-- dump date   	20140618_212247
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_002808673.1	identified by glimmer; putative
YP_002808675.1	identified by match to protein family HMM PF00877
YP_002808678.1	identified by glimmer; putative
YP_002808679.1	identified by glimmer; putative
YP_002808680.1	identified by glimmer; putative
YP_002808682.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002808683.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002808684.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002808685.1	identified by glimmer; putative
YP_002808686.1	identified by glimmer; putative
YP_002808687.1	identified by glimmer; putative
YP_002808688.1	identified by glimmer; putative
YP_002808689.1	identified by glimmer; putative
YP_002808690.1	identified by glimmer; putative
YP_002808691.1	identified by match to protein family HMM PF00437
YP_002808692.1	identified by glimmer; putative
YP_002808693.1	identified by glimmer; putative
YP_002808694.1	identified by glimmer; putative
YP_002808695.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002808696.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002808697.1	identified by glimmer; putative
YP_002808698.1	identified by glimmer; putative
YP_002808699.1	identified by glimmer; putative
YP_002808700.1	identified by glimmer; putative
YP_002808701.1	identified by glimmer; putative
YP_002808704.1	identified by glimmer; putative
YP_002808705.1	identified by glimmer; putative
YP_002808706.1	identified by glimmer; putative
YP_002808707.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002808708.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002808709.1	identified by glimmer; putative
YP_002808711.1	identified by match to protein family HMM PF08708
YP_002808712.1	identified by glimmer; putative
YP_002808713.1	identified by match to protein family HMM PF01656
YP_002808715.1	identified by glimmer; putative
YP_002808716.1	identified by glimmer; putative
YP_002808717.1	identified by glimmer; putative
YP_002808718.1	identified by glimmer; putative
YP_002808719.1	identified by match to protein family HMM PF00395; match to protein family HMM PF01520
YP_002808720.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00665
YP_002808721.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002808722.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002808723.1	identified by glimmer; putative
YP_002808724.1	identified by match to protein family HMM PF01906
YP_002808725.1	identified by match to protein family HMM PF02517
YP_002808726.1	identified by glimmer; putative
YP_002808727.1	identified by glimmer; putative
YP_002808728.1	identified by match to protein family HMM PF00440
YP_002808729.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01609
YP_002808730.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002808731.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01569
YP_002808732.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002808734.1	identified by glimmer; putative
YP_002808735.1	identified by glimmer; putative
YP_002808736.1	identified by match to protein family HMM PF05043; match to protein family HMM PF08279; match to protein family HMM PF08280
YP_002808737.1	identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655
YP_002808739.1	identified by match to protein family HMM PF01019
YP_002808740.1	identified by match to protein family HMM PF09587
YP_002808742.1	identified by match to protein family HMM PF08245
YP_002808743.1	identified by glimmer; putative
YP_002808745.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002808746.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002808747.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002808748.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_002808749.1	identified by glimmer; putative
YP_002808750.1	identified by match to protein family HMM PF09385
YP_002808751.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08279; match to protein family HMM PF08280
YP_002808752.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00874
YP_002808753.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002808754.1	identified by glimmer; putative
YP_002808755.1	identified by match to protein family HMM PF01810; match to protein family HMM TIGR00949
YP_002808756.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002808757.1	identified by match to protein family HMM PF05043; match to protein family HMM PF08279; match to protein family HMM PF08280
YP_002808760.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002808761.1	identified by glimmer; putative
YP_002808762.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02517
YP_002808763.1	identified by match to protein family HMM PF00496
YP_002808767.1	identified by match to protein family HMM PF00817
YP_002808768.1	identified by match to protein family HMM PF08863
YP_002808773.1	identified by glimmer; putative
YP_002808774.1	identified by match to protein family HMM PF00589
YP_002808777.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02517
YP_002808778.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01131; match to protein family HMM PF01396
YP_002808779.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01751
YP_002808781.1	identified by match to protein family HMM PF04307
YP_002808787.1	identified by glimmer; putative
YP_002808788.1	identified by glimmer; putative
YP_002811440.1	identified by glimmer; putative
YP_002811441.1	identified by glimmer; putative
YP_002811442.1	identified by glimmer; putative
YP_002811443.1	identified by glimmer; putative
YP_002811444.1	identified by glimmer; putative
YP_002811445.1	identified by glimmer; putative
YP_002811446.1	identified by glimmer; putative
YP_002811447.1	identified by glimmer; putative
YP_002811448.1	identified by glimmer; putative
YP_002811449.1	identified by glimmer; putative
YP_002811450.1	identified by match to protein family HMM PF00078; match to protein family HMM PF01844; match to protein family HMM PF08388
YP_002811451.1	identified by glimmer; putative
YP_002811452.1	identified by glimmer; putative
YP_002811453.1	identified by glimmer; putative
YP_002811454.1	identified by glimmer; putative
YP_002811455.1	identified by glimmer; putative
YP_002811456.1	identified by glimmer; putative
YP_002811457.1	identified by glimmer; putative
YP_002811459.1	identified by glimmer; putative
YP_002811460.1	identified by glimmer; putative
YP_002811462.1	identified by match to protein family HMM PF02899
YP_002811463.1	identified by glimmer; putative
YP_002811464.1	identified by glimmer; putative
YP_002811465.1	identified by glimmer; putative
YP_002811466.1	identified by glimmer; putative
YP_002811467.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811468.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811469.1	identified by match to protein family HMM PF05168
YP_002811470.1	identified by match to protein family HMM PF00078; match to protein family HMM PF01844
YP_002811471.1	identified by glimmer; putative
YP_002811472.1	identified by match to protein family HMM PF01909
YP_002811473.1	identified by glimmer; putative
YP_002811474.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811475.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811476.1	identified by glimmer; putative
YP_002811477.1	identified by glimmer; putative
YP_002811478.1	identified by glimmer; putative
YP_002811479.1	identified by glimmer; putative
YP_002811480.1	identified by glimmer; putative
YP_002811481.1	identified by glimmer; putative
YP_002811482.1	identified by glimmer; putative
YP_002811483.1	identified by glimmer; putative
YP_002811484.1	identified by match to protein family HMM PF01909
YP_002811485.1	identified by match to protein family HMM PF00440
YP_002811486.1	identified by match to protein family HMM PF01609
YP_002811487.1	identified by match to protein family HMM PF01609
YP_002811488.1	identified by match to protein family HMM PF00583
YP_002811489.1	identified by glimmer; putative
YP_002811490.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF07751
YP_002811491.1	identified by glimmer; putative
YP_002811492.1	identified by glimmer; putative
YP_002811493.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01609
YP_002811496.1	identified by match to protein family HMM PF01381
YP_002811497.1	identified by glimmer; putative
YP_002811498.1	identified by match to protein family HMM PF09397
YP_002811499.1	identified by glimmer; putative
YP_002811500.1	identified by glimmer; putative
YP_002811501.1	identified by match to protein family HMM PF00091
YP_002811503.1	identified by glimmer; putative
YP_002811504.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811506.1	identified by glimmer; putative
YP_002811507.1	identified by glimmer; putative
YP_002811508.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002811509.1	identified by glimmer; putative
YP_002811510.1	identified by match to protein family HMM PF00395
YP_002811514.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08666; match to protein family HMM TIGR03177
YP_002811516.1	identified by match to protein family HMM PF00437
YP_002811518.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811519.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811523.1	identified by glimmer; putative
YP_002811524.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811525.1	identified by glimmer; putative
YP_002811526.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811527.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811528.1	identified by glimmer; putative
YP_002811529.1	identified by match to protein family HMM TIGR01784
YP_002811530.1	identified by glimmer; putative
YP_002811532.1	identified by glimmer; putative
YP_002811533.1	identified by glimmer; putative
YP_002811534.1	identified by glimmer; putative
YP_002811535.1	identified by glimmer; putative
YP_002811536.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811537.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002811538.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002811539.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002811540.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00877; match to protein family HMM PF01551
YP_002811544.1	identified by glimmer; putative
YP_002811545.1	identified by match to protein family HMM PF02517
YP_002811546.1	identified by match to protein family HMM PF04171; match to protein family HMM PF04235
YP_002811547.1	identified by glimmer; putative
YP_002811548.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF05031
YP_002811549.1	identified by glimmer; putative
YP_002811550.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002811551.1	identified by glimmer; putative
YP_002811552.1	identified by match to protein family HMM PF00395
YP_002811553.1	identified by match to protein family HMM PF01569
YP_002811556.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811557.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00535; match to protein family HMM PF03142
YP_002811558.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099
YP_002811559.1	identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026
YP_002811560.1	identified by glimmer; putative
YP_002811561.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811562.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811563.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811564.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811565.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811566.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811568.1	identified by glimmer; putative
YP_002811569.1	identified by glimmer; putative
YP_002811571.1	identified by glimmer; putative
YP_002811572.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811573.1	identified by match to protein family HMM PF03497; match to protein family HMM PF07737
YP_002811574.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811575.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00156
YP_002811576.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811577.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811578.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811580.1	identified by match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279; match to protein family HMM PF08280
YP_002811581.1	identified by match to protein family HMM PF09385
YP_002811582.1	identified by glimmer; putative
YP_002811585.1	identified by glimmer; putative
YP_002811586.1	identified by match to protein family HMM PF01526
YP_002811587.1	identified by match to protein family HMM PF00239; match to protein family HMM PF02796
YP_002811588.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_002811589.1	identified by match to protein family HMM PF03323
YP_002811590.1	identified by match to protein family HMM TIGR02887
YP_002811591.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002811592.1	identified by glimmer; putative
YP_002811593.1	identified by glimmer; putative
YP_002811594.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811595.1	identified by glimmer; putative
YP_002811596.1	identified by match to protein family HMM PF03495; match to protein family HMM PF07691
YP_002811597.1	identified by match to protein family HMM PF01022
YP_002811598.1	identified by glimmer; putative
YP_002811599.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811600.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811601.1	identified by match to protein family HMM PF07737
YP_002811602.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811603.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811604.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811605.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811606.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811609.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002811610.1	identified by match to protein family HMM PF00589
YP_002811611.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811612.1	identified by glimmer; putative
YP_002811614.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811615.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002811616.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002811617.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002811618.1	identified by match to protein family HMM PF06013
YP_002811619.1	identified by glimmer; putative
YP_002811620.1	identified by match to protein family HMM PF00665
YP_002811621.1	identified by match to protein family HMM PF01527
YP_002811623.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002811624.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002811625.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002811626.1	identified by match to protein family HMM PF09223
YP_002811627.1	identified by glimmer; putative
YP_002811628.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS
YP_002811629.1	identified by glimmer; putative
YP_002811630.1	identified by glimmer; putative
YP_002811632.1	identified by glimmer; putative
YP_002811635.1	identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383
YP_002811636.1	identified by match to protein family HMM PF01022
YP_002811637.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02600
YP_002811640.1	identified by match to protein family HMM PF00565
YP_002811642.1	identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751
YP_002811643.1	identified by match to protein family HMM PF07282
YP_002811644.1	identified by glimmer; putative
YP_002812688.1	binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.
YP_002812689.1	binds the polymerase to DNA and acts as a sliding clamp
YP_002812690.1	identified by match to protein family HMM TIGR02988
YP_002812691.1	Required for DNA replication; binds preferentially to single-stranded, linear DNA
YP_002812692.1	negatively supercoils closed circular double-stranded DNA
YP_002812693.1	negatively supercoils closed circular double-stranded DNA
YP_002812694.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002812695.1	catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate
YP_002812696.1	identified by match to protein family HMM PF00768; match to protein family HMM PF07943
YP_002812697.1	with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate
YP_002812698.1	with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate
YP_002812699.1	catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002812700.1	identified by glimmer; putative
YP_002812701.1	identified by match to protein family HMM PF01712
YP_002812702.1	identified by match to protein family HMM PF01712
YP_002812703.1	identified by match to protein family HMM PF00857
YP_002812704.1	identified by match to protein family HMM PF00383
YP_002812705.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA
YP_002812706.1	identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103
YP_002812707.1	involved in a recombinational process of DNA repair, independent of the recBC complex
YP_002812709.1	identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862
YP_002812711.1	identified by match to protein family HMM PF01276; match to protein family HMM PF03711
YP_002812712.1	catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP)
YP_002812713.1	catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA
YP_002812714.1	identified by match to protein family HMM PF04468
YP_002812715.1	in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA
YP_002812717.1	identified by match to protein family HMM PF01541
YP_002812718.1	identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096
YP_002812719.1	identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439
YP_002812720.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_002812721.1	identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010
YP_002812722.1	identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334
YP_002812723.1	catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin
YP_002812724.1	identified by match to protein family HMM PF05582; match to protein family HMM TIGR02855
YP_002812725.1	identified by match to protein family HMM PF06257
YP_002812727.1	An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis
YP_002812728.1	identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743
YP_002812729.1	identified by glimmer; putative
YP_002812730.1	identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004
YP_002812731.1	stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus
YP_002812732.1	forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis
YP_002812733.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP
YP_002812734.1	Enables the recycling of peptidyl-tRNAs produced at termination of translation
YP_002812736.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580
YP_002812737.1	identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; match to protein family HMM TIGR02851
YP_002812738.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023
YP_002812739.1	identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444
YP_002812740.1	identified by match to protein family HMM PF01479
YP_002812741.1	identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892
YP_002812742.1	identified by match to protein family HMM PF09578; match to protein family HMM TIGR02893
YP_002812743.1	identified by match to protein family HMM PF04977
YP_002812744.1	identified by match to protein family HMM PF00575
YP_002812745.1	identified by match to protein family HMM PF07228; match to protein family HMM TIGR02865
YP_002812746.1	identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433
YP_002812747.1	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203
YP_002812748.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241
YP_002812749.1	type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP
YP_002812750.1	becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers
YP_002812751.1	identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139
YP_002812752.1	identified by match to protein family HMM PF00425; match to protein family HMM PF04715
YP_002812753.1	amphibolic enzyme subunit from Bacillus subtilis performs both in anthranilate and para-aminobenzoate synthesis
YP_002812754.1	catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate
YP_002812755.1	identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496
YP_002812756.1	identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526
YP_002812757.1	identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498
YP_002812758.1	identified by match to protein family HMM PF01381
YP_002812759.1	identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737
YP_002812760.1	class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1
YP_002812761.1	identified by match to protein family HMM PF05848
YP_002812762.1	identified by match to protein family HMM PF02151
YP_002812763.1	identified by match to protein family HMM PF00217
YP_002812764.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728
YP_002812765.1	Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents
YP_002812766.1	non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair
YP_002812767.1	identified by match to protein family HMM PF01850; match to protein family HMM PF01938
YP_002812768.1	4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers
YP_002812769.1	catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
YP_002812770.1	Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation
YP_002812771.1	identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172
YP_002812772.1	catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA
YP_002812773.1	identified by match to protein family HMM PF00636
YP_002812774.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186
YP_002812775.1	identified by match to protein family HMM PF05991
YP_002812776.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_002812777.1	forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force
YP_002812778.1	Modulates Rho-dependent transcription termination
YP_002812779.1	binds directly to 23S ribosomal RNA
YP_002812780.1	in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA
YP_002812781.1	binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit
YP_002812782.1	present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors
YP_002812783.1	identified by match to protein family HMM PF05175; match to protein family HMM PF08242
YP_002812784.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme
YP_002812785.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter
YP_002812786.1	identified by match to protein family HMM PF01248
YP_002812787.1	interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance
YP_002812788.1	binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit
YP_002812789.1	EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene
YP_002812790.1	EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu
YP_002812791.1	NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex
YP_002812792.1	binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin
YP_002812793.1	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA
YP_002812794.1	binds third domain of 23S rRNA and protein L29; part of exit tunnel
YP_002812795.1	one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation
YP_002812796.1	protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
YP_002812797.1	binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center
YP_002812798.1	forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation
YP_002812799.1	located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e
YP_002812800.1	one of the stabilizing components for the large ribosomal subunit
YP_002812801.1	primary binding protein; helps mediate assembly; involved in translation fidelity
YP_002812802.1	binds to the 23S rRNA between the centers for peptidyl transferase and GTPase
YP_002812803.1	assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel
YP_002812804.1	part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13
YP_002812805.1	located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif
YP_002812806.1	binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
YP_002812807.1	ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance
YP_002812808.1	binds 5S rRNA along with protein L5 and L25
YP_002812809.1	located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance
YP_002812810.1	L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7
YP_002812811.1	late assembly protein
YP_002812812.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_002812813.1	essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP
YP_002812814.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_002812815.1	stimulates the activities of the other two initiation factors, IF-2 and IF-3
YP_002812816.1	smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif
YP_002812817.1	located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA
YP_002812818.1	located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3
YP_002812819.1	catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme
YP_002812820.1	is a component of the macrolide binding site in the peptidyl transferase center
YP_002812821.1	with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene
YP_002812822.1	with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene
YP_002812823.1	identified by match to protein family HMM PF02361
YP_002812824.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_002812825.1	in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit
YP_002812826.1	forms a direct contact with the tRNA during translation
YP_002812828.1	identified by match to protein family HMM PF01520; match to protein family HMM TIGR02883
YP_002812829.1	identified by match to protein family HMM PF01883
YP_002812832.1	identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764
YP_002812834.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002812835.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045
YP_002812836.1	identified by match to protein family HMM PF00491; match to protein family HMM TIGR01229
YP_002812837.1	identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159
YP_002812838.1	identified by match to protein family HMM PF07949
YP_002812839.1	catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
YP_002812840.1	Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source
YP_002812841.1	identified by match to protein family HMM PF00561
YP_002812842.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_002812843.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00370
YP_002812844.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF02782
YP_002812845.1	identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791
YP_002812846.1	catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate
YP_002812847.1	identified by match to protein family HMM PF00326; match to protein family HMM PF07676
YP_002812849.1	identified by match to protein family HMM PF04173; match to protein family HMM PF07681
YP_002812851.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_002812852.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002812853.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002812854.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative
YP_002812855.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002812856.1	identified by match to protein family HMM PF00528
YP_002812857.1	identified by match to protein family HMM PF00005; match to protein family HMM PF09383
YP_002812858.1	identified by match to protein family HMM PF03180
YP_002812859.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002812861.1	identified by match to protein family HMM PF01565
YP_002812864.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710
YP_002812866.1	identified by glimmer; putative
YP_002812867.1	identified by match to protein family HMM PF00528
YP_002812868.1	identified by match to protein family HMM PF00528
YP_002812869.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_002812870.1	identified by match to protein family HMM PF00005
YP_002812871.1	identified by match to protein family HMM PF00496
YP_002812873.1	identified by match to protein family HMM PF00165
YP_002812876.1	identified by match to protein family HMM PF00496
YP_002812877.1	identified by match to protein family HMM PF00496
YP_002812878.1	identified by match to protein family HMM PF00248
YP_002812879.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_002812880.1	identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528
YP_002812881.1	identified by match to protein family HMM PF06800
YP_002812882.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141
YP_002812883.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002812884.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01256
YP_002812885.1	identified by match to protein family HMM PF05930; match to protein family HMM TIGR01764
YP_002812886.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002812887.1	identified by match to protein family HMM PF00892
YP_002812888.1	identified by glimmer; putative
YP_002812889.1	identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530
YP_002812890.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002812891.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_002812892.1	identified by match to protein family HMM PF02588
YP_002812893.1	identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655
YP_002812894.1	identified by glimmer; putative
YP_002812895.1	identified by match to protein family HMM PF01026
YP_002812897.1	identified by match to protein family HMM PF01464
YP_002812901.1	identified by glimmer; putative
YP_002812902.1	identified by match to protein family HMM PF00005
YP_002812903.1	identified by glimmer; putative
YP_002812904.1	identified by glimmer; putative
YP_002812905.1	identified by match to protein family HMM PF00496
YP_002812906.1	identified by match to protein family HMM PF00528
YP_002812907.1	identified by match to protein family HMM PF00528
YP_002812908.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_002812909.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_002812910.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08282
YP_002812911.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002812913.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002812914.1	identified by glimmer; putative
YP_002812915.1	identified by glimmer; putative
YP_002812916.1	identified by glimmer; putative
YP_002812917.1	identified by match to protein family HMM PF00903; match to protein family HMM TIGR01263
YP_002812918.1	identified by match to protein family HMM PF01557
YP_002812919.1	identified by match to protein family HMM PF04209
YP_002812920.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07690
YP_002812921.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01820
YP_002812923.1	identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143
YP_002812924.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_002812925.1	identified by match to protein family HMM PF03851; match to protein family HMM TIGR00629
YP_002812926.1	identified by match to protein family HMM PF01694
YP_002812927.1	Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids
YP_002812929.1	identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492
YP_002812931.1	identified by match to protein family HMM PF02452
YP_002812932.1	identified by match to protein family HMM PF00575; match to protein family HMM PF09371
YP_002812933.1	identified by match to protein family HMM PF03926
YP_002812934.1	identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150
YP_002812935.1	identified by match to protein family HMM PF00814
YP_002812936.1	identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575
YP_002812937.1	in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity
YP_002812938.1	identified by match to protein family HMM PF00005
YP_002812939.1	modulates transcription in response to the NADH/NAD(+) redox state
YP_002812941.1	identified by match to protein family HMM PF02517
YP_002812942.1	10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring
YP_002812943.1	60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth
YP_002812944.1	contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway
YP_002812945.1	identified by match to protein family HMM PF00860
YP_002812946.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002812947.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002812948.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002812949.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002812950.1	identified by match to protein family HMM PF08241
YP_002812951.1	identified by glimmer; putative
YP_002812952.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01370
YP_002812953.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002812954.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002812955.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00534
YP_002812956.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002812957.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_002812959.1	identified by match to protein family HMM PF00005
YP_002812960.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002812961.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002812962.1	identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162
YP_002812963.1	With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway
YP_002812964.1	Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide
YP_002812965.1	catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase
YP_002812966.1	With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway
YP_002812967.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_002812968.1	catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis
YP_002812969.1	Catalyzes first step of the de novo purine nucleotide biosynthetic pathway
YP_002812970.1	catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis
YP_002812971.1	glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate
YP_002812972.1	involved in de novo purine biosynthesis
YP_002812973.1	catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis
YP_002812975.1	identified by match to protein family HMM PF01145
YP_002812977.1	PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer
YP_002812978.1	identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073
YP_002812979.1	this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB
YP_002812980.1	identified by match to protein family HMM PF07537
YP_002812981.1	identified by match to protein family HMM PF01925
YP_002812982.1	catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate
YP_002812984.1	identified by match to protein family HMM PF00857
YP_002812985.1	identified by match to protein family HMM PF00005; match to protein family HMM PF09383
YP_002812986.1	identified by match to protein family HMM PF00528
YP_002812987.1	identified by match to protein family HMM PF03180
YP_002812988.1	identified by glimmer; putative
YP_002812989.1	identified by glimmer; putative
YP_002812990.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002812991.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02374
YP_002812992.1	identified by match to protein family HMM PF01047
YP_002812993.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05360
YP_002812994.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain
YP_002812995.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_002812996.1	allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA
YP_002812997.1	similar to YegS from E. coli
YP_002812998.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549
YP_002812999.1	catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate
YP_002813000.1	identified by match to protein family HMM PF00158; match to protein family HMM PF07728; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_002813001.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780
YP_002813002.1	identified by match to protein family HMM PF00893
YP_002813003.1	identified by match to protein family HMM PF02073
YP_002813004.1	identified by match to protein family HMM PF01522
YP_002813005.1	identified by match to protein family HMM PF01522
YP_002813006.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670
YP_002813007.1	identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479
YP_002813008.1	identified by match to protein family HMM PF01207
YP_002813009.1	identified by glimmer; putative
YP_002813010.1	identified by match to protein family HMM PF07308
YP_002813011.1	identified by match to protein family HMM PF01863
YP_002813013.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_002813015.1	identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM TIGR00931
YP_002813016.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_002813018.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR03140
YP_002813019.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR03137
YP_002813020.1	related protein from Bacillus subtilis functions as methylribose kinase and functions in salvage pathway
YP_002813021.1	isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway
YP_002813022.1	catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate
YP_002813023.1	identified by match to protein family HMM PF01032
YP_002813024.1	identified by match to protein family HMM PF01032
YP_002813025.1	identified by match to protein family HMM PF01497
YP_002813026.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992
YP_002813027.1	identified by glimmer; putative
YP_002813028.1	identified by match to protein family HMM TIGR01764
YP_002813032.1	identified by glimmer; putative
YP_002813033.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813034.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002813035.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002813036.1	identified by glimmer; putative
YP_002813037.1	identified by match to protein family HMM PF04199
YP_002813040.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002813041.1	identified by match to protein family HMM PF00355; match to protein family HMM PF01266
YP_002813042.1	identified by match to protein family HMM PF00487
YP_002813043.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_002813044.1	identified by match to protein family HMM PF00497
YP_002813045.1	identified by match to protein family HMM PF00005
YP_002813046.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_002813047.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_002813048.1	identified by match to protein family HMM PF00128
YP_002813049.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003
YP_002813050.1	identified by match to protein family HMM PF03372
YP_002813051.1	identified by glimmer; putative
YP_002813052.1	identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062
YP_002813053.1	decatenates replicating daughter chromosomes
YP_002813054.1	catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP
YP_002813055.1	Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate
YP_002813056.1	functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB
YP_002813057.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_002813058.1	identified by match to protein family HMM PF01910
YP_002813059.1	identified by match to protein family HMM PF00528
YP_002813060.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002813061.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF09084
YP_002813062.1	identified by match to protein family HMM PF00005
YP_002813063.1	identified by match to protein family HMM PF00005
YP_002813064.1	identified by match to protein family HMM PF00041; match to protein family HMM PF00553; match to protein family HMM PF00704
YP_002813065.1	identified by match to protein family HMM PF09350
YP_002813067.1	identified by glimmer; putative
YP_002813068.1	identified by match to protein family HMM PF00440; match to protein family HMM PF08360
YP_002813069.1	identified by match to protein family HMM PF07690
YP_002813070.1	identified by match to protein family HMM PF01381
YP_002813072.1	identified by match to protein family HMM PF07690
YP_002813073.1	identified by match to protein family HMM PF01663
YP_002813075.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_002813076.1	identified by match to protein family HMM TIGR01167
YP_002813077.1	identified by match to protein family HMM PF00480
YP_002813078.1	identified by match to protein family HMM PF02342
YP_002813079.1	identified by match to protein family HMM PF02342
YP_002813080.1	identified by match to protein family HMM PF02342
YP_002813081.1	identified by match to protein family HMM PF03741
YP_002813082.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813083.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813084.1	identified by match to protein family HMM PF05816
YP_002813085.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_002813086.1	identified by match to protein family HMM PF06569
YP_002813087.1	identified by match to protein family HMM PF01451
YP_002813088.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813089.1	identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765
YP_002813090.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525
YP_002813091.1	identified by match to protein family HMM PF00892
YP_002813092.1	identified by match to protein family HMM PF07947
YP_002813093.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_002813094.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813095.1	identified by glimmer; putative
YP_002813096.1	identified by match to protein family HMM PF09335
YP_002813097.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813098.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813100.1	identified by match to protein family HMM PF01243
YP_002813101.1	identified by match to protein family HMM PF01699; match to protein family HMM TIGR00378; match to protein family HMM TIGR00846
YP_002813103.1	identified by match to protein family HMM PF04055; match to protein family HMM PF08756
YP_002813105.1	identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723
YP_002813106.1	identified by match to protein family HMM PF01522; match to protein family HMM TIGR02884
YP_002813107.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002813108.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00730
YP_002813109.1	identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479
YP_002813110.1	identified by match to protein family HMM PF00589
YP_002813113.1	identified by glimmer; putative
YP_002813114.1	identified by glimmer; putative
YP_002813115.1	identified by match to protein family HMM PF01381
YP_002813116.1	identified by match to protein family HMM PF01381
YP_002813117.1	identified by match to protein family HMM PF09669; match to protein family HMM TIGR02681
YP_002813119.1	identified by glimmer; putative
YP_002813120.1	identified by glimmer; putative
YP_002813121.1	identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446
YP_002813122.1	identified by match to protein family HMM PF01695
