-- dump date 20140618_210939 -- class Genbank::CDS -- table cds_note -- id note YP_001419680.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_001419681.1 binds the polymerase to DNA and acts as a sliding clamp YP_001419682.1 conserved hypothetical protein YaaA YP_001419683.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_001419684.1 hypothetical protein YaaB YP_001419685.1 negatively supercoils closed circular double-stranded DNA YP_001419686.1 negatively supercoils closed circular double-stranded DNA YP_001419687.1 hypothetical protein YaaC YP_001419688.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_001419689.1 serine-type D-ala-D-ala carboxypeptidase DacA YP_001419690.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_001419691.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate YP_001419692.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001419693.1 glycerate kinase GlxK YP_001419694.1 deoxyadenosine/deoxycytidine kinase DcK YP_001419695.1 deoxyguanosine kinase Dgk YP_001419696.1 hypothetical protein YaaH YP_001419697.1 isochorismatase homolog YaaI YP_001419698.1 cytidine/deoxycytidylate deaminase YaaJ YP_001419699.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_001419700.1 hypothetical protein YaaK YP_001419701.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_001419702.1 hypothetical protein YaaL YP_001419703.1 inhibitor of the pro-sigma-K processing machinery BofA YP_001419704.1 hypothetical protein CsfB YP_001419705.1 5-bromo 4-chloroindolyl phosphate (X-phos) hydrolysis protein XpaC YP_001419706.1 hypothetical protein YaaN YP_001419707.1 conserved hypothetical protein YaaO YP_001419708.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_001419709.1 conserved hypothetical protein YaaQ YP_001419710.1 conserved hypothetical protein YaaR YP_001419711.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_001419712.1 signal peptidase II homolog YaaT YP_001419713.1 in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA YP_001419714.1 conserved hypothetical protein YabB YP_001419715.1 conserved hypothetical protein YazA YP_001419716.1 conserved hypothetical protein YabC YP_001419717.1 transition state regulator; COG2002; regulation of stationary/sporulation gene expression; transcriptional control of biofilm formation YP_001419718.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_001419719.1 deoxyribonuclease YabD YP_001419720.1 conserved hypothetical protein YabE YP_001419721.1 ribonuclease M5 RnmV YP_001419722.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_001419723.1 sporulation specific peptidase YabG YP_001419724.1 conserved hypothetical protein Veg YP_001419725.1 small acid-soluble spore protein (alpha/beta-type SASP) SspF YP_001419726.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_001419727.1 pur operon repressor PurR YP_001419728.1 conserved hypothetical protein YabJ YP_001419729.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus YP_001419730.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_001419731.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_001419732.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response YP_001419733.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_001419734.1 hypothetical protein YabK YP_001419735.1 transcription-repair coupling factor Mfd YP_001419736.1 stage V sporulation protein sSpoVT YP_001419737.1 amino acid transport protein YabM YP_001419738.1 conserved hypothetical protein YabN YP_001419739.1 conserved hypothetical protein YabO YP_001419740.1 hypothetical protein YabP YP_001419741.1 hypothetical protein YabQ YP_001419742.1 cell-division initiation protein DivIC YP_001419743.1 polyribonucleotide nucleotidyltransferase YabR YP_001419744.1 sporulation stage II protein pSpoIIE YP_001419745.1 hypothetical protein YabS YP_001419746.1 probable serine/threonine-protein kinase YabT YP_001419747.1 conserved hypothetical protein YacA YP_001419748.1 hypoxanthine-guanine phosphoribosyltransferase HprT YP_001419749.1 cell division protein and general stress protein(class III heat-shock protein) FtsH YP_001419750.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_001419751.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_001419752.1 protein secretion protein prsA homolog YacD YP_001419753.1 cysteine synthetase A CysK YP_001419754.1 para-aminobenzoate synthase chain A PabB YP_001419755.1 amphibolic enzyme subunit from Bacillus subtilis performs both in anthranilate and para-aminobenzoate synthesis YP_001419756.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate YP_001419757.1 dihydropteroate synthase Sul YP_001419758.1 dihydroneopterin aldolase FolA YP_001419759.1 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase FolK YP_001419760.1 probable tRNA-dihydrouridine synthase I YacF YP_001419761.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_001419762.1 transcriptional regulator CtsR YP_001419763.1 modulation of CtsR repression protein McsA YP_001419764.1 modulation of CtsR repressionprotein McsB YP_001419765.1 class III stress response-related ATPase ClpC YP_001419766.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_001419767.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_001419768.1 conserved hypothetical protein YacL YP_001419769.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_001419770.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_001419771.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_001419772.1 serine acetyltransferase CysE YP_001419773.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_001419774.1 conserved hypothetical protein YazC YP_001419775.1 conserved hypothetical protein YacO YP_001419776.1 conserved hypothetical protein YacP YP_001419777.1 sigma factor H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_001419778.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif YP_001419779.1 forms a complex with SecY and SecG; SecYEG forms a protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_001419780.1 Modulates Rho-dependent transcription termination YP_001419781.1 binds directly to 23S ribosomal RNA YP_001419782.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_001419783.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_001419784.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_001419785.1 hypothetical protein YbxB YP_001419786.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_001419787.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_001419788.1 in Bacillus subtilis this non-essential protein associates with the ribosome YP_001419789.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_001419790.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_001419791.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_001419792.1 elongation factor EF-Tu; EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_001419793.1 hypothetical protein YbaC YP_001419794.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_001419795.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_001419796.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_001419797.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_001419798.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_001419799.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_001419800.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_001419801.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_001419802.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_001419803.1 one of the stabilizing components for the large ribosomal subunit YP_001419804.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_001419805.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_001419806.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_001419807.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_001419808.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_001419809.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_001419810.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_001419811.1 binds 5S rRNA along with protein L5 and L25 YP_001419812.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_001419813.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_001419814.1 late assembly protein YP_001419815.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_001419816.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_001419817.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_001419818.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_001419819.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_001419820.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_001419821.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_001419822.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_001419823.1 is a component of the macrolide binding site in the peptidyl transferase center YP_001419824.1 with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene YP_001419825.1 with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene YP_001419826.1 ABC transporter (pemease) YbaF YP_001419827.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_001419828.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_001419829.1 forms a direct contact with the tRNA during translation YP_001419830.1 hypothetical protein YbaJ YP_001419831.1 conserved hypothetical protein YizA YP_001419832.1 hypothetical protein YbaK YP_001419833.1 n-acetylmuramoyl-L-alanine amidase CwlD YP_001419834.1 ATP-binding mrp-like protein YbaL YP_001419835.1 germination response protein precursor GerD YP_001419836.1 kinB sporulation signaling pathway activator KbaA YP_001419837.1 polysaccharide deacetylase YbaN YP_001419838.1 glucose/mannose:H+ symporter/fucose permease GlcP1 YP_001419839.1 4-aminobutyrate aminotransferase GabT1 YP_001419840.1 fructose-1,6 biphosphatase/inositol monophosphatase Yktc1 YP_001419841.1 zinc-binding dehydrogenase GutB1 YP_001419842.1 sulfate permease YbaR YP_001419843.1 sodium dependent transporter YbaS YP_001419844.1 hypothetical protein YbaA YP_001419845.1 iron-uptake system permease protein FeuC YP_001419846.1 iron-uptake system permease protein FeuB YP_001419848.1 transcription regulator (AraC/XylS family) YbbB YP_001419849.1 conserved hypothetical protein YbbC YP_001419850.1 beta-hexosaminidase YbbD YP_001419851.1 beta-lactamase YbbE YP_001419852.1 sucrose phosphotransferase enzyme II YbbF YP_001419853.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_001419854.1 hypothetical protein YbbJ YP_001419855.1 conserved hypothetical protein YbbK YP_001419856.1 RNA-polymerase ECF sigma factor W; Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: this protein is involved in detoxification and protection against antimicrobial YP_001419857.1 predicted transmembrane transcriptional regulator (anti-sigma W factor) YbbM YP_001419858.1 conserved hypothetical protein YbbP YP_001419859.1 conserved hypothetical protein YbbR YP_001419860.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_001419862.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_001419868.1 member of the two componenent signal transduction system containing the sensor IM histidine kinase RBAM02390 YP_001419869.1 membrane bound sensor kinase; probably linked with the response regulator RBAM002380 YP_001419872.1 hypothetical protein YbdO1 YP_001419873.1 2,5-diketo-D-gluconic acid reductase KdgR1 YP_001419874.1 conserved hypothetical protein YxaC YP_001419875.1 transcriptional regulator YxaD YP_001419876.1 proline-specific permease#YbxG YP_001419877.1 hypothetical protein YfnB YP_001419878.1 together with response regulator RBAM002490 part of a two component signal transduction system YP_001419879.1 together with the sensor histidine kinase RBAM02480 part of a two component signal transduction system YP_001419880.1 ABC transporter (ATP-binding protein) YfiL YP_001419881.1 ABC transporter, permease component YfiM YP_001419882.1 ABC-type multidrug transport system, permease component YfiN1 YP_001419884.1 hypothetical protein YolA1 YP_001419885.1 sporulation-specific SASP protein CsgA YP_001419886.1 hypothetical protein YqeB YP_001419887.1 hypothetical protein YbyB YP_001419888.1 hypothetical protein YbeC YP_001419890.1 glycerophosphoryl diester phosphodiesterase GlpQ YP_001419891.1 glycerol-3-phosphate permease GlpT YP_001419892.1 hypothetical protein YbeF YP_001419893.1 4-hydroxyphenylacetate-3-hydroxylase YoaI YP_001419894.1 hypothetical protein YbfE YP_001419895.1 conserved hypothetical protein YbfG YP_001419899.1 non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis YP_001419900.1 phosphatidylserine synthase PssA YP_001419901.1 alkaline phosphatase YbfM YP_001419902.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine YP_001419903.1 hypothetical protein YbfN YP_001419904.1 conserved hypothetical protein YbfQ YP_001419905.1 proton/glutamate symport protein GltP YP_001419906.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_001419907.1 histidine permease YbgF YP_001419908.1 converts homocysteine and S-adenosyl-methionine to methionine and S-adenosyl-homocysteine or S-methyl-methionine and homocysteine to two methionines YP_001419909.1 sodium/proton-dependent alanine transporter YbgH YP_001419910.1 catalyzes the formation of glutamate from glutamine YP_001419911.1 sensor histidine kinase; transcriptional control of biofilm formation YP_001419912.1 two-component response regulator involved in biofilm formation YP_001419914.1 tryptophan RNA-binding attenuator protein inhibitory protein RtpA (YczA) YP_001419916.1 cation efflux transporter YdfM YP_001419917.1 NAD(P)H nitroreductase YdfN YP_001419918.1 glyoxylase family protein YdfO YP_001419919.1 conserved hypothetical protein YdfP YP_001419920.1 thioredoxin like protein YdfQ YP_001419921.1 hypothetical protein YcbP YP_001419922.1 cell wall hydrolase CwlJ YP_001419923.1 phosphodiesterase/alkaline phosphatase PhoD YP_001419924.1 sec-independent protein translocase protein TatAD YP_001419925.1 sec-independent protein translocase protein TatCD YP_001419926.1 catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline YP_001419927.1 selenocysteine lyase YcbU YP_001419928.1 drug-export protein LmrB YP_001419929.1 transcription repressor of lincomycin operon LmrA YP_001419930.1 asparaginase YccC YP_001419931.1 triacylglycerol lipase Lip YP_001419932.1 conserved hypothetical protein YccF YP_001419933.1 conserved hypothetical YccK YP_001419934.1 hypothetical protein YcdA YP_001419935.1 hypothetical protein YcdB YP_001419936.1 hypothetical protein YcdC YP_001419937.1 hypothetical protein YcdD YP_001419938.1 response regulator aspartate phosphatase; cd00189, TPR, tetratricopeptide repeat domain YP_001419939.1 glucose 1-dehydrogenase YcdF YP_001419940.1 oligo-1,6-glucosidase YcdG YP_001419941.1 ABC-transporter; cd01017; high-affinity zinc ABC transporter (Zn (II) -binding lipoprotein; proposed to be involved in surface adhesion YP_001419942.1 ABC transporter (ATP-binding protein) YcdI YP_001419943.1 zinc ABC transporter, permease protein YceA YP_001419944.1 conserved hypothetical protein YceB YP_001419945.1 tellurium resistance protein YceC YP_001419946.1 tellurium resistance protein YceD YP_001419947.1 tellurium resistance protein YceE YP_001419948.1 tellurium resistance protein YceF YP_001419949.1 hypothetical protein YceG YP_001419950.1 toxic anion resistance protein YceH YP_001419951.1 hypothetical transport protein YceI YP_001419952.1 glycine betaine ABC transporter (ATP-binding protein) OpuAA YP_001419953.1 glycine betaine ABC transporter (permease) OpuAB YP_001419954.1 glycine betaine ABC transporter (glycine betaine-binding protein) OpuAC YP_001419955.1 amidohydrolase AmhX YP_001419956.1 conserved hypothetical protein YcgA YP_001419957.1 hypothetical protein YcgB YP_001419958.1 alpha-amylase AmyE YP_001419959.1 Converts (S)-lactate and NAD(+) to pyruvate and NADH YP_001419960.1 multidrug-efflux transporter Mdr YP_001419961.1 conserved hypothetical protein YcgE YP_001419962.1 conserved hypothetical protein YcgF YP_001419963.1 conserved hypothetical protein YqcI YP_001419964.1 amino acid transporter YcgH YP_001419965.1 conserved hypothetical protein YcgI YP_001419966.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_001419967.1 antimicrobial peptide Lci YP_001419968.1 ATP-binding membrane protein TmrB YP_001419970.1 sugar transport-related protein YcbE YP_001419971.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_001419972.1 cephalosporin C deacetylase Cah YP_001419973.1 conserved hypothetical protein YcgL YP_001419974.1 proline dehydrohenase YcgM YP_001419975.1 catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate YP_001419976.1 sodium/proline symporter YcgO YP_001419977.1 conserved hypothetical protein YcgP YP_001419978.1 thioredoxin reductase like protein YcgT YP_001419979.1 uroporphyrin-III C-methyltransferase NasF YP_001419980.1 assimilatory nitrite reductase (subunit) NasE YP_001419981.1 assimilatory nitrite reductase (subunit) NasD YP_001419982.1 assimilatory nitrate reductase (catalytic subunit) NasC YP_001419983.1 assimilatory nitrate reductase (electron transfer subunit) NasB YP_001419984.1 nitrate transporter NasA YP_001419985.1 conserved hypothetical protein YciC YP_001419987.1 conserved hypothetical protein YckC YP_001419988.1 hypothetical protein YckD YP_001419989.1 conserved hypothetical protein YckE YP_001419990.1 inhibitor of the DNA degrading activity of NucA (competence) Nin YP_001419991.1 membrane-associated nuclease NucA YP_001419992.1 6-phospho-3-hexuloisomerase (PHI) HxlB YP_001419993.1 3-hexulose-6-phosphate synthase (HPS) HxlA YP_001419994.1 transcriptional regulator of hxlAB expression HxlR YP_001419995.1 surfactin biosynthesis; surfactin synthetase A YP_001419996.1 surfactin synthesis; surfactin synthetase B YP_001419997.1 genetic competence; competence protein S YP_001419998.1 surfactin synthesis; surfactin synthetase C YP_001419999.1 surfactin synthesis; surfactin synthetase D YP_001420000.1 COG0436; aspartate/tyrosine/aromatic acids and related molecules YP_001420002.1 pfam00892, integral membrane protein DUF6 YP_001420003.1 COG1167, AR08; transcriptional regulator containing a DNA binding HTH domain and an aminotransferase domain [MocR family] YP_001420004.1 phosphopantetheinylation of a serine residue in apo-ACP or PCP to convert them into active holo-form; phosphopantetheinyl transferase YP_001420005.1 COG2364, predicted integral membrane protein YP_001420006.1 ABC-type transport protein, ATPase component; possibly involved in octopin transport YP_001420007.1 ABC-type transport protein, permease component; possibly involved in octopin transport YP_001420008.1 probable amino-acid ABC transporter extracellular binding protein; possibly involved in opine synthesis YP_001420009.1 transcription regulator LysR family YclA YP_001420010.1 phenylacrylic acid decarboxylase YclB YP_001420011.1 conserved hypothetical protein YclC YP_001420012.1 hypothetical protein YclD1 YP_001420013.1 hypothetical protein YclD2 YP_001420014.1 di-tripeptide ABC transporter, permease YclF YP_001420015.1 hypothetical protein YclG YP_001420016.1 hypothetical protein YczF YP_001420017.1 spore germination protein GerKA YP_001420018.1 germination response protein GerKC YP_001420019.1 germination response protein GerKB YP_001420020.1 nitrilotriacetate monooxygenase like protein YxeK YP_001420021.1 conserved hypothetical protein YxeL YP_001420022.1 amino-acid ABC transporter binding protein YxeM YP_001420023.1 amino acid ABC transporter (permease); possibly involved in opine transport YP_001420024.1 probable amino acid ABC transporter (ATP-binding protein) YxeO YP_001420025.1 conserved hypothetical protein YxeP YP_001420026.1 conserved hypothetical protein YxeQ YP_001420027.1 ABC transporter (ATPase component) YclH YP_001420028.1 ABC transporter (permease) YclI YP_001420029.1 two component response regulator; COG0745, OmpR family consisting of a CheY-like receiver domain and a winged helix DNA-binding domain YP_001420030.1 signal transduction sensor histidin kinase; COG0642; part of a signal transduction two component system YP_001420031.1 response regulator aspartate phosphatase; cd00189, TPR, tetratricopeptide repeat domain YP_001420032.1 inhibitory peptide of RapC; RapC phosphatase regulator/competence and sporulation stimulating factor (CSF) YP_001420034.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive YP_001420035.1 ferrichrome ABC transporter (permease) YclN YP_001420036.1 ferrichrome ABC transporter (permease) YclO YP_001420037.1 ferrichrome ABC transporter (ATP-binding protein) YclP YP_001420038.1 ferrichrome ABC transporter (periplasmic binding protein) YP_001420039.1 multidrug resistance protein YcnB YP_001420040.1 transcription regulator TetR/AcrR family like protein YcnC YP_001420041.1 NADPH-flavin oxidoreductase YcnD YP_001420042.1 conserved hypothetical protein YcnE YP_001420043.1 transcription regulator ArsR family like protein YczG YP_001420044.1 transcriptional regulator (GntR/MocR family) GabR YP_001420045.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate YP_001420046.1 succinate-semialdehyde dehydrogenase GabD YP_001420047.1 glucose uptake protein GlcU YP_001420048.1 Converts glucose to D-glucono-1,5 lactone YP_001420049.1 conserved hypothetical protein YcnI YP_001420050.1 copper export protein YcnJ YP_001420051.1 transcription regulator (DeoR family) YcnK YP_001420052.1 hypothetical protein YcnL YP_001420053.1 phosphotransferase system (PTS) mannitol-specific enzyme IIABC component MtlA YP_001420055.1 mannitol-1-phosphate dehydrogenase MtlD YP_001420056.1 conserved hypothetical protein YcsD YP_001420057.1 conserved hypothetical protein YcsE YP_001420058.1 lactam utilization protein YcsF YP_001420059.1 conserved hypothetical protein YcsG YP_001420060.1 conserved hypothetical protein YcsI YP_001420061.1 sporulation inhibitor KipI YP_001420062.1 kipI antagonist KipA YP_001420063.1 HTH-type transcriptional regulator (kip operon repressor) KipR YP_001420064.1 conserved hypothetical protein YcsK YP_001420065.1 hypothetical protein YczI YP_001420066.1 conserved hypothetical protein YczJ YP_001420067.1 penicillin-binding protein III PbpC YP_001420068.1 aryl-alcohol dehydrogenase YcsN YP_001420069.1 transcriptional antiterminator MtlR YP_001420070.1 acid-CoA ligase YdaB YP_001420071.1 alcohol dehydrogenase YdaD YP_001420072.1 conserved hypothetical protein YdaE YP_001420073.1 acetyltransferase YdaF YP_001420074.1 general stress protein YdaG YP_001420075.1 hypothetical protein YdaH YP_001420076.1 conserved hypothetical protein YdzA YP_001420077.1 HTH-type transcriptional regulator LrpC YP_001420078.1 decatenates replicating daughter chromosomes YP_001420079.1 hypothetical protein YdaJ YP_001420080.1 conserved hypothetical protein YdaK YP_001420081.1 hypothetical protein YdaL YP_001420082.1 cellulose synthase YdaM YP_001420083.1 hypothetical protein YdaN YP_001420084.1 conserved hypothetical protein YdaO YP_001420085.1 mutator protein MutT YP_001420086.1 catalyzes the formation of acetyl phosphate from pyruvate YP_001420088.1 hypothetical protein YpzD YP_001420090.1 response regulator aspartate phosphatase RapH YP_001420099.1 hypothetical protein conserved protein YdaT YP_001420100.1 hypothetical protein YvaD YP_001420101.1 multidrug-efflux transporter YvaE YP_001420102.1 ABC transporter (binding protein) like protein YdbA YP_001420103.1 general stress protein GsiB YP_001420104.1 conserved hypothetical protein YdbB YP_001420105.1 hypothetical protein YdbC YP_001420106.1 manganese-containing catalase YdbD YP_001420107.1 C4-dicarboxylate binding protein DctB YP_001420108.1 C4-dicarboxylate sensor kinase; COG3290, signal transduction mechanism YP_001420109.1 C4-dicarboxylate response regulator; COG4565, signal transduction mechanism YP_001420110.1 involved in the transport of C4-dicarboxylates across the membrane YP_001420111.1 conserved hypothetical protein YdbI YP_001420112.1 ABC transporter (ATP-binding protein) YdbJ YP_001420113.1 transcriptional control of biofilm formation YP_001420114.1 hypothetical protein YdbL YP_001420115.1 butyryl-CoA dehydrogenase YdbM YP_001420116.1 hypothetical protein YdbN YP_001420117.1 hypothetical protein YdbO1 YP_001420118.1 hypothetical protein YdbO2 YP_001420119.1 thiredoxin protein YdbP YP_001420120.