001513717.1 2329022 R 350688 CDS YP_001513718.1 158321211 5675969 complement(2329678..2330865) 1 NC_009922.1 PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; KEGG: ctc:CTC02355 homoserine dehydrogenase; homoserine dehydrogenase 2330865 5675969 Clos_2186 Alkaliphilus oremlandii OhILAs homoserine dehydrogenase YP_001513718.1 2329678 R 350688 CDS YP_001513719.1 158321212 5675971 2331610..2332605 1 NC_009922.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 2332605 pyrB 5675971 pyrB Alkaliphilus oremlandii OhILAs aspartate carbamoyltransferase catalytic subunit YP_001513719.1 2331610 D 350688 CDS YP_001513720.1 158321213 5675972 complement(2332608..2333318) 1 NC_009922.1 PFAM: protein of unknown function DUF45; KEGG: bcz:BCZK0309 conserved hypothetical protein; possible zinc metalloprotease; hypothetical protein 2333318 5675972 Clos_2189 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513720.1 2332608 R 350688 CDS YP_001513721.1 158321214 5675973 complement(2333497..2334078) 1 NC_009922.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 2334078 pyrE 5675973 pyrE Alkaliphilus oremlandii OhILAs orotate phosphoribosyltransferase YP_001513721.1 2333497 R 350688 CDS YP_001513722.1 158321215 5675974 complement(2334091..2334999) 1 NC_009922.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 2334999 5675974 Clos_2191 Alkaliphilus oremlandii OhILAs dihydroorotate dehydrogenase 1B YP_001513722.1 2334091 R 350688 CDS YP_001513723.1 158321216 5675975 complement(2334992..2335762) 1 NC_009922.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: tte:TTE1531 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases; oxidoreductase FAD/NAD(P)-binding subunit 2335762 5675975 Clos_2192 Alkaliphilus oremlandii OhILAs oxidoreductase FAD/NAD(P)-binding subunit YP_001513723.1 2334992 R 350688 CDS YP_001513724.1 158321217 5675976 complement(2335768..2336694) 1 NC_009922.1 TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; KEGG: cth:Cthe_0951 orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 2336694 5675976 Clos_2193 Alkaliphilus oremlandii OhILAs orotidine 5'-phosphate decarboxylase YP_001513724.1 2335768 R 350688 CDS YP_001513725.1 158321218 5677875 complement(2336715..2338001) 1 NC_009922.1 KEGG: cth:Cthe_0952 dihydroorotase, multifunctional complex type; TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; dihydroorotase, multifunctional complex type 2338001 5677875 Clos_2194 Alkaliphilus oremlandii OhILAs dihydroorotase, multifunctional complex type YP_001513725.1 2336715 R 350688 CDS YP_001513726.1 158321219 5677876 2338657..2339232 1 NC_009922.1 PFAM: protein of unknown function DUF218; KEGG: tte:TTE2177 hypothetical protein; hypothetical protein 2339232 5677876 Clos_2195 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513726.1 2338657 D 350688 CDS YP_001513727.1 158321220 5677877 complement(2339375..2340073) 1 NC_009922.1 PFAM: protein of unknown function DUF421; KEGG: mta:Moth_0220 protein of unknown function DUF421; hypothetical protein 2340073 5677877 Clos_2196 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513727.1 2339375 R 350688 CDS YP_001513728.1 158321221 5677878 complement(2340440..2343538) 1 NC_009922.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin); isoleucyl-tRNA synthetase 2343538 ileS 5677878 ileS Alkaliphilus oremlandii OhILAs isoleucyl-tRNA synthetase YP_001513728.1 2340440 R 350688 CDS YP_001513729.1 158321222 5677879 complement(2344275..2348561) 1 NC_009922.1 TIGRFAM: putative CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: cbo:CBO3170 activator of 2-hydroxyacyl-CoA dehydratase; putative CoA-substrate-specific enzyme activase 2348561 5677879 Clos_2198 Alkaliphilus oremlandii OhILAs putative CoA-substrate-specific enzyme activase YP_001513729.1 2344275 R 350688 CDS YP_001513730.1 158321223 5677880 complement(2349181..2350713) 1 NC_009922.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dsy:DSY0555 hypothetical protein; diguanylate cyclase 2350713 5677880 Clos_2199 Alkaliphilus oremlandii OhILAs diguanylate cyclase YP_001513730.1 2349181 R 350688 CDS YP_001513731.1 158321224 5677881 complement(2350930..2352165) 1 NC_009922.1 PFAM: protein of unknown function DUF438; Hemerythrin HHE cation binding domain protein; KEGG: cth:Cthe_1509 protein of unknown function DUF438; hypothetical protein 2352165 5677881 Clos_2200 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513731.1 2350930 R 350688 CDS YP_001513732.1 158321225 5677882 complement(2352182..2352403) 1 NC_009922.1 PFAM: Domain of unknown function DUF1858; KEGG: drm:Dred_1604 hypothetical protein; hypothetical protein 2352403 5677882 Clos_2201 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513732.1 2352182 R 350688 CDS YP_001513733.1 158321226 5677883 complement(2352543..2353070) 1 NC_009922.1 PFAM: nucleoside recognition domain protein; KEGG: mta:Moth_1355 nucleoside recognition; nucleoside recognition domain-containing protein 2353070 5677883 Clos_2202 Alkaliphilus oremlandii OhILAs nucleoside recognition domain-containing protein YP_001513733.1 2352543 R 350688 CDS YP_001513734.1 158321227 5677884 complement(2353085..2353702) 1 NC_009922.1 PFAM: nucleoside recognition domain protein; KEGG: ade:Adeh_4076 nucleoside recognition; nucleoside recognition domain-containing protein 2353702 5677884 Clos_2203 Alkaliphilus oremlandii OhILAs nucleoside recognition domain-containing protein YP_001513734.1 2353085 R 350688 CDS YP_001513735.1 158321228 5678684 complement(2353918..2355906) 1 NC_009922.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY3380 hypothetical protein; methyl-accepting chemotaxis sensory transducer 2355906 5678684 Clos_2204 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer YP_001513735.1 2353918 R 350688 CDS YP_001513736.1 158321229 5678685 2356105..2356383 1 NC_009922.1 PFAM: cysteine-rich small domain; KEGG: cdf:CD0787 putative metal-binding protein; hypothetical protein 2356383 5678685 Clos_2205 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513736.1 2356105 D 350688 CDS YP_001513737.1 158321230 5678686 complement(2356441..2357181) 1 NC_009922.1 KEGG: cpr:CPR_1304 hypothetical protein; hypothetical protein 2357181 5678686 Clos_2206 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513737.1 2356441 R 350688 CDS YP_001513738.1 158321231 5678687 complement(2357190..2357693) 1 NC_009922.1 KEGG: tte:TTE0378 hypothetical protein; hypothetical protein 2357693 5678687 Clos_2207 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513738.1 2357190 R 350688 CDS YP_001513739.1 158321232 5678688 complement(2357713..2358303) 1 NC_009922.1 PFAM: Phosphoglycerate mutase; KEGG: cac:CAC1385 alpha-ribazole-5'-phosphate phosphatase, CobC; phosphoglycerate mutase 2358303 5678688 Clos_2208 Alkaliphilus oremlandii OhILAs phosphoglycerate mutase YP_001513739.1 2357713 R 350688 CDS YP_001513740.1 158321233 5678689 complement(2358320..2359051) 1 NC_009922.1 TIGRFAM: cobalamin 5'-phosphate synthase; PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cth:Cthe_3152 cobalamin 5'-phosphate synthase; cobalamin 5'-phosphate synthase 2359051 5678689 Clos_2209 Alkaliphilus oremlandii OhILAs cobalamin 5'-phosphate synthase YP_001513740.1 2358320 R 350688 CDS YP_001513741.1 158321234 5678690 complement(2359059..2359619) 1 NC_009922.1 PFAM: cobalbumin biosynthesis protein; KEGG: cdf:CD3438 bifunctional adenosylcobalamin biosynthesis protein; adenosylcobinamide-phosphate guanylyltransferase 2359619 5678690 Clos_2210 Alkaliphilus oremlandii OhILAs adenosylcobinamide-phosphate guanylyltransferase YP_001513741.1 2359059 R 350688 CDS YP_001513742.1 158321235 5678691 complement(2359655..2360698) 1 NC_009922.1 TIGRFAM: putative L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase class I and II; KEGG: fnu:FN0973 histidinol-phosphate aminotransferase; putative L-threonine-O-3-phosphate decarboxylase 2360698 5678691 Clos_2211 Alkaliphilus oremlandii OhILAs putative L-threonine-O-3-phosphate decarboxylase YP_001513742.1 2359655 R 350688 CDS YP_001513743.1 158321236 5678692 complement(2360722..2361672) 1 NC_009922.1 TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: cdf:CD3433 cobalamin biosynthesis protein; cobalamin biosynthesis protein CobD 2361672 5678692 Clos_2212 Alkaliphilus oremlandii OhILAs cobalamin biosynthesis protein CobD YP_001513743.1 2360722 R 350688 CDS YP_001513744.1 158321237 5678693 2362186..2363412 1 NC_009922.1 PFAM: protein of unknown function UPF0261; KEGG: cbo:CBO1534 hypothetical protein; hypothetical protein 2363412 5678693 Clos_2213 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513744.1 2362186 D 350688 CDS YP_001513745.1 158321238 5677866 2363436..2364257 1 NC_009922.1 KEGG: cbo:CBO1535 hypothetical protein; hypothetical protein 2364257 5677866 Clos_2214 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513745.1 2363436 D 350688 CDS YP_001513746.1 158321239 5677867 complement(2364320..2365030) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rci:RCIX666 ABC-type transport system, ATPase component; ABC transporter 2365030 5677867 Clos_2215 Alkaliphilus oremlandii OhILAs ABC transporter YP_001513746.1 2364320 R 350688 CDS YP_001513747.1 158321240 5677868 complement(2365033..2365722) 1 NC_009922.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbo:CBO1945 permease component of tungstate ABC transporter; binding-protein-dependent transport system inner membrane protein 2365722 5677868 Clos_2216 Alkaliphilus oremlandii OhILAs binding-protein-dependent transport system inner membrane protein YP_001513747.1 2365033 R 350688 CDS YP_001513748.1 158321241 5677869 complement(2365744..2366856) 1 NC_009922.1 PFAM: Ethanolamine utilisation protein EutH; KEGG: cdf:CD1924 putative ethanolamine/propanediol transporter; ethanolamine utilisation protein EutH 2366856 5677869 Clos_2217 Alkaliphilus oremlandii OhILAs ethanolamine utilisation protein EutH YP_001513748.1 2365744 R 350688 CDS YP_001513749.1 158321242 5677870 2367121..2367858 1 NC_009922.1 PFAM: cell wall hydrolase/autolysin; KEGG: cdf:CD0106 germination-specific N-acetylmuramoyl-L-alanine amidase; cell wall hydrolase/autolysin 2367858 5677870 Clos_2218 Alkaliphilus oremlandii OhILAs cell wall hydrolase/autolysin YP_001513749.1 2367121 D 350688 CDS YP_001513750.1 158321243 5677871 complement(2367984..2368415) 1 NC_009922.1 TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: cno:NT01CX_2337 flavodoxin; flavodoxin 2368415 5677871 Clos_2219 Alkaliphilus oremlandii OhILAs flavodoxin YP_001513750.1 2367984 R 350688 CDS YP_001513751.1 158321244 5677872 complement(2368435..2369097) 1 NC_009922.1 KEGG: cdf:CD1485 hypothetical protein; hypothetical protein 2369097 5677872 Clos_2220 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513751.1 2368435 R 350688 CDS YP_001513752.1 158321245 5677873 complement(2369250..2370176) 1 NC_009922.1 KEGG: tte:TTE0483 hypothetical protein; hypothetical protein 2370176 5677873 Clos_2221 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513752.1 2369250 R 350688 CDS YP_001513753.1 158321246 5677874 2370340..2371164 1 NC_009922.1 KEGG: drm:Dred_1384 hypothetical protein; hypothetical protein 2371164 5677874 Clos_2222 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513753.1 2370340 D 350688 CDS YP_001513754.1 158321247 5677094 complement(2371294..2375040) 1 NC_009922.1 KEGG: cno:NT01CX_2418 phosphoribosylformylglycinamidine synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; phosphoribosylformylglycinamidine synthase 2375040 5677094 Clos_2223 Alkaliphilus oremlandii OhILAs phosphoribosylformylglycinamidine synthase YP_001513754.1 2371294 R 350688 CDS YP_001513755.1 158321248 5677095 complement(2375587..2376312) 1 NC_009922.1 TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: cbo:CBO2833 glucosamine-6-phosphate deaminase; glucosamine-6-phosphate isomerase 2376312 5677095 Clos_2224 Alkaliphilus oremlandii OhILAs glucosamine-6-phosphate isomerase YP_001513755.1 2375587 R 350688 CDS YP_001513756.1 158321249 5677096 complement(2376461..2377009) 1 NC_009922.1 KEGG: mla:Mlab_0296 hypothetical protein; hypothetical protein 2377009 5677096 Clos_2225 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513756.1 2376461 R 350688 CDS YP_001513757.1 158321250 5677097 complement(2377006..2377329) 1 NC_009922.1 PFAM: transcriptional regulator PadR family protein; KEGG: mla:Mlab_0295 hypothetical protein; PadR-like family transcriptional regulator 2377329 5677097 Clos_2226 Alkaliphilus oremlandii OhILAs PadR-like family transcriptional regulator YP_001513757.1 2377006 R 350688 CDS YP_001513758.1 158321251 5677098 complement(2377669..2379264) 1 NC_009922.1 KEGG: ecs:ECs4272 hypothetical membrane protein; hypothetical protein 2379264 5677098 Clos_2227 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513758.1 2377669 R 350688 CDS YP_001513759.1 158321252 5677099 complement(2379660..2379938) 1 NC_009922.1 hypothetical protein 2379938 5677099 Clos_2228 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513759.1 2379660 R 350688 CDS YP_001513760.1 158321253 5677100 complement(2379974..2380432) 1 NC_009922.1 KEGG: cbo:CBO2157 lipoprotein; lipoprotein 2380432 5677100 Clos_2229 Alkaliphilus oremlandii OhILAs lipoprotein YP_001513760.1 2379974 R 350688 CDS YP_001513761.1 158321254 5677101 complement(2381243..2381455) 1 NC_009922.1 KEGG: swo:Swol_1055 transposase; transposase 2381455 5677101 Clos_2230 Alkaliphilus oremlandii OhILAs transposase YP_001513761.1 2381243 R 350688 CDS YP_001513762.1 158321255 5677102 complement(2381811..2382488) 1 NC_009922.1 hypothetical protein 2382488 5677102 Clos_2231 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513762.1 2381811 R 350688 CDS YP_001513763.1 158321256 5677103 complement(2382710..2383519) 1 NC_009922.1 PFAM: Integrase catalytic region; KEGG: dsy:DSY3295 hypothetical protein; integrase catalytic region 2383519 5677103 Clos_2232 Alkaliphilus oremlandii OhILAs integrase catalytic region YP_001513763.1 2382710 R 350688 CDS YP_001513764.1 158321257 5675947 complement(2383582..2383875) 1 NC_009922.1 PFAM: transposase IS3/IS911 family protein; KEGG: dsy:DSY4613 hypothetical protein; transposase IS3/IS911 family protein 2383875 5675947 Clos_2233 Alkaliphilus oremlandii OhILAs transposase IS3/IS911 family protein YP_001513764.1 2383582 R 350688 CDS YP_001513765.1 158321258 5675948 complement(2383904..2384494) 1 NC_009922.1 KEGG: btk:BT9727_1599 hypothetical protein; hypothetical protein 2384494 5675948 Clos_2234 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513765.1 2383904 R 350688 CDS YP_001513766.1 158321259 5675949 2384774..2386279 1 NC_009922.1 KEGG: cth:Cthe_2749 hypothetical protein; hypothetical protein 2386279 5675949 Clos_2235 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513766.1 2384774 D 350688 CDS YP_001513767.1 158321260 5675950 2386279..2386998 1 NC_009922.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: swo:Swol_2219 hypothetical protein; IstB ATP binding domain-containing protein 2386998 5675950 Clos_2236 Alkaliphilus oremlandii OhILAs IstB ATP binding domain-containing protein YP_001513767.1 2386279 D 350688 CDS YP_001513768.1 158321261 5675951 complement(2387433..2387972) 1 NC_009922.1 hypothetical protein 2387972 5675951 Clos_2237 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513768.1 2387433 R 350688 CDS YP_001513769.1 158321262 5675952 complement(2388162..2388509) 1 NC_009922.1 KEGG: swo:Swol_1055 transposase; transposase 2388509 5675952 Clos_2238 Alkaliphilus oremlandii OhILAs transposase YP_001513769.1 2388162 R 350688 CDS YP_001513770.1 158321263 5675953 complement(2388537..2388914) 1 NC_009922.1 hypothetical protein 2388914 5675953 Clos_2239 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513770.1 2388537 R 350688 CDS YP_001513771.1 158321264 5675955 complement(2389943..2390509) 1 NC_009922.1 hypothetical protein 2390509 5675955 Clos_2241 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513771.1 2389943 R 350688 CDS YP_001513772.1 158321265 5675956 complement(2390697..2391353) 1 NC_009922.1 hypothetical protein 2391353 5675956 Clos_2242 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513772.1 2390697 R 350688 CDS YP_001513773.1 158321266 5676888 complement(2392241..2393275) 1 NC_009922.1 hypothetical protein 2393275 5676888 Clos_2244 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513773.1 2392241 R 350688 CDS YP_001513774.1 158321267 5676889 2393898..2394464 1 NC_009922.1 PFAM: Accessory gene regulator B; KEGG: sao:SAOUHSC_02261 accessory gene regulator protein B; accessory gene regulator B 2394464 5676889 Clos_2245 Alkaliphilus oremlandii OhILAs accessory gene regulator B YP_001513774.1 2393898 D 350688 CDS YP_001513775.1 158321268 5676890 complement(2394593..2395864) 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; KEGG: swo:Swol_2401 signal transduction histidine kinase regulating citrate/malate metabolism; signal transduction histidine kinase regulating citrate/malate metabolism 2395864 5676890 Clos_2246 Alkaliphilus oremlandii OhILAs signal transduction histidine kinase regulating citrate/malate metabolism YP_001513775.1 2394593 R 350688 CDS YP_001513776.1 158321269 5676891 complement(2395880..2396617) 1 NC_009922.1 PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: tte:TTE0561 response regulators of cell autolysis; LytTR family two component transcriptional regulator 2396617 5676891 Clos_2247 Alkaliphilus oremlandii OhILAs LytTR family two component transcriptional regulator YP_001513776.1 2395880 R 350688 CDS YP_001513777.1 158321270 5676892 complement(2396847..2397344) 1 NC_009922.1 PFAM: Rubrerythrin; KEGG: csc:Csac_1137 rubrerythrin; rubrerythrin 2397344 5676892 Clos_2248 Alkaliphilus oremlandii OhILAs rubrerythrin YP_001513777.1 2396847 R 350688 CDS YP_001513778.1 158321271 5676893 complement(2397360..2400035) 1 NC_009922.1 Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: ppd:Ppro_3520 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 2400035 5676893 Clos_2249 Alkaliphilus oremlandii OhILAs formate dehydrogenase subunit alpha YP_001513778.1 2397360 R 350688 CDS YP_001513779.1 158321272 5676894 complement(2400063..2400998) 1 NC_009922.1 PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dsy:DSY2616 hypothetical protein; ferredoxin 2400998 5676894 Clos_2250 Alkaliphilus oremlandii OhILAs ferredoxin YP_001513779.1 2400063 R 350688 CDS YP_001513780.1 158321273 5676895 complement(2401051..2402946) 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: tte:TTE0893 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit; NADH dehydrogenase (quinone) 2402946 5676895 Clos_2251 Alkaliphilus oremlandii OhILAs NADH dehydrogenase (quinone) YP_001513780.1 2401051 R 350688 CDS YP_001513781.1 158321274 5676896 complement(2402968..2403441) 1 NC_009922.1 PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: cth:Cthe_0338 NADH-quinone oxidoreductase, E subunit; NADH dehydrogenase (ubiquinone) 24 kDa subunit 2403441 5676896 Clos_2252 Alkaliphilus oremlandii OhILAs NADH dehydrogenase (ubiquinone) 24 kDa subunit YP_001513781.1 2402968 R 350688 CDS YP_001513782.1 158321275 5676364 complement(2403845..2404249) 1 NC_009922.1 hypothetical protein 2404249 5676364 Clos_2253 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513782.1 2403845 R 350688 CDS YP_001513783.1 158321276 5676365 complement(2404402..2404701) 1 NC_009922.1 hypothetical protein 2404701 5676365 Clos_2254 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513783.1 2404402 R 350688 CDS YP_001513784.1 158321277 5676366 complement(2404966..2406831) 1 NC_009922.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2406831 uvrC 5676366 uvrC Alkaliphilus oremlandii OhILAs excinuclease ABC subunit C YP_001513784.1 2404966 R 350688 CDS YP_001513785.1 158321278 5676367 complement(2407112..2407762) 1 NC_009922.1 PFAM: type IV pilus assembly PilZ; KEGG: cbo:CBO2642 hypothetical protein; type IV pilus assembly PilZ 2407762 5676367 Clos_2256 Alkaliphilus oremlandii OhILAs type IV pilus assembly PilZ YP_001513785.1 2407112 R 350688 CDS YP_001513786.1 158321279 5676368 complement(2407851..2410694) 1 NC_009922.1 KEGG: cdf:CD3411 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase; excinuclease ABC subunit A 2410694 5676368 Clos_2257 Alkaliphilus oremlandii OhILAs excinuclease ABC subunit A YP_001513786.1 2407851 R 350688 CDS YP_001513787.1 158321280 5676369 complement(2410709..2412688) 1 NC_009922.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 2412688 5676369 Clos_2258 Alkaliphilus oremlandii OhILAs excinuclease ABC subunit B YP_001513787.1 2410709 R 350688 CDS YP_001513788.1 158321281 5676370 complement(2412985..2414181) 1 NC_009922.1 KEGG: tte:TTE1974 periplasmic protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease 2414181 5676370 Clos_2259 Alkaliphilus oremlandii OhILAs carboxyl-terminal protease YP_001513788.1 2412985 R 350688 CDS YP_001513789.1 158321282 5676371 complement(2414388..2415518) 1 NC_009922.1 PFAM: peptidase M23B; KEGG: tte:TTE1975 membrane proteins related to metalloendopeptidase; peptidase M23B 2415518 5676371 Clos_2260 Alkaliphilus oremlandii OhILAs peptidase M23B YP_001513789.1 2414388 R 350688 CDS YP_001513790.1 158321283 5676372 complement(2415543..2416439) 1 NC_009922.1 PFAM: protein of unknown function DUF214; KEGG: tte:TTE1976 cell division protein; hypothetical protein 2416439 5676372 Clos_2261 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513790.1 2415543 R 350688 CDS YP_001513791.1 158321284 5676373 complement(2416429..2417154) 1 NC_009922.1 KEGG: tte:TTE1977 predicted ATPase involved in cell division; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE 2417154 5676373 Clos_2262 Alkaliphilus oremlandii OhILAs cell division ATP-binding protein FtsE YP_001513791.1 2416429 R 350688 CDS YP_001513792.1 158321285 5676877 2417383..2417952 1 NC_009922.1 PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: drm:Dred_2882 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 2417952 5676877 Clos_2263 Alkaliphilus oremlandii OhILAs 5-formyltetrahydrofolate cyclo-ligase YP_001513792.1 2417383 D 350688 CDS YP_001513793.1 158321286 5676878 complement(2418006..2420822) 1 NC_009922.1 KEGG: cth:Cthe_2182 Ig-like, group 2; Ig-like, group 2 2420822 5676878 Clos_2264 Alkaliphilus oremlandii OhILAs Ig-like, group 2 YP_001513793.1 2418006 R 350688 CDS YP_001513794.1 158321287 5676879 complement(2420988..2421446) 1 NC_009922.1 KEGG: cdf:CD3457 hypothetical protein; hypothetical protein 2421446 5676879 Clos_2265 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513794.1 2420988 R 350688 CDS YP_001513795.1 158321288 5676880 complement(2421693..2422631) 1 NC_009922.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: cpr:CPR_0288 transketolase; transketolase central region 2422631 5676880 Clos_2266 Alkaliphilus oremlandii OhILAs transketolase central region YP_001513795.1 2421693 R 350688 CDS YP_001513796.1 158321289 5676881 complement(2422631..2423455) 1 NC_009922.1 PFAM: Transketolase domain protein; KEGG: dsy:DSY4868 hypothetical protein; transketolase domain-containing protein 2423455 5676881 Clos_2267 Alkaliphilus oremlandii OhILAs transketolase domain-containing protein YP_001513796.1 2422631 R 350688 CDS YP_001513797.1 158321290 5676882 complement(2423478..2424341) 1 NC_009922.1 PFAM: protein of unknown function DUF161; KEGG: tde:TDE2546 hypothetical protein; hypothetical protein 2424341 5676882 Clos_2268 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513797.1 2423478 R 350688 CDS YP_001513798.1 158321291 5676883 complement(2424372..2425100) 1 NC_009922.1 KEGG: csc:Csac_1349 glycosyl transferase, WecB/TagA/CpsF family; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF family glycosyl transferase 2425100 5676883 Clos_2269 Alkaliphilus oremlandii OhILAs WecB/TagA/CpsF family glycosyl transferase YP_001513798.1 2424372 R 350688 CDS YP_001513799.1 158321292 5676884 complement(2425097..2426176) 1 NC_009922.1 PFAM: polysaccharide pyruvyl transferase; KEGG: cth:Cthe_2702 polysaccharide pyruvyl transferase; polysaccharide pyruvyl transferase 2426176 5676884 Clos_2270 Alkaliphilus oremlandii OhILAs polysaccharide pyruvyl transferase YP_001513799.1 2425097 R 350688 CDS YP_001513800.1 158321293 5676885 complement(2426176..2428338) 1 NC_009922.1 KEGG: tte:TTE2165 hypothetical protein; hypothetical protein 2428338 5676885 Clos_2271 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513800.1 2426176 R 350688 CDS YP_001513801.1 158321294 5676886 complement(2428417..2428905) 1 NC_009922.1 KEGG: sth:STH137 hypothetical protein; hypothetical protein 2428905 5676886 Clos_2272 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513801.1 2428417 R 350688 CDS YP_001513802.1 158321295 5677754 complement(2429069..2429419) 1 NC_009922.1 PFAM: PemK family protein; KEGG: tte:TTE2166 growth inhibitor; transcriptional modulator of MazE/toxin MazF 2429419 5677754 Clos_2273 Alkaliphilus oremlandii OhILAs transcriptional modulator of MazE/toxin MazF YP_001513802.1 2429069 R 350688 CDS YP_001513803.1 158321296 5677755 complement(2429421..2429696) 1 NC_009922.1 PFAM: CopG domain protein DNA-binding domain protein; KEGG: tte:TTE2167 predicted transcriptional regulator containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain; CopG family transcriptional regulator 2429696 5677755 Clos_2274 Alkaliphilus oremlandii OhILAs CopG family transcriptional regulator YP_001513803.1 2429421 R 350688 CDS YP_001513804.1 158321297 5677756 complement(2429793..2430965) 1 NC_009922.1 KEGG: cth:Cthe_2697 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 2430965 5677756 Clos_2275 Alkaliphilus oremlandii OhILAs alanine racemase YP_001513804.1 2429793 R 350688 CDS YP_001513805.1 158321298 5677757 complement(2430996..2431364) 1 NC_009922.