YP_002813123.1	identified by glimmer; putative
YP_002813124.1	identified by glimmer; putative
YP_002813125.1	identified by glimmer; putative
YP_002813126.1	identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937
YP_002813127.1	identified by glimmer; putative
YP_002813128.1	identified by glimmer; putative
YP_002813129.1	identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576
YP_002813132.1	catalyzes resistance to fosfomycin by the addition of a thiol cofactor
YP_002813135.1	identified by glimmer; putative
YP_002813136.1	identified by glimmer; putative
YP_002813137.1	identified by glimmer; putative
YP_002813138.1	identified by glimmer; putative
YP_002813139.1	identified by glimmer; putative
YP_002813140.1	identified by match to protein family HMM TIGR01637
YP_002813141.1	identified by match to protein family HMM PF00589
YP_002813143.1	identified by glimmer; putative
YP_002813145.1	identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558
YP_002813146.1	identified by match to protein family HMM PF03354
YP_002813147.1	identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537
YP_002813148.1	identified by match to protein family HMM PF00574
YP_002813149.1	identified by match to protein family HMM PF05065
YP_002813152.1	identified by glimmer; putative
YP_002813153.1	identified by match to protein family HMM TIGR01725
YP_002813155.1	identified by match to protein family HMM TIGR01603
YP_002813157.1	identified by glimmer; putative
YP_002813158.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01760
YP_002813159.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002813160.1	identified by match to protein family HMM TIGR01633
YP_002813161.1	identified by match to protein family HMM TIGR01665
YP_002813164.1	identified by match to protein family HMM PF00589
YP_002813165.1	identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593
YP_002813166.1	identified by match to protein family HMM PF01510
YP_002813168.1	identified by glimmer; putative
YP_002813169.1	identified by match to protein family HMM PF01381
YP_002813170.1	identified by glimmer; putative
YP_002813171.1	identified by glimmer; putative
YP_002813172.1	identified by match to protein family HMM PF01580
YP_002813173.1	identified by glimmer; putative
YP_002813175.1	identified by match to protein family HMM PF02620
YP_002813176.1	some L32 proteins have zinc finger motifs consisting of CXXC while others do not
YP_002813177.1	identified by match to protein family HMM PF00249; match to protein family HMM TIGR02894
YP_002813178.1	identified by match to protein family HMM PF00583
YP_002813179.1	ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis
YP_002813181.1	identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006
YP_002813182.1	identified by match to protein family HMM PF04977; match to protein family HMM TIGR02209
YP_002813183.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793
YP_002813184.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214
YP_002813185.1	involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate
YP_002813186.1	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
YP_002813187.1	UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation
YP_002813188.1	identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615
YP_002813189.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_002813190.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_002813191.1	identified by match to protein family HMM PF03799; match to protein family HMM PF08478
YP_002813192.1	identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174
YP_002813193.1	GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function
YP_002813194.1	identified by match to protein family HMM PF03419; match to protein family HMM TIGR02854
YP_002813195.1	sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation
YP_002813196.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin
YP_002813197.1	identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888
YP_002813198.1	identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726
YP_002813199.1	identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044
YP_002813200.1	identified by match to protein family HMM PF04472
YP_002813201.1	identified by match to protein family HMM PF02325
YP_002813202.1	identified by match to protein family HMM PF01479
YP_002813203.1	identified by match to protein family HMM PF05103; match to protein family HMM TIGR03544
YP_002813204.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme
YP_002813206.1	lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis
YP_002813207.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01479
YP_002813208.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005
YP_002813209.1	regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity
YP_002813210.1	identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801
YP_002813211.1	catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis
YP_002813212.1	catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis
YP_002813213.1	catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers
YP_002813214.1	four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity
YP_002813215.1	responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+)
YP_002813216.1	catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits
YP_002813217.1	type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase
YP_002813218.1	involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_002813219.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002813220.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813224.1	identified by glimmer; putative
YP_002813225.1	identified by match to protein family HMM PF00557; match to protein family HMM PF01321
YP_002813226.1	identified by match to protein family HMM PF05670; match to protein family HMM PF05833
YP_002813227.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494
YP_002813228.1	identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255
YP_002813229.1	identified by match to protein family HMM PF04025
YP_002813230.1	Essential for recycling GMP and indirectly, cGMP
YP_002813231.1	Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits
YP_002813232.1	catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine
YP_002813233.1	binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity
YP_002813234.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_002813235.1	modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth
YP_002813236.1	identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563
YP_002813237.1	23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance
YP_002813238.1	identified by match to protein family HMM PF00481
YP_002813239.1	identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714
YP_002813240.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_002813241.1	catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate
YP_002813242.1	identified by match to protein family HMM PF04263; match to protein family HMM PF04265; match to protein family HMM TIGR01378
YP_002813243.1	required for 70S ribosome assembly
YP_002813244.1	identified by match to protein family HMM PF03780
YP_002813245.1	identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599
YP_002813246.1	catalyzes branch migration in Holliday junction intermediates
YP_002813247.1	negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria
YP_002813248.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY
YP_002813249.1	identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128
YP_002813250.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002813251.1	carries the fatty acid chain in fatty acid biosynthesis
YP_002813252.1	cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity
YP_002813253.1	identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168
YP_002813254.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064
YP_002813255.1	identified by match to protein family HMM PF04297; match to protein family HMM PF08281
YP_002813256.1	identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959
YP_002813257.1	binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity
YP_002813259.1	Essential for efficient processing of 16S rRNA
YP_002813260.1	methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA
YP_002813261.1	this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site
YP_002813262.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_002813263.1	essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc)
YP_002813264.1	RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids
YP_002813265.1	catalyzes the interconversion of succinyl-CoA and succinate
YP_002813266.1	Catalyzes the only substrate-level phosphorylation in the TCA cycle
YP_002813267.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02481
YP_002813268.1	catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
YP_002813269.1	TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine
YP_002813270.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_002813271.1	heat shock protein involved in degradation of misfolded proteins
YP_002813272.1	heat shock protein involved in degradation of misfolded proteins
YP_002813273.1	CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
YP_002813274.1	one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit
YP_002813275.1	EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu
YP_002813276.1	Catalyzes the phosphorylation of UMP to UDP
YP_002813277.1	Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs
YP_002813278.1	catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate
YP_002813279.1	identified by match to protein family HMM PF01148
YP_002813280.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_002813281.1	identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054
YP_002813282.1	catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro)
YP_002813283.1	catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity
YP_002813284.1	in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins
YP_002813285.1	modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination
YP_002813286.1	identified by match to protein family HMM PF04296
YP_002813287.1	identified by match to protein family HMM PF01248
YP_002813288.1	Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
YP_002813289.1	identified by match to protein family HMM PF04456
YP_002813290.1	associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock
YP_002813291.1	catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs
YP_002813292.1	catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities
YP_002813293.1	primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence
YP_002813294.1	identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM TIGR03591
YP_002813295.1	identified by match to protein family HMM PF01522; match to protein family HMM TIGR02873
YP_002813296.1	identified by match to protein family HMM PF00675; match to protein family HMM PF05193
YP_002813297.1	identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888
YP_002813298.1	catalyzes the synthesis of dipicolinic acid from dihydroxydipicolinic acid; plays a role in spore heat resistance
YP_002813299.1	involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme
YP_002813300.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_002813301.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive
YP_002813302.1	catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis
YP_002813303.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649
YP_002813304.1	identified by match to protein family HMM PF00574
YP_002813306.1	identified by match to protein family HMM PF01580; match to protein family HMM PF09397
YP_002813307.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_002813308.1	identified by match to protein family HMM PF02608
YP_002813309.1	identified by match to protein family HMM PF00005
YP_002813310.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002813311.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF02653
YP_002813312.1	identified by match to protein family HMM PF02653
YP_002813313.1	identified by match to protein family HMM PF05193
YP_002813314.1	identified by match to protein family HMM PF00675; match to protein family HMM PF05193
YP_002813315.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002813319.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560
YP_002813320.1	identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00177; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200
YP_002813321.1	identified by match to protein family HMM PF00154; match to protein family HMM TIGR02012
YP_002813322.1	identified by match to protein family HMM PF00154
YP_002813323.1	protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP
YP_002813324.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282
YP_002813325.1	identified by match to protein family HMM PF04232
YP_002813326.1	identified by match to protein family HMM PF01244
YP_002813327.1	identified by match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02780
YP_002813328.1	catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin
YP_002813329.1	catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A)
YP_002813332.1	This protein performs the mismatch recognition step during the DNA repair process
YP_002813333.1	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
YP_002813334.1	identified by match to protein family HMM PF00005
YP_002813337.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002813338.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002813339.1	identified by match to protein family HMM PF02275
YP_002813342.1	identified by match to protein family HMM PF00884
YP_002813344.1	identified by match to protein family HMM PF01476; match to protein family HMM PF07486
YP_002813345.1	identified by match to protein family HMM PF00082; match to protein family HMM PF04151
YP_002813346.1	identified by glimmer; putative
YP_002813347.1	identified by match to protein family HMM PF00388
YP_002813348.1	identified by glimmer; putative
YP_002813349.1	identified by match to protein family HMM PF02585
YP_002813350.1	identified by match to protein family HMM PF00561
YP_002813351.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_002813352.1	increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation; inhibited by the antiholin-like proteins lrgAB
YP_002813353.1	identified by match to protein family HMM PF04172
YP_002813357.1	identified by glimmer; putative
YP_002813358.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_002813359.1	identified by match to protein family HMM PF00903
YP_002813360.1	identified by match to protein family HMM PF00561
YP_002813361.1	identified by match to protein family HMM PF00300
YP_002813362.1	identified by glimmer; putative
YP_002813363.1	identified by glimmer; putative
YP_002813364.1	identified by match to protein family HMM PF02588
YP_002813365.1	catalyzes the release of the N-terminal amino acid from a tripeptide
YP_002813366.1	identified by match to protein family HMM PF00730; match to protein family HMM PF07934
YP_002813367.1	identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589
YP_002813368.1	identified by match to protein family HMM PF00165; match to protein family HMM PF02805
YP_002813369.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633
YP_002813370.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813371.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01497
YP_002813372.1	identified by match to protein family HMM PF01032
YP_002813373.1	identified by match to protein family HMM PF01032
YP_002813374.1	identified by match to protein family HMM PF00005
YP_002813375.1	identified by match to protein family HMM PF00756
YP_002813377.1	identified by match to protein family HMM PF02583
YP_002813378.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00403; match to protein family HMM TIGR00003
YP_002813379.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525
YP_002813380.1	identified by match to protein family HMM PF00216
YP_002813381.1	identified by match to protein family HMM PF01226; match to protein family HMM TIGR00790
YP_002813382.1	identified by match to protein family HMM PF00149
YP_002813383.1	identified by glimmer; putative
YP_002813384.1	identified by match to protein family HMM PF00704
YP_002813385.1	identified by match to protein family HMM PF00324; match to protein family HMM PF03845; match to protein family HMM TIGR01773
YP_002813386.1	identified by glimmer; putative
YP_002813388.1	identified by match to protein family HMM PF04238
YP_002813389.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813390.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00465
YP_002813391.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220
YP_002813392.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168
YP_002813393.1	identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427
YP_002813394.1	identified by match to protein family HMM PF06347; match to protein family HMM PF06725; match to protein family HMM PF08239
YP_002813395.1	identified by glimmer; putative
YP_002813396.1	IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity
YP_002813397.1	Stimulates the elongation of poly(A) tails
YP_002813398.1	identified by match to protein family HMM PF01391
YP_002813399.1	identified by match to protein family HMM PF02899
YP_002813400.1	identified by match to protein family HMM PF00004; match to protein family HMM TIGR02881
YP_002813401.1	identified by match to protein family HMM PF03458
YP_002813402.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01926; match to protein family HMM TIGR03156
YP_002813403.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813404.1	identified by match to protein family HMM PF01053; match to protein family HMM PF06838
YP_002813405.1	identified by match to protein family HMM PF00376
YP_002813406.1	identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653
YP_002813407.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00589
YP_002813408.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813409.1	identified by glimmer; putative
YP_002813410.1	identified by match to protein family HMM PF06114
YP_002813413.1	identified by match to protein family HMM PF09669; match to protein family HMM TIGR02681
YP_002813415.1	identified by glimmer; putative
YP_002813417.1	identified by glimmer; putative
YP_002813418.1	identified by match to protein family HMM PF05565
YP_002813419.1	identified by match to protein family HMM PF06378
YP_002813420.1	identified by glimmer; putative
YP_002813421.1	identified by match to protein family HMM PF09524; match to protein family HMM TIGR02220
YP_002813423.1	identified by glimmer; putative
YP_002813424.1	identified by glimmer; putative
YP_002813425.1	identified by glimmer; putative
YP_002813426.1	identified by match to protein family HMM PF08761
YP_002813427.1	identified by match to protein family HMM PF00145
YP_002813428.1	identified by match to protein family HMM PF02511; match to protein family HMM TIGR02170
YP_002813429.1	identified by glimmer; putative
YP_002813430.1	identified by glimmer; putative
YP_002813431.1	identified by glimmer; putative
YP_002813434.1	identified by glimmer; putative
YP_002813435.1	identified by glimmer; putative
YP_002813436.1	identified by glimmer; putative
YP_002813437.1	identified by match to protein family HMM PF02450
YP_002813438.1	identified by glimmer; putative
YP_002813439.1	Positive regulatory protein that acts at the late promoter PL
YP_002813441.1	identified by match to protein family HMM PF01381
YP_002813442.1	identified by match to protein family HMM PF01844
YP_002813443.1	identified by match to protein family HMM PF03819
YP_002813445.1	identified by glimmer; putative
YP_002813447.1	identified by glimmer; putative
YP_002813448.1	identified by match to protein family HMM PF03681
YP_002813449.1	identified by glimmer; putative
YP_002813450.1	identified by glimmer; putative
YP_002813451.1	identified by glimmer; putative
YP_002813453.1	identified by match to protein family HMM PF03354
YP_002813454.1	identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537
YP_002813455.1	identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543
YP_002813457.1	identified by glimmer; putative
YP_002813458.1	identified by match to protein family HMM TIGR01560
YP_002813459.1	identified by match to protein family HMM TIGR01563
YP_002813462.1	identified by match to protein family HMM TIGR01603
YP_002813465.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002813466.1	identified by match to protein family HMM PF05017
YP_002813467.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01633
YP_002813468.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813469.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM TIGR01665
YP_002813470.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002813472.1	identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593
YP_002813473.1	identified by match to protein family HMM PF01510; match to protein family HMM PF08239
YP_002813474.1	identified by glimmer; putative
YP_002813475.1	identified by glimmer; putative
YP_002813477.1	identified by glimmer; putative
YP_002813481.1	identified by glimmer; putative
YP_002813482.1	identified by glimmer; putative
YP_002813483.1	identified by match to protein family HMM PF03551
YP_002813484.1	identified by match to protein family HMM PF08006
YP_002813486.1	Represses a number of genes involved in the response to DNA damage
YP_002813487.1	identified by match to protein family HMM PF00239
YP_002813488.1	identified by match to protein family HMM PF05979
YP_002813489.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02872
YP_002813490.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00149
YP_002813491.1	identified by match to protein family HMM TIGR01098
YP_002813492.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR02315
YP_002813493.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097
YP_002813494.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097
YP_002813495.1	identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766
YP_002813496.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_002813498.1	identified by match to protein family HMM PF03672
YP_002813499.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_002813500.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_002813502.1	identified by glimmer; putative
YP_002813503.1	identified by match to protein family HMM PF00395; match to protein family HMM PF01510
YP_002813504.1	identified by glimmer; putative
YP_002813505.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01925
YP_002813506.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813507.1	identified by glimmer; putative
YP_002813508.1	identified by match to protein family HMM PF00293
YP_002813509.1	identified by match to protein family HMM PF04172
YP_002813510.1	increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation; inhibited by the antiholin-like proteins lrgAB
YP_002813511.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002813513.1	identified by match to protein family HMM PF02683
YP_002813514.1	identified by match to protein family HMM PF07301
YP_002813515.1	identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451
YP_002813519.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01451
YP_002813520.1	identified by glimmer; putative
YP_002813522.1	identified by glimmer; putative
YP_002813524.1	identified by match to protein family HMM PF01965
YP_002813525.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002813526.1	regulates expression of hut operon by antitermination mechanism; forms a homohexamer; binds both magnesium and L-histidine and then binds RNA sequences within the terminator region and destabilizes the terminator structure
YP_002813527.1	catalyzes the degradation of histidine to urocanate and ammmonia
YP_002813528.1	catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism
YP_002813529.1	catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway
YP_002813530.1	catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate
YP_002813531.1	identified by match to protein family HMM PF02559
YP_002813532.1	identified by match to protein family HMM PF00724
YP_002813533.1	identified by match to protein family HMM PF01645
YP_002813534.1	identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121
YP_002813535.1	identified by match to protein family HMM PF00903
YP_002813536.1	identified by match to protein family HMM PF02230
YP_002813537.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_002813538.1	identified by match to protein family HMM PF00903
YP_002813539.1	identified by match to protein family HMM PF02588
YP_002813540.1	identified by glimmer; putative
YP_002813541.1	identified by match to protein family HMM PF01510
YP_002813543.1	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis
YP_002813544.1	identified by match to protein family HMM PF00395
YP_002813545.1	identified by match to protein family HMM PF05532
YP_002813546.1	identified by glimmer; putative
YP_002813548.1	identified by match to protein family HMM PF00501
YP_002813549.1	identified by match to protein family HMM PF02632
YP_002813550.1	activates fatty acids by binding to coenzyme A
YP_002813551.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_002813552.1	identified by glimmer; putative
YP_002813553.1	identified by match to protein family HMM PF00293
YP_002813554.1	identified by match to protein family HMM PF02272; match to protein family HMM PF07973
YP_002813558.1	SASP P; found in forespore compartment
YP_002813560.1	identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764
YP_002813561.1	SASP O; found in forespore compartment
YP_002813562.1	Catalyzes the conversion of citrate to isocitrate
YP_002813563.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_002813564.1	identified by glimmer; putative
YP_002813565.1	identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534
YP_002813566.1	identified by glimmer; putative
YP_002813567.1	3'-5' exonuclease of DNA polymerase III
YP_002813569.1	SASP N; found in forespore compartment
YP_002813570.1	identified by match to protein family HMM TIGR03090
YP_002813571.1	identified by match to protein family HMM PF00704; match to protein family HMM PF01476
YP_002813572.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051
YP_002813573.1	identified by match to protein family HMM PF01521
YP_002813574.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX
YP_002813575.1	Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates
YP_002813576.1	identified by match to protein family HMM TIGR02491
YP_002813577.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002813578.1	identified by match to protein family HMM PF00089
YP_002813579.1	identified by match to protein family HMM PF02629
YP_002813580.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_002813581.1	decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling
YP_002813582.1	identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447
YP_002813583.1	identified by match to protein family HMM PF00440
YP_002813584.1	identified by match to protein family HMM PF00005
YP_002813585.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813586.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813587.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002813588.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002813589.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_002813590.1	identified by glimmer; putative
YP_002813591.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_002813592.1	involved in the transport of C4-dicarboxylates across the membrane
YP_002813593.1	identified by match to protein family HMM PF00496
YP_002813594.1	identified by glimmer; putative
YP_002813595.1	identified by match to protein family HMM PF00496
YP_002813596.1	identified by match to protein family HMM PF00496
YP_002813597.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002813599.1	identified by glimmer; putative
YP_002813600.1	identified by glimmer; putative
YP_002813601.1	identified by glimmer; putative
YP_002813602.1	identified by glimmer; putative
YP_002813603.1	identified by glimmer; putative
YP_002813604.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_002813605.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_002813606.1	identified by match to protein family HMM PF03323
YP_002813607.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591
YP_002813608.1	identified by match to protein family HMM PF07849
YP_002813610.1	involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth
YP_002813611.1	identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666
YP_002813612.1	identified by match to protein family HMM PF01226
YP_002813613.1	catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways
YP_002813614.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_002813615.1	identified by match to protein family HMM PF02391
YP_002813616.1	identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682
YP_002813617.1	identified by match to protein family HMM PF01883
YP_002813619.1	identified by glimmer; putative
YP_002813620.1	identified by match to protein family HMM PF06961
YP_002813621.1	identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688
YP_002813622.1	identified by match to protein family HMM PF02681
YP_002813623.1	identified by match to protein family HMM PF00432; match to protein family HMM TIGR01787
YP_002813624.1	identified by glimmer; putative
YP_002813625.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002813626.1	identified by match to protein family HMM PF00171
YP_002813627.1	identified by match to protein family HMM PF06196
YP_002813628.1	mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase
YP_002813629.1	identified by match to protein family HMM PF01156
YP_002813630.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813631.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002813632.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813633.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00206
YP_002813634.1	identified by match to protein family HMM PF00583
YP_002813635.1	identified by match to protein family HMM PF00106
YP_002813636.1	identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451
YP_002813638.1	identified by match to protein family HMM PF04266
YP_002813639.1	identified by match to protein family HMM PF00293
YP_002813641.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_002813643.1	identified by match to protein family HMM PF00313
YP_002813644.1	has 3'-5' exonuclease activity
YP_002813646.1	identified by glimmer; putative
YP_002813649.1	identified by match to protein family HMM PF04294
YP_002813650.1	identified by match to protein family HMM PF00903
YP_002813651.1	identified by match to protein family HMM PF00583
YP_002813652.1	identified by match to protein family HMM PF02308
YP_002813654.1	identified by match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453
YP_002813655.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_002813656.1	identified by match to protein family HMM PF00535; match to protein family HMM PF08241
YP_002813657.1	identified by match to protein family HMM PF01041
YP_002813658.1	identified by match to protein family HMM PF00132
YP_002813659.1	identified by match to protein family HMM TIGR01444
YP_002813660.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00534
YP_002813662.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913
YP_002813663.1	identified by match to protein family HMM PF01758
YP_002813665.1	identified by match to protein family HMM PF04229
YP_002813666.1	identified by match to protein family HMM PF04299
YP_002813667.1	identified by glimmer; putative
YP_002813668.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002813669.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002813670.1	identified by match to protein family HMM PF02696
YP_002813671.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002813672.1	identified by match to protein family HMM PF01022
YP_002813673.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01494
YP_002813675.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813676.1	identified by match to protein family HMM PF03009
YP_002813677.1	identified by match to protein family HMM PF02698
YP_002813678.1	identified by glimmer; putative
YP_002813679.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002813680.1	identified by match to protein family HMM PF07690
YP_002813682.1	identified by match to protein family HMM PF00144
YP_002813683.1	identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181
YP_002813684.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00797
YP_002813685.1	converts 1,4-alpha-D-glucans to maltodextrin
YP_002813686.1	identified by glimmer; putative
YP_002813687.1	identified by glimmer; putative
YP_002813688.1	identified by match to protein family HMM PF00488
YP_002813689.1	identified by match to protein family HMM PF00583
YP_002813690.1	identified by match to protein family HMM PF00300
YP_002813691.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002813692.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002813695.1	identified by match to protein family HMM PF05163
YP_002813698.1	identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654
YP_002813699.1	identified by match to protein family HMM PF05675
YP_002813700.1	identified by match to protein family HMM PF01032
YP_002813701.1	identified by match to protein family HMM PF01032
YP_002813702.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813703.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01497
YP_002813704.1	identified by match to protein family HMM PF00583
YP_002813705.1	identified by glimmer; putative
YP_002813706.1	identified by glimmer; putative
YP_002813707.1	identified by glimmer; putative
YP_002813708.1	identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600
YP_002813709.1	identified by match to protein family HMM PF08830
YP_002813710.1	identified by match to protein family HMM PF02585
YP_002813711.1	identified by glimmer; putative
YP_002813712.1	identified by glimmer; putative
YP_002813713.1	identified by glimmer; putative
YP_002813716.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710
YP_002813717.1	identified by match to protein family HMM PF00324
YP_002813718.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02817
YP_002813719.1	identified by match to protein family HMM PF00753
YP_002813720.1	identified by glimmer; putative
YP_002813721.1	identified by match to protein family HMM PF04657
YP_002813722.1	identified by match to protein family HMM PF04657
YP_002813723.1	identified by match to protein family HMM PF00027
YP_002813725.1	identified by match to protein family HMM PF03486
YP_002813726.1	identified by glimmer; putative
YP_002813727.1	identified by match to protein family HMM PF00144
YP_002813728.1	identified by glimmer; putative
YP_002813731.1	identified by match to protein family HMM PF03819
YP_002813732.1	identified by match to protein family HMM PF01183
YP_002813733.1	identified by match to protein family HMM PF00753
YP_002813734.1	identified by glimmer; putative
YP_002813735.1	catalyzes the reduction of hydroxylamine to ammonia and water
YP_002813736.1	identified by match to protein family HMM PF03551
YP_002813737.1	identified by match to protein family HMM PF06304
YP_002813738.1	identified by match to protein family HMM PF00005
YP_002813739.1	identified by match to protein family HMM PF01061
YP_002813740.1	identified by match to protein family HMM PF05656
YP_002813741.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08220; match to protein family HMM PF08279
YP_002813742.1	identified by match to protein family HMM PF06445
YP_002813743.1	identified by glimmer; putative
YP_002813744.1	identified by match to protein family HMM PF00440
YP_002813745.1	identified by match to protein family HMM PF02517
YP_002813746.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00535
YP_002813747.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002813748.1	Heat shock-induced
YP_002813750.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813751.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00535; match to protein family HMM PF01522
YP_002813752.1	identified by match to protein family HMM PF01022
YP_002813753.1	identified by match to protein family HMM PF00023
YP_002813754.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813755.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813756.1	identified by match to protein family HMM PF01638
YP_002813757.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02525
YP_002813758.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813759.1	identified by match to protein family HMM PF00501
YP_002813760.1	identified by match to protein family HMM PF00583
YP_002813761.1	identified by match to protein family HMM PF00106
YP_002813762.1	identified by match to protein family HMM PF00583
YP_002813763.1	identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654
YP_002813764.1	identified by glimmer; putative
YP_002813767.1	identified by match to protein family HMM PF00753
YP_002813769.1	identified by match to protein family HMM PF00248
YP_002813770.1	identified by match to protein family HMM PF01638
YP_002813771.1	identified by match to protein family HMM PF01638
YP_002813772.1	identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002813773.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01408
YP_002813774.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF02894
YP_002813775.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813776.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07702
YP_002813777.1	identified by match to protein family HMM PF01638
YP_002813778.1	the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress
YP_002813780.1	identified by glimmer; putative
YP_002813781.1	identified by match to protein family HMM PF02082
YP_002813782.1	identified by glimmer; putative
YP_002813783.1	identified by match to protein family HMM PF01490; match to protein family HMM PF03222
YP_002813784.1	identified by match to protein family HMM PF00903
YP_002813785.1	identified by match to protein family HMM PF03928
YP_002813786.1	identified by match to protein family HMM PF01361
YP_002813787.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002813788.1	identified by match to protein family HMM PF00248
YP_002813789.1	identified by match to protein family HMM PF02012
YP_002813791.1	identified by match to protein family HMM PF03272
YP_002813792.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF07504
YP_002813793.1	identified by match to protein family HMM PF00106
YP_002813794.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002813795.1	identified by glimmer; putative
YP_002813796.1	identified by match to protein family HMM PF00296; match to protein family HMM TIGR03571
YP_002813797.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002813798.1	identified by match to protein family HMM PF00479
YP_002813799.1	catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate
YP_002813800.1	catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase
YP_002813801.1	similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate
YP_002813802.1	similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity
YP_002813803.1	identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791
YP_002813804.1	identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01314
YP_002813806.1	identified by match to protein family HMM PF06906
YP_002813807.1	identified by match to protein family HMM PF00805
YP_002813808.1	identified by match to protein family HMM PF00892
YP_002813810.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_002813813.1	identified by glimmer; putative
YP_002813815.1	identified by match to protein family HMM PF00515
YP_002813816.1	identified by match to protein family HMM PF07690
YP_002813817.1	identified by match to protein family HMM PF07336
YP_002813818.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002813819.1	identified by glimmer; putative
YP_002813820.1	identified by match to protein family HMM PF00583
YP_002813821.1	identified by match to protein family HMM PF04226
YP_002813822.1	identified by match to protein family HMM PF01594
YP_002813823.1	catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate
YP_002813824.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002813825.1	identified by glimmer; putative
YP_002813826.1	identified by match to protein family HMM PF00005
YP_002813827.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02687
YP_002813828.1	identified by match to protein family HMM PF00132
YP_002813829.1	identified by match to protein family HMM PF07690
YP_002813830.1	identified by match to protein family HMM PF00480
YP_002813831.1	identified by match to protein family HMM PF00903
YP_002813833.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00293
YP_002813837.1	identified by match to protein family HMM PF07853
YP_002813838.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254
YP_002813840.1	identified by match to protein family HMM PF01381
YP_002813841.1	identified by glimmer; putative
YP_002813842.1	identified by glimmer; putative
YP_002813843.1	identified by match to protein family HMM PF00005
YP_002813845.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002813847.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_002813849.1	identified by match to protein family HMM PF00881
YP_002813850.1	identified by match to protein family HMM PF01638
YP_002813851.1	identified by glimmer; putative
YP_002813853.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_002813854.1	identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011
YP_002813855.1	identified by match to protein family HMM PF02660; match to protein family HMM TIGR00023
YP_002813856.1	identified by match to protein family HMM PF01381
YP_002813858.1	identified by glimmer; putative
YP_002813859.1	identified by match to protein family HMM PF04231
YP_002813860.1	identified by match to protein family HMM PF03553; match to protein family HMM PF03606
YP_002813861.1	regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity
YP_002813862.1	identified by match to protein family HMM TIGR01167
YP_002813864.1	identified by match to protein family HMM PF02361
YP_002813865.1	identified by match to protein family HMM PF00005
YP_002813868.1	identified by glimmer; putative
YP_002813870.1	identified by match to protein family HMM PF04434
YP_002813871.1	identified by match to protein family HMM PF02525; match to protein family HMM PF03358
YP_002813872.1	identified by glimmer; putative
YP_002813873.1	identified by match to protein family HMM PF02667
YP_002813874.1	identified by match to protein family HMM PF01289
YP_002813875.1	identified by match to protein family HMM PF00440
YP_002813876.1	identified by match to protein family HMM PF00893
