-- dump date 20140618_205224 -- class Genbank::Gene -- table gene_note -- id note 4638632 amidase domain protein; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01425 4640665 inorganic pyrophosphatase; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00719 4640194 ABC transporter substrate-binding protein, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to RF:ZP_00412030.1; match to protein family HMM PF01547 4638605 haloacid dehalogenase-like hydrolase; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 4638120 drug resistance transporter, EmrB/QacA subfamily; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 4641222 C50 carotenoid epsilon cyclase; this gene contains a frame shift which is not the result of sequencing error 4638019 gluconate dehydrogenase; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00732 4640593 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4641388 transcriptional regulator, AraC family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:CAD44484.1 4640657 iron(III) dicitrate ABC transporter, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by similarity to GB:BAB80516.1; match to protein family HMM PF01497 4639329 NAD-glutamate dehydrogenase; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF05088 4640309 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440; match to protein family HMM PF02909 4638005 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4640511 transcriptional regulator, IclR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01614 4640031 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4640143 inulin fructotransferase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:BAB20662.1; match to protein family HMM TIGR01409 4637897 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4637580 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4638218 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4638893 two-component system sensor histidine kinase; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 4640115 PEP-utilizing enzyme, interruption-N terminus domain; identified by match to protein family HMM PF02896; match to protein family HMM PF06965 4639568 PEP-utilizing enzyme, interuption-C terminus; identified by match to protein family HMM PF02896 4638146 oxidoreductase family, NAD-binding Rossmann fold domain protein; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01408; match to protein family HMM PF02894 4637621 conserved hypothetical protein; this gene contains a frame shift which is not the result of sequencing error 4639943 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4638940 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4637506 IS256 family transposase, truncation 4639572 adenylate kinase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to SP:P27142; similarity to SP:P33107 4637454 This gene is disrupted by the insertion of an IS element.; Tyramine oxidase, interruption-C 4639676 This gene is disrupted by the insertion of an IS element.; Tyramine oxidase, interruption-N 4641082 IS110 family transposase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by match to protein family HMM PF02371 4637808 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4639643 oxidoreductase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P08159 4641470 conserved hypothetical protein; this gene contains a premature stop which is not the result of sequencing error 4640919 ribosomal protein S2; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011 4638715 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4638203 molybdopterin biosynthesis protein (moaB); this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177 4637319 membrane protein. authentic frameshift; this gene contains a frame shift which is not the result of sequencing error 4638359 carboxylesterase; this gene contains a frame shift which is not the result of sequencing error 4638160 ABC transporter ATP-binding protein CydD; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00005; match to protein family HMM PF00664 4640438 riboflavin biosynthesis protein ribA, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P71684 4638372 conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAS20030.1 4639860 nitrilase; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00795 4637834 amidohydrolase family protein; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01979; match to protein family HMM PF07969 4639479 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4639212 alpha-ketoglutarate-dependent taurine dioxygenase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P37610; match to protein family HMM PF02668 4639919 tetracycline repressor protein (TetR family); this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440; match to protein family HMM PF02909 4640500 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4637767 3-demethylubiquinone-9 3-methyltransferase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAM30197.1; match to protein family HMM PF06983 4639201 vanillate O-demethylase oxygenase subunit; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00355 4638772 protein-export membrane protein SecF; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF02355 4640476 peptidyl-dipeptidase dcp, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P24171; match to protein family HMM PF01432 4638173 conserved hypothetical protein; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4641422 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4640116 signal peptidase I; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 4638749 signal peptidase I; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 4638317 ATP synthase delta chain (atpH); this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145 4640983 DeoR-family transcriptional regulator, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:BAC74247.1 4641053 conserved hypothetical protein; this gene contains a frame shift which is not the result of sequencing error 4637956 NAD-glutamate dehydrogenase; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF05088 4641086 uroporphyrinogen-III synthase; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF02602 4637853 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4640845 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF02401; match to protein family HMM TIGR00216 4638172 drug resistance transporter, EmrB/QacA subfamily; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 