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: cdf:CD3466 holo-[acyl-carrier protein] synthase; holo-acyl-carrier-protein synthase 2431364 5677757 Clos_2276 Alkaliphilus oremlandii OhILAs holo-acyl-carrier-protein synthase YP_001513805.1 2430996 R 350688 CDS YP_001513806.1 158321299 5677758 complement(2431558..2432172) 1 NC_009922.1 KEGG: cth:Cthe_2695 hypothetical protein; hypothetical protein 2432172 5677758 Clos_2277 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513806.1 2431558 R 350688 CDS YP_001513807.1 158321300 5677759 2432346..2433353 1 NC_009922.1 KEGG: cth:Cthe_1300 hypothetical protein; hypothetical protein 2433353 5677759 Clos_2278 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513807.1 2432346 D 350688 CDS YP_001513808.1 158321301 5677760 complement(2433502..2433939) 1 NC_009922.1 KEGG: nph:NP2988A hypothetical protein; hypothetical protein 2433939 5677760 Clos_2279 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513808.1 2433502 R 350688 CDS YP_001513809.1 158321302 5677761 complement(2433956..2434315) 1 NC_009922.1 KEGG: gfo:GFO_1947 conserved hypothetical protein, membrane; hypothetical protein 2434315 5677761 Clos_2280 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513809.1 2433956 R 350688 CDS YP_001513810.1 158321303 5677762 complement(2435298..2435819) 1 NC_009922.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: TOBE domain protein; KEGG: pab:PAB0103 putative sulfate transport system ATP-binding protein; DNA binding domain-containing protein 2435819 5677762 Clos_2281 Alkaliphilus oremlandii OhILAs DNA binding domain-containing protein YP_001513810.1 2435298 R 350688 CDS YP_001513811.1 158321304 5677763 complement(2435834..2436898) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD0871 putative molybdenum ABC transporter, ATP-binding protein; ABC transporter 2436898 5677763 Clos_2282 Alkaliphilus oremlandii OhILAs ABC transporter YP_001513811.1 2435834 R 350688 CDS YP_001513812.1 158321305 5676403 complement(2436895..2437581) 1 NC_009922.1 TIGRFAM: molybdate ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cdf:CD0870 putative molybdenum ABC transporter, permease protein; molybdate ABC transporter, inner membrane subunit 2437581 5676403 Clos_2283 Alkaliphilus oremlandii OhILAs molybdate ABC transporter, inner membrane subunit YP_001513812.1 2436895 R 350688 CDS YP_001513813.1 158321306 5676404 complement(2437718..2438533) 1 NC_009922.1 TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: pth:PTH_0675 ABC-type molybdate transport system, periplasmic component; molybdenum ABC transporter, periplasmic molybdate-binding protein 2438533 5676404 Clos_2284 Alkaliphilus oremlandii OhILAs molybdenum ABC transporter, periplasmic molybdate-binding protein YP_001513813.1 2437718 R 350688 CDS YP_001513814.1 158321307 5676405 2438758..2439798 1 NC_009922.1 PFAM: copper amine oxidase domain protein; KEGG: cac:CAC1508 hypothetical protein; copper amine oxidase domain-containing protein 2439798 5676405 Clos_2285 Alkaliphilus oremlandii OhILAs copper amine oxidase domain-containing protein YP_001513814.1 2438758 D 350688 CDS YP_001513815.1 158321308 5676406 complement(2439863..2441164) 1 NC_009922.1 PFAM: Citrate transporter; Na+/H+ antiporter NhaC; KEGG: cno:NT01CX_0266 Na+/H+ antiporter family protein; Na+/H+ antiporter NhaC 2441164 5676406 Clos_2286 Alkaliphilus oremlandii OhILAs Na+/H+ antiporter NhaC YP_001513815.1 2439863 R 350688 CDS YP_001513816.1 158321309 5676407 2441473..2442825 1 NC_009922.1 PFAM: amino acid permease-associated region; KEGG: cbo:CBO1377 amino acid permease; amino acid permease 2442825 5676407 Clos_2287 Alkaliphilus oremlandii OhILAs amino acid permease YP_001513816.1 2441473 D 350688 CDS YP_001513817.1 158321310 5676408 complement(2442984..2446508) 1 NC_009922.1 PFAM: SMC domain protein; KEGG: tte:TTE0266 ATPase involved in DNA repair; SMC domain-containing protein 2446508 5676408 Clos_2288 Alkaliphilus oremlandii OhILAs SMC domain-containing protein YP_001513817.1 2442984 R 350688 CDS YP_001513818.1 158321311 5676409 complement(2446498..2447718) 1 NC_009922.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: cno:NT01CX_1250 DNA repair exonuclease, putative; nuclease SbcCD subunit D 2447718 5676409 Clos_2289 Alkaliphilus oremlandii OhILAs nuclease SbcCD subunit D YP_001513818.1 2446498 R 350688 CDS YP_001513819.1 158321312 5676410 complement(2447715..2451308) 1 NC_009922.1 TIGRFAM: Recombination helicase AddA; PFAM: UvrD/REP helicase; KEGG: swo:Swol_1146 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); recombination helicase AddA 2451308 5676410 Clos_2290 Alkaliphilus oremlandii OhILAs recombination helicase AddA YP_001513819.1 2447715 R 350688 CDS YP_001513820.1 158321313 5676411 complement(2451466..2453100) 1 NC_009922.1 TIGRFAM: A/G-specific adenine glycosylase; PFAM: NUDIX hydrolase; helix-hairpin-helix motif; HhH-GPD family protein; KEGG: sth:STH1727 A/G-specific adenine glycosylase; A/G-specific adenine glycosylase 2453100 5676411 Clos_2291 Alkaliphilus oremlandii OhILAs A/G-specific adenine glycosylase YP_001513820.1 2451466 R 350688 CDS YP_001513821.1 158321314 5676412 complement(2453233..2454045) 1 NC_009922.1 hypothetical protein 2454045 5676412 Clos_2292 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513821.1 2453233 R 350688 CDS YP_001513822.1 158321315 5677894 complement(2454297..2455022) 1 NC_009922.1 KEGG: cbo:CBO1054 hypothetical protein; hypothetical protein 2455022 5677894 Clos_2293 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513822.1 2454297 R 350688 CDS YP_001513823.1 158321316 5677895 complement(2455134..2456336) 1 NC_009922.1 PFAM: metallophosphoesterase; SMART: serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; KEGG: tva:TVAG_405950 Ser/Thr protein phosphatase, putative; metallophosphoesterase 2456336 5677895 Clos_2294 Alkaliphilus oremlandii OhILAs metallophosphoesterase YP_001513823.1 2455134 R 350688 CDS YP_001513824.1 158321317 5677896 complement(2456578..2457264) 1 NC_009922.1 KEGG: dsy:DSY2128 hypothetical protein; hypothetical protein 2457264 5677896 Clos_2295 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513824.1 2456578 R 350688 CDS YP_001513825.1 158321318 5677897 complement(2457355..2457684) 1 NC_009922.1 hypothetical protein 2457684 5677897 Clos_2296 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513825.1 2457355 R 350688 CDS YP_001513826.1 158321319 5677898 complement(2457904..2458146) 1 NC_009922.1 hypothetical protein 2458146 5677898 Clos_2297 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513826.1 2457904 R 350688 CDS YP_001513827.1 158321320 5677899 complement(2458238..2459596) 1 NC_009922.1 PFAM: KWG Leptospira repeat protein; copper amine oxidase domain protein; KEGG: cbo:CBO1667 hypothetical protein; copper amine oxidase domain-containing protein 2459596 5677899 Clos_2298 Alkaliphilus oremlandii OhILAs copper amine oxidase domain-containing protein YP_001513827.1 2458238 R 350688 CDS YP_001513828.1 158321321 5677900 2460257..2462164 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY2132 hypothetical protein; ABC transporter 2462164 5677900 Clos_2299 Alkaliphilus oremlandii OhILAs ABC transporter YP_001513828.1 2460257 D 350688 CDS YP_001513829.1 158321322 5677901 complement(2462827..2466261) 1 NC_009922.1 TIGRFAM: ATP-dependent nuclease subunit AddB; KEGG: swo:Swol_1142 ATP-dependent nuclease subunit B; ATP-dependent nuclease subunit AddB 2466261 5677901 Clos_2300 Alkaliphilus oremlandii OhILAs ATP-dependent nuclease subunit AddB YP_001513829.1 2462827 R 350688 CDS YP_001513830.1 158321323 5677902 complement(2466457..2467173) 1 NC_009922.1 PFAM: M penetrans paralogue 2 domain protein; KEGG: cdf:CD2076 hypothetical protein; hypothetical protein 2467173 5677902 Clos_2301 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513830.1 2466457 R 350688 CDS YP_001513831.1 158321324 5677903 complement(2467397..2468905) 1 NC_009922.1 PFAM: Domain of unknown function DUF1846; KEGG: cbo:CBO0329 hypothetical protein; hypothetical protein 2468905 5677903 Clos_2302 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513831.1 2467397 R 350688 CDS YP_001513832.1 158321325 5678099 2469296..2470345 1 NC_009922.1 PFAM: conserved hypothetical protein; KEGG: ctc:CTC01844 membrane spanning protein, similar to vegetatible incompatibility protein HET-E-1; hypothetical protein 2470345 5678099 Clos_2303 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513832.1 2469296 D 350688 CDS YP_001513833.1 158321326 5678100 complement(2470393..2471553) 1 NC_009922.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 2471553 5678100 Clos_2304 Alkaliphilus oremlandii OhILAs aspartate aminotransferase YP_001513833.1 2470393 R 350688 CDS YP_001513834.1 158321327 5678101 complement(2471614..2472987) 1 NC_009922.1 PFAM: nucleoside recognition domain protein; KEGG: oih:OB1260 hypothetical protein; nucleoside recognition domain-containing protein 2472987 5678101 Clos_2305 Alkaliphilus oremlandii OhILAs nucleoside recognition domain-containing protein YP_001513834.1 2471614 R 350688 CDS YP_001513835.1 158321328 5678102 complement(2473016..2474119) 1 NC_009922.1 PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: cno:NT01CX_1239 putative glycerol dehydrogenase; iron-containing alcohol dehydrogenase 2474119 5678102 Clos_2306 Alkaliphilus oremlandii OhILAs iron-containing alcohol dehydrogenase YP_001513835.1 2473016 R 350688 CDS YP_001513836.1 158321329 5678103 complement(2474333..2476123) 1 NC_009922.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC00811 fumarate reductase flavoprotein subunit precursor; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 2476123 5678103 Clos_2307 Alkaliphilus oremlandii OhILAs fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_001513836.1 2474333 R 350688 CDS YP_001513837.1 158321330 5678104 complement(2476319..2477557) 1 NC_009922.1 PFAM: regulatory protein MerR; KEGG: btl:BALH_2398 possible transcriptional regulator, MerR family; MerR family transcriptional regulator 2477557 5678104 Clos_2308 Alkaliphilus oremlandii OhILAs MerR family transcriptional regulator YP_001513837.1 2476319 R 350688 CDS YP_001513838.1 158321331 5678105 complement(2477715..2478359) 1 NC_009922.1 PFAM: peptidase M50; KEGG: drm:Dred_1132 peptidase M50; peptidase M50 2478359 5678105 Clos_2309 Alkaliphilus oremlandii OhILAs peptidase M50 YP_001513838.1 2477715 R 350688 CDS YP_001513839.1 158321332 5678106 complement(2478356..2480227) 1 NC_009922.1 KEGG: dsy:DSY4531 hypothetical protein; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 2480227 5678106 Clos_2310 Alkaliphilus oremlandii OhILAs ATP-dependent metalloprotease FtsH YP_001513839.1 2478356 R 350688 CDS YP_001513840.1 158321333 5678107 complement(2480439..2481599) 1 NC_009922.1 TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: ctc:CTC02449 spore germination protein B2/KB; spore germination protein 2481599 5678107 Clos_2311 Alkaliphilus oremlandii OhILAs spore germination protein YP_001513840.1 2480439 R 350688 CDS YP_001513841.1 158321334 5678108 2481626..2483053 1 NC_009922.1 PFAM: GerA spore germination protein; KEGG: ctc:CTC02448 spore germination protein KA; GerA spore germination protein 2483053 5678108 Clos_2312 Alkaliphilus oremlandii OhILAs GerA spore germination protein YP_001513841.1 2481626 D 350688 CDS YP_001513842.1 158321335 5678199 2483050..2484159 1 NC_009922.1 PFAM: spore germination B3 GerAC family protein; KEGG: ctc:CTC02447 spore germination protein B3/KC; spore germination B3 GerAC family protein 2484159 5678199 Clos_2313 Alkaliphilus oremlandii OhILAs spore germination B3 GerAC family protein YP_001513842.1 2483050 D 350688 CDS YP_001513843.1 158321336 5678200 complement(2484315..2485352) 1 NC_009922.1 PFAM: peptidase M42 family protein; KEGG: cpf:CPF_1252 aminopeptidase, M42 family; peptidase M42 family protein 2485352 5678200 Clos_2314 Alkaliphilus oremlandii OhILAs peptidase M42 family protein YP_001513843.1 2484315 R 350688 CDS YP_001513844.1 158321337 5678201 complement(2485622..2486161) 1 NC_009922.1 KEGG: swo:Swol_1797 hypothetical protein; hypothetical protein 2486161 5678201 Clos_2315 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513844.1 2485622 R 350688 CDS YP_001513845.1 158321338 5678202 2486726..2487310 1 NC_009922.1 PFAM: regulatory protein TetR; KEGG: bha:BH3207 hypothetical protein; TetR family transcriptional regulator 2487310 5678202 Clos_2316 Alkaliphilus oremlandii OhILAs TetR family transcriptional regulator YP_001513845.1 2486726 D 350688 CDS YP_001513846.1 158321339 5678203 2487492..2489429 1 NC_009922.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tte:TTE2131 NADH:flavin oxidoreductase, Old Yellow enzyme family; NADH:flavin oxidoreductase 2489429 5678203 Clos_2317 Alkaliphilus oremlandii OhILAs NADH:flavin oxidoreductase YP_001513846.1 2487492 D 350688 CDS YP_001513847.1 158321340 5678204 complement(2489498..2490256) 1 NC_009922.1 KEGG: cac:CAC0222 exodeoxyribonuclease (exoA); TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 2490256 5678204 Clos_2318 Alkaliphilus oremlandii OhILAs exodeoxyribonuclease III Xth YP_001513847.1 2489498 R 350688 CDS YP_001513848.1 158321341 5678205 complement(2490305..2490685) 1 NC_009922.1 PFAM: Protein of unknown function CGGC region; KEGG: ctc:CTC00418 hypothetical protein; hypothetical protein 2490685 5678205 Clos_2319 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513848.1 2490305 R 350688 CDS YP_001513849.1 158321342 5678206 2490865..2491725 1 NC_009922.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bld:BLi03444 hypothetical protein; hypothetical protein 2491725 5678206 Clos_2320 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513849.1 2490865 D 350688 CDS YP_001513850.1 158321343 5678207 2491874..2492782 1 NC_009922.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: ctc:CTC01432 transcriptional regulatory protein; AraC family transcriptional regulator 2492782 5678207 Clos_2321 Alkaliphilus oremlandii OhILAs AraC family transcriptional regulator YP_001513850.1 2491874 D 350688 CDS YP_001513851.1 158321344 5678208 2492863..2493618 1 NC_009922.1 PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: dsy:DSY1603 hypothetical protein; methyltransferase type 12 2493618 5678208 Clos_2322 Alkaliphilus oremlandii OhILAs methyltransferase type 12 YP_001513851.1 2492863 D 350688 CDS YP_001513852.1 158321345 5678350 complement(2493788..2494021) 1 NC_009922.1 hypothetical protein 2494021 5678350 Clos_2323 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513852.1 2493788 R 350688 CDS YP_001513853.1 158321346 5678351 complement(2494070..2495044) 1 NC_009922.1 PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: gsu:GSU1122 HD domain protein; metal dependent phosphohydrolase 2495044 5678351 Clos_2324 Alkaliphilus oremlandii OhILAs metal dependent phosphohydrolase YP_001513853.1 2494070 R 350688 CDS YP_001513854.1 158321347 5678352 complement(2495387..2495947) 1 NC_009922.1 KEGG: dsy:DSY3868 hypothetical protein; hypothetical protein 2495947 5678352 Clos_2325 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513854.1 2495387 R 350688 CDS YP_001513855.1 158321348 5678353 complement(2496065..2497954) 1 NC_009922.1 PFAM: von Willebrand factor type A; ATPase associated with various cellular activities AAA_5; KEGG: dsy:DSY3869 hypothetical protein; magnesium chelatase 2497954 5678353 Clos_2326 Alkaliphilus oremlandii OhILAs magnesium chelatase YP_001513855.1 2496065 R 350688 CDS YP_001513856.1 158321349 5678354 complement(2497979..2499013) 1 NC_009922.1 KEGG: dsy:DSY3870 hypothetical protein; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase; magnesium chelatase 2499013 5678354 Clos_2327 Alkaliphilus oremlandii OhILAs magnesium chelatase YP_001513856.1 2497979 R 350688 CDS YP_001513857.1 158321350 5678355 complement(2499047..2502769) 1 NC_009922.1 PFAM: CobN/magnesium chelatase; KEGG: dsy:DSY3871 cobalamin biosynthesis protein; cobaltochelatase 2502769 5678355 Clos_2328 Alkaliphilus oremlandii OhILAs cobaltochelatase YP_001513857.1 2499047 R 350688 CDS YP_001513858.1 158321351 5678356 complement(2502800..2503804) 1 NC_009922.1 PFAM: transport system permease protein; KEGG: dsy:DSY3873 hypothetical protein; transport system permease 2503804 5678356 Clos_2329 Alkaliphilus oremlandii OhILAs transport system permease YP_001513858.1 2502800 R 350688 CDS YP_001513859.1 158321352 5678357 complement(2503785..2504828) 1 NC_009922.1 PFAM: periplasmic binding protein; KEGG: dsy:DSY3874 hypothetical protein; periplasmic binding protein 2504828 5678357 Clos_2330 Alkaliphilus oremlandii OhILAs periplasmic binding protein YP_001513859.1 2503785 R 350688 CDS YP_001513860.1 158321353 5678358 2505247..2505876 1 NC_009922.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: amt:Amet_4180 rubrerythrin; rubrerythrin 2505876 5678358 Clos_2331 Alkaliphilus oremlandii OhILAs rubrerythrin YP_001513860.1 2505247 D 350688 CDS YP_001513861.1 158321354 5677272 complement(2505932..2506822) 1 NC_009922.1 catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 2506822 5677272 Clos_2332 Alkaliphilus oremlandii OhILAs phosphatidylserine decarboxylase YP_001513861.1 2505932 R 350688 CDS YP_001513862.1 158321355 5677273 complement(2506883..2507326) 1 NC_009922.1 KEGG: amt:Amet_4199 hypothetical protein; hypothetical protein 2507326 5677273 Clos_2333 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513862.1 2506883 R 350688 CDS YP_001513863.1 158321356 5677275 complement(2507808..2508080) 1 NC_009922.1 hypothetical protein 2508080 5677275 Clos_2335 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513863.1 2507808 R 350688 CDS YP_001513864.1 158321357 5677276 2508523..2508789 1 NC_009922.1 hypothetical protein 2508789 5677276 Clos_2336 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513864.1 2508523 D 350688 CDS YP_001513865.1 158321358 5677277 complement(2508812..2509579) 1 NC_009922.1 KEGG: bld:BLi00939 3-dehydroquinate dehydratase; RBL00797; TIGRFAM: 3-dehydroquinate dehydratase, type I; PFAM: dehydroquinase class I; 3-dehydroquinate dehydratase 2509579 5677277 Clos_2337 Alkaliphilus oremlandii OhILAs 3-dehydroquinate dehydratase YP_001513865.1 2508812 R 350688 CDS YP_001513866.1 158321359 5677278 complement(2509606..2510682) 1 NC_009922.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: ctc:CTC00125 hypothetical protein; 2-nitropropane dioxygenase 2510682 5677278 Clos_2338 Alkaliphilus oremlandii OhILAs 2-nitropropane dioxygenase YP_001513866.1 2509606 R 350688 CDS YP_001513867.1 158321360 5677279 complement(2510711..2511739) 1 NC_009922.1 PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: ctc:CTC01037 L-allo-threonine aldolase; threonine aldolase 2511739 5677279 Clos_2339 Alkaliphilus oremlandii OhILAs threonine aldolase YP_001513867.1 2510711 R 350688 CDS YP_001513868.1 158321361 5677280 complement(2511770..2513155) 1 NC_009922.1 PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: drm:Dred_0037 DEAD/DEAH box helicase domain protein; DEAD/DEAH box helicase 2513155 5677280 Clos_2340 Alkaliphilus oremlandii OhILAs DEAD/DEAH box helicase YP_001513868.1 2511770 R 350688 CDS YP_001513869.1 158321362 5677281 complement(2513475..2514866) 1 NC_009922.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2514866 asnC 5677281 asnC Alkaliphilus oremlandii OhILAs asparaginyl-tRNA synthetase YP_001513869.1 2513475 R 350688 CDS YP_001513870.1 158321363 5676673 complement(2515430..2516323) 1 NC_009922.1 PFAM: regulatory protein LysR; KEGG: sen:SACE_2761 hypothetical protein; LysR family transcriptional regulator 2516323 5676673 Clos_2342 Alkaliphilus oremlandii OhILAs LysR family transcriptional regulator YP_001513870.1 2515430 R 350688 CDS YP_001513871.1 158321364 5676674 2516603..2517898 1 NC_009922.1 PFAM: aminotransferase class V; KEGG: bam:Bamb_6253 aminotransferase, class V; class V aminotransferase 2517898 5676674 Clos_2343 Alkaliphilus oremlandii OhILAs class V aminotransferase YP_001513871.1 2516603 D 350688 CDS YP_001513872.1 158321365 5676675 2517916..2519136 1 NC_009922.1 PFAM: sodium:dicarboxylate symporter; KEGG: fnu:FN0604 proton/sodium-aspartate symport protein; sodium:dicarboxylate symporter 2519136 5676675 Clos_2344 Alkaliphilus oremlandii OhILAs sodium:dicarboxylate symporter YP_001513872.1 2517916 D 350688 CDS YP_001513873.1 158321366 5676676 2519344..2519643 1 NC_009922.1 hypothetical protein 2519643 5676676 Clos_2345 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513873.1 2519344 D 350688 CDS YP_001513874.1 158321367 5676677 2519709..2520293 1 NC_009922.1 PFAM: polysaccharide deacetylase; KEGG: cbo:CBO2775 probable polysaccharide deacetylase; polysaccharide deacetylase 2520293 5676677 Clos_2346 Alkaliphilus oremlandii OhILAs polysaccharide deacetylase YP_001513874.1 2519709 D 350688 CDS YP_001513875.1 158321368 5676678 complement(2520456..2520710) 1 NC_009922.1 hypothetical protein 2520710 5676678 Clos_2347 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513875.1 2520456 R 350688 CDS YP_001513876.1 158321369 5676679 complement(2521072..2521524) 1 NC_009922.1 KEGG: cbo:CBO2289 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 2521524 5676679 Clos_2348 Alkaliphilus oremlandii OhILAs peptide deformylase YP_001513876.1 2521072 R 350688 CDS YP_001513877.1 158321370 5676680 complement(2521525..2521761) 1 NC_009922.1 PFAM: helix-turn-helix domain protein; KEGG: cac:CAC2473 predicted transcriptional regulator; XRE family transcriptional regulator 2521761 5676680 Clos_2349 Alkaliphilus oremlandii OhILAs XRE family transcriptional regulator YP_001513877.1 2521525 R 350688 CDS YP_001513878.1 158321371 5676681 complement(2521876..2522481) 1 NC_009922.1 PFAM: VanZ family protein; KEGG: cbo:CBO2787 membrane protein; VanZ family protein 2522481 5676681 Clos_2350 Alkaliphilus oremlandii OhILAs VanZ family protein YP_001513878.1 2521876 R 350688 CDS YP_001513879.1 158321372 5676682 complement(2522465..2523865) 1 NC_009922.1 KEGG: btk:BT9727_0955 cell division protein, FtsW/RodA/SpoVE family; cell division membrane protein-like protein 2523865 5676682 Clos_2351 Alkaliphilus oremlandii OhILAs cell division membrane protein-like protein YP_001513879.1 2522465 R 350688 CDS YP_001513880.1 158321373 5677315 complement(2523849..2524187) 1 NC_009922.1 PFAM: transcriptional regulator PadR family protein; KEGG: cth:Cthe_1895 transcriptional regulator, PadR-like family; PadR-like family transcriptional regulator 2524187 5677315 Clos_2352 Alkaliphilus oremlandii OhILAs PadR-like family transcriptional regulator YP_001513880.1 2523849 R 350688 CDS YP_001513881.1 158321374 5677316 complement(2524306..2525583) 1 NC_009922.1 PFAM: major facilitator superfamily MFS_1; KEGG: bcz:BCZK2412 permease; major facilitator transporter 2525583 5677316 Clos_2353 Alkaliphilus oremlandii OhILAs major facilitator transporter YP_001513881.1 2524306 R 350688 CDS YP_001513882.1 158321375 5677317 complement(2525776..2527026) 1 NC_009922.1 PFAM: regulatory protein MerR; KEGG: btl:BALH_2398 possible transcriptional regulator, MerR family; MerR family transcriptional regulator 2527026 5677317 Clos_2354 Alkaliphilus oremlandii OhILAs MerR family transcriptional regulator YP_001513882.1 2525776 R 350688 CDS YP_001513883.1 158321376 5677318 complement(2527058..2527423) 1 NC_009922.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cbo:CBO1531 glyoxylase-family protein; glyoxalase/bleomycin resistance protein/dioxygenase 2527423 5677318 Clos_2355 Alkaliphilus oremlandii OhILAs glyoxalase/bleomycin resistance protein/dioxygenase YP_001513883.1 2527058 R 350688 CDS YP_001513884.1 158321377 5677319 complement(2527451..2529853) 1 NC_009922.1 PFAM: DEAD_2 domain protein; SMART: DEXDc2; helicase c2; KEGG: cth:Cthe_0289 DEAD_2; DEAD/DEAH box helicase 2529853 5677319 Clos_2356 Alkaliphilus oremlandii OhILAs DEAD/DEAH box helicase YP_001513884.1 2527451 R 350688 CDS YP_001513885.1 158321378 5677320 complement(2529865..2530398) 1 NC_009922.1 KEGG: mla:Mlab_0151 hypothetical protein; hypothetical protein 2530398 5677320 Clos_2357 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513885.1 2529865 R 350688 CDS YP_001513886.1 158321379 5677321 complement(2530642..2530941) 1 NC_009922.1 PFAM: protein of unknown function DUF77; KEGG: mta:Moth_2497 protein of unknown function DUF77; hypothetical protein 2530941 5677321 Clos_2358 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513886.1 2530642 R 350688 CDS YP_001513887.1 158321380 5677322 complement(2531003..2531644) 1 NC_009922.1 KEGG: cpf:CPF_1678 pyrrolidone-carboxylate peptidase; TIGRFAM: pyrrolidone-carboxylate peptidase; PFAM: peptidase C15 pyroglutamyl peptidase I; pyrrolidone-carboxylate peptidase 2531644 5677322 Clos_2359 Alkaliphilus oremlandii OhILAs pyrrolidone-carboxylate peptidase YP_001513887.1 2531003 R 350688 CDS YP_001513888.1 158321381 5677323 complement(2531887..2532543) 1 NC_009922.1 KEGG: cdf:CD2678 butyrate--acetoacetate CoA-transferase subunit B; TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 2532543 5677323 Clos_2360 Alkaliphilus oremlandii OhILAs 3-oxoacid CoA-transferase subunit B YP_001513888.1 2531887 R 350688 CDS YP_001513889.1 158321382 5677324 complement(2532543..2533196) 1 NC_009922.1 KEGG: cdf:CD2677 butyrate--acetoacetate CoA-transferase subunit A; TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 2533196 5677324 Clos_2361 Alkaliphilus oremlandii OhILAs 3-oxoacid CoA-transferase subunit A YP_001513889.1 2532543 R 350688 CDS YP_001513890.1 158321383 5678226 complement(2533387..2534904) 1 NC_009922.