YP_002813879.1	identified by glimmer; putative
YP_002813881.1	identified by match to protein family HMM PF00005
YP_002813883.1	identified by glimmer; putative
YP_002813884.1	identified by match to protein family HMM PF00144
YP_002813885.1	identified by match to protein family HMM PF07690
YP_002813886.1	identified by match to protein family HMM PF01047
YP_002813887.1	identified by match to protein family HMM PF00561
YP_002813888.1	identified by match to protein family HMM PF07690
YP_002813891.1	identified by match to protein family HMM PF00903
YP_002813892.1	identified by match to protein family HMM PF00395
YP_002813893.1	identified by glimmer; putative
YP_002813894.1	identified by match to protein family HMM PF06352
YP_002813895.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002813896.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00395; match to protein family HMM PF08239
YP_002813897.1	identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446
YP_002813898.1	identified by match to protein family HMM PF01804
YP_002813899.1	identified by glimmer; putative
YP_002813900.1	identified by match to protein family HMM PF00165
YP_002813901.1	identified by match to protein family HMM PF07883
YP_002813904.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in B. subtilis this protein is activated in response to cell wall antibiotics, ethanol, heat, acid, and superoxide stress
YP_002813906.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813907.1	catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine
YP_002813908.1	identified by match to protein family HMM PF00389; match to protein family HMM PF01842; match to protein family HMM PF02826
YP_002813909.1	identified by match to protein family HMM PF06245
YP_002813910.1	identified by glimmer; putative
YP_002813911.1	identified by match to protein family HMM PF00324; match to protein family HMM PF01490; match to protein family HMM PF03845
YP_002813912.1	identified by match to protein family HMM PF01037
YP_002813913.1	identified by match to protein family HMM PF00857
YP_002813914.1	identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124
YP_002813915.1	identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143
YP_002813916.1	catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde
YP_002813917.1	identified by glimmer; putative
YP_002813918.1	identified by match to protein family HMM PF03315; match to protein family HMM TIGR00719
YP_002813919.1	identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718
YP_002813920.1	identified by match to protein family HMM PF01490; match to protein family HMM PF03222
YP_002813921.1	identified by match to protein family HMM PF01022
YP_002813922.1	identified by match to protein family HMM PF00440
YP_002813923.1	identified by match to protein family HMM PF07690
YP_002813924.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002813925.1	identified by match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453
YP_002813926.1	identified by glimmer; putative
YP_002813927.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_002813928.1	identified by match to protein family HMM PF00583
YP_002813929.1	identified by match to protein family HMM PF02517
YP_002813930.1	identified by glimmer; putative
YP_002813931.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02203; match to protein family HMM PF02743
YP_002813932.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_002813933.1	identified by glimmer; putative
YP_002813934.1	identified by match to protein family HMM PF08863
YP_002813935.1	identified by match to protein family HMM PF00817
YP_002813936.1	identified by glimmer; putative
YP_002813938.1	identified by glimmer; putative
YP_002813940.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_002813941.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01041; match to protein family HMM PF01212
YP_002813942.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813943.1	identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR01484
YP_002813944.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_002813945.1	identified by match to protein family HMM PF07690
YP_002813946.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002813947.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002813948.1	identified by match to protein family HMM PF02016
YP_002813949.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_002813950.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002813951.1	identified by match to protein family HMM PF02754
YP_002813952.1	identified by match to protein family HMM PF02589; match to protein family HMM TIGR00273
YP_002813953.1	identified by match to protein family HMM PF02589
YP_002813954.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002813955.1	identified by match to protein family HMM PF02588
YP_002813956.1	identified by match to protein family HMM PF04299
YP_002813957.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813958.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00583
YP_002813959.1	identified by match to protein family HMM PF01047
YP_002813960.1	identified by match to protein family HMM PF02588
YP_002813961.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002813962.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002813963.1	identified by match to protein family HMM PF07690
YP_002813964.1	identified by match to protein family HMM PF01022
YP_002813965.1	identified by match to protein family HMM PF02687
YP_002813966.1	identified by match to protein family HMM PF00005
YP_002813967.1	identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167
YP_002813969.1	identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027
YP_002813970.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_002813971.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02655
YP_002813972.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_002813973.1	identified by match to protein family HMM PF00753
YP_002813974.1	identified by match to protein family HMM TIGR02304
YP_002813976.1	identified by match to protein family HMM PF01381
YP_002813977.1	identified by glimmer; putative
YP_002813978.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00144
YP_002813979.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002813980.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002813981.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002813982.1	catalyzes the formation of pyruvate from D-cysteine
YP_002813983.1	identified by glimmer; putative
YP_002813986.1	identified by glimmer; putative
YP_002813987.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002813988.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002813992.1	identified by glimmer; putative
YP_002813993.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_002813994.1	identified by glimmer; putative
YP_002813995.1	identified by match to protein family HMM PF00067; match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667
YP_002813996.1	identified by match to protein family HMM PF01047; match to protein family HMM PF03965
YP_002813997.1	identified by match to protein family HMM PF07681
YP_002813998.1	identified by match to protein family HMM PF08803
YP_002814000.1	identified by match to protein family HMM PF00144
YP_002814001.1	identified by match to protein family HMM PF00324; match to protein family HMM PF03845
YP_002814002.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814005.1	identified by glimmer; putative
YP_002814006.1	identified by match to protein family HMM PF00903
YP_002814008.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_002814009.1	identified by match to protein family HMM PF01037
YP_002814010.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659
YP_002814011.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814012.1	identified by match to protein family HMM PF00012
YP_002814013.1	identified by match to protein family HMM PF00226; match to protein family HMM PF00515; match to protein family HMM PF07719
YP_002814014.1	identified by glimmer; putative
YP_002814015.1	identified by match to protein family HMM PF01022
YP_002814016.1	identified by match to protein family HMM PF00903
YP_002814017.1	identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832
YP_002814018.1	catalyzes the reduction of arsenate to arsenite; also can dephosphorylate tyrosine phosphorylated proteins, aryl phosphates, and acyl phosphates
YP_002814021.1	identified by glimmer; putative
YP_002814022.1	identified by match to protein family HMM PF01965
YP_002814023.1	identified by match to protein family HMM PF00005
YP_002814024.1	identified by match to protein family HMM PF00950
YP_002814025.1	identified by match to protein family HMM PF01297
YP_002814026.1	identified by match to protein family HMM PF00561
YP_002814027.1	catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate
YP_002814028.1	identified by match to protein family HMM PF00583
YP_002814030.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_002814032.1	identified by match to protein family HMM PF00484
YP_002814033.1	identified by match to protein family HMM PF00875; match to protein family HMM PF03441
YP_002814034.1	identified by match to protein family HMM PF03073
YP_002814036.1	identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655
YP_002814040.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01544
YP_002814041.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814042.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002814043.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002814044.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF07969
YP_002814046.1	identified by match to protein family HMM PF00857
YP_002814047.1	identified by match to protein family HMM PF00857
YP_002814048.1	identified by match to protein family HMM PF00561
YP_002814049.1	identified by match to protein family HMM PF00199
YP_002814050.1	identified by match to protein family HMM PF00149; match to protein family HMM PF02872
YP_002814051.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002814052.1	identified by glimmer; putative
YP_002814055.1	identified by match to protein family HMM PF03600
YP_002814056.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_002814057.1	catalyzes the formation of glutamate from glutamine
YP_002814058.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814059.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02518
YP_002814060.1	identified by match to protein family HMM PF00072; match to protein family HMM PF08664
YP_002814061.1	identified by glimmer; putative
YP_002814062.1	identified by glimmer; putative
YP_002814063.1	identified by match to protein family HMM PF03323
YP_002814064.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_002814065.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814066.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05504
YP_002814068.1	identified by match to protein family HMM PF00390; match to protein family HMM PF03949
YP_002814070.1	identified by glimmer; putative
YP_002814071.1	identified by match to protein family HMM PF03807
YP_002814072.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_002814073.1	identified by match to protein family HMM PF00324; match to protein family HMM PF03845
YP_002814074.1	identified by match to protein family HMM PF01541
YP_002814075.1	identified by glimmer; putative
YP_002814076.1	identified by match to protein family HMM PF01381
YP_002814077.1	identified by match to protein family HMM PF00710; match to protein family HMM TIGR00519
YP_002814078.1	catalyzes the formation of fumarate from aspartate
YP_002814079.1	identified by match to protein family HMM PF05067
YP_002814081.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002814082.1	identified by match to protein family HMM PF00269
YP_002814085.1	identified by match to protein family HMM PF00269
YP_002814086.1	identified by glimmer; putative
YP_002814087.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814088.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814089.1	identified by match to protein family HMM PF01810
YP_002814090.1	identified by match to protein family HMM PF08892
YP_002814091.1	identified by match to protein family HMM PF07875
YP_002814093.1	identified by match to protein family HMM PF09678
YP_002814094.1	identified by match to protein family HMM PF00753
YP_002814095.1	identified by glimmer; putative
YP_002814096.1	identified by match to protein family HMM PF00391; match to protein family HMM PF01326
YP_002814097.1	identified by match to protein family HMM PF00440
YP_002814098.1	identified by match to protein family HMM PF01061
YP_002814100.1	identified by match to protein family HMM PF00583
YP_002814101.1	identified by match to protein family HMM PF01636
YP_002814102.1	identified by match to protein family HMM PF07670
YP_002814103.1	identified by glimmer; putative
YP_002814104.1	identified by match to protein family HMM PF00583
YP_002814105.1	identified by match to protein family HMM PF02698
YP_002814106.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028
YP_002814107.1	identified by glimmer; putative
YP_002814108.1	identified by match to protein family HMM PF01022
YP_002814109.1	identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867
YP_002814110.1	identified by match to protein family HMM PF03932
YP_002814111.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_002814112.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_002814113.1	identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370
YP_002814114.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724
YP_002814115.1	identified by match to protein family HMM PF03746
YP_002814116.1	identified by match to protein family HMM PF06149
YP_002814117.1	identified by match to protein family HMM PF06166
YP_002814118.1	identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766
YP_002814119.1	catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline
YP_002814120.1	Modulates the activities of several enzymes which are inactive in their acetylated form
YP_002814121.1	identified by glimmer; putative
YP_002814122.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_002814123.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_002814124.1	identified by match to protein family HMM PF04989
YP_002814125.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00293
YP_002814127.1	identified by glimmer; putative
YP_002814128.1	identified by match to protein family HMM PF08241
YP_002814132.1	identified by match to protein family HMM PF00324
YP_002814133.1	identified by match to protein family HMM PF00583
YP_002814134.1	identified by match to protein family HMM PF01925
YP_002814136.1	identified by match to protein family HMM PF01636
YP_002814137.1	identified by match to protein family HMM PF00149
YP_002814138.1	phosphorylates nucleosides or dinucleosides to make UMP or CMP as part of the pyrimidine salvage pathway
YP_002814141.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002814142.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002814144.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002814146.1	identified by match to protein family HMM PF02639
YP_002814147.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_002814148.1	identified by match to protein family HMM PF00892
YP_002814149.1	identified by match to protein family HMM PF00293
YP_002814150.1	identified by glimmer; putative
YP_002814151.1	identified by match to protein family HMM PF00583
YP_002814152.1	identified by match to protein family HMM PF00165; match to protein family HMM PF06445
YP_002814153.1	identified by match to protein family HMM PF00144
YP_002814154.1	identified by glimmer; putative
YP_002814155.1	identified by match to protein family HMM PF02687
YP_002814156.1	identified by match to protein family HMM PF02687
YP_002814157.1	identified by match to protein family HMM PF00005
YP_002814158.1	identified by match to protein family HMM PF01370
YP_002814159.1	identified by match to protein family HMM PF00392
YP_002814160.1	identified by match to protein family HMM PF00005
YP_002814162.1	identified by glimmer; putative
YP_002814163.1	identified by glimmer; putative
YP_002814164.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814165.1	identified by match to protein family HMM PF00293
YP_002814167.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM PF08477; match to protein family HMM TIGR00231
YP_002814168.1	identified by match to protein family HMM PF01047
YP_002814169.1	identified by match to protein family HMM PF00881
YP_002814170.1	identified by match to protein family HMM PF03992
YP_002814171.1	identified by match to protein family HMM PF00004; match to protein family HMM PF07726; match to protein family HMM PF07728
YP_002814172.1	identified by match to protein family HMM PF01882
YP_002814173.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814174.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814175.1	identified by glimmer; putative
YP_002814176.1	identified by match to protein family HMM PF00144
YP_002814177.1	identified by match to protein family HMM PF01979
YP_002814179.1	identified by match to protein family HMM PF00199
YP_002814180.1	identified by match to protein family HMM PF00202
YP_002814181.1	identified by match to protein family HMM PF02012
YP_002814182.1	identified by match to protein family HMM PF00535
YP_002814183.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814184.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00535
YP_002814185.1	identified by glimmer; putative
YP_002814186.1	identified by match to protein family HMM PF00535
YP_002814187.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002814188.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814189.1	identified by match to protein family HMM PF01882
YP_002814190.1	identified by match to protein family HMM PF07726; match to protein family HMM PF07728
YP_002814191.1	identified by match to protein family HMM PF03551
YP_002814193.1	identified by glimmer; putative
YP_002814195.1	identified by match to protein family HMM PF00903
YP_002814196.1	identified by match to protein family HMM PF00583
YP_002814197.1	Phosphoprylates nucleosides or dinucleosides to make UMP or CMP as part of the pyrimidine salvage pathway
YP_002814198.1	identified by match to protein family HMM PF04397
YP_002814205.1	identified by match to protein family HMM PF00245
YP_002814206.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00487
YP_002814207.1	identified by match to protein family HMM PF01139
YP_002814208.1	identified by match to protein family HMM PF00324
YP_002814209.1	identified by match to protein family HMM PF01614; match to protein family HMM PF09339
YP_002814210.1	identified by match to protein family HMM PF01546
YP_002814211.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_002814212.1	catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis
YP_002814213.1	Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway
YP_002814214.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM TIGR00804
YP_002814216.1	identified by match to protein family HMM PF01022
YP_002814217.1	identified by match to protein family HMM PF07690
YP_002814218.1	identified by match to protein family HMM PF03992
YP_002814221.1	identified by match to protein family HMM PF00583
YP_002814222.1	identified by match to protein family HMM PF01791
YP_002814223.1	identified by match to protein family HMM PF07883
YP_002814224.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814225.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00370
YP_002814226.1	identified by match to protein family HMM PF04198
YP_002814227.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005
YP_002814228.1	identified by match to protein family HMM PF02653
YP_002814229.1	identified by glimmer; putative
YP_002814230.1	identified by match to protein family HMM PF02653
YP_002814232.1	malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate
YP_002814234.1	identified by glimmer; putative
YP_002814235.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814236.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_002814237.1	identified by glimmer; putative
YP_002814238.1	identified by match to protein family HMM PF06347; match to protein family HMM PF06725; match to protein family HMM PF08239
YP_002814240.1	identified by glimmer; putative
YP_002814241.1	identified by match to protein family HMM PF00583
YP_002814242.1	identified by match to protein family HMM PF00857
YP_002814244.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814245.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814246.1	catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate
YP_002814247.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_002814248.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_002814249.1	catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate
YP_002814250.1	catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
YP_002814251.1	identified by match to protein family HMM PF00583
YP_002814252.1	identified by match to protein family HMM PF00440
YP_002814253.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF03176
YP_002814254.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002814255.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002814256.1	identified by glimmer; putative
YP_002814257.1	identified by match to protein family HMM PF00005
YP_002814258.1	identified by match to protein family HMM PF00884
YP_002814259.1	identified by match to protein family HMM PF03741
YP_002814260.1	identified by glimmer; putative
YP_002814261.1	identified by match to protein family HMM PF01522
YP_002814264.1	identified by match to protein family HMM PF06352
YP_002814265.1	identified by match to protein family HMM PF01909
YP_002814266.1	identified by match to protein family HMM PF00583
YP_002814267.1	identified by match to protein family HMM PF00583
YP_002814270.1	identified by match to protein family HMM PF00583
YP_002814271.1	identified by glimmer; putative
YP_002814273.1	identified by match to protein family HMM PF03738
YP_002814275.1	identified by match to protein family HMM PF02522
YP_002814276.1	identified by match to protein family HMM PF04127
YP_002814277.1	identified by match to protein family HMM PF07719
YP_002814279.1	identified by match to protein family HMM PF00293
YP_002814281.1	identified by match to protein family HMM PF00440
YP_002814282.1	identified by glimmer; putative
YP_002814283.1	identified by match to protein family HMM PF00005
YP_002814284.1	identified by match to protein family HMM PF04069; match to protein family HMM PF09084; match to protein family HMM TIGR01728
YP_002814285.1	identified by match to protein family HMM PF00528
YP_002814286.1	catalyzes the release of sulfite from alkanesulfonates
YP_002814287.1	identified by glimmer; putative
YP_002814288.1	identified by match to protein family HMM PF01594
YP_002814289.1	identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413
YP_002814290.1	identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413
YP_002814291.1	identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413
YP_002814292.1	identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413
YP_002814293.1	identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413
YP_002814294.1	identified by glimmer; putative
YP_002814295.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00392
YP_002814296.1	identified by match to protein family HMM PF00005
YP_002814299.1	identified by match to protein family HMM PF02517
YP_002814300.1	catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type II pantothenate kinases are not regulated by feedback inhibition by coenzyme A
YP_002814301.1	identified by match to protein family HMM PF07977
YP_002814302.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_002814304.1	identified by glimmer; putative
YP_002814305.1	identified by match to protein family HMM PF07690
YP_002814306.1	identified by glimmer; putative
YP_002814307.1	identified by glimmer; putative
YP_002814308.1	identified by glimmer; putative
YP_002814309.1	identified by glimmer; putative
YP_002814310.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002814311.1	identified by glimmer; putative
YP_002814312.1	identified by match to protein family HMM PF01156
YP_002814313.1	identified by match to protein family HMM PF04226
YP_002814314.1	identified by glimmer; putative
YP_002814315.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814318.1	identified by match to protein family HMM PF07690
YP_002814319.1	identified by match to protein family HMM PF00496
YP_002814321.1	identified by match to protein family HMM PF04519
YP_002814323.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_002814324.1	identified by glimmer; putative
YP_002814326.1	identified by match to protein family HMM PF00583
YP_002814327.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_002814329.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814330.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01432
YP_002814331.1	identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696
YP_002814332.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01636
YP_002814333.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_002814335.1	identified by match to protein family HMM PF00583
YP_002814336.1	identified by glimmer; putative
YP_002814337.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002814338.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002814339.1	catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue
YP_002814340.1	identified by glimmer; putative
YP_002814341.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002814342.1	identified by glimmer; putative
YP_002814344.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814345.1	identified by glimmer; putative
YP_002814346.1	identified by match to protein family HMM PF04977
YP_002814347.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746
YP_002814348.1	identified by match to protein family HMM PF00877
YP_002814349.1	identified by match to protein family HMM PF00496
YP_002814350.1	identified by match to protein family HMM PF00583
YP_002814351.1	identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918
YP_002814352.1	identified by glimmer; putative
YP_002814353.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814354.1	identified by match to protein family HMM PF09335
YP_002814355.1	identified by match to protein family HMM PF08876
YP_002814356.1	identified by glimmer; putative
YP_002814358.1	identified by match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992
YP_002814359.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00111
YP_002814360.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002814361.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229
YP_002814362.1	identified by match to protein family HMM PF01266
YP_002814363.1	identified by match to protein family HMM PF05544
YP_002814364.1	identified by glimmer; putative
YP_002814365.1	identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674
YP_002814366.1	identified by match to protein family HMM PF00171
YP_002814367.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_002814368.1	identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778
YP_002814369.1	identified by match to protein family HMM PF00583
YP_002814370.1	identified by match to protein family HMM PF03067
YP_002814371.1	catalyzes the hydrolysis of pyrophosphate to phosphate
YP_002814372.1	identified by match to protein family HMM PF01432; match to protein family HMM TIGR02289
YP_002814374.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative
YP_002814376.1	identified by glimmer; putative
YP_002814378.1	identified by glimmer; putative
YP_002814379.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389
YP_002814380.1	identified by match to protein family HMM PF06094
YP_002814381.1	identified by match to protein family HMM PF08241
YP_002814382.1	identified by match to protein family HMM PF02517
YP_002814384.1	identified by match to protein family HMM PF06108
YP_002814385.1	identified by match to protein family HMM PF03551
YP_002814387.1	identified by match to protein family HMM PF00583
YP_002814388.1	identified by glimmer; putative
YP_002814389.1	identified by glimmer; putative
YP_002814390.1	identified by match to protein family HMM PF00583
YP_002814391.1	identified by match to protein family HMM PF01183
YP_002814393.1	identified by match to protein family HMM PF00395; match to protein family HMM PF00753
YP_002814394.1	identified by match to protein family HMM PF00583
YP_002814395.1	identified by match to protein family HMM PF04237
YP_002814396.1	identified by match to protein family HMM PF08874
YP_002814400.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814401.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814402.1	In Listeria monocytogenes this protein binds a specific sites on DNA, influencing the topology and transcription; regulates flaA, proU and ompC; is osmoregulated
YP_002814403.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03067
YP_002814404.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00041; match to protein family HMM PF02839
YP_002814405.1	identified by match to protein family HMM PF00583
YP_002814406.1	Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway
YP_002814408.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_002814409.1	identified by match to protein family HMM PF00574; match to protein family HMM TIGR00493
YP_002814410.1	identified by match to protein family HMM PF04069
YP_002814411.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186
YP_002814412.1	identified by match to protein family HMM PF00528
YP_002814413.1	identified by glimmer; putative
YP_002814414.1	identified by glimmer; putative
YP_002814415.1	identified by match to protein family HMM PF00293
YP_002814417.1	identified by match to protein family HMM PF04229
YP_002814418.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_002814420.1	identified by glimmer; putative
YP_002814421.1	identified by match to protein family HMM PF00676
YP_002814422.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_002814423.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_002814424.1	E3 component of acetoin cleaving system; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_002814425.1	identified by glimmer; putative
YP_002814426.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative
YP_002814427.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative
YP_002814428.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_002814429.1	identified by match to protein family HMM PF03486; match to protein family HMM PF07992
YP_002814430.1	identified by match to protein family HMM PF03848; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002814432.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279
YP_002814433.1	identified by match to protein family HMM PF00583
YP_002814434.1	identified by glimmer; putative
YP_002814435.1	identified by glimmer; putative
YP_002814436.1	identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728
YP_002814437.1	identified by glimmer; putative
YP_002814438.1	identified by glimmer; putative
YP_002814440.1	identified by match to protein family HMM PF00797
YP_002814441.1	identified by match to protein family HMM PF00293
YP_002814442.1	identified by match to protein family HMM PF00440
YP_002814443.1	identified by match to protein family HMM PF00266; match to protein family HMM TIGR01814
YP_002814444.1	identified by match to protein family HMM PF04199; match to protein family HMM TIGR03035
YP_002814445.1	identified by match to protein family HMM PF03301; match to protein family HMM TIGR03036
YP_002814446.1	identified by match to protein family HMM PF00144
YP_002814448.1	identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869
YP_002814449.1	identified by match to protein family HMM PF03413; match to protein family HMM TIGR02889
YP_002814450.1	identified by match to protein family HMM PF09580; match to protein family HMM TIGR02898
YP_002814452.1	identified by match to protein family HMM PF00583
YP_002814453.1	identified by match to protein family HMM PF06081
YP_002814454.1	identified by match to protein family HMM PF08002
YP_002814455.1	identified by glimmer; putative
YP_002814456.1	identified by glimmer; putative
YP_002814457.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814458.1	identified by match to protein family HMM PF00561
YP_002814459.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_002814460.1	identified by match to protein family HMM PF00892
YP_002814461.1	identified by glimmer; putative
YP_002814462.1	forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase
YP_002814463.1	identified by match to protein family HMM PF06445
YP_002814464.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in B. subtilis has been shown to regulate cell envelope modification and may effect antibiotic resistance
YP_002814466.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504
YP_002814467.1	identified by glimmer; putative
YP_002814468.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02806; match to protein family HMM PF02922; match to protein family HMM PF03714; match to protein family HMM TIGR02104
YP_002814469.1	identified by match to protein family HMM TIGR03605
YP_002814470.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08415; match to protein family HMM TIGR01733
YP_002814471.1	identified by match to protein family HMM PF00282; match to protein family HMM PF01212
YP_002814472.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07859
YP_002814473.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814474.1	identified by glimmer; putative
YP_002814475.1	identified by glimmer; putative
YP_002814476.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549
YP_002814478.1	identified by match to protein family HMM PF08877
YP_002814479.1	identified by match to protein family HMM PF00797
YP_002814481.1	identified by match to protein family HMM PF01266
YP_002814482.1	identified by match to protein family HMM PF00293
YP_002814483.1	identified by glimmer; putative
YP_002814485.1	identified by glimmer; putative
YP_002814486.1	identified by glimmer; putative
YP_002814490.1	identified by match to protein family HMM PF01541
YP_002814491.1	identified by glimmer; putative
YP_002814492.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_002814494.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00583
YP_002814496.1	identified by match to protein family HMM PF00583
YP_002814497.1	identified by match to protein family HMM PF08000
YP_002814498.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814500.1	identified by glimmer; putative
YP_002814501.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00756
YP_002814502.1	identified by match to protein family HMM PF09350
YP_002814503.1	identified by match to protein family HMM PF09234
YP_002814504.1	identified by match to protein family HMM PF01042
YP_002814505.1	identified by glimmer; putative
YP_002814508.1	identified by match to protein family HMM PF00561
YP_002814509.1	identified by glimmer; putative
YP_002814510.1	identified by match to protein family HMM PF00293
YP_002814511.1	binds the polymerase to DNA and acts as a sliding clamp
YP_002814512.1	identified by match to protein family HMM PF00293
YP_002814513.1	identified by match to protein family HMM PF03596
YP_002814514.1	identified by match to protein family HMM PF07690
YP_002814515.1	identified by glimmer; putative
YP_002814516.1	identified by match to protein family HMM PF00144
YP_002814517.1	identified by glimmer; putative
YP_002814518.1	identified by match to protein family HMM PF00293
YP_002814519.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00583
YP_002814520.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002814521.1	identified by match to protein family HMM PF01270
YP_002814522.1	identified by match to protein family HMM PF00892
YP_002814523.1	identified by glimmer; putative
YP_002814524.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00392
YP_002814525.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00155
YP_002814527.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814528.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03009
YP_002814529.1	identified by match to protein family HMM PF00583
YP_002814530.1	identified by glimmer; putative
YP_002814531.1	identified by match to protein family HMM PF07690
YP_002814532.1	identified by match to protein family HMM PF03966; match to protein family HMM PF08241
YP_002814533.1	identified by match to protein family HMM PF00144
YP_002814534.1	identified by glimmer; putative
YP_002814535.1	identified by match to protein family HMM PF06161
YP_002814536.1	identified by match to protein family HMM PF01965
YP_002814537.1	identified by match to protein family HMM PF08279
YP_002814538.1	identified by match to protein family HMM PF01965
YP_002814539.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_002814541.1	identified by match to protein family HMM PF00583
YP_002814542.1	identified by match to protein family HMM PF00144
YP_002814543.1	identified by match to protein family HMM PF07690
YP_002814544.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793
YP_002814545.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002814546.1	identified by match to protein family HMM PF04229
YP_002814548.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07694
YP_002814549.1	identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732
YP_002814550.1	identified by match to protein family HMM PF02361
YP_002814551.1	identified by match to protein family HMM PF00005
YP_002814552.1	identified by match to protein family HMM PF07155
YP_002814553.1	identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035
YP_002814554.1	identified by match to protein family HMM PF00201; match to protein family HMM PF04101; match to protein family HMM TIGR01426
YP_002814555.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_002814556.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_002814557.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002814558.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_002814559.1	identified by match to protein family HMM PF05995
YP_002814560.1	identified by match to protein family HMM PF00067
YP_002814561.1	identified by match to protein family HMM PF03551
YP_002814562.1	identified by match to protein family HMM PF07561
YP_002814563.1	identified by match to protein family HMM PF00132
YP_002814564.1	identified by match to protein family HMM PF07690
YP_002814565.1	identified by match to protein family HMM PF00067
YP_002814566.1	identified by glimmer; putative
YP_002814567.1	identified by match to protein family HMM PF08874
YP_002814568.1	identified by glimmer; putative
YP_002814569.1	identified by glimmer; putative
YP_002814571.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814572.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814573.1	identified by glimmer; putative
YP_002814574.1	identified by glimmer; putative
YP_002814576.1	identified by glimmer; putative
YP_002814577.1	identified by glimmer; putative
YP_002814579.1	identified by glimmer; putative
YP_002814580.1	identified by glimmer; putative
YP_002814582.1	identified by glimmer; putative
YP_002814583.1	identified by match to protein family HMM PF03070
YP_002814584.1	D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli
YP_002814585.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_002814586.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_002814587.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814588.1	identified by glimmer; putative
YP_002814590.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814591.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02687
YP_002814592.1	identified by match to protein family HMM PF00005
YP_002814593.1	identified by glimmer; putative
YP_002814594.1	identified by match to protein family HMM PF00583
YP_002814595.1	identified by match to protein family HMM PF00005
YP_002814597.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02518
YP_002814598.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814599.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002814600.1	identified by match to protein family HMM PF03069
YP_002814601.1	identified by match to protein family HMM PF07486
YP_002814603.1	identified by match to protein family HMM PF03848; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002814604.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814605.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01085
YP_002814606.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002814607.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002814608.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002814609.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814610.1	identified by glimmer; putative
YP_002814611.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_002814613.1	identified by match to protein family HMM PF01432; match to protein family HMM TIGR02289
YP_002814614.1	identified by match to protein family HMM PF00165
YP_002814615.1	identified by match to protein family HMM PF01636
YP_002814616.1	identified by glimmer; putative
YP_002814618.1	identified by match to protein family HMM PF00293
YP_002814619.1	identified by match to protein family HMM PF07690
YP_002814620.1	identified by match to protein family HMM PF00376; match to protein family HMM PF06445
YP_002814621.1	identified by match to protein family HMM PF00144
YP_002814623.1	identified by match to protein family HMM PF03551
YP_002814624.1	identified by match to protein family HMM PF00005
YP_002814625.1	identified by match to protein family HMM PF08327
YP_002814628.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814629.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02868; match to protein family HMM PF07523
YP_002814630.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01447; match to protein family HMM PF03413
YP_002814631.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814632.1	identified by glimmer; putative
YP_002814633.1	identified by match to protein family HMM PF00583
YP_002814635.1	Enables the cleavage of the glycosidic bond in S-adenosylhomocysteine
YP_002814636.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814637.1	identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488
YP_002814638.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002814639.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002814640.1	identified by match to protein family HMM PF00768
YP_002814641.1	identified by match to protein family HMM PF05163
YP_002814643.1	identified by glimmer; putative
YP_002814644.1	identified by match to protein family HMM PF00583
YP_002814645.1	identified by glimmer; putative
YP_002814646.1	identified by match to protein family HMM PF00501