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_001420121.1 UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate-D-alanyl-D-alanine ligase MurF YP_001420122.1 ATP-dependent RNA helicase YdbR YP_001420123.1 conserved hypothetical protein YdbS YP_001420124.1 conserved hypothetical protein YdbT YP_001420125.1 hypothetical protein YdcA YP_001420126.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_001420127.1 conserved hypothetical protein YdcC YP_001420128.1 D-alanine racemase Alr YP_001420129.1 hypothetical protein YdcD YP_001420130.1 conserved hypothetical protein YdcE YP_001420131.1 positive regulator of sigma-B activity RsbR YP_001420132.1 negative regulator of sigma-B activity (antagonist of RsbT) RsbS YP_001420133.1 serine/threonine-protein kinase rsbT (Switch protein/serine kinase) (Anti-sigma-B factor RsbT YP_001420134.1 sigma factor sigB regulation protein (phosphoserine phosphatase) RsbU YP_001420135.1 anti-anti-sigma factor (antagonist of RsbW) RsbV YP_001420136.1 binds to sigma-B preventing the formation of an RNA polymerase holoenzyme YP_001420137.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase YP_001420138.1 sigma-B activity indirect negative regulator RsbX YP_001420139.1 conserved hypothetical protein YdcI YP_001420141.1 conserved hypothetical protein YdcK YP_001420142.1 conserved hypothetical protein YrkL YP_001420144.1 conserved hypothetical protein YddR YP_001420145.1 transcriptional regulator (Lrp/AsnC family) LrpA YP_001420151.1 hypothetical protein YddJ YP_001420152.1 conserved hypothetical protein YdeM YP_001420154.1 conserved hypothetical protein yYwnA1 YP_001420155.1 conserved hypothetical protein YwnB YP_001420163.1 cold shock protein; involved in elicitation of plant basal defence YP_001420164.1 conserved hypothetical protein YdeB YP_001420165.1 conserved hypothetical protein YrkD YP_001420166.1 conserved hypothetical protein YrkE YP_001420168.1 conserved hypothetical protein YrkF YP_001420169.1 conserved hypothetical protein YrkH YP_001420170.1 conserved hypothetical protein YrkI YP_001420171.1 conserved hypothetical protein YrkJ YP_001420172.1 aspartate racemase RacX YP_001420175.1 conserved hypothetical protein YbfA YP_001420176.1 hypothetical protein YbfB YP_001420177.1 conserved hypothetical protein YvdO YP_001420181.1 conserved hypothetical protein YvdP YP_001420183.1 cation-efflux system membrane protein CzcD YP_001420184.1 potassium uptake protein TrkA YP_001420185.1 conserved hypothetical protein YrkC YP_001420186.1 hypothetical protein YkkA YP_001420190.1 hypothetical protein YdeH YP_001420197.1 NADP-dependent alcohol dehydrogenase AdhA YP_001420198.1 transcriptional regulator YraB YP_001420203.1 COG0745, OmpR like response regulator consisting of a CheY-like receiver domain and a winged helix-DNA-binding domain [signal transduction] YP_001420204.1 COG0642, signal transduction histidine kinase YP_001420206.1 hypothetical protein YdeR YP_001420207.1 conserved hypothetical protein YdeS YP_001420208.1 conserved hypothetical protein YdeK YP_001420209.1 transcriptional regulator (GntR family)YdeL YP_001420210.1 spore coat protein YraD YP_001420211.1 spore coat protein YraE YP_001420212.1 alcohol dehydrogenase AdhB YP_001420213.1 spore coat protein YraF YP_001420214.1 spore coat protein YraG YP_001420215.1 sensor histidine kinase; COG4585, signal transduction YP_001420216.1 two-component response regulator; COG2197, CitB like response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain YP_001420217.1 antibiotic transport-associated protein YdfJ YP_001420219.1 ABC transporter, ATPase component ExpZ YP_001420220.1 conserved hypothetical protein YnaD YP_001420222.1 forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone YP_001420223.1 bicyclomycin resistance protein YdgK YP_001420226.1 membrane spanning protein YdhB YP_001420227.1 diamine N-acetyltransferase BltD YP_001420228.1 transcriptional regulator of bltD operon BltR YP_001420229.1 hypothetical protein YdzE YP_001420230.1 mutator MutT protein homolog YjhB YP_001420232.1 hypothetical protein YcsA YP_001420233.1 transcriptional regulator YdhC YP_001420234.1 macrolide glycosyltransferase YdhE YP_001420235.1 hypothetical protein YjiA YP_001420236.1 hypothetical protein YdcS YP_001420237.1 penicillin-binding protein PbpE YP_001420238.1 hypothetical protein YdhK YP_001420239.1 conserved hypothetical protein YdhL YP_001420240.1 conserved hypothetical protein YdhQ YP_001420242.1 conserved hypothetical protein YycB YP_001420243.1 conserved hypothetical protein YvdR YP_001420244.1 conserved hypothetical protein YvdS YP_001420245.1 transcription regulator (TetR/AcrR family) YvdT YP_001420246.1 aspartate-proton symporter YveA YP_001420247.1 manganese cataYdhU YP_001420248.1 conserved hypothetical protein YndB YP_001420249.1 conserved hypothetical protein YhfP YP_001420250.1 sugar transporter YdjK YP_001420251.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP YP_001420252.1 conserved hypothetical protein YdiB YP_001420253.1 glycoprotein endopeptidase homolog YdiC YP_001420254.1 ribosomal-protein-alanine N-acetyltransferase YdiD YP_001420255.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_001420256.1 ABC transporter ATP-binding YdiF YP_001420257.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_001420258.1 modulates transcription in response to the NADH/NAD(+) redox state YP_001420259.1 sec-independent protein translocase protein TatAy YP_001420260.1 sec-independent protein translocase protein TatCy YP_001420261.1 hypothetical lipoprotein YdiK YP_001420262.1 conserved hypothetical protein YdiL YP_001420263.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_001420264.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_001420265.1 conserved hypothetical protein YkuG YP_001420266.1 hypothetical protein YkuH YP_001420269.1 transcriptional regulator GutR YP_001420270.1 sorbitol dehydrogenase (L-iditol 2-dehydrogenase) GutB YP_001420271.1 probable glucitol transport protein GutA YP_001420272.1 fructokinase homolog YdjE YP_001420273.1 hypothetical protein YjdJ YP_001420274.1 phage shock protein A homolog like protein PspA YP_001420275.1 hypothetical protein YdjG YP_001420276.1 conserved hypothetical protein YdjH YP_001420277.1 conserved hypothetical protein YdjI YP_001420278.1 acetyltransferase YrhL YP_001420279.1 anti-sigV factor YrhM YP_001420280.1 RNA polymerase ECF(extracytoplasmic function)-type sigma factor SigV YP_001420281.1 dehydrogenase YdjL YP_001420282.1 hypothetical protein YdjM YP_001420283.1 hypothetical protein YdjN YP_001420285.1 hypothetical protein YdjO YP_001420286.1 spore coat protein (outer) CotA YP_001420287.1 gamma-aminobutyrate (GABA) permease GabP YP_001420288.1 transport protein YeaB YP_001420289.1 conserved hypothetical protein YeaC YP_001420290.1 conserved hypothetical protein YeaD YP_001420291.1 conserved hypothetical protein YebA YP_001420292.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_001420295.1 hypoxanthine/guanine permease PbuG YP_001420296.1 hypothetical protein YebC YP_001420297.1 hypothetical protein YebD YP_001420298.1 hypothetical protein YebE YP_001420299.1 hypothetical protein YebG YP_001420300.1 phosphoribosylaminoimidazole carboxylase PurE YP_001420301.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_001420302.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_001420303.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_001420304.1 With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway YP_001420305.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_001420306.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_001420307.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_001420308.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_001420309.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_001420310.1 involved in de novo purine biosynthesis YP_001420311.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_001420312.1 adenine deaminase YerA YP_001420313.1 hypothetical protein YerB YP_001420314.1 conserved hypothetical protein YerC YP_001420315.1 glutamate synthase YerD YP_001420316.1 PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer YP_001420317.1 ATP-dependent DNA helicase PcrA YP_001420318.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_001420319.1 hypothetical protein YerH YP_001420320.1 conserved hypothetical protein YerI YP_001420321.1 hypothetical protein SapB YP_001420322.1 proline transporter OpuE YP_001420323.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_001420324.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001420325.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_001420326.1 transcription regulator (tetr/acrr family) YerO YP_001420327.1 multidrug efflux pump; self resistance against surfactin; essential for swarming motility YP_001420328.1 similar to YegS from E. coli YP_001420329.1 RNA methyltransferase YefA YP_001420336.1 hypothetical protein YeeF2 YP_001420338.1 hypothetical protein YeeF1 YP_001420339.1 conserved hypothetical protein YeeI YP_001420340.1 spore coat peptide assembly protein CotJA YP_001420341.1 spore coat peptide assembly protein CotJB YP_001420342.1 spore coat peptide assembly protein CotJC YP_001420343.1 conserved hypothetical protein YesJ YP_001420345.1 conserved hypothetical protein YetF YP_001420346.1 conserved hypothetical protein YetG YP_001420347.1 conserved hypothetical protein YetH YP_001420348.1 conserved hypothetical protein YetI YP_001420349.1 hypothetical protein YezD YP_001420351.1 conserved hypothetical protein YetJ YP_001420352.1 transcription regulator MarR family homolog YetL YP_001420353.1 salicylate 1-monooxygenase YetM YP_001420354.1 hypothetical protein YetN YP_001420355.1 cytochrome P450/NADPH-cytochrome P450 reductase YetO YP_001420367.1 phosphoglycerol transferase YfnI YP_001420368.1 glucose-1-phosphate cytidylyltransferase YfnH YP_001420369.1 CDR-glucose 4,6-dehydratase YfnG YP_001420370.1 hypothetical protein YfnF YP_001420371.1 hypothetical protein YfnE YP_001420372.1 hypothetical protein YfnD YP_001420373.1 fosfidomycin resistance protein YfnC YP_001420374.1 metabolite transporter YfnA YP_001420375.1 benzaldehyde dehydrogenase YfmT YP_001420376.1 methyl-accepting chemotaxis protein YfmS YP_001420377.1 dehydrogenase YhxD YP_001420379.1 ABC transporter (ATP-binding protein) YfmR YP_001420380.1 transcription regulator MerR family YfmP YP_001420381.1 multidrug-efflux transporter YfmO YP_001420382.1 ABC transporter (ATP-binding protein) YfmM YP_001420383.1 RNA helicase Yfml YP_001420384.1 NADP-dependent oxidoreductase YfmJ YP_001420385.1 hypothetical protein YfmB YP_001420386.1 general stress protein 17M (GSP17M) YflT YP_001420387.1 COG3866; pectate lyase YP_001420388.1 2-oxoglutarate/malate translocator YflS YP_001420390.1 proposed to be involved in surface adhesion YP_001420391.1 pfam02018; carbohydrate binding domain; proposed to be involved in surface adhesion YP_001420392.1 collagen like triple helix with GXT repeats; proposed to be involved in surface adhesion YP_001420393.1 two component sensor histidine kinase; COG3290, CitA like family regulating citrate/malate metabolism by response to the environmental Mg-citrate complex YP_001420394.1 two component response regulator; COG4565, response to the environmental Mg-citrate complex; regulation of citrate/malate metabolism YP_001420395.1 conserved hypothetical protein YflP YP_001420396.1 magnesium citrate secondary transporter CitM YP_001420397.1 hypothetical protein YflN YP_001420398.1 nitric oxide synthase oxygenase YflM YP_001420399.1 catalyzes the hydrolysis of acylphosphate YP_001420400.1 conserved hypothetical protein YflK YP_001420401.1 hypothetical protein YflJ YP_001420402.1 hypothetical protein YflI YP_001420403.1 hypothetical protein YflH YP_001420404.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential YP_001420405.1 phosphotransferase system (PTS) N-acetylglucosamine-specific enzymeIICB component NagP YP_001420406.1 hypothetical protein YfmQ YP_001420407.1 conserved hypothetical protein; repressed by root exudate YP_001420408.1 hypothetical protein YflB YP_001420409.1 spore coat protein CotP YP_001420410.1 hypothetical protein YdgA YP_001420411.1 hypothetical protein YdgB YP_001420412.1 phosphotransferase system (PTS) trehalose-specific enzyme IIBC component TreP YP_001420413.1 trehalose-6-phosphate hydrolase TreA YP_001420414.1 trehalose operon transcriptional repressor TreR YP_001420415.1 NAD(P)H nitroreductase YfkO YP_001420418.1 in Escherichia coli this is a periplasmic enzyme while in gram positive organisms it may be anchored at the cell surface; this protein appears to consist of a dimer fusion; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate YP_001420419.1 conserved hypothetical protein YfkM YP_001420423.1 catalyzes the dehydration of 3-dehydroquinate to form 3-dehydroshikimate in aromatic amino acid biosynthesis YP_001420424.1 conserved hypothetical protein YfkL YP_001420425.1 hypothetical protein YfkK YP_001420426.1 protein-tyrosine phosphatase YfkJ YP_001420427.1 conserved hypothetical protein YfkI YP_001420428.1 conserved hypothetical protein YfkH YP_001420429.1 hypothetical protein YfkF YP_001420430.1 H+/Ca2+ antiporter YfkE YP_001420431.1 hypothetical protein YfkD YP_001420432.1 conserved hypothetical protein YfkC YP_001420433.1 conserved hypothetical protein YfkA YP_001420434.1 hypothetical protein YfjT YP_001420435.1 polysaccharide deacetylase PdaA YP_001420436.1 hypothetical oxidoreductase YfjR YP_001420438.1 divalent cation transport protein YfjQ YP_001420439.1 DNA-3-methyladenine glycosidase II YfjP YP_001420440.1 RNA methyltransferase YfjO YP_001420443.1 conserved hypothetical protein YfjN YP_001420444.1 hypothetical protein YfjM YP_001420445.1 acetoin dehydrogenase E1 component (TPP-dependent alpha subunit) AcoA YP_001420446.1 acetoin dehydrogenase E1 component (TPP-dependent beta subunit) AcoB YP_001420447.1 acetoin dehydrogenase E2 component (dihydrolipoamide acetyltransferase) AcoC YP_001420448.1 E3 component of acetoin cleaving system; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_001420449.1 transcription activator of acetoin dehydrogenaseoperon AcoR YP_001420450.1 small, acid-soluble spore protein SspH YP_001420451.1 maltose-6'-phosphate glucosid GlvA YP_001420452.1 HTH-type transcriptional regulator GlvR YP_001420453.1 phosphotransferase system (PTS) maltose-specificenzyme IICB component GlvC YP_001420455.1 ABC transporter (ATP binding protein) YfiB YP_001420456.1 hypothetical ABC transporter ATP-binding protein YfiC YP_001420457.1 conserved hypothetical protein YfiD YP_001420458.1 conserved hypothetical protein YfiE YP_001420459.1 protoheme IX farnesyltransferase CtaO YP_001420460.1 padC transcriptional repressor PadR YP_001420462.1 surface adhesion protein YP_001420465.1 hypothetical protein YfiT YP_001420466.1 multidrug-efflux transporter YfiU YP_001420467.1 conserved hypothetical protein YfiV YP_001420468.1 conserved hypothetical protein YfiX YP_001420469.1 conserved hypothetical protein YfhB YP_001420470.1 conserved hypothetical protein YfhC YP_001420471.1 hypothetical protein YfhD YP_001420472.1 hypothetical protein YfhE YP_001420473.1 conserved hypothetical protein YfhF YP_001420474.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_001420475.1 conserved hypothetical protein YfhH YP_001420476.1 conserved hypothetical protein YfhI YP_001420477.1 hypothetical protein YbfJ YP_001420478.1 extracellular metalloprotease precursorMpr YP_001420479.1 SASP K; found in the forespore compartment YP_001420480.1 hypothetical protein YfhJ YP_001420481.1 conserved hypothetical protein YfhK YP_001420482.1 hypothetical protein YfhL YP_001420483.1 conserved hypothetical protein YfhM YP_001420484.1 glycosyl transferase CsbB YP_001420485.1 hypothetical protein FhO YP_001420486.1 conserved hypothetical protein YfhP YP_001420487.1 A/G-specific DNA glycosylase YfhQ YP_001420488.1 hypothetical protein YfhS YP_001420489.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_001420490.1 small acid-soluble spore protein SspE YP_001420491.1 hypothetical protein YgaB YP_001420492.1 conserved hypothetical protein YgaC YP_001420493.1 ABC transporter ATP-binding protein YgaD YP_001420494.1 conserved hypothetical protein YgaE YP_001420495.1 converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate YP_001420496.1 conserved hypothetical protein YgaF YP_001420497.1 repressor of peroxide stress regulon; Fur homolog;repressor of ahpCF, katA, zosA, mrgA; transcriptional activator of srfA gene expression YP_001420498.1 hypothetical protein YgzB YP_001420499.1 hypothetical protein YgxA YP_001420501.1 conserved hypothetical protein YgaJ YP_001420502.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_001420503.1 conserved hypothetical protein YgaK YP_001420504.1 transcriptional regulatory protein SenN YP_001420505.1 vegetative catalase KatA YP_001420507.1 aliphatic sulfonates transport ATP-binding protein SsuB YP_001420508.1 aliphatic sulfonates binding protein precursor SsuA YP_001420509.1 aliphatic sulfonates transport permease protein SsuC YP_001420510.1 catalyzes the release of sulfite from alkanesulfonates YP_001420511.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif YP_001420512.1 hypothetical lipoprotein YgaO YP_001420513.1 conserved hypothetical protein YhzB YP_001420514.1 conserved hypothetical protein YhbA YP_001420515.1 hypothetical protein YhbB YP_001420516.1 rRNA methylase involved in elicitation plant basal defence YP_001420517.1 hypothetical protein YhbD YP_001420518.1 hypothetical protein YhbE YP_001420519.1 conserved hypothetical protein YhbF YP_001420520.1 serine protein kinase PrkA YP_001420521.1 stress response UPF0229 protein YhbH YP_001420522.1 transcriptional regulator (MarR family)YhbI YP_001420523.1 hypothetical protein YhbJ YP_001420524.1 hypothetical transport protein YhcA YP_001420525.1 conserved hypothetical protein YhcB YP_001420526.1 hypothetical protein YhcC YP_001420527.1 hypothetical protein YhcE YP_001420528.1 transcriptional regulator YhcF YP_001420529.1 ABC transporter ATP-binding protein YhcG YP_001420530.1 ABC transporter (ATP-binding protein) YhcH YP_001420531.1 conserved hypothetical protein YhcI YP_001420532.1 major cold shock protein; involved in elicitation plant basal defence YP_001420533.1 hypothetical lipoprotein YhcJ YP_001420534.1 conserved hypothetical protein YhcK YP_001420535.1 sodium-dicarboxylate symporter YhcL YP_001420536.1 hypothetical protein YhcM YP_001420537.1 lipoprotein YhcN YP_001420538.1 hypothetical protein YhcP YP_001420539.1 conserved hypothetical protein YhcQ YP_001420540.1 5'-nucleotidase YhcR YP_001420541.1 conserved hypothetical protein YhcS YP_001420542.1 hypothetical pseudouridine synthase yhcT (pseudouridylate synthase) (Uracil hydrolyase) YhcT YP_001420543.1 hypothetical protein YhcU YP_001420544.1 conserved hypothetical protein YhcV YP_001420545.1 phosphoglycolate phosphatase YhcW YP_001420546.1 predicted nitrilase; possibly involved in Trp dependent IAA synthesis. Mutant yhcX was found slightly impaired in IAA synthesis and plant growth promotion YP_001420547.1 aminotransferase YhxA YP_001420548.1 glycerol uptake operon antiterminator regulatoryprotein GlpP YP_001420549.1 glycerol uptake facilitator GlpF YP_001420550.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_001420551.1 glycerol-3-phosphate dehydrogenase GlpD YP_001420552.1 phosphomannomutase; likely to be involved in exopolysaccharide synthesis YP_001420553.1 sensor histidine kinase; COG4585, two component signal transduction YP_001420554.1 two component response regulator; COG2197, CitB family, RR containing a CheY-like receiver domain and a HTH DNA-binding domain YP_001420555.1 conserved hypothetical protein YhdA YP_001420556.1 hypothetical protein YhdB YP_001420557.1 hypothetical protein YhdC YP_001420558.1 endopeptidase lytF precursor LytF YP_001420559.1 conserved hypothetical protein YhdE YP_001420560.1 conserved hypothetical protein YgxB YP_001420561.1 stage V sporulation protein SpoVR YP_001420562.1 alkaline phosphatase IV precursor (APase IV) PhoA YP_001420563.1 cell wall hydrolase phosphatase-associated protein LytE YP_001420564.1 HTH-type transcriptional regulator (Citrate synthase I repressor) CitR YP_001420565.1 citrate synthase I CitA YP_001420566.1 glucose 1-dehydrogenase YhdF YP_001420567.1 amino acid transporter YhdG YP_001420568.1 sodium-dependent transporter YhdH YP_001420569.1 anti-sigma M factor YhdK YP_001420570.1 anti-sigma M factor YhdL YP_001420571.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in B. subtilis this protein is activated in response to cell wall antibiotics, ethanol, heat, acid, and superoxide stress YP_001420572.1 1-acylglycerol-3-phosphate o-acyltransferase YhdO YP_001420573.1 conserved hypothetical protein YhdP YP_001420574.1 HTH-type transcriptional regulator CueR YP_001420575.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001420576.1 involved in polyketide production YP_001420577.1 hemolysin YhdT YP_001420578.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_001420579.1 conserved hypothetical protein YhdV YP_001420580.1 glycerophosphodiester phosphodiesterase YhdW YP_001420581.1 hypothetical protein YhdX YP_001420582.1 conserved hypothetical protein YhdY YP_001420583.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_001420584.1 conserved hypothetical protein YheN YP_001420585.1 D-alanine aminotransferase Dat YP_001420586.1 HTH-type transcriptional regulator PksA YP_001420587.1 hypothetical protein YmcC YP_001420588.1 stress response protein NhaX YP_001420589.1 ABC transporter (ATP-binding protein) YheI YP_001420590.1 ABC transporter (ATP-binding protein) YheH YP_001420591.1 conserved hypothetical protein YheG YP_001420592.1 hypothetical protein YheF YP_001420593.1 small acid-soluble spore protein (beta-type SASP) SspB YP_001420594.1 hypothetical protein YheE YP_001420595.1 hypothetical protein YheD YP_001420596.1 hypothetical protein YheC YP_001420597.1 conserved hypothetical protein YheB YP_001420598.1 conserved hypothetical protein YheA YP_001420599.1 conserved hypothetical protein YhaZ YP_001420600.1 hypothetical protein YhaY YP_001420601.1 stress response protein YhaX YP_001420602.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001420604.1 Na+/H+ antiporter YhaU YP_001420605.1 conserved hypothetical protein YhaT YP_001420606.1 hypothetical protein YhaS YP_001420607.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001420608.1 ABC transporter (ATP-binding protein) YhaQ YP_001420609.1 conserved hypothetical protein YhaP YP_001420610.1 hypothetical protein YhaO YP_001420611.1 conserved hypothetical protein YhaN YP_001420612.1 catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates YP_001420613.1 hypothetical protein YhaL YP_001420614.1 foldase protein prsA precursor PrsA YP_001420616.1 conserved hypothetical protein YhaK YP_001420617.1 hypothetical protein YhaI YP_001420618.1 hpr; ScoC; MarR family; protease production regulatory protein YP_001420619.1 hypothetical protein YhaH YP_001420620.1 hypothetical protein YhaG YP_001420621.