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: ctc:CTC00707 transcriptional regulatory protein; putative sigma-54 specific transcriptional regulator 2534904 5678226 Clos_2362 Alkaliphilus oremlandii OhILAs putative sigma-54 specific transcriptional regulator YP_001513890.1 2533387 R 350688 CDS YP_001513891.1 158321384 5678227 2535052..2536326 1 NC_009922.1 PFAM: cytochrome c552; KEGG: dsy:DSY2472 cytochrome c nitrite reductase catalytic subunit NrfA; nitrite reductase (cytochrome; ammonia-forming) 2536326 5678227 Clos_2363 Alkaliphilus oremlandii OhILAs nitrite reductase (cytochrome; ammonia-forming) YP_001513891.1 2535052 D 350688 CDS YP_001513892.1 158321385 5678228 2536385..2537428 1 NC_009922.1 KEGG: swo:Swol_1520 ResB protein required for cytochrome c biosynthesis-like protein; ResB protein required for cytochrome c biosynthesis-like protein 2537428 5678228 Clos_2364 Alkaliphilus oremlandii OhILAs ResB protein required for cytochrome c biosynthesis-like protein YP_001513892.1 2536385 D 350688 CDS YP_001513893.1 158321386 5678229 2537491..2538327 1 NC_009922.1 PFAM: cytochrome c assembly protein; KEGG: mta:Moth_2200 cytochrome c assembly protein; cytochrome c assembly protein 2538327 5678229 Clos_2365 Alkaliphilus oremlandii OhILAs cytochrome c assembly protein YP_001513893.1 2537491 D 350688 CDS YP_001513894.1 158321387 5678230 complement(2538504..2539205) 1 NC_009922.1 KEGG: dsy:DSY2099 hypothetical protein; hypothetical protein 2539205 5678230 Clos_2366 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513894.1 2538504 R 350688 CDS YP_001513895.1 158321388 5678231 complement(2539625..2540977) 1 NC_009922.1 TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: cbo:CBO2302 poly A polymerase family protein; polynucleotide adenylyltransferase/metal dependent phosphohydrolase 2540977 5678231 Clos_2367 Alkaliphilus oremlandii OhILAs polynucleotide adenylyltransferase/metal dependent phosphohydrolase YP_001513895.1 2539625 R 350688 CDS YP_001513896.1 158321389 5678232 complement(2540974..2541471) 1 NC_009922.1 PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: cbo:CBO1509 hypothetical protein; YbaK/prolyl-tRNA synthetase associated domain-containing protein 2541471 5678232 Clos_2368 Alkaliphilus oremlandii OhILAs YbaK/prolyl-tRNA synthetase associated domain-containing protein YP_001513896.1 2540974 R 350688 CDS YP_001513897.1 158321390 5678233 complement(2541489..2542643) 1 NC_009922.1 PFAM: protein of unknown function DUF405; protein of unknown function DUF418; KEGG: bca:BCE_1699 membrane protein, putative; hypothetical protein 2542643 5678233 Clos_2369 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513897.1 2541489 R 350688 CDS YP_001513898.1 158321391 5678234 complement(2542815..2544854) 1 NC_009922.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY4989 hypothetical protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 2544854 5678234 Clos_2370 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer with Cache sensor YP_001513898.1 2542815 R 350688 CDS YP_001513899.1 158321392 5678235 2545018..2546658 1 NC_009922.1 PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: cth:Cthe_0611 RNA-metabolising metallo-beta-lactamase; RNA-metabolising metallo-beta-lactamase 2546658 5678235 Clos_2371 Alkaliphilus oremlandii OhILAs RNA-metabolising metallo-beta-lactamase YP_001513899.1 2545018 D 350688 CDS YP_001513900.1 158321393 5676553 complement(2546815..2547894) 1 NC_009922.1 TIGRFAM: Sporulation integral membrane protein YtvI; PFAM: protein of unknown function UPF0118; KEGG: cdf:CD2273 hypothetical protein; sporulation integral membrane protein YtvI 2547894 5676553 Clos_2372 Alkaliphilus oremlandii OhILAs sporulation integral membrane protein YtvI YP_001513900.1 2546815 R 350688 CDS YP_001513901.1 158321394 5676554 complement(2548037..2549293) 1 NC_009922.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: ctc:CTC02158 putative anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase; glycoside hydrolase family 3 protein 2549293 5676554 Clos_2373 Alkaliphilus oremlandii OhILAs glycoside hydrolase family 3 protein YP_001513901.1 2548037 R 350688 CDS YP_001513902.1 158321395 5676555 complement(2549337..2550260) 1 NC_009922.1 KEGG: cth:Cthe_1836 hypothetical protein; hypothetical protein 2550260 5676555 Clos_2374 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513902.1 2549337 R 350688 CDS YP_001513903.1 158321396 5676556 complement(2550414..2551148) 1 NC_009922.1 PFAM: purine or other phosphorylase family 1; KEGG: ssv:SSU98_0737 uridine phosphorylase; purine phosphorylase family 1 2551148 5676556 Clos_2375 Alkaliphilus oremlandii OhILAs purine phosphorylase family 1 YP_001513903.1 2550414 R 350688 CDS YP_001513904.1 158321397 5676557 complement(2551150..2552466) 1 NC_009922.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: tte:TTE1674 dihydrolipoamide dehydrogenase/glutathione oxidoreductase and related enzymes; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2552466 5676557 Clos_2376 Alkaliphilus oremlandii OhILAs FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001513904.1 2551150 R 350688 CDS YP_001513905.1 158321398 5676558 complement(2552456..2553367) 1 NC_009922.1 PFAM: inner-membrane translocator; KEGG: drm:Dred_2766 inner-membrane translocator; inner-membrane translocator 2553367 5676558 Clos_2377 Alkaliphilus oremlandii OhILAs inner-membrane translocator YP_001513905.1 2552456 R 350688 CDS YP_001513906.1 158321399 5676559 complement(2553373..2554431) 1 NC_009922.1 PFAM: inner-membrane translocator; KEGG: tma:TM0104 simple sugar transport system permease protein; inner-membrane translocator 2554431 5676559 Clos_2378 Alkaliphilus oremlandii OhILAs inner-membrane translocator YP_001513906.1 2553373 R 350688 CDS YP_001513907.1 158321400 5676560 complement(2554412..2555971) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM0103 simple sugar transport system ATP-binding protein; ABC transporter 2555971 5676560 Clos_2379 Alkaliphilus oremlandii OhILAs ABC transporter YP_001513907.1 2554412 R 350688 CDS YP_001513908.1 158321401 5676561 complement(2556033..2557055) 1 NC_009922.1 PFAM: basic membrane lipoprotein; KEGG: tte:TTE0457 Surface lipoprotein; basic membrane lipoprotein 2557055 5676561 Clos_2380 Alkaliphilus oremlandii OhILAs basic membrane lipoprotein YP_001513908.1 2556033 R 350688 CDS YP_001513909.1 158321402 5676562 complement(2557105..2557773) 1 NC_009922.1 PFAM: cyclic nucleotide-binding; KEGG: ssu:SSU05_0736 hypothetical protein; cyclic nucleotide-binding protein 2557773 5676562 Clos_2381 Alkaliphilus oremlandii OhILAs cyclic nucleotide-binding protein YP_001513909.1 2557105 R 350688 CDS YP_001513910.1 158321403 5676907 complement(2557984..2559333) 1 NC_009922.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 2559333 glmM 5676907 glmM Alkaliphilus oremlandii OhILAs phosphoglucosamine mutase YP_001513910.1 2557984 R 350688 CDS YP_001513911.1 158321404 5676908 complement(2559494..2560966) 1 NC_009922.1 PFAM: protein of unknown function UPF0061; KEGG: btk:BT9727_3274 hypothetical protein; hypothetical protein 2560966 5676908 Clos_2383 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513911.1 2559494 R 350688 CDS YP_001513912.1 158321405 5676909 complement(2561195..2563333) 1 NC_009922.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: bha:BH3903 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 2563333 5676909 Clos_2384 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer with Cache sensor YP_001513912.1 2561195 R 350688 CDS YP_001513913.1 158321406 5676910 complement(2563463..2563759) 1 NC_009922.1 PFAM: microcompartments protein; KEGG: cbo:CBO2106 ethanolamine utilization protein; microcompartments protein 2563759 5676910 Clos_2385 Alkaliphilus oremlandii OhILAs microcompartments protein YP_001513913.1 2563463 R 350688 CDS YP_001513914.1 158321407 5676911 complement(2563859..2564509) 1 NC_009922.1 PFAM: Propanediol utilization protein; KEGG: ctc:CTC01440 hypothetical protein; propanediol utilization protein 2564509 5676911 Clos_2386 Alkaliphilus oremlandii OhILAs propanediol utilization protein YP_001513914.1 2563859 R 350688 CDS YP_001513915.1 158321408 5676912 complement(2564511..2566040) 1 NC_009922.1 TIGRFAM: acetaldehyde dehydrogenase (acetylating); KEGG: cbo:CBO2108 aldehyde-alcohol dehydrogenase; acetaldehyde dehydrogenase 2566040 5676912 Clos_2387 Alkaliphilus oremlandii OhILAs acetaldehyde dehydrogenase YP_001513915.1 2564511 R 350688 CDS YP_001513916.1 158321409 5676913 complement(2566078..2566818) 1 NC_009922.1 PFAM: microcompartments protein; KEGG: cbo:CBO2109 propanediol/ethanolamine utilization protein; microcompartments protein 2566818 5676913 Clos_2388 Alkaliphilus oremlandii OhILAs microcompartments protein YP_001513916.1 2566078 R 350688 CDS YP_001513917.1 158321410 5676914 complement(2566841..2567494) 1 NC_009922.1 PFAM: protein of unknown function DUF861 cupin_3; Ethanolamine utilisation EutQ family protein; KEGG: cbo:CBO2110 ethanolamine utilization protein; ethanolamine utilisation EutQ family protein 2567494 5676914 Clos_2389 Alkaliphilus oremlandii OhILAs ethanolamine utilisation EutQ family protein YP_001513917.1 2566841 R 350688 CDS YP_001513918.1 158321411 5676915 complement(2567552..2568094) 1 NC_009922.1 PFAM: microcompartments protein; KEGG: dsy:DSY4996 hypothetical protein; microcompartments protein 2568094 5676915 Clos_2390 Alkaliphilus oremlandii OhILAs microcompartments protein YP_001513918.1 2567552 R 350688 CDS YP_001513919.1 158321412 5676916 complement(2568096..2569424) 1 NC_009922.1 PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: drm:Dred_3270 respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; respiratory-chain NADH dehydrogenase domain-containing protein 2569424 5676916 Clos_2391 Alkaliphilus oremlandii OhILAs respiratory-chain NADH dehydrogenase domain-containing protein YP_001513919.1 2568096 R 350688 CDS YP_001513920.1 158321413 5676252 complement(2569445..2569705) 1 NC_009922.1 PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: cbo:CBO2111 ethanolamine utilization protein; ethanolamine utilization protein EutN/carboxysome structural protein Ccml 2569705 5676252 Clos_2392 Alkaliphilus oremlandii OhILAs ethanolamine utilization protein EutN/carboxysome structural protein Ccml YP_001513920.1 2569445 R 350688 CDS YP_001513921.1 158321414 5676253 complement(2569746..2570591) 1 NC_009922.1 TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: cbo:CBO2113 ethanolamine utilization protein; ethanolamine utilization protein EutJ family protein 2570591 5676253 Clos_2393 Alkaliphilus oremlandii OhILAs ethanolamine utilization protein EutJ family protein YP_001513921.1 2569746 R 350688 CDS YP_001513922.1 158321415 5676254 complement(2570573..2571262) 1 NC_009922.1 KEGG: ctc:CTC01445 hypothetical protein; hypothetical protein 2571262 5676254 Clos_2394 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513922.1 2570573 R 350688 CDS YP_001513923.1 158321416 5676255 complement(2571275..2571715) 1 NC_009922.1 KEGG: cbo:CBO2115 ethanolamine utilization protein; ethanolamine utilization protein 2571715 5676255 Clos_2395 Alkaliphilus oremlandii OhILAs ethanolamine utilization protein YP_001513923.1 2571275 R 350688 CDS YP_001513924.1 158321417 5676256 complement(2571712..2572065) 1 NC_009922.1 PFAM: microcompartments protein; KEGG: cbo:CBO2116 ethanolamine utilization protein; microcompartments protein 2572065 5676256 Clos_2396 Alkaliphilus oremlandii OhILAs microcompartments protein YP_001513924.1 2571712 R 350688 CDS YP_001513925.1 158321418 5676257 complement(2572090..2573040) 1 NC_009922.1 KEGG: cbo:CBO2117 pyruvate formate-lyase activating enzyme; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Radical SAM domain protein; glycyl-radical activating family protein 2573040 5676257 Clos_2397 Alkaliphilus oremlandii OhILAs glycyl-radical activating family protein YP_001513925.1 2572090 R 350688 CDS YP_001513926.1 158321419 5676258 complement(2573187..2575736) 1 NC_009922.1 PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; KEGG: cbo:CBO2118 pyruvate formate-lyase; formate C-acetyltransferase 2575736 5676258 Clos_2398 Alkaliphilus oremlandii OhILAs formate C-acetyltransferase YP_001513926.1 2573187 R 350688 CDS YP_001513927.1 158321420 5676259 complement(2575785..2577275) 1 NC_009922.1 KEGG: cbo:CBO2119 aldehyde-alcohol dehydrogenase; aldehyde-alcohol dehydrogenase 2577275 5676259 Clos_2399 Alkaliphilus oremlandii OhILAs aldehyde-alcohol dehydrogenase YP_001513927.1 2575785 R 350688 CDS YP_001513928.1 158321421 5676260 complement(2577350..2577652) 1 NC_009922.1 PFAM: microcompartments protein; KEGG: dde:Dde_3284 carbon dioxide concentrating mechanism protein (PduA related)-like; microcompartments protein 2577652 5676260 Clos_2400 Alkaliphilus oremlandii OhILAs microcompartments protein YP_001513928.1 2577350 R 350688 CDS YP_001513929.1 158321422 5676261 complement(2577684..2577980) 1 NC_009922.1 PFAM: microcompartments protein; KEGG: cbo:CBO2121 propanediol utilization protein; microcompartments protein 2577980 5676261 Clos_2401 Alkaliphilus oremlandii OhILAs microcompartments protein YP_001513929.1 2577684 R 350688 CDS YP_001513930.1 158321423 5677187 complement(2578084..2578350) 1 NC_009922.1 KEGG: cbo:CBO2123 hypothetical protein; hypothetical protein 2578350 5677187 Clos_2402 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513930.1 2578084 R 350688 CDS YP_001513931.1 158321424 5677188 complement(2578350..2579444) 1 NC_009922.1 KEGG: drm:Dred_3285 hypothetical protein; hypothetical protein 2579444 5677188 Clos_2403 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513931.1 2578350 R 350688 CDS YP_001513932.1 158321425 5677189 complement(2579720..2580634) 1 NC_009922.1 PFAM: Choline/ethanolamine kinase; aminoglycoside phosphotransferase; KEGG: drm:Dred_3288 choline/ethanolamine kinase; choline/ethanolamine kinase 2580634 5677189 Clos_2404 Alkaliphilus oremlandii OhILAs choline/ethanolamine kinase YP_001513932.1 2579720 R 350688 CDS YP_001513933.1 158321426 5677190 2580950..2582113 1 NC_009922.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: drm:Dred_3279 iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 2582113 5677190 Clos_2405 Alkaliphilus oremlandii OhILAs iron-containing alcohol dehydrogenase YP_001513933.1 2580950 D 350688 CDS YP_001513934.1 158321427 5677191 2582530..2583753 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: drm:Dred_3263 histidine kinase internal region; signal transduction histidine kinase LytS 2583753 5677191 Clos_2406 Alkaliphilus oremlandii OhILAs signal transduction histidine kinase LytS YP_001513934.1 2582530 D 350688 CDS YP_001513935.1 158321428 5677192 2583725..2584486 1 NC_009922.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: drm:Dred_3262 response regulator receiver protein; two component AraC family transcriptional regulator 2584486 5677192 Clos_2407 Alkaliphilus oremlandii OhILAs two component AraC family transcriptional regulator YP_001513935.1 2583725 D 350688 CDS YP_001513936.1 158321429 5677193 complement(2584522..2585064) 1 NC_009922.1 TIGRFAM: pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: cdf:CD0118 putative subunit of oxidoreductase; pyruvate/ketoisovalerate oxidoreductase subunit gamma 2585064 5677193 Clos_2408 Alkaliphilus oremlandii OhILAs pyruvate/ketoisovalerate oxidoreductase subunit gamma YP_001513936.1 2584522 R 350688 CDS YP_001513937.1 158321430 5677194 complement(2585066..2585812) 1 NC_009922.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: cdf:CD0117 putative subunit of oxidoreductase; thiamine pyrophosphate binding domain-containing protein 2585812 5677194 Clos_2409 Alkaliphilus oremlandii OhILAs thiamine pyrophosphate binding domain-containing protein YP_001513937.1 2585066 R 350688 CDS YP_001513938.1 158321431 5677195 complement(2585812..2586873) 1 NC_009922.1 catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; 2-ketoisovalerate ferredoxin reductase 2586873 5677195 Clos_2410 Alkaliphilus oremlandii OhILAs 2-ketoisovalerate ferredoxin reductase YP_001513938.1 2585812 R 350688 CDS YP_001513939.1 158321432 5677196 complement(2586904..2587134) 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tte:TTE2199 Ferredoxin 3; 4Fe-4S ferredoxin 2587134 5677196 Clos_2411 Alkaliphilus oremlandii OhILAs 4Fe-4S ferredoxin YP_001513939.1 2586904 R 350688 CDS YP_001513940.1 158321433 5676946 complement(2587231..2587902) 1 NC_009922.1 KEGG: cdf:CD0114 putative ATP/GTP-binding protein; putative ATP/GTP-binding protein 2587902 5676946 Clos_2412 Alkaliphilus oremlandii OhILAs putative ATP/GTP-binding protein YP_001513940.1 2587231 R 350688 CDS YP_001513941.1 158321434 5676947 complement(2587914..2588990) 1 NC_009922.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 2588990 5676947 Clos_2413 Alkaliphilus oremlandii OhILAs butyrate kinase YP_001513941.1 2587914 R 350688 CDS YP_001513942.1 158321435 5676948 complement(2589088..2589996) 1 NC_009922.1 catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate; phosphate butyryltransferase 2589996 5676948 Clos_2414 Alkaliphilus oremlandii OhILAs phosphate butyryltransferase YP_001513942.1 2589088 R 350688 CDS YP_001513943.1 158321436 5676949 complement(2590317..2592059) 1 NC_009922.1 KEGG: bat:BAS4072 sensory box sigma-54 dependent DNA-binding response regulator; TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; AAA ATPase; PAS modulated sigma54 specific transcriptional regulator 2592059 5676949 Clos_2415 Alkaliphilus oremlandii OhILAs PAS modulated sigma54 specific transcriptional regulator YP_001513943.1 2590317 R 350688 CDS YP_001513944.1 158321437 5676950 complement(2592158..2593378) 1 NC_009922.1 PFAM: YbbR family protein; KEGG: tte:TTE2207 hypothetical protein; hypothetical protein 2593378 5676950 Clos_2416 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513944.1 2592158 R 350688 CDS YP_001513945.1 158321438 5676951 complement(2593371..2594198) 1 NC_009922.1 PFAM: protein of unknown function DUF147; KEGG: tte:TTE2209 hypothetical protein; hypothetical protein 2594198 5676951 Clos_2417 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513945.1 2593371 R 350688 CDS YP_001513946.1 158321439 5676952 complement(2595064..2596143) 1 NC_009922.1 PFAM: Shikimate/quinate 5-dehydrogenase; KEGG: tte:TTE2374 hypothetical protein; shikimate/quinate 5-dehydrogenase 2596143 5676952 Clos_2418 Alkaliphilus oremlandii OhILAs shikimate/quinate 5-dehydrogenase YP_001513946.1 2595064 R 350688 CDS YP_001513947.1 158321440 5676953 complement(2596148..2597560) 1 NC_009922.1 PFAM: aminotransferase class-III; KEGG: tte:TTE2339 PLP-dependent aminotransferases; class III aminotransferase 2597560 5676953 Clos_2419 Alkaliphilus oremlandii OhILAs class III aminotransferase YP_001513947.1 2596148 R 350688 CDS YP_001513948.1 158321441 5678514 complement(2617964..2619259) 1 NC_009922.1 PFAM: protein of unknown function DUF1576; KEGG: ctc:CTC00068 hypothetical protein; hypothetical protein 2619259 5678514 Clos_2420 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513948.1 2617964 R 350688 CDS YP_001513949.1 158321442 5678515 2619617..2620177 1 NC_009922.1 KEGG: cno:NT01CX_2426 hypothetical protein; signal transduction histidine kinase, LytS 2620177 5678515 Clos_2421 Alkaliphilus oremlandii OhILAs signal transduction histidine kinase, LytS YP_001513949.1 2619617 D 350688 CDS YP_001513950.1 158321443 5678516 2620193..2620450 1 NC_009922.1 TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; glutaredoxin 2; KEGG: sfx:S4119 glutaredoxin 3; glutaredoxin 3 2620450 5678516 Clos_2422 Alkaliphilus oremlandii OhILAs glutaredoxin 3 YP_001513950.1 2620193 D 350688 CDS YP_001513951.1 158321444 5678517 complement(2620491..2620871) 1 NC_009922.1 KEGG: dsy:DSY2102 hypothetical protein; hypothetical protein 2620871 5678517 Clos_2423 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513951.1 2620491 R 350688 CDS YP_001513952.1 158321445 5678518 complement(2620885..2621565) 1 NC_009922.1 PFAM: protein of unknown function DUF421; KEGG: csc:Csac_2112 protein of unknown function DUF421; hypothetical protein 2621565 5678518 Clos_2424 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513952.1 2620885 R 350688 CDS YP_001513953.1 158321446 5678519 complement(2621689..2622399) 1 NC_009922.1 PFAM: protein of unknown function DUF542 ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: cac:CAC0071 uncharacterized conserved protein, YtfE E.coli ortholog; hypothetical protein 2622399 5678519 Clos_2425 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513953.1 2621689 R 350688 CDS YP_001513954.1 158321447 5678520 complement(2622500..2623759) 1 NC_009922.1 PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: cpr:CPR_0036 transporter, putative; hypothetical protein 2623759 5678520 Clos_2426 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513954.1 2622500 R 350688 CDS YP_001513955.1 158321448 5678521 complement(2623935..2624699) 1 NC_009922.1 PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: cbo:CBO3179 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2624699 5678521 Clos_2427 Alkaliphilus oremlandii OhILAs ErfK/YbiS/YcfS/YnhG family protein YP_001513955.1 2623935 R 350688 CDS YP_001513956.1 158321449 5676582 complement(2624841..2625644) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY1005 hypothetical protein; ABC transporter 2625644 5676582 Clos_2428 Alkaliphilus oremlandii OhILAs ABC transporter YP_001513956.1 2624841 R 350688 CDS YP_001513957.1 158321450 5676583 complement(2625641..2626675) 1 NC_009922.1 PFAM: transport system permease protein; KEGG: dsy:DSY1004 hypothetical protein; transport system permease 2626675 5676583 Clos_2429 Alkaliphilus oremlandii OhILAs transport system permease YP_001513957.1 2625641 R 350688 CDS YP_001513958.1 158321451 5676584 complement(2626672..2627670) 1 NC_009922.1 PFAM: transport system permease protein; KEGG: dsy:DSY1003 hypothetical protein; transport system permease protein 2627670 5676584 Clos_2430 Alkaliphilus oremlandii OhILAs transport system permease protein YP_001513958.1 2626672 R 350688 CDS YP_001513959.1 158321452 5676585 complement(2627667..2628722) 1 NC_009922.1 PFAM: periplasmic binding protein; KEGG: dsy:DSY1002 hypothetical protein; periplasmic binding protein 2628722 5676585 Clos_2431 Alkaliphilus oremlandii OhILAs periplasmic binding protein YP_001513959.1 2627667 R 350688 CDS YP_001513960.1 158321453 5676586 complement(2629057..2629698) 1 NC_009922.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cdf:CD2573 probable hydrolase; HAD family hydrolase 2629698 5676586 Clos_2432 Alkaliphilus oremlandii OhILAs HAD family hydrolase YP_001513960.1 2629057 R 350688 CDS YP_001513961.1 158321454 5676587 2629828..2630361 1 NC_009922.1 PFAM: phosphoesterase PA-phosphatase related; KEGG: cbo:CBO0350 phosphatase; PA-phosphatase like phosphoesterase 2630361 5676587 Clos_2433 Alkaliphilus oremlandii OhILAs PA-phosphatase like phosphoesterase YP_001513961.1 2629828 D 350688 CDS YP_001513962.1 158321455 5676588 2630716..2631612 1 NC_009922.1 PFAM: extracellular solute-binding protein family 1; KEGG: cbo:CBO1946 extracellular tungstate binding protein; extracellular solute-binding protein 2631612 5676588 Clos_2434 Alkaliphilus oremlandii OhILAs extracellular solute-binding protein YP_001513962.1 2630716 D 350688 CDS YP_001513963.1 158321456 5676589 complement(2631716..2633380) 1 NC_009922.1 catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 2633380 5676589 Clos_2435 Alkaliphilus oremlandii OhILAs hydroxylamine reductase YP_001513963.1 2631716 R 350688 CDS YP_001513964.1 158321457 5676590 complement(2634461..2634946) 1 NC_009922.1 KEGG: mja:MJ0003 hypothetical protein; hypothetical protein 2634946 5676590 Clos_2436 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513964.1 2634461 R 350688 CDS YP_001513965.1 158321458 5676591 complement(2634939..2635514) 1 NC_009922.1 KEGG: cdf:CD3073 hypothetical protein; hypothetical protein 2635514 5676591 Clos_2437 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513965.1 2634939 R 350688 CDS YP_001513966.1 158321459 5677215 complement(2635688..2635987) 1 NC_009922.1 KEGG: cth:Cthe_2499 hypothetical protein; hypothetical protein 2635987 5677215 Clos_2438 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513966.1 2635688 R 350688 CDS YP_001513967.1 158321460 5677216 complement(2635988..2636752) 1 NC_009922.1 PFAM: glycoside hydrolase family 25; KEGG: ssu:SSU05_0524 lyzozyme M1 (1,4-beta-N-acetylmuramidase); glycoside hydrolase family protein 2636752 5677216 Clos_2439 Alkaliphilus oremlandii OhILAs glycoside hydrolase family protein YP_001513967.1 2635988 R 350688 CDS YP_001513968.1 158321461 5677217 complement(2636943..2637176) 1 NC_009922.1 KEGG: cac:CAC0455 hypothetical protein; hypothetical protein 2637176 5677217 Clos_2440 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513968.1 2636943 R 350688 CDS YP_001513969.1 158321462 5677218 complement(2637313..2639289) 1 NC_009922.1 PFAM: Na+/solute symporter; KEGG: cno:NT01CX_0299 sodium:solute symporter family protein; Na+/solute symporter 2639289 5677218 Clos_2441 Alkaliphilus oremlandii OhILAs Na+/solute symporter YP_001513969.1 2637313 R 350688 CDS YP_001513970.1 158321463 5677219 complement(2639370..2640140) 1 NC_009922.1 PFAM: cyclase family protein; KEGG: rha:RHA1_ro03385 possible cyclase; cyclase family protein 2640140 5677219 Clos_2442 Alkaliphilus oremlandii OhILAs cyclase family protein YP_001513970.1 2639370 R 350688 CDS YP_001513971.1 158321464 5677220 complement(2640155..2640973) 1 NC_009922.1 PFAM: protein of unknown function DUF849; KEGG: gtn:GTNG_2707 hypothetical cytosolic protein; hypothetical protein 2640973 5677220 Clos_2443 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513971.1 2640155 R 350688 CDS YP_001513972.1 158321465 5677221 complement(2640999..2642171) 1 NC_009922.1 TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: rpc:RPC_0636 acetyl-CoA C-acetyltransferase; acetyl-CoA acetyltransferase 2642171 5677221 Clos_2444 Alkaliphilus oremlandii OhILAs acetyl-CoA acetyltransferase YP_001513972.1 2640999 R 350688 CDS YP_001513973.1 158321466 5677222 complement(2642408..2643892) 1 NC_009922.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: PAS domain containing protein; AAA ATPase; KEGG: cbo:CBO3196 sigma54-binding transcriptional regulator; PAS modulated sigma54 specific transcriptional regulator 2643892 5677222 Clos_2445 Alkaliphilus oremlandii OhILAs PAS modulated sigma54 specific transcriptional regulator YP_001513973.1 2642408 R 350688 CDS YP_001513974.1 158321467 5677223 complement(2643925..2644758) 1 NC_009922.1 PFAM: DNA polymerase beta domain protein region; KEGG: dsy:DSY4374 hypothetical protein; 3''-adenylyltransferase 2644758 5677223 Clos_2446 Alkaliphilus oremlandii OhILAs 3''-adenylyltransferase YP_001513974.1 2643925 R 350688 CDS YP_001513975.1 158321468 5677224 complement(2645275..2646900) 1 NC_009922.