YP_002814647.1	identified by match to protein family HMM PF01039
YP_002814648.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_002814649.1	catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA
YP_002814650.1	composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_002814651.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_002814652.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_002814653.1	identified by match to protein family HMM PF04463; match to protein family HMM PF08349
YP_002814654.1	identified by glimmer; putative
YP_002814655.1	identified by match to protein family HMM PF00440
YP_002814656.1	identified by match to protein family HMM PF01061
YP_002814657.1	identified by match to protein family HMM PF00005
YP_002814658.1	identified by glimmer; putative
YP_002814660.1	identified by match to protein family HMM PF00581; match to protein family HMM PF00753
YP_002814661.1	identified by match to protein family HMM PF07992
YP_002814662.1	identified by match to protein family HMM PF09346
YP_002814663.1	identified by glimmer; putative
YP_002814664.1	identified by match to protein family HMM PF00583
YP_002814665.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_002814666.1	identified by glimmer; putative
YP_002814667.1	identified by match to protein family HMM PF00005
YP_002814668.1	identified by match to protein family HMM PF00440
YP_002814669.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF07968
YP_002814670.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814671.1	identified by match to protein family HMM PF00395; match to protein family HMM PF01520
YP_002814672.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814673.1	identified by match to protein family HMM PF02557
YP_002814674.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814675.1	identified by match to protein family HMM PF01381
YP_002814678.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02872
YP_002814679.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00149
YP_002814680.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814681.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814682.1	identified by glimmer; putative
YP_002814683.1	identified by match to protein family HMM PF06845
YP_002814684.1	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate
YP_002814685.1	identified by match to protein family HMM PF01261
YP_002814686.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776
YP_002814687.1	identified by glimmer; putative
YP_002814688.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722
YP_002814689.1	identified by match to protein family HMM PF00294
YP_002814690.1	identified by match to protein family HMM PF01408; match to protein family HMM PF02894
YP_002814691.1	identified by match to protein family HMM PF07690
YP_002814692.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_002814693.1	identified by match to protein family HMM PF01569
YP_002814694.1	identified by match to protein family HMM PF00144
YP_002814695.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_002814696.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814697.1	identified by glimmer; putative
YP_002814698.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_002814699.1	identified by glimmer; putative
YP_002814700.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_002814701.1	identified by match to protein family HMM PF00657
YP_002814702.1	identified by glimmer; putative
YP_002814703.1	identified by glimmer; putative
YP_002814704.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893
YP_002814706.1	identified by glimmer; putative
YP_002814707.1	identified by glimmer; putative
YP_002814708.1	identified by glimmer; putative
YP_002814709.1	identified by glimmer; putative
YP_002814710.1	identified by glimmer; putative
YP_002814711.1	identified by glimmer; putative
YP_002814712.1	2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate
YP_002814713.1	identified by match to protein family HMM PF01047
YP_002814714.1	identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776
YP_002814715.1	identified by match to protein family HMM PF08241
YP_002814716.1	identified by match to protein family HMM PF00903; match to protein family HMM PF06983
YP_002814717.1	identified by match to protein family HMM PF03848; match to protein family HMM PF05724; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002814718.1	identified by match to protein family HMM PF00005
YP_002814719.1	identified by match to protein family HMM PF02687
YP_002814720.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814721.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814722.1	identified by match to protein family HMM PF00440
YP_002814724.1	identified by glimmer; putative
YP_002814725.1	identified by glimmer; putative
YP_002814726.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_002814727.1	identified by glimmer; putative
YP_002814728.1	identified by glimmer; putative
YP_002814729.1	identified by match to protein family HMM PF00753
YP_002814731.1	catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic
YP_002814732.1	identified by match to protein family HMM PF00266
YP_002814733.1	involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX
YP_002814734.1	identified by match to protein family HMM PF01869
YP_002814735.1	catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling
YP_002814737.1	identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410
YP_002814738.1	identified by match to protein family HMM PF02302
YP_002814739.1	identified by glimmer; putative
YP_002814740.1	identified by match to protein family HMM PF02638
YP_002814741.1	identified by glimmer; putative
YP_002814742.1	identified by match to protein family HMM PF05816
YP_002814743.1	identified by match to protein family HMM PF01596
YP_002814744.1	identified by glimmer; putative
YP_002814745.1	identified by glimmer; putative
YP_002814746.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_002814747.1	identified by match to protein family HMM PF01266; match to protein family HMM PF01593
YP_002814748.1	identified by glimmer; putative
YP_002814750.1	identified by match to protein family HMM PF01391
YP_002814751.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002814752.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_002814753.1	identified by match to protein family HMM PF01810
YP_002814754.1	identified by match to protein family HMM PF01520
YP_002814755.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_002814756.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_002814757.1	identified by match to protein family HMM PF07081
YP_002814758.1	identified by match to protein family HMM PF00583
YP_002814759.1	identified by match to protein family HMM PF03473; match to protein family HMM PF03475
YP_002814760.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002814761.1	identified by glimmer; putative
YP_002814762.1	identified by match to protein family HMM PF03417
YP_002814763.1	catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde
YP_002814764.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002814765.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002814766.1	identified by glimmer; putative
YP_002814767.1	identified by glimmer; putative
YP_002814768.1	identified by glimmer; putative
YP_002814769.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814770.1	identified by glimmer; putative
YP_002814771.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_002814774.1	identified by match to protein family HMM PF02517
YP_002814775.1	identified by match to protein family HMM PF00313
YP_002814777.1	identified by match to protein family HMM PF00583
YP_002814778.1	identified by glimmer; putative
YP_002814779.1	catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX
YP_002814780.1	identified by match to protein family HMM PF00561
YP_002814781.1	identified by match to protein family HMM PF09388
YP_002814782.1	identified by glimmer; putative
YP_002814783.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_002814784.1	identified by match to protein family HMM PF00892; match to protein family HMM PF08449
YP_002814785.1	identified by match to protein family HMM PF00583
YP_002814786.1	identified by match to protein family HMM PF00583; match to protein family HMM PF00805
YP_002814787.1	identified by match to protein family HMM PF00583
YP_002814788.1	identified by match to protein family HMM PF00302
YP_002814789.1	identified by glimmer; putative
YP_002814790.1	identified by match to protein family HMM PF03176
YP_002814791.1	identified by match to protein family HMM PF00440
YP_002814792.1	identified by match to protein family HMM PF00753
YP_002814793.1	identified by match to protein family HMM PF00583
YP_002814795.1	identified by glimmer; putative
YP_002814796.1	identified by match to protein family HMM PF01156
YP_002814797.1	identified by match to protein family HMM PF00753
YP_002814800.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002814801.1	identified by match to protein family HMM PF02535
YP_002814802.1	identified by match to protein family HMM PF00528
YP_002814803.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00528
YP_002814804.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814805.1	identified by match to protein family HMM PF07690
YP_002814806.1	identified by match to protein family HMM PF00561
YP_002814807.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814808.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02687
YP_002814809.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814810.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00005
YP_002814811.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); Bacillus have two copies of the threonyl-tRNA synthetase, threonine starvation induces both proteins
YP_002814812.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814813.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_002814815.1	identified by glimmer; putative
YP_002814816.1	identified by glimmer; putative
YP_002814817.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_002814818.1	identified by match to protein family HMM PF00082
YP_002814819.1	identified by match to protein family HMM PF05163
YP_002814821.1	identified by match to protein family HMM PF00216
YP_002814823.1	identified by match to protein family HMM PF01648
YP_002814824.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_002814825.1	identified by match to protein family HMM PF03621
YP_002814826.1	identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733
YP_002814827.1	identified by match to protein family HMM PF00550; match to protein family HMM PF00857
YP_002814828.1	identified by match to protein family HMM PF00501; match to protein family HMM TIGR02275
YP_002814829.1	synthesizes isochorismate from chorismate as part of the biosynthesis of the siderophore 2,3-dihydroxybenzoate; can also be used in menaquinone synthesis
YP_002814830.1	catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin
YP_002814831.1	identified by match to protein family HMM PF07690
YP_002814832.1	identified by glimmer; putative
YP_002814834.1	identified by match to protein family HMM PF01022
YP_002814835.1	identified by glimmer; putative
YP_002814836.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814837.1	identified by glimmer; putative
YP_002814838.1	identified by match to protein family HMM PF02463
YP_002814839.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619
YP_002814841.1	identified by glimmer; putative
YP_002814842.1	catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA
YP_002814843.1	identified by match to protein family HMM PF01810
YP_002814844.1	identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722
YP_002814845.1	identified by match to protein family HMM PF03446; match to protein family HMM PF03807
YP_002814846.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_002814848.1	identified by match to protein family HMM TIGR02317
YP_002814849.1	functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C
YP_002814850.1	forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle, glyoxylate cycle and respiration
YP_002814851.1	identified by match to protein family HMM PF01521
YP_002814852.1	identified by match to protein family HMM PF07690
YP_002814853.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_002814854.1	identified by match to protein family HMM PF01679
YP_002814855.1	identified by glimmer; putative
YP_002814857.1	identified by match to protein family HMM PF08863
YP_002814858.1	identified by glimmer; putative
YP_002814859.1	identified by glimmer; putative
YP_002814860.1	cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein
YP_002814861.1	identified by glimmer; putative
YP_002814862.1	identified by glimmer; putative
YP_002814864.1	identified by glimmer; putative
YP_002814867.1	identified by glimmer; putative
YP_002814868.1	identified by match to protein family HMM PF01042
YP_002814869.1	identified by glimmer; putative
YP_002814870.1	identified by glimmer; putative
YP_002814871.1	identified by glimmer; putative
YP_002814872.1	identified by match to protein family HMM PF01580
YP_002814873.1	identified by glimmer; putative
YP_002814874.1	identified by match to protein family HMM PF01381
YP_002814875.1	identified by match to protein family HMM PF04471
YP_002814876.1	identified by glimmer; putative
YP_002814877.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00395
YP_002814878.1	identified by match to protein family HMM PF06013
YP_002814879.1	identified by match to protein family HMM PF09346
YP_002814880.1	identified by match to protein family HMM PF00589
YP_002814882.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_002814883.1	identified by match to protein family HMM PF01569
YP_002814884.1	identified by match to protein family HMM PF07070
YP_002814886.1	identified by glimmer; putative
YP_002814888.1	identified by glimmer; putative
YP_002814890.1	identified by match to protein family HMM PF06855
YP_002814892.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238
YP_002814893.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_002814894.1	identified by match to protein family HMM PF00583
YP_002814895.1	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine
YP_002814896.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428
YP_002814897.1	identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429
YP_002814898.1	identified by match to protein family HMM PF00202
YP_002814899.1	identified by glimmer; putative
YP_002814901.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF09385
YP_002814902.1	identified by match to protein family HMM PF07997
YP_002814903.1	identified by match to protein family HMM PF00171
YP_002814904.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_002814905.1	remodeling and anchoring of the chromosome protein; in Bacillus subtilis this protein functions in polar chromosome segregation during sporulation; binds inverted sequence motifs called ram along the chromosome; condenses DNA via RacA-RacA interactions
YP_002814906.1	identified by glimmer; putative
YP_002814907.1	identified by glimmer; putative
YP_002814908.1	identified by match to protein family HMM PF07728
YP_002814910.1	identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905
YP_002814911.1	identified by match to protein family HMM PF00528; match to protein family HMM PF04069
YP_002814912.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01186
YP_002814913.1	identified by match to protein family HMM PF02698
YP_002814914.1	identified by match to protein family HMM PF07690
YP_002814915.1	identified by match to protein family HMM PF03358
YP_002814917.1	identified by match to protein family HMM PF00535
YP_002814918.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814919.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814920.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814921.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814922.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814923.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00144
YP_002814924.1	identified by match to protein family HMM PF00528
YP_002814925.1	identified by match to protein family HMM PF00528
YP_002814926.1	similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs
YP_002814927.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01380
YP_002814928.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814929.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281
YP_002814930.1	identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730
YP_002814931.1	identified by match to protein family HMM PF00924
YP_002814932.1	identified by match to protein family HMM PF00011
YP_002814933.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00293
YP_002814934.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00857
YP_002814935.1	identified by glimmer; putative
YP_002814937.1	identified by match to protein family HMM PF00881
YP_002814938.1	catalyzes the transamination of D-amino acids and their alpha-keto acids
YP_002814939.1	identified by match to protein family HMM PF01497
YP_002814941.1	identified by glimmer; putative
YP_002814942.1	identified by match to protein family HMM PF00583
YP_002814943.1	identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536
YP_002814944.1	identified by match to protein family HMM PF00011; match to protein family HMM PF04969
YP_002814945.1	identified by match to protein family HMM PF02630
YP_002814946.1	identified by match to protein family HMM PF00753
YP_002814947.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_002814949.1	identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945
YP_002814950.1	TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes
YP_002814951.1	identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065
YP_002814952.1	identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530
YP_002814953.1	FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds
YP_002814954.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223
YP_002814955.1	identified by match to protein family HMM PF00186
YP_002814956.1	ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived
YP_002814957.1	identified by match to protein family HMM PF00144
YP_002814958.1	identified by glimmer; putative
YP_002814959.1	identified by match to protein family HMM PF01636
YP_002814961.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549
YP_002814963.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814964.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814965.1	identified by match to protein family HMM PF00005
YP_002814966.1	identified by match to protein family HMM PF00583
YP_002814967.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814968.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814969.1	identified by match to protein family HMM PF00583
YP_002814970.1	identified by match to protein family HMM PF01980
YP_002814971.1	identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035
YP_002814972.1	identified by match to protein family HMM PF00465
YP_002814973.1	identified by match to protein family HMM PF03600
YP_002814974.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549
YP_002814976.1	identified by match to protein family HMM PF06042
YP_002814977.1	identified by match to protein family HMM PF00561
YP_002814978.1	identified by match to protein family HMM PF00209
YP_002814979.1	identified by match to protein family HMM PF03413
YP_002814980.1	identified by match to protein family HMM PF03413
YP_002814981.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002814982.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002814983.1	identified by match to protein family HMM PF00939
YP_002814984.1	identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045
YP_002814985.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814986.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002814987.1	identified by glimmer; putative
YP_002814988.1	identified by glimmer; putative
YP_002814989.1	identified by glimmer; putative
YP_002814990.1	identified by glimmer; putative
YP_002814991.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02371
YP_002814992.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01548
YP_002814993.1	identified by match to protein family HMM PF00239; match to protein family HMM PF07508
YP_002814994.1	identified by glimmer; putative
YP_002814995.1	identified by glimmer; putative
YP_002814998.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002814999.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815000.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815001.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00515
YP_002815002.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002815003.1	identified by match to protein family HMM PF06013
YP_002815004.1	identified by match to protein family HMM PF01580
YP_002815008.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_002815009.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01225; match to protein family HMM PF08245
YP_002815010.1	identified by glimmer; putative
YP_002815011.1	identified by match to protein family HMM PF03413; match to protein family HMM PF07504
YP_002815012.1	IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin)
YP_002815013.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_002815014.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002815015.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002815016.1	identified by glimmer; putative
YP_002815018.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_002815020.1	identified by match to protein family HMM PF06491
YP_002815021.1	identified by glimmer; putative
YP_002815022.1	identified by match to protein family HMM PF03130
YP_002815023.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002815024.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002815025.1	identified by match to protein family HMM PF00440
YP_002815026.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_002815027.1	identified by glimmer; putative
YP_002815028.1	identified by match to protein family HMM PF06539
YP_002815029.1	identified by match to protein family HMM PF00005
YP_002815030.1	identified by match to protein family HMM PF01966
YP_002815031.1	identified by glimmer; putative
YP_002815033.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815034.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815035.1	identified by glimmer; putative
YP_002815036.1	identified by match to protein family HMM PF04232
YP_002815037.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07819
YP_002815038.1	identified by match to protein family HMM PF00797
YP_002815039.1	identified by glimmer; putative
YP_002815040.1	identified by glimmer; putative
YP_002815041.1	identified by match to protein family HMM PF05901
YP_002815042.1	identified by glimmer; putative
YP_002815043.1	identified by match to protein family HMM PF01814; match to protein family HMM PF04405; match to protein family HMM TIGR03652
YP_002815044.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374
YP_002815045.1	identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378
YP_002815046.1	this protein contains the C-terminal section of uroporphyrinogen-III methyltransferase fused with uroporphyrinogen-III synthase; studies on Clostridium josui indicate that this protein has uroporphyrinogen-III methylase activity; functions in tetrapyrrole and heme biosynthesis
YP_002815047.1	identified by match to protein family HMM PF01903
YP_002815048.1	catalyzes the formation of siroheme from precorrin-2
YP_002815050.1	identified by match to protein family HMM PF03547
YP_002815051.1	identified by match to protein family HMM PF07690
YP_002815052.1	identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682
YP_002815053.1	identified by match to protein family HMM PF02391
YP_002815054.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_002815055.1	catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways
YP_002815056.1	identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666
YP_002815057.1	identified by match to protein family HMM PF00027; match to protein family HMM PF00325
YP_002815058.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002815059.1	identified by match to protein family HMM PF00005
YP_002815060.1	identified by match to protein family HMM PF00392
YP_002815061.1	identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351
YP_002815062.1	identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684
YP_002815063.1	identified by match to protein family HMM TIGR01660
YP_002815064.1	identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580
YP_002815065.1	identified by glimmer; putative
YP_002815067.1	identified by match to protein family HMM PF07726; match to protein family HMM PF07728
YP_002815068.1	identified by match to protein family HMM PF01882
YP_002815069.1	identified by match to protein family HMM PF01841
YP_002815070.1	identified by match to protein family HMM PF00255
YP_002815071.1	identified by glimmer; putative
YP_002815072.1	identified by match to protein family HMM PF00753
YP_002815073.1	identified by glimmer; putative
YP_002815074.1	identified by glimmer; putative
YP_002815075.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_002815076.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002815078.1	identified by match to protein family HMM PF00903
YP_002815080.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851
YP_002815082.1	catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate
YP_002815083.1	identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002815085.1	identified by glimmer; putative
YP_002815086.1	identified by glimmer; putative
YP_002815087.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815088.1	identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874
YP_002815089.1	identified by glimmer; putative
YP_002815090.1	identified by glimmer; putative
YP_002815092.1	identified by glimmer; putative
YP_002815093.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815094.1	identified by glimmer; putative
YP_002815095.1	identified by glimmer; putative
YP_002815097.1	identified by match to protein family HMM PF00583
YP_002815098.1	identified by glimmer; putative
YP_002815099.1	identified by match to protein family HMM PF00583
YP_002815100.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07853
YP_002815101.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815102.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815103.1	identified by match to protein family HMM PF00583
YP_002815104.1	identified by match to protein family HMM PF00392
YP_002815105.1	identified by match to protein family HMM PF02588
YP_002815106.1	identified by match to protein family HMM PF00201; match to protein family HMM PF04101; match to protein family HMM TIGR01426
YP_002815108.1	identified by match to protein family HMM PF00583
YP_002815109.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002815110.1	identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492
YP_002815111.1	identified by glimmer; putative
YP_002815112.1	identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_002815113.1	identified by match to protein family HMM PF00300
YP_002815114.1	identified by match to protein family HMM PF01145
YP_002815115.1	identified by match to protein family HMM PF01957
YP_002815116.1	identified by match to protein family HMM PF07690
YP_002815117.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_002815118.1	identified by match to protein family HMM PF00293
YP_002815119.1	identified by match to protein family HMM PF02557
YP_002815120.1	identified by match to protein family HMM PF00583
YP_002815121.1	identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867
YP_002815122.1	identified by glimmer; putative
YP_002815123.1	identified by match to protein family HMM PF07609
YP_002815124.1	identified by match to protein family HMM PF01588; match to protein family HMM TIGR02222
YP_002815125.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_002815126.1	identified by match to protein family HMM PF00571
YP_002815128.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471
YP_002815129.1	identified by match to protein family HMM PF04306
YP_002815130.1	identified by match to protein family HMM PF02254
YP_002815132.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF07875
YP_002815133.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002815134.1	identified by match to protein family HMM PF00614
YP_002815135.1	identified by match to protein family HMM PF03061
YP_002815136.1	identified by match to protein family HMM PF09323
YP_002815137.1	identified by match to protein family HMM PF03773
YP_002815138.1	identified by match to protein family HMM PF01544
YP_002815139.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023
YP_002815140.1	identified by match to protein family HMM PF09335
YP_002815141.1	identified by match to protein family HMM PF00293
YP_002815142.1	identified by match to protein family HMM PF08757
YP_002815143.1	identified by glimmer; putative
YP_002815144.1	identified by match to protein family HMM PF00300
YP_002815146.1	catalyzes resistance to fosfomycin by the addition of a thiol cofactor
YP_002815147.1	identified by match to protein family HMM PF00496
YP_002815148.1	identified by glimmer; putative
YP_002815149.1	identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589
YP_002815150.1	catalyzes the reduction of alpha, beta-unsaturated aldehydes and ketones; reduces the nitro group nitroester and nitroaromatic compounds
YP_002815151.1	identified by match to protein family HMM PF01370
YP_002815152.1	identified by glimmer; putative
YP_002815153.1	identified by match to protein family HMM PF01297
YP_002815154.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002815155.1	identified by glimmer; putative
YP_002815157.1	identified by glimmer; putative
YP_002815158.1	identified by glimmer; putative
YP_002815159.1	identified by glimmer; putative
YP_002815161.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by glimmer; putative
YP_002815162.1	identified by match to protein family HMM PF00583
YP_002815163.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683
YP_002815164.1	identified by match to protein family HMM PF00248
YP_002815165.1	identified by match to protein family HMM PF00583
YP_002815166.1	identified by match to protein family HMM PF01593
YP_002815167.1	identified by glimmer; putative
YP_002815168.1	identified by match to protein family HMM PF00296; match to protein family HMM TIGR03558
YP_002815169.1	identified by glimmer; putative
YP_002815170.1	identified by glimmer; putative
YP_002815171.1	identified by match to protein family HMM PF00210
YP_002815173.1	identified by glimmer; putative
YP_002815174.1	identified by glimmer; putative
YP_002815175.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_002815176.1	EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity
YP_002815180.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002815181.1	identified by match to protein family HMM PF00248
YP_002815182.1	identified by match to protein family HMM PF01022
YP_002815183.1	identified by match to protein family HMM PF00082
YP_002815184.1	identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439
YP_002815185.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815186.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02687
YP_002815187.1	identified by glimmer; putative
YP_002815188.1	catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers
YP_002815189.1	identified by match to protein family HMM PF00293
YP_002815190.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002815191.1	identified by match to protein family HMM PF01841
YP_002815192.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815193.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF09234
YP_002815194.1	identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732
YP_002815195.1	identified by match to protein family HMM PF01734
YP_002815196.1	identified by glimmer; putative
YP_002815197.1	identified by match to protein family HMM PF01810
YP_002815198.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815199.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815200.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815201.1	identified by match to protein family HMM PF00269
YP_002815202.1	identified by match to protein family HMM PF01261
YP_002815204.1	Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides
YP_002815205.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815206.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815207.1	identified by match to protein family HMM PF04183
YP_002815208.1	identified by match to protein family HMM PF04183
YP_002815209.1	identified by match to protein family HMM PF00583
YP_002815210.1	identified by match to protein family HMM PF02308
YP_002815212.1	identified by match to protein family HMM PF01522
YP_002815213.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002815214.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002815216.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_002815219.1	catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate
YP_002815220.1	catalyzes the formation of L-threonine from O-phospho-L-homoserine
YP_002815221.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_002815223.1	identified by glimmer; putative
YP_002815224.1	identified by match to protein family HMM PF00293
YP_002815225.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002815226.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002815227.1	identified by match to protein family HMM PF01522
YP_002815228.1	identified by match to protein family HMM PF04439
YP_002815229.1	identified by glimmer; putative
YP_002815230.1	Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002815232.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002815233.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002815234.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00005
YP_002815235.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002815236.1	identified by match to protein family HMM PF00561
YP_002815237.1	identified by match to protein family HMM PF00877; match to protein family HMM PF06347; match to protein family HMM PF08239
YP_002815238.1	identified by match to protein family HMM PF00881
YP_002815239.1	identified by match to protein family HMM PF00768
YP_002815240.1	identified by match to protein family HMM PF02016
YP_002815242.1	identified by glimmer; putative
YP_002815243.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02868
YP_002815244.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02857
YP_002815245.1	identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203
YP_002815246.1	identified by match to protein family HMM PF01654
YP_002815247.1	identified by match to protein family HMM PF00296
YP_002815248.1	identified by match to protein family HMM PF01047; match to protein family HMM PF03551
YP_002815249.1	identified by match to protein family HMM PF02627
YP_002815252.1	identified by match to protein family HMM PF00126
YP_002815253.1	identified by match to protein family HMM PF02653
YP_002815254.1	identified by match to protein family HMM PF02653
YP_002815255.1	identified by match to protein family HMM PF00005
YP_002815256.1	identified by match to protein family HMM PF00005
YP_002815257.1	identified by match to protein family HMM PF01094
YP_002815258.1	identified by match to protein family HMM PF08541; match to protein family HMM PF08545
YP_002815259.1	identified by match to protein family HMM PF01575
YP_002815260.1	activates fatty acids by binding to coenzyme A
YP_002815261.1	identified by match to protein family HMM PF00440
YP_002815262.1	identified by match to protein family HMM PF00395
YP_002815263.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683
YP_002815264.1	identified by match to protein family HMM PF01593
YP_002815265.1	Converts (S)-lactate and NAD(+) to pyruvate and NADH
YP_002815266.1	identified by match to protein family HMM PF01594
YP_002815267.1	catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia
YP_002815269.1	identified by match to protein family HMM PF00881
YP_002815270.1	identified by match to protein family HMM PF01323
YP_002815271.1	identified by match to protein family HMM PF02082
YP_002815272.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002815273.1	identified by match to protein family HMM PF00892
YP_002815274.1	identified by match to protein family HMM PF00561
YP_002815275.1	identified by match to protein family HMM PF07987
YP_002815276.1	identified by match to protein family HMM PF04234; match to protein family HMM PF05425
YP_002815277.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815278.1	identified by match to protein family HMM PF00903
YP_002815279.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_002815280.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05525
YP_002815281.1	FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds
YP_002815282.1	identified by match to protein family HMM PF01758
YP_002815284.1	decatenates replicating daughter chromosomes
YP_002815286.1	identified by match to protein family HMM PF00018; match to protein family HMM PF01551; match to protein family HMM PF06347; match to protein family HMM PF08239
YP_002815287.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00394; match to protein family HMM PF07731
YP_002815288.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07731; match to protein family HMM PF07732
YP_002815289.1	identified by match to protein family HMM PF00557; match to protein family HMM PF05195
YP_002815290.1	identified by match to protein family HMM PF02012
YP_002815291.1	identified by match to protein family HMM PF02683
YP_002815293.1	identified by match to protein family HMM PF05979
YP_002815294.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002815295.1	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis
YP_002815296.1	Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway
YP_002815297.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804
YP_002815298.1	catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate
YP_002815299.1	identified by match to protein family HMM PF04198
YP_002815300.1	identified by match to protein family HMM PF01810
YP_002815301.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF05791
YP_002815302.1	identified by match to protein family HMM PF05791
YP_002815303.1	identified by match to protein family HMM PF05791
YP_002815304.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002815305.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002815307.1	identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745
YP_002815308.1	identified by glimmer; putative
YP_002815309.1	identified by match to protein family HMM PF00581
YP_002815310.1	identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197
YP_002815311.1	identified by match to protein family HMM PF01551
YP_002815312.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002815313.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815314.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002815315.1	identified by match to protein family HMM PF00583
YP_002815316.1	identified by match to protein family HMM PF04055
YP_002815317.1	identified by glimmer; putative
YP_002815318.1	identified by glimmer; putative
YP_002815320.1	identified by glimmer; putative
YP_002815321.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00496
YP_002815323.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_002815325.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00583
YP_002815326.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815327.1	identified by match to protein family HMM PF02550; match to protein family HMM TIGR03458
YP_002815328.1	identified by match to protein family HMM PF04397
YP_002815329.1	identified by match to protein family HMM PF00561
YP_002815330.1	identified by match to protein family HMM PF02900
YP_002815331.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002815333.1	identified by match to protein family HMM PF04474
YP_002815334.1	identified by match to protein family HMM PF09587
YP_002815335.1	catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic
YP_002815336.1	catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis
YP_002815337.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_002815338.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, this subunit subunit is required for full activity and valine sensitivity; also known as acetolactate synthase small subunit
YP_002815339.1	catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit
YP_002815340.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_002815341.1	identified by match to protein family HMM PF00106
YP_002815342.1	identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401
YP_002815343.1	identified by glimmer; putative
YP_002815344.1	identified by glimmer; putative
YP_002815345.1	identified by match to protein family HMM PF01210; match to protein family HMM PF03446; match to protein family HMM PF03807
YP_002815346.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815347.1	identified by match to protein family HMM PF07299
YP_002815348.1	identified by glimmer; putative
YP_002815349.1	identified by match to protein family HMM PF04239
YP_002815351.1	identified by match to protein family HMM PF01522
YP_002815352.1	identified by match to protein family HMM PF00209
YP_002815353.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023
YP_002815355.1	identified by match to protein family HMM PF00583
YP_002815356.1	identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139
YP_002815357.1	identified by match to protein family HMM PF07690
YP_002815358.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00496
YP_002815359.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815360.1	identified by match to protein family HMM PF01926; match to protein family HMM TIGR03156
YP_002815362.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis
YP_002815363.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815364.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815365.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF03976
YP_002815366.1	identified by match to protein family HMM PF02554
YP_002815368.1	identified by glimmer; putative
YP_002815369.1	identified by match to protein family HMM PF07690
YP_002815370.1	identified by match to protein family HMM PF00395; match to protein family HMM PF01832
YP_002815371.1	identified by match to protein family HMM PF00395; match to protein family HMM PF01520
YP_002815372.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00293
YP_002815375.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815376.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815377.1	catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.