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_001420622.1 cell-cycle regulation histidine triad (HIT) protein Hit YP_001420623.1 ABC-type transporter ATP-binding protein; protein secretion to extracellular matrix YP_001420624.1 ABC-type transporter;secretion to extracellular matrix YP_001420625.1 ABC-type transporter; protein secretion to extracellular matrix YP_001420626.1 aminoacylase YhaA YP_001420627.1 hypothetical protein YhfA YP_001420628.1 hypothetical protein YhgC YP_001420629.1 penicillin-binding protein 2C PbpF YP_001420630.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_001420631.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_001420632.1 catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX YP_001420633.1 HTH-type transcriptional regulator YhgD YP_001420634.1 conserved hypothetical protein YhgE YP_001420635.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis YP_001420636.1 glucanase/aminopeptidase YP_001420637.1 proton/sodium-glutamate symport protein GltT YP_001420638.1 hypothetical protein YhfH YP_001420639.1 conserved hypothetical protein YhfI YP_001420640.1 lipoate-protein ligase YhfJ YP_001420641.1 hypothetical protein YhfK YP_001420642.1 activates fatty acids by binding to coenzyme A YP_001420643.1 hypothetical protein YhfM YP_001420644.1 conserved hypothetical protein YhfN YP_001420645.1 serine alkaline protease (subtilisin E) AprE YP_001420646.1 conserved hypothetical protein YhfQ YP_001420647.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase YhfR YP_001420648.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001420649.1 activates fatty acids by binding to coenzyme A YP_001420650.1 biotin biosynthesis protein YhfU YP_001420651.1 haem-based aerotactic transducer HemAT YP_001420652.1 Rieske [2Fe-2S] iron-sulfur protein YhfW YP_001420653.1 alcohol dehydrogenase YhxC YP_001420654.1 hypothetical protein YhzC YP_001420655.1 competence transcription factor (CTF) ComK YP_001420659.1 hypothetical protein YrpD YP_001420660.1 hypothetical protein YhjA YP_001420662.1 metabolite permease YhjB YP_001420663.1 conserved hypothetical protein YhjC YP_001420664.1 hypothetical protein YhjD YP_001420665.1 conserved hypothetical protein YhjE YP_001420666.1 type I signal peptidase SipV YP_001420667.1 monooxygenase YhjG YP_001420668.1 conserved hypothetical protein YhjH YP_001420669.1 conserved hypothetical protein YhjN YP_001420670.1 multidrug resistance protein II Blt YP_001420672.1 conserved hypothetical protein YhjR YP_001420673.1 conserved membrane protein YdfS YP_001420674.1 ATP-dependent deoxyribonuclease (subunit B) AddB YP_001420675.1 ATP-dependent deoxyribonuclease (subunit A) AddA YP_001420676.1 exonuclease SbcD YP_001420677.1 DNA exonuclease YirY YP_001420678.1 hypothetical protein YisB YP_001420679.1 spore germination protein GerPF YP_001420680.1 spore germination protein GerPE YP_001420681.1 spore germination protein GerPD YP_001420682.1 spore germination protein GerPC YP_001420683.1 spore germination protein GerPB YP_001420684.1 spore germination protein GerPA YP_001420685.1 hypothetical protein YisI YP_001420686.1 5-oxo-1,2,5-tricarboxilic-3-penten aciddecarboxylase YisK YP_001420687.1 conserved hypothetical protein YisL YP_001420689.1 conserved hypothetical protein YisN YP_001420690.1 asparagine synthetase [glutamine-hydrolyzing] III AsnO YP_001420691.1 phytoene synthase YisP YP_001420692.1 conserved hypothetical protein YisQ YP_001420693.1 HTH-type transcriptional regulator YisR YP_001420694.1 nuclease inhibitor YisT YP_001420695.1 conserved hypothetical protein YisX YP_001420696.1 hypothetical protein YitI YP_001420697.1 catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions YP_001420698.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_001420699.1 conserved hypothetical protein YitL YP_001420702.1 cytochrome P450 152A1 CypC YP_001420703.1 conserved hypothetical protein YitS YP_001420704.1 conserved hypothetical protein YitT YP_001420705.1 intracellular proteinase inhibitor Ipi YP_001420708.1 conserved hypothetical protein YitU YP_001420709.1 conserved hypothetical protein YitV YP_001420710.1 conserved hypothetical protein YitW YP_001420711.1 catalyzes resistance to fosfomycin by the addition of a thiol cofactor YP_001420712.1 oxidoreductase YitY YP_001420713.1 multidrug resistance protein YitZ YP_001420714.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_001420715.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_001420716.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_001420717.1 acetylornithine aminotransferase ArgD YP_001420718.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_001420719.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_001420720.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_001420721.1 hypothetical protein YjzC YP_001420722.1 hypothetical protein YjzD YP_001420723.1 hypothetical protein YjaU YP_001420724.1 hypothetical protein YjaV YP_001420725.1 transcriptional activator protein med precursor Med YP_001420726.1 comG operon repressor ComZ YP_001420727.1 hypothetical protein YjzB YP_001420728.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_001420729.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_001420730.1 conserved hypothetical protein YjaZ YP_001420731.1 oligopeptide transport ATP-binding protein AppD YP_001420732.1 oligopeptide transport ATP-binding protein AppF YP_001420733.1 oligopeptide-binding protein AppA precursor YP_001420734.1 oligopeptide transport system permease protein AppB YP_001420735.1 oligopeptide transport system permease protein AppC YP_001420736.1 hypothetical protein YjbA YP_001420737.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001420738.1 oligopeptide ABC transporter (binding protein) OppA YP_001420739.1 oligopeptide ABC transporter (permease) OppB YP_001420740.1 oligopeptide ABC transporter (permease) OppC YP_001420741.1 oligopeptide ABC transporter (ATP-binding protein) OppD YP_001420742.1 oligopeptide ABC transporter (ATP-binding protein) OppF YP_001420744.1 hypothetical protein YjbC YP_001420745.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress YP_001420746.1 conserved hypothetical protein YjbE YP_001420747.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence YP_001420748.1 conserved hypothetical protein YjbF YP_001420749.1 oligopeptidase F YjbG YP_001420751.1 conserved hypothetical protein YjbH YP_001420752.1 conserved hypothetical protein YjbI YP_001420753.1 lytic transglycosylase YjbJ YP_001420754.1 conserved hypothetical protein YjbK YP_001420755.1 hypothetical protein YjbL YP_001420756.1 GTP pyrophosphokinase YjbM YP_001420757.1 catalyzes the phosphorylation of NAD to NADP YP_001420758.1 pseudouridine synthase YjbO YP_001420759.1 asymmetrical; catalyzes the formation of NTP and NMP from P(1),P(4)-bis(5'-nucleosyl) tetraphosphate; acts on bis(5'-guanosyl) tetraphosphate, bis(5'-xanthosyl)-tetraphosphate, on bis(5'-adenosyl)-tetraphosphate, and bis(5'-uridyl)-tetraphosphate YP_001420760.1 Na+/H+ antiporter YjbQ YP_001420761.1 transcriptional activator TenA YP_001420762.1 regulates the production of extracellular enzymes YP_001420763.1 glycine oxidase GoxB YP_001420764.1 hydroxyethylthiazole phosphate biosynthesis (thiamine biosynthesis) ThiS YP_001420765.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_001420766.1 catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways YP_001420767.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine YP_001420768.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_001420769.1 hypothetical protein YjbX YP_001420770.1 spore coat protein CotZ (insoluble fraction) CotZ YP_001420771.1 spore coat protein CotY YP_001420772.1 spore coat protein (insoluble fraction) CotX YP_001420773.1 spore coat protein (insoluble fraction) CotW YP_001420774.1 spore coat protein (insoluble fraction) CotV YP_001420775.1 conserved hypothetical protein YjcA YP_001420778.1 hypothetical protein YjcC YP_001420779.1 ATP-dependent DNA helicase YjcD YP_001420781.1 beta-lactamase II precursor (Penicillinase) (Cephalosporinase) Blm YP_001420785.1 conserved hypothetical protein YjcF YP_001420786.1 similar to 2'-5' RNA ligase YP_001420787.1 conserved hypothetical protein YcjH YP_001420788.1 catalyzes the formation of cysteine from cystathionine; in B. subtilis also has O-acetylhomoserine thiolyase activity YP_001420789.1 catalyzes the formation of L-homocysteine from cystathionine YP_001420791.1 similar to Bacillus subtilis skin element YokI YP_001420796.1 bacillus subtilis skin element like protein YqcG[bacteriophage SPBc2] YP_001420802.1 beta-lactamase precursor PenP YP_001420803.1 conserved hypothetical protein YjcS YP_001420804.1 membrane-bound transport protein YfjF YP_001420806.1 predicted arabinogalactan endo-1,4-beta-galactosidase YP_001420807.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism YP_001420808.1 UDP-glucose 4-epimerase YP_001420809.1 galactokinase YP_001420810.1 phosphotransferase system (PTS) lichenan-specific enzyme IIA component YP_001420811.1 phosphotransferase system cellobiose-specific component IIBC YP_001420812.1 catalyzes the formation of 6-phospho-galactose from a 6-phospho-beta-galactoside YP_001420813.1 COG1349; lactose phosphotransferase system repressor protein YP_001420814.1 COG0637; predicted phosphatase/phosphohexomutase YP_001420818.1 hypothetical protein YjfB YP_001420819.1 hypothetical protein YjgA YP_001420820.1 hypothetical protein YjgB YP_001420821.1 formate dehydrogenase alpha subunit YjgC YP_001420822.1 conserved hypothetical protein YjgD YP_001420823.1 cytochrome P450 YjiB YP_001420824.1 macrolide glycosyltransferase YjiC YP_001420825.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis YP_001420826.1 conserved hypothetical protein YjkA YP_001420827.1 amino acid ABC transporter (ATP-binding protein) YjkB YP_001420828.1 hypothetical protein YjlA YP_001420829.1 conserved hypothetical protein YjlB YP_001420830.1 conserved hypothetical protein YjlC YP_001420831.1 NADH dehydrogenase-like protein YjlD YP_001420832.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism YP_001420833.1 symporter symporter YjmB YP_001420834.1 transcriptional regulator (LacI family) ExuR YP_001420835.1 catalyzes the formation of D-tagaturonate from D-altronate YP_001420836.1 altronate hydrolase UxaA YP_001420837.1 conserved hypothetical protein YjnA YP_001420838.1 conserved hypothetical protein YjoA YP_001420839.1 response regulator aspartate phosphatase; cd00189, TPR, tetratricopeptide repeat domain; prevents sporulation by dephosphorylating Spo0F-P (and thus the phosphorelay) YP_001420840.1 quorum sensing peptide; phosphatase rapA inhibitor YP_001420841.1 N-acetylmuramoyl-L-alanine amidase XlyB YP_001420842.1 hypothetical protein YjqA YP_001420843.1 phage-related replication protein YjqB YP_001420844.1 phage-like element PBSX protein XkdA YP_001420845.1 transcriptional regulator of PBSX genes Xre YP_001420847.1 PBSX prophage protein XkdB YP_001420848.1 PBSX prophage protein XkdC YP_001420850.1 PBSX prophage protein XkdD YP_001420851.1 phage-like element PBSX protein XtrA YP_001420852.1 Positive regulatory protein that acts at the late promoter PL YP_001420853.1 PBSX phage terminase small subunit XtmA YP_001420854.1 hypothetical phage related protein YomR YP_001420855.1 hypothetical phage protein YomQ YP_001420856.1 phage-like element PBSX protein XkdX YP_001420857.1 phage-like element PBSX protein XepA YP_001420858.1 phage-like element PBSX protein XhlA YP_001420859.1 phage lysis protein holin XhlB YP_001420860.1 N-acetylmuramoyl-L-alanine amidase XlyA precursor (cell wall hydrolase) (Autolysin) YP_001420861.1 stage II sporulation protein SB (Antidote protein) SpoIISB YP_001420862.1 stage II sporulation protein SA (Killer protein) SpoIISA YP_001420863.1 low-affinity inorganic phosphate transporter Pit YP_001420864.1 conserved hypothetical protein YkaA YP_001420865.1 amino acid permease YkbA YP_001420866.1 conserved hypothetical protein YkcA YP_001420867.1 conserved hypothetical protein YkcB YP_001420868.1 glycosyl transferase YkcC YP_001420869.1 serine protease do-like HtrA YP_001420870.1 conserved hypothetical protein YubD YP_001420871.1 D-aminopeptidase DppA YP_001420872.1 dipeptide transport system permease protein DppB YP_001420873.1 dipeptide transport system permease protein DppC YP_001420874.1 dipeptide transport ATP-binding protein DppD YP_001420875.1 dipeptide-binding protein DppE precursor YP_001420876.1 conserved hypothetical protein YkfA YP_001420877.1 chloromuconate cycloisomerase YkfB YP_001420878.1 polysugar degrading enzyme YkfC YP_001420879.1 oligopeptide ABC transporter (ATPase component)YkfD YP_001420880.1 conserved hypothetical protein YkgB YP_001420881.1 conserved hypothetical protein YkgA YP_001420882.1 acyl-CoA thioester hydrolase YkhA YP_001420883.1 conserved hypothetical protein YkkB YP_001420884.1 Multidrug resistance protein YkkC YP_001420885.1 Multidrug resistance protein YkkD YP_001420886.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine YP_001420887.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_001420888.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_001420889.1 organic hydroperoxide resistance protein OhrA YP_001420890.1 organic hydroperoxide resistance transcriptionalregulator OhrR YP_001420891.1 organic hydroperoxide resistance protein (general stress protein 17o) (Gsp17o) OhrB YP_001420897.1 activator of nucleoside metabolism YP_001420898.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_001420899.1 major intracellular serine protease precursor (ISP-1) IspA YP_001420900.1 sigma-H activator YkoB YP_001420901.1 conserved hypothetical protein YkoC YP_001420902.1 cation ABC transporter (ATP-binding protein) YkoD YP_001420903.1 conserved hypothetical protein YkoE YP_001420904.1 conserved hypothetical protein YdhD YP_001420905.1 hypothetical protein YkzD YP_001420906.1 divalent cation transporter YkoK YP_001420907.1 HTH-type transcriptional regulator TnrA YP_001420908.1 hypothetical protein YkzB YP_001420909.1 stress response protein YkoL YP_001420910.1 transcriptional regulator (MarR family)YkoM YP_001420911.1 hypothetical protein YkoP YP_001420912.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA YP_001420913.1 conserved hypothetical protein YkoV YP_001420914.1 alkaline phosphatase YkoX YP_001420915.1 toxic anion resistance protein YkoY YP_001420916.1 Heat shock-induced YP_001420917.1 hypothetical protein YkrI YP_001420918.1 small acid-soluble spore protein (alpha/beta-type SASP) SspD YP_001420919.1 hypothetical protein YkrK YP_001420920.1 metalloprotease YP_001420921.1 transporter (membrane component) YkrM YP_001420923.1 hypothetical protein YkzE YP_001420924.1 conserved hypothetical protein YkrP YP_001420925.1 two-component sensor histidine kinase homolog KinE YP_001420926.1 methylated-DNA--protein-cysteine methyltransferase Ogt YP_001420927.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway YP_001420928.1 phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway YP_001420929.1 conserved hypothetical protein YkrU YP_001420930.1 produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however YP_001420931.1 converts 2,3-diketo-5-methylthiopentyl-1-phosphate into 2-hydroxy 3-keto-5-methylthiopentenyl-1-phosphate; involved in methionine salvage YP_001420932.1 converts 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate to 1,2-dihydroxy-3-keto-5-methylthiopentene; involved in methionine salvage YP_001420933.1 converts methylthioribulose-1-phosphate into 2,3-diketo-5-methylthiopentyl-1-phosphate; involved in methionine salvage YP_001420934.1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase MtnD YP_001420935.1 stage 0 sporulation regulatory protein Spo0E YP_001420936.1 two-component sensor histidine kinase KinD YP_001420937.1 transcription regulator MarR family homolog YkvE YP_001420938.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_001420939.1 With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. YP_001420940.1 ATP-dependent Clp protease-like (class III stress gene) ClpE YP_001420941.1 conserved hypothetical protein YkvI YP_001420943.1 conserved hypothetical protein YkvJ YP_001420944.1 6-pyruvoyl tetrahydrobiopterin synthase homolog YkvK YP_001420945.1 conserved hypothetical protein YkvL YP_001420946.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_001420947.1 conserved hypothetical protein YkvN YP_001420948.1 conserved hypothetical protein YkvO YP_001420950.1 hypothetical protein YkvR YP_001420953.1 spore cortex-lytic enzyme YkvT YP_001420954.1 sporulation protein YkvU YP_001420955.1 sporulation thiol-disulfide oxidoreductase A precursor StoA YP_001420956.1 cation transport ATPase YkvW YP_001420957.1 conserved hypothetical protein YkvY YP_001420958.1 HTH-type transcriptional regulator YkvZ YP_001420959.1 transcriptional antiterminator (BglG family) GlcT YP_001420960.1 phosphotransferase system (PTS) glucose-specificenzyme IICBA component PtsG YP_001420961.1 phosphocarrier protein HPr component PtsH YP_001420962.1 phosphoenolpyruvate-protein phosphotransferase PtsI YP_001420963.1 transcriptional regulator SplA YP_001420964.1 spore photoproduct lyase SpIB YP_001420965.1 methyl-accepting chemotaxis protein McpC YP_001420966.1 hypothetical oxidoreductase YkwC YP_001420969.1 conserved hypothetical protein YkwD YP_001420970.1 penicillin-binding protein dimerisationdomain YkuA YP_001420971.1 sporulation kinase A (stage II sporulation protein J) KinA YP_001420972.1 aminotransferase PatA YP_001420974.1 chemotaxis protein CheV YP_001420975.1 hypothetical protein YkyB YP_001420976.1 hypothetical protein YkuC YP_001420977.1 conserved hypothetical protein YkuD YP_001420978.1 phosphoesterase YkuE YP_001420979.1 hypothetical oxidoreductase YkuF YP_001420980.1 conserved hypothetical protein YkuI YP_001420981.1 hypothetical protein YkuJ YP_001420982.1 conserved hypothetical protein YkuK YP_001420983.1 hypothetical protein YkzF YP_001420984.1 conserved hypothetical protein YkuL YP_001420985.1 HTH-type transcriptional regulator CcpC YP_001420986.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_001420987.1 conserved hypothetical protein YkuO YP_001420988.1 probable flavodoxin-2 YkuP YP_001420989.1 etrahydrodipicolinate succinylase YkuQ YP_001420990.1 hippurate hydrolase homolog YkuR YP_001420991.1 conserved hypothetical protein YkuS YP_001420992.1 conserved hypothetical protein YkuT YP_001420993.1 hypothetical protein YkuV YP_001420994.1 comK repressor Rok YP_001420995.1 conserved hypothetical protein YknT YP_001420996.1 Molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_001420997.1 catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways YP_001420998.1 molybdopterin biosynthesis protein MoeA YP_001420999.1 molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_001421000.1 molybdenum cofactor biosynthesis protein MoaE YP_001421001.1 molybdopterin converting factor (subunit I) MoaD YP_001421002.1 hypothetical protein YknW YP_001421003.1 secretion protein YknX YP_001421004.1 ABC transporter (ATP-binding protein) YknY YP_001421005.1 ABC transporter permease YknZ YP_001421006.1 transcription repressor of fructose operon FruR YP_001421007.1 fructose 1-phosphate kinase FruK YP_001421008.1 phosphotransferase system (PTS) fructose-specific enzyme IIABC component FruA YP_001421009.1 type I signal peptidase SipT YP_001421010.1 hypothetical protein YkoA YP_001421011.1 ABC transporter (ATP-binding protein) YkpA YP_001421012.1 thiamin biosynthesis homolog YkpB YP_001421013.1 aminopeptidase AmpS YP_001421014.1 hypothetical protein YkpC YP_001421015.1 cell-shape determining protein MreBH YP_001421016.1 transition state regulator Abh YP_001421017.1 sporulation kinase C (KinC) YP_001421018.1 conserved hypothetical protein YkqA YP_001421019.1 conserved hypothetical protein YkqB YP_001421020.1 adenine deaminase AdeC YP_001421021.1 conserved hypothetical protein YkqC YP_001421022.1 hypothetical protein YkzG YP_001421023.1 conserved hypothetical protein YkrA YP_001421024.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001421025.1 hypothetical protein YkyA YP_001421027.1 macrolactin synthesis; malonyl-CoA transacylase [AT]/oxidoreductase [OR] YP_001421028.1 macrolactin synthesis; polyketide synthase of type I YP_001421029.1 macrolactin synthesis; polyketide synthase of type I YP_001421030.1 macrolactin synthesis; polyketide synthase of type I YP_001421031.1 macrolactin synthesis; polyketide synthase of type I YP_001421032.1 macrolactin synthesis; polyketide synthase of type I YP_001421033.1 macrolactin synthesis; polyketide synthase of type I YP_001421034.1 macrolactin synthesis; polyketide synthase of type I YP_001421035.1 macrolactin synthesis; penicillin binding protein YP_001421036.1 pyruvate dehydrogenase E1 alpha subunit PdhA YP_001421037.1 pyruvate dehydrogenase E1 beta subunit PdhB YP_001421038.1 pyruvate dehydrogenase (dihydrolipoamide acetyltransferase E2 subunit) PdhC YP_001421039.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_001421040.1 small peptidoglycan-associated lipoprotein Slp YP_001421043.1 arginine/lysine decarboxylase SpeA YP_001421044.1 hypothetical protein YktA YP_001421045.1 hypothetical protein YktB YP_001421046.1 hypothetical protein YkzI YP_001421047.1 inositol-1-monophosphatase SuhB YP_001421048.1 conserved hypothetical protein YkzC YP_001421049.1 bacillolysin precursor NprE YP_001421050.1 hypothetical protein YlaA1 YP_001421051.1 hypothetical protein YlaA2 YP_001421052.1 hypothetical protein YlaB YP_001421053.1 RNA polymerase sigma-70 factor YlaC YP_001421054.1 hypothetical protein YlaD YP_001421055.1 hypothetical protein YlaE YP_001421056.1 hypothetical protein YlaF YP_001421057.1 GTP-binding elongation factor YlaG YP_001421058.1 hypothetical protein YlaH YP_001421059.1 hypothetical protein YlaI YP_001421060.1 hypothetical protein YlaJ YP_001421061.1 phosphate starvation inducible protein YlaK YP_001421062.1 hypothetical protein YlaL YP_001421063.1 catalyzes the formation of glutamate from glutamine YP_001421064.1 depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; ligand binding protein YP_001421065.1 cell division protein FtsW YP_001421066.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_001421067.1 cytochrome aa3-controlling protein CtaA YP_001421068.1 converts protoheme IX and farnesyl diphosphate to heme O YP_001421069.1 cytochrome c oxidase subunit II precursor CtaC YP_001421070.1 cytochrome caa3 oxidase (subunit I) CtaD YP_001421071.1 cytochrome caa3 oxidase (subunit III) CtaE YP_001421072.1 cytochrome caa3 oxidase (subunit IV) CtaF YP_001421073.1 conserved hypothetical protein CtaG YP_001421074.1 hypothetical protein YlbA YP_001421075.1 hypothetical protein YlbB YP_001421076.1 conserved hypothetical protein YlbC YP_001421077.1 hypothetical protein YlbD YP_001421078.1 hypothetical protein YlbE YP_001421079.1 positive regulator of ComK; control of community development YP_001421080.1 hypothetical protein YlbG YP_001421081.1 conserved hypothetical protein YlbH YP_001421082.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_001421083.1 conserved hypothetical protein YlbJ YP_001421084.1 conserved hypothetical protein YlbK YP_001421085.1 conserved hypothetical protein YlbL YP_001421086.1 conserved hypothetical protein YlbM YP_001421087.1 conserved hypothetical protein YlbN YP_001421088.