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 2646900 groEL 5677224 groEL Alkaliphilus oremlandii OhILAs chaperonin GroEL YP_001513975.1 2645275 R 350688 CDS YP_001513976.1 158321469 5676782 complement(2646955..2647239) 1 NC_009922.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 2647239 groES 5676782 groES Alkaliphilus oremlandii OhILAs co-chaperonin GroES YP_001513976.1 2646955 R 350688 CDS YP_001513977.1 158321470 5676783 complement(2647452..2648138) 1 NC_009922.1 PFAM: protein of unknown function DUF554; KEGG: pth:PTH_2912 uncharacterized membrane protein; hypothetical protein 2648138 5676783 Clos_2449 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513977.1 2647452 R 350688 CDS YP_001513978.1 158321471 5676784 complement(2648404..2649279) 1 NC_009922.1 PFAM: HhH-GPD family protein; 8-oxoguanine DNA glycosylase domain protein; KEGG: cdf:CD0191 putative DNA glycosylase (DNA repair protein); 8-oxoguanine DNA glycosylase 2649279 5676784 Clos_2450 Alkaliphilus oremlandii OhILAs 8-oxoguanine DNA glycosylase YP_001513978.1 2648404 R 350688 CDS YP_001513979.1 158321472 5676785 complement(2649447..2650778) 1 NC_009922.1 hypothetical protein 2650778 5676785 Clos_2451 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513979.1 2649447 R 350688 CDS YP_001513980.1 158321473 5676786 2651022..2651732 1 NC_009922.1 KEGG: stp:Strop_1632 asparagine synthase (glutamine-hydrolyzing); asparagine synthase 2651732 5676786 Clos_2452 Alkaliphilus oremlandii OhILAs asparagine synthase YP_001513980.1 2651022 D 350688 CDS YP_001513981.1 158321474 5676787 complement(2651816..2653504) 1 NC_009922.1 KEGG: swo:Swol_2039 hypothetical protein; hypothetical protein 2653504 5676787 Clos_2453 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513981.1 2651816 R 350688 CDS YP_001513982.1 158321475 5676788 complement(2653501..2654223) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0848 ABC-type multidrug transport system, ATPase component; ABC transporter 2654223 5676788 Clos_2454 Alkaliphilus oremlandii OhILAs ABC transporter YP_001513982.1 2653501 R 350688 CDS YP_001513983.1 158321476 5676789 complement(2654508..2655626) 1 NC_009922.1 KEGG: sto:ST1120 dihydropyrimidine dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; dihydroorotate dehydrogenase family protein 2655626 5676789 Clos_2455 Alkaliphilus oremlandii OhILAs dihydroorotate dehydrogenase family protein YP_001513983.1 2654508 R 350688 CDS YP_001513984.1 158321477 5676790 complement(2655640..2656671) 1 NC_009922.1 PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: tte:TTE0201 Transcriptional regulator; LacI family transcriptional regulator 2656671 5676790 Clos_2456 Alkaliphilus oremlandii OhILAs LacI family transcriptional regulator YP_001513984.1 2655640 R 350688 CDS YP_001513985.1 158321478 5676791 complement(2656835..2658070) 1 NC_009922.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cbo:CBO2072 cytosine deaminase; N-isopropylammelide isopropylaminohydrolase 2658070 5676791 Clos_2457 Alkaliphilus oremlandii OhILAs N-isopropylammelide isopropylaminohydrolase YP_001513985.1 2656835 R 350688 CDS YP_001513986.1 158321479 5675826 complement(2658064..2659326) 1 NC_009922.1 PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: cbo:CBO2073 cytosine permease; cytosine permease 2659326 codB 5675826 codB Alkaliphilus oremlandii OhILAs cytosine permease YP_001513986.1 2658064 R 350688 CDS YP_001513987.1 158321480 5675827 complement(2659608..2660858) 1 NC_009922.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: cdf:CD0179 NAD-specific glutamate dehydrogenase; Glu/Leu/Phe/Val dehydrogenase 2660858 5675827 Clos_2459 Alkaliphilus oremlandii OhILAs Glu/Leu/Phe/Val dehydrogenase YP_001513987.1 2659608 R 350688 CDS YP_001513988.1 158321481 5675828 complement(2661078..2661896) 1 NC_009922.1 KEGG: cth:Cthe_2070 hypothetical protein; hypothetical protein 2661896 5675828 Clos_2460 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513988.1 2661078 R 350688 CDS YP_001513989.1 158321482 5675829 2662164..2662334 1 NC_009922.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cdf:CD0172A ferredoxin; 4Fe-4S ferredoxin 2662334 5675829 Clos_2461 Alkaliphilus oremlandii OhILAs 4Fe-4S ferredoxin YP_001513989.1 2662164 D 350688 CDS YP_001513990.1 158321483 5675830 2662553..2663284 1 NC_009922.1 hypothetical protein 2663284 5675830 Clos_2462 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513990.1 2662553 D 350688 CDS YP_001513991.1 158321484 5675831 complement(2663312..2663752) 1 NC_009922.1 PFAM: regulatory protein MarR; KEGG: cpr:CPR_1135 transcriptional regulator, MarR family; MarR family transcriptional regulator 2663752 5675831 Clos_2463 Alkaliphilus oremlandii OhILAs MarR family transcriptional regulator YP_001513991.1 2663312 R 350688 CDS YP_001513992.1 158321485 5675832 complement(2663763..2664416) 1 NC_009922.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 2664416 5675832 Clos_2464 Alkaliphilus oremlandii OhILAs redox-sensing transcriptional repressor Rex YP_001513992.1 2663763 R 350688 CDS YP_001513993.1 158321486 5675833 2664765..2666687 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cdf:CD0170 putative ABC transporter, ATP-binding protein; ABC transporter 2666687 5675833 Clos_2465 Alkaliphilus oremlandii OhILAs ABC transporter YP_001513993.1 2664765 D 350688 CDS YP_001513994.1 158321487 5675834 complement(2667003..2667173) 1 NC_009922.1 hypothetical protein 2667173 5675834 Clos_2466 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513994.1 2667003 R 350688 CDS YP_001513995.1 158321488 5675835 complement(2667274..2668305) 1 NC_009922.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 2668305 5675835 Clos_2467 Alkaliphilus oremlandii OhILAs putative DNA-binding/iron metalloprotein/AP endonuclease YP_001513995.1 2667274 R 350688 CDS YP_001513996.1 158321489 5676857 complement(2668322..2668771) 1 NC_009922.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: tte:TTE0537 Acetyltransferases; ribosomal-protein-alanine acetyltransferase 2668771 5676857 Clos_2468 Alkaliphilus oremlandii OhILAs ribosomal-protein-alanine acetyltransferase YP_001513996.1 2668322 R 350688 CDS YP_001513997.1 158321490 5676858 complement(2668778..2669479) 1 NC_009922.1 PFAM: peptidase M22 glycoprotease; KEGG: cth:Cthe_1775 peptidase M22, glycoprotease; peptidase M22 glycoprotease 2669479 5676858 Clos_2469 Alkaliphilus oremlandii OhILAs peptidase M22 glycoprotease YP_001513997.1 2668778 R 350688 CDS YP_001513998.1 158321491 5676859 complement(2669476..2669934) 1 NC_009922.1 PFAM: protein of unknown function UPF0079; KEGG: cdf:CD0149 putative ATP/GTP hydrolase; hypothetical protein 2669934 5676859 Clos_2470 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001513998.1 2669476 R 350688 CDS YP_001513999.1 158321492 5676860 complement(2670127..2671095) 1 NC_009922.1 KEGG: slo:Shew_1972 FMN-binding domain protein; FMN-binding domain-containing protein 2671095 5676860 Clos_2471 Alkaliphilus oremlandii OhILAs FMN-binding domain-containing protein YP_001513999.1 2670127 R 350688 CDS YP_001514000.1 158321493 5676861 complement(2671279..2672394) 1 NC_009922.1 PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: cth:Cthe_1824 two component transcriptional regulator, AraC family; two component AraC family transcriptional regulator 2672394 5676861 Clos_2472 Alkaliphilus oremlandii OhILAs two component AraC family transcriptional regulator YP_001514000.1 2671279 R 350688 CDS YP_001514001.1 158321494 5676862 complement(2672396..2674036) 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: gme:Gmet_3432 histidine kinase; integral membrane sensor signal transduction histidine kinase 2674036 5676862 Clos_2473 Alkaliphilus oremlandii OhILAs integral membrane sensor signal transduction histidine kinase YP_001514001.1 2672396 R 350688 CDS YP_001514002.1 158321495 5676863 complement(2674224..2674838) 1 NC_009922.1 KEGG: tte:TTE0534 hypothetical protein; hypothetical protein 2674838 5676863 Clos_2474 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514002.1 2674224 R 350688 CDS YP_001514003.1 158321496 5676864 complement(2675251..2675736) 1 NC_009922.1 KEGG: dsy:DSY2530 hypothetical protein; hypothetical protein 2675736 5676864 Clos_2475 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514003.1 2675251 R 350688 CDS YP_001514004.1 158321497 5676865 complement(2675777..2676937) 1 NC_009922.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: tte:TTE0530 imidazolonepropionase and related amidohydrolase; amidohydrolase 2676937 5676865 Clos_2476 Alkaliphilus oremlandii OhILAs amidohydrolase YP_001514004.1 2675777 R 350688 CDS YP_001514005.1 158321498 5676866 complement(2677046..2679202) 1 NC_009922.1 PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: cth:Cthe_1955 RNA binding S1; RNA-binding S1 domain-containing protein 2679202 5676866 Clos_2477 Alkaliphilus oremlandii OhILAs RNA-binding S1 domain-containing protein YP_001514005.1 2677046 R 350688 CDS YP_001514006.1 158321499 5677373 complement(2679410..2679895) 1 NC_009922.1 PFAM: flagellar protein FliS; KEGG: mta:Moth_0766 flagellar protein FliS; flagellar protein FliS 2679895 5677373 Clos_2478 Alkaliphilus oremlandii OhILAs flagellar protein FliS YP_001514006.1 2679410 R 350688 CDS YP_001514007.1 158321500 5677374 complement(2679912..2681528) 1 NC_009922.1 PFAM: flagellin domain protein; KEGG: gka:GK3142 flagellar protein; flagellin domain-containing protein 2681528 5677374 Clos_2479 Alkaliphilus oremlandii OhILAs flagellin domain-containing protein YP_001514007.1 2679912 R 350688 CDS YP_001514008.1 158321501 5677375 complement(2681642..2681938) 1 NC_009922.1 KEGG: cth:Cthe_0759 flagellar biosynthesis; flagellar biosynthesis protein 2681938 5677375 Clos_2480 Alkaliphilus oremlandii OhILAs flagellar biosynthesis protein YP_001514008.1 2681642 R 350688 CDS YP_001514009.1 158321502 5677376 complement(2681955..2684618) 1 NC_009922.1 KEGG: cth:Cthe_0760 hypothetical protein; hypothetical protein 2684618 5677376 Clos_2481 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514009.1 2681955 R 350688 CDS YP_001514010.1 158321503 5677377 2684836..2685282 1 NC_009922.1 PFAM: protein of unknown function DUF327; KEGG: cth:Cthe_2106 protein of unknown function DUF327; hypothetical protein 2685282 5677377 Clos_2482 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514010.1 2684836 D 350688 CDS YP_001514011.1 158321504 5677378 complement(2685353..2687728) 1 NC_009922.1 PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bld:BLi03297 close homolog to McpA methyl-accepting chemotaxis protein; RBL01413; methyl-accepting chemotaxis sensory transducer 2687728 5677378 Clos_2483 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer YP_001514011.1 2685353 R 350688 CDS YP_001514012.1 158321505 5677379 complement(2687858..2688880) 1 NC_009922.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: cdf:CD0144 peptide chain release factor 2; peptide chain release factor 2 2688880 5677379 Clos_2484 Alkaliphilus oremlandii OhILAs peptide chain release factor 2 YP_001514012.1 2687858 R 350688 CDS YP_001514013.1 158321506 5677380 complement(2688981..2691653) 1 NC_009922.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 2691653 5677380 Clos_2485 Alkaliphilus oremlandii OhILAs preprotein translocase subunit SecA YP_001514013.1 2688981 R 350688 CDS YP_001514014.1 158321507 5677381 complement(2691924..2692529) 1 NC_009922.1 KEGG: tte:TTE0519 hypothetical protein; hypothetical protein 2692529 5677381 Clos_2486 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514014.1 2691924 R 350688 CDS YP_001514015.1 158321508 5677382 complement(2692691..2693236) 1 NC_009922.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: ctc:CTC00325 SSU ribosomal protein S30P; sigma 54 modulation protein/ribosomal protein S30EA 2693236 5677382 Clos_2487 Alkaliphilus oremlandii OhILAs sigma 54 modulation protein/ribosomal protein S30EA YP_001514015.1 2692691 R 350688 CDS YP_001514016.1 158321509 5676431 complement(2694108..2694590) 1 NC_009922.1 PFAM: FlgN family protein; KEGG: cth:Cthe_2216 hypothetical protein; FlgN family protein 2694590 5676431 Clos_2488 Alkaliphilus oremlandii OhILAs FlgN family protein YP_001514016.1 2694108 R 350688 CDS YP_001514017.1 158321510 5676432 complement(2694599..2694979) 1 NC_009922.1 PFAM: flagellar protein FliS; KEGG: tte:TTE0506 Flagellar protein; flagellar protein FliS 2694979 5676432 Clos_2489 Alkaliphilus oremlandii OhILAs flagellar protein FliS YP_001514017.1 2694599 R 350688 CDS YP_001514018.1 158321511 5676433 complement(2695052..2697040) 1 NC_009922.1 PFAM: flagellar hook-associated protein 2 domain protein; flagellar hook-associated 2 domain protein; flagellin hook IN repeat protein; KEGG: bcl:ABC3074 flagellar hook-associated protein FliD; flagellar hook-associated 2 domain-containing protein 2697040 5676433 Clos_2490 Alkaliphilus oremlandii OhILAs flagellar hook-associated 2 domain-containing protein YP_001514018.1 2695052 R 350688 CDS YP_001514019.1 158321512 5676434 complement(2697078..2697437) 1 NC_009922.1 PFAM: flagellar protein FlaG protein; KEGG: cth:Cthe_2219 flagellar protein FlaG protein; flagellar protein FlaG protein 2697437 5676434 Clos_2491 Alkaliphilus oremlandii OhILAs flagellar protein FlaG protein YP_001514019.1 2697078 R 350688 CDS YP_001514020.1 158321513 5676435 2697597..2698451 1 NC_009922.1 PFAM: aminotransferase class IV; KEGG: cac:CAC2226 enzyme of IlvE/PabC family (branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase); class IV aminotransferase 2698451 5676435 Clos_2492 Alkaliphilus oremlandii OhILAs class IV aminotransferase YP_001514020.1 2697597 D 350688 CDS YP_001514021.1 158321514 5676436 complement(2698502..2699785) 1 NC_009922.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC02521 NADH dehydrogenase, similar to nitrite reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2699785 5676436 Clos_2493 Alkaliphilus oremlandii OhILAs FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_001514021.1 2698502 R 350688 CDS YP_001514022.1 158321515 5676437 complement(2699914..2700138) 1 NC_009922.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 2700138 5676437 Clos_2494 Alkaliphilus oremlandii OhILAs carbon storage regulator YP_001514022.1 2699914 R 350688 CDS YP_001514023.1 158321516 5676438 complement(2700138..2700617) 1 NC_009922.1 binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 2700617 5676438 Clos_2495 Alkaliphilus oremlandii OhILAs flagellar assembly protein FliW YP_001514023.1 2700138 R 350688 CDS YP_001514024.1 158321517 5676439 2700846..2702273 1 NC_009922.1 KEGG: bsu:BG10723 transcriptional activator of arginine utilization operons (NtrC family); TIGRFAM: PAS sensor protein; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; PAS modulated sigma54 specific transcriptional regulator 2702273 5676439 Clos_2496 Alkaliphilus oremlandii OhILAs PAS modulated sigma54 specific transcriptional regulator YP_001514024.1 2700846 D 350688 CDS YP_001514025.1 158321518 5676440 2702562..2703965 1 NC_009922.1 PFAM: Na+/H+ antiporter NhaC; KEGG: cdf:CD0449 Na+/H+ antiporter; Na+/H+ antiporter NhaC 2703965 5676440 Clos_2497 Alkaliphilus oremlandii OhILAs Na+/H+ antiporter NhaC YP_001514025.1 2702562 D 350688 CDS YP_001514026.1 158321519 5675937 complement(2704089..2704811) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: drm:Dred_2931 ABC transporter related; ABC transporter 2704811 5675937 Clos_2498 Alkaliphilus oremlandii OhILAs ABC transporter YP_001514026.1 2704089 R 350688 CDS YP_001514027.1 158321520 5675938 complement(2704804..2705607) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: drm:Dred_2932 ABC transporter related; ABC transporter 2705607 5675938 Clos_2499 Alkaliphilus oremlandii OhILAs ABC transporter YP_001514027.1 2704804 R 350688 CDS YP_001514028.1 158321521 5675939 complement(2705607..2706662) 1 NC_009922.1 PFAM: inner-membrane translocator; KEGG: bhe:BH08270 high-affinity branched-chain amino acid transporter, permease protein; inner-membrane translocator 2706662 5675939 Clos_2500 Alkaliphilus oremlandii OhILAs inner-membrane translocator YP_001514028.1 2705607 R 350688 CDS YP_001514029.1 158321522 5675940 complement(2706666..2707541) 1 NC_009922.1 PFAM: inner-membrane translocator; KEGG: drm:Dred_2934 inner-membrane translocator; inner-membrane translocator 2707541 5675940 Clos_2501 Alkaliphilus oremlandii OhILAs inner-membrane translocator YP_001514029.1 2706666 R 350688 CDS YP_001514030.1 158321523 5675941 complement(2707692..2708879) 1 NC_009922.1 PFAM: Extracellular ligand-binding receptor; KEGG: drm:Dred_2935 extracellular ligand-binding receptor; extracellular ligand-binding receptor 2708879 5675941 Clos_2502 Alkaliphilus oremlandii OhILAs extracellular ligand-binding receptor YP_001514030.1 2707692 R 350688 CDS YP_001514031.1 158321524 5675942 2709168..2709758 1 NC_009922.1 KEGG: gsu:GSU1025 hypothetical protein; hypothetical protein 2709758 5675942 Clos_2503 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514031.1 2709168 D 350688 CDS YP_001514032.1 158321525 5675943 complement(2709839..2710687) 1 NC_009922.1 TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; KEGG: ctc:CTC01693 hypothetical protein; metal dependent phosphohydrolase 2710687 5675943 Clos_2504 Alkaliphilus oremlandii OhILAs metal dependent phosphohydrolase YP_001514032.1 2709839 R 350688 CDS YP_001514033.1 158321526 5675944 2710891..2711202 1 NC_009922.1 KEGG: tte:TTE0491 flagellar protein; hypothetical protein 2711202 5675944 Clos_2505 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514033.1 2710891 D 350688 CDS YP_001514034.1 158321527 5675945 complement(2711313..2711699) 1 NC_009922.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cpr:CPR_0440 lactoylglutathione lyase; glyoxalase/bleomycin resistance protein/dioxygenase 2711699 5675945 Clos_2506 Alkaliphilus oremlandii OhILAs glyoxalase/bleomycin resistance protein/dioxygenase YP_001514034.1 2711313 R 350688 CDS YP_001514035.1 158321528 5676231 complement(2712243..2713484) 1 NC_009922.1 KEGG: cpe:CPE0799 hypothetical protein; hypothetical protein 2713484 5676231 Clos_2508 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514035.1 2712243 R 350688 CDS YP_001514036.1 158321529 5676232 complement(2713536..2714510) 1 NC_009922.1 KEGG: cno:NT01CX_1890 glycosyltransferase; glycosyltransferase 2714510 5676232 Clos_2509 Alkaliphilus oremlandii OhILAs glycosyltransferase YP_001514036.1 2713536 R 350688 CDS YP_001514037.1 158321530 5676233 complement(2714507..2715523) 1 NC_009922.1 PFAM: N-acetylneuraminic acid synthase domain; SAF domain protein; KEGG: cno:NT01CX_1891 sialic acid synthase; N-acylneuraminate-9-phosphate synthase 2715523 5676233 Clos_2510 Alkaliphilus oremlandii OhILAs N-acylneuraminate-9-phosphate synthase YP_001514037.1 2714507 R 350688 CDS YP_001514038.1 158321531 5676234 complement(2715546..2715992) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cno:NT01CX_1889 hypothetical protein; N-acetyltransferase GCN5 2715992 5676234 Clos_2511 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001514038.1 2715546 R 350688 CDS YP_001514039.1 158321532 5676235 complement(2716052..2716603) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gfo:GFO_2021 GNAT family acetyltransferase-possibly polyamine acetyltransferase; N-acetyltransferase GCN5 2716603 5676235 Clos_2512 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001514039.1 2716052 R 350688 CDS YP_001514040.1 158321533 5676236 complement(2716693..2717439) 1 NC_009922.1 PFAM: acylneuraminate cytidylyltransferase; KEGG: cno:NT01CX_1888 spore coat polysaccharide biosynthesis protein SpsF; acylneuraminate cytidylyltransferase 2717439 5676236 Clos_2513 Alkaliphilus oremlandii OhILAs acylneuraminate cytidylyltransferase YP_001514040.1 2716693 R 350688 CDS YP_001514041.1 158321534 5676237 complement(2717451..2718716) 1 NC_009922.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cth:Cthe_2221 DegT/DnrJ/EryC1/StrS aminotransferase; glutamine--scyllo-inositol transaminase 2718716 5676237 Clos_2514 Alkaliphilus oremlandii OhILAs glutamine--scyllo-inositol transaminase YP_001514041.1 2717451 R 350688 CDS YP_001514042.1 158321535 5676238 complement(2718734..2719789) 1 NC_009922.1 PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ctc:CTC01712 UDP-4-dehydro-6-deoxy-2-acetamido-D-glucose 4-reductase; polysaccharide biosynthesis protein CapD 2719789 5676238 Clos_2515 Alkaliphilus oremlandii OhILAs polysaccharide biosynthesis protein CapD YP_001514042.1 2718734 R 350688 CDS YP_001514043.1 158321536 5676239 complement(2720185..2720781) 1 NC_009922.1 KEGG: gka:GK3130 hypothetical protein; hypothetical protein 2720781 5676239 Clos_2516 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514043.1 2720185 R 350688 CDS YP_001514044.1 158321537 5676240 complement(2721343..2723160) 1 NC_009922.1 PFAM: protein of unknown function DUF115; KEGG: cth:Cthe_2235 protein of unknown function DUF115; hypothetical protein 2723160 5676240 Clos_2517 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514044.1 2721343 R 350688 CDS YP_001514045.1 158321538 5677781 complement(2723423..2724235) 1 NC_009922.1 PFAM: flagellin domain protein; KEGG: cth:Cthe_2237 flagellin-like protein; flagellin domain-containing protein 2724235 5677781 Clos_2518 Alkaliphilus oremlandii OhILAs flagellin domain-containing protein YP_001514045.1 2723423 R 350688 CDS YP_001514046.1 158321539 5677782 complement(2724472..2726475) 1 NC_009922.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: cbo:CBO0693 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 2726475 5677782 Clos_2519 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer with Cache sensor YP_001514046.1 2724472 R 350688 CDS YP_001514047.1 158321540 5677783 complement(2726589..2727905) 1 NC_009922.1 TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: bha:BH3620 flagellar hook-associated protein 3 (HAP3); flagellar hook-associated protein 3 2727905 5677783 Clos_2520 Alkaliphilus oremlandii OhILAs flagellar hook-associated protein 3 YP_001514047.1 2726589 R 350688 CDS YP_001514048.1 158321541 5677784 complement(2727917..2729485) 1 NC_009922.1 TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_2243 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK 2729485 5677784 Clos_2521 Alkaliphilus oremlandii OhILAs flagellar hook-associated protein FlgK YP_001514048.1 2727917 R 350688 CDS YP_001514049.1 158321542 5677785 complement(2729502..2729996) 1 NC_009922.1 KEGG: cth:Cthe_2245 hypothetical protein; hypothetical protein 2729996 5677785 Clos_2522 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514049.1 2729502 R 350688 CDS YP_001514050.1 158321543 5677786 complement(2730023..2730316) 1 NC_009922.1 KEGG: cth:Cthe_2246 anti-sigma-28 factor, FlgM; anti-sigma-28 factor FlgM 2730316 5677786 Clos_2523 Alkaliphilus oremlandii OhILAs anti-sigma-28 factor FlgM YP_001514050.1 2730023 R 350688 CDS YP_001514051.1 158321544 5677787 complement(2730387..2730812) 1 NC_009922.1 KEGG: csc:Csac_1661 hypothetical protein; hypothetical protein 2730812 5677787 Clos_2524 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514051.1 2730387 R 350688 CDS YP_001514052.1 158321545 5677788 complement(2730833..2731519) 1 NC_009922.1 KEGG: ppd:Ppro_2731 competence protein F, putative; competence protein F 2731519 5677788 Clos_2525 Alkaliphilus oremlandii OhILAs competence protein F YP_001514052.1 2730833 R 350688 CDS YP_001514053.1 158321546 5677789 complement(2731601..2733847) 1 NC_009922.1 KEGG: tte:TTE0489 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; TIGRFAM: helicase, RecD/TraA family; SMART: Helix-hairpin-helix DNA-binding class 1; AAA ATPase; recombinase D 2733847 5677789 Clos_2526 Alkaliphilus oremlandii OhILAs recombinase D YP_001514053.1 2731601 R 350688 CDS YP_001514054.1 158321547 5677790 complement(2733885..2734049) 1 NC_009922.1 KEGG: cno:NT01CX_0746 hypothetical protein; hypothetical protein 2734049 5677790 Clos_2527 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514054.1 2733885 R 350688 CDS YP_001514055.1 158321548 5678124 complement(2734230..2734445) 1 NC_009922.1 KEGG: drm:Dred_3084 hypothetical protein; hypothetical protein 2734445 5678124 Clos_2528 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514055.1 2734230 R 350688 CDS YP_001514056.1 158321549 5678125 complement(2734486..2734707) 1 NC_009922.1 PFAM: protein of unknown function DUF1659; hypothetical protein 2734707 5678125 Clos_2529 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514056.1 2734486 R 350688 CDS YP_001514057.1 158321550 5678126 complement(2734759..2735331) 1 NC_009922.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ban:BA0093 RNA polymerase sigma-30 factor; ECF subfamily RNA polymerase sigma-24 factor 2735331 5678126 Clos_2530 Alkaliphilus oremlandii OhILAs ECF subfamily RNA polymerase sigma-24 factor YP_001514057.1 2734759 R 350688 CDS YP_001514058.1 158321551 5678127 complement(2735497..2736684) 1 NC_009922.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 2736684 5678127 Clos_2531 Alkaliphilus oremlandii OhILAs S-adenosylmethionine synthetase YP_001514058.1 2735497 R 350688 CDS YP_001514059.1 158321552 5678128 complement(2737139..2737606) 1 NC_009922.1 PFAM: putative small multi-drug export; KEGG: bha:BH1234 small multidrug export related protein; putative small multi-drug export 2737606 5678128 Clos_2532 Alkaliphilus oremlandii OhILAs putative small multi-drug export YP_001514059.1 2737139 R 350688 CDS YP_001514060.1 158321553 5678129 complement(2737763..2738311) 1 NC_009922.1 KEGG: cth:Cthe_1229 spore germination protein-like protein; hypothetical protein 2738311 5678129 Clos_2533 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514060.1 2737763 R 350688 CDS YP_001514061.1 158321554 5678130 complement(2738460..2738891) 1 NC_009922.1 PFAM: protein of unknown function DUF1292; KEGG: cno:NT01CX_1855 hypothetical protein; hypothetical protein 2738891 5678130 Clos_2534 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514061.1 2738460 R 350688 CDS YP_001514062.1 158321555 5678131 complement(2738955..2740469) 1 NC_009922.