YP_002815378.1	identified by match to protein family HMM PF00903
YP_002815379.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002815380.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002815381.1	catalyzes the formation of asparagine from aspartate and ammonia
YP_002815382.1	identified by glimmer; putative
YP_002815383.1	identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455
YP_002815385.1	identified by match to protein family HMM PF00072; match to protein family HMM PF08664
YP_002815386.1	identified by match to protein family HMM PF02518
YP_002815387.1	malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate
YP_002815388.1	catalyzes the formation of fumarate from aspartate
YP_002815389.1	identified by match to protein family HMM PF00375
YP_002815390.1	Catalyzes the phosphorylation of UMP to UDP
YP_002815391.1	identified by match to protein family HMM PF00614
YP_002815392.1	identified by match to protein family HMM PF01061
YP_002815393.1	identified by match to protein family HMM PF01061
YP_002815394.1	identified by match to protein family HMM PF00005
YP_002815395.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07730
YP_002815396.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_002815397.1	Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: in B. thuringiensis this protein is involved in beta-exotoxin I production
YP_002815398.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002815401.1	identified by match to protein family HMM PF04286
YP_002815402.1	catalyzes the formation of pyruvate from serine
YP_002815403.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01766
YP_002815404.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01765
YP_002815405.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_002815407.1	identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534
YP_002815408.1	identified by match to protein family HMM PF02683
YP_002815409.1	identified by match to protein family HMM PF01435; match to protein family HMM PF05569
YP_002815410.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF03965
YP_002815411.1	identified by glimmer; putative
YP_002815412.1	identified by match to protein family HMM PF03575
YP_002815413.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01554
YP_002815414.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01554
YP_002815416.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815417.1	identified by glimmer; putative
YP_002815418.1	class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle
YP_002815419.1	identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM TIGR00931
YP_002815420.1	identified by glimmer; putative
YP_002815422.1	identified by match to protein family HMM PF09323
YP_002815423.1	identified by match to protein family HMM PF03773
YP_002815424.1	identified by match to protein family HMM PF02492; match to protein family HMM PF07683
YP_002815425.1	identified by match to protein family HMM PF00892
YP_002815426.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_002815427.1	identified by glimmer; putative
YP_002815428.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_002815431.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_002815432.1	identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536
YP_002815434.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815435.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815436.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815437.1	identified by match to protein family HMM PF00561
YP_002815438.1	identified by glimmer; putative
YP_002815439.1	identified by match to protein family HMM PF00300
YP_002815442.1	identified by match to protein family HMM PF00190
YP_002815443.1	identified by glimmer; putative
YP_002815444.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815446.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521
YP_002815447.1	identified by match to protein family HMM PF00528
YP_002815448.1	identified by match to protein family HMM PF01547
YP_002815449.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005
YP_002815450.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002815452.1	identified by match to protein family HMM PF07690
YP_002815453.1	identified by match to protein family HMM PF01381
YP_002815454.1	identified by match to protein family HMM PF08141; match to protein family HMM TIGR02861
YP_002815455.1	identified by match to protein family HMM PF03992
YP_002815456.1	identified by match to protein family HMM PF01738
YP_002815458.1	identified by match to protein family HMM PF00440
YP_002815459.1	identified by glimmer; putative
YP_002815460.1	identified by match to protein family HMM PF05437
YP_002815461.1	identified by match to protein family HMM PF03591
YP_002815462.1	identified by match to protein family HMM PF01978
YP_002815463.1	identified by match to protein family HMM PF07973
YP_002815464.1	makes up the distal portion of the flagellar basal body rod
YP_002815465.1	positive regulator of class III flagellar genes
YP_002815466.1	membrane protein involved in the flagellar export apparatus
YP_002815467.1	membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export
YP_002815468.1	FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus
YP_002815469.1	with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus
YP_002815470.1	FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus
YP_002815472.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_002815473.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01052
YP_002815474.1	with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation
YP_002815475.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_002815476.1	identified by match to protein family HMM PF01464
YP_002815477.1	structural flagella protein
YP_002815478.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002815479.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by glimmer; putative
YP_002815480.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002815481.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815482.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00535
YP_002815483.1	identified by glimmer; putative
YP_002815484.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_002815485.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002815486.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002815487.1	identified by glimmer; putative
YP_002815488.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative
YP_002815489.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00535
YP_002815491.1	identified by match to protein family HMM PF00072; match to protein family HMM PF01584
YP_002815492.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815493.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815495.1	the hook connects flagellar basal body to the flagellar filament
YP_002815496.1	acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod
YP_002815497.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815498.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815499.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815500.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815501.1	involved in type III protein export during flagellum assembly
YP_002815502.1	binds to and inhibits the function of flagella specific ATPase FliI
YP_002815503.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_002815504.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815505.1	the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod
YP_002815506.1	forms a junction between the M-ring and FlgB during flagella biosynthesis
YP_002815507.1	with FlgF and B makes up the proximal portion of the flagellar basal body rod
YP_002815508.1	with FlgF and C makes up the proximal portion of the flagellar basal body rod
YP_002815511.1	involved in flagellin assembly
YP_002815512.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815513.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815514.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF06429
YP_002815515.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815518.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815519.1	identified by match to protein family HMM PF01739; match to protein family HMM PF03705
YP_002815520.1	identified by glimmer; putative
YP_002815521.1	identified by glimmer; putative
YP_002815522.1	One of three proteins involved in switching the direction of the flagellar rotation
YP_002815523.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01584; match to protein family HMM PF02518; match to protein family HMM PF02895
YP_002815524.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01627
YP_002815525.1	identified by match to protein family HMM PF00072
YP_002815526.1	Homolog to MotB, appears to be involved in motility on surfaces and under specific ionic conditions. With MotP (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine
YP_002815527.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01618
YP_002815528.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002815529.1	identified by match to protein family HMM PF01966
YP_002815530.1	identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383
YP_002815531.1	identified by match to protein family HMM PF09388
YP_002815532.1	identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732
YP_002815534.1	identified by match to protein family HMM PF07690
YP_002815535.1	identified by match to protein family HMM PF01022
YP_002815536.1	identified by match to protein family HMM PF07690
YP_002815537.1	identified by match to protein family HMM PF01925
YP_002815538.1	identified by match to protein family HMM PF01965
YP_002815539.1	identified by match to protein family HMM PF00881
YP_002815541.1	identified by match to protein family HMM PF02698
YP_002815542.1	identified by glimmer; putative
YP_002815543.1	identified by match to protein family HMM PF04239
YP_002815544.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_002815545.1	identified by match to protein family HMM PF00376
YP_002815546.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07521
YP_002815547.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00753
YP_002815548.1	identified by match to protein family HMM PF00999; match to protein family HMM TIGR00932
YP_002815549.1	identified by glimmer; putative
YP_002815550.1	identified by match to protein family HMM PF00202
YP_002815551.1	identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813
YP_002815552.1	identified by match to protein family HMM PF04341
YP_002815553.1	identified by match to protein family HMM PF04116
YP_002815554.1	identified by glimmer; putative
YP_002815555.1	identified by match to protein family HMM PF01810
YP_002815556.1	identified by match to protein family HMM PF08892
YP_002815557.1	identified by match to protein family HMM PF00313
YP_002815561.1	identified by match to protein family HMM PF06177
YP_002815562.1	identified by match to protein family HMM PF01263
YP_002815563.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_002815564.1	identified by match to protein family HMM PF00892
YP_002815565.1	identified by glimmer; putative
YP_002815566.1	identified by match to protein family HMM PF00857
YP_002815567.1	identified by match to protein family HMM PF00583
YP_002815568.1	identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451
YP_002815569.1	identified by glimmer; putative
YP_002815570.1	identified by match to protein family HMM PF00534
YP_002815571.1	identified by match to protein family HMM PF00535
YP_002815572.1	identified by match to protein family HMM PF04932
YP_002815573.1	identified by match to protein family HMM PF01943
YP_002815574.1	identified by match to protein family HMM PF02397
YP_002815575.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815576.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815577.1	identified by match to protein family HMM PF02706
YP_002815578.1	identified by match to protein family HMM PF01757
YP_002815580.1	identified by match to protein family HMM PF01367; match to protein family HMM PF02739
YP_002815582.1	identified by match to protein family HMM PF03994
YP_002815583.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF03738
YP_002815585.1	identified by glimmer; putative
YP_002815586.1	identified by match to protein family HMM PF00581
YP_002815588.1	identified by match to protein family HMM PF00583
YP_002815589.1	identified by glimmer; putative
YP_002815590.1	identified by match to protein family HMM PF00350; match to protein family HMM PF01926
YP_002815591.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002815592.1	identified by match to protein family HMM PF04171; match to protein family HMM PF04235
YP_002815593.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173
YP_002815594.1	Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine
YP_002815595.1	identified by glimmer; putative
YP_002815596.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn
YP_002815597.1	identified by match to protein family HMM PF01636
YP_002815598.1	identified by match to protein family HMM PF00583
YP_002815599.1	identified by match to protein family HMM PF02074
YP_002815601.1	identified by glimmer; putative
YP_002815602.1	identified by match to protein family HMM PF01170; match to protein family HMM PF02926
YP_002815603.1	identified by match to protein family HMM PF05103; match to protein family HMM TIGR03544
YP_002815604.1	identified by match to protein family HMM PF06908
YP_002815608.1	identified by match to protein family HMM PF08807
YP_002815609.1	identified by glimmer; putative
YP_002815610.1	identified by glimmer; putative
YP_002815612.1	functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC
YP_002815613.1	identified by match to protein family HMM PF00041; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_002815615.1	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083
YP_002815616.1	identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446
YP_002815617.1	catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate
YP_002815618.1	identified by match to protein family HMM PF03413
YP_002815620.1	unwinds DNA
YP_002815621.1	Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5)
YP_002815622.1	catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine
YP_002815623.1	catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate
YP_002815625.1	identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121; match to protein family HMM TIGR00122
YP_002815626.1	catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity
YP_002815627.1	identified by match to protein family HMM PF00534
YP_002815628.1	identified by match to protein family HMM PF02585
YP_002815629.1	catalyzes the formation of methylglyoxal from glycerone phosphate
YP_002815630.1	catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis
YP_002815631.1	identified by match to protein family HMM PF03819
YP_002815632.1	identified by match to protein family HMM PF02588
YP_002815633.1	identified by match to protein family HMM PF03167
YP_002815634.1	identified by match to protein family HMM PF04298
YP_002815635.1	identified by match to protein family HMM PF09577; match to protein family HMM TIGR02878
YP_002815636.1	identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906
YP_002815637.1	identified by match to protein family HMM PF07187
YP_002815639.1	electron transport protein
YP_002815640.1	identified by match to protein family HMM PF00355
YP_002815642.1	identified by match to protein family HMM PF08858; match to protein family HMM PF08864
YP_002815643.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720
YP_002815644.1	catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis
YP_002815645.1	catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis
YP_002815646.1	catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis
YP_002815647.1	catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate
YP_002815648.1	identified by match to protein family HMM PF00348; match to protein family HMM TIGR02748
YP_002815649.1	Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone
YP_002815650.1	identified by match to protein family HMM PF07307
YP_002815651.1	involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer
YP_002815652.1	identified by match to protein family HMM PF00216
YP_002815653.1	identified by match to protein family HMM PF09547; match to protein family HMM TIGR02836
YP_002815657.1	catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate
YP_002815658.1	EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains
YP_002815662.1	identified by glimmer; putative
YP_002815663.1	catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate
YP_002815664.1	in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins
YP_002815665.1	Catalyzes the formation of (d)CDP from ATP and (d)CMP
YP_002815666.1	identified by match to protein family HMM PF00710
YP_002815667.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_002815668.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01510
YP_002815669.1	identified by glimmer; putative
YP_002815670.1	identified by glimmer; putative
YP_002815671.1	identified by match to protein family HMM PF00208; match to protein family HMM PF02812
YP_002815672.1	enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence
YP_002815673.1	identified by match to protein family HMM PF00376
YP_002815674.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815675.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00149
YP_002815676.1	identified by match to protein family HMM PF01476
YP_002815677.1	identified by match to protein family HMM PF02517
YP_002815678.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614
YP_002815682.1	identified by glimmer; putative
YP_002815683.1	identified by match to protein family HMM PF01476; match to protein family HMM PF01551
YP_002815684.1	identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636
YP_002815685.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002815686.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002815687.1	identified by match to protein family HMM PF01578; match to protein family HMM TIGR03144
YP_002815688.1	identified by match to protein family HMM PF05140
YP_002815689.1	catalyzes the reduction of the disulfide bonds in the heme binding site of apocytochrome c
YP_002815690.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_002815691.1	identified by match to protein family HMM PF07670
YP_002815692.1	identified by match to protein family HMM PF07670
YP_002815693.1	identified by match to protein family HMM PF00768; match to protein family HMM PF07943
YP_002815694.1	identified by match to protein family HMM PF00081; match to protein family HMM PF02777
YP_002815696.1	identified by glimmer; putative
YP_002815697.1	identified by match to protein family HMM PF03706; match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331
YP_002815699.1	identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766
YP_002815700.1	catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate
YP_002815701.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002815702.1	identified by match to protein family HMM PF00589
YP_002815703.1	identified by glimmer; putative
YP_002815704.1	identified by match to protein family HMM PF01904
YP_002815705.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_002815706.1	identified by glimmer; putative
YP_002815707.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815708.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_002815709.1	identified by match to protein family HMM PF01865
YP_002815710.1	identified by match to protein family HMM PF01384
YP_002815711.1	identified by match to protein family HMM PF01925
YP_002815712.1	identified by glimmer; putative
YP_002815713.1	identified by match to protein family HMM PF00027
YP_002815714.1	flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine
YP_002815716.1	identified by match to protein family HMM PF02163
YP_002815717.1	identified by glimmer; putative
YP_002815718.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815719.1	identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002815721.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_002815722.1	identified by glimmer; putative
YP_002815723.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281
YP_002815724.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07730
YP_002815726.1	identified by match to protein family HMM PF04012
YP_002815728.1	identified by match to protein family HMM PF03553; match to protein family HMM PF03600
YP_002815729.1	identified by match to protein family HMM PF04167
YP_002815730.1	identified by match to protein family HMM PF00375
YP_002815731.1	identified by match to protein family HMM PF01551
YP_002815732.1	identified by match to protein family HMM PF00209
YP_002815733.1	catalyzes the formation of siroheme from precorrin-2
YP_002815734.1	identified by match to protein family HMM PF01903
YP_002815735.1	catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1
YP_002815736.1	identified by glimmer; putative
YP_002815737.1	identified by match to protein family HMM PF01077; match to protein family HMM PF03460
YP_002815738.1	identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455
YP_002815739.1	ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms
YP_002815740.1	identified by match to protein family HMM PF01507; match to protein family HMM TIGR00434; match to protein family HMM TIGR02055
YP_002815742.1	identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048
YP_002815743.1	identified by glimmer; putative
YP_002815744.1	identified by match to protein family HMM PF00884
YP_002815745.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473
YP_002815746.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_002815747.1	identified by glimmer; putative
YP_002815748.1	catalyzes the formation of L-histidinol from L-histidinol phosphate
YP_002815749.1	catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis
YP_002815750.1	PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers
YP_002815751.1	catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase
YP_002815752.1	catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide
YP_002815753.1	with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide
YP_002815754.1	catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis
YP_002815755.1	catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer
YP_002815756.1	short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ
YP_002815757.1	May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
YP_002815758.1	catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D
YP_002815759.1	dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate
YP_002815760.1	catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis
YP_002815761.1	catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis
YP_002815762.1	catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis
YP_002815763.1	with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit
YP_002815764.1	catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit
YP_002815765.1	catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids
YP_002815766.1	identified by glimmer; putative
YP_002815767.1	identified by glimmer; putative
YP_002815768.1	identified by match to protein family HMM PF03698
YP_002815769.1	identified by glimmer; putative
YP_002815770.1	identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874
YP_002815772.1	identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933
YP_002815773.1	identified by match to protein family HMM PF00375
YP_002815774.1	identified by glimmer; putative
YP_002815775.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01047
YP_002815776.1	identified by glimmer; putative
YP_002815778.1	BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_002815779.1	NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones
YP_002815780.1	identified by glimmer; putative
YP_002815781.1	identified by glimmer; putative
YP_002815783.1	identified by match to protein family HMM PF01636
YP_002815784.1	identified by glimmer; putative
YP_002815785.1	identified by glimmer; putative
YP_002815786.1	An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group
YP_002815787.1	identified by glimmer; putative
YP_002815788.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_002815790.1	transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid
YP_002815791.1	identified by match to protein family HMM PF03062
YP_002815792.1	D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid
YP_002815793.1	identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918
YP_002815794.1	identified by match to protein family HMM PF01180; match to protein family HMM PF03060
YP_002815795.1	identified by match to protein family HMM PF02016
YP_002815797.1	identified by match to protein family HMM PF00857
YP_002815799.1	identified by match to protein family HMM PF01037
YP_002815800.1	identified by glimmer; putative
YP_002815801.1	identified by match to protein family HMM PF02517
YP_002815803.1	identified by match to protein family HMM PF00005
YP_002815805.1	identified by match to protein family HMM PF00005
YP_002815806.1	identified by match to protein family HMM PF00392
YP_002815807.1	B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE
YP_002815808.1	identified by match to protein family HMM PF02867
YP_002815809.1	identified by match to protein family HMM PF01541; match to protein family HMM PF07460; match to protein family HMM TIGR01453
YP_002815810.1	identified by match to protein family HMM PF00317
YP_002815811.1	in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF
YP_002815812.1	identified by glimmer; putative
YP_002815814.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815815.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00583
YP_002815817.1	identified by glimmer; putative
YP_002815819.1	NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis
YP_002815820.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR03365
YP_002815821.1	identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367
YP_002815822.1	identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364
YP_002815823.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002815824.1	identified by glimmer; putative
YP_002815826.1	identified by match to protein family HMM PF01432; match to protein family HMM TIGR02289
YP_002815827.1	identified by match to protein family HMM PF01047
YP_002815828.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002815829.1	identified by match to protein family HMM PF09388
YP_002815830.1	identified by match to protein family HMM PF04748
YP_002815831.1	identified by match to protein family HMM PF00571
YP_002815832.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815833.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815834.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00395
YP_002815835.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05031
YP_002815836.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815837.1	identified by glimmer; putative
YP_002815838.1	identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279
YP_002815839.1	identified by match to protein family HMM PF03435
YP_002815840.1	catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate
YP_002815841.1	catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate
YP_002815842.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00528; match to protein family HMM TIGR03262
YP_002815843.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005
YP_002815844.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815845.1	identified by match to protein family HMM PF01547; match to protein family HMM TIGR03261
YP_002815847.1	identified by glimmer; putative
YP_002815848.1	identified by match to protein family HMM PF02386
YP_002815849.1	identified by match to protein family HMM PF01266
YP_002815850.1	identified by match to protein family HMM PF00561; match to protein family HMM TIGR01836
YP_002815851.1	catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis
YP_002815852.1	identified by match to protein family HMM TIGR02132
YP_002815853.1	identified by match to protein family HMM PF03551; match to protein family HMM TIGR02719
YP_002815854.1	identified by match to protein family HMM PF09602; match to protein family HMM TIGR02131
YP_002815855.1	identified by match to protein family HMM PF01575
YP_002815856.1	identified by match to protein family HMM PF00269
YP_002815857.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02386
YP_002815858.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815859.1	identified by match to protein family HMM PF03741
YP_002815860.1	identified by match to protein family HMM PF01226
YP_002815861.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815862.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815863.1	identified by match to protein family HMM PF01478; match to protein family HMM PF06750
YP_002815864.1	identified by match to protein family HMM PF02589
YP_002815865.1	identified by match to protein family HMM PF02589; match to protein family HMM TIGR00273
YP_002815866.1	identified by match to protein family HMM PF02754
YP_002815867.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07729
YP_002815868.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002815869.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002815870.1	identified by match to protein family HMM TIGR02276
YP_002815871.1	identified by match to protein family HMM PF05651
YP_002815872.1	identified by match to protein family HMM PF01565; match to protein family HMM PF02913; match to protein family HMM TIGR00387
YP_002815873.1	identified by match to protein family HMM PF02754
YP_002815874.1	identified by match to protein family HMM PF00188; match to protein family HMM TIGR02909
YP_002815875.1	identified by match to protein family HMM PF07853
YP_002815876.1	identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005
YP_002815879.1	identified by match to protein family HMM PF01569
YP_002815880.1	identified by match to protein family HMM PF01547
YP_002815881.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00528
YP_002815882.1	identified by match to protein family HMM PF00528
YP_002815883.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR01187
YP_002815884.1	identified by match to protein family HMM PF00171
YP_002815885.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05547; match to protein family HMM TIGR03296
YP_002815886.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815887.1	identified by match to protein family HMM PF08671
YP_002815888.1	identified by match to protein family HMM PF01381; match to protein family HMM PF08671
YP_002815892.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228
YP_002815893.1	identified by match to protein family HMM PF00768
YP_002815894.1	identified by glimmer; putative
YP_002815895.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002815896.1	identified by glimmer; putative
YP_002815898.1	identified by glimmer; putative
YP_002815899.1	identified by match to protein family HMM PF06013
YP_002815902.1	identified by glimmer; putative
YP_002815904.1	identified by match to protein family HMM PF01381
YP_002815905.1	SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide
YP_002815906.1	component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA
YP_002815907.1	identified by glimmer; putative
YP_002815908.1	identified by match to protein family HMM PF02624; match to protein family HMM TIGR03604
YP_002815909.1	identified by match to protein family HMM TIGR03605
YP_002815910.1	identified by glimmer; putative
YP_002815911.1	identified by match to protein family HMM PF00583
YP_002815912.1	identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992
YP_002815914.1	identified by glimmer; putative
YP_002815919.1	catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis
YP_002815920.1	catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate
YP_002815921.1	catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis
YP_002815922.1	involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water
YP_002815923.1	Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate
YP_002815924.1	TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity
YP_002815925.1	with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine
YP_002815926.1	identified by glimmer; putative
YP_002815927.1	identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121
YP_002815929.1	identified by match to protein family HMM PF06713
YP_002815930.1	identified by match to protein family HMM PF00892
YP_002815931.1	identified by match to protein family HMM PF00756
YP_002815932.1	similar to 2'-5' RNA ligase
YP_002815933.1	identified by match to protein family HMM PF00583
YP_002815934.1	identified by match to protein family HMM PF00580
YP_002815936.1	identified by glimmer; putative
YP_002815937.1	identified by glimmer; putative
YP_002815938.1	identified by match to protein family HMM PF07098
YP_002815941.1	Catalyzes a key regulatory step in fatty acid biosynthesis
YP_002815942.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214
YP_002815943.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181
YP_002815944.1	identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221
YP_002815945.1	identified by match to protein family HMM PF00483
YP_002815947.1	identified by glimmer; putative
YP_002815948.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002815949.1	identified by match to protein family HMM PF00535
YP_002815950.1	identified by match to protein family HMM PF01391
YP_002815951.1	identified by match to protein family HMM PF05711
YP_002815952.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002815953.1	identified by match to protein family HMM PF00535
YP_002815954.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01098
YP_002815955.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815956.1	asymmetrical; catalyzes the formation of NTP and NMP from P(1),P(4)-bis(5'-nucleosyl) tetraphosphate; acts on bis(5'-guanosyl) tetraphosphate, bis(5'-xanthosyl)-tetraphosphate, on bis(5'-adenosyl)-tetraphosphate, and bis(5'-uridyl)-tetraphosphate
YP_002815957.1	identified by match to protein family HMM PF05658
YP_002815958.1	identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005
YP_002815959.1	catalyzes the phosphorylation of NAD to NADP
YP_002815960.1	identified by match to protein family HMM PF04607
YP_002815962.1	identified by match to protein family HMM PF01928
YP_002815963.1	identified by match to protein family HMM PF01152
YP_002815966.1	identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181
YP_002815967.1	identified by match to protein family HMM PF06054
YP_002815968.1	catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol)
YP_002815969.1	enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence
YP_002815970.1	identified by match to protein family HMM PF03741
YP_002815971.1	the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress
YP_002815973.1	identified by glimmer; putative
YP_002815974.1	identified by match to protein family HMM PF00496
YP_002815975.1	identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797
YP_002815976.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352
YP_002815977.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_002815978.1	identified by match to protein family HMM PF00528
YP_002815979.1	identified by match to protein family HMM PF00528
YP_002815980.1	identified by match to protein family HMM PF00496
YP_002815981.1	identified by glimmer; putative
YP_002815982.1	catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002815985.1	FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP
YP_002815986.1	FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs
YP_002815988.1	identified by match to protein family HMM PF01370
YP_002815991.1	identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346
YP_002815992.1	identified by glimmer; putative
YP_002815993.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002815994.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_002815997.1	identified by match to protein family HMM PF02588
YP_002815999.1	cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein
YP_002816000.1	identified by glimmer; putative
YP_002816002.1	putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription
YP_002816003.1	identified by match to protein family HMM PF01381
YP_002816004.1	identified by match to protein family HMM PF00128
YP_002816005.1	identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836
YP_002816006.1	identified by match to protein family HMM PF00199
YP_002816007.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_002816008.1	identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536
YP_002816010.1	identified by match to protein family HMM PF07457
YP_002816011.1	identified by match to protein family HMM PF00202; match to protein family HMM TIGR01885
YP_002816012.1	identified by glimmer; putative
YP_002816013.1	identified by match to protein family HMM PF01557
YP_002816014.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF09388
YP_002816022.1	identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785
YP_002816023.1	identified by match to protein family HMM TIGR02773
YP_002816024.1	identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227
YP_002816025.1	identified by match to protein family HMM PF09335
YP_002816026.1	identified by match to protein family HMM PF06338
YP_002816027.1	identified by glimmer; putative
YP_002816028.1	identified by glimmer; putative
YP_002816029.1	identified by match to protein family HMM PF00313
YP_002816030.1	identified by match to protein family HMM PF01636
YP_002816031.1	identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346
YP_002816032.1	Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle
YP_002816033.1	identified by match to protein family HMM PF00395
YP_002816034.1	identified by match to protein family HMM PF00395
YP_002816035.1	identified by glimmer; putative