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_001421089.1 hypothetical protein YlbO YP_001421090.1 conserved hypothetical protein YlbP YP_001421091.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis YP_001421092.1 conserved hypothetical protein YllA YP_001421093.1 MraZ; UPF0040; crystal structure shows similarity to AbrB YP_001421094.1 conserved hypothetical protein YlxA YP_001421095.1 cell-division protein FtsL YP_001421096.1 penicillin-binding protein IIB PbpB YP_001421097.1 stage V sporulation protein SpoVD YP_001421098.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_001421099.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_001421100.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_001421101.1 stage V sporulation protein SpoVE YP_001421102.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_001421103.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_001421104.1 cell-division initiation protein DivIB YP_001421105.1 cell-division protein FtsA YP_001421106.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_001421107.1 bacillopeptidase F precursor; upregulated by plant exudate YP_001421108.1 sporulation sigma-E factor processing peptidase (stage II sporulation protein GA) SpoIIGA YP_001421109.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation YP_001421110.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin YP_001421111.1 ABC transporter (ATP-binding protein) YlmA YP_001421112.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_001421113.1 conserved hypothetical protein YlmC YP_001421114.1 conserved hypothetical protein YlmD YP_001421115.1 conserved hypothetical protein YlmE YP_001421116.1 conserved hypothetical protein YlmF YP_001421117.1 conserved hypothetical protein YlmG YP_001421118.1 conserved hypothetical protein YlmH YP_001421119.1 cell-division initiation protein DivIVA YP_001421120.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme YP_001421121.1 conserved hypothetical protein YlyA YP_001421122.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_001421123.1 pseudouridylate synthase YlyB YP_001421124.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_001421125.1 uracil permease PyrP YP_001421126.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_001421127.1 dihydroorotase PyrC YP_001421128.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_001421129.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_001421130.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+) YP_001421131.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits YP_001421132.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_001421133.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001421134.1 phosphoadenosine phosphosulfate reductase CysH YP_001421135.1 sulfate permease CysP YP_001421136.1 ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms YP_001421137.1 adenylyl-sulfate kinase CysC YP_001421138.1 uroporphyrin-III C-methyltransferase YlnD YP_001421139.1 sirohydrochlorin ferrochelatase SirB YP_001421140.1 uroporphyrin-III C-methyltransferase YlnF YP_001421141.1 uroporphyrin-III C-methyltransferase YloA YP_001421142.1 calcium-transporting ATPase YloB YP_001421143.1 conserved hypothetical protein YloC YP_001421144.1 conserved hypothetical protein YlzA YP_001421145.1 Essential for recycling GMP and indirectly, cGMP YP_001421146.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_001421147.1 pantothenate metabolism flavoprotein YloI YP_001421148.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_001421149.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_001421150.1 methionyl-tRNA formyltransferase Fmt YP_001421151.1 ribosomal RNA small subunit methyltransferase RsmB YP_001421152.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_001421153.1 protein phosphatase PrpC YP_001421154.1 serine/threonine-protein kinase PrkC YP_001421155.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_001421156.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_001421157.1 thiamin pyrophosphokinase ThiN YP_001421158.1 involved in the production of the spore cortex and coat YP_001421159.1 required for 70S ribosome assembly YP_001421160.1 conserved hypothetical protein YloU YP_001421161.1 conserved hypothetical protein YloV YP_001421162.1 L-serine dehydratase (beta chain) SdaAB YP_001421163.1 L-serine dehydratase (alpha chain) SdaAA YP_001421164.1 catalyzes branch migration in Holliday junction intermediates YP_001421165.1 negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria YP_001421166.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_001421167.1 malonyl CoA-acyl carrier protein transacylase FabD YP_001421168.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG YP_001421169.1 carries the fatty acid chain in fatty acid biosynthesis YP_001421170.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_001421171.1 chromosome partition protein Smc YP_001421172.1 cell division protein FtsY homolog YP_001421174.1 conserved hypothetical protein YlxM YP_001421175.1 signal recognition particle-like (SRP) component Ffh YP_001421176.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_001421177.1 conserved hypothetical protein YlqC YP_001421178.1 hypothetical protein YlqD YP_001421179.1 Essential for efficient processing of 16S rRNA YP_001421180.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_001421181.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_001421182.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_001421183.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_001421184.1 hypothetical protein YlqG YP_001421185.1 conserved hypothetical protein YlqH YP_001421186.1 catalyzes the interconversion of succinyl-CoA and succinate YP_001421187.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_001421188.1 DNA processing protein Smf YP_001421189.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_001421190.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_001421191.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_001421192.1 heat shock protein involved in degradation of misfolded proteins YP_001421193.1 heat shock protein involved in degradation of misfolded proteins YP_001421194.1 GTP binding protein; CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_001421195.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella YP_001421196.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_001421197.1 forms a junction between the M-ring and FlgB during flagella biosynthesis YP_001421198.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_001421199.1 One of three proteins involved in switching the direction of the flagellar rotation YP_001421200.1 binds to and inhibits the function of flagella specific ATPase FliI YP_001421201.1 involved in type III protein export during flagellum assembly YP_001421202.1 rod/hook and filament chaperone YP_001421203.1 conserved hypothetical protein YlxF YP_001421204.1 flagellar hook-length control protein FliK YP_001421205.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod YP_001421206.1 makes up the distal portion of the flagellar basal body rod YP_001421208.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring YP_001421209.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_001421210.1 One of three proteins involved in switching the direction of the flagellar rotation YP_001421211.1 two-component response regulator CheY YP_001421212.1 possible structural component of the flagellum that anchors the rod to the membrane YP_001421213.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_001421214.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus YP_001421215.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus YP_001421216.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_001421217.1 membrane protein involved in the flagellar export apparatus YP_001421218.1 positive regulator of class III flagellar genes YP_001421219.1 conserved hypothetical protein YlxH YP_001421220.1 chemotaxis response regulator; regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins YP_001421221.1 two-component sensor histidine kinase; COG0643 Chemotaxis protein; cell motility and secretion/signal transduction mechanism YP_001421222.1 chemotaxis protein CheW YP_001421223.1 chemotaxis protein CheC YP_001421224.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors YP_001421225.1 expressed in late exponential phase; controls the expression of genes coding cell surface proteins involved in chemotaxis, flagellar assembly, and autolysis YP_001421226.1 swarming motility protein YP_001421227.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_001421228.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_001421229.1 Catalyzes the phosphorylation of UMP to UDP YP_001421230.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_001421231.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_001421232.1 phosphatidate cytidylyltransferase (CDP-diglyceride synthase) CdsA YP_001421233.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_001421234.1 zinc metalloprotease YluC YP_001421235.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_001421236.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity YP_001421237.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_001421238.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_001421239.1 conserved hypothetical protein YlxR YP_001421240.1 ribosomal protein L7AE family YlxQ YP_001421241.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_001421242.1 conserved hypothetical protein YlxP YP_001421243.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_001421244.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_001421245.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_001421246.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_001421247.1 polynucleotide phosphorylase (PNPase) PnpA YP_001421248.1 deacetylase YlxY YP_001421249.1 zinc protease MlpA YP_001421250.1 conserved hypothetical protein YmxH YP_001421251.1 catalyzes the synthesis of dipicolinic acid from dihydroxydipicolinic acid; plays a role in spore heat resistance YP_001421252.1 involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme YP_001421253.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_001421254.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive YP_001421255.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_001421256.1 conserved hypothetical protein YmfA YP_001421257.1 translocation-enhancing protein TepA YP_001421259.1 DNA translocase FtsK YP_001421260.1 hypothetical transcriptional regulator YmfC YP_001421265.1 conserved hypothetical protein YmfH YP_001421266.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001421267.1 hypothetical protein YmfJ YP_001421269.1 conserved hypothetical protein YmfM YP_001421270.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA YP_001421271.1 competence-damage inducible protein CinA YP_001421272.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_001421273.1 penicillin-binding protein PbpX YP_001421274.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_001421275.1 conserved hypothetical protein YmdB YP_001421276.1 stage V sporulation protein S (SpoVS) YP_001421277.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism YP_001421278.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_001421279.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_001421280.1 conserved hypothetical protein; control of community development YP_001421281.1 outer spore coat protein CotE YP_001421282.1 This protein performs the mismatch recognition step during the DNA repair process YP_001421283.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_001421284.1 bacillaene synthesis; hydroxyacylglutathione hydrolase YP_001421285.1 bacillaene synthesis; malonyl-CoA-[acyl-carrier-protein] transacylase [AT] YP_001421286.1 bacillaene synthesis; malonyl-CoA-[acyl-carrier-protein] transacylase [AT]/oxidoreductase [OR] YP_001421287.1 bacillaene synthesis; malonyl-CoA-[acyl-carrier protein] transacylase [AT]/oxidoreductase [OR] YP_001421288.1 bacillaene synthesis; Acyl carrier proteins are involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; this ACP may be involved in the biosynthesis of lipopeptide antibiotics YP_001421289.1 bacillaene synthesis; 3-hydroxy-3-methylglutaryl CoA synthase YP_001421290.1 bacillaene synthesis; involved in polyketide synthesis YP_001421291.1 bacillaene synthesis; involved in polyketide production YP_001421292.1 bacillaene synthesis; hybrid NRPS/PKS protein YP_001421293.1 bacillaene synthesis; polyketide synthase of type I YP_001421294.1 bacillaene synthesis; polyketide synthase of type I YP_001421295.1 bacillaene synthesis; hybrid NRPS/PKS protein YP_001421296.1 bacillaene synthesis; polyketide synthase of type I YP_001421297.1 bacillaene synthesis; cytochrome P450 'oxidase' 107K1 YP_001421298.1 sporulation-specific extracellular nuclease precursor NucB YP_001421299.1 conserved membrane protein YoaK YP_001421300.1 hypothetical protein YmzB YP_001421301.1 intracellular alkaline serine proteinase AprX YP_001421302.1 phage- replication protein homolog YmaC YP_001421303.1 conserved hypothetical protein YmaD YP_001421304.1 multidrug resistance protein EbrB YP_001421305.1 multidrug resistance protein EbrA YP_001421306.1 hypothetical protein YmaF YP_001421307.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_001421308.1 Stimulates the elongation of poly(A) tails YP_001421309.1 hypothetical protein YmzC YP_001421310.1 hypothetical protein YmzA YP_001421311.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF YP_001421312.1 Catalyzes the rate-limiting step in dNTP synthesis YP_001421313.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_001421314.1 conserved hypothetical protein YmaB YP_001421315.1 sporulation-specific N-acetylmuramoyl-L-alanine amidase CwlC YP_001421316.1 spore formation protein SpoVK YP_001421317.1 GTP-binding protein YnbA YP_001421318.1 conserved hypothetical protein YnbB YP_001421319.1 glutamine synthetase transcription repressor GlnR YP_001421320.1 glutamine synthetase GlnA YP_001421326.1 hypothetical symporter; transport of oligosaccharides YP_001421327.1 xylan beta-1,4-xylosidase YP_001421328.1 xylose operon repressor protein XylR YP_001421329.1 catalyzes the interconversion of D-xylose to D-xylulose YP_001421330.1 xylulose kinase XylB YP_001421331.1 phosphoenolpyruvate synthase Pps YP_001421338.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs YP_001421339.1 hypothetical protein YoaW YP_001421340.1 hypothetical protein YopD YP_001421341.1 hypothetical protein YoaP YP_001421344.1 hypothetical protein YoaO YP_001421346.1 hypothetical protein YnaE YP_001421353.1 conserved hypothetical protein YobO YP_001421354.1 deoxyuridine 5`-triphosphate pyrophosphatase YncF YP_001421355.1 conserved hypothetical protein YndL YP_001421357.1 hypothetical protein YndM YP_001421359.1 Represses a number of genes involved in the response to DNA damage YP_001421360.1 hypothetical protein YneA YP_001421361.1 conserved hypothetical protein YneB YP_001421362.1 conserved hypothetical protein YnzC YP_001421363.1 transketolase Tkt YP_001421364.1 hypothetical protein YneE YP_001421365.1 conserved hypothetical protein YneF YP_001421366.1 hypothetical protein YnzD YP_001421367.1 integral membrane protein cytochrome c-type biogenesis protein CcdA YP_001421368.1 conserved hypothetical protein CcdB YP_001421369.1 conserved hypothetical protein CcdC YP_001421370.1 hypothetical protein YneK YP_001421371.1 spore coat protein M (CotM) YP_001421372.1 SASP P; found in forespore compartment YP_001421373.1 SASP O; found in forespore compartment YP_001421374.1 Catalyzes the conversion of citrate to isocitrate YP_001421375.1 conserved hypothetical protein YneN YP_001421377.1 SASP N; found in forespore compartment YP_001421378.1 small acid-soluble spore protein (thioredoxin-like protein) Tlp YP_001421379.1 conserved hypothetical protein YneP YP_001421380.1 hypothetical protein YneQ YP_001421381.1 conserved hypothetical protein YneR YP_001421382.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_001421383.1 conserved hypothetical protein YneT YP_001421384.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001421385.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_001421387.1 hypothetical protein YnfC YP_001421388.1 amino acid carrier protein AlsT YP_001421390.1 conserved hypothetical protein YjmD YP_001421391.1 2-keto-3-deoxygluconate-6-phosphate aldolase KdgA YP_001421392.1 catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate YP_001421393.1 Converts D-mannonate to D-mannuronate YP_001421394.1 negative transcriptional regulator (LacI family) KdgR YP_001421395.1 hexuronate transporter ExuT YP_001421396.1 hypothetical protein YndG YP_001421397.1 hypothetical protein YndH YP_001421398.1 hypothetical protein YndJ YP_001421404.1 endo-1,4-beta-glucanase YP_001421406.1 two-component system sensor histidine kinase; cd00075, HATPase_c,Histidine kinase-like ATPases YP_001421407.1 two-component system response regulator; COG0745, OmpR like RR consisting of a CheY-leke receiver domain and a winged-helix-DNA-binding domain [signal transduction mechanism] YP_001421408.1 conserved hypothetical protein YnfF YP_001421409.1 endo-1,4-beta-xylanase D precursor YP_001421410.1 nonribosomal synthesis of bacillomycin D; bacillomycin D synthetase C YP_001421411.1 nonribosomal synthesis of bacillomycin D; bacillomycin D synthetase B YP_001421412.1 nonribosomal synthesis of bacillomycin D; bacillomycin D synthetase A YP_001421413.1 nonribosomal synthesis of bacillomycin D; malonyl-CoA transacylase YP_001421414.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_001421415.1 succinyl CoA:3-oxoacid CoA-transferase (subunit B) ScoB YP_001421416.1 Succinyl CoA:3-oxoacid CoA-transferase (subunit A) ScoA YP_001421417.1 conserved hypothetical protein YxjC YP_001421418.1 cytochrome P450 enzyme BioI YP_001421419.1 catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine YP_001421420.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_001421421.1 8-amino-7-oxononanoate synthase BioF YP_001421422.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_001421423.1 catalyzes the formation of pimeloyl-CoA from pimelate and coenzyme A YP_001421424.1 conserved hypothetical protein YngA YP_001421425.1 UTP-glucose-1-phosphate uridylytransferase YngB YP_001421426.1 conserved hypothetical protein YngC YP_001421427.1 propionyl-CoA carboxylase YngE YP_001421428.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001421429.1 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA YP_001421430.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_001421431.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_001421432.1 activates fatty acids by binding to coenzyme A YP_001421433.1 Acyl-CoA dehydrogenase YngJ YP_001421434.1 conserved hypothetical protein YngK YP_001421435.1 conserved hypothetical protein YngL YP_001421436.1 nonribosomal fengycin synthesis; COG1020; fengycin synthetase E YP_001421437.1 nonribosomal fengycin synthesis; COG1020; fengycin synthetase D YP_001421438.1 nonribosomal fengycin synthesis; COG1020; fengycin synthetase C YP_001421439.1 nonribosomal fengycin synthesis; COG1020; fengycin synthetase B YP_001421440.1 nonribosomal fengycin synthesis; COG1020; fengycin synthetase A YP_001421441.1 penicillin-binding protein DacC YP_001421442.1 conserved hypothetical protein YoxA YP_001421443.1 conserved hypothetical protein YoeA YP_001421444.1 hypothetical protein YoeB YP_001421446.1 hypothetical protein YoeD YP_001421447.1 gamma-glutamyltranspeptidase; upregulated by plant exudate YP_001421448.1 conserved hypothetical protein YbcL YP_001421451.1 transcriptional regulator YofA YP_001421452.1 alcohol dehydrogenase YogA YP_001421454.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate YP_001421455.1 glutamate synthase [NADPH] large subunit GltA YP_001421456.1 HTH-type transcriptional regulator GltC YP_001421457.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_001421458.1 pyrroline-5-carboxylate reductase ProH YP_001421459.1 replication terminator protein Rtp YP_001421464.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001421465.1 conserved hypothetical protein YoxC YP_001421466.1 hypothetical protein YoxB YP_001421467.1 conserved hypothetical protein YoaB YP_001421468.1 xylulokinase YoaC YP_001421469.1 phosphoglycerate dehydrogenase YoaD YP_001421470.1 formate dehydrogenase YoaE YP_001421471.1 hypothetical protein YoaF YP_001421475.1 hypothetical protein YobK YP_001421476.1 hypothetical protein YobL YP_001421477.1 molecular chaperone CsaA YP_001421478.1 transcriptional regulator YobQ YP_001421479.1 hypothetical protein YobS YP_001421480.1 conserved hypothetical protein YobT YP_001421481.1 hypothetical protein YobW YP_001421482.1 transcriptional regulator YozA YP_001421483.1 conserved hypothetical protein YocA YP_001421484.1 conserved hypothetical protein YozB YP_001421485.1 hypothetical protein YocB YP_001421486.1 hypothetical protein YocC YP_001421487.1 conserved hypothetical protein YocD YP_001421489.1 cell-wall binding protein YocH YP_001421490.1 ATP-dependent DNA helicase YocI YP_001421491.1 hypothetical protein YocL YP_001421493.1 hypothetical protein YocM YP_001421494.1 hypothetical protein YozN YP_001421495.1 hypothetical protein YocN YP_001421496.1 hypothetical protein YozO YP_001421498.1 hypothetical protein YozC YP_001421499.1 indol 3-acet-aldehyde dehydrogenase; involved in Trp dependent IAA synthesis. Mutant dhaS was found impaired in IAA synthesis and plant growth promotion YP_001421500.1 squalene-hopene cyclase SqhC YP_001421501.1 superoxide dismutase SodF YP_001421502.1 sodium-dependent transporter YocR YP_001421503.1 sodium-dependent transporter YocS YP_001421505.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_001421506.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_001421507.1 conserved hypothetical protein YojO YP_001421508.1 nitric-oxide reductase YojN YP_001421509.1 superoxide dismutase YojM YP_001421510.1 conserved hypothetical protein YojL YP_001421511.1 macrolide glucosyltransferase YojK YP_001421512.1 conserved hypothetical protein YojJ YP_001421513.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones YP_001421514.1 conserved hypothetical protein YojH YP_001421515.1 conserved hypothetical protein YojG YP_001421516.1 conserved hypothetical protein YojF YP_001421518.1 hypothetical protein YojE YP_001421519.1 hypothetical protein YozR YP_001421521.1 conserved hypothetical protein YodA YP_001421522.1 hypothetical protein YoaQ YP_001421523.1 conserved hypothetical protein YodB YP_001421524.1 nitroreductase YodC YP_001421525.1 conserved hypothetical protein YodD YP_001421526.1 conserved hypothetical protein YodE YP_001421527.1 proline permease homolog YodF YP_001421529.1 6-phospho-beta-glucosidase BglA YP_001421530.1 transcriptional regulator YydK YP_001421531.1 carboxy-terminal processing protease CtpA YP_001421532.1 conserved hypothetical protein YodH YP_001421533.1 hypothetical protein YodI YP_001421534.1 D-alanyl-D-alanine carboxypeptidase YodJ YP_001421535.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_001421537.1 hypothetical protein YodL YP_001421538.1 conserved hypothetical protein YodM YP_001421539.1 hypothetical protein YozD YP_001421541.1 hypothetical protein YodN YP_001421543.1 hypothetical protein YozE YP_001421544.1 hypothetical protein YokU YP_001421545.1 L-lysine 2,3-aminomutase KamA YP_001421546.1 conserved hypothetical protein YodP YP_001421547.