4639601 oxidoreductase, aldo/keto reductase family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00248 4637323 beta-galactosidase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAQ19029.1 4637998 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4639829 nitrite reductase; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01077; match to protein family HMM PF03460 4639549 pyruvate dehydrogenase E1 component, alpha subunit; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00676 4638489 This gene is disrupted by the insertion of an IS element.; acyltransferase family protein, interruption-N; identified by similarity to GB:CAC42211.1; match to protein family HMM PF01757 4639507 This gene is disrupted by the insertion of an IS element.; acyltransferase family protein, interruption-C 4637836 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4639115 pepQ-like2 4639890 alkanal monooxygenase (FMN-linked); this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00296 4640287 cystathionine beta-synthase; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00291 4639628 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4639414 dnaJ domain chaperone protein; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00226; match to protein family HMM PF01556 4639627 co-chaperone GrpE; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01025 4637318 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4640450 amine oxidase (copper-containing); this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P46881; match to protein family HMM PF01179; match to protein family HMM PF02727; match to protein family HMM PF02728 4639528 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4638739 oxidoreductase, short chain dehydrogenase/reductase family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00106 4640440 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4639049 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4638622 oxidoreductase, short chain dehydrogenase/reductase family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 4637545 3,4-dihydroxyphenylacetate 2,3-dioxygenase; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00903; match to protein family HMM TIGR02295 4641007 transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4638637 hydrolase, carbon-nitrogen family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00795 4639365 tetracycline repressor protein (TetR family); this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440; match to protein family HMM PF02909 4637809 NAD(P) transhydrogenase alpha subunit, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P07001; match to protein family HMM PF01262; match to protein family HMM PF05222 4639352 benzoate MFS transporter; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00083; match to protein family HMM PF07690 4639372 bifunctional monooxygenase/oxidoreductase; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00724; match to protein family HMM PF01494 4638667 3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00561 4641014 heavy metal-associated domain protein; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00403 4639113 thioredoxin; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00085; match to protein family HMM PF00462; match to protein family HMM TIGR01068 4641535 This gene is disrupted by the insertion of an IS element.; membrane protein, interruption-N 4641541 This gene is disrupted by the insertion of an IS element.; membrane protein, interruption-C 4641674 Residues 1-323 are internal sequences of dihydrolipoamide dehydrogenase, and residues 324-627 are C-terminal sequences of ISPps1 transposase.; dihydrolipoamide dehydrogenase/transposase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to GB:AAA21600.1; match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF04986; match to protein family HMM PF07992 4641654 IS1071, transposase, truncation; identified by similarity to SP:Q04222; match to protein family HMM PF01526 4641739 dihydrolipoamide dehydrogenase, truncation; identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992 4642010 putative transcriptional regulator, TetR family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4642000 MIP family protein; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00230 4642037 conserved hypothetical protein; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF07929 4642019 3,4-dihydroxyphenylacetate 2,3-dioxygenase; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00903; match to protein family HMM TIGR02295 4641948 putative major facilitator superfamily (MFS) transporter; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00083; match to protein family HMM PF07690 4641815 transcriptional regulator, TetR family domain; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00440 4642053 IS256 family transposase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error 4641849 Tn3 family resolvase, authentic point mutation; this gene contains a premature stop which is not the result of sequencing error; identified by match to protein family HMM PF02796 4641957 coenzyme A transferase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to SP:P38946 4641808 transcriptional regulator, lacI family, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:AAN24659.1 4641910 conserved hypothetical protein; this gene contains a frame shift which is not the result of sequencing error 4641906 heavy-metal-associated domain protein; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00403 4642018 putative major facilitator superfamily (MFS) transporter; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00083; match to protein family HMM PF07690 4641806 glucose-6-phosphate 1-dehydrogenase, truncation 4641970 conserved hypothetical protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to GB:BAD58424.1 4641925 IS110 family transposase, truncation; identified by match to protein family HMM PF01548 4641897 IS110 family transposase, truncation 4641803 Tn3 family resolvase, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to GB:AAK16521.1 4641833 sensory box/GGDEF domain protein, degenerate; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by similarity to GB:BAD78390.1; match to protein family HMM PF00990 4641955 ketoglutarate semialdehyde dehydrogenase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to PDB:1EYY_A 4642020 phage integrase family domain protein; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00589