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: drm:Dred_1346 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); diguanylate cyclase/phosphodiesterase 2740469 5678131 Clos_2535 Alkaliphilus oremlandii OhILAs diguanylate cyclase/phosphodiesterase YP_001514062.1 2738955 R 350688 CDS YP_001514063.1 158321556 5678132 complement(2740543..2740977) 1 NC_009922.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase 2740977 fabZ 5678132 fabZ Alkaliphilus oremlandii OhILAs (3R)-hydroxymyristoyl-ACP dehydratase YP_001514063.1 2740543 R 350688 CDS YP_001514064.1 158321557 5678133 complement(2741311..2742357) 1 NC_009922.1 PFAM: extracellular solute-binding protein family 1; KEGG: cno:NT01CX_1229 bacterial extracellular solute-binding protein, putative; extracellular solute-binding protein 2742357 5678133 Clos_2537 Alkaliphilus oremlandii OhILAs extracellular solute-binding protein YP_001514064.1 2741311 R 350688 CDS YP_001514065.1 158321558 5677141 complement(2742360..2743142) 1 NC_009922.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cno:NT01CX_1228 spermidine/putrescine ABC transporter, permease protein 2; ornithine carbamoyltransferase 2743142 5677141 Clos_2538 Alkaliphilus oremlandii OhILAs ornithine carbamoyltransferase YP_001514065.1 2742360 R 350688 CDS YP_001514066.1 158321559 5677142 complement(2743136..2743954) 1 NC_009922.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cno:NT01CX_1227 ABC-type spermidine/putrescine transport system, permease protein 1; binding-protein-dependent transport system inner membrane protein 2743954 5677142 Clos_2539 Alkaliphilus oremlandii OhILAs binding-protein-dependent transport system inner membrane protein YP_001514066.1 2743136 R 350688 CDS YP_001514067.1 158321560 5677143 complement(2743956..2744999) 1 NC_009922.1 KEGG: cno:NT01CX_1226 spermidine/putrescine ABC transporter ATP-binding subunit; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase 2744999 5677143 Clos_2540 Alkaliphilus oremlandii OhILAs spermidine/putrescine ABC transporter ATPase YP_001514067.1 2743956 R 350688 CDS YP_001514068.1 158321561 5677144 complement(2745246..2745755) 1 NC_009922.1 KEGG: dsy:DSY1696 hypothetical protein; hypothetical protein 2745755 5677144 Clos_2541 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514068.1 2745246 R 350688 CDS YP_001514069.1 158321562 5677145 complement(2745822..2746499) 1 NC_009922.1 PFAM: MgtC/SapB transporter; KEGG: cth:Cthe_1919 MgtC/SapB transporter; MgtC/SapB transporter 2746499 5677145 Clos_2542 Alkaliphilus oremlandii OhILAs MgtC/SapB transporter YP_001514069.1 2745822 R 350688 CDS YP_001514070.1 158321563 5677146 complement(2746677..2748053) 1 NC_009922.1 TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: cbo:CBO2207 gluconate permease; gluconate transporter 2748053 5677146 Clos_2543 Alkaliphilus oremlandii OhILAs gluconate transporter YP_001514070.1 2746677 R 350688 CDS YP_001514071.1 158321564 5677147 complement(2748089..2749087) 1 NC_009922.1 catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase 2749087 pdxA 5677147 pdxA Alkaliphilus oremlandii OhILAs 4-hydroxythreonine-4-phosphate dehydrogenase YP_001514071.1 2748089 R 350688 CDS YP_001514072.1 158321565 5677148 complement(2749127..2750449) 1 NC_009922.1 PFAM: type III effector Hrp-dependent outers; KEGG: cno:NT01CX_0636 hypothetical protein; Hrp-dependent type III effector protein 2750449 5677148 Clos_2545 Alkaliphilus oremlandii OhILAs Hrp-dependent type III effector protein YP_001514072.1 2749127 R 350688 CDS YP_001514073.1 158321566 5677149 complement(2750469..2751230) 1 NC_009922.1 PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: plu:plu2511 hypothetical protein; DeoR family transcriptional regulator 2751230 5677149 Clos_2546 Alkaliphilus oremlandii OhILAs DeoR family transcriptional regulator YP_001514073.1 2750469 R 350688 CDS YP_001514074.1 158321567 5677150 2751486..2752082 1 NC_009922.1 PFAM: Peptidoglycan-binding domain 1 protein; Peptidoglycan-binding LysM; KEGG: tte:TTE2219 LysM-repeat proteins and domains; peptidoglycan binding domain-containing protein 2752082 5677150 Clos_2547 Alkaliphilus oremlandii OhILAs peptidoglycan binding domain-containing protein YP_001514074.1 2751486 D 350688 CDS YP_001514075.1 158321568 5678426 complement(2752164..2752526) 1 NC_009922.1 KEGG: cth:Cthe_2622 hypothetical protein; hypothetical protein 2752526 5678426 Clos_2548 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514075.1 2752164 R 350688 CDS YP_001514076.1 158321569 5678427 complement(2752545..2753339) 1 NC_009922.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: tte:TTE0173 Flagellar basal body and hook proteins; hypothetical protein 2753339 5678427 Clos_2549 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514076.1 2752545 R 350688 CDS YP_001514077.1 158321570 5678428 complement(2753353..2754426) 1 NC_009922.1 PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: tte:TTE0172 Flagellar basal body and hook proteins; flagellar basal body rod protein 2754426 5678428 Clos_2550 Alkaliphilus oremlandii OhILAs flagellar basal body rod protein YP_001514077.1 2753353 R 350688 CDS YP_001514078.1 158321571 5678429 complement(2754508..2755530) 1 NC_009922.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: cth:Cthe_2619 cell shape determining protein, MreB/Mrl family; rod shape-determining protein Mbl 2755530 5678429 Clos_2551 Alkaliphilus oremlandii OhILAs rod shape-determining protein Mbl YP_001514078.1 2754508 R 350688 CDS YP_001514079.1 158321572 5678430 complement(2755873..2756130) 1 NC_009922.1 TIGRFAM: Sporulation stage III transcriptional regulator SpoIIID; KEGG: cbo:CBO0162 stage III sporulation protein D; sporulation stage III transcriptional regulator SpoIIID 2756130 5678430 Clos_2552 Alkaliphilus oremlandii OhILAs sporulation stage III transcriptional regulator SpoIIID YP_001514079.1 2755873 R 350688 CDS YP_001514080.1 158321573 5678431 complement(2756279..2757166) 1 NC_009922.1 PFAM: peptidase M23B; KEGG: cth:Cthe_2617 peptidase M23B; peptidase M23B 2757166 5678431 Clos_2553 Alkaliphilus oremlandii OhILAs peptidase M23B YP_001514080.1 2756279 R 350688 CDS YP_001514081.1 158321574 5678432 complement(2757284..2758291) 1 NC_009922.1 TIGRFAM: SpoIID/LytB domain; Sporulation stage II protein D firmicutes; PFAM: Stage II sporulation D domain protein; KEGG: cdf:CD0124 stage II sporulation protein D; sporulation stage II protein D 2758291 5678432 Clos_2554 Alkaliphilus oremlandii OhILAs sporulation stage II protein D YP_001514081.1 2757284 R 350688 CDS YP_001514082.1 158321575 5678433 complement(2758354..2759658) 1 NC_009922.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2759658 5678433 Clos_2555 Alkaliphilus oremlandii OhILAs UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001514082.1 2758354 R 350688 CDS YP_001514083.1 158321576 5678434 complement(2759813..2760643) 1 NC_009922.1 KEGG: tte:TTE0157 hypothetical protein; hypothetical protein 2760643 5678434 Clos_2556 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514083.1 2759813 R 350688 CDS YP_001514084.1 158321577 5678435 complement(2760875..2761402) 1 NC_009922.1 PFAM: protein of unknown function DUF1694; KEGG: drm:Dred_0426 protein of unknown function DUF1694; hypothetical protein 2761402 5678435 Clos_2557 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514084.1 2760875 R 350688 CDS YP_001514085.1 158321578 5678446 2761526..2762041 1 NC_009922.1 KEGG: dsy:DSY0850 hypothetical protein; hypothetical protein 2762041 5678446 Clos_2558 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514085.1 2761526 D 350688 CDS YP_001514086.1 158321579 5678447 complement(2762128..2762532) 1 NC_009922.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: bsu:BG10822 ATP synthase epsilon chain; ATP synthase F1 subunit epsilon 2762532 5678447 Clos_2559 Alkaliphilus oremlandii OhILAs ATP synthase F1 subunit epsilon YP_001514086.1 2762128 R 350688 CDS YP_001514087.1 158321580 5678448 complement(2762541..2763935) 1 NC_009922.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 2763935 5678448 Clos_2560 Alkaliphilus oremlandii OhILAs F0F1 ATP synthase subunit beta YP_001514087.1 2762541 R 350688 CDS YP_001514088.1 158321581 5678449 complement(2763957..2764826) 1 NC_009922.1 KEGG: cdf:CD3469 ATP synthase subunit gamma; TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; ATP synthase F1 subunit gamma 2764826 5678449 Clos_2561 Alkaliphilus oremlandii OhILAs ATP synthase F1 subunit gamma YP_001514088.1 2763957 R 350688 CDS YP_001514089.1 158321582 5678450 complement(2764862..2766379) 1 NC_009922.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 2766379 5678450 Clos_2562 Alkaliphilus oremlandii OhILAs F0F1 ATP synthase subunit alpha YP_001514089.1 2764862 R 350688 CDS YP_001514090.1 158321583 5678451 complement(2766397..2766939) 1 NC_009922.1 TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: cdf:CD3471 ATP synthase subunit delta; ATP synthase F1 subunit delta 2766939 5678451 Clos_2563 Alkaliphilus oremlandii OhILAs ATP synthase F1 subunit delta YP_001514090.1 2766397 R 350688 CDS YP_001514091.1 158321584 5678452 complement(2766927..2767430) 1 NC_009922.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: cdf:CD3472 ATP synthase B chain; ATP synthase F0 subunit B 2767430 5678452 Clos_2564 Alkaliphilus oremlandii OhILAs ATP synthase F0 subunit B YP_001514091.1 2766927 R 350688 CDS YP_001514092.1 158321585 5678453 complement(2767488..2767754) 1 NC_009922.1 produces ATP from ADP in the presence of a proton gradient across the membrane; subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 2767754 5678453 Clos_2565 Alkaliphilus oremlandii OhILAs F0F1 ATP synthase subunit C YP_001514092.1 2767488 R 350688 CDS YP_001514093.1 158321586 5678454 complement(2767803..2768498) 1 NC_009922.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: cpf:CPF_2458 ATP synthase F0, A subunit; ATP synthase F0 subunit A 2768498 5678454 Clos_2566 Alkaliphilus oremlandii OhILAs ATP synthase F0 subunit A YP_001514093.1 2767803 R 350688 CDS YP_001514094.1 158321587 5678455 complement(2768499..2768906) 1 NC_009922.1 KEGG: cdf:CD3475 ATP synthase protein I; ATP synthase protein I 2768906 5678455 Clos_2567 Alkaliphilus oremlandii OhILAs ATP synthase protein I YP_001514094.1 2768499 R 350688 CDS YP_001514095.1 158321588 5676819 complement(2768911..2769138) 1 NC_009922.1 KEGG: gme:Gmet_3357 hypothetical protein; hypothetical protein 2769138 5676819 Clos_2568 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514095.1 2768911 R 350688 CDS YP_001514096.1 158321589 5676820 complement(2769278..2770402) 1 NC_009922.1 PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: ctc:CTC00311 UDP-N-acetylglucosamine 2-epimerase; UDP-N-acetylglucosamine 2-epimerase 2770402 5676820 Clos_2569 Alkaliphilus oremlandii OhILAs UDP-N-acetylglucosamine 2-epimerase YP_001514096.1 2769278 R 350688 CDS YP_001514097.1 158321590 5676821 complement(2770652..2771737) 1 NC_009922.1 PFAM: glycosyl transferase family 4; KEGG: tte:TTE0154 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; glycosyl transferase family protein 2771737 5676821 Clos_2570 Alkaliphilus oremlandii OhILAs glycosyl transferase family protein YP_001514097.1 2770652 R 350688 CDS YP_001514098.1 158321591 5676822 complement(2771828..2772265) 1 NC_009922.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cth:Cthe_2599 CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase 2772265 5676822 Clos_2571 Alkaliphilus oremlandii OhILAs zinc-binding CMP/dCMP deaminase YP_001514098.1 2771828 R 350688 CDS YP_001514099.1 158321592 5676823 complement(2772582..2773211) 1 NC_009922.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 2773211 upp 5676823 upp Alkaliphilus oremlandii OhILAs uracil phosphoribosyltransferase YP_001514099.1 2772582 R 350688 CDS YP_001514100.1 158321593 5676824 complement(2773255..2773704) 1 NC_009922.1 KEGG: cpr:CPR_2173 ribose 5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; RpiB/LacA/LacB family sugar-phosphate isomerase 2773704 5676824 Clos_2573 Alkaliphilus oremlandii OhILAs RpiB/LacA/LacB family sugar-phosphate isomerase YP_001514100.1 2773255 R 350688 CDS YP_001514101.1 158321594 5676825 complement(2773784..2774308) 1 NC_009922.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: pth:PTH_2826 protein-tyrosine-phosphatase; protein tyrosine phosphatase 2774308 5676825 Clos_2574 Alkaliphilus oremlandii OhILAs protein tyrosine phosphatase YP_001514101.1 2773784 R 350688 CDS YP_001514102.1 158321595 5676826 complement(2774295..2775344) 1 NC_009922.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC domain; KEGG: cth:Cthe_2595 SUA5/YciO/YrdC/YwlC family protein; Sua5/YciO/YrdC/YwlC family protein 2775344 5676826 Clos_2575 Alkaliphilus oremlandii OhILAs Sua5/YciO/YrdC/YwlC family protein YP_001514102.1 2774295 R 350688 CDS YP_001514103.1 158321596 5676827 complement(2775364..2776764) 1 NC_009922.1 PFAM: penicillin-binding protein transpeptidase; KEGG: cth:Cthe_3047 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase 2776764 5676827 Clos_2576 Alkaliphilus oremlandii OhILAs peptidoglycan glycosyltransferase YP_001514103.1 2775364 R 350688 CDS YP_001514104.1 158321597 5676828 complement(2776754..2778106) 1 NC_009922.1 PFAM: cell cycle protein; KEGG: cth:Cthe_3046 cell cycle protein; cell cycle protein 2778106 5676828 Clos_2577 Alkaliphilus oremlandii OhILAs cell cycle protein YP_001514104.1 2776754 R 350688 CDS YP_001514105.1 158321598 5676654 complement(2778103..2778549) 1 NC_009922.1 PFAM: Forkhead-associated protein; KEGG: cth:Cthe_3045 FHA domain containing protein; FHA domain-containing protein 2778549 5676654 Clos_2578 Alkaliphilus oremlandii OhILAs FHA domain-containing protein YP_001514105.1 2778103 R 350688 CDS YP_001514106.1 158321599 5676655 complement(2778641..2779378) 1 NC_009922.1 PFAM: zinc/iron permease; KEGG: tte:TTE0144 predicted divalent heavy-metal cations transporter; zinc/iron permease 2779378 5676655 Clos_2579 Alkaliphilus oremlandii OhILAs zinc/iron permease YP_001514106.1 2778641 R 350688 CDS YP_001514107.1 158321600 5676656 complement(2779486..2780559) 1 NC_009922.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 2780559 prfA 5676656 prfA Alkaliphilus oremlandii OhILAs peptide chain release factor 1 YP_001514107.1 2779486 R 350688 CDS YP_001514108.1 158321601 5676657 complement(2780621..2781490) 1 NC_009922.1 TIGRFAM: modification methylase, HemK family; PFAM: O-methyltransferase family 3; methyltransferase small; KEGG: cdf:CD3485 protein methyltransferase; HemK family modification methylase 2781490 5676657 Clos_2581 Alkaliphilus oremlandii OhILAs HemK family modification methylase YP_001514108.1 2780621 R 350688 CDS YP_001514109.1 158321602 5676658 complement(2781484..2782437) 1 NC_009922.1 PFAM: protein of unknown function DUF1385; KEGG: tte:TTE0141 hypothetical protein; hypothetical protein 2782437 5676658 Clos_2582 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514109.1 2781484 R 350688 CDS YP_001514110.1 158321603 5676659 complement(2782787..2783953) 1 NC_009922.1 PFAM: ABC-2 type transporter; KEGG: oih:OB1073 hypothetical conserved protein; ABC-2 type transporter 2783953 5676659 Clos_2583 Alkaliphilus oremlandii OhILAs ABC-2 type transporter YP_001514110.1 2782787 R 350688 CDS YP_001514111.1 158321604 5676660 complement(2783950..2785284) 1 NC_009922.1 PFAM: ABC-2 type transporter; KEGG: oih:OB1072 putative ABC-2 type transport system permease protein; ABC-2 type transporter 2785284 5676660 Clos_2584 Alkaliphilus oremlandii OhILAs ABC-2 type transporter YP_001514111.1 2783950 R 350688 CDS YP_001514112.1 158321605 5676661 complement(2785296..2786042) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH1054 putative ABC-2 type transport system ATP-binding protein; ABC transporter 2786042 5676661 Clos_2585 Alkaliphilus oremlandii OhILAs ABC transporter YP_001514112.1 2785296 R 350688 CDS YP_001514113.1 158321606 5676662 complement(2786196..2786780) 1 NC_009922.1 KEGG: bcz:BCZK3023 response regulator; hypothetical protein 2786780 5676662 Clos_2586 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514113.1 2786196 R 350688 CDS YP_001514114.1 158321607 5676663 complement(2787037..2789445) 1 NC_009922.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 2789445 leuS 5676663 leuS Alkaliphilus oremlandii OhILAs leucyl-tRNA synthetase YP_001514114.1 2787037 R 350688 CDS YP_001514115.1 158321608 5677262 complement(2789823..2790590) 1 NC_009922.1 PFAM: protein of unknown function DUF368; KEGG: tde:TDE2250 hypothetical protein; hypothetical protein 2790590 5677262 Clos_2588 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514115.1 2789823 R 350688 CDS YP_001514116.1 158321609 5677263 complement(2791311..2791898) 1 NC_009922.1 PFAM: thymidine kinase; KEGG: tte:TTE0140 Thymidine kinase; thymidine kinase 2791898 5677263 Clos_2589 Alkaliphilus oremlandii OhILAs thymidine kinase YP_001514116.1 2791311 R 350688 CDS YP_001514117.1 158321610 5677264 complement(2792175..2792372) 1 NC_009922.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 2792372 rpmE 5677264 rpmE Alkaliphilus oremlandii OhILAs 50S ribosomal protein L31 YP_001514117.1 2792175 R 350688 CDS YP_001514118.1 158321611 5677265 complement(2792486..2793877) 1 NC_009922.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 2793877 rho 5677265 rho Alkaliphilus oremlandii OhILAs transcription termination factor Rho YP_001514118.1 2792486 R 350688 CDS YP_001514119.1 158321612 5677266 complement(2794035..2794784) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_0314 hypothetical protein; ABC transporter 2794784 5677266 Clos_2592 Alkaliphilus oremlandii OhILAs ABC transporter YP_001514119.1 2794035 R 350688 CDS YP_001514120.1 158321613 5677267 complement(2794798..2795439) 1 NC_009922.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpf:CPF_1532 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; polar amino acid ABC transporter inner membrane subunit 2795439 5677267 Clos_2593 Alkaliphilus oremlandii OhILAs polar amino acid ABC transporter inner membrane subunit YP_001514120.1 2794798 R 350688 CDS YP_001514121.1 158321614 5677268 complement(2795471..2796325) 1 NC_009922.1 PFAM: extracellular solute-binding protein family 3; KEGG: cdf:CD1774 amino acid ABC transporter, substrate-binding protein; extracellular solute-binding protein 2796325 5677268 Clos_2594 Alkaliphilus oremlandii OhILAs extracellular solute-binding protein YP_001514121.1 2795471 R 350688 CDS YP_001514122.1 158321615 5677269 complement(2796805..2797773) 1 NC_009922.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 2797773 glpX 5677269 glpX Alkaliphilus oremlandii OhILAs fructose 1,6-bisphosphatase II YP_001514122.1 2796805 R 350688 CDS YP_001514123.1 158321616 5677270 complement(2797930..2798574) 1 NC_009922.1 KEGG: cno:NT01CX_0748 transaldolase; TIGRFAM: putative transaldolase; PFAM: Transaldolase; putative transaldolase 2798574 5677270 Clos_2596 Alkaliphilus oremlandii OhILAs putative transaldolase YP_001514123.1 2797930 R 350688 CDS YP_001514124.1 158321617 5677271 complement(2798586..2799395) 1 NC_009922.1 PFAM: protein of unknown function DUF849; KEGG: rfr:Rfer_3885 protein of unknown function DUF849; hypothetical protein 2799395 5677271 Clos_2597 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514124.1 2798586 R 350688 CDS YP_001514125.1 158321618 5676927 complement(2799423..2799803) 1 NC_009922.1 KEGG: fnu:FN1869 hypothetical protein; hypothetical protein 2799803 5676927 Clos_2598 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514125.1 2799423 R 350688 CDS YP_001514126.1 158321619 5676928 2800253..2801617 1 NC_009922.1 PFAM: sodium:neurotransmitter symporter; KEGG: amt:Amet_0315 sodium:neurotransmitter symporter; sodium:neurotransmitter symporter 2801617 5676928 Clos_2599 Alkaliphilus oremlandii OhILAs sodium:neurotransmitter symporter YP_001514126.1 2800253 D 350688 CDS YP_001514127.1 158321620 5676929 2802038..2803405 1 NC_009922.1 PFAM: sodium:neurotransmitter symporter; KEGG: amt:Amet_0315 sodium:neurotransmitter symporter; sodium:neurotransmitter symporter 2803405 5676929 Clos_2600 Alkaliphilus oremlandii OhILAs sodium:neurotransmitter symporter YP_001514127.1 2802038 D 350688 CDS YP_001514128.1 158321621 5676930 complement(2803588..2805441) 1 NC_009922.1 PFAM: S-layer domain protein; KEGG: amt:Amet_0191 S-layer domain protein; S-layer domain-containing protein 2805441 5676930 Clos_2601 Alkaliphilus oremlandii OhILAs S-layer domain-containing protein YP_001514128.1 2803588 R 350688 CDS YP_001514129.1 158321622 5676931 complement(2805832..2807313) 1 NC_009922.1 PFAM: S-layer domain protein; KEGG: amt:Amet_0182 S-layer domain protein; S-layer domain-containing protein 2807313 5676931 Clos_2602 Alkaliphilus oremlandii OhILAs S-layer domain-containing protein YP_001514129.1 2805832 R 350688 CDS YP_001514130.1 158321623 5676932 complement(2807326..2808993) 1 NC_009922.1 KEGG: amt:Amet_0181 S-layer domain protein; hypothetical protein 2808993 5676932 Clos_2603 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514130.1 2807326 R 350688 CDS YP_001514131.1 158321624 5676933 complement(2808998..2815225) 1 NC_009922.1 PFAM: cell surface receptor IPT/TIG domain protein; Fibronectin type III domain protein; KEGG: amt:Amet_0180 fibronectin, type III domain protein; fibronectin type III domain-containing protein 2815225 5676933 Clos_2604 Alkaliphilus oremlandii OhILAs fibronectin type III domain-containing protein YP_001514131.1 2808998 R 350688 CDS YP_001514132.1 158321625 5676934 complement(2815299..2819654) 1 NC_009922.1 hypothetical protein 2819654 5676934 Clos_2605 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514132.1 2815299 R 350688 CDS YP_001514133.1 158321626 5676935 complement(2819853..2821034) 1 NC_009922.1 KEGG: dsy:DSY3259 hypothetical protein; hypothetical protein 2821034 5676935 Clos_2606 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514133.1 2819853 R 350688 CDS YP_001514134.1 158321627 5676936 complement(2821255..2821917) 1 NC_009922.1 hypothetical protein 2821917 5676936 Clos_2607 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514134.1 2821255 R 350688 CDS YP_001514135.1 158321628 5677335 2822376..2822978 1 NC_009922.1 KEGG: csc:Csac_0095 hypothetical protein; hypothetical protein 2822978 5677335 Clos_2608 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514135.1 2822376 D 350688 CDS YP_001514136.1 158321629 5677336 2823188..2825188 1 NC_009922.1 PFAM: histidine kinase HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: dsy:DSY4989 hypothetical protein; methyl-accepting chemotaxis sensory transducer with Cache sensor 2825188 5677336 Clos_2609 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer with Cache sensor YP_001514136.1 2823188 D 350688 CDS YP_001514137.1 158321630 5677337 complement(2825264..2826127) 1 NC_009922.1 KEGG: tpt:Tpet_1658 hypothetical protein; hypothetical protein 2826127 5677337 Clos_2610 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514137.1 2825264 R 350688 CDS YP_001514138.1 158321631 5677338 complement(2826303..2829416) 1 NC_009922.1 PFAM: acriflavin resistance protein; KEGG: dsy:DSY3359 hypothetical protein; acriflavin resistance protein 2829416 5677338 Clos_2611 Alkaliphilus oremlandii OhILAs acriflavin resistance protein YP_001514138.1 2826303 R 350688 CDS YP_001514139.1 158321632 5677339 complement(2829419..2830639) 1 NC_009922.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3360 hypothetical protein; RND family efflux transporter MFP subunit 2830639 5677339 Clos_2612 Alkaliphilus oremlandii OhILAs RND family efflux transporter MFP subunit YP_001514139.1 2829419 R 350688 CDS YP_001514140.1 158321633 5677340 complement(2830869..2831867) 1 NC_009922.1 PFAM: copper amine oxidase domain protein; copper amine oxidase domain-containing protein 2831867 5677340 Clos_2613 Alkaliphilus oremlandii OhILAs copper amine oxidase domain-containing protein YP_001514140.1 2830869 R 350688 CDS YP_001514141.1 158321634 5677341 complement(2831946..2833274) 1 NC_009922.1 PFAM: protein of unknown function DUF214; KEGG: cac:CAC0320 predicted permease; hypothetical protein 2833274 5677341 Clos_2614 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514141.1 2831946 R 350688 CDS YP_001514142.1 158321635 5677342 complement(2833285..2834949) 1 NC_009922.1 TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: csc:Csac_2448 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2834949 5677342 Clos_2615 Alkaliphilus oremlandii OhILAs RND family efflux transporter MFP subunit YP_001514142.1 2833285 R 350688 CDS YP_001514143.1 158321636 5677343 complement(2834980..2835690) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: smu:SMU.863 putative ABC transporter, ATP-binding protein; ABC transporter 2835690 5677343 Clos_2616 Alkaliphilus oremlandii OhILAs ABC transporter YP_001514143.1 2834980 R 350688 CDS YP_001514144.1 158321637 5677344 complement(2835906..2837135) 1 NC_009922.