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_001421548.1 coenzyme A transferase , beta subunit YodR YP_001421549.1 coenzyme A transferase , alpha subunit YodS YP_001421550.1 aminotransferase class-III protein YodT YP_001421551.1 conserved hypothetical protein YosT YP_001421552.1 spore maturation protein CgeE YP_001421553.1 spore maturation protein CgeD YP_001421554.1 spore maturation protein CgeC YP_001421555.1 spore maturation protein CgeA YP_001421556.1 spore maturation protein CgeB YP_001421557.1 3-phytase precursor (Myo-inositol-hexaphosphate 3-phosphohydrolase) YP_001421558.1 capsular polysaccharide biosynthesis protein homolog YodU YP_001421559.1 conserved hypothetical protein [bacteriophage SPBc2] YotN YP_001421560.1 hypothetical protein YobA YP_001421562.1 hypothetical protein [bacteriophage SPBc2] YorC YP_001421563.1 hypothetical protein [bacteriophage SPBc2] YoqO YP_001421564.1 hypothetical protein [bacteriophage SPBc2] YoqN YP_001421565.1 hypothetical protein [bacteriophage SPBc2] YoqH YP_001421566.1 response regulator aspartate phosphatase; prevents sporulation by dephosphorylating RR YP_001421567.1 UV-damage repair protein UvrX YP_001421572.1 conserved membrane protein YrkJ1 YP_001421573.1 hypothetical protein [bacteriophage SPBc2] YolB YP_001421574.1 hypothetical protein [bacteriophage SPBc2] YokK YP_001421575.1 hypothetical protein [bacteriophage SPBc2] YokI1 YP_001421576.1 site-specific recombinase [bacteriophage SPBc2] YokA YP_001421577.1 conserved hypothetical protein YpqP YP_001421578.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress YP_001421579.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress YP_001421580.1 transcription regulator MarR family YpoP YP_001421581.1 hypothetical protein YpmS YP_001421582.1 conserved hypothetical protein YpmR YP_001421583.1 conserved hypothetical protein YpmQ YP_001421584.1 conserved hypothetical protein YpmP YP_001421585.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic YP_001421586.1 sigma L dependent transcriptional regulator YplP YP_001421587.1 membrane protein, Hemolysin III homologYplQ YP_001421588.1 hypothetical protein YpkP YP_001421589.1 dihydrofolate reductase DfrA YP_001421590.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_001421591.1 hypothetical protein YpjP YP_001421592.1 conserved hypothetical protein YpiP YP_001421593.1 conserved hypothetical protein YphP YP_001421594.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_001421595.1 conserved hypothetical protein YpgR YP_001421596.1 conserved hypothetical protein YpgQ YP_001421597.1 glutathione peroxidase BsaA YP_001421598.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_001421599.1 processive; catalyzes the formation of mono-, di- and tri-glucosyldiacylglycerol by the progressive transfer of glucosyl residues to diacylglycerol; involved in the formation of membrane glycolipids YP_001421600.1 cold shock protein; involved in elicitation plant basal defence YP_001421601.1 regulatory protein DegR YP_001421602.1 hypothetical protein YpzA YP_001421603.1 hypothetical protein YpeQ YP_001421604.1 conserved hypothetical protein YpeP YP_001421605.1 conserved hypothetical protein YpdP YP_001421606.1 ribonuclease H YpdQ YP_001421607.1 small acid-soluble spore protein SspL YP_001421608.1 5'-3' exonuclease YpcP YP_001421610.1 hypothetical protein YpbS YP_001421611.1 hypothetical protein YpbR YP_001421612.1 conserved hypothetical protein YpbQ YP_001421613.1 naringenin-chalcone synthase BcsA YP_001421616.1 membrane protein YdfR YP_001421617.1 conserved hypothetical protein YrdC YP_001421618.1 xanthine permease PbuX YP_001421619.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_001421620.1 metallocarboxypeptidase YpwA YP_001421621.1 probable ATP-dependent helicase YpvA YP_001421622.1 hypothetical protein YptA YP_001421624.1 hypothetical protein YqgA YP_001421625.1 conserved hypothetical protein YpsC YP_001421626.1 GpsB; guiding PBP1 shuttling; similar to DivIVA YP_001421627.1 conserved hypothetical protein YpsA YP_001421628.1 spore coat protein (inner) CotD YP_001421629.1 conserved hypothetical protein YprB YP_001421630.1 ATP-dependent RNA helicase YprA YP_001421631.1 PTS system IIA component YpqE YP_001421632.1 conserved hypothetical protein YpqA YP_001421633.1 hypothetical protein YppG YP_001421634.1 hypothetical protein YppF YP_001421635.1 hypothetical protein YppE YP_001421636.1 hypothetical protein YppD YP_001421637.1 small, acid-soluble spore protein SspM YP_001421638.1 hypothetical protein YppC YP_001421639.1 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC YP_001421640.1 penicillin-binding proteins IA/IB PonA YP_001421641.1 hypothetical protein YpoC YP_001421642.1 probable endonuclease III (DNA-(apurinic or apyrimidinic site) lyase) Nth YP_001421643.1 DNA replication protein DnaD YP_001421644.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001421645.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_001421646.1 hypothetical protein YpmB YP_001421647.1 hypothetical protein YpmA YP_001421648.1 unwinds DNA YP_001421649.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_001421650.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_001421651.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_001421652.1 bifunctional protein birA; includes: Biotin operon repressor; Biotin- [acetyl-CoA-carboxylase] synthetase BirA YP_001421653.1 catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity YP_001421654.1 glycosyl transferase YpjH YP_001421655.1 conserved hypothetical protein YpjG YP_001421656.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_001421657.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_001421658.1 conserved hypothetical protein YpjD YP_001421659.1 conserved hypothetical protein YpjC YP_001421660.1 oxalate decarboxylase OxdC1 YP_001421661.1 hypothetical protein YpjB YP_001421662.1 conserved hypothetical protein YpjA YP_001421663.1 menaquinol-cytochrome c oxidoreductase (cytochrome b/c subunit) QcrC YP_001421664.1 electron transport protein YP_001421665.1 menaquinol-cytochrome c reductase iron-sulfur subunit (Rieske iron-sulfur protein) QcrA YP_001421666.1 hypothetical protein YpiF YP_001421667.1 hypothetical protein YpiB YP_001421668.1 conserved hypothetical protein YpiA YP_001421669.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_001421670.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate YP_001421671.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_001421672.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_001421673.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_001421674.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_001421675.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_001421676.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_001421677.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_001421678.1 chorismate mutase (isozymes 1 and 2) AroH YP_001421679.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_001421680.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_001421681.1 methyl-accepting chemotaxis proteins (MCPs) methyltransferase CheR YP_001421682.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_001421683.1 heptaprenyl diphosphate synthase component II HepT YP_001421684.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_001421685.1 heptaprenyl diphosphate synthase component I HepS YP_001421686.1 tryptophan RNA-binding attenuator protein; binds leader Trp transcript causing transcription termination YP_001421687.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_001421688.1 DNA-binding protein II HupA YP_001421689.1 stage IV sporulation protein A (SpoIVA) YP_001421690.1 hypothetical protein YphF YP_001421691.1 hypothetical protein YphE YP_001421692.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_001421693.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_001421694.1 conserved hypothetical protein YphA YP_001421695.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_001421696.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_001421697.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_001421698.1 hypothetical protein YpfB YP_001421699.1 sporulation protein YpeB YP_001421700.1 spore cortex-lytic enzyme SleB YP_001421701.1 conserved hypothetical protein YpdC YP_001421702.1 hypothetical protein YpdA YP_001421703.1 NAD-specific glutamate dehydrogenase GudB YP_001421704.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence YP_001421705.1 conserved hypothetical protein YpbG YP_001421706.1 hypothetical protein YpbF YP_001421707.1 conserved hypothetical protein YpbE YP_001421708.1 conserved hypothetical protein YpbD YP_001421709.1 ATP-dependent DNA helicase RecQ YP_001421710.1 conserved hypothetical protein YpbB YP_001421711.1 ferredoxxin Fer YP_001421712.1 conserved hypothetical protein YpaA YP_001421713.1 hypothetical protein YpzE YP_001421714.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate YP_001421715.1 sigma-X negative effector RsiX YP_001421716.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in B. subtilis has been shown to regulate cell envelope modification and may effect antibiotic resistance YP_001421717.1 two component sensor histidine kinase; COG5002; global regulation of aerobic and anaerobic respiration; transcription control of biofilm formation YP_001421718.1 two-component response regulator; COG0745, OmpR like; RR consisting of a CheY like receiver domain and a winged helix DNA-binding domain; global regulation of aerobic and anaerobic re3spiration YP_001421719.1 cytochrome c-type synthesis protein ResC YP_001421720.1 protein required for cytochrome c synthesis ResB YP_001421721.1 catalyzes the reduction of the disulfide bonds in the heme binding site of apocytochrome c YP_001421722.1 ribosomal large subunit pseudouridine synthase B (RluB) YP_001421723.1 spore maturation protein SpmB YP_001421724.1 spore maturation protein SpmA YP_001421725.1 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) DacB YP_001421726.1 hypothetical protein YpuI YP_001421727.1 segregation and condensation protein B (ScpB) YP_001421728.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB YP_001421729.1 conserved hypothetical protein YpuF YP_001421730.1 protein involved in riboflavin biosynthesis RibTD YP_001421731.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_001421732.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate YP_001421733.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_001421734.1 riboflavin-specific deaminase RibD YP_001421735.1 hypothetical protein YpuD YP_001421736.1 type I signal peptidase SipS YP_001421738.1 peptidyl-prolyl cis-trans isomerase B (PpiB) YP_001421739.1 conserved hypothetical protein YpuA YP_001421740.1 diaminopimelate decarboxylase LysA YP_001421741.1 stage V sporulation protein AF (SpoVAF) YP_001421742.1 stage V sporulation protein AE1 (SpoVAE1) YP_001421743.1 stage V sporulation protein AE2 (SpoVAE2) YP_001421744.1 stage V sporulation protein AD (SpoVAD) YP_001421745.1 stage V sporulation protein AC (SpoVAC) YP_001421746.1 stage V sporulation protein AB (SpoVAB) YP_001421747.1 stage V sporulation protein AA (SpoVAA) YP_001421748.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore. YP_001421749.1 binds to sigma F preventing its association with RNA polymerase during sporulation YP_001421750.1 anti-sigma F factor antagonist SpoIIAA YP_001421751.1 penicilin binding protein ( D-alanyl-D-alanine carboxypeptidase) DacF YP_001421752.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_001421753.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_001421754.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_001421756.1 ferric uptake regulation protein Fur YP_001421757.1 stage II sporulation protein M (SpoIIM) YP_001421758.1 hypothetical protein YqkK YP_001421760.1 malolactic enzyme MleA YP_001421761.1 malate-H+/Na+-lactate antiporter MleN YP_001421762.1 catalyzes the formation of fumarate from aspartate YP_001421763.1 L-asparaginase AnsA YP_001421764.1 HTH-type transcriptional regulator AnsR (Ans operon repressor) YP_001421765.1 conserved hypothetical protein YqxK YP_001421766.1 ADP-ribose pyrophosphatase NudF YP_001421767.1 conserved hypothetical protein YqkF YP_001421768.1 hypothetical protein YqkE YP_001421769.1 hypothetical protein YqkD YP_001421770.1 hypothetical protein YqkC YP_001421771.1 conserved hypothetical protein YqkB YP_001421772.1 conserved hypothetical protein YqkA YP_001421773.1 hypothetical protein YqjZ YP_001421774.1 conserved hypothetical protein YqjY YP_001421775.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_001421776.1 hypothetical protein YqjX YP_001421777.1 hypothetical protein YqzH YP_001421780.1 conserved hypothetical protein YqjT YP_001421781.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis YP_001421782.1 catalyzes the formation of pyruvate from serine YP_001421783.1 oxidoreductase YqjQ YP_001421784.1 conserved hypothetical protein YqjP YP_001421785.1 pyrroline-5-carboxylate reductase II ProI YP_001421786.1 difficidin synthesis; involved in polyketide production YP_001421787.1 difficidin synthesis; hydroxymethylglutaryl-coenzyme A synthase YP_001421788.1 difficidin synthesis; cytochrome P450 'oxidase' YP_001421789.1 difficidin synthesis; modular polyketide synthase of type I YP_001421790.1 difficidin synthesis; modular polyketide synthase of type I YP_001421791.1 difficidin synthesis; modular polyketide synthase of type I YP_001421792.1 difficidin synthesis; modular polyketide synthase of type I YP_001421793.1 difficidin synthesis; modular polyketide synthase of type I YP_001421794.1 difficidin synthesis; modular polyketide synthase of type I YP_001421795.1 difficidin synthesis; modular polyketide synthase of type I YP_001421796.1 difficidin synthesis; beta-ketoacyl-acyl carrier protein reductase YP_001421797.1 difficidin synthesis; acyl-CoA synthetase YP_001421798.1 hypothetical protein probably involved in difficidin synthesis YP_001421799.1 difficidin synthesis YP_001421800.1 difficidin synthesis; acyltransferase/oxidoreductase YP_001421804.1 catalyzes the reduction of alpha, beta-unsaturated aldehydes and ketones; reduces the nitro group nitroester and nitroaromatic compounds YP_001421805.1 hypothetical protein YqjL YP_001421806.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_001421807.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_001421808.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_001421809.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_001421810.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_001421811.1 hypothetical protein YqzJ YP_001421812.1 involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site YP_001421813.1 conserved hypothetical protein YqjE YP_001421814.1 propionyl-CoA carboxylase beta chain (PCCase) YqjD YP_001421815.1 conserved hypothetical protein YqjC YP_001421816.1 conserved hypothetical protein YqjB YP_001421817.1 conserved hypothetical protein YqjA YP_001421818.1 amino acid ABC transporter (ATP-binding protein) YqiZ YP_001421819.1 amino acid ABC transporter (permease) YqiY YP_001421820.1 amino acid ABC transporter (binding protein) YqiX YP_001421821.1 conserved hypothetical protein YqiW YP_001421822.1 multidrug resistance protein BmrU YP_001421823.1 branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase) BkdB YP_001421824.1 branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta) BkdAB YP_001421825.1 branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha) bBkdAA YP_001421826.1 E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_001421827.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_001421828.1 leucine dehydrogenase Bcd YP_001421829.1 catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate YP_001421830.1 sigma-L-dependent transcriptional regulator BkdR YP_001421831.1 hypothetical protein YqzF YP_001421832.1 carboxyvinyl-carboxyphosphonate phosphorylmutase YqiQ YP_001421833.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C YP_001421834.1 forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle, glyoxylate cycle and respiration YP_001421835.1 acyl-CoA dehydrogenase MmgC YP_001421836.1 3-hydroxybutyryl-CoA dehydrogenase MmgB YP_001421837.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001421838.1 glycerophosphodiester phosphodiesterase YqiK YP_001421839.1 N-acetylmuramoyl-L-alanine amidase YqiI YP_001421840.1 hypothetical protein YqiH YP_001421844.1 NADH-dependent flavin oxidoreductase YqiG YP_001421846.1 alanine racemase YncD YP_001421847.1 master regulator of initiation of sporulation; cd00156; involved in initiation of biofilm formation YP_001421848.1 stage IV sporulation protein SpoIVB YP_001421849.1 DNA repair protein RecN YP_001421850.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_001421851.1 conserved hypothetical protein YqxC YP_001421852.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_001421853.1 geranyltranstransferase YqiD YP_001421854.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_001421855.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_001421856.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_001421857.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_001421858.1 conserved hypothetical protein YqhY YP_001421859.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_001421860.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_001421861.1 stage III sporulation protein AH (SpoIIIAH) YP_001421862.1 stage III sporulation protein AG (SpoIIIAG) YP_001421863.1 stage III sporulation protein AF (SpoIIIAF) YP_001421864.1 stage III sporulation protein AE (SpoIIIAE) YP_001421865.1 stage III sporulation protein AD (SpoIIIAD) YP_001421866.1 stage III sporulation protein AC (SpoIIIAC) YP_001421867.1 necessary for complete engulfment of forespore YP_001421868.1 stage III sporulation protein SpoIIIAA YP_001421869.1 hypothetical protein YqhV YP_001421870.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_001421871.1 dipeptidase YqhT YP_001421872.1 hypothetical protein YqhR YP_001421873.1 conserved hypothetical protein YqhQ YP_001421874.1 hypothetical protein YqhP YP_001421875.1 conserved hypothetical protein YqhO YP_001421876.1 involved in manganese homeostasis; activates the transcription of the mntABCD operon YP_001421877.1 conserved hypothetical protein YqhM YP_001421878.1 conserved hypothetical protein YqhL YP_001421879.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_001421880.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_001421881.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_001421882.1 SNF2 helicase YqhH YP_001421883.1 hypothetical protein YqhG YP_001421884.1 antagonist of SinR; transcription control of biofilm formation YP_001421885.1 HTH-type transcriptional regulator; master regulator of biofilm formation YP_001421886.1 spore coat associated protein N; major protein component of extracellular matrix, required for development of complex colony architecture YP_001421887.1 type I signal peptidase; involved in processing of TasA YP_001421888.1 member of the yqxM-sipW-tasA operon, essential for biofilm formation and controled by sinR YP_001421889.1 hypothetical protein YqzG YP_001421890.1 hypothetical protein YqzE YP_001421891.1 DNA transport machinery protein ComGG YP_001421892.1 probably part of the DNA transport machinery ComGF YP_001421893.1 DNA transport machinery protein ComGE YP_001421894.1 DNA transport machinery protein ComGD YP_001421895.1 exogenous DNA-binding (competence) ComGC YP_001421896.1 DNA transport machinery protein ComGB YP_001421897.1 protein required for exogenous DNA-binding (competence) ComGA YP_001421898.1 conserved hypothetical protein YqxL YP_001421899.1 conserved hypothetical protein YqhB YP_001421900.1 conserved hypothetical protein YqhA YP_001421901.1 conserved hypothetical protein YqgZ YP_001421902.1 hypothetical protein YqgY YP_001421903.1 conserved hypothetical protein YqgX YP_001421904.1 hypothetical protein YqgW YP_001421905.1 conserved hypothetical protein YqgV YP_001421906.1 hypothetical protein YqgU YP_001421907.1 conserved hypothetical protein YqgT YP_001421908.1 glucose kinase GlcK YP_001421909.1 conserved hypothetical protein YqgQ YP_001421910.1 Na+/H+ antiporter NhaC YP_001421911.1 hypothetical protein YqgO YP_001421912.1 conserved hypothetical protein YqgN YP_001421913.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_001421914.1 hypothetical protein YqzD YP_001421915.1 hypothetical protein YqzC YP_001421916.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_001421917.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_001421918.1 phosphate ABC transporter (permease) PstA YP_001421919.1 phosphate ABC transporter (permease) YqgH YP_001421920.1 phosphate ABC transporter (binding protein) PstS YP_001421923.1 penicillin-binding protein IIA (PbpA) YP_001421924.1 hypothetical protein YqgE YP_001421925.1 superoxide dismutase [Mn] SodA; downregulation by plant root exudate YP_001421926.1 conserved hypothetical protein YqgC YP_001421927.1 conserved hypothetical protein YqgB YP_001421928.1 conserved hypothetical protein YqfZ YP_001421929.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_001421930.1 hypothetical protein YqfX YP_001421931.1 conserved hypothetical protein YqfW YP_001421932.1 zinc-specific metallo-regulatory protein Zur YP_001421933.1 conserved hypothetical protein YqfU YP_001421934.1 hypothetical protein YqfT YP_001421935.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues YP_001421936.1 ATP-dependent RNA helicase YqfR YP_001421937.1 hypothetical protein YqfQ YP_001421938.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_001421939.1 conserved hypothetical protein YqfO YP_001421940.1 conserved hypothetical protein YqfN YP_001421941.1 cytochrome c550 CccA YP_001421942.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium YP_001421943.1 synthesizes RNA primers at the replication forks YP_001421944.1 conserved hypothetical protein YqxD YP_001421945.1 conserved hypothetical protein YqfL YP_001421946.1 conserved hypothetical protein YqzB YP_001421947.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_001421948.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA YP_001421949.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_001421950.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_001421951.1 cytidine deaminase Cdd YP_001421952.1 diacylglycerol kinase DgkA YP_001421953.1 conserved hypothetical protein YqfG YP_001421954.1 conserved hypothetical protein YqfF YP_001421955.1 phosphate starvation-induced protein PhoH YP_001421956.1 conserved hypothetical protein YqfD YP_001421957.1 conserved hypothetical protein YqfC YP_001421958.1 hypothetical protein YqfB YP_001421959.1 conserved hypothetical protein YqfA YP_001421960.1 conserved hypothetical protein YqeZ YP_001421961.1 conserved hypothetical protein YqeY YP_001421962.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_001421963.1 conserved hypothetical protein YqeW YP_001421964.1 conserved hypothetical protein YqeV YP_001421965.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_001421966.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_001421967.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_001421968.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_001421969.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_001421970.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_001421971.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_001421972.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_001421973.1 hypothetical protein YqxA YP_001421974.1 stage II sporulation P (SpoIIP) YP_001421975.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination YP_001421976.