YP_002816036.1	identified by match to protein family HMM PF00395
YP_002816037.1	identified by match to protein family HMM PF00892
YP_002816038.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_002816039.1	identified by match to protein family HMM PF01435
YP_002816040.1	identified by glimmer; putative
YP_002816041.1	identified by glimmer; putative
YP_002816042.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816043.1	identified by match to protein family HMM PF02517
YP_002816044.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002816045.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002816046.1	identified by glimmer; putative
YP_002816047.1	identified by match to protein family HMM PF00903
YP_002816048.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00165; match to protein family HMM PF06445
YP_002816049.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_002816051.1	identified by match to protein family HMM PF01966
YP_002816052.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00149
YP_002816053.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002816055.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002816056.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative
YP_002816057.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002816058.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM TIGR01784
YP_002816059.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts
YP_002816060.1	identified by glimmer; putative
YP_002816061.1	identified by glimmer; putative
YP_002816063.1	identified by match to protein family HMM PF06877
YP_002816064.1	identified by glimmer; putative
YP_002816065.1	identified by match to protein family HMM PF02018; match to protein family HMM PF05593; match to protein family HMM TIGR01643
YP_002816066.1	identified by match to protein family HMM PF00395; match to protein family HMM PF05031
YP_002816068.1	activates fatty acids by binding to coenzyme A
YP_002816070.1	identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545
YP_002816071.1	identified by match to protein family HMM PF00753
YP_002816073.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_002816074.1	identified by match to protein family HMM PF00583
YP_002816075.1	identified by glimmer; putative
YP_002816078.1	identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062
YP_002816079.1	identified by match to protein family HMM PF00440
YP_002816080.1	identified by match to protein family HMM PF05569
YP_002816081.1	identified by match to protein family HMM PF03965
YP_002816083.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816084.1	identified by match to protein family HMM PF03372
YP_002816085.1	identified by glimmer; putative
YP_002816086.1	catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX
YP_002816087.1	protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic
YP_002816088.1	catalyzes the formation of coproporphyrinogen from uroporphyrinogen III
YP_002816089.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_002816090.1	identified by match to protein family HMM PF03992
YP_002816091.1	identified by match to protein family HMM PF03703
YP_002816092.1	identified by match to protein family HMM PF03703
YP_002816093.1	identified by glimmer; putative
YP_002816094.1	identified by match to protein family HMM PF00376; match to protein family HMM PF09278
YP_002816095.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00805
YP_002816097.1	identified by match to protein family HMM PF06993
YP_002816099.1	identified by glimmer; putative
YP_002816100.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03703
YP_002816101.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816102.1	identified by match to protein family HMM PF03703
YP_002816103.1	identified by glimmer; putative
YP_002816104.1	identified by match to protein family HMM PF00440
YP_002816105.1	identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732
YP_002816107.1	identified by match to protein family HMM PF05975
YP_002816108.1	identified by match to protein family HMM PF00005
YP_002816109.1	identified by match to protein family HMM PF01230
YP_002816111.1	hpr; ScoC; MarR family; protease production regulatory protein
YP_002816112.1	identified by match to protein family HMM PF08963
YP_002816114.1	cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein
YP_002816115.1	identified by match to protein family HMM PF00580
YP_002816116.1	identified by glimmer; putative
YP_002816117.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_002816118.1	identified by match to protein family HMM PF07690
YP_002816119.1	identified by match to protein family HMM PF07681
YP_002816120.1	identified by match to protein family HMM PF01047
YP_002816122.1	part of sigC operon that is induced by temperature upshift
YP_002816123.1	part of sigC operon induced by temperature upshift
YP_002816125.1	identified by glimmer; putative
YP_002816126.1	identified by match to protein family HMM PF01266
YP_002816127.1	Converts glycerol and ADP to glycerol-3-phosphate and ADP
YP_002816128.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861
YP_002816129.1	identified by match to protein family HMM PF04309
YP_002816130.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816131.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002816134.1	identified by match to protein family HMM PF00561
YP_002816135.1	identified by glimmer; putative
YP_002816136.1	identified by match to protein family HMM PF00515
YP_002816137.1	identified by match to protein family HMM PF00903
YP_002816138.1	identified by match to protein family HMM PF00903
YP_002816139.1	identified by match to protein family HMM PF07690
YP_002816140.1	identified by match to protein family HMM PF00440
YP_002816141.1	catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates
YP_002816143.1	identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766
YP_002816145.1	identified by match to protein family HMM PF00149
YP_002816147.1	identified by glimmer; putative
YP_002816149.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002816150.1	identified by glimmer; putative
YP_002816151.1	identified by glimmer; putative
YP_002816152.1	identified by match to protein family HMM PF01906
YP_002816153.1	identified by glimmer; putative
YP_002816155.1	identified by glimmer; putative
YP_002816156.1	identified by glimmer; putative
YP_002816157.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01590; match to protein family HMM PF02518
YP_002816158.1	identified by match to protein family HMM PF01739; match to protein family HMM PF03705
YP_002816159.1	identified by match to protein family HMM PF00072; match to protein family HMM PF07228
YP_002816160.1	identified by match to protein family HMM PF00210
YP_002816161.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase
YP_002816162.1	binds to sigma-B preventing the formation of an RNA polymerase holoenzyme
YP_002816163.1	identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377
YP_002816164.1	identified by glimmer; putative
YP_002816165.1	identified by match to protein family HMM PF04226
YP_002816166.1	identified by match to protein family HMM PF05532
YP_002816169.1	identified by glimmer; putative
YP_002816171.1	identified by match to protein family HMM PF01047; match to protein family HMM PF03551
YP_002816172.1	identified by match to protein family HMM PF00395
YP_002816173.1	identified by glimmer; putative
YP_002816174.1	identified by glimmer; putative
YP_002816175.1	identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732
YP_002816176.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01966
YP_002816177.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816178.1	identified by glimmer; putative
YP_002816179.1	identified by glimmer; putative
YP_002816180.1	identified by match to protein family HMM PF02517
YP_002816181.1	identified by glimmer; putative
YP_002816182.1	identified by glimmer; putative
YP_002816184.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_002816185.1	identified by match to protein family HMM PF02525
YP_002816186.1	in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone
YP_002816187.1	identified by match to protein family HMM TIGR02366
YP_002816188.1	similar to DhaK; in Lactococcus lactis this protein froms a stable complex with DhaS and activates transcription of the dha operon in the presence of dihydroxyacetone
YP_002816189.1	identified by match to protein family HMM PF04892
YP_002816192.1	identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473
YP_002816193.1	identified by match to protein family HMM PF01047
YP_002816194.1	identified by glimmer; putative
YP_002816195.1	identified by glimmer; putative
YP_002816196.1	identified by match to protein family HMM PF00440
YP_002816197.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993
YP_002816198.1	identified by match to protein family HMM PF04982
YP_002816199.1	identified by match to protein family HMM PF07336
YP_002816200.1	identified by match to protein family HMM PF03403
YP_002816202.1	identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732
YP_002816203.1	identified by match to protein family HMM PF03551
YP_002816205.1	identified by glimmer; putative
YP_002816206.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_002816208.1	identified by glimmer; putative
YP_002816209.1	identified by match to protein family HMM PF01925
YP_002816210.1	identified by match to protein family HMM PF01978
YP_002816214.1	unwinds double stranded DNA
YP_002816215.1	identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446
YP_002816216.1	identified by match to protein family HMM PF00376
YP_002816217.1	identified by glimmer; putative
YP_002816218.1	identified by glimmer; putative
YP_002816220.1	identified by match to protein family HMM PF07728
YP_002816221.1	identified by match to protein family HMM PF02342
YP_002816222.1	identified by match to protein family HMM PF03401
YP_002816223.1	identified by match to protein family HMM PF00072
YP_002816224.1	identified by match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08448
YP_002816225.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002816226.1	identified by match to protein family HMM PF09346
YP_002816227.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002816228.1	identified by glimmer; putative
YP_002816229.1	identified by glimmer; putative
YP_002816231.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_002816232.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_002816233.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002816234.1	identified by match to protein family HMM PF00528
YP_002816235.1	identified by match to protein family HMM PF00528
YP_002816236.1	identified by match to protein family HMM PF00496
YP_002816237.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816238.1	identified by glimmer; putative
YP_002816239.1	identified by glimmer; putative
YP_002816241.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816242.1	catalyzes the formation of L-proline from L-ornithine
YP_002816243.1	identified by match to protein family HMM PF05544
YP_002816244.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816245.1	identified by match to protein family HMM PF01170
YP_002816246.1	identified by match to protein family HMM PF00395; match to protein family HMM PF01520
YP_002816247.1	identified by match to protein family HMM PF05343
YP_002816248.1	identified by glimmer; putative
YP_002816249.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816250.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_002816253.1	identified by match to protein family HMM PF03062
YP_002816254.1	identified by match to protein family HMM PF03062
YP_002816256.1	identified by match to protein family HMM PF00395
YP_002816257.1	identified by match to protein family HMM PF00395; match to protein family HMM PF02368
YP_002816258.1	identified by match to protein family HMM PF04230; match to protein family HMM TIGR03609
YP_002816259.1	identified by match to protein family HMM PF01943; match to protein family HMM PF03023
YP_002816260.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins
YP_002816262.1	identified by glimmer; putative
YP_002816263.1	identified by glimmer; putative
YP_002816264.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF00955; match to protein family HMM PF01740
YP_002816266.1	activates fatty acids by binding to coenzyme A
YP_002816267.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_002816268.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816269.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00395; match to protein family HMM PF01510
YP_002816270.1	identified by match to protein family HMM PF05738; match to protein family HMM TIGR01167
YP_002816271.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR01484
YP_002816272.1	responsible for recognizing base lesions in the genome and initiating base excision DNA repair
YP_002816273.1	identified by glimmer; putative
YP_002816274.1	identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252
YP_002816275.1	catalyzes the formation of 2-acetolactate from pyruvate in stationary phase
YP_002816276.1	identified by match to protein family HMM PF08006
YP_002816278.1	identified by match to protein family HMM PF06133
YP_002816279.1	identified by match to protein family HMM PF04286
YP_002816283.1	identified by match to protein family HMM PF00269
YP_002816284.1	identified by match to protein family HMM PF00005
YP_002816285.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_002816286.1	identified by match to protein family HMM PF00497
YP_002816287.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005
YP_002816288.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00664
YP_002816289.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_002816290.1	identified by match to protein family HMM PF00171
YP_002816292.1	identified by match to protein family HMM PF01177; match to protein family HMM TIGR00067
YP_002816293.1	identified by match to protein family HMM PF00324
YP_002816294.1	identified by match to protein family HMM PF05975
YP_002816295.1	identified by match to protein family HMM PF00199; match to protein family HMM PF06628
YP_002816296.1	identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382
YP_002816297.1	identified by glimmer; putative
YP_002816298.1	identified by match to protein family HMM PF07690
YP_002816299.1	identified by match to protein family HMM PF00496
YP_002816300.1	identified by match to protein family HMM PF02525
YP_002816301.1	identified by match to protein family HMM PF07366
YP_002816302.1	identified by match to protein family HMM PF01047; match to protein family HMM PF01638
YP_002816303.1	identified by match to protein family HMM PF00083; match to protein family HMM PF05978; match to protein family HMM PF07690
YP_002816304.1	identified by match to protein family HMM PF00440
YP_002816305.1	identified by match to protein family HMM PF00893
YP_002816306.1	identified by match to protein family HMM PF00893
YP_002816307.1	catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate
YP_002816308.1	identified by match to protein family HMM PF01037
YP_002816309.1	identified by match to protein family HMM PF00892; match to protein family HMM PF03151
YP_002816312.1	identified by match to protein family HMM PF07681
YP_002816313.1	identified by match to protein family HMM PF05913
YP_002816314.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378
YP_002816315.1	catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway
YP_002816316.1	identified by match to protein family HMM PF01380; match to protein family HMM PF01418
YP_002816317.1	identified by glimmer; putative
YP_002816318.1	identified by match to protein family HMM PF00999; match to protein family HMM TIGR00932
YP_002816319.1	identified by match to protein family HMM PF00324
YP_002816320.1	identified by glimmer; putative
YP_002816322.1	identified by match to protein family HMM PF00041; match to protein family HMM PF00149
YP_002816323.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002816324.1	identified by glimmer; putative
YP_002816325.1	identified by glimmer; putative
YP_002816326.1	identified by match to protein family HMM PF09335
YP_002816327.1	identified by match to protein family HMM PF06803
YP_002816328.1	identified by match to protein family HMM PF02735; match to protein family HMM TIGR02772
YP_002816333.1	identified by match to protein family HMM PF05067
YP_002816334.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_002816335.1	identified by match to protein family HMM PF00528
YP_002816336.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816337.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816338.1	identified by match to protein family HMM PF09529; match to protein family HMM TIGR02206
YP_002816339.1	identified by match to protein family HMM TIGR01730
YP_002816340.1	identified by match to protein family HMM PF00005
YP_002816341.1	identified by match to protein family HMM PF02687
YP_002816342.1	identified by match to protein family HMM PF06347; match to protein family HMM PF06725; match to protein family HMM PF08239
YP_002816343.1	identified by match to protein family HMM PF05913
YP_002816344.1	identified by glimmer; putative
YP_002816345.1	identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410
YP_002816346.1	identified by match to protein family HMM PF02302
YP_002816347.1	identified by match to protein family HMM PF02255
YP_002816348.1	identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279
YP_002816349.1	identified by match to protein family HMM PF05913
YP_002816350.1	identified by match to protein family HMM PF07690
YP_002816351.1	identified by glimmer; putative
YP_002816352.1	identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704
YP_002816353.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02823
YP_002816354.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_002816355.1	identified by glimmer; putative
YP_002816356.1	identified by match to protein family HMM PF01925
YP_002816357.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002816358.1	identified by match to protein family HMM PF00581
YP_002816359.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00581
YP_002816360.1	identified by match to protein family HMM PF01206
YP_002816361.1	identified by match to protein family HMM PF00753
YP_002816362.1	identified by match to protein family HMM PF00581; match to protein family HMM PF01206
YP_002816363.1	identified by match to protein family HMM PF02583
YP_002816364.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR03385
YP_002816365.1	identified by glimmer; putative
YP_002816366.1	identified by glimmer; putative
YP_002816367.1	identified by match to protein family HMM PF01047
YP_002816369.1	identified by glimmer; putative
YP_002816370.1	identified by match to protein family HMM PF04293
YP_002816371.1	identified by match to protein family HMM PF00881
YP_002816372.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816373.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816374.1	identified by match to protein family HMM PF03323
YP_002816375.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_002816376.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816377.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03845
YP_002816380.1	identified by match to protein family HMM PF02600
YP_002816381.1	identified by match to protein family HMM PF00085
YP_002816382.1	identified by match to protein family HMM PF07561
YP_002816383.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_002816384.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01996
YP_002816385.1	identified by match to protein family HMM PF00251; match to protein family HMM PF08244; match to protein family HMM TIGR01322
YP_002816386.1	identified by match to protein family HMM PF00294
YP_002816387.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816388.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816389.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816390.1	identified by match to protein family HMM PF00106
YP_002816391.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_002816392.1	identified by glimmer; putative
YP_002816393.1	identified by match to protein family HMM PF01734
YP_002816394.1	identified by match to protein family HMM PF01047
YP_002816395.1	identified by match to protein family HMM PF07690
YP_002816396.1	identified by match to protein family HMM PF00582; match to protein family HMM PF02702
YP_002816397.1	one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex
YP_002816398.1	One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_002816399.1	catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions
YP_002816400.1	identified by glimmer; putative
YP_002816401.1	identified by glimmer; putative
YP_002816402.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative
YP_002816403.1	catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine
YP_002816404.1	catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways
YP_002816405.1	functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate
YP_002816406.1	with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate
YP_002816407.1	identified by match to protein family HMM PF01266; match to protein family HMM TIGR02352
YP_002816408.1	regulates the production of extracellular enzymes
YP_002816409.1	identified by match to protein family HMM PF09084
YP_002816410.1	identified by match to protein family HMM PF00528
YP_002816411.1	identified by match to protein family HMM PF00005
YP_002816412.1	identified by match to protein family HMM PF03070
YP_002816413.1	identified by match to protein family HMM PF01551; match to protein family HMM PF08239
YP_002816415.1	identified by glimmer; putative
YP_002816416.1	identified by glimmer; putative
YP_002816417.1	identified by match to protein family HMM PF00571
YP_002816418.1	identified by match to protein family HMM PF00873
YP_002816420.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974
YP_002816421.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138
YP_002816422.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002816423.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM TIGR02136
YP_002816424.1	identified by match to protein family HMM PF04023
YP_002816425.1	identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231
YP_002816426.1	identified by match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670
YP_002816427.1	identified by glimmer; putative
YP_002816428.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_002816429.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_002816430.1	identified by match to protein family HMM PF03323
YP_002816431.1	identified by match to protein family HMM PF00474
YP_002816433.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_002816435.1	identified by match to protein family HMM PF02790; match to protein family HMM TIGR01432
YP_002816436.1	identified by match to protein family HMM PF00115; match to protein family HMM TIGR02882
YP_002816437.1	identified by match to protein family HMM PF00510; match to protein family HMM TIGR02897
YP_002816438.1	identified by match to protein family HMM PF03626; match to protein family HMM TIGR02901
YP_002816439.1	identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254
YP_002816440.1	identified by glimmer; putative
YP_002816441.1	identified by match to protein family HMM PF00583
YP_002816442.1	identified by glimmer; putative
YP_002816443.1	identified by match to protein family HMM PF01381
YP_002816444.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_002816445.1	identified by match to protein family HMM PF00324
YP_002816448.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_002816449.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_002816450.1	identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076
YP_002816452.1	identified by match to protein family HMM PF01381
YP_002816453.1	identified by match to protein family HMM PF06725
YP_002816454.1	identified by match to protein family HMM PF00015
YP_002816455.1	phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell
YP_002816456.1	identified by glimmer; putative
YP_002816457.1	identified by match to protein family HMM PF04892
YP_002816458.1	identified by match to protein family HMM PF01565; match to protein family HMM PF04030; match to protein family HMM TIGR01679
YP_002816460.1	identified by match to protein family HMM PF03372; match to protein family HMM TIGR03395
YP_002816461.1	identified by match to protein family HMM PF00882
YP_002816462.1	identified by match to protein family HMM PF07885
YP_002816463.1	identified by match to protein family HMM PF00107; match to protein family HMM PF08240
YP_002816464.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002816466.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05547; match to protein family HMM TIGR03296
YP_002816467.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816468.1	similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity
YP_002816469.1	identified by match to protein family HMM PF00532
YP_002816470.1	identified by match to protein family HMM PF02653
YP_002816471.1	identified by match to protein family HMM PF00005
YP_002816472.1	cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source
YP_002816473.1	identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152
YP_002816474.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_002816475.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816476.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_002816477.1	identified by match to protein family HMM PF01047
YP_002816478.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881
YP_002816479.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_002816480.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352
YP_002816481.1	identified by match to protein family HMM PF00528
YP_002816482.1	identified by match to protein family HMM PF00528
YP_002816483.1	identified by match to protein family HMM PF00496
YP_002816484.1	identified by glimmer; putative
YP_002816485.1	identified by match to protein family HMM PF00582
YP_002816486.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_002816488.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002816489.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002816490.1	identified by match to protein family HMM PF01872
YP_002816491.1	identified by match to protein family HMM PF08279
YP_002816492.1	identified by glimmer; putative
YP_002816493.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_002816494.1	identified by match to protein family HMM PF01230
YP_002816495.1	identified by match to protein family HMM PF02566
YP_002816496.1	identified by match to protein family HMM PF00324
YP_002816497.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_002816498.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_002816499.1	identified by match to protein family HMM PF00497
YP_002816500.1	identified by match to protein family HMM PF00005
YP_002816501.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_002816502.1	identified by match to protein family HMM PF01636
YP_002816503.1	identified by match to protein family HMM PF02517
YP_002816504.1	identified by match to protein family HMM PF03323
YP_002816505.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_002816506.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_002816507.1	identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403
YP_002816508.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992
YP_002816509.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404
YP_002816510.1	identified by match to protein family HMM PF00324; match to protein family HMM PF03222
YP_002816511.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_002816512.1	identified by glimmer; putative
YP_002816513.1	identified by glimmer; putative
YP_002816514.1	catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol)
YP_002816515.1	identified by match to protein family HMM PF07726; match to protein family HMM PF07728
YP_002816517.1	identified by match to protein family HMM PF00293
YP_002816518.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993
YP_002816519.1	catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine
YP_002816520.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002816521.1	identified by match to protein family HMM PF00005
YP_002816522.1	identified by match to protein family HMM PF01032
YP_002816523.1	identified by match to protein family HMM PF01032
YP_002816524.1	identified by match to protein family HMM PF01497
YP_002816525.1	identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924
YP_002816526.1	SASP H; spore coat; expressed in forespore compartment
YP_002816527.1	identified by match to protein family HMM PF01022
YP_002816528.1	identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795
YP_002816529.1	catalyzes the formation of fumarate from aspartate
YP_002816530.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01595
YP_002816531.1	identified by match to protein family HMM PF00903
YP_002816532.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804
YP_002816533.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_002816534.1	identified by match to protein family HMM PF04294
YP_002816535.1	identified by glimmer; putative
YP_002816537.1	identified by match to protein family HMM PF09335
YP_002816538.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504
YP_002816539.1	identified by glimmer; putative
YP_002816540.1	identified by match to protein family HMM PF00515; match to protein family HMM PF01381; match to protein family HMM PF07719
YP_002816541.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate
YP_002816542.1	identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525
YP_002816543.1	identified by match to protein family HMM PF01022
YP_002816544.1	identified by match to protein family HMM PF00324; match to protein family HMM PF03845
YP_002816545.1	identified by match to protein family HMM PF01262; match to protein family HMM PF01488; match to protein family HMM PF05222; match to protein family HMM TIGR00518
YP_002816546.1	identified by match to protein family HMM PF03009
YP_002816547.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF07849
YP_002816548.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002816549.1	identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591
YP_002816550.1	involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth
YP_002816551.1	identified by match to protein family HMM PF00583
YP_002816553.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002816554.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002816555.1	identified by match to protein family HMM PF00583
YP_002816556.1	identified by match to protein family HMM PF00155; match to protein family HMM PF00392
YP_002816557.1	identified by match to protein family HMM PF00892
YP_002816559.1	identified by match to protein family HMM PF00390; match to protein family HMM PF03949
YP_002816560.1	identified by match to protein family HMM PF03390
YP_002816561.1	identified by match to protein family HMM PF00072
YP_002816562.1	C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration
YP_002816563.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_002816565.1	identified by glimmer; putative
YP_002816566.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002816567.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002816568.1	identified by match to protein family HMM PF00149
YP_002816569.1	identified by match to protein family HMM PF01547
YP_002816570.1	identified by match to protein family HMM PF00528
YP_002816571.1	identified by match to protein family HMM PF00528
YP_002816572.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08402
YP_002816573.1	identified by match to protein family HMM PF04309
YP_002816574.1	identified by match to protein family HMM PF00023
YP_002816577.1	identified by match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM PF06808; match to protein family HMM TIGR00784
YP_002816578.1	identified by match to protein family HMM PF00072
YP_002816579.1	identified by match to protein family HMM PF02518
YP_002816580.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_002816581.1	identified by match to protein family HMM PF01145
YP_002816582.1	identified by match to protein family HMM PF01957
YP_002816583.1	identified by match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453
YP_002816584.1	identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842
YP_002816585.1	identified by match to protein family HMM PF00583
YP_002816586.1	identified by match to protein family HMM PF00560; match to protein family HMM PF00746; match to protein family HMM PF05031; match to protein family HMM TIGR01167
YP_002816587.1	identified by match to protein family HMM PF04285; match to protein family HMM TIGR02877
YP_002816588.1	identified by match to protein family HMM PF06798; match to protein family HMM PF08298
YP_002816589.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_002816590.1	identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185
YP_002816592.1	identified by match to protein family HMM PF00037; match to protein family HMM PF03130; match to protein family HMM PF08331; match to protein family HMM TIGR00276
YP_002816593.1	identified by match to protein family HMM PF01323
YP_002816594.1	identified by match to protein family HMM PF00912
YP_002816595.1	identified by match to protein family HMM PF00293
YP_002816596.1	identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033
YP_002816599.1	identified by match to protein family HMM PF01475
YP_002816600.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_002816601.1	identified by match to protein family HMM PF07885
YP_002816602.1	identified by match to protein family HMM PF06182
YP_002816603.1	identified by match to protein family HMM PF06182
YP_002816604.1	identified by match to protein family HMM PF00005
YP_002816605.1	converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate
YP_002816606.1	identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898
YP_002816607.1	identified by match to protein family HMM PF06081
YP_002816608.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_002816609.1	identified by match to protein family HMM PF04167
YP_002816610.1	identified by glimmer; putative
YP_002816612.1	identified by glimmer; putative
YP_002816613.1	identified by match to protein family HMM PF04259; match to protein family HMM TIGR01442
YP_002816615.1	identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084
YP_002816616.1	identified by match to protein family HMM PF04307
YP_002816618.1	SASP K; found in the forespore compartment
YP_002816619.1	identified by glimmer; putative
YP_002816620.1	identified by match to protein family HMM PF08838
YP_002816621.1	binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities
YP_002816622.1	identified by match to protein family HMM PF01370; match to protein family HMM PF08338; match to protein family HMM TIGR01777
YP_002816623.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969
YP_002816626.1	processive; catalyzes the formation of mono-, di- and tri-glucosyldiacylglycerol by the progressive transfer of glucosyl residues to diacylglycerol; involved in the formation of membrane glycolipids
YP_002816627.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493
YP_002816628.1	identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255
YP_002816629.1	identified by match to protein family HMM PF00535
YP_002816630.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993
YP_002816631.1	identified by match to protein family HMM PF00984; match to protein family HMM PF03720
YP_002816632.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816633.1	identified by match to protein family HMM PF00535
YP_002816635.1	identified by glimmer; putative
YP_002816636.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816637.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00144
YP_002816638.1	identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998
YP_002816639.1	identified by glimmer; putative
YP_002816640.1	catalyzes the formation of glutamate from glutamine
YP_002816642.1	identified by glimmer; putative
YP_002816643.1	identified by match to protein family HMM TIGR02840
YP_002816644.1	identified by match to protein family HMM PF01381; match to protein family HMM PF06803
YP_002816645.1	catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine
YP_002816646.1	identified by match to protein family HMM PF00324
YP_002816647.1	identified by match to protein family HMM PF00364
YP_002816648.1	identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728
YP_002816649.1	identified by glimmer; putative
YP_002816650.1	mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability
YP_002816651.1	identified by glimmer; putative
YP_002816652.1	identified by match to protein family HMM PF01183
YP_002816653.1	identified by glimmer; putative
YP_002816656.1	identified by match to protein family HMM TIGR01665
YP_002816657.1	identified by glimmer; putative
YP_002816658.1	identified by glimmer; putative
YP_002816659.1	identified by match to protein family HMM TIGR01633
YP_002816663.1	identified by match to protein family HMM TIGR01603
YP_002816666.1	identified by match to protein family HMM TIGR01563
YP_002816667.1	identified by match to protein family HMM TIGR01560
YP_002816668.1	identified by glimmer; putative
YP_002816669.1	identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554
YP_002816670.1	identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543
YP_002816671.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816672.1	identified by match to protein family HMM PF03354
YP_002816674.1	identified by glimmer; putative
YP_002816676.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002816677.1	identified by match to protein family HMM TIGR01637
YP_002816678.1	identified by glimmer; putative
YP_002816679.1	identified by glimmer; putative