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY1327 hypothetical protein; RND family efflux transporter MFP subunit 2837135 5677344 Clos_2617 Alkaliphilus oremlandii OhILAs RND family efflux transporter MFP subunit YP_001514144.1 2835906 R 350688 CDS YP_001514145.1 158321638 5677691 complement(2837190..2839547) 1 NC_009922.1 PFAM: protein of unknown function DUF214; KEGG: dsy:DSY4806 hypothetical protein; hypothetical protein 2839547 5677691 Clos_2618 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514145.1 2837190 R 350688 CDS YP_001514146.1 158321639 5677692 complement(2839547..2840257) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swo:Swol_1715 ATPase; ABC transporter 2840257 5677692 Clos_2619 Alkaliphilus oremlandii OhILAs ABC transporter YP_001514146.1 2839547 R 350688 CDS YP_001514147.1 158321640 5677693 complement(2840271..2840849) 1 NC_009922.1 PFAM: regulatory protein TetR; KEGG: bja:blr3443 transcriptional regulatory protein; TetR family transcriptional regulator 2840849 5677693 Clos_2620 Alkaliphilus oremlandii OhILAs TetR family transcriptional regulator YP_001514147.1 2840271 R 350688 CDS YP_001514148.1 158321641 5677694 complement(2840990..2842204) 1 NC_009922.1 KEGG: cth:Cthe_1764 outer membrane protein-like protein; Outer membrane protein-like protein 2842204 5677694 Clos_2621 Alkaliphilus oremlandii OhILAs Outer membrane protein-like protein YP_001514148.1 2840990 R 350688 CDS YP_001514149.1 158321642 5677695 complement(2842503..2843000) 1 NC_009922.1 hypothetical protein 2843000 5677695 Clos_2622 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514149.1 2842503 R 350688 CDS YP_001514150.1 158321643 5677696 complement(2843148..2844008) 1 NC_009922.1 PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: lpl:lp_1892 integrase/recombinase; integrase family protein 2844008 5677696 Clos_2623 Alkaliphilus oremlandii OhILAs integrase family protein YP_001514150.1 2843148 R 350688 CDS YP_001514151.1 158321644 5677697 2844012..2846321 1 NC_009922.1 KEGG: gka:GK3186 surface layer (S-layer) glycoprotein; hypothetical protein 2846321 5677697 Clos_2624 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514151.1 2844012 D 350688 CDS YP_001514152.1 158321645 5677698 complement(2846701..2847918) 1 NC_009922.1 PFAM: transposase mutator type; KEGG: cth:Cthe_1533 transposase, mutator type; transposase mutator type 2847918 5677698 Clos_2625 Alkaliphilus oremlandii OhILAs transposase mutator type YP_001514152.1 2846701 R 350688 CDS YP_001514153.1 158321646 5677699 complement(2848104..2850188) 1 NC_009922.1 KEGG: btl:BALH_0800 S-layer protein; hypothetical protein 2850188 5677699 Clos_2626 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514153.1 2848104 R 350688 CDS YP_001514154.1 158321647 5677700 complement(2850320..2853109) 1 NC_009922.1 PFAM: S-layer domain protein; KEGG: sth:STH44 putative middle wall protein precursor; S-layer domain-containing protein 2853109 5677700 Clos_2627 Alkaliphilus oremlandii OhILAs S-layer domain-containing protein YP_001514154.1 2850320 R 350688 CDS YP_001514155.1 158321648 5678769 2853614..2854177 1 NC_009922.1 PFAM: S-layer domain protein; KEGG: cth:Cthe_2384 S-layer-like domain containing protein; S-layer domain-containing protein 2854177 5678769 Clos_2628 Alkaliphilus oremlandii OhILAs S-layer domain-containing protein YP_001514155.1 2853614 D 350688 CDS YP_001514156.1 158321649 5678770 complement(2854406..2856811) 1 NC_009922.1 KEGG: cth:Cthe_2681 serine phosphatase; TIGRFAM: Sporulation stage II protein E; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; stage II sporulation protein E 2856811 5678770 Clos_2629 Alkaliphilus oremlandii OhILAs stage II sporulation protein E YP_001514156.1 2854406 R 350688 CDS YP_001514157.1 158321650 5678771 complement(2857083..2858036) 1 NC_009922.1 PFAM: Ppx/GppA phosphatase; KEGG: cdf:CD3491 putative exopolyphosphatase; Ppx/GppA phosphatase 2858036 5678771 Clos_2630 Alkaliphilus oremlandii OhILAs Ppx/GppA phosphatase YP_001514157.1 2857083 R 350688 CDS YP_001514158.1 158321651 5678772 complement(2858124..2858552) 1 NC_009922.1 PFAM: RNA binding S1 domain protein; KEGG: cbo:CBO3529 RNA binding protein; RNA-binding S1 domain-containing protein 2858552 5678772 Clos_2631 Alkaliphilus oremlandii OhILAs RNA-binding S1 domain-containing protein YP_001514158.1 2858124 R 350688 CDS YP_001514159.1 158321652 5678773 complement(2858634..2858936) 1 NC_009922.1 PFAM: Septum formation initiator; KEGG: bha:BH0076 cell-division initiation protein (septum formation); septum formation initiator 2858936 5678773 Clos_2632 Alkaliphilus oremlandii OhILAs septum formation initiator YP_001514159.1 2858634 R 350688 CDS YP_001514160.1 158321653 5678774 complement(2858956..2859477) 1 NC_009922.1 TIGRFAM: Spore cortex biosynthesis protein YabQ; KEGG: tte:TTE2446 hypothetical protein; spore cortex biosynthesis protein YabQ 2859477 5678774 Clos_2633 Alkaliphilus oremlandii OhILAs spore cortex biosynthesis protein YabQ YP_001514160.1 2858956 R 350688 CDS YP_001514161.1 158321654 5678775 complement(2859600..2859890) 1 NC_009922.1 PFAM: YabP family protein; KEGG: tte:TTE2450 hypothetical protein; YabP family protein 2859890 5678775 Clos_2634 Alkaliphilus oremlandii OhILAs YabP family protein YP_001514161.1 2859600 R 350688 CDS YP_001514162.1 158321655 5678776 complement(2859956..2860945) 1 NC_009922.1 TIGRFAM: SpoIID/LytB domain; PFAM: Stage II sporulation D domain protein; KEGG: tte:TTE2451 sporulation protein and related proteins; SpoIID/LytB domain-containing protein 2860945 5678776 Clos_2635 Alkaliphilus oremlandii OhILAs SpoIID/LytB domain-containing protein YP_001514162.1 2859956 R 350688 CDS YP_001514163.1 158321656 5678777 complement(2861000..2861242) 1 NC_009922.1 PFAM: RNA-binding S4 domain protein; KEGG: cpf:CPF_2801 S4 domain protein; RNA-binding S4 domain-containing protein 2861242 5678777 Clos_2636 Alkaliphilus oremlandii OhILAs RNA-binding S4 domain-containing protein YP_001514163.1 2861000 R 350688 CDS YP_001514164.1 158321657 5678778 complement(2861445..2861723) 1 NC_009922.1 PFAM: histone family protein DNA-binding protein; KEGG: tva:TVAG_243740 DNA-binding protein HU, putative; histone family protein DNA-binding protein 2861723 5678778 Clos_2637 Alkaliphilus oremlandii OhILAs histone family protein DNA-binding protein YP_001514164.1 2861445 R 350688 CDS YP_001514165.1 158321658 5677430 complement(2861856..2862926) 1 NC_009922.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; MazG nucleotide pyrophosphohydrolase; KEGG: cbo:CBO3535 tetrapyrrole (corrin/porphyrin) methylase and nucleoside triphosphate pyrophosphohydrolase fusion protein; MazG nucleotide pyrophosphohydrolase 2862926 5677430 Clos_2638 Alkaliphilus oremlandii OhILAs MazG nucleotide pyrophosphohydrolase YP_001514165.1 2861856 R 350688 CDS YP_001514166.1 158321659 5677431 complement(2862936..2864534) 1 NC_009922.1 PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: cdf:CD3498 stage V sporulation protein B; polysaccharide biosynthesis protein 2864534 5677431 Clos_2639 Alkaliphilus oremlandii OhILAs polysaccharide biosynthesis protein YP_001514166.1 2862936 R 350688 CDS YP_001514167.1 158321660 5677432 complement(2864754..2865302) 1 NC_009922.1 TIGRFAM: transcriptional regulator, AbrB family; Sporulation stage V protein T; PFAM: SpoVT/AbrB domain protein; KEGG: cth:Cthe_2655 transcriptional regulator, AbrB family; AbrB family transcriptional regulator 2865302 5677432 Clos_2640 Alkaliphilus oremlandii OhILAs AbrB family transcriptional regulator YP_001514167.1 2864754 R 350688 CDS YP_001514168.1 158321661 5677433 complement(2865395..2866348) 1 NC_009922.1 PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: cdf:CD3500 putative foldase lipoprotein (late stage protein export lipoprotein); PpiC-type peptidyl-prolyl cis-trans isomerase 2866348 5677433 Clos_2641 Alkaliphilus oremlandii OhILAs PpiC-type peptidyl-prolyl cis-trans isomerase YP_001514168.1 2865395 R 350688 CDS YP_001514169.1 158321662 5677434 complement(2866394..2869918) 1 NC_009922.1 KEGG: tte:TTE2565 Transcription-repair coupling factor - superfamily II helicase; TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; transcription-repair coupling factor 2869918 5677434 Clos_2642 Alkaliphilus oremlandii OhILAs transcription-repair coupling factor YP_001514169.1 2866394 R 350688 CDS YP_001514170.1 158321663 5677435 complement(2869985..2870365) 1 NC_009922.1 KEGG: tte:TTE2566 hypothetical protein; hypothetical protein 2870365 5677435 Clos_2643 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514170.1 2869985 R 350688 CDS YP_001514171.1 158321664 5677436 complement(2870450..2871007) 1 NC_009922.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 2871007 5677436 Clos_2644 Alkaliphilus oremlandii OhILAs peptidyl-tRNA hydrolase YP_001514171.1 2870450 R 350688 CDS YP_001514172.1 158321665 5677437 complement(2871041..2871988) 1 NC_009922.1 KEGG: csc:Csac_1204 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 2871988 5677437 Clos_2645 Alkaliphilus oremlandii OhILAs ribose-phosphate pyrophosphokinase YP_001514172.1 2871041 R 350688 CDS YP_001514173.1 158321666 5677438 complement(2872042..2873409) 1 NC_009922.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 2873409 glmU 5677438 glmU Alkaliphilus oremlandii OhILAs bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_001514173.1 2872042 R 350688 CDS YP_001514174.1 158321667 5677439 complement(2873723..2874004) 1 NC_009922.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 2874004 5677439 Clos_2647 Alkaliphilus oremlandii OhILAs regulatory protein SpoVG YP_001514174.1 2873723 R 350688 CDS YP_001514175.1 158321668 5676610 complement(2874180..2875001) 1 NC_009922.1 TIGRFAM: pur operon repressor; PFAM: phosphoribosyltransferase; purine repressor; KEGG: cdf:CD3517 putative transcriptional repressor; pur operon repressor 2875001 5676610 Clos_2648 Alkaliphilus oremlandii OhILAs pur operon repressor YP_001514175.1 2874180 R 350688 CDS YP_001514176.1 158321669 5676611 2875349..2876746 1 NC_009922.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 2876746 murC 5676611 murC Alkaliphilus oremlandii OhILAs UDP-N-acetylmuramate--L-alanine ligase YP_001514176.1 2875349 D 350688 CDS YP_001514177.1 158321670 5676612 complement(2877032..2878024) 1 NC_009922.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tte:TTE0026 transcriptional regulator; cell envelope-related transcriptional attenuator 2878024 5676612 Clos_2650 Alkaliphilus oremlandii OhILAs cell envelope-related transcriptional attenuator YP_001514177.1 2877032 R 350688 CDS YP_001514178.1 158321671 5676613 complement(2878188..2880377) 1 NC_009922.1 PFAM: transglutaminase domain protein; KEGG: tte:TTE2213 transglutaminase-like enzyme, putative cysteine protease; transglutaminase domain-containing protein 2880377 5676613 Clos_2651 Alkaliphilus oremlandii OhILAs transglutaminase domain-containing protein YP_001514178.1 2878188 R 350688 CDS YP_001514179.1 158321672 5676614 complement(2880379..2881593) 1 NC_009922.1 PFAM: protein of unknown function DUF58; KEGG: tte:TTE2214 hypothetical protein; hypothetical protein 2881593 5676614 Clos_2652 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514179.1 2880379 R 350688 CDS YP_001514180.1 158321673 5676615 complement(2881583..2882533) 1 NC_009922.1 PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: tte:TTE2215 MoxR-like ATPases; ATPase 2882533 5676615 Clos_2653 Alkaliphilus oremlandii OhILAs ATPase YP_001514180.1 2881583 R 350688 CDS YP_001514181.1 158321674 5676616 complement(2883040..2884155) 1 NC_009922.1 TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase M42 family protein; peptidase dimerisation domain protein; KEGG: cdf:CD3521 putative peptidase; peptidase T-like protein 2884155 5676616 Clos_2654 Alkaliphilus oremlandii OhILAs peptidase T-like protein YP_001514181.1 2883040 R 350688 CDS YP_001514182.1 158321675 5676617 complement(2884398..2885948) 1 NC_009922.1 PFAM: C4-dicarboxylate anaerobic carrier; AbgT putative transporter; short chain fatty acid transporter; KEGG: ctc:CTC01323 aminobenzoyl-glutamate transport protein; AbgT transporter 2885948 5676617 Clos_2655 Alkaliphilus oremlandii OhILAs AbgT transporter YP_001514182.1 2884398 R 350688 CDS YP_001514183.1 158321676 5676618 complement(2886435..2887577) 1 NC_009922.1 KEGG: tte:TTE0114 hypothetical protein; hypothetical protein 2887577 5676618 Clos_2656 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514183.1 2886435 R 350688 CDS YP_001514184.1 158321677 5676619 complement(2887694..2888557) 1 NC_009922.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 2888557 ksgA 5676619 ksgA Alkaliphilus oremlandii OhILAs dimethyladenosine transferase YP_001514184.1 2887694 R 350688 CDS YP_001514185.1 158321678 5678069 complement(2888567..2889103) 1 NC_009922.1 KEGG: cdf:CD3524 putative DNA-binding protein; TIGRFAM: primase/topoisomerase like protein; PFAM: TOPRIM domain protein; SMART: Toprim sub domain protein; primase/topoisomerase-like protein 2889103 5678069 Clos_2658 Alkaliphilus oremlandii OhILAs primase/topoisomerase-like protein YP_001514185.1 2888567 R 350688 CDS YP_001514186.1 158321679 5678070 complement(2889328..2890365) 1 NC_009922.1 PFAM: protein of unknown function DUF348; 3D domain protein; G5 domain protein; KEGG: tte:TTE0112 hypothetical protein; 3D domain-containing protein 2890365 5678070 Clos_2659 Alkaliphilus oremlandii OhILAs 3D domain-containing protein YP_001514186.1 2889328 R 350688 CDS YP_001514187.1 158321680 5678071 complement(2890596..2891699) 1 NC_009922.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: cth:Cthe_0898 metal dependent phosphohydrolase; metal dependent phosphohydrolase 2891699 5678071 Clos_2660 Alkaliphilus oremlandii OhILAs metal dependent phosphohydrolase YP_001514187.1 2890596 R 350688 CDS YP_001514188.1 158321681 5678072 complement(2891796..2892563) 1 NC_009922.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: cdf:CD3539 putative deoxyribonuclease; TatD family hydrolase 2892563 5678072 Clos_2661 Alkaliphilus oremlandii OhILAs TatD family hydrolase YP_001514188.1 2891796 R 350688 CDS YP_001514189.1 158321682 5678073 complement(2892576..2894540) 1 NC_009922.1 TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; PFAM: t-RNA-binding domain protein; tRNA synthetase class I (M); KEGG: cdf:CD3540 methionyl-tRNA synthetase; methionyl-tRNA synthetase 2894540 5678073 Clos_2662 Alkaliphilus oremlandii OhILAs methionyl-tRNA synthetase YP_001514189.1 2892576 R 350688 CDS YP_001514190.1 158321683 5678074 2895017..2896438 1 NC_009922.1 hypothetical protein 2896438 5678074 Clos_2663 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514190.1 2895017 D 350688 CDS YP_001514191.1 158321684 5678075 complement(2896697..2897230) 1 NC_009922.1 PFAM: nucleoside recognition domain protein; KEGG: ctc:CTC00239 spore maturation protein B; nucleoside recognition domain-containing protein 2897230 5678075 Clos_2664 Alkaliphilus oremlandii OhILAs nucleoside recognition domain-containing protein YP_001514191.1 2896697 R 350688 CDS YP_001514192.1 158321685 5678076 complement(2897227..2897799) 1 NC_009922.1 PFAM: nucleoside recognition domain protein; KEGG: cdf:CD3542 spore maturation protein A; nucleoside recognition domain-containing protein 2897799 5678076 Clos_2665 Alkaliphilus oremlandii OhILAs nucleoside recognition domain-containing protein YP_001514192.1 2897227 R 350688 CDS YP_001514193.1 158321686 5678077 2897989..2899422 1 NC_009922.1 TIGRFAM: putative nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase and related; KEGG: cdf:CD3543 putative nicotinate phosphribosyltransferase; putative nicotinate phosphoribosyltransferase 2899422 5678077 Clos_2666 Alkaliphilus oremlandii OhILAs putative nicotinate phosphoribosyltransferase YP_001514193.1 2897989 D 350688 CDS YP_001514194.1 158321687 5678078 2899575..2899814 1 NC_009922.1 TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cth:Cthe_2100 transcriptional regulator, AbrB family; AbrB family transcriptional regulator 2899814 5678078 Clos_2667 Alkaliphilus oremlandii OhILAs AbrB family transcriptional regulator YP_001514194.1 2899575 D 350688 CDS YP_001514195.1 158321688 5678377 complement(2899901..2900746) 1 NC_009922.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cdf:CD3546 putative corrin/porphyrin methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase 2900746 5678377 Clos_2668 Alkaliphilus oremlandii OhILAs uroporphyrin-III C/tetrapyrrole methyltransferase YP_001514195.1 2899901 R 350688 CDS YP_001514196.1 158321689 5678378 complement(2900739..2901506) 1 NC_009922.1 PFAM: methyltransferase small; KEGG: cdf:CD3547 hypothetical protein; methyltransferase small 2901506 5678378 Clos_2669 Alkaliphilus oremlandii OhILAs methyltransferase small YP_001514196.1 2900739 R 350688 CDS YP_001514197.1 158321690 5678379 complement(2901790..2902080) 1 NC_009922.1 hypothetical protein 2902080 5678379 Clos_2670 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514197.1 2901790 R 350688 CDS YP_001514198.1 158321691 5678380 complement(2902345..2903136) 1 NC_009922.1 KEGG: pth:PTH_2611 hypothetical membrane protein; hypothetical protein 2903136 5678380 Clos_2671 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514198.1 2902345 R 350688 CDS YP_001514199.1 158321692 5678381 complement(2903281..2904318) 1 NC_009922.1 KEGG: mmu:639469 hypothetical protein LOC639469; hypothetical protein 2904318 5678381 Clos_2672 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514199.1 2903281 R 350688 CDS YP_001514200.1 158321693 5678382 complement(2904293..2905045) 1 NC_009922.1 Heat shock-induced; putative RNA polymerase sigma factor SigI 2905045 5678382 Clos_2673 Alkaliphilus oremlandii OhILAs putative RNA polymerase sigma factor SigI YP_001514200.1 2904293 R 350688 CDS YP_001514201.1 158321694 5678383 complement(2905260..2906648) 1 NC_009922.1 PFAM: Na+/H+ antiporter NhaC; KEGG: chy:CHY_1625 Na+/H+ antiporter; Na+/H+ antiporter NhaC 2906648 5678383 Clos_2674 Alkaliphilus oremlandii OhILAs Na+/H+ antiporter NhaC YP_001514201.1 2905260 R 350688 CDS YP_001514202.1 158321695 5678384 complement(2906662..2907225) 1 NC_009922.1 PFAM: Chromate transporter; KEGG: cpr:CPR_2214 probable chromate transport protein, putative; chromate transporter 2907225 5678384 Clos_2675 Alkaliphilus oremlandii OhILAs chromate transporter YP_001514202.1 2906662 R 350688 CDS YP_001514203.1 158321696 5678385 complement(2907222..2907773) 1 NC_009922.1 PFAM: Chromate transporter; KEGG: cpf:CPF_2509 chromate transport protein; chromate transporter 2907773 5678385 Clos_2676 Alkaliphilus oremlandii OhILAs chromate transporter YP_001514203.1 2907222 R 350688 CDS YP_001514204.1 158321697 5678386 complement(2907919..2909781) 1 NC_009922.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1825 ABC-type multidrug/protein/lipid transport system, ATPase; ABC transporter 2909781 5678386 Clos_2677 Alkaliphilus oremlandii OhILAs ABC transporter YP_001514204.1 2907919 R 350688 CDS YP_001514205.1 158321698 5678542 complement(2909781..2911508) 1 NC_009922.1 PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1824 ABC transporter, ATP-binding protein; ABC transporter related 2911508 5678542 Clos_2678 Alkaliphilus oremlandii OhILAs ABC transporter related YP_001514205.1 2909781 R 350688 CDS YP_001514206.1 158321699 5678543 complement(2911630..2912073) 1 NC_009922.1 PFAM: regulatory protein MarR; KEGG: cdf:CD2212 MarR-family transcriptional regulator; MarR family transcriptional regulator 2912073 5678543 Clos_2679 Alkaliphilus oremlandii OhILAs MarR family transcriptional regulator YP_001514206.1 2911630 R 350688 CDS YP_001514207.1 158321700 5678544 complement(2912258..2912899) 1 NC_009922.1 PFAM: Di-trans-poly-cis-decaprenylcistransferase; KEGG: cac:CAC1432 undecaprenyl pyrophosphate synthase related enzyme; di-trans-poly-cis-decaprenylcistransferase 2912899 5678544 Clos_2680 Alkaliphilus oremlandii OhILAs di-trans-poly-cis-decaprenylcistransferase YP_001514207.1 2912258 R 350688 CDS YP_001514208.1 158321701 5678545 2913022..2914227 1 NC_009922.1 PFAM: phosphoesterase DHHA1; Threonyl/alanyl tRNA synthetase SAD; KEGG: cdf:CD2163 putative RNA-binding protein; threonyl/alanyl tRNA synthetase SAD 2914227 5678545 Clos_2681 Alkaliphilus oremlandii OhILAs threonyl/alanyl tRNA synthetase SAD YP_001514208.1 2913022 D 350688 CDS YP_001514209.1 158321702 5678546 2914641..2915306 1 NC_009922.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY4690 hypothetical protein; polar amino acid ABC transporter inner membrane subunit 2915306 5678546 Clos_2682 Alkaliphilus oremlandii OhILAs polar amino acid ABC transporter inner membrane subunit YP_001514209.1 2914641 D 350688 CDS YP_001514210.1 158321703 5678547 2915287..2915964 1 NC_009922.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY4689 hypothetical protein; polar amino acid ABC transporter inner membrane subunit 2915964 5678547 Clos_2683 Alkaliphilus oremlandii OhILAs polar amino acid ABC transporter inner membrane subunit YP_001514210.1 2915287 D 350688 CDS YP_001514211.1 158321704 5678548 2915977..2916726 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY4688 hypothetical protein; ABC transporter 2916726 5678548 Clos_2684 Alkaliphilus oremlandii OhILAs ABC transporter YP_001514211.1 2915977 D 350688 CDS YP_001514212.1 158321705 5678549 2916761..2917618 1 NC_009922.1 PFAM: extracellular solute-binding protein family 3; KEGG: dsy:DSY4687 hypothetical protein; extracellular solute-binding protein 2917618 5678549 Clos_2685 Alkaliphilus oremlandii OhILAs extracellular solute-binding protein YP_001514212.1 2916761 D 350688 CDS YP_001514213.1 158321706 5678550 2917873..2918415 1 NC_009922.1 PFAM: CDP-alcohol phosphatidyltransferase; KEGG: dsy:DSY2617 hypothetical protein; CDP-alcohol phosphatidyltransferase 2918415 5678550 Clos_2686 Alkaliphilus oremlandii OhILAs CDP-alcohol phosphatidyltransferase YP_001514213.1 2917873 D 350688 CDS YP_001514214.1 158321707 5678551 complement(2918504..2919250) 1 NC_009922.1 KEGG: cdf:CD1121 glycerol dehydratase activator; TIGRFAM: glycyl-radical enzyme activating protein family; PFAM: Radical SAM domain protein; glycyl-radical activating family protein 2919250 5678551 Clos_2687 Alkaliphilus oremlandii OhILAs glycyl-radical activating family protein YP_001514214.1 2918504 R 350688 CDS YP_001514215.1 158321708 5678741 complement(2919280..2921649) 1 NC_009922.1 KEGG: cdf:CD1120 glycerol dehydratase; TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase PFL; pyruvate formate-lyase 2921649 5678741 Clos_2688 Alkaliphilus oremlandii OhILAs pyruvate formate-lyase YP_001514215.1 2919280 R 350688 CDS YP_001514216.1 158321709 5678742 complement(2921947..2922624) 1 NC_009922.1 PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: ppu:PP_4345 transcriptional regulator, GntR family; GntR family transcriptional regulator 2922624 5678742 Clos_2689 Alkaliphilus oremlandii OhILAs GntR family transcriptional regulator YP_001514216.1 2921947 R 350688 CDS YP_001514217.1 158321710 5678743 complement(2922674..2924473) 1 NC_009922.1 TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: amt:Amet_3460 flavocytochrome c; flavocytochrome c 2924473 5678743 Clos_2690 Alkaliphilus oremlandii OhILAs flavocytochrome c YP_001514217.1 2922674 R 350688 CDS YP_001514218.1 158321711 5678744 2924789..2925370 1 NC_009922.1 PFAM: regulatory protein TetR; KEGG: amt:Amet_3505 transcriptional regulator, TetR family; TetR family transcriptional regulator 2925370 5678744 Clos_2691 Alkaliphilus oremlandii OhILAs TetR family transcriptional regulator YP_001514218.1 2924789 D 350688 CDS YP_001514219.1 158321712 5678745 complement(2925529..2926929) 1 NC_009922.1 PFAM: Na+/solute symporter; KEGG: mfa:Mfla_1786 Na+/solute symporter; Na+/solute symporter 2926929 5678745 Clos_2692 Alkaliphilus oremlandii OhILAs Na+/solute symporter YP_001514219.1 2925529 R 350688 CDS YP_001514220.1 158321713 5678746 complement(2926945..2927574) 1 NC_009922.1 KEGG: ctc:CTC01751 thiamin-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 2927574 5678746 Clos_2693 Alkaliphilus oremlandii OhILAs thiamine-phosphate pyrophosphorylase YP_001514220.1 2926945 R 350688 CDS YP_001514221.1 158321714 5678747 complement(2927564..2928379) 1 NC_009922.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 2928379 5678747 Clos_2694 Alkaliphilus oremlandii OhILAs hydroxyethylthiazole kinase YP_001514221.1 2927564 R 350688 CDS YP_001514222.1 158321715 5678748 complement(2928422..2929204) 1 NC_009922.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: amt:Amet_1249 phosphomethylpyrimidine kinase; phosphomethylpyrimidine kinase 2929204 5678748 Clos_2695 Alkaliphilus oremlandii OhILAs phosphomethylpyrimidine kinase YP_001514222.1 2928422 R 350688 CDS YP_001514223.1 158321716 5678749 complement(2929694..2930470) 1 NC_009922.1 PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cdf:CD2577 probable short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2930470 5678749 Clos_2696 Alkaliphilus oremlandii OhILAs short-chain dehydrogenase/reductase SDR YP_001514223.1 2929694 R 350688 CDS YP_001514224.1 158321717 5678475 complement(2930534..2931220) 1 NC_009922.1 PFAM: SAICAR synthetase; KEGG: dsy:DSY0789 hypothetical protein; phosphoribosylaminoimidazole-succinocarboxamide synthase 2931220 5678475 Clos_2697 Alkaliphilus oremlandii OhILAs phosphoribosylaminoimidazole-succinocarboxamide synthase YP_001514224.1 2930534 R 350688 CDS YP_001514225.1 158321718 5678476 2931712..2933031 1 NC_009922.1 PFAM: branched-chain amino acid transport system II carrier protein; KEGG: cno:NT01CX_1664 branched-chain amino acid transport system II carrier protein; branched-chain amino acid transport system II carrier protein 2933031 5678476 Clos_2698 Alkaliphilus oremlandii OhILAs branched-chain amino acid transport system II carrier protein YP_001514225.1 2931712 D 350688 CDS YP_001514226.1 158321719 5678477 complement(2933119..2935056) 1 NC_009922.1 PFAM: DNA mismatch repair protein MutS domain protein; SMART: MutS III domain protein; KEGG: bcl:ABC4018 DNA mismatch repair protein, MutS family; DNA mismatch repair protein MutS domain-containing protein 2935056 5678477 Clos_2699 Alkaliphilus oremlandii OhILAs DNA mismatch repair protein MutS domain-containing protein YP_001514226.1 2933119 R 350688 CDS YP_001514227.1 158321720 5678478 complement(2935624..2937951) 1 NC_009922.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cdf:CD2570 two-component sensor histidine kinase; integral membrane sensor signal transduction histidine kinase 2937951 5678478 Clos_2700 Alkaliphilus oremlandii OhILAs integral membrane sensor signal transduction histidine kinase YP_001514227.1 2935624 R 350688 CDS YP_001514228.1 158321721 5678479 complement(2937920..2938618) 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cpf:CPF_0459 DNA-binding response regulator; two component transcriptional regulator 2938618 5678479 Clos_2701 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001514228.1 2937920 R 350688 CDS YP_001514229.1 158321722 5678480 2939297..2940289 1 NC_009922.1 PFAM: protein of unknown function DUF534; KEGG: cdf:CD0876 ABC transporter, substrate-binding lipoprotein; hypothetical protein 2940289 5678480 Clos_2702 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514229.1 2939297 D 350688 CDS YP_001514230.1 158321723 5678481 2940413..2941288 1 NC_009922.1 PFAM: inner-membrane translocator; KEGG: cbo:CBO1163 ABC transporter, permease protein; inner-membrane translocator 2941288 5678481 Clos_2703 Alkaliphilus oremlandii OhILAs inner-membrane translocator YP_001514230.1 2940413 D 350688 CDS YP_001514231.1 158321724 5678482 2941281..2942048 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fnu:FN2079 ABC transporter ATP-binding protein; ABC transporter 2942048 5678482 Clos_2704 Alkaliphilus oremlandii OhILAs ABC transporter YP_001514231.1 2941281 D 350688 CDS YP_001514232.1 158321725 5678483 2942593..2943585 1 NC_009922.1 PFAM: protein of unknown function DUF534; KEGG: cdf:CD0873 ABC transporter, substrate-binding lipoprotein; hypothetical protein 2943585 5678483 Clos_2705 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514232.1 2942593 D 350688 CDS YP_001514233.1 158321726 5678484 2943829..2944752 1 NC_009922.