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_001421977.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_001421978.1 integral membrane protein ComEC YP_001421979.1 protein required for DNA binding and uptake (competence) ComEB YP_001421980.1 unspecific high-affinity DNA-binding protein ComEA YP_001421981.1 may be involved in regulation of competence genes YP_001421982.1 hypothetical protein YqeM YP_001421983.1 conserved hypothetical protein YqeL YP_001421984.1 HD phosphatase; predicted role in NAD metabolism YP_001421985.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_001421986.1 conserved hypothetical protein YqeI YP_001421987.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_001421988.1 in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis YP_001421989.1 conserved hypothetical protein YqeG YP_001421990.1 sporulation inhibitor Sda YP_001421991.1 conserved hypothetical protein Yqe YP_001421993.1 conserved hypothetical protein YqeD YP_001421995.1 sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment YP_001421998.1 conserved hypothetical protein YrkR YP_001421999.1 two-component sensor histidine kinase; cd00082, HisKA, Histidine kinase A (dimerization/phosphoacceptor) domain YP_001422000.1 two-component response regulator; COG0745, OmpR, RR consisting of a CheY-like receiver domain and a winged helix dNA-binding domain YP_001422001.1 conserved hypothetical protein YrkO YP_001422002.1 conserved hypothetical protein YrkN YP_001422003.1 conserved hypothetical protein YqaC YP_001422004.1 hypothetical protein YyaR YP_001422005.1 conserved hypothetical protein YrdA YP_001422010.1 mannose-6-phosphate isomerase ManA YP_001422011.1 phosphotransferase system (PTS) mannose-specificenzyme IIBCA component ManP YP_001422012.1 mannose operon transcriptional antiterminator ManR YP_001422014.1 transcription regulator YjdI YP_001422016.1 hypothetical transport protein yYybF1 YP_001422017.1 cytochrome P450/NADPH-cytochrome P450reductase YrhJ YP_001422018.1 conserved hypothetical protein YrhI YP_001422019.1 hypothetical protein YrhH YP_001422020.1 conserved hypothetical protein YrzI YP_001422021.1 formate transporter YrhG YP_001422022.1 conserved hypothetical protein YrhF YP_001422023.1 formate dehydrogenase YrhE YP_001422024.1 conserved hypothetical protein YrhD YP_001422025.1 hypothetical protein YrhC YP_001422026.1 catalyzes the formation of L-homocysteine from cystathionine YP_001422027.1 cysteine synthase YrhA YP_001422028.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_001422029.1 hypothetical protein YrrT YP_001422030.1 hypothetical protein YrzA YP_001422031.1 hypothetical protein YrrS YP_001422032.1 penicillin-binding protein YrrR YP_001422033.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_001422034.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_001422035.1 protease YrrO YP_001422036.1 protease YrrN YP_001422037.1 caffeoyl-CoA O-methyltransferase YrrM YP_001422038.1 conserved hypothetical protein YrrL YP_001422039.1 conserved hypothetical protein YrzB YP_001422040.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_001422041.1 conserved hypothetical protein YrzL YP_001422042.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_001422043.1 conserved hypothetical protein YrrI YP_001422044.1 glutamine ABC transporter (ATP-binding protein) GlnQ YP_001422045.1 glutamine ABC transporter (glutamine-binding protein) GlnH YP_001422046.1 glutamine ABC transporter (integral membrane protein) GlnM YP_001422047.1 glutamine ABC transporter (integral membrane protein) GlnP YP_001422049.1 conserved hypothetical protein YrrD YP_001422050.1 conserved hypothetical protein YrrC YP_001422051.1 conserved hypothetical protein YrrB YP_001422052.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_001422053.1 conserved hypothetical protein YrvO YP_001422054.1 conserved hypothetical protein YrzC YP_001422055.1 conserved hypothetical protein YrvN YP_001422056.1 conserved hypothetical protein YrvM YP_001422057.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_001422058.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_001422059.1 hypothetical protein YrzK YP_001422060.1 N-acetylmuramoyl-L-alanine amidase YrvJ YP_001422061.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_001422062.1 GTP pyrophosphokinase RelA YP_001422063.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_001422064.1 single-strand DNA-specific exonuclease YrvE YP_001422065.1 conserved hypothetical protein YrvD YP_001422066.1 conserved hypothetical protein YrvC YP_001422067.1 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_001422068.1 hypothetical protein YrzD YP_001422069.1 stage V sporulation protein B (SpoVB) YP_001422070.1 conserved hypothetical protein YrbG YP_001422071.1 hypothetical protein YrzE YP_001422072.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_001422073.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_001422074.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_001422075.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_001422076.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_001422077.1 bypass-of-forespore protein C (BofC) YP_001422079.1 spore cortex protein CoxA YP_001422080.1 spoVID associated morphogenetic protein SafA YP_001422081.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_001422082.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_001422083.1 catalyzes the formation of oxaloacetate from L-aspartate YP_001422084.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis YP_001422085.1 conserved hypothetical protein YrxA YP_001422086.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis YP_001422087.1 chorismate mutase PheB YP_001422088.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_001422089.1 sporulation initiation phosphotransferase B (Spo0B) YP_001422090.1 involved in the peptidyltransferase reaction during translation YP_001422091.1 conserved hypothetical protein YsxB YP_001422092.1 50S ribosomal protein L21 (BL20) RplU YP_001422093.1 stage IV sporulation protein FB (SpoIVFB) YP_001422094.1 stage IV sporulation protein FA (SpoIVFA) YP_001422095.1 septum site-determining protein MinD YP_001422096.1 blocks the formation of polar Z-ring septums YP_001422097.1 rod shape-determining protein MreD YP_001422098.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_001422099.1 functions in MreBCD complex in some organisms YP_001422100.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_001422101.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_001422102.1 endospore development protein SpoIIB YP_001422103.1 type 4 prepilin-like proteins leader peptide-processing enzyme ComC YP_001422104.1 folyl-polyglutamate synthetase FolC YP_001422105.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_001422107.1 hypothetical protein YsxE YP_001422108.1 spore coat assembly protein (SpoVID) YP_001422109.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_001422110.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_001422111.1 uroporphyrinogen III cosynthase HemD YP_001422112.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_001422113.1 membrane-bound protein HemX YP_001422114.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_001422115.1 hypothetical protein YsxD YP_001422116.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_001422117.1 ATP-dependent protease La 1 LonA YP_001422118.1 lon-like ATP-dependent protease LonB YP_001422119.1 binds and unfolds substrates as part of the ClpXP protease YP_001422120.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_001422121.1 conserved hypothetical protein YsoA YP_001422122.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_001422123.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_001422124.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_001422125.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_001422126.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_001422127.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_001422128.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_001422131.1 conserved hypothetical protein YsnB YP_001422132.1 hydrolyzes non-standard nucleotides such as xanthine and inosine YP_001422133.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_001422134.1 germination protein GerM YP_001422135.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_001422136.1 conserved hypothetical protein YsmB YP_001422137.1 germination protein GerE YP_001422138.1 conserved hypothetical protein YsmA YP_001422139.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_001422140.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_001422141.1 succinate dehydrogenase (cytochrome b-558 subunit) SdhC YP_001422142.1 hypothetical protein YslB YP_001422143.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_001422144.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_001422145.1 thioredoxin TrxA YP_001422146.1 alpha-N-arabinofuranosidase II Xsa YP_001422147.1 electron transfer flavoprotein (alpha subunit) involved in calcium carbonate precipitation YP_001422148.1 electron transfer flavoprotein (beta subunit) YP_001422149.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_001422150.1 transcriptional regulator (TetR/AcrR family) YsiA YP_001422151.1 long chain acyl-CoA synthetase LcfA YP_001422152.1 hypothetical protein YwbB YP_001422153.1 conserved hypothetical protein YshE YP_001422154.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange YP_001422155.1 DNA-dependent DNA polymerase beta chain YshC YP_001422156.1 hypothetical protein YshB YP_001422157.1 conserved hypothetical protein YshA YP_001422158.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_001422159.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_001422160.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_001422161.1 conserved hypothetical protein YsgA YP_001422163.1 conserved hypothetical protein YsfB YP_001422164.1 glycolate oxidase subunit YsfC YP_001422165.1 glycolate oxidase subunit YsfD YP_001422166.1 carbon starvation protein CstA YP_001422167.1 alpha-L-arabinofuranosidase I AbfA YP_001422168.1 L-arabinose transport system permease protein AraQ YP_001422169.1 L-arabinose transport system permease protein AraP YP_001422170.1 probable arabinose-binding protein precursor AraN YP_001422171.1 arabinose operon protein M (AraM) YP_001422172.1 arabinose operon protein L (AraL) YP_001422173.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source YP_001422174.1 catalyzes the phosphorylation of ribulose to ribulose 5-phosphate YP_001422175.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism YP_001422176.1 arabinan-endo 1,5-alpha-L-arabinase AbnA YP_001422177.1 COG1363; endo-1,4-beta-glucanase YP_001422178.1 hypothetical protein YsdB YP_001422179.1 conserved hypothetical protein YsdA YP_001422180.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_001422181.1 50S ribosomal protein L35 RpmI YP_001422182.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_001422183.1 in conjunction with LrgA this protein inhibits the expression or activity of extracellular murein hydrolases YP_001422184.1 negatively regulates murein hydrolase activity YP_001422185.1 two-component response regulator; COG3279, RR of the LytR/AlgR family, two component signal transduction system controlling rate of autolysis YP_001422186.1 sensor histidine kinase controlling autolysis; transcription control of biofilm formation YP_001422187.1 conserved hypothetical protein YsaA YP_001422188.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_001422189.1 hypothetical protein YtxC YP_001422190.1 conserved hypothetical protein YtxB YP_001422191.1 Primosomal protein that may act to load helicase DnaC during DNA replication YP_001422192.1 replication initiation and membrane attachment protein DnaB YP_001422193.1 conserved hypothetical protein YtcG YP_001422194.1 Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine YP_001422195.1 NADP-dependent; catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; active during gluconeogenesis YP_001422196.1 conserved hypothetical protein YtcD YP_001422197.1 arabinose efflux permease YtbD YP_001422198.1 plant metabolite dehydrogenase YtbE YP_001422199.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_001422200.1 conserved hypothetical protein YtaF YP_001422201.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_001422202.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_001422203.1 sensor protein histidine kinase; COG5002, VicK; HK involved in global regulation of the pho regulon YP_001422204.1 two-component response regulator; COG0745, OmpR like RR consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; global regulation of the pho regulon YP_001422205.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_001422206.1 Converts isocitrate to alpha ketoglutarate YP_001422207.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate YP_001422208.1 hypothetical protein YjdF YP_001422209.1 conserved hypothetical protein YtwI YP_001422210.1 conserved hypothetical protein YtvI YP_001422211.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein YP_001422212.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_001422213.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_001422214.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_001422215.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_001422216.1 NAD-dependent malic enzyme IV YtsJ YP_001422217.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria. YP_001422219.1 hypothetical protein YtrI YP_001422220.1 conserved hypothetical protein YtqI YP_001422221.1 hypothetical protein YtpI YP_001422222.1 conserved hypothetical protein YtoI YP_001422223.1 catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins YP_001422224.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_001422225.1 hypothetical protein YtzD YP_001422226.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_001422227.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_001422228.1 molybdopterin precursor biosynthesis protein B (MoaB) YP_001422229.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_001422230.1 conserved hypothetical protein YtxK YP_001422231.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein YP_001422232.1 conserved hypothetical protein YtfJ YP_001422233.1 hypothetical protein YtfI YP_001422234.1 conserved hypothetical protein YteJ YP_001422235.1 signal peptide peptidase SppA YP_001422236.1 catalyzes the phosphorylation of NAD to NADP YP_001422237.1 conserved hypothetical protein YtcJ YP_001422238.1 conserved hypothetical protein YtcI YP_001422239.1 small acid-soluble spore protein SspA YP_001422240.1 Required for the synthesis of the thiazole moiety YP_001422241.1 nifS protein homolog NifZ YP_001422242.1 branched-chain amino acid transport system carrier protein BraB YP_001422243.1 acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation YP_001422244.1 catalyzes the formation of L-histidinol from L-histidinol phosphate YP_001422245.1 HTH-type transcription regulator (Stress response protein) YttP YP_001422246.1 conserved hypothetical protein YtsP YP_001422247.1 conserved hypothetical protein YtrP YP_001422248.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_001422249.1 aldehyde dehydrogenase YwdH YP_001422250.1 hypothetical protein [bacteriophage SPBc2] YokH YP_001422251.1 N-terminus YP_001422255.1 Positive regulatory protein that acts at the late promoter PL YP_001422259.1 C-terminus YP_001422260.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine YP_001422261.1 conserved hypothetical protein YraA YP_001422262.1 C-terminus YP_001422268.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_001422269.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_001422270.1 acetoin utilization protein AcuA YP_001422271.1 acetoin dehydrogenase AcuB YP_001422272.1 acetoin dehydrogenase AcuC YP_001422273.1 Homolog of MotB, appears to be involved in motility on surfaces or under specific ionic conditions. With MotP (a Mot A homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. YP_001422274.1 Homolog of MotA, appears to be involved in motility on surfaces and under different ionic conditions. With MotS (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. YP_001422275.1 catabolite control protein A (glucose-resistanceamylase regulator) CcpA YP_001422276.1 catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate YP_001422277.1 conserved hypothetical protein YtxJ YP_001422278.1 general stress protein YtxH YP_001422279.1 general stress protein YtxG YP_001422280.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_001422281.1 DNA translocase stage III sporulation protein YtpT YP_001422282.1 phenylalanyl-tRNA synthetase (beta subunit) YtpR YP_001422283.1 conserved hypothetical protein YtpQ YP_001422284.1 thioredoxin YtpP YP_001422285.1 conserved hypothetical protein YtoQ YP_001422286.1 conserved hypothetical protein YtoP YP_001422287.1 hypothetical protein YtzB YP_001422288.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_001422289.1 hypothetical protein YtnP YP_001422290.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_001422291.1 hypothetical protein YtzH YP_001422292.1 conserved hypothetical protein YtmP YP_001422293.1 conserved hypothetical protein YtlR YP_001422294.1 conserved hypothetical protein YtlQ YP_001422295.1 conserved hypothetical protein YtlP YP_001422296.1 cysteine synthase YtkP YP_001422297.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases YP_001422298.1 conserved hypothetical protein YtiP YP_001422299.1 hypothetical protein YthQ YP_001422300.1 ABC transporter (ATP-binding protein) YthP YP_001422301.1 hypothetical protein YtzE YP_001422302.1 pseudouridine synthase YtzF YP_001422303.1 spore cortex protein YtgP YP_001422304.1 conserved hypothetical protein YtfP YP_001422305.1 glycine betaine transporter OpuD YP_001422306.1 hypothetical protein yteV (csYteV YP_001422307.1 transcriptional regulator (LacI family) MsmR YP_001422308.1 multiple sugar-binding protein MsmE YP_001422309.1 sugar transport protein AmyD YP_001422310.1 maltose transport protein AmyC YP_001422311.1 alpha-D-galactoside galactohydrolase MelA YP_001422313.1 conserved hypothetical protein YtwF YP_001422314.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_001422315.1 hypothetical protein YtvB YP_001422316.1 conserved hypothetical protein YtvA YP_001422317.1 conserved hypothetical protein YttB YP_001422318.1 conserved hypothetical protein YwaF YP_001422319.1 bacitracin export permease protein BceB YP_001422320.1 bacitracin export ATP-binding protein BceA YP_001422321.1 sensor IM histidine kinase; smart00387; member of the two component regulatory system BceS/BceR involved in the regulation of bacitracin resistance YP_001422322.1 sensory transduction protein BceR YP_001422323.1 hypothetical protein YtrF YP_001422324.1 hypothetical ABC transporter ATP-binding protein YtrE YP_001422325.1 hypothetical protein YtrD YP_001422326.1 hypothetical protein yYtrC1 YP_001422327.1 hypothetical protein YtrC YP_001422328.1 ABC transporter (ATP-binding protein) YtrB YP_001422329.1 transcription regulator YtrA YP_001422330.1 hypothetical protein YtzC YP_001422331.1 synthesis of unknown secondary metabolite; COG0318; Acyl-CoA synthetases YP_001422332.1 synthesis of unknown secondary metabolite YP_001422333.1 synthesis of unkown secondary metabolite; cd00833; predicted polyketide synthase and hydrolase [COG0491] YP_001422334.1 synthesis of unknown secondary metabolite; COG1020; non-ribosomal peptide synthetase YP_001422335.1 synthesis of unknown secondary metabolite; cd02142, mcbC-like_oxidoreductase YP_001422336.1 synthesis of unknown secondary metabolite; thioesterase involved in non-ribosomal peptide synthesis YP_001422338.1 conserved hypothetical protein YtqA YP_001422339.1 conserved hypothetical protein YtqB YP_001422341.1 hypothetical protein YtpB YP_001422342.1 lysophospholipase YtpA YP_001422343.1 conserved hypothetical protein YtoA YP_001422344.1 amino acid permease YtnA YP_001422345.1 asparagine synthetase AsnB YP_001422346.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_001422347.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_001422348.1 hypothetical protein YtmB YP_001422349.1 conserved hypothetical protein YtmA YP_001422350.1 ABC-transport system substrate-binding protein YtlA YP_001422351.1 ABC-transport system (ATP-binding protein) YtlC YP_001422352.1 ABC transporter (permease) YtlD YP_001422353.1 hypothetical protein YtkD YP_001422354.1 autolytic amidase YtkC YP_001422355.1 DNA-protecting protein Dps YP_001422356.1 hypothetical protein YtkA YP_001422357.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_001422358.1 conserved hypothetical protein YtjA YP_001422359.1 carbonic anhydrase YtiB YP_001422360.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_001422361.1 cytochrome d oxidase subunit YthA YP_001422362.1 conserved hypothetical protein YthB YP_001422365.1 O-succinylbenzoate-CoA synthase MenC YP_001422366.1 converts O-succinylbenzoate to O-succinylbenzoyl-CoA YP_001422367.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA YP_001422368.1 prolyl aminopeptidase YtxM YP_001422369.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis YP_001422370.1 menaquinone-specific isochorismate synthase MenF YP_001422371.1 conserved hypothetical protein YteA YP_001422372.1 conserved hypothetical protein YtaB YP_001422373.1 conserved hypothetical protein YuaJ YP_001422374.1 conserved hypothetical protein YuaG YP_001422375.1 hypothetical protein YuaF YP_001422376.1 hypothetical protein YuaE YP_001422377.1 conserved hypothetical protein YuaD YP_001422378.1 alcohol dehydrogenase GbsB YP_001422379.1 glycine betaine aldehyde dehydrogenase GbsA YP_001422380.1 conserved hypothetical protein YuaC YP_001422381.1 hypothetical protein YuaB YP_001422382.1 conserved hypothetical protein YuaA YP_001422383.1 N-acetylmuramoyl-L-alanine amidase YubE YP_001422384.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine YP_001422386.1 hypothetical protein YjcN YP_001422387.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_001422388.1 conserved hypothetical protein YubA YP_001422389.1 conserved hypothetical protein YulF YP_001422391.1 methyl-accepting chemotaxis protein TlpB YP_001422392.1 methyl-accepting chemotaxis protein McpA YP_001422393.1 methyl-accepting chemotaxis protein TlpA YP_001422394.1 methyl-accepting chemotaxis protein McpB YP_001422395.1 involved in assembly of spore coat proteins such as GerQ by catalyzing epsilon-(gamma-glutamyl)lysine cross links YP_001422397.1 2-nitropropane dioxygenase YrpB YP_001422398.1 conserved hypothetical protein YugU YP_001422399.1 glycosyl hydrolase family protein YugT YP_001422400.1 conserved hypothetical protein YugS YP_001422401.1 conserved hypothetical protein YugP YP_001422402.1 conserved hypothetical protein YugO YP_001422403.1 hypothetical protein YugN YP_001422404.1 hypothetical protein YugM YP_001422405.