YP_002816680.1	identified by glimmer; putative
YP_002816681.1	identified by glimmer; putative
YP_002816682.1	identified by glimmer; putative
YP_002816684.1	identified by glimmer; putative
YP_002816685.1	identified by glimmer; putative
YP_002816688.1	identified by glimmer; putative
YP_002816689.1	identified by match to protein family HMM PF03819
YP_002816691.1	identified by glimmer; putative
YP_002816692.1	identified by glimmer; putative
YP_002816693.1	identified by match to protein family HMM PF01695
YP_002816694.1	identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446
YP_002816695.1	identified by glimmer; putative
YP_002816696.1	identified by glimmer; putative
YP_002816698.1	identified by match to protein family HMM PF01381
YP_002816699.1	identified by match to protein family HMM PF01381
YP_002816700.1	identified by glimmer; putative
YP_002816701.1	identified by glimmer; putative
YP_002816703.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by glimmer; putative
YP_002816704.1	identified by glimmer; putative
YP_002816705.1	identified by glimmer; putative
YP_002816706.1	identified by match to protein family HMM PF00589
YP_002816707.1	identified by match to protein family HMM PF05636
YP_002816708.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05362
YP_002816709.1	identified by match to protein family HMM PF01734
YP_002816710.1	identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871
YP_002816711.1	Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA
YP_002816712.1	identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095
YP_002816713.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816714.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816716.1	identified by match to protein family HMM PF07050
YP_002816717.1	identified by match to protein family HMM PF00300
YP_002816720.1	identified by match to protein family HMM PF00188
YP_002816721.1	identified by match to protein family HMM PF08868
YP_002816722.1	formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate
YP_002816723.1	identified by match to protein family HMM PF09678; match to protein family HMM TIGR02737
YP_002816724.1	identified by match to protein family HMM PF03626; match to protein family HMM TIGR02908
YP_002816725.1	identified by match to protein family HMM PF00510
YP_002816726.1	identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891
YP_002816727.1	identified by match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF02790; match to protein family HMM TIGR02866
YP_002816728.1	converts protoheme IX and farnesyl diphosphate to heme O
YP_002816729.1	identified by match to protein family HMM PF02628
YP_002816730.1	biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate
YP_002816731.1	identified by match to protein family HMM PF01098
YP_002816732.1	depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; putative ligand binding protein
YP_002816734.1	identified by match to protein family HMM PF02562
YP_002816735.1	identified by match to protein family HMM PF01243
YP_002816737.1	identified by glimmer; putative
YP_002816739.1	identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394
YP_002816740.1	identified by glimmer; putative
YP_002816741.1	identified by match to protein family HMM PF00459
YP_002816743.1	identified by match to protein family HMM PF06335
YP_002816744.1	identified by match to protein family HMM PF05256
YP_002816745.1	identified by match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711
YP_002816746.1	involved in assembly of spore coat proteins such as GerQ by catalyzing epsilon-(gamma-glutamyl)lysine cross links
YP_002816747.1	identified by glimmer; putative
YP_002816749.1	identified by glimmer; putative
YP_002816751.1	identified by glimmer; putative
YP_002816752.1	E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_002816753.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_002816754.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_002816755.1	identified by match to protein family HMM PF00676; match to protein family HMM TIGR03181
YP_002816756.1	identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732
YP_002816757.1	cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+)
YP_002816758.1	identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_002816759.1	identified by match to protein family HMM PF07288
YP_002816760.1	identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649
YP_002816761.1	identified by match to protein family HMM PF02080; match to protein family HMM PF02254
YP_002816763.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891
YP_002816764.1	identified by match to protein family HMM PF00132; match to protein family HMM PF08503; match to protein family HMM TIGR03532
YP_002816765.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002816766.1	identified by match to protein family HMM PF00571
YP_002816768.1	identified by match to protein family HMM PF04308
YP_002816769.1	identified by glimmer; putative
YP_002816770.1	identified by match to protein family HMM PF08796
YP_002816771.1	identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196
YP_002816772.1	identified by glimmer; putative
YP_002816773.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002816774.1	identified by match to protein family HMM PF00563
YP_002816775.1	identified by match to protein family HMM PF00106
YP_002816776.1	identified by match to protein family HMM PF00149
YP_002816777.1	identified by glimmer; putative
YP_002816778.1	catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate
YP_002816779.1	identified by match to protein family HMM PF02541
YP_002816782.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002816784.1	identified by glimmer; putative
YP_002816785.1	identified by glimmer; putative
YP_002816786.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_002816787.1	identified by match to protein family HMM PF03551
YP_002816788.1	catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine
YP_002816792.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002816793.1	identified by glimmer; putative
YP_002816794.1	identified by match to protein family HMM PF00155
YP_002816795.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_002816796.1	identified by glimmer; putative
YP_002816797.1	identified by match to protein family HMM PF00528
YP_002816798.1	identified by match to protein family HMM PF00528
YP_002816799.1	identified by match to protein family HMM PF01547
YP_002816800.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02903
YP_002816801.1	identified by match to protein family HMM PF00128
YP_002816802.1	identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402
YP_002816803.1	identified by match to protein family HMM PF00106
YP_002816804.1	identified by match to protein family HMM PF06271
YP_002816808.1	identified by match to protein family HMM PF02463
YP_002816809.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis
YP_002816810.1	identified by match to protein family HMM PF00293
YP_002816811.1	identified by glimmer; putative
YP_002816812.1	identified by glimmer; putative
YP_002816816.1	identified by match to protein family HMM PF03551
YP_002816817.1	catalyzes the formation of acetoacetate from 3-hydroxybutyrate
YP_002816819.1	isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway
YP_002816820.1	phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway
YP_002816821.1	identified by match to protein family HMM PF00795
YP_002816822.1	produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however
YP_002816823.1	converts 2,3-diketo-5-methylthiopentyl-1-phosphate into 2-hydroxy 3-keto-5-methylthiopentenyl-1-phosphate; involved in methionine salvage
YP_002816824.1	converts 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate to 1,2-dihydroxy-3-keto-5-methylthiopentene; involved in methionine salvage
YP_002816825.1	converts methylthioribulose-1-phosphate into 2,3-diketo-5-methylthiopentyl-1-phosphate; involved in methionine salvage
YP_002816826.1	identified by match to protein family HMM PF03079; match to protein family HMM PF07883
YP_002816827.1	identified by glimmer; putative
YP_002816828.1	identified by glimmer; putative
YP_002816829.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816830.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03446
YP_002816831.1	identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254
YP_002816832.1	identified by match to protein family HMM PF00881
YP_002816833.1	identified by glimmer; putative
YP_002816834.1	identified by glimmer; putative
YP_002816835.1	identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417
YP_002816836.1	identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_002816837.1	identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002
YP_002816838.1	identified by match to protein family HMM PF00874; match to protein family HMM PF03123
YP_002816839.1	identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_002816840.1	identified by match to protein family HMM PF07702
YP_002816841.1	catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate
YP_002816842.1	identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00221
YP_002816843.1	identified by match to protein family HMM PF00753
YP_002816844.1	functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer
YP_002816845.1	functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB
YP_002816846.1	identified by match to protein family HMM PF03745
YP_002816847.1	identified by match to protein family HMM PF00583
YP_002816848.1	identified by glimmer; putative
YP_002816849.1	identified by match to protein family HMM PF00160
YP_002816850.1	identified by match to protein family HMM PF06207
YP_002816851.1	identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_002816852.1	identified by match to protein family HMM PF03323
YP_002816854.1	identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839
YP_002816855.1	identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845
YP_002816856.1	identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838
YP_002816859.1	identified by glimmer; putative
YP_002816860.1	identified by match to protein family HMM PF00209
YP_002816861.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore.
YP_002816862.1	binds to sigma F preventing its association with RNA polymerase during sporulation
YP_002816863.1	identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886
YP_002816864.1	identified by match to protein family HMM PF00768; match to protein family HMM PF07943
YP_002816865.1	identified by match to protein family HMM PF00392; match to protein family HMM PF02082
YP_002816866.1	identified by match to protein family HMM PF00005
YP_002816868.1	identified by glimmer; putative
YP_002816869.1	identified by match to protein family HMM PF01047
YP_002816870.1	identified by match to protein family HMM PF04402
YP_002816871.1	identified by match to protein family HMM PF00860; match to protein family HMM PF00916
YP_002816872.1	identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383
YP_002816873.1	Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway
YP_002816874.1	catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation
YP_002816875.1	catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose
YP_002816877.1	site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs
YP_002816879.1	identified by match to protein family HMM PF01475
YP_002816880.1	identified by match to protein family HMM PF01944; match to protein family HMM TIGR02831
YP_002816881.1	identified by match to protein family HMM PF00583
YP_002816882.1	identified by match to protein family HMM PF00293
YP_002816883.1	identified by glimmer; putative
YP_002816884.1	identified by match to protein family HMM PF00248
YP_002816885.1	identified by match to protein family HMM PF00248
YP_002816886.1	identified by match to protein family HMM PF04229
YP_002816888.1	identified by match to protein family HMM PF00149; match to protein family HMM PF02872
YP_002816890.1	identified by match to protein family HMM PF00561
YP_002816891.1	identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM PF06808
YP_002816892.1	identified by match to protein family HMM PF00356
YP_002816893.1	identified by match to protein family HMM PF00583
YP_002816896.1	identified by match to protein family HMM PF09360
YP_002816897.1	identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326
YP_002816898.1	catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine
YP_002816899.1	bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate
YP_002816900.1	RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not
YP_002816902.1	catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine
YP_002816903.1	identified by match to protein family HMM PF05401; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR02072
YP_002816904.1	identified by match to protein family HMM PF00561
YP_002816905.1	catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine
YP_002816906.1	DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium
YP_002816907.1	catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate
YP_002816908.1	identified by glimmer; putative
YP_002816909.1	identified by glimmer; putative
YP_002816910.1	identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM TIGR00931
YP_002816911.1	in Escherichia coli this is a periplasmic enzyme while in gram positive organisms it may be anchored at the cell surface; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate
YP_002816912.1	identified by match to protein family HMM PF00657
YP_002816913.1	identified by match to protein family HMM PF01047
YP_002816914.1	identified by glimmer; putative
YP_002816915.1	identified by glimmer; putative
YP_002816916.1	catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation
YP_002816917.1	identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707
YP_002816918.1	catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate
YP_002816919.1	bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate
YP_002816920.1	catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate
YP_002816921.1	identified by glimmer; putative
YP_002816922.1	identified by match to protein family HMM PF00106; match to protein family HMM PF08659
YP_002816923.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816924.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002816925.1	catalyzes the formation of L-proline from pyrroline-5-carboxylate
YP_002816926.1	identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718
YP_002816927.1	identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719
YP_002816928.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002816929.1	member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions
YP_002816930.1	identified by glimmer; putative
YP_002816931.1	involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function
YP_002816932.1	identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01883
YP_002816933.1	identified by match to protein family HMM PF00583
YP_002816934.1	identified by glimmer; putative
YP_002816935.1	identified by match to protein family HMM PF03734
YP_002816936.1	identified by match to protein family HMM PF06081
YP_002816937.1	identified by match to protein family HMM PF00005
YP_002816938.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726
YP_002816939.1	identified by match to protein family HMM PF00497; match to protein family HMM PF04069
YP_002816940.1	identified by glimmer; putative
YP_002816941.1	identified by match to protein family HMM PF06491
YP_002816943.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00293
YP_002816944.1	identified by match to protein family HMM PF01098
YP_002816945.1	identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817
YP_002816946.1	identified by match to protein family HMM PF02779; match to protein family HMM PF02780
YP_002816947.1	identified by match to protein family HMM PF00676
YP_002816948.1	E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide
YP_002816949.1	catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate
YP_002816950.1	identified by match to protein family HMM PF00208; match to protein family HMM PF02812
YP_002816951.1	catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate
YP_002816952.1	identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_002816954.1	identified by match to protein family HMM PF03009
YP_002816957.1	identified by match to protein family HMM PF00072; match to protein family HMM PF08769; match to protein family HMM TIGR02875
YP_002816958.1	identified by match to protein family HMM PF00595; match to protein family HMM PF05580; match to protein family HMM TIGR02860
YP_002816959.1	identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634
YP_002816960.1	regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes
YP_002816961.1	identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478
YP_002816962.1	catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate
YP_002816963.1	identified by match to protein family HMM PF00348
YP_002816964.1	catalyzes the bidirectional exonucleolytic cleavage of DNA
YP_002816965.1	bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides
YP_002816966.1	catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate
YP_002816967.1	Regulates rRNA biosynthesis by transcriptional antitermination
YP_002816968.1	identified by match to protein family HMM PF03780
YP_002816969.1	an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_002816970.1	composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism
YP_002816972.1	identified by match to protein family HMM TIGR02830
YP_002816973.1	identified by match to protein family HMM PF09581; match to protein family HMM TIGR02896
YP_002816974.1	identified by match to protein family HMM PF09546; match to protein family HMM TIGR02829
YP_002816975.1	identified by match to protein family HMM PF09555; match to protein family HMM TIGR02849
YP_002816976.1	identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848
YP_002816977.1	necessary for complete engulfment of forespore
YP_002816978.1	identified by match to protein family HMM TIGR02858
YP_002816981.1	Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA
YP_002816982.1	identified by match to protein family HMM PF00557; match to protein family HMM PF01321
YP_002816983.1	catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis
YP_002816985.1	identified by match to protein family HMM PF07136
YP_002816987.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509
YP_002816988.1	involved in manganese homeostasis; activates the transcription of the mntABCD operon
YP_002816989.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR00620
YP_002816991.1	identified by glimmer; putative
YP_002816992.1	identified by match to protein family HMM PF03099
YP_002816993.1	identified by match to protein family HMM PF00581
YP_002816994.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_002816995.1	identified by match to protein family HMM PF00440
YP_002816996.1	identified by match to protein family HMM PF00893
YP_002816997.1	identified by match to protein family HMM PF00893
YP_002816998.1	identified by glimmer; putative
YP_002816999.1	identified by glimmer; putative
YP_002817004.1	identified by match to protein family HMM PF00005
YP_002817005.1	identified by match to protein family HMM PF00392
YP_002817008.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein
YP_002817009.1	acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein
YP_002817010.1	catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein
YP_002817011.1	identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851
YP_002817013.1	identified by glimmer; putative
YP_002817014.1	identified by glimmer; putative
YP_002817018.1	catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis
YP_002817019.1	identified by glimmer; putative
YP_002817020.1	identified by match to protein family HMM PF03171
YP_002817021.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817022.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_002817023.1	identified by glimmer; putative
YP_002817024.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_002817025.1	identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532
YP_002817026.1	identified by match to protein family HMM PF00482
YP_002817027.1	identified by match to protein family HMM PF00437
YP_002817030.1	identified by match to protein family HMM PF00375
YP_002817031.1	identified by glimmer; putative
YP_002817032.1	identified by glimmer; putative
YP_002817034.1	identified by glimmer; putative
YP_002817035.1	identified by glimmer; putative
YP_002817036.1	identified by glimmer; putative
YP_002817037.1	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis
YP_002817038.1	identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082
YP_002817039.1	catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions
YP_002817040.1	catalyzes the formation of cysteine from cystathionine; in B. subtilis also has O-acetylhomoserine thiolyase activity
YP_002817041.1	catalyzes the formation of L-homocysteine from cystathionine
YP_002817042.1	identified by match to protein family HMM PF00857
YP_002817043.1	identified by match to protein family HMM PF01022
YP_002817044.1	identified by match to protein family HMM PF02636
YP_002817045.1	identified by match to protein family HMM PF00753
YP_002817047.1	identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744
YP_002817048.1	identified by match to protein family HMM PF06014
YP_002817049.1	identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727
YP_002817050.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_002817051.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817052.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM PF02878
YP_002817053.1	identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135
YP_002817054.1	ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation
YP_002817055.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974
YP_002817056.1	identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138
YP_002817057.1	identified by match to protein family HMM TIGR02136
YP_002817058.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_002817059.1	identified by match to protein family HMM PF07690
YP_002817060.1	identified by match to protein family HMM PF00081; match to protein family HMM PF02777
YP_002817061.1	identified by match to protein family HMM PF06691
YP_002817063.1	catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis
YP_002817064.1	identified by match to protein family HMM PF01475
YP_002817065.1	identified by match to protein family HMM PF00950; match to protein family HMM PF01032
YP_002817066.1	identified by match to protein family HMM PF00005
YP_002817067.1	identified by match to protein family HMM PF02588
YP_002817069.1	Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues
YP_002817070.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271
YP_002817071.1	identified by glimmer; putative
YP_002817073.1	catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway
YP_002817074.1	identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486
YP_002817075.1	identified by match to protein family HMM PF04816
YP_002817076.1	identified by match to protein family HMM PF00034
YP_002817077.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium
YP_002817078.1	synthesizes RNA primers at the replication forks
YP_002817079.1	identified by glimmer; putative
YP_002817080.1	identified by glimmer; putative
YP_002817081.1	identified by match to protein family HMM PF03618
YP_002817082.1	identified by match to protein family HMM PF00571; match to protein family HMM PF08220; match to protein family HMM PF08279
YP_002817083.1	involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA
YP_002817085.1	Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome
YP_002817086.1	Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis
YP_002817087.1	identified by match to protein family HMM PF01219
YP_002817088.1	identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043
YP_002817089.1	identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277
YP_002817090.1	identified by match to protein family HMM PF02562
YP_002817091.1	identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876
YP_002817092.1	identified by match to protein family HMM PF07241; match to protein family HMM TIGR02856
YP_002817093.1	identified by match to protein family HMM PF09424
YP_002817094.1	a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA
YP_002817095.1	identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579
YP_002817096.1	in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase
YP_002817097.1	methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype
YP_002817098.1	chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion
YP_002817099.1	heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria
YP_002817100.1	with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor
YP_002817101.1	Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
YP_002817102.1	catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
YP_002817103.1	identified by match to protein family HMM PF01638
YP_002817104.1	binds to the ribosome on the universally-conserved alpha-sarcin loop
YP_002817106.1	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
YP_002817107.1	binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase
YP_002817108.1	required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA
YP_002817110.1	identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361
YP_002817111.1	identified by glimmer; putative
YP_002817112.1	identified by match to protein family HMM PF00383; match to protein family HMM TIGR02571
YP_002817113.1	identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426
YP_002817114.1	may be involved in regulation of competence genes
YP_002817115.1	identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002817116.1	identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090
YP_002817117.1	identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488
YP_002817118.1	transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria
YP_002817119.1	identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253
YP_002817120.1	AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate
YP_002817121.1	in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis
YP_002817122.1	identified by match to protein family HMM PF09419; match to protein family HMM TIGR01662; match to protein family HMM TIGR01668
YP_002817124.1	catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine
YP_002817125.1	sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment
YP_002817126.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817127.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817128.1	identified by match to protein family HMM PF03413
YP_002817129.1	in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif
YP_002817130.1	identified by match to protein family HMM PF00881
YP_002817131.1	identified by glimmer; putative
YP_002817132.1	identified by match to protein family HMM PF04607
YP_002817134.1	identified by match to protein family HMM PF00245
YP_002817136.1	identified by match to protein family HMM PF00583
YP_002817137.1	identified by match to protein family HMM PF00561
YP_002817138.1	identified by match to protein family HMM PF04173; match to protein family HMM PF07681
YP_002817140.1	identified by match to protein family HMM PF00300
YP_002817141.1	identified by glimmer; putative
YP_002817142.1	identified by glimmer; putative
YP_002817144.1	identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF05922
YP_002817145.1	phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin
YP_002817146.1	identified by match to protein family HMM PF01329
YP_002817147.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817148.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00903
YP_002817149.1	identified by match to protein family HMM PF07681
YP_002817150.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_002817151.1	identified by match to protein family HMM PF01575
YP_002817152.1	identified by match to protein family HMM PF00583
YP_002817153.1	identified by match to protein family HMM PF00583
YP_002817155.1	identified by match to protein family HMM PF00005
YP_002817156.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01032
YP_002817157.1	identified by match to protein family HMM PF01497
YP_002817159.1	identified by match to protein family HMM PF00465
YP_002817160.1	catalyzes the formation of L-homocysteine from cystathionine
YP_002817161.1	identified by match to protein family HMM PF00291
YP_002817162.1	enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine
YP_002817163.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002817164.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817165.1	identified by match to protein family HMM PF07423
YP_002817166.1	identified by match to protein family HMM PF00905; match to protein family HMM PF03717
YP_002817167.1	necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
YP_002817168.1	functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor
YP_002817169.1	identified by match to protein family HMM PF01136
YP_002817170.1	identified by match to protein family HMM PF01136
YP_002817171.1	identified by match to protein family HMM PF01596; match to protein family HMM PF02390
YP_002817172.1	identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247
YP_002817173.1	identified by match to protein family HMM PF06949
YP_002817174.1	similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function
YP_002817175.1	identified by match to protein family HMM PF06135
YP_002817176.1	Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002817177.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817178.1	identified by match to protein family HMM PF01594
YP_002817179.1	identified by glimmer; putative
YP_002817180.1	identified by glimmer; putative
YP_002817182.1	identified by match to protein family HMM TIGR01448
YP_002817183.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_002817184.1	catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs
YP_002817185.1	identified by match to protein family HMM PF00266
YP_002817186.1	identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738
YP_002817187.1	identified by match to protein family HMM PF00004
YP_002817188.1	identified by match to protein family HMM TIGR02894
YP_002817189.1	identified by match to protein family HMM PF00899
YP_002817190.1	catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes
YP_002817191.1	catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG
YP_002817193.1	hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine
YP_002817194.1	identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691
YP_002817195.1	catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis
YP_002817196.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644
YP_002817197.1	identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297
YP_002817198.1	part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF
YP_002817200.1	identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; match to protein family HMM TIGR02900
YP_002817201.1	identified by match to protein family HMM PF04239
YP_002817203.1	member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex
YP_002817204.1	Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr)
YP_002817205.1	Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step
YP_002817207.1	promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration
YP_002817208.1	plays an essential role in ATP-dependent branch migration of the Holliday junction
YP_002817209.1	identified by match to protein family HMM PF01497
YP_002817210.1	identified by match to protein family HMM PF08955; match to protein family HMM PF08977
YP_002817211.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817212.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00892
YP_002817213.1	identified by match to protein family HMM PF01022; match to protein family HMM PF08279
YP_002817214.1	identified by glimmer; putative
YP_002817215.1	identified by match to protein family HMM PF09580
YP_002817216.1	identified by match to protein family HMM PF01476; match to protein family HMM TIGR02899
YP_002817217.1	3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
YP_002817218.1	catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide
YP_002817219.1	catalyzes the formation of oxaloacetate from L-aspartate
YP_002817220.1	catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis
YP_002817221.1	identified by match to protein family HMM PF02829; match to protein family HMM PF08279
YP_002817222.1	identified by match to protein family HMM PF03473; match to protein family HMM PF03475
YP_002817223.1	catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis
YP_002817224.1	identified by match to protein family HMM PF02687
YP_002817225.1	identified by match to protein family HMM PF02687
YP_002817226.1	identified by match to protein family HMM PF00005
YP_002817227.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002817228.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817229.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002817230.1	essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication
YP_002817232.1	involved in the peptidyltransferase reaction during translation
YP_002817233.1	identified by match to protein family HMM PF04327
YP_002817234.1	identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061
YP_002817235.1	identified by match to protein family HMM TIGR00757
YP_002817236.1	identified by match to protein family HMM PF02163
YP_002817237.1	identified by match to protein family HMM PF01551
YP_002817238.1	identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968
YP_002817239.1	blocks the formation of polar Z-ring septums
YP_002817240.1	identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426
YP_002817241.1	in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall
YP_002817242.1	functions in MreBCD complex in some organisms
YP_002817243.1	Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase
YP_002817244.1	Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell
YP_002817246.1	identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499
YP_002817247.1	valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain
YP_002817248.1	identified by match to protein family HMM TIGR02904
YP_002817249.1	identified by match to protein family HMM PF01476; match to protein family HMM TIGR02907
YP_002817250.1	Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway
YP_002817251.1	catalyzes the formation of porphobilinogen from 5-aminolevulinate
YP_002817252.1	catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis
YP_002817253.1	transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis
YP_002817254.1	identified by match to protein family HMM PF01578
YP_002817255.1	catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins
YP_002817256.1	identified by match to protein family HMM PF01047
YP_002817257.1	identified by match to protein family HMM PF02566; match to protein family HMM TIGR03561
YP_002817258.1	binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential
YP_002817259.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00004; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763
YP_002817260.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02190
YP_002817261.1	identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM TIGR02902
YP_002817262.1	binds and unfolds substrates as part of the ClpXP protease
YP_002817263.1	Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer
YP_002817265.1	identified by glimmer; putative
YP_002817267.1	identified by glimmer; putative
YP_002817268.1	identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040
YP_002817269.1	hydrolyzes non-standard nucleotides such as xanthine and inosine
YP_002817270.1	RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
YP_002817272.1	converts L-glutamate to D-glutamate, a component of peptidoglycan
YP_002817273.1	identified by match to protein family HMM PF07690
YP_002817274.1	identified by glimmer; putative
YP_002817275.1	identified by match to protein family HMM PF01965
YP_002817276.1	identified by match to protein family HMM PF00440
YP_002817277.1	identified by match to protein family HMM PF01965
YP_002817278.1	identified by glimmer; putative
YP_002817279.1	identified by match to protein family HMM PF00196; match to protein family HMM PF08281
YP_002817280.1	identified by match to protein family HMM PF00860
YP_002817281.1	identified by match to protein family HMM PF00892
YP_002817282.1	metallo-dependent hydrolase superfamily; deaminase with metallo-dependent hydrolase domain
YP_002817283.1	metallo-dependent hydrolase superfamily; deaminase with metallo-dependent hydrolase domain
YP_002817284.1	identified by match to protein family HMM PF00496
YP_002817285.1	identified by match to protein family HMM PF00528
YP_002817286.1	identified by match to protein family HMM PF00528
YP_002817287.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_002817288.1	identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727
YP_002817289.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF06580
YP_002817290.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00165
YP_002817291.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817292.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817293.1	identified by match to protein family HMM PF04024
YP_002817294.1	identified by match to protein family HMM PF01381; match to protein family HMM PF07883
YP_002817296.1	identified by match to protein family HMM PF00230
YP_002817297.1	identified by match to protein family HMM PF02082
YP_002817299.1	identified by match to protein family HMM PF00005
YP_002817300.1	identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533
YP_002817301.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00691
YP_002817302.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817303.1	With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.