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cbo:CBO2013 membrane protein; hypothetical protein 2944752 5678484 Clos_2706 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514233.1 2943829 D 350688 CDS YP_001514234.1 158321727 5676838 2945060..2946583 1 NC_009922.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: bha:BH1513 hypothetical protein; xanthine/uracil/vitamin C permease 2946583 5676838 Clos_2707 Alkaliphilus oremlandii OhILAs xanthine/uracil/vitamin C permease YP_001514234.1 2945060 D 350688 CDS YP_001514235.1 158321728 5676839 complement(2946744..2947451) 1 NC_009922.1 PFAM: sugar fermentation stimulation protein; KEGG: cno:NT01CX_0808 sugar fermentation stimulation protein; sugar fermentation stimulation protein 2947451 5676839 Clos_2708 Alkaliphilus oremlandii OhILAs sugar fermentation stimulation protein YP_001514235.1 2946744 R 350688 CDS YP_001514236.1 158321729 5676840 complement(2947441..2947908) 1 NC_009922.1 PFAM: protein of unknown function DUF188; KEGG: cac:CAC2825 uncharacterized conserved protein, YQXD B.subtilis ortholog; hypothetical protein 2947908 5676840 Clos_2709 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514236.1 2947441 R 350688 CDS YP_001514237.1 158321730 5676841 complement(2948012..2949727) 1 NC_009922.1 PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC00811 fumarate reductase flavoprotein subunit precursor; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 2949727 5676841 Clos_2710 Alkaliphilus oremlandii OhILAs fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_001514237.1 2948012 R 350688 CDS YP_001514238.1 158321731 5676842 2949933..2954831 1 NC_009922.1 TIGRFAM: cytidyltransferase-related domain; PFAM: cytidylyltransferase; KEGG: cbo:CBO2601 transferase; cytidyltransferase-like protein 2954831 5676842 Clos_2711 Alkaliphilus oremlandii OhILAs cytidyltransferase-like protein YP_001514238.1 2949933 D 350688 CDS YP_001514239.1 158321732 5676843 2954833..2956074 1 NC_009922.1 KEGG: cbo:CBO2602 malate/lactate dehydrogenase; malate/lactate dehydrogenase 2956074 5676843 Clos_2712 Alkaliphilus oremlandii OhILAs malate/lactate dehydrogenase YP_001514239.1 2954833 D 350688 CDS YP_001514240.1 158321733 5676844 2956071..2957108 1 NC_009922.1 PFAM: NADPH-dependent FMN reductase; KEGG: cbo:CBO2603 hypothetical protein; NADPH-dependent FMN reductase 2957108 5676844 Clos_2713 Alkaliphilus oremlandii OhILAs NADPH-dependent FMN reductase YP_001514240.1 2956071 D 350688 CDS YP_001514241.1 158321734 5676845 complement(2957369..2959327) 1 NC_009922.1 TIGRFAM: ferrous iron transport protein B; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; Ferrous iron transport B domain protein; nucleoside recognition domain protein; KEGG: ppr:PBPRB1904 hypothetical ferrous ion transport protein B; ferrous iron transport protein B 2959327 5676845 Clos_2714 Alkaliphilus oremlandii OhILAs ferrous iron transport protein B YP_001514241.1 2957369 R 350688 CDS YP_001514242.1 158321735 5676846 complement(2959448..2959663) 1 NC_009922.1 PFAM: FeoA family protein; KEGG: cbo:CBO1028 ferrous iron transport protein; FeoA family protein 2959663 5676846 Clos_2715 Alkaliphilus oremlandii OhILAs FeoA family protein YP_001514242.1 2959448 R 350688 CDS YP_001514243.1 158321736 5676847 complement(2959793..2960392) 1 NC_009922.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: ctc:CTC00146 thiol:disulfide interchange protein TlpA; alkyl hydroperoxide reductase 2960392 5676847 Clos_2716 Alkaliphilus oremlandii OhILAs alkyl hydroperoxide reductase YP_001514243.1 2959793 R 350688 CDS YP_001514244.1 158321737 5676271 complement(2960408..2961103) 1 NC_009922.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: ctc:CTC00145 cytochrome c-type biogenesis protein ccdA; cytochrome c biogenesis protein transmembrane region 2961103 5676271 Clos_2717 Alkaliphilus oremlandii OhILAs cytochrome c biogenesis protein transmembrane region YP_001514244.1 2960408 R 350688 CDS YP_001514245.1 158321738 5676272 2961382..2962872 1 NC_009922.1 PFAM: GerA spore germination protein; KEGG: ctc:CTC02096 spore germination protein KA; GerA spore germination protein 2962872 5676272 Clos_2718 Alkaliphilus oremlandii OhILAs GerA spore germination protein YP_001514245.1 2961382 D 350688 CDS YP_001514246.1 158321739 5676273 2962869..2964023 1 NC_009922.1 PFAM: spore germination B3 GerAC family protein; KEGG: ctc:CTC02095 spore germination protein KC; spore germination B3 GerAC family protein 2964023 5676273 Clos_2719 Alkaliphilus oremlandii OhILAs spore germination B3 GerAC family protein YP_001514246.1 2962869 D 350688 CDS YP_001514247.1 158321740 5676274 2964262..2965362 1 NC_009922.1 TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: ctc:CTC02094 spore germination protein KB; spore germination protein 2965362 5676274 Clos_2720 Alkaliphilus oremlandii OhILAs spore germination protein YP_001514247.1 2964262 D 350688 CDS YP_001514248.1 158321741 5676275 complement(2965440..2966783) 1 NC_009922.1 PFAM: Heavy metal transport/detoxification protein; KEGG: cth:Cthe_1849 heavy metal transport/detoxification protein; heavy metal transport/detoxification protein 2966783 5676275 Clos_2721 Alkaliphilus oremlandii OhILAs heavy metal transport/detoxification protein YP_001514248.1 2965440 R 350688 CDS YP_001514249.1 158321742 5676276 complement(2966970..2968223) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bcl:ABC1939 acetyltransferase; N-acetyltransferase GCN5 2968223 5676276 Clos_2722 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001514249.1 2966970 R 350688 CDS YP_001514250.1 158321743 5676277 complement(2968268..2969122) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: btk:BT9727_2346 acetyltransferase, GNAT family; N-acetyltransferase GCN5 2969122 5676277 Clos_2723 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001514250.1 2968268 R 350688 CDS YP_001514251.1 158321744 5676278 2969441..2969806 1 NC_009922.1 PFAM: protein of unknown function DUF454; KEGG: cpr:CPR_0217 hypothetical protein; hypothetical protein 2969806 5676278 Clos_2724 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514251.1 2969441 D 350688 CDS YP_001514252.1 158321745 5676279 2969851..2970822 1 NC_009922.1 PFAM: Helix-turn-helix type 11 domain protein; KEGG: lic:LIC11146 putative transcriptional regulator (DeoR family); helix-turn-helix type 11 domain-containing protein 2970822 5676279 Clos_2725 Alkaliphilus oremlandii OhILAs helix-turn-helix type 11 domain-containing protein YP_001514252.1 2969851 D 350688 CDS YP_001514253.1 158321746 5676280 2970896..2971345 1 NC_009922.1 PFAM: transcription activator effector binding; KEGG: cdf:CD2419 AraC-family transcriptional regulator; transcription activator effector binding 2971345 5676280 Clos_2726 Alkaliphilus oremlandii OhILAs transcription activator effector binding YP_001514253.1 2970896 D 350688 CDS YP_001514254.1 158321747 5678216 2971839..2972258 1 NC_009922.1 KEGG: cpr:CPR_0632 hypothetical protein; hypothetical protein 2972258 5678216 Clos_2727 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514254.1 2971839 D 350688 CDS YP_001514255.1 158321748 5678217 complement(2972475..2973017) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY1041 hypothetical protein; N-acetyltransferase GCN5 2973017 5678217 Clos_2728 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001514255.1 2972475 R 350688 CDS YP_001514256.1 158321749 5678218 complement(2973049..2974023) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dsy:DSY0298 hypothetical protein; N-acetyltransferase GCN5 2974023 5678218 Clos_2729 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001514256.1 2973049 R 350688 CDS YP_001514257.1 158321750 5678219 complement(2974078..2974596) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bcl:ABC0271 hypothetical protein; N-acetyltransferase GCN5 2974596 5678219 Clos_2730 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001514257.1 2974078 R 350688 CDS YP_001514258.1 158321751 5678220 complement(2974708..2975262) 1 NC_009922.1 hypothetical protein 2975262 5678220 Clos_2731 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514258.1 2974708 R 350688 CDS YP_001514259.1 158321752 5678221 2975460..2975894 1 NC_009922.1 PFAM: regulatory protein AsnC/Lrp family; KEGG: bcl:ABC2712 transcriptional regulator, Lrp/AsnC family; AsnC family transcriptional regulator 2975894 5678221 Clos_2732 Alkaliphilus oremlandii OhILAs AsnC family transcriptional regulator YP_001514259.1 2975460 D 350688 CDS YP_001514260.1 158321753 5678222 2976038..2977321 1 NC_009922.1 TIGRFAM: kynureninase; PFAM: aminotransferase class V; KEGG: gtn:GTNG_3166 kynureninase; kynureninase 2977321 5678222 Clos_2733 Alkaliphilus oremlandii OhILAs kynureninase YP_001514260.1 2976038 D 350688 CDS YP_001514261.1 158321754 5678223 complement(2977456..2977791) 1 NC_009922.1 TIGRFAM: alkylphosphonate utilization operon protein PhnA; PFAM: PhnA protein; KEGG: bcz:pE33L466_0444 alkylphosphonate uptake protein; alkylphosphonate utilization operon protein PhnA 2977791 5678223 Clos_2734 Alkaliphilus oremlandii OhILAs alkylphosphonate utilization operon protein PhnA YP_001514261.1 2977456 R 350688 CDS YP_001514262.1 158321755 5678224 complement(2978029..2978394) 1 NC_009922.1 KEGG: btk:BT9727_2493 hypothetical protein; hypothetical protein 2978394 5678224 Clos_2735 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514262.1 2978029 R 350688 CDS YP_001514263.1 158321756 5678225 complement(2978485..2978958) 1 NC_009922.1 TIGRFAM: DNA binding domain, excisionase family; PFAM: regulatory protein MerR; KEGG: cbo:CBO2132 hypothetical protein; DNA binding domain-containing protein 2978958 5678225 Clos_2736 Alkaliphilus oremlandii OhILAs DNA binding domain-containing protein YP_001514263.1 2978485 R 350688 CDS YP_001514264.1 158321757 5678005 complement(2979182..2979556) 1 NC_009922.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mth:MTH758 S-D-lactoylglutathione methylglyoxal lyase; glyoxalase/bleomycin resistance protein/dioxygenase 2979556 5678005 Clos_2737 Alkaliphilus oremlandii OhILAs glyoxalase/bleomycin resistance protein/dioxygenase YP_001514264.1 2979182 R 350688 CDS YP_001514265.1 158321758 5678006 complement(2979640..2980689) 1 NC_009922.1 PFAM: beta-lactamase domain protein; KEGG: bca:BCE_2724 hypothetical protein; beta-lactamase domain-containing protein 2980689 5678006 Clos_2738 Alkaliphilus oremlandii OhILAs beta-lactamase domain-containing protein YP_001514265.1 2979640 R 350688 CDS YP_001514266.1 158321759 5678007 2980894..2982249 1 NC_009922.1 PFAM: Na+/H+ antiporter NhaC; KEGG: cac:CAC0744 Na+/H+ antiporter, ortholog YQKI B.subtilis; Na+/H+ antiporter NhaC 2982249 5678007 Clos_2739 Alkaliphilus oremlandii OhILAs Na+/H+ antiporter NhaC YP_001514266.1 2980894 D 350688 CDS YP_001514267.1 158321760 5678008 2982576..2984339 1 NC_009922.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2984339 argS 5678008 argS Alkaliphilus oremlandii OhILAs arginyl-tRNA synthetase YP_001514267.1 2982576 D 350688 CDS YP_001514268.1 158321761 5678009 2984586..2985281 1 NC_009922.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: cbo:CBO1023 hydrolase; HAD family hydrolase 2985281 5678009 Clos_2741 Alkaliphilus oremlandii OhILAs HAD family hydrolase YP_001514268.1 2984586 D 350688 CDS YP_001514269.1 158321762 5678010 complement(2985364..2986767) 1 NC_009922.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: nme:NMB1647 amino acid symporter, putative; amino acid carrier protein 2986767 5678010 Clos_2742 Alkaliphilus oremlandii OhILAs amino acid carrier protein YP_001514269.1 2985364 R 350688 CDS YP_001514270.1 158321763 5678011 complement(2987003..2987878) 1 NC_009922.1 KEGG: cbo:CBO3576 methionine aminopeptidase 2; TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; SEC-C motif domain protein; methionine aminopeptidase 2987878 5678011 Clos_2743 Alkaliphilus oremlandii OhILAs methionine aminopeptidase YP_001514270.1 2987003 R 350688 CDS YP_001514271.1 158321764 5678012 complement(2987924..2988295) 1 NC_009922.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbo:CBO3575 AraC-family transcriptional regulator; AraC family transcriptional regulator 2988295 5678012 Clos_2744 Alkaliphilus oremlandii OhILAs AraC family transcriptional regulator YP_001514271.1 2987924 R 350688 CDS YP_001514272.1 158321765 5678013 complement(2988479..2989354) 1 NC_009922.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: dsy:DSY1233 hypothetical protein; AraC family transcriptional regulator 2989354 5678013 Clos_2745 Alkaliphilus oremlandii OhILAs AraC family transcriptional regulator YP_001514272.1 2988479 R 350688 CDS YP_001514273.1 158321766 5678014 complement(2989468..2990694) 1 NC_009922.1 hypothetical protein 2990694 5678014 Clos_2746 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514273.1 2989468 R 350688 CDS YP_001514274.1 158321767 5678694 complement(2990957..2991850) 1 NC_009922.1 PFAM: protein of unknown function DUF6 transmembrane; Protein of unknown function DUF250; KEGG: bld:BLi00477 similar to proteins; RBL01685; hypothetical protein 2991850 5678694 Clos_2747 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514274.1 2990957 R 350688 CDS YP_001514275.1 158321768 5678695 complement(2991945..2992679) 1 NC_009922.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbo:CBO0623 AraC-family transcriptional regulator; AraC family transcriptional regulator 2992679 5678695 Clos_2748 Alkaliphilus oremlandii OhILAs AraC family transcriptional regulator YP_001514275.1 2991945 R 350688 CDS YP_001514276.1 158321769 5678696 complement(2992723..2993226) 1 NC_009922.1 PFAM: nitroreductase; KEGG: mta:Moth_1212 nitroreductase; nitroreductase 2993226 5678696 Clos_2749 Alkaliphilus oremlandii OhILAs nitroreductase YP_001514276.1 2992723 R 350688 CDS YP_001514277.1 158321770 5678697 complement(2993319..2994116) 1 NC_009922.1 KEGG: sma:SAV2861 ABC transporter integral membrane protein; hypothetical protein 2994116 5678697 Clos_2750 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514277.1 2993319 R 350688 CDS YP_001514278.1 158321771 5678698 complement(2994123..2995049) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sen:SACE_7260 putative ABC transporter ATP-binding subunit; ABC transporter 2995049 5678698 Clos_2751 Alkaliphilus oremlandii OhILAs ABC transporter YP_001514278.1 2994123 R 350688 CDS YP_001514279.1 158321772 5678699 complement(2995054..2995833) 1 NC_009922.1 PFAM: regulatory protein MerR; KEGG: lin:lin0530 hypothetical protein; MerR family transcriptional regulator 2995833 5678699 Clos_2752 Alkaliphilus oremlandii OhILAs MerR family transcriptional regulator YP_001514279.1 2995054 R 350688 CDS YP_001514280.1 158321773 5678700 complement(2996048..2996599) 1 NC_009922.1 PFAM: protein of unknown function DUF1697; KEGG: mca:MCA2327 hypothetical protein; hypothetical protein 2996599 5678700 Clos_2753 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514280.1 2996048 R 350688 CDS YP_001514281.1 158321774 5678701 complement(2996620..2997309) 1 NC_009922.1 hypothetical protein 2997309 5678701 Clos_2754 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514281.1 2996620 R 350688 CDS YP_001514282.1 158321775 5678702 complement(2998182..2999042) 1 NC_009922.1 PFAM: protein of unknown function DUF89; KEGG: pho:PH1575 hypothetical protein; hypothetical protein 2999042 5678702 Clos_2755 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514282.1 2998182 R 350688 CDS YP_001514283.1 158321776 5678703 complement(2999098..3000141) 1 NC_009922.1 KEGG: btk:BT9727_4351 hypothetical protein; hypothetical protein 3000141 5678703 Clos_2756 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514283.1 2999098 R 350688 CDS YP_001514284.1 158321777 5677611 complement(3000131..3000646) 1 NC_009922.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: cno:NT01CX_0693 RNA polymerase sigma-70 factor, ECF subfamily; ECF subfamily RNA polymerase sigma-24 factor 3000646 5677611 Clos_2757 Alkaliphilus oremlandii OhILAs ECF subfamily RNA polymerase sigma-24 factor YP_001514284.1 3000131 R 350688 CDS YP_001514285.1 158321778 5677612 complement(3000861..3001775) 1 NC_009922.1 TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: dsy:DSY1225 hypothetical protein; degV family protein 3001775 5677612 Clos_2758 Alkaliphilus oremlandii OhILAs degV family protein YP_001514285.1 3000861 R 350688 CDS YP_001514286.1 158321779 5677613 complement(3001861..3002808) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cpr:CPR_1153 probable acetyltransferase domain containing protein; N-acetyltransferase GCN5 3002808 5677613 Clos_2759 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001514286.1 3001861 R 350688 CDS YP_001514287.1 158321780 5677614 complement(3002853..3003623) 1 NC_009922.1 PFAM: regulatory protein LuxR; KEGG: cac:CAC0445 protein, containing LuxR family transcriptional regulator HTH domain; LuxR family transcriptional regulator 3003623 5677614 Clos_2760 Alkaliphilus oremlandii OhILAs LuxR family transcriptional regulator YP_001514287.1 3002853 R 350688 CDS YP_001514288.1 158321781 5677615 complement(3004044..3005123) 1 NC_009922.1 PFAM: metallophosphoesterase; KEGG: bca:BCE_2172 serine/threonine phosphatase, putative; metallophosphoesterase 3005123 5677615 Clos_2761 Alkaliphilus oremlandii OhILAs metallophosphoesterase YP_001514288.1 3004044 R 350688 CDS YP_001514289.1 158321782 5677616 complement(3005396..3006259) 1 NC_009922.1 PFAM: pentapeptide repeat protein; KEGG: cac:CAC0073 uncharacterized protein, ortholog of YYBG B.subtilis; pentapeptide repeat-containing protein 3006259 5677616 Clos_2762 Alkaliphilus oremlandii OhILAs pentapeptide repeat-containing protein YP_001514289.1 3005396 R 350688 CDS YP_001514290.1 158321783 5677617 complement(3006408..3007670) 1 NC_009922.1 hypothetical protein 3007670 5677617 Clos_2763 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514290.1 3006408 R 350688 CDS YP_001514291.1 158321784 5677618 complement(3007660..3008274) 1 NC_009922.1 TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: bsu:BG13019 RNA polymerase ECF-type sigma factor; ECF subfamily RNA polymerase sigma-24 factor 3008274 5677618 Clos_2764 Alkaliphilus oremlandii OhILAs ECF subfamily RNA polymerase sigma-24 factor YP_001514291.1 3007660 R 350688 CDS YP_001514292.1 158321785 5677619 complement(3008488..3009531) 1 NC_009922.1 PFAM: regulatory protein MerR; Methyltransferase type 11; Methyltransferase type 12; KEGG: cac:CAC2451 SoxR family transcriptional regulator fused to SAM-dependent methyltransferase; MerR family transcriptional regulator 3009531 5677619 Clos_2765 Alkaliphilus oremlandii OhILAs MerR family transcriptional regulator YP_001514292.1 3008488 R 350688 CDS YP_001514293.1 158321786 5677620 3009983..3010498 1 NC_009922.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 3010498 5677620 Clos_2766 Alkaliphilus oremlandii OhILAs RNA polymerase sigma factor YP_001514293.1 3009983 D 350688 CDS YP_001514294.1 158321787 5676193 3010515..3010835 1 NC_009922.1 hypothetical protein 3010835 5676193 Clos_2767 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514294.1 3010515 D 350688 CDS YP_001514295.1 158321788 5676194 3010838..3011509 1 NC_009922.1 KEGG: vvy:VVA1164 hypothetical protein; hypothetical protein 3011509 5676194 Clos_2768 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514295.1 3010838 D 350688 CDS YP_001514296.1 158321789 5676195 complement(3011657..3012007) 1 NC_009922.1 KEGG: bcl:ABC1987 hypothetical protein; hypothetical protein 3012007 5676195 Clos_2769 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514296.1 3011657 R 350688 CDS YP_001514297.1 158321790 5676196 3012170..3012985 1 NC_009922.1 hypothetical protein 3012985 5676196 Clos_2770 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514297.1 3012170 D 350688 CDS YP_001514298.1 158321791 5676197 complement(3013148..3014479) 1 NC_009922.1 PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ilo:IL0044 amidohydrolase family enzyme; amidohydrolase 3014479 5676197 Clos_2771 Alkaliphilus oremlandii OhILAs amidohydrolase YP_001514298.1 3013148 R 350688 CDS YP_001514299.1 158321792 5676198 complement(3014911..3015369) 1 NC_009922.1 KEGG: aau:AAur_1361 hypothetical protein; hypothetical protein 3015369 5676198 Clos_2772 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514299.1 3014911 R 350688 CDS YP_001514300.1 158321793 5676199 complement(3015374..3016216) 1 NC_009922.1 PFAM: regulatory protein MerR; transcription activator effector binding; KEGG: cdf:CD0616 MerR-family transcriptional regulator; MerR family transcriptional regulator 3016216 5676199 Clos_2773 Alkaliphilus oremlandii OhILAs MerR family transcriptional regulator YP_001514300.1 3015374 R 350688 CDS YP_001514301.1 158321794 5676200 complement(3016454..3017338) 1 NC_009922.1 PFAM: alpha/beta hydrolase fold; KEGG: btl:BALH_4420 hydrolase, alpha/beta fold family; alpha/beta hydrolase 3017338 5676200 Clos_2774 Alkaliphilus oremlandii OhILAs alpha/beta hydrolase YP_001514301.1 3016454 R 350688 CDS YP_001514302.1 158321795 5676201 complement(3017547..3018026) 1 NC_009922.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3018026 5676201 Clos_2775 Alkaliphilus oremlandii OhILAs rRNA large subunit methyltransferase YP_001514302.1 3017547 R 350688 CDS YP_001514303.1 158321796 5676202 complement(3018235..3018402) 1 NC_009922.1 KEGG: tte:TTE2682 hypothetical protein; hypothetical protein 3018402 5676202 Clos_2776 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514303.1 3018235 R 350688 CDS YP_001514304.1 158321797 5678170 complement(3018859..3020184) 1 NC_009922.1 PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; KEGG: cdf:CD3284 probable protease; 2-alkenal reductase 3020184 5678170 Clos_2777 Alkaliphilus oremlandii OhILAs 2-alkenal reductase YP_001514304.1 3018859 R 350688 CDS YP_001514305.1 158321798 5678171 complement(3020217..3021011) 1 NC_009922.1 PFAM: beta-lactamase domain protein; KEGG: cdf:CD3651 putative metallo-beta-lactamase superfamily protein; beta-lactamase domain-containing protein 3021011 5678171 Clos_2778 Alkaliphilus oremlandii OhILAs beta-lactamase domain-containing protein YP_001514305.1 3020217 R 350688 CDS YP_001514306.1 158321799 5678172 complement(3021064..3022326) 1 NC_009922.1 TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase); KEGG: cno:NT01CX_0948 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3022326 5678172 Clos_2779 Alkaliphilus oremlandii OhILAs UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001514306.1 3021064 R 350688 CDS YP_001514307.1 158321800 5678173 complement(3022721..3023620) 1 NC_009922.1 KEGG: tte:TTE2685 hypothetical protein; hypothetical protein 3023620 5678173 Clos_2780 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514307.1 3022721 R 350688 CDS YP_001514308.1 158321801 5678174 complement(3023636..3025099) 1 NC_009922.1 hypothetical protein 3025099 5678174 Clos_2781 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514308.1 3023636 R 350688 CDS YP_001514309.1 158321802 5678175 complement(3025118..3025624) 1 NC_009922.1 hypothetical protein 3025624 5678175 Clos_2782 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514309.1 3025118 R 350688 CDS YP_001514310.1 158321803 5678176 complement(3025715..3027538) 1 NC_009922.1 KEGG: tte:TTE2688 sensory transduction histidine kinases; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 3027538 5678176 Clos_2783 Alkaliphilus oremlandii OhILAs multi-sensor signal transduction histidine kinase YP_001514310.1 3025715 R 350688 CDS YP_001514311.1 158321804 5678177 complement(3027541..3028230) 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: csc:Csac_2559 two component transcriptional regulator, winged helix family; two component transcriptional regulator 3028230 5678177 Clos_2784 Alkaliphilus oremlandii OhILAs two component transcriptional regulator YP_001514311.1 3027541 R 350688 CDS YP_001514312.1 158321805 5678178 complement(3028306..3029112) 1 NC_009922.1 KEGG: tte:TTE2690 hypothetical protein; hypothetical protein 3029112 5678178 Clos_2785 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514312.1 3028306 R 350688 CDS YP_001514313.1 158321806 5678179 3029416..3030696 1 NC_009922.1 PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: oih:OB2375 intracellular alkaline serine proteinase; peptidase S8/S53 subtilisin kexin sedolisin 3030696 5678179 Clos_2786 Alkaliphilus oremlandii OhILAs peptidase S8/S53 subtilisin kexin sedolisin YP_001514313.1 3029416 D 350688 CDS YP_001514314.1 158321807 5676336 complement(3030813..3032021) 1 NC_009922.1 PFAM: EAL domain protein; Metal-dependent hydrolase HDOD; KEGG: dsy:DSY2436 hypothetical protein; diguanylate phosphodiesterase 3032021 5676336 Clos_2787 Alkaliphilus oremlandii OhILAs diguanylate phosphodiesterase YP_001514314.1 3030813 R 350688 CDS YP_001514315.1 158321808 5676337 complement(3032099..3033007) 1 NC_009922.1 TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: ctc:CTC01983 response regulator protein; diguanylate cyclase 3033007 5676337 Clos_2788 Alkaliphilus oremlandii OhILAs diguanylate cyclase YP_001514315.1 3032099 R 350688 CDS YP_001514316.1 158321809 5676338 complement(3033061..3034962) 1 NC_009922.1 PFAM: chemotaxis sensory transducer; KEGG: cbo:CBO0693 methyl-accepting chemotaxis protein; methyl-accepting chemotaxis sensory transducer 3034962 5676338 Clos_2789 Alkaliphilus oremlandii OhILAs methyl-accepting chemotaxis sensory transducer YP_001514316.1 3033061 R 350688 CDS YP_001514317.1 158321810 5676339 complement(3035200..3036321) 1 NC_009922.1 PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dsy:DSY0459 hypothetical protein; response regulator receiver/SARP domain-containing protein 3036321 5676339 Clos_2790 Alkaliphilus oremlandii OhILAs response regulator receiver/SARP domain-containing protein YP_001514317.1 3035200 R 350688 CDS YP_001514318.1 158321811 5676340 complement(3036302..3039409) 1 NC_009922.1 PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; glycoside hydrolase family 2 sugar binding; histidine kinase internal region; KEGG: bld:BLi00599 YwpD; integral membrane sensor hybrid histidine kinase 3039409 5676340 Clos_2791 Alkaliphilus oremlandii OhILAs integral membrane sensor hybrid histidine kinase YP_001514318.1 3036302 R 350688 CDS YP_001514319.1 158321812 5676341 complement(3039669..3041204) 1 NC_009922.1 PFAM: Peptidoglycan-binding LysM; peptidase M23B; G5 domain protein; KEGG: tte:TTE2691 membrane proteins related to metalloendopeptidase; peptidase M23B 3041204 5676341 Clos_2792 Alkaliphilus oremlandii OhILAs peptidase M23B YP_001514319.1 3039669 R 350688 CDS YP_001514320.1 158321813 5676342 complement(3041425..3042927) 1 NC_009922.1 PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: cdf:CD3652 putative peptidase; peptidase M1 membrane alanine aminopeptidase 3042927 5676342 Clos_2793 Alkaliphilus oremlandii OhILAs peptidase M1 membrane alanine aminopeptidase YP_001514320.1 3041425 R 350688 CDS YP_001514321.1 158321814 5676343 3043095..3044189 1 NC_009922.1 TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: cdf:CD3653 hypothetical protein; primosome subunit DnaD 3044189 5676343 Clos_2794 Alkaliphilus oremlandii OhILAs primosome subunit DnaD YP_001514321.1 3043095 D 350688 CDS YP_001514322.1 158321815 5676344 3044202..3045182 1 NC_009922.1 acts to load the DnaB helicase onto the initiation site during DNA replication; DNA replication protein DnaC 3045182 5676344 Clos_2795 Alkaliphilus oremlandii OhILAs DNA replication protein DnaC YP_001514322.1 3044202 D 350688 CDS YP_001514323.1 158321816 5676345 complement(3045350..3045952) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: rrs:RoseRS_1262 GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3045952 5676345 Clos_2796 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001514323.1 3045350 R 350688 CDS YP_001514324.1 158321817 5677951 complement(3045971..3047314) 1 NC_009922.1 TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; KEGG: cdf:CD3657 replicative DNA helicase; replicative DNA helicase 3047314 5677951 Clos_2797 Alkaliphilus oremlandii OhILAs replicative DNA helicase YP_001514324.1 3045971 R 350688 CDS YP_001514325.1 158321818 5677952 complement(3047403..3047849) 1 NC_009922.