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_001422408.1 NADH-dependent butanol dehydrogenase YugK YP_001422409.1 NADH-dependent butanol dehydrogenase YugJ YP_001422410.1 conserved hypothetical protein YuzA YP_001422411.1 induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation YP_001422412.1 alanine transaminase AlaT YP_001422413.1 transcriptional regulator (Lrp/AsnC family) AlaR YP_001422414.1 conserved hypothetical protein YugF YP_001422415.1 hypothetical protein YugE YP_001422416.1 aminotransferase PatB YP_001422417.1 sporulation-specific ATP-dependent protein kinase KinB YP_001422418.1 kinase-associated lipoprotein B precursor KapB YP_001422419.1 inhibitor of the KinA pathway of sporulation YP_001422420.1 conserved hypothetical protein YuxJ YP_001422421.1 penicillin-binding protein IV PbpD YP_001422422.1 conserved hypothetical protein YuxK YP_001422423.1 hypothetical protein YufK YP_001422424.1 sensor histidine kinase; C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration YP_001422425.1 two-component response regulator; COG4565, CitB like RR YP_001422426.1 hypothetical lipoprotein YufN YP_001422427.1 ABC transport system, ATPase component YufO YP_001422428.1 ABC transporter permease YufP YP_001422429.1 ABC transporter permease YufQ YP_001422430.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_001422431.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in the case of S. meliloti it was proved to be involved specifically with K+ transport YP_001422432.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_001422433.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone YP_001422434.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_001422435.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali YP_001422436.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport YP_001422437.1 conserved hypothetical protein YuxO YP_001422438.1 two component response regulator; COG2197, CitB like RR containing a CheY-like receiver domain and a HTH DNA-binding domain; positive regulation of late competence genes and surfactin production YP_001422439.1 sensor histidine kinase; COG4585, competence regulatory protein; polytopic membrane protein activated by comX pheromone, and donates a phosphate to ComA YP_001422440.1 competence pheromone precursor ComX YP_001422441.1 transcriptional regulator of late competence operon (comG) and surfactin expression ComQ YP_001422442.1 degradation enzyme regulation protein DegQ YP_001422443.1 hypothetical protein YuzC YP_001422444.1 conserved hypothetical protein YuxH YP_001422445.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_001422446.1 conserved hypothetical protein YueJ YP_001422447.1 conserved hypothetical protein YueI YP_001422448.1 hypothetical protein YueH YP_001422449.1 hypothetical protein YueG YP_001422450.1 conserved hypothetical protein YueF YP_001422451.1 conserved hypothetical protein YueE YP_001422452.1 conserved hypothetical protein YueD YP_001422453.1 hypothetical protein YueC YP_001422454.1 bacteriophage SPP1 adsorption protein YueB YP_001422455.1 conserved hypothetical protein YukA YP_001422456.1 conserved hypothetical protein YukC YP_001422457.1 conserved hypothetical protein YukD YP_001422458.1 conserved hypothetical protein YukE YP_001422459.1 conserved hypothetical protein YukF YP_001422460.1 alanine dehydrogenase Ald YP_001422461.1 conserved hypothetical protein YukJ YP_001422463.1 siderophore 2,3-dihydroxybenzoate/bacillibactin synthesis; dimodular nonribosomal peptide synthetase YP_001422464.1 siderophore 2,3-dihydroxybenzoate/bacillibactin synthesis; cd01013; isochorismatase YP_001422465.1 siderophore 2,3-dihydroxybenzoate/bacillibactin synthesis; COG1021, EntE, 2,3-dihydroxybenzoate-AMP ligase YP_001422466.1 siderophore 2,3 dihydroxybenzoate/bacillibactin synthesis; synthesizes isochorismate from chorismate as part of the biosynthesis of the siderophore 2,3-dihydroxybenzoate; can also be used in menaquinone synthesis YP_001422467.1 siderophore 2,3 dihydroxybenzoate/bacillibactin synthesis; catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin YP_001422468.1 conserved hypothetical protein YuiI YP_001422469.1 sulfite oxidase YuiH YP_001422470.1 conserved hypothetical protein YuiG YP_001422471.1 conserved hypothetical protein YuiF YP_001422472.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_001422473.1 conserved hypothetical protein YuiD YP_001422474.1 conserved hypothetical protein YuiC YP_001422475.1 hypothetical protein YuiB YP_001422476.1 hypothetical protein YuiA YP_001422477.1 NADH2 dehydrogenase YumB YP_001422478.1 conserved hypothetical protein YumC YP_001422479.1 hypothetical protein YuzG YP_001422480.1 GMP reductase GuaC YP_001422487.1 conserved hypothetical protein YjcK YP_001422488.1 lipoteichoic acid biosynthesis protein DltE YP_001422489.1 conserved hypothetical protein YutM YP_001422490.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_001422491.1 Na+/nucleoside co-transporter YutK YP_001422492.1 hypothetical protein YuzB YP_001422493.1 NADH dehydrogenase YutJ YP_001422494.1 conserved hypothetical protein YuzD YP_001422495.1 conserved hypothetical protein YutI YP_001422496.1 peptidase YuxL YP_001422497.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_001422498.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_001422499.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_001422500.1 hypothetical protein YutH YP_001422501.1 conserved hypothetical protein YutG YP_001422502.1 conserved hypothetical protein YutF YP_001422503.1 conserved hypothetical protein YutE YP_001422504.1 hypothetical protein YutD YP_001422505.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_001422506.1 conserved hypothetical protein YunA YP_001422507.1 conserved hypothetical protein YunB YP_001422508.1 conserved hypothetical protein YunD YP_001422509.1 conserved hypothetical protein YunE YP_001422510.1 conserved hypothetical protein YunF YP_001422511.1 conserved hypothetical protein YunG YP_001422512.1 Plays a crucial role on both purine and pyrimidine metabolism YP_001422513.1 purine catabolism regulatory protein PucR YP_001422520.1 purine catabolism protein PucG YP_001422521.1 allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide YP_001422522.1 extracellular ribonuclease precursor Bsn YP_001422523.1 COG3839; multiple sugar ABC transporter (ATP-binding protein) YP_001422524.1 may act as a transcriptional regulator of a fructoselysine-induced operon containing the yhfM, yhfN, yhfO, yhfP, yhfQ, and yhfR genes YP_001422525.1 cd01940; sugar kinase, fructose-lysine kinase like; possibly involved in opine biosynthesis YP_001422526.1 UgpE; sugar ABC transporter; inner membrane subunit YP_001422527.1 sugar ABC transporter, inner membrane subunit YP_001422528.1 ABC sugar transporter, periplasmic component; extracellular solute binding protein YP_001422529.1 glutamine-fructose-6-phosphate transaminase/ predicted phosphosugar isomerase; opine catabolism YP_001422531.1 hypothetical protein YbgB YP_001422532.1 conserved hypothetical protein YurQ YP_001422533.1 COG0665; glycine/D-amino acid oxidases (deaminating); possibly involved in opine biosynthesis YP_001422534.1 COG2226; possible methyltransferase in volved in opine biosynthesis YP_001422535.1 hypothetical protein YncE YP_001422536.1 chitosanase; downregulated by plant exudate YP_001422537.1 conserved hypothetical protein YurU YP_001422538.1 iron-sulfur cofactor synthesis protein nifU homolog YurV YP_001422539.1 cysteine desulfurase Csd YP_001422540.1 conserved hypothetical protein YurX YP_001422541.1 ABC transporter (ATP-binding protein) YurY YP_001422542.1 conserved hypothetical protein YurZ YP_001422543.1 conserved hypothetical protein YusA YP_001422544.1 ABC transporter (permease) YusB YP_001422545.1 ABC transporter (ATP-binding protein) YusC YP_001422546.1 hypothetical protein YusD YP_001422547.1 conserved hypothetical protein YusE YP_001422548.1 conserved hypothetical protein YusF YP_001422549.1 hypothetical protein YusG YP_001422550.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_001422551.1 conserved hypothetical protein YusI YP_001422552.1 Acyl-CoA dehydrogenase YusJ YP_001422553.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_001422554.1 3-hydroxyacyl-CoA dehydrogenase YusL YP_001422556.1 proline dehydrogenase YusM YP_001422558.1 hypothetical protein YusN YP_001422559.1 transcriptional regulator, MarR family YusO YP_001422560.1 multidrug-efflux transporter YusP YP_001422561.1 conserved hypothetical protein YusQ YP_001422562.1 conserved hypothetical protein YusR YP_001422563.1 HTH-type transcriptional regulator YusT YP_001422565.1 converts acetoacetate to acetone and carbon dioxide YP_001422567.1 hypothetical protein YusU YP_001422568.1 iron(III) ABC transport ATPase component YP_001422569.1 hypothetical protein YusW YP_001422570.1 oligoendopeptidase YusX YP_001422571.1 oxidoreductase YusZ YP_001422572.1 metalloregulation DNA-binding stress protein MrgA YP_001422573.1 serine protease YvtA YP_001422574.1 two-component reponse regulator; COG0745, OmpR like RR consisting of a CheY-like receiver domain and a winged helix DNA-binding domain; required to control the cellular response to secretion stress YP_001422575.1 two-component sensor histidine kinase; COG0642, BaeS like HK; required to control the cellular response to secretion stress YP_001422576.1 hypothetical protein YirB YP_001422577.1 HTH-type transcriptional regulator YuxN YP_001422578.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_001422580.1 spore germination protein A1 (GerAA) YP_001422581.1 spore germination protein A2 (GerAB) YP_001422582.1 spore germination protein A3 (GerAC) YP_001422583.1 two-component response regulator; COG2197, CitB like RR containing a CheY-like receiver domain and a HTH DNA-binding domain [signal transduction two component system] YP_001422584.1 two-component protein histidine kinase; COG4585; signal transduction two component system YP_001422585.1 conserved hypothetical protein YvqF YP_001422586.1 hypothetical protein YvqG YP_001422587.1 conserved hypothetical protein YvqH YP_001422588.1 hypothetical protein YvqI YP_001422589.1 conserved hypothetical protein YvqJ YP_001422590.1 conserved hypothetical protein YvqK YP_001422591.1 ABC transport system ATP-binding protein YvrA YP_001422592.1 iron permease YvrB YP_001422593.1 iron-binding protein YP_001422594.1 3-oxoacyl-[acyl-carrier-protein] reductase YvrD YP_001422595.1 conserved hypothetical protein YvrE YP_001422596.1 two-component sensor histidine kinase; COG0642, signal transduction YP_001422597.1 two-component response regulator; COG0745; OmpR like family; RR containing a CheY-like receiver domain and a winged-helix DNA binding domain; C-terminus similar YvrH YP_001422598.1 hypothetical protein YvrH2 YP_001422599.1 conserved hypothetical protein YvrI YP_001422601.1 oxalate decarboxylase OxdC YP_001422602.1 hypothetical protein YvrL YP_001422603.1 ferrichrome ABC transporter (ATP-binding protein) FhuC YP_001422604.1 ferrichrome ABC transporter (permease) FhuG YP_001422605.1 ferrichrome ABC transporter (permease) FhuB YP_001422606.1 ferrichrome ABC transporter (ferrichrome binding protein) FhuD YP_001422607.1 conserved hypothetical protein YvsH YP_001422608.1 small acid-soluble spore protein SspJ YP_001422609.1 conserved hypothetical protein YvsG YP_001422610.1 conserved hypothetical protein YvgJ YP_001422611.1 molybdenum-binding protein YvgK YP_001422612.1 molybdate-binding protein YvgL YP_001422613.1 molybdenum transport permease YvgM YP_001422614.1 COG2197, CitB like RR containing a CheY-like receiver domain and an HTH-binding domain YP_001422615.1 COG4585, two component signal transduction mechanism YP_001422619.1 dehydrogenase YvgN YP_001422620.1 stress response protein precursor YvgO YP_001422621.1 conserved hypothetical protein YvgP YP_001422622.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide YP_001422623.1 sulfite reductase (NADPH2) flavoprotein YvgR YP_001422624.1 conserved hypothetical protein YvgS YP_001422625.1 conserved hypothetical protein YvgT YP_001422627.1 disulfide bond formation protein C (BdbC) YP_001422628.1 disulfide bond formation protein D precursor BdbD YP_001422629.1 metal ABC-transporter, ATPase component YvgW YP_001422630.1 copper-transporting P-type ATPase CopA YP_001422631.1 copper chaperone CopZ YP_001422632.1 conserved hypothetical protein YvgZ YP_001422633.1 oxidoreductase YvaA YP_001422634.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds YP_001422639.1 nitrilotriacetate monooxygenase component A (YtnJ) YP_001422640.1 conserved hypothetical protein YtnI YP_001422641.1 conserved hypothetical protein YtmO YP_001422642.1 amino-acid ABC transporter ATP-binding protein;possibly involved in opine transport YP_001422643.1 amino-acid ABC transporter permease protein; possibly involved in octopin transport YP_001422644.1 amino acid ABC transporter (permease) homolog; possibly involved in octopine transport YP_001422645.1 amino-acid ABC transporter (periplasmic binding protein); possibly involved in opine transport YP_001422646.1 amino acid ABC transporter (periplasmic binding protein); possibly involved in opine transport YP_001422647.1 conserved hypothetical protein YtmI YP_001422648.1 transcription regulator LysR family YtlI YP_001422649.1 conservative hypothetical protein YvaG YP_001422650.1 ribonuclease inhibitor YrdF YP_001422651.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_001422652.1 ribonuclease R (3'-5'exoribonuclease) Rnr YP_001422653.1 carboxylesterase YvaK YP_001422655.1 conserved hypothetical protein YvzC YP_001422656.1 conserved hypothetical protein YvaN YP_001422657.1 conserved hypothetical protein YvaO YP_001422658.1 conserved hypothetical protein YvaP YP_001422659.1 subtilin biosynthesis sensor histidine kinase; smart00387; involved in the regulation of biosynthesis of lantibiotic subtilin YP_001422660.1 two-component response regulator; COG0745, OmpR-like RR consisting of a CheY-like receiver domain and a winged helix-DNA-binding domain; involved in regulation of synthesis of lantibiotic subtilin YP_001422661.1 lantibiotic ABC transporter permease SpaG YP_001422662.1 lantibiotic ABC transporter permease SpaE YP_001422663.1 lantibiotic transporter (ATP-binding protein) SpaF YP_001422664.1 choline transport system permease protein OpuBD YP_001422665.1 choline ABC transporter (choline-binding protein) OpuBC YP_001422666.1 choline ABC transporter (membrane protein) OpuBB YP_001422667.1 choline ABC transporter (ATP-binding protein) OpuBA YP_001422668.1 conserved hypothetical protein YvaV YP_001422669.1 glycine betaine/carnitine/choline ABC transporter (permease protein) OpuCD YP_001422670.1 glycine betaine/carnitine/choline ABC transporter (osmoprotectant-binding protein) OpuCC YP_001422671.1 glycine betaine/carnitine/choline ABC transporter (permease protein) OpuCB YP_001422672.1 glycine betaine/carnitine/choline ABC transporter (ATP-binding protein) OpuCA YP_001422673.1 conserved hypothetical protein YvbF YP_001422674.1 conserved hypothetical protein YvbG YP_001422675.1 hypothetical protein YvbI YP_001422676.1 conserved hypothetical protein YvbJ YP_001422677.1 conserved hypothetical protein YvbK YP_001422678.1 probably involved in polysaccharide biosynthesis and elicitation of plant basal defence YP_001422679.1 probably involved in polysaccharide biosynthesis and elicitation of plant basal defence YP_001422680.1 probably involved in polysaccharide biosynthesis and elicitation of plant basal defence YP_001422681.1 probably involved in polysaccharide biosynthesis and elicitation of plant basal defence YP_001422682.1 probably involved in polysaccharide biosynthesis and elicitation of plant basal defence YP_001422683.1 probably involved in polysaccharide biosynthesis and elicitation of plant basal defence YP_001422684.1 probably involved in polysaccharide biosynthesis and elicitation of plant basal defence YP_001422685.1 spore coat polysaccharide biosynthesis protein; probably involved in polysaccharide biosynthesis and elicitation of plant basal defence YP_001422686.1 probably involved in polysaccharide biosynthesis and elicitation of plant basal defence YP_001422687.1 peptidase YP_001422688.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_001422689.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_001422690.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_001422691.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_001422692.1 glyceraldehyde-3-phosphate dehydrogenase GapA YP_001422693.1 central glycolytic genes regulator CggR YP_001422694.1 arabinose-proton symporter AraE YP_001422695.1 transcription repressor of arabinose operon AraR YP_001422696.1 conserved hypothetical protein YvbT YP_001422697.1 conserved hypothetical protein YvbU YP_001422698.1 conserved hypothetical protein YvbV YP_001422699.1 amino acid permease YvbW YP_001422705.1 gluconate kinase GntK YP_001422706.1 gluconate permease GntP YP_001422707.1 conserved hypothetical protein YvbY YP_001422708.1 conserved hypothetical protein YvfW YP_001422709.1 glycolate oxidase YvfV YP_001422711.1 transcriptional regulator YvfI YP_001422712.1 L-lactate permease YvfH YP_001422713.1 RNA polymerase sigma-54 factor SigL YP_001422714.1 hypothetical protein YvfG YP_001422715.1 exopolysaccharide polymerization protein YP_001422716.1 conserved hypothetical protein YP_001422717.1 conserved hypothetical protein YP_001422718.1 conserved hypothetical protein YP_001422720.1 conserved hypothetical protein YP_001422721.1 conserved hypothetical protein YP_001422722.1 spore coat polysaccharide biosynthesis protein YP_001422723.1 protein for capsular polysaccharide biosynthesis YP_001422724.1 capsular polysaccharide biosynthesis protein YP_001422725.1 exopolysaccharide biosynthesis protein YP_001422726.1 capsular polysaccharide biosynthesis protein YP_001422727.1 capsular polysaccharide biosynthesis protein YP_001422728.1 capsular polysaccharide biosynthesis protein YP_001422729.1 capsular polysaccharide biosynthesis protein YP_001422730.1 transcriptional regulator Slr YP_001422731.1 Para-nitrobenzyl esterase (intracellular esterase B) PnbA YP_001422732.1 conserved hypothetical protein YwjB YP_001422733.1 conserved hypothetical protein YyaS YP_001422734.1 protease synthase and sporulation negative regulator PaiA YP_001422735.1 phenolic acid decarboxylase PadC YP_001422736.1 hypothetical protein YveG YP_001422744.1 lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments YP_001422746.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_001422747.1 LysR-family transcription regulator YraN YP_001422748.1 conserved hypothetical protein YraM YP_001422750.1 conserved hypothetical protein YvdD YP_001422751.1 conserved hypothetical protein YvdC YP_001422752.1 transporter YvdB YP_001422753.1 carbonic anhydrase YvdA YP_001422754.1 2-ketogluconate reductase YvcT YP_001422756.1 conserved hypothetical protein YvcN YP_001422757.1 catabolite repression HPr-like protein Crh YP_001422758.1 conserved hypothetical protein YvcL YP_001422759.1 conserved hypothetical protein YvcK YP_001422760.1 conserved hypothetical protein YvcJ YP_001422761.1 conserved hypothetical protein YvcI YP_001422762.1 thioredoxin reductase TrxB YP_001422763.1 conserved hypothetical protein CwlO YP_001422764.1 conserved hypothetical protein YvcD YP_001422767.1 ABC transporter (ATP-binding protein) YvcC YP_001422768.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis YP_001422769.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_001422770.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_001422771.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_001422772.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_001422773.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_001422774.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_001422775.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_001422776.1 conserved hypothetical protein YvpB YP_001422777.1 acetyltransferase YvoF YP_001422778.1 hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr dephosphorylation YP_001422779.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_001422780.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_001422781.1 N-acetylglucosamine-6-phosphate deacetylase NagA YP_001422782.1 N-acetylglucosamine-6-phosphate isomerase NagB YP_001422783.1 transcription regulator YvoA YP_001422784.1 HTH-type transcriptional regulator YxaF YP_001422785.1 conserved hypothetical protein YvnB YP_001422786.1 conserved hypothetical protein YvlD YP_001422787.1 conserved hypothetical protein YvlC YP_001422788.1 conserved hypothetical protein YvlB YP_001422789.1 hypothetical protein YvlA YP_001422790.1 hypothetical protein YvkN YP_001422791.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_001422792.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_001422793.1 membrane protein CsbA YP_001422794.1 conserved hypothetical protein YvkC YP_001422795.1 conserved hypothetical protein YvkB YP_001422796.1 conserved hypothetical protein YvkA YP_001422797.1 conserved hypothetical protein YvjD YP_001422798.1 swarming motility protein YP_001422799.1 periplasmic protease YvjB YP_001422800.1 hypothetical protein YwoF YP_001422801.1 cell-division protein FtsX YP_001422802.1 cell-division ATP-binding protein FtsE YP_001422803.1 cytochrome c551 (CccB) YP_001422804.1 conserved hypothetical protein YvjA YP_001422805.1 peptide chain release factor II (PrfB) YP_001422806.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_001422807.1 conserved hypothetical protein YvyD YP_001422809.1 flagellar protein FliT YP_001422810.1 flagellin specific chaperone YP_001422811.1 flagellin HAP2; involved in flagellin assembly YP_001422812.1 flagellin; involved in elicitation of plant basal defence; upregulation by root exudate YP_001422813.1 affects carbohydrate metabolism; has regulatory role in many processes YP_001422814.1 binds to flagellin and appears to stabilize flagellin during flagella assembly YP_001422815.1 hypothetical protein YviE YP_001422816.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook YP_001422817.1 flagellin HAP1; with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_001422818.1 conserved hypothetical protein YvyG YP_001422819.1 negative regulator of flagellin synthesis (Anti-sigma-D factor) FlgM YP_001422820.1 hypothetical protein YvyF YP_001422821.1 competence protein FC (ComFC) YP_001422822.1 competence protein FB (ComFB) YP_001422823.1 late competence protein ComFA YP_001422824.1 conserved hypothetical protein YviA YP_001422825.1 two-component response regulator DegU YP_001422826.1 two-component sensor histidine kinase DegS YP_001422827.1 conserved hypothetical protein YvyE YP_001422828.1 transcriptional regulator YvhJ YP_001422829.1 undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase ; probably involved in elicitation of plant basal defence YP_001422830.1 teichuronic acid biosynthesis glycosyl transferase; probably involved in elicitation of plant basal defence YP_001422831.1 teichuronic acid biosynthesis glycosyl transferase; probably involved in elicitation of plant basal defence YP_001422832.1 teichuronic acid biosynthesis protein; probably involved in elicitation of plant basal defence YP_001422833.1 teichuronic acid biosynthesis protein; probably involved in elicitation of plant basal defence YP_001422834.1 UDP-glucose 6-dehydrogenase; probably involved in elicitation of plant basal defence YP_001422835.1 teichuronic acid biosynthesis glycosyl transferase; probably involved in elicitation of plant basal defence YP_001422836.1 teichuronic acid biosynthesis protein; probably involved in elicitation of plant basal defence YP_001422837.1 undecaprenyl-phosphate N-acetylgalactosaminyl 1-phosphate transferase; probably involved in elicitation of plant basal defence YP_001422838.1 N-acetylmuramoyl-L-alanine amidase (major autolysin) (CWBP49) YP_001422839.1 amidase enhancer precursor (Modifier protein of major autolysin) YP_001422840.1 membrane bound lipoprotein YP_001422841.1 attenuator function for control of operon expression YP_001422842.1 UDP-N-acetylglucosamine 2-epimerase (UDP-GlcNAc-2- epimerase) YP_001422843.1 UTP-glucose-1-phosphate uridylyltransferase YP_001422844.1 with TagG is involved in the export of teichoic acids YP_001422845.1 teichoic acid translocation permease protein YP_001422846.1 CDP-glycerol:poly (glycerol phosphate) glycero-phosphotransferase YP_001422848.1 glycerol-3-phosphate cytidylyltransferase YP_001422849.1 N-acetylmannosaminyltransferase (major teichoic acid biosynthesis protein A) YP_001422850.1 CDP-glycerol:glycerophosphate glycerophospho transferase (major teichoic acid biosynthesis protein B) YP_001422851.1 beta-N-acetylglucosaminidase (major autolysin) (CWBP90) YP_001422852.1 mannose-6-phosphate isomerase YP_001422853.1 spore germination protein BA YP_001422854.1 spore germination protein BB YP_001422855.1 spore germination protein BC (GerBC) YP_001422857.1 transport protein YwtG YP_001422858.1 transcriptional regulator YwtF YP_001422859.1 conserved hypothetical protein YwtE YP_001422860.1 conserved hypothetical protein YttA YP_001422861.1 gamma-DL-glutamyl hydrolase precursor PgdS YP_001422862.1 hypothetical protein YwtC YP_001422863.1 conserved hypothetical protein YwtB YP_001422864.1 poly-gamma-glutamic synthesis pgsC protein YwtA YP_001422865.1 poly-gamma-glutamic synthesis pgsB protein YwsC YP_001422866.1 spore germination protein GerKA1 YP_001422867.1 spore germination protein GerKB1 YP_001422868.1 spore germination protein GerKC1 YP_001422869.1 ribose operon transcriptional repressor RbsR YP_001422870.1 ribokinase RbsK YP_001422871.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source YP_001422872.1 ribose ABC transporter (ATP-binding protein) RbsA YP_001422873.1 ribose ABC transporter (permease) RbsC YP_001422874.1 ribose ABC transporter (ribose-binding protein) RbsB YP_001422875.1 conserved hypothetical protein YwsB YP_001422876.1 NAD(P)H oxidoreductase YwrO YP_001422877.1 alpha-acetolactate decarboxylase; synthesis of 2,3-butanediol; plant growth promotion and elicitation of plant ISR YP_001422878.1 catalyzes the formation of 2-acetolactate from pyruvate in stationary phase YP_001422879.1 LysR transcription regulator; synthesis of 2,3-butanediol; plant growth promotion and elicitation of plant ISR YP_001422880.1 transporter YwrK YP_001422881.1 hypothetical protein YwrJ YP_001422882.1 spore coat protein B (outer) (CotB) YP_001422883.1 spore coat protein H (inner) (CotH) YP_001422884.1 spore coat protein G (CotG) YP_001422885.1 conserved hypothetical protein YwrF YP_001422888.1 gamma-glutamyltransferase YwrD YP_001422889.1 transcription regulator YwrC YP_001422890.1 chromate transporter YwrB YP_001422891.1 chromate transporter YwrA YP_001422892.1 endonuclease V (yYwqL YP_001422901.1 hypothetical protein YwqJ YP_001422902.1 hypothetical protein YwqI YP_001422903.1 hypothetical protein YwqH YP_001422904.1 conserved hypothetical protein YwqG YP_001422905.1 NDP-sugar dehydrogenase homolog YwqF YP_001422906.1 tyrosine-protein phosphatase YwqE YP_001422907.1 tyrosine-protein kinase YwqD YP_001422908.1 conserved hypothetical protein YwqC YP_001422909.1 conserved hypothetical protein YwqB YP_001422910.1 conserved hypothetical protein YwqA YP_001422911.1 conserved hypothetical protein YwpJ YP_001422912.1 transcriptional regulator (DeoR family) GlcR YP_001422913.1 single-strand DNA-binding protein YwpH YP_001422914.1 hypothetical protein YwpG YP_001422915.1 hypothetical protein YwpF YP_001422916.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_001422917.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_001422918.1 response regulator aspartate phosphatase D (RapD) YP_001422919.1 flagellar hook-basal body complex protein FlhP YP_001422920.1 flagellar hook-basal body complex protein FlhO YP_001422921.1 mreB-like protein Mbl YP_001422922.1 stage III sporulation protein D (SpoIIID) YP_001422923.1 transcriptional regulator YwoH YP_001422924.1 transporter YwoG YP_001422925.1 allantoin permease (Allantoin transportprotein) YwoE YP_001422926.1 conserved hypothetical protein YwoD YP_001422927.1 isochorismatase YwoC YP_001422928.1 ammonium transporter NrgA YP_001422929.1 nitrogen-regulated PII-like protein NrgB YP_001422931.1 conserved hypothetical protein YwoA YP_001422932.1 conserved hypothetical protein YwnJ YP_001422933.1 stage II sporulation protein Q (SpoIIQ) YP_001422934.1 phosphinothricin N-acetyltransferase YwnH YP_001422935.1 hypothetical protein YwnG YP_001422936.1 hypothetical protein YwnF YP_001422937.1 conserved hypothetical protein YwnE YP_001422938.1 hypothetical protein YwnC YP_001422939.1 endo-1,4-beta-xylanase A precursor YP_001422940.1 conserved hypothetical protein YwnA YP_001422941.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits YP_001422942.1 urease (beta subunit) UreB YP_001422943.1 UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter YP_001422944.1 stress response protein CsbD YP_001422945.1 hypothetical protein YwmF YP_001422946.1 aspartate phosphatase response regulator RapB YP_001422947.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z YP_001422948.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth YP_001422949.1 conserved hypothetical protein YwmD YP_001422950.1 conserved hypothetical protein YwmC YP_001422951.1 stage II sporulation protein D (SpoIID) YP_001422952.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001422953.1 hypothetical protein YwmB YP_001422954.1 hypothetical protein YwzB YP_001422955.1 hypothetical protein YwmA YP_001422956.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_001422957.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_001422958.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_001422959.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_001422960.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_001422961.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_001422962.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_001422963.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_001422964.1 ATP synthase (subunit I) AtpI YP_001422965.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_001422966.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_001422967.1 conserved hypothetical protein YwlG YP_001422968.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_001422969.1 low molecular weight phosphatase YwlE YP_001422970.1 conserved hypothetical protein YwlD YP_001422971.1 conserved hypothetical protein YwlC YP_001422972.1 conserved hypothetical protein YwlB YP_001422973.1 stage II sporulation protein R (SpoIIR) YP_001422974.1 conserved hypothetical protein YwlA YP_001422975.1 hypothetical protein YwkF YP_001422976.1 hemK protein homolog YwkE YP_001422977.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_001422978.1 conserved hypothetical protein YwkD YP_001422979.1 remodeling and anchoring of the chromosome protein; in Bacillus subtilis this protein functions in polar chromosome segregation during sporulation; binds inverted sequence motifs called ram along the chromosome; condenses DNA via RacA-RacA interactions YP_001422980.1 hypothetical protein YwkB YP_001422981.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_001422982.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_001422983.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_001422984.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_001422985.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_001422986.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_001422987.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_001422988.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; induced by anaerobic conditions in Bacillus subtilis YP_001422989.1 sporulation initiation phosphotransferase F (Spo0F) YP_001422990.1 hypothetical protein YwjG YP_001422991.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_001422992.1 participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling YP_001422993.1 conserved hypothetical protein YwjF YP_001422994.1 conserved hypothetical protein YwjE YP_001422995.1 UV DNA damage endonuclease UvsE YP_001422996.1 hypothetical protein YwjC YP_001422997.1 ABC transporter ATP-binding protein YwjA YP_001422998.1 cardiolipin synthetase YwiE YP_001423000.1 nitrate reductase (gamma subunit) NarI YP_001423001.1 nitrate reductase delta chain NarJ YP_001423002.1 nitrate reductase beta chain NarH YP_001423003.1 nitrate reductase alpha chain NarG YP_001423004.1 transcriptional regulator ArfM YP_001423005.1 hypothetical protein YwiC YP_001423006.1 anaerobic regulatory protein Fnr YP_001423007.1 nitrite extrusion protein NarK YP_001423008.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_001423009.1 conserved hypothetical protein YwiB YP_001423010.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG YP_001423011.1 conserved hypothetical protein YwhL YP_001423012.1 conserved hypothetical protein YwhK YP_001423013.1 response regulator aspartate phosphatase RapF YP_001423014.1 phosphatase rapF inhibitor PhrF YP_001423021.1 agmatinase (Agmatine ureohydrolase) (AUH) SpeB YP_001423022.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_001423023.1 penicillin-binding protein YwhE YP_001423025.1 hypothetical protein YwhD YP_001423026.1 conserved hypothetical protein YwhC YP_001423027.1 tautomerase YwhB YP_001423028.1 transcription regulator YwhA YP_001423030.1 conserved hypothetical protein YwgA YP_001423031.1 conserved hypothetical protein YwfO YP_001423032.1 hypothetical protein YwzC YP_001423033.1 prespore specific transcriptional regulator RsfA YP_001423042.1 conserved hypothetical protein YwfL YP_001423043.1 transcription regulator, LysR family YwfK YP_001423045.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta YP_001423046.1 conserved hypothetical protein YwfI YP_001423047.1 oxidoreductase YwfH YP_001423048.1 produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however YP_001423049.1 anticapsin/bacilysin excretion protein YP_001423050.1 L-amino acid ligase; COG0439; bacilysin synthesis YP_001423051.1 bacilysin synthesis; COG1028; bacilysin synthetase C YP_001423052.1 bacilysin biosynthesis; COG1917; bacilysin synthetase B YP_001423053.1 bacilysin biosynthesis; pfam00800; bacilysin synthetase A YP_001423054.1 conserved hypothetical protein YwfA YP_001423056.1 amino acid permease RocC YP_001423057.1 arginine degradation protein RocB YP_001423058.1 catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate YP_001423059.1 NAD-specific glutamate dehydrogenase (NAD-GDH) RocG YP_001423066.1 spore coat polysaccharide synthesis protein SpsL YP_001423067.1 spore coat polysaccharide synthesis protei SpsK YP_001423068.1 spore coat polysaccharide synthesis protein SpsJ YP_001423069.1 spore coat polysaccharide synthesis protein SpsI YP_001423070.1 spore coat polysaccharide synthesis protein SpsG YP_001423071.1 spore coat polysaccharide synthesis protein SpsF YP_001423072.1 spore coat polysaccharide synthesis protein SpsE YP_001423073.1 spore coat polysaccharide synthesis protein SpsD YP_001423074.1 spore coat polysaccharide synthesis protein SpsC YP_001423075.1 spore coat polysaccharide synthesis protein SpsB YP_001423076.1 spore coat polysaccharide synthesis protein SpsA YP_001423077.1 hypothetical protein YwdL YP_001423078.1 conserved hypothetical protein YwdK YP_001423079.1 purine permease YwdJ YP_001423080.1 hypothetical protein YwdI YP_001423081.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_001423082.1 glycosyl transferase YwdF YP_001423083.1 hypothetical protein YwdE YP_001423084.1 hypothetical protein YwdD YP_001423086.1 catalyzes the phosphorylation of three vitamin B6 precursors, pyridoxal, pyridoxine and pyridoxamine YP_001423087.1 hypothetical protein YwdA YP_001423088.1 sucrase-6-phosphate hydrolase (Sucrase) (Invertase) SacA YP_001423089.1 phosphotransferase system (PTS) sucrose-specificenzyme IIBC component SacP YP_001423090.1 transcriptional antiterminator SacT YP_001423091.1 hypothetical protein YwcI YP_001423092.1 minor extracellular protease Vpr YP_001423093.1 conserved hypothetical protein YwcH YP_001423096.1 FMN-containing NADPH-linked nitro/flavin reductase NfrA YP_001423097.1 cell-division protein RodA YP_001423098.1 IAA-acetyl-transferase; involved in Trp dependent IAA synthesis. Mutant ysnE was found impaired in IAA production and plant growth promotion YP_001423099.1 hypothetical protein YwcE YP_001423100.1 quinol oxidase subunit IV QoxD YP_001423101.1 quinol oxidase subunit III QoxC YP_001423102.1 quinol oxidase polypeptide I QoxB YP_001423103.1 quinol oxidase subunit II precursor QoxA YP_001423104.1 hypothetical protein YdaS YP_001423105.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism YP_001423106.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism YP_001423107.1 conserved hypothetical protein YwcD YP_001423108.1 conserved hypothetical protein YwcC YP_001423112.1 conserved hypothetical protein YwbO YP_001423113.1 conserved hypothetical protein YwbN YP_001423114.1 hypothetical protein YwbM YP_001423115.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_001423116.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP YP_001423117.1 transcription regulator YwbI YP_001423118.1 increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation; inhibited by the antiholin-like proteins lrgAB YP_001423119.1 conserved hypothetical protein YwbG YP_001423120.1 conserved hypothetical protein YwbE YP_001423123.1 conserved hypothetical protein YwbD YP_001423124.1 conserved hypothetical protein YwbC YP_001423125.1 PTS system IIBC component YwbA YP_001423126.1 minor extracellular protease Epr precursor YP_001423127.1 general stress protein A (GspA) YP_001423128.1 conserved hypothetical protein YwaC YP_001423129.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_001423131.1 transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid YP_001423132.1 D-alanine export protein DltB YP_001423133.1 D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid YP_001423134.1 undecaprenol-phosphate-poly(glycerophosphate chain) D-alanine transfer protein DltD YP_001423135.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_001423136.1 6-phospho-beta-glucosidase LicH YP_001423137.1 phosphotransferase system (PTS) lichenan specific enzyme IIA component LicA YP_001423138.1 phosphotransferase system (PTS) lichenan specific enzyme IIC component LicC YP_001423139.1 phosphotransferase system (PTS) lichenan specific enzyme IIB component LicB YP_001423140.1 licABCH operon regulator LicR YP_001423141.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair YP_001423145.1 transcriptional regulator, arsR family YP_001423146.1 arsenical pump membrane protein YP_001423147.1 cellobiose phosphotransferase system enzyme YP_001423148.1 cellobiose phosphotransferase system enzyme YP_001423149.1 cellobiose phosphotransferase system enzyme YdhO YP_001423150.1 beta-glucosidase YdhP YP_001423151.1 fructokinase YdhR YP_001423152.1 mannose-6-phosphate isomerase YdhS YP_001423153.1 Mannan endo-1,4-beta-mannosidase YdhT YP_001423154.1 major catalase KatX YP_001423155.1 penicillin amidase YxeI YP_001423156.1 purine-cytosine permease YxlA YP_001423157.1 conserved hypothetical protein YxkO YP_001423158.1 ABC membrane transporter (ATP-binding protein) CydD YP_001423159.1 ABC membrane transporter (ATP-binding protein) CydC YP_001423160.1 cytochrome d ubiquinol oxidase (subunit II) CydB YP_001423161.1 cytochrome d ubiquinol oxidase (subunit I) CydA YP_001423162.1 citrate/malate transporter CimH YP_001423163.1 conserved hypothetical protein YxkH YP_001423164.1 multiple sugar-binding transport ATP-binding protein MsmX YP_001423165.1 hypothetical protein YxkF YP_001423166.1 conserved hypothetical protein YxkD YP_001423167.1 hypothetical protein YxkC YP_001423168.1 UDP-glucose 4-epimerase GalE YP_001423169.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_001423170.1 hypothetical protein YxjJ YP_001423171.1 conserved hypothetical protein YxjI YP_001423172.1 conserved hypothetical protein YxjG YP_001423173.1 hypothetical protein YxjB YP_001423174.1 transport protein YxjA YP_001423176.1 hypothetical protein YxiS YP_001423177.1 catalase KatE YP_001423178.1 citrate transporter CitH YP_001423179.1 pfam00722; glyco_hydro_16; endo-beta-1,3-1,4 glucanase YP_001423180.1 transcriptional antiterminator (BglG family) LicT YP_001423181.1 conserved hypothetical protein YxiO YP_001423182.1 ATP-dependent RNA helicase DbpA YP_001423186.1 hypothetical protein YxiI YP_001423187.1 hypothetical protein YxiK YP_001423188.1 hypothetical protein YxiG YP_001423189.1 hypothetical protein YxxG YP_001423192.1 pectate lyase PelB YP_001423193.1 conserved hypothetical protein YxxF YP_001423194.1 conserved hypothetical protein YxiE YP_001423195.1 beta-glucosidase BglH YP_001423196.1 phosphotransferase system (PTS) beta-glucoside-specific enzyme IIBCA component BglP YP_001423199.1 conserved hypothetical protein YxiA YP_001423200.1 regulates expression of hut operon by antitermination mechanism; forms a homohexamer; binds both magnesium and L-histidine and then binds RNA sequences within the terminator region and destabilizes the terminator structure YP_001423201.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_001423202.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_001423203.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_001423204.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate YP_001423205.1 histidine permease HutM YP_001423206.1 Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway YP_001423207.1 pyrimidine-nucleoside transport protein NupC YP_001423208.1 deoxyribose-phosphate aldolase DeoC YP_001423209.1 deoxyribonucleoside negative regulator DeoR YP_001423210.1 conserved hypothetical protein YxeH YP_001423211.1 hypothetical protein YxeG YP_001423212.1 hypothetical protein YxeF YP_001423213.1 hypothetical protein YxeE YP_001423214.1 hypothetical protein YxeD YP_001423215.1 conserved hypothetical protein YxeC YP_001423216.1 ABC transporter (binding protein) YxeB YP_001423219.1 hypothetical protein YxeA YP_001423220.1 hypothetical protein YxdM YP_001423221.1 ABC transporter (ATP-binding protein) YxdL YP_001423222.1 two-component sensor histidine kinase YxdK YP_001423223.1 two-component response regulator YxdJ YP_001423224.1 sensor histidine kinase MrsK2 YP_001423225.1 response-regulator MrsR2 YP_001423226.1 ABC transporter, ATP-binding protein MrsF YP_001423227.1 ABC-transporter integral membrane protein MrsG YP_001423228.1 ABC-transporter integral membrane protein MrsE YP_001423229.1 fructose-1,6-bisphosphate aldolase FbaB YP_001423230.1 inositol utilization protein I (IolI) YP_001423231.1 inositol utilization protein H (IolH) YP_001423232.1 myo-inositol 2-dehydrogenase IolG YP_001423233.1 inositol transport protein IolF YP_001423234.1 inositol utilization protein E (IolE) YP_001423235.1 inositol utilization protein D (IolD) YP_001423236.1 inositol utilization protein C (IolC) YP_001423237.1 inositol utilization protein B (IolB) YP_001423238.1 methylmalonate-semialdehyde dehydrogenase IolA YP_001423239.1 iol operon repressor (DNA-binding protein) IolR YP_001423240.1 inositol utilization protein S (IolS) YP_001423241.1 sugar transporter CsbC YP_001423242.1 molecular chaperone YP_001423243.1 hypothetical protein YxcA YP_001423244.1 hypothetical oxidoreductase YxbG YP_001423245.1 response regulators YocG YP_001423246.1 two-component sensor histidine kinase YocF YP_001423247.1 fatty acid desaturase Des YP_001423248.1 conserved hypothetical protein YxbF YP_001423249.1 aldehyde dehydrogenase AldX YP_001423250.1 conserved hypothetical protein YxaL YP_001423251.1 hypothetical protein YxaJ YP_001423254.1 conserved hypothetical protein YxaI YP_001423256.1 alkyl hydroperoxide reductase subunit C (small subunit) AhpC YP_001423257.1 alkyl hydroperoxide reductase (large subunit) and NADH dehydrogenase AhpF YP_001423259.1 amino acid permease YdgF YP_001423260.1 fructose-1,6-bisphosphatase Fbp YP_001423275.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_001423278.1 hypothetical protein YycP YP_001423279.1 conserved hypothetical protein; expressed in presence of soil extract YP_001423281.1 conserved hypothetical protein YycN YP_001423283.1 arginase RocF YP_001423284.1 amino acid permease RocE YP_001423285.1 ornithine aminotransferase RocD YP_001423286.1 arginine utilization regulatory protein RocR YP_001423295.1 serine proteinase YyxA YP_001423296.1 conserved hypothetical protein YycJ YP_001423297.1 conserved hypothetical protein YycI YP_001423298.1 conserved hypothetical protein YycH YP_001423299.1 two-component sensor histidine kinase YycG YP_001423300.1 two-component response regulator YycF YP_001423301.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_001423302.1 conserved hypothetical protein YycE YP_001423303.1 unwinds double stranded DNA YP_001423304.1 hypothetical protein YycD YP_001423305.1 hypothetical protein YyzB YP_001423306.1 hypothetical protein YycC YP_001423307.1 hypothetical protein YycA YP_001423314.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_001423315.1 conserved hypothetical protein YybT YP_001423316.1 conserved hypothetical protein YybS YP_001423317.1 spore coat protein F (CotF) YP_001423318.1 conserved hypothetical protein YybR YP_001423319.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_001423321.1 levansucrase; pfam02435; glycosyl hydrolase family 68; levan is implicated in the aggregation of wheatroot-adhering soil YP_001423322.1 conserved hypothetical protein YveB YP_001423324.1 nuclease inhibitor DinB YP_001423325.1 hypothetical protein YfmI1 YP_001423326.1 hypothetical protein YfmI2 YP_001423329.1 conserved hypothetical protein YybF YP_001423330.1 HTH-type transcriptional regulator YybE YP_001423332.1 NADH dehydrogenase YdgI YP_001423333.1 HTH-type transcriptional regulator YdgJ YP_001423334.1 conserved hypothetical protein YdeO YP_001423335.1 transcription regulator homolog YybA YP_001423336.1 conserved hypothetical protein YyaT YP_001423340.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_001423342.1 hypothetical protein YyaL1 YP_001423344.1 conserved hypothetical protei YnaF YP_001423346.1 conserved hypothetical protein YyaL YP_001423347.1 conserved hypothetical protein YyaK YP_001423348.1 conserved hypothetical protein YyaJ YP_001423349.1 conserved hypothetical protein YyaH YP_001423350.1 catabolite control protein B (CcpB) YP_001423351.1 exodeoxyribonuclease ExoA YP_001423352.1 O-6-methylguanine-DNA alkyltransferase AdaB YP_001423353.1 methylphosphotriester-DNA alkyltransferase AdaA YP_001423354.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_001423355.1 single-strand DNA-binding protein (Helix-destabilizing protein) Ssb YP_001423356.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_001423357.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_001423358.1 conserved hypothetical protein YyaE YP_001423360.1 conserved hypothetical protein YyaD YP_001423362.1 conserved hypothetical protein YyaC YP_001423363.1 stage 0 sporulation protein J (Spo0J) YP_001423364.1 sporulation initiation inhibitor protein Soj YP_001423365.1 conserved hypothetical protein YyaA YP_001423366.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_001423367.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_001423368.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_001423369.1 spoIIIJ-associated proteinJag YP_001423370.1 involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site; necessary for sporulation YP_001423371.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_001423372.1 in Escherichia coli transcription of this gene is enhanced by polyamines