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 3047849 rplI 5677952 rplI Alkaliphilus oremlandii OhILAs 50S ribosomal protein L9 YP_001514325.1 3047403 R 350688 CDS YP_001514326.1 158321819 5677953 complement(3047846..3049858) 1 NC_009922.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: cth:Cthe_2258 phosphoesterase, RecJ-like protein; phosphoesterase domain-containing protein 3049858 5677953 Clos_2799 Alkaliphilus oremlandii OhILAs phosphoesterase domain-containing protein YP_001514326.1 3047846 R 350688 CDS YP_001514327.1 158321820 5677954 complement(3049884..3050816) 1 NC_009922.1 KEGG: cdf:CD3660 hypothetical protein; membrane protein-like protein 3050816 5677954 Clos_2800 Alkaliphilus oremlandii OhILAs membrane protein-like protein YP_001514327.1 3049884 R 350688 CDS YP_001514328.1 158321821 5677955 complement(3050863..3051192) 1 NC_009922.1 KEGG: cdf:CD3661 hypothetical protein; hypothetical protein 3051192 5677955 Clos_2801 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514328.1 3050863 R 350688 CDS YP_001514329.1 158321822 5677956 complement(3051484..3051750) 1 NC_009922.1 PFAM: sigmaK-factor processing regulatory BofA; KEGG: cth:Cthe_2389 sigmaK-factor processing regulatory BofA; sigmaK-factor processing regulatory BofA 3051750 5677956 Clos_2802 Alkaliphilus oremlandii OhILAs sigmaK-factor processing regulatory BofA YP_001514329.1 3051484 R 350688 CDS YP_001514330.1 158321823 5677957 complement(3051840..3052142) 1 NC_009922.1 KEGG: mta:Moth_0030 hypothetical protein; hypothetical protein 3052142 5677957 Clos_2803 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514330.1 3051840 R 350688 CDS YP_001514331.1 158321824 5677958 complement(3052276..3053604) 1 NC_009922.1 PFAM: PhoH family protein; SMART: Nucleotide binding protein PINc; KEGG: gtn:GTNG_0940 PhoH protein; PhoH family protein 3053604 5677958 Clos_2804 Alkaliphilus oremlandii OhILAs PhoH family protein YP_001514331.1 3052276 R 350688 CDS YP_001514332.1 158321825 5677959 complement(3053770..3054183) 1 NC_009922.1 TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: cbo:CBO0518 oxygen binding protein; hemerythrin-like metal-binding protein 3054183 5677959 Clos_2805 Alkaliphilus oremlandii OhILAs hemerythrin-like metal-binding protein YP_001514332.1 3053770 R 350688 CDS YP_001514333.1 158321826 5677960 3054425..3055015 1 NC_009922.1 PFAM: Rubrerythrin; KEGG: ctc:CTC02638 rubrerythrin; rubrerythrin 3055015 5677960 Clos_2806 Alkaliphilus oremlandii OhILAs rubrerythrin YP_001514333.1 3054425 D 350688 CDS YP_001514334.1 158321827 5678022 complement(3055371..3056150) 1 NC_009922.1 PFAM: heat shock protein DnaJ domain protein; KEGG: ava:Ava_0379 heat shock protein DnaJ; heat shock protein DnaJ domain-containing protein 3056150 5678022 Clos_2807 Alkaliphilus oremlandii OhILAs heat shock protein DnaJ domain-containing protein YP_001514334.1 3055371 R 350688 CDS YP_001514335.1 158321828 5678023 complement(3056578..3057405) 1 NC_009922.1 PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bha:BH0989 transcriptional regulator (AraC/XylS family); AraC family transcriptional regulator 3057405 5678023 Clos_2808 Alkaliphilus oremlandii OhILAs AraC family transcriptional regulator YP_001514335.1 3056578 R 350688 CDS YP_001514336.1 158321829 5678024 complement(3057426..3058211) 1 NC_009922.1 PFAM: putative esterase; KEGG: bld:BLi00408 hypothetical protein; putative esterase 3058211 5678024 Clos_2809 Alkaliphilus oremlandii OhILAs putative esterase YP_001514336.1 3057426 R 350688 CDS YP_001514337.1 158321830 5678025 complement(3058267..3059052) 1 NC_009922.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bca:BCE_3768 iron compound ABC transporter, ATP-binding protein; ABC transporter 3059052 5678025 Clos_2810 Alkaliphilus oremlandii OhILAs ABC transporter YP_001514337.1 3058267 R 350688 CDS YP_001514338.1 158321831 5678026 complement(3059073..3060095) 1 NC_009922.1 PFAM: transport system permease protein; KEGG: bce:BC3736 iron(III) dicitrate transport system permease protein fecC; transport system permease protein 3060095 5678026 Clos_2811 Alkaliphilus oremlandii OhILAs transport system permease protein YP_001514338.1 3059073 R 350688 CDS YP_001514339.1 158321832 5678027 complement(3060088..3061095) 1 NC_009922.1 PFAM: transport system permease protein; KEGG: bcz:BCZK3494 iron(III) dicitrate transport system permease; transport system permease protein 3061095 5678027 Clos_2812 Alkaliphilus oremlandii OhILAs transport system permease protein YP_001514339.1 3060088 R 350688 CDS YP_001514340.1 158321833 5678028 complement(3061121..3062110) 1 NC_009922.1 PFAM: periplasmic binding protein; KEGG: bce:BC3738 iron(III) dicitrate-binding protein; periplasmic binding protein 3062110 5678028 Clos_2813 Alkaliphilus oremlandii OhILAs periplasmic binding protein YP_001514340.1 3061121 R 350688 CDS YP_001514341.1 158321834 5678029 3062297..3063607 1 NC_009922.1 PFAM: AAA-4 family protein; KEGG: dsy:DSY4828 hypothetical protein; putative transcriptional regulator 3063607 5678029 Clos_2814 Alkaliphilus oremlandii OhILAs putative transcriptional regulator YP_001514341.1 3062297 D 350688 CDS YP_001514342.1 158321835 5678030 complement(3063636..3064706) 1 NC_009922.1 KEGG: sfu:Sfum_3494 hypothetical protein; hypothetical protein 3064706 5678030 Clos_2815 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514342.1 3063636 R 350688 CDS YP_001514343.1 158321836 5678031 complement(3064693..3066129) 1 NC_009922.1 PFAM: polysaccharide deacetylase; KEGG: tte:TTE0866 predicted xylanase/chitin deacetylase; polysaccharide deacetylase 3066129 5678031 Clos_2816 Alkaliphilus oremlandii OhILAs polysaccharide deacetylase YP_001514343.1 3064693 R 350688 CDS YP_001514344.1 158321837 5677856 complement(3066258..3066491) 1 NC_009922.1 KEGG: dsy:DSY4674 hypothetical protein; hypothetical protein 3066491 5677856 Clos_2817 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514344.1 3066258 R 350688 CDS YP_001514345.1 158321838 5677857 complement(3066549..3067553) 1 NC_009922.1 PFAM: permease; KEGG: dsy:DSY4678 hypothetical protein; permease 3067553 5677857 Clos_2818 Alkaliphilus oremlandii OhILAs permease YP_001514345.1 3066549 R 350688 CDS YP_001514346.1 158321839 5677858 complement(3067581..3067982) 1 NC_009922.1 PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cth:Cthe_1110 protein tyrosine phosphatase; protein tyrosine phosphatase 3067982 5677858 Clos_2819 Alkaliphilus oremlandii OhILAs protein tyrosine phosphatase YP_001514346.1 3067581 R 350688 CDS YP_001514347.1 158321840 5677859 complement(3068010..3068354) 1 NC_009922.1 PFAM: regulatory protein ArsR; KEGG: cbo:CBO0753 arsenical resistance operon repressor; ArsR family transcriptional regulator 3068354 5677859 Clos_2820 Alkaliphilus oremlandii OhILAs ArsR family transcriptional regulator YP_001514347.1 3068010 R 350688 CDS YP_001514348.1 158321841 5677860 3068504..3068866 1 NC_009922.1 hypothetical protein 3068866 5677860 Clos_2821 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514348.1 3068504 D 350688 CDS YP_001514349.1 158321842 5677861 3069206..3070657 1 NC_009922.1 PFAM: Na+/H+ antiporter NhaC; KEGG: hma:rrnAC0229 Na+/H+ antiporter; Na+/H+ antiporter NhaC 3070657 5677861 Clos_2822 Alkaliphilus oremlandii OhILAs Na+/H+ antiporter NhaC YP_001514349.1 3069206 D 350688 CDS YP_001514350.1 158321843 5677862 complement(3070754..3072172) 1 NC_009922.1 PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cdf:CD0444 putative pyridoxal-phosphate dependent enzyme; pyridoxal-5'-phosphate-dependent protein beta subunit 3072172 5677862 Clos_2823 Alkaliphilus oremlandii OhILAs pyridoxal-5'-phosphate-dependent protein beta subunit YP_001514350.1 3070754 R 350688 CDS YP_001514351.1 158321844 5677863 complement(3072192..3072494) 1 NC_009922.1 KEGG: tte:TTE1235 hypothetical protein; hypothetical protein 3072494 5677863 Clos_2824 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514351.1 3072192 R 350688 CDS YP_001514352.1 158321845 5677864 complement(3072584..3073957) 1 NC_009922.1 PFAM: response regulator receiver; sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: cdf:CD1739 two-component response regulator; two component, sigma54 specific, Fis family transcriptional regulator 3073957 5677864 Clos_2825 Alkaliphilus oremlandii OhILAs two component, sigma54 specific, Fis family transcriptional regulator YP_001514352.1 3072584 R 350688 CDS YP_001514353.1 158321846 5677865 complement(3073960..3075969) 1 NC_009922.1 KEGG: cdf:CD1738 two-component sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: extracellular solute-binding protein family 3; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: PAS domain containing protein; multi-sensor signal transduction histidine kinase 3075969 5677865 Clos_2826 Alkaliphilus oremlandii OhILAs multi-sensor signal transduction histidine kinase YP_001514353.1 3073960 R 350688 CDS YP_001514354.1 158321847 5677672 complement(3076145..3078166) 1 NC_009922.1 PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: bce:BC0192 acylamino-acid-releasing enzyme; peptidase S9 prolyl oligopeptidase 3078166 5677672 Clos_2827 Alkaliphilus oremlandii OhILAs peptidase S9 prolyl oligopeptidase YP_001514354.1 3076145 R 350688 CDS YP_001514355.1 158321848 5677673 3078646..3079092 1 NC_009922.1 KEGG: mma:MM3347 hypothetical protein; hypothetical protein 3079092 5677673 Clos_2828 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514355.1 3078646 D 350688 CDS YP_001514356.1 158321849 5677674 complement(3079110..3080180) 1 NC_009922.1 KEGG: cth:Cthe_0744 copper amine oxidase-like protein; hypothetical protein 3080180 5677674 Clos_2829 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514356.1 3079110 R 350688 CDS YP_001514357.1 158321850 5677675 3080598..3080813 1 NC_009922.1 hypothetical protein 3080813 5677675 Clos_2830 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514357.1 3080598 D 350688 CDS YP_001514358.1 158321851 5677676 complement(3081238..3081831) 1 NC_009922.1 hypothetical protein 3081831 5677676 Clos_2831 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514358.1 3081238 R 350688 CDS YP_001514359.1 158321852 5677677 complement(3081841..3082206) 1 NC_009922.1 PFAM: LytTr DNA-binding region; KEGG: mta:Moth_1621 transcriptional regulator, LytR/AlgR family; response regulator receiver protein 3082206 5677677 Clos_2832 Alkaliphilus oremlandii OhILAs response regulator receiver protein YP_001514359.1 3081841 R 350688 CDS YP_001514360.1 158321853 5677678 3082381..3083148 1 NC_009922.1 hypothetical protein 3083148 5677678 Clos_2833 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514360.1 3082381 D 350688 CDS YP_001514361.1 158321854 5677681 complement(3085266..3087092) 1 NC_009922.1 TIGRFAM: glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: glutamine amidotransferase class-II; sugar isomerase (SIS); KEGG: tte:TTE2190 glucosamine--fructose-6-phosphate aminotransferase (isomerizing); glucosamine--fructose-6-phosphate aminotransferase 3087092 5677681 Clos_2836 Alkaliphilus oremlandii OhILAs glucosamine--fructose-6-phosphate aminotransferase YP_001514361.1 3085266 R 350688 CDS YP_001514362.1 158321855 5676241 complement(3087645..3087863) 1 NC_009922.1 KEGG: tte:TTE2173 hypothetical protein; hypothetical protein 3087863 5676241 Clos_2837 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514362.1 3087645 R 350688 CDS YP_001514363.1 158321856 5676242 3088034..3088411 1 NC_009922.1 PFAM: helix-turn-helix domain protein; KEGG: tte:TTE2174 predicted transcriptional regulator; XRE family transcriptional regulator 3088411 5676242 Clos_2838 Alkaliphilus oremlandii OhILAs XRE family transcriptional regulator YP_001514363.1 3088034 D 350688 CDS YP_001514364.1 158321857 5676243 complement(3088543..3088911) 1 NC_009922.1 KEGG: mta:Moth_1682 hypothetical protein; hypothetical protein 3088911 5676243 Clos_2839 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514364.1 3088543 R 350688 CDS YP_001514365.1 158321858 5676244 complement(3088936..3089349) 1 NC_009922.1 PFAM: NUDIX hydrolase; KEGG: lwe:lwe1264 MutT/NUDIX family hydrolase; NUDIX hydrolase 3089349 5676244 Clos_2840 Alkaliphilus oremlandii OhILAs NUDIX hydrolase YP_001514365.1 3088936 R 350688 CDS YP_001514366.1 158321859 5676245 complement(3089368..3090276) 1 NC_009922.1 PFAM: Auxin Efflux Carrier; KEGG: cbo:CBO2572 transporter protein; auxin efflux carrier 3090276 5676245 Clos_2841 Alkaliphilus oremlandii OhILAs auxin efflux carrier YP_001514366.1 3089368 R 350688 CDS YP_001514367.1 158321860 5676246 complement(3090305..3090772) 1 NC_009922.1 PFAM: Domain of unknown function DUF1905; KEGG: rci:RCIX849 hypothetical protein; hypothetical protein 3090772 5676246 Clos_2842 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514367.1 3090305 R 350688 CDS YP_001514368.1 158321861 5676247 complement(3090815..3091144) 1 NC_009922.1 KEGG: bha:BH2268 hypothetical protein; hypothetical protein 3091144 5676247 Clos_2843 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514368.1 3090815 R 350688 CDS YP_001514369.1 158321862 5676248 complement(3091206..3091667) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bld:BLi00324 YvbK; N-acetyltransferase GCN5 3091667 5676248 Clos_2844 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001514369.1 3091206 R 350688 CDS YP_001514370.1 158321863 5676249 3092121..3094409 1 NC_009922.1 PFAM: Peptidoglycan-binding domain 1 protein; KEGG: lca:LSEI_2197 hypothetical protein; peptidoglycan binding domain-containing protein 3094409 5676249 Clos_2845 Alkaliphilus oremlandii OhILAs peptidoglycan binding domain-containing protein YP_001514370.1 3092121 D 350688 CDS YP_001514371.1 158321864 5676250 complement(3094511..3095389) 1 NC_009922.1 PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: bce:BC4832 transcriptional regulator, AraC family; AraC family transcriptional regulator 3095389 5676250 Clos_2846 Alkaliphilus oremlandii OhILAs AraC family transcriptional regulator YP_001514371.1 3094511 R 350688 CDS YP_001514372.1 158321865 5676251 complement(3095479..3095934) 1 NC_009922.1 PFAM: GCN5-related N-acetyltransferase; KEGG: bca:BCE_3382 acetyltransferase, GNAT family; N-acetyltransferase GCN5 3095934 5676251 Clos_2847 Alkaliphilus oremlandii OhILAs N-acetyltransferase GCN5 YP_001514372.1 3095479 R 350688 CDS YP_001514373.1 158321866 5678625 complement(3095991..3096413) 1 NC_009922.1 hypothetical protein 3096413 5678625 Clos_2848 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514373.1 3095991 R 350688 CDS YP_001514374.1 158321867 5678626 complement(3096578..3097141) 1 NC_009922.1 KEGG: pgi:PG1407 nitroimidazole resistance protein, putative; nitroimidazole resistance protein 3097141 5678626 Clos_2849 Alkaliphilus oremlandii OhILAs nitroimidazole resistance protein YP_001514374.1 3096578 R 350688 CDS YP_001514375.1 158321868 5678627 3097431..3098501 1 NC_009922.1 KEGG: cth:Cthe_2277 hypothetical protein; hypothetical protein 3098501 5678627 Clos_2850 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514375.1 3097431 D 350688 CDS YP_001514376.1 158321869 5678628 complement(3098680..3099561) 1 NC_009922.1 PFAM: ribosomal RNA adenine methylase transferase; KEGG: spi:MGAS10750_Spy1703 rRNA adenine N-6-methyltransferase; rRNA (adenine-N(6)-)-methyltransferase 3099561 5678628 Clos_2851 Alkaliphilus oremlandii OhILAs rRNA (adenine-N(6)-)-methyltransferase YP_001514376.1 3098680 R 350688 CDS YP_001514377.1 158321870 5678629 complement(3100389..3100868) 1 NC_009922.1 PFAM: NUDIX hydrolase; KEGG: mac:MA1648 MutT/NUDIX family protein; NUDIX hydrolase 3100868 5678629 Clos_2852 Alkaliphilus oremlandii OhILAs NUDIX hydrolase YP_001514377.1 3100389 R 350688 CDS YP_001514378.1 158321871 5678630 complement(3100956..3101387) 1 NC_009922.1 PFAM: protein of unknown function DUF606; KEGG: ctc:CTC00140 hypothetical protein; hypothetical protein 3101387 5678630 Clos_2853 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514378.1 3100956 R 350688 CDS YP_001514379.1 158321872 5678631 complement(3101569..3102168) 1 NC_009922.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 3102168 recR 5678631 recR Alkaliphilus oremlandii OhILAs recombination protein RecR YP_001514379.1 3101569 R 350688 CDS YP_001514380.1 158321873 5678632 complement(3102203..3102547) 1 NC_009922.1 PFAM: conserved hypothetical protein; KEGG: cno:NT01CX_0824 conserved hypothetical protein TIGR00103; hypothetical protein 3102547 5678632 Clos_2855 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514380.1 3102203 R 350688 CDS YP_001514381.1 158321874 5678633 complement(3102581..3104272) 1 NC_009922.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 3104272 5678633 Clos_2856 Alkaliphilus oremlandii OhILAs DNA polymerase III subunits gamma and tau YP_001514381.1 3102581 R 350688 CDS YP_001514382.1 158321875 5678634 complement(3104356..3105483) 1 NC_009922.1 KEGG: cth:Cthe_2711 hypothetical protein; hypothetical protein 3105483 5678634 Clos_2857 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514382.1 3104356 R 350688 CDS YP_001514383.1 158321876 5678114 3105744..3106337 1 NC_009922.1 PFAM: protein of unknown function DUF1256; KEGG: cth:Cthe_2165 protein of unknown function DUF1256; hypothetical protein 3106337 5678114 Clos_2858 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514383.1 3105744 D 350688 CDS YP_001514384.1 158321877 5678115 complement(3106495..3107262) 1 NC_009922.1 PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: cdf:CD1627 putative D-alanyl-D-alanine carboxypeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin 3107262 5678115 Clos_2859 Alkaliphilus oremlandii OhILAs peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin YP_001514384.1 3106495 R 350688 CDS YP_001514385.1 158321878 5678116 complement(3107266..3108315) 1 NC_009922.1 KEGG: cdf:CD1626 putative D-alanine:D-alanine ligase (putative vancomycin/teicoplanin A-type resistance protein); TIGRFAM: D-alanine--D-alanine ligase; PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; D-alanine--D-alanine ligase domain protein; D-alanine--D-alanine ligase 3108315 5678116 Clos_2860 Alkaliphilus oremlandii OhILAs D-alanine--D-alanine ligase YP_001514385.1 3107266 R 350688 CDS YP_001514386.1 158321879 5678117 complement(3108331..3109146) 1 NC_009922.1 PFAM: VanW family protein; KEGG: efa:EF2296 vancomycin B-type resistance protein VanW; VanW family protein 3109146 5678117 Clos_2861 Alkaliphilus oremlandii OhILAs VanW family protein YP_001514386.1 3108331 R 350688 CDS YP_001514387.1 158321880 5678118 3109581..3110234 1 NC_009922.1 hypothetical protein 3110234 5678118 Clos_2862 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514387.1 3109581 D 350688 CDS YP_001514388.1 158321881 5678119 complement(3110684..3110944) 1 NC_009922.1 KEGG: cth:Cthe_0718 hypothetical protein; hypothetical protein 3110944 5678119 Clos_2863 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514388.1 3110684 R 350688 CDS YP_001514389.1 158321882 5678120 complement(3111040..3111921) 1 NC_009922.1 PFAM: diacylglycerol kinase catalytic region; KEGG: tte:TTE2787 hypothetical protein; diacylglycerol kinase catalytic subunit 3111921 5678120 Clos_2864 Alkaliphilus oremlandii OhILAs diacylglycerol kinase catalytic subunit YP_001514389.1 3111040 R 350688 CDS YP_001514390.1 158321883 5678121 complement(3111931..3112479) 1 NC_009922.1 KEGG: cno:NT01CX_0879 hypothetical protein; hypothetical protein 3112479 5678121 Clos_2865 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514390.1 3111931 R 350688 CDS YP_001514391.1 158321884 5678122 complement(3112710..3113852) 1 NC_009922.1 TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: cdf:CD3670 putative selenocysteine lyase; cysteine desulfurase 3113852 5678122 Clos_2866 Alkaliphilus oremlandii OhILAs cysteine desulfurase YP_001514391.1 3112710 R 350688 CDS YP_001514392.1 158321885 5678123 complement(3113874..3114749) 1 NC_009922.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: tte:TTE2790 predicted Transcriptional regulator; parB-like partition protein 3114749 5678123 Clos_2867 Alkaliphilus oremlandii OhILAs parB-like partition protein YP_001514392.1 3113874 R 350688 CDS YP_001514393.1 158321886 5678089 complement(3114750..3115523) 1 NC_009922.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cdf:CD3672 sporulation initiation inhibitor; cobyrinic acid ac-diamide synthase 3115523 5678089 Clos_2868 Alkaliphilus oremlandii OhILAs cobyrinic acid ac-diamide synthase YP_001514393.1 3114750 R 350688 CDS YP_001514394.1 158321887 5678090 complement(3115715..3116512) 1 NC_009922.1 TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: cdf:CD3673 putative stage 0 sporulation protein; parB-like partition protein 3116512 5678090 Clos_2869 Alkaliphilus oremlandii OhILAs parB-like partition protein YP_001514394.1 3115715 R 350688 CDS YP_001514395.1 158321888 5678091 complement(3116643..3117362) 1 NC_009922.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 3117362 gidB 5678091 gidB Alkaliphilus oremlandii OhILAs 16S rRNA methyltransferase GidB YP_001514395.1 3116643 R 350688 CDS YP_001514396.1 158321889 5678092 complement(3117362..3119254) 1 NC_009922.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 3119254 5678092 Clos_2871 Alkaliphilus oremlandii OhILAs tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001514396.1 3117362 R 350688 CDS YP_001514397.1 158321890 5678093 complement(3119448..3120833) 1 NC_009922.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 3120833 trmE 5678093 trmE Alkaliphilus oremlandii OhILAs tRNA modification GTPase TrmE YP_001514397.1 3119448 R 350688 CDS YP_001514398.1 158321891 5678094 complement(3120928..3121548) 1 NC_009922.1 PFAM: single-stranded nucleic acid binding R3H domain protein; KH type 1 domain protein; KEGG: cbo:CBO3644 SpoIIIJ associated protein; single-stranded nucleic acid binding R3H domain-containing protein 3121548 5678094 Clos_2873 Alkaliphilus oremlandii OhILAs single-stranded nucleic acid binding R3H domain-containing protein YP_001514398.1 3120928 R 350688 CDS YP_001514399.1 158321892 5678095 complement(3121550..3122212) 1 NC_009922.1 PFAM: 60 kDa inner membrane insertion protein; KEGG: cdf:CD3678 putative sporulation membrane protein; 60 kDa inner membrane insertion protein 3122212 5678095 Clos_2874 Alkaliphilus oremlandii OhILAs 60 kDa inner membrane insertion protein YP_001514399.1 3121550 R 350688 CDS YP_001514400.1 158321893 5678096 complement(3122243..3122452) 1 NC_009922.1 PFAM: protein of unknown function DUF37; KEGG: cbo:CBO3646 hypothetical protein; hypothetical protein 3122452 5678096 Clos_2875 Alkaliphilus oremlandii OhILAs hypothetical protein YP_001514400.1 3122243 R 350688 CDS YP_001514401.1 158321894 5678097 complement(3122465..3122809) 1 NC_009922.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 3122809 rnpA 5678097 rnpA Alkaliphilus oremlandii OhILAs ribonuclease P YP_001514401.1 3122465 R 350688 CDS YP_001514402.1 158321895 5678098 complement(3122862..3122996) 1 NC_009922.1 in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 3122996 rpmH 5678098 rpmH Alkaliphilus oremlandii OhILAs 50S ribosomal protein L34 YP_001514402.1 3122862 R 350688 CDS