YP_002817304.1	identified by match to protein family HMM PF02557
YP_002817305.1	identified by match to protein family HMM PF03061
YP_002817306.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase
YP_002817307.1	part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol
YP_002817308.1	identified by match to protein family HMM TIGR02046
YP_002817310.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision
YP_002817311.1	identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068
YP_002817312.1	identified by match to protein family HMM PF00766; match to protein family HMM PF01012
YP_002817313.1	identified by match to protein family HMM PF01012
YP_002817314.1	Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA
YP_002817315.1	identified by match to protein family HMM PF00440; match to protein family HMM PF08359
YP_002817316.1	activates fatty acids by binding to coenzyme A
YP_002817317.1	identified by match to protein family HMM PF01391
YP_002817318.1	identified by glimmer; putative
YP_002817319.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01497
YP_002817320.1	part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome
YP_002817321.1	identified by match to protein family HMM PF05163
YP_002817326.1	identified by match to protein family HMM PF00005
YP_002817327.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002817328.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002817329.1	identified by glimmer; putative
YP_002817332.1	identified by match to protein family HMM PF00999
YP_002817333.1	iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source
YP_002817334.1	identified by match to protein family HMM PF07170; match to protein family HMM TIGR03064
YP_002817335.1	identified by match to protein family HMM PF00005
YP_002817336.1	identified by match to protein family HMM PF01032
YP_002817337.1	identified by match to protein family HMM PF01497
YP_002817338.1	identified by match to protein family HMM PF05031; match to protein family HMM TIGR03063
YP_002817339.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF05031
YP_002817340.1	identified by match to protein family HMM PF05031; match to protein family HMM TIGR03063
YP_002817341.1	identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796
YP_002817342.1	identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_002817343.1	MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange
YP_002817344.1	identified by match to protein family HMM PF02811
YP_002817345.1	identified by match to protein family HMM PF02674
YP_002817346.1	identified by match to protein family HMM PF05164
YP_002817347.1	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids
YP_002817350.1	identified by glimmer; putative
YP_002817351.1	catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002817352.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily
YP_002817353.1	catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily
YP_002817354.1	identified by match to protein family HMM PF00588; match to protein family HMM PF08032
YP_002817355.1	identified by match to protein family HMM TIGR03092
YP_002817356.1	identified by match to protein family HMM PF01966
YP_002817357.1	identified by match to protein family HMM PF02517
YP_002817358.1	identified by match to protein family HMM PF02517
YP_002817359.1	identified by glimmer; putative
YP_002817360.1	identified by glimmer; putative
YP_002817361.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711
YP_002817363.1	identified by match to protein family HMM PF00440
YP_002817364.1	identified by match to protein family HMM PF05343
YP_002817365.1	identified by match to protein family HMM PF08761
YP_002817366.1	binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit
YP_002817367.1	identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001
YP_002817368.1	IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits
YP_002817369.1	catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr)
YP_002817370.1	identified by match to protein family HMM PF08812; match to protein family HMM TIGR02834
YP_002817371.1	Primosomal protein that may act to load helicase DnaC during DNA replication
YP_002817372.1	identified by match to protein family HMM PF07261
YP_002817373.1	identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244
YP_002817374.1	Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine
YP_002817375.1	identified by glimmer; putative
YP_002817376.1	NADP-dependent; catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; active during gluconeogenesis
YP_002817377.1	catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis
YP_002817378.1	identified by match to protein family HMM PF02659; match to protein family HMM TIGR02840
YP_002817379.1	Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases
YP_002817380.1	has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair
YP_002817381.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229
YP_002817382.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002817383.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative
YP_002817384.1	identified by glimmer; putative
YP_002817385.1	identified by match to protein family HMM PF01575
YP_002817386.1	Catalyzes the reversible oxidation of malate to oxaloacetate
YP_002817387.1	Converts isocitrate to alpha ketoglutarate
YP_002817388.1	catalyzes the formation of citrate from acetyl-CoA and oxaloacetate
YP_002817389.1	identified by match to protein family HMM PF04284
YP_002817390.1	identified by match to protein family HMM PF01594; match to protein family HMM TIGR02872
YP_002817391.1	F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein
YP_002817392.1	catalyzes the formation of phosphoenolpyruvate from pyruvate
YP_002817393.1	catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis
YP_002817394.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein
YP_002817395.1	catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits
YP_002817396.1	identified by match to protein family HMM PF00392
YP_002817397.1	identified by match to protein family HMM PF00390; match to protein family HMM PF03949
YP_002817398.1	catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.
YP_002817401.1	identified by match to protein family HMM PF01368; match to protein family HMM PF02272
YP_002817404.1	identified by glimmer; putative
YP_002817406.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00571; match to protein family HMM PF03061
YP_002817407.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002817408.1	identified by glimmer; putative
YP_002817409.1	catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins
YP_002817410.1	identified by match to protein family HMM PF00557; match to protein family HMM PF01321
YP_002817415.1	identified by match to protein family HMM PF00583
YP_002817417.1	identified by match to protein family HMM PF00583
YP_002817418.1	identified by match to protein family HMM PF07883
YP_002817419.1	identified by glimmer; putative
YP_002817420.1	identified by match to protein family HMM PF01381
YP_002817421.1	identified by glimmer; putative
YP_002817422.1	identified by match to protein family HMM PF01262; match to protein family HMM PF01488; match to protein family HMM PF05222; match to protein family HMM TIGR00518
YP_002817423.1	catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis
YP_002817424.1	identified by match to protein family HMM PF00582
YP_002817428.1	catalyzes the formation of arginine from (N-L-arginino)succinate
YP_002817429.1	catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming
YP_002817430.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002817431.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002817433.1	identified by match to protein family HMM PF02588
YP_002817435.1	identified by glimmer; putative
YP_002817436.1	identified by match to protein family HMM PF00293
YP_002817437.1	AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA
YP_002817439.1	identified by match to protein family HMM PF00578; match to protein family HMM PF08534
YP_002817440.1	identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874
YP_002817442.1	catalyzes the phosphorylation of NAD to NADP
YP_002817443.1	identified by match to protein family HMM PF07969
YP_002817444.1	identified by match to protein family HMM PF00903; match to protein family HMM PF06983
YP_002817445.1	identified by match to protein family HMM PF00501
YP_002817446.1	identified by match to protein family HMM PF00269
YP_002817447.1	Required for the synthesis of the thiazole moiety
YP_002817448.1	identified by match to protein family HMM PF00266
YP_002817449.1	acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation
YP_002817450.1	identified by glimmer; putative
YP_002817451.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002817452.1	identified by match to protein family HMM PF00892
YP_002817453.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817454.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00440
YP_002817455.1	identified by match to protein family HMM PF01590
YP_002817456.1	catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine
YP_002817457.1	primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination
YP_002817458.1	identified by glimmer; putative
YP_002817460.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_002817461.1	identified by glimmer; putative
YP_002817462.1	identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937
YP_002817464.1	Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA
YP_002817466.1	identified by match to protein family HMM PF00571; match to protein family HMM PF01842
YP_002817467.1	identified by match to protein family HMM PF00850
YP_002817468.1	identified by glimmer; putative
YP_002817469.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002817470.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002817471.1	identified by match to protein family HMM PF00023
YP_002817472.1	identified by match to protein family HMM PF01408
YP_002817473.1	homopentamer; channel that opens in response to pressure or hypoosmotic shock
YP_002817476.1	identified by glimmer; putative
YP_002817478.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481
YP_002817479.1	identified by match to protein family HMM PF07537
YP_002817481.1	identified by match to protein family HMM PF06103
YP_002817482.1	identified by match to protein family HMM PF02073
YP_002817484.1	identified by glimmer; putative
YP_002817485.1	identified by match to protein family HMM PF00583
YP_002817486.1	Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis
YP_002817487.1	catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate
YP_002817488.1	identified by match to protein family HMM PF01580; match to protein family HMM PF09397
YP_002817489.1	identified by glimmer; putative
YP_002817490.1	identified by match to protein family HMM PF01588
YP_002817491.1	identified by match to protein family HMM PF07285
YP_002817492.1	identified by match to protein family HMM PF00085
YP_002817493.1	pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog
YP_002817494.1	identified by match to protein family HMM PF05343
YP_002817495.1	identified by match to protein family HMM PF03413
YP_002817496.1	identified by match to protein family HMM PF00753
YP_002817497.1	tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine
YP_002817499.1	identified by match to protein family HMM PF01636; match to protein family HMM PF02958
YP_002817500.1	identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104
YP_002817501.1	identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258
YP_002817502.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817503.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01546; match to protein family HMM TIGR01887
YP_002817504.1	identified by match to protein family HMM PF08220
YP_002817505.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093
YP_002817506.1	identified by match to protein family HMM PF01943; match to protein family HMM PF03023
YP_002817507.1	identified by match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275
YP_002817508.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002817509.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002817510.1	identified by match to protein family HMM PF01022
YP_002817511.1	identified by match to protein family HMM PF08327
YP_002817512.1	identified by glimmer; putative
YP_002817515.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02559
YP_002817516.1	Converts glucose to D-glucono-1,5 lactone
YP_002817517.1	identified by match to protein family HMM PF06800; match to protein family HMM TIGR00776
YP_002817518.1	identified by glimmer; putative
YP_002817519.1	identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682
YP_002817520.1	identified by match to protein family HMM PF02391
YP_002817521.1	identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176
YP_002817522.1	identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177
YP_002817523.1	MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
YP_002817524.1	catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways
YP_002817525.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002817526.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF04055
YP_002817527.1	identified by match to protein family HMM PF01391
YP_002817528.1	identified by glimmer; putative
YP_002817530.1	identified by match to protein family HMM PF00581
YP_002817531.1	identified by glimmer; putative
YP_002817532.1	catalyzes the formation of O-acetyl -L-homoserine from L-homoserine and acetyl-CoA
YP_002817533.1	identified by glimmer; putative
YP_002817534.1	identified by glimmer; putative
YP_002817535.1	identified by match to protein family HMM PF03323
YP_002817536.1	identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912
YP_002817537.1	identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887
YP_002817538.1	identified by glimmer; putative
YP_002817541.1	identified by glimmer; putative
YP_002817542.1	leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase
YP_002817543.1	identified by match to protein family HMM PF07690
YP_002817544.1	identified by match to protein family HMM PF00999
YP_002817545.1	identified by match to protein family HMM PF02080
YP_002817546.1	identified by match to protein family HMM PF00589
YP_002817547.1	identified by match to protein family HMM PF02687
YP_002817548.1	identified by match to protein family HMM PF00005
YP_002817549.1	identified by match to protein family HMM PF04171; match to protein family HMM PF04235
YP_002817550.1	identified by glimmer; putative
YP_002817552.1	identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212
YP_002817553.1	identified by match to protein family HMM PF06962
YP_002817554.1	identified by match to protein family HMM PF00005
YP_002817556.1	identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035
YP_002817557.1	identified by match to protein family HMM PF03929
YP_002817558.1	identified by glimmer; putative
YP_002817560.1	identified by glimmer; putative
YP_002817562.1	identified by match to protein family HMM PF00132
YP_002817563.1	identified by match to protein family HMM PF01569
YP_002817564.1	identified by match to protein family HMM PF00534
YP_002817566.1	identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177
YP_002817567.1	identified by glimmer; putative
YP_002817569.1	catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase
YP_002817570.1	identified by glimmer; putative
YP_002817571.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817572.1	PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP
YP_002817573.1	identified by match to protein family HMM PF05468
YP_002817574.1	identified by glimmer; putative
YP_002817575.1	identified by match to protein family HMM PF00892
YP_002817577.1	identified by glimmer; putative
YP_002817578.1	identified by match to protein family HMM PF01784
YP_002817579.1	identified by match to protein family HMM PF02518
YP_002817580.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002817581.1	identified by match to protein family HMM PF00561
YP_002817582.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00884
YP_002817583.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817584.1	identified by glimmer; putative
YP_002817585.1	identified by glimmer; putative
YP_002817587.1	identified by match to protein family HMM PF00005
YP_002817588.1	identified by match to protein family HMM PF00528
YP_002817589.1	identified by glimmer; putative
YP_002817590.1	identified by glimmer; putative
YP_002817591.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002817593.1	identified by match to protein family HMM PF00293; match to protein family HMM TIGR02705
YP_002817595.1	identified by glimmer; putative
YP_002817597.1	catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2
YP_002817598.1	identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278
YP_002817599.1	identified by match to protein family HMM PF00484
YP_002817600.1	identified by match to protein family HMM PF01654
YP_002817601.1	identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203
YP_002817603.1	identified by glimmer; putative
YP_002817604.1	identified by match to protein family HMM PF00395; match to protein family HMM PF05901
YP_002817605.1	identified by match to protein family HMM PF02698
YP_002817606.1	identified by match to protein family HMM PF02588
YP_002817607.1	identified by glimmer; putative
YP_002817609.1	identified by glimmer; putative
YP_002817611.1	identified by match to protein family HMM PF04012
YP_002817613.1	identified by glimmer; putative
YP_002817614.1	identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00437
YP_002817615.1	identified by match to protein family HMM PF04023
YP_002817616.1	identified by match to protein family HMM PF09515; match to protein family HMM TIGR02357
YP_002817617.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002817618.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002817619.1	identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076
YP_002817620.1	identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167
YP_002817621.1	identified by glimmer; putative
YP_002817622.1	identified by glimmer; putative
YP_002817623.1	identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203
YP_002817624.1	identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147
YP_002817625.1	identified by glimmer; putative
YP_002817626.1	identified by match to protein family HMM TIGR01784
YP_002817628.1	identified by match to protein family HMM PF00248
YP_002817629.1	identified by glimmer; putative
YP_002817630.1	identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655
YP_002817631.1	identified by match to protein family HMM PF09335
YP_002817633.1	identified by match to protein family HMM PF02687
YP_002817634.1	identified by match to protein family HMM PF00005
YP_002817635.1	identified by match to protein family HMM PF06445
YP_002817636.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002817637.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002817638.1	identified by glimmer; putative
YP_002817639.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817641.1	identified by match to protein family HMM PF00005
YP_002817642.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02687
YP_002817643.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817644.1	identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732
YP_002817645.1	identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791
YP_002817646.1	identified by match to protein family HMM PF00392; match to protein family HMM PF07702
YP_002817647.1	identified by match to protein family HMM PF00294
YP_002817648.1	identified by match to protein family HMM PF07071; match to protein family HMM TIGR03581
YP_002817649.1	identified by match to protein family HMM PF01212; match to protein family HMM PF03841; match to protein family HMM TIGR01437
YP_002817650.1	Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides
YP_002817652.1	identified by glimmer; putative
YP_002817653.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02557
YP_002817654.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002817655.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002817656.1	identified by match to protein family HMM PF01188; match to protein family HMM PF02746; match to protein family HMM TIGR01928
YP_002817657.1	converts O-succinylbenzoate to O-succinylbenzoyl-CoA
YP_002817658.1	catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA
YP_002817659.1	identified by match to protein family HMM PF00561
YP_002817660.1	SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis
YP_002817661.1	identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543
YP_002817662.1	catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate
YP_002817663.1	identified by match to protein family HMM TIGR02890
YP_002817664.1	identified by match to protein family HMM PF00313
YP_002817665.1	identified by match to protein family HMM PF01987; match to protein family HMM TIGR00266
YP_002817666.1	identified by match to protein family HMM PF01764
YP_002817667.1	identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093
YP_002817668.1	catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose
YP_002817669.1	identified by match to protein family HMM PF00132; match to protein family HMM TIGR02092
YP_002817670.1	catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate
YP_002817671.1	catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain
YP_002817672.1	Converts (S)-lactate and NAD(+) to pyruvate and NADH
YP_002817673.1	identified by match to protein family HMM PF02308
YP_002817674.1	identified by match to protein family HMM PF02254; match to protein family HMM PF07885
YP_002817675.1	identified by match to protein family HMM PF08868
YP_002817676.1	functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family
YP_002817677.1	identified by match to protein family HMM PF04070
YP_002817678.1	induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation
YP_002817679.1	identified by match to protein family HMM PF00155
YP_002817680.1	identified by match to protein family HMM PF01037
YP_002817681.1	identified by match to protein family HMM PF00389; match to protein family HMM PF02826
YP_002817682.1	identified by match to protein family HMM PF00561
YP_002817683.1	identified by match to protein family HMM PF08958
YP_002817684.1	identified by match to protein family HMM PF00155
YP_002817685.1	identified by match to protein family HMM PF00080
YP_002817687.1	identified by match to protein family HMM PF08810
YP_002817688.1	inhibitor of the KinA pathway of sporulation
YP_002817689.1	identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600
YP_002817691.1	identified by match to protein family HMM PF08713
YP_002817692.1	identified by glimmer; putative
YP_002817693.1	Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
YP_002817694.1	identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369
YP_002817696.1	identified by match to protein family HMM PF02632
YP_002817697.1	identified by glimmer; putative
YP_002817698.1	identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099
YP_002817699.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880
YP_002817700.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817701.1	identified by match to protein family HMM PF02457
YP_002817702.1	catalyzes the removal of N-terminal amino acids preferably leucine from various peptides
YP_002817703.1	identified by match to protein family HMM PF06725
YP_002817705.1	identified by match to protein family HMM PF00293
YP_002817707.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_002817708.1	identified by match to protein family HMM PF00746; match to protein family HMM PF01345; match to protein family HMM TIGR01167; match to protein family HMM TIGR01451
YP_002817709.1	identified by match to protein family HMM PF06445
YP_002817710.1	identified by match to protein family HMM PF07690
YP_002817712.1	identified by match to protein family HMM PF04463
YP_002817713.1	identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655
YP_002817715.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00583
YP_002817716.1	identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049
YP_002817717.1	involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate
YP_002817718.1	identified by match to protein family HMM PF07293
YP_002817719.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_002817720.1	identified by match to protein family HMM PF09388
YP_002817721.1	identified by match to protein family HMM PF00005
YP_002817722.1	identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245
YP_002817723.1	identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686
YP_002817724.1	identified by glimmer; putative
YP_002817725.1	identified by glimmer; putative
YP_002817726.1	identified by match to protein family HMM PF09346
YP_002817727.1	identified by glimmer; putative
YP_002817728.1	identified by glimmer; putative
YP_002817729.1	identified by match to protein family HMM PF02517
YP_002817730.1	identified by match to protein family HMM PF01909
YP_002817731.1	identified by match to protein family HMM PF07315
YP_002817732.1	identified by match to protein family HMM PF01106
YP_002817733.1	identified by glimmer; putative
YP_002817734.1	identified by match to protein family HMM TIGR02905
YP_002817735.1	identified by match to protein family HMM PF04608
YP_002817737.1	identified by match to protein family HMM PF02525; match to protein family HMM PF03358
YP_002817738.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460
YP_002817739.1	identified by match to protein family HMM PF01022; match to protein family HMM PF08220; match to protein family HMM PF08279
YP_002817740.1	identified by match to protein family HMM PF01934
YP_002817741.1	similar to GlpX type II fructose-1,6-bisphosphatase
YP_002817743.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002817744.1	identified by match to protein family HMM PF06265
YP_002817745.1	identified by match to protein family HMM PF09580
YP_002817746.1	identified by match to protein family HMM PF00376; match to protein family HMM PF07739; match to protein family HMM PF09278
YP_002817748.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817749.1	identified by match to protein family HMM PF00300
YP_002817750.1	identified by match to protein family HMM PF04073
YP_002817751.1	catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group
YP_002817752.1	identified by match to protein family HMM PF01551
YP_002817753.1	identified by match to protein family HMM PF09560; match to protein family HMM TIGR02832
YP_002817754.1	identified by match to protein family HMM PF08827
YP_002817757.1	identified by match to protein family HMM PF03551
YP_002817758.1	identified by match to protein family HMM PF04892
YP_002817759.1	identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980
YP_002817760.1	identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994
YP_002817761.1	identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979
YP_002817762.1	identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981
YP_002817763.1	identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978
YP_002817764.1	identified by match to protein family HMM PF03180
YP_002817765.1	identified by match to protein family HMM PF03180
YP_002817766.1	identified by match to protein family HMM PF00528
YP_002817767.1	identified by match to protein family HMM PF00005; match to protein family HMM PF09383
YP_002817768.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817769.1	identified by glimmer; putative
YP_002817771.1	identified by match to protein family HMM PF01751
YP_002817772.1	part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor
YP_002817773.1	identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617
YP_002817774.1	identified by glimmer; putative
YP_002817775.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative
YP_002817777.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817778.1	identified by glimmer; putative
YP_002817782.1	Converts (S)-lactate and NAD(+) to pyruvate and NADH
YP_002817783.1	identified by match to protein family HMM PF07875
YP_002817785.1	identified by match to protein family HMM PF02517
YP_002817786.1	identified by match to protein family HMM PF00440
YP_002817787.1	identified by match to protein family HMM PF00753
YP_002817788.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_002817789.1	identified by glimmer; putative
YP_002817790.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_002817791.1	identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737
YP_002817792.1	identified by glimmer; putative
YP_002817793.1	identified by match to protein family HMM PF00768; match to protein family HMM PF00905
YP_002817794.1	identified by match to protein family HMM PF01619
YP_002817796.1	identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106
YP_002817797.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743
YP_002817798.1	identified by match to protein family HMM PF01978
YP_002817799.1	identified by match to protein family HMM PF05738; match to protein family HMM TIGR01167
YP_002817800.1	identified by glimmer; putative
YP_002817801.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002817802.1	identified by match to protein family HMM PF00324
YP_002817804.1	involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site
YP_002817805.1	identified by glimmer; putative
YP_002817806.1	identified by match to protein family HMM PF02588
YP_002817807.1	identified by glimmer; putative
YP_002817808.1	identified by glimmer; putative
YP_002817810.1	identified by glimmer; putative
YP_002817811.1	identified by match to protein family HMM PF01381
YP_002817812.1	identified by glimmer; putative
YP_002817813.1	identified by match to protein family HMM PF09335
YP_002817814.1	identified by glimmer; putative
YP_002817815.1	identified by match to protein family HMM PF03734
YP_002817816.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002817817.1	identified by match to protein family HMM PF00512; match to protein family HMM PF02518
YP_002817818.1	identified by match to protein family HMM PF00892
YP_002817819.1	methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content
YP_002817820.1	identified by match to protein family HMM PF08241; match to protein family HMM PF08242
YP_002817821.1	identified by match to protein family HMM PF00015; match to protein family HMM PF00672
YP_002817822.1	identified by match to protein family HMM PF01883
YP_002817823.1	identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504
YP_002817824.1	identified by match to protein family HMM PF02678; match to protein family HMM PF07883
YP_002817825.1	identified by match to protein family HMM PF01047
YP_002817826.1	identified by glimmer; putative
YP_002817827.1	identified by match to protein family HMM PF00999
YP_002817828.1	identified by match to protein family HMM PF02080
YP_002817829.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_002817830.1	identified by match to protein family HMM PF00210
YP_002817831.1	identified by glimmer; putative
YP_002817832.1	identified by glimmer; putative
YP_002817833.1	identified by glimmer; putative
YP_002817834.1	identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730
YP_002817835.1	identified by match to protein family HMM PF03819
YP_002817836.1	identified by match to protein family HMM PF00210
YP_002817837.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817838.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF04235
YP_002817839.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670
YP_002817840.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670
YP_002817841.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_002817842.1	identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835
YP_002817844.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817845.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817846.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817848.1	identified by match to protein family HMM PF00248
YP_002817849.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002817850.1	identified by match to protein family HMM PF01638
YP_002817852.1	identified by match to protein family HMM PF00070; match to protein family HMM PF07992
YP_002817853.1	catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr)
YP_002817854.1	catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis
YP_002817856.1	identified by match to protein family HMM PF00015
YP_002817857.1	identified by match to protein family HMM PF03372
YP_002817858.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_002817859.1	may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling
YP_002817860.1	identified by glimmer; putative
YP_002817862.1	identified by match to protein family HMM PF00583
YP_002817863.1	identified by match to protein family HMM PF06146
YP_002817864.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817865.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08378
YP_002817867.1	identified by match to protein family HMM PF00005
YP_002817868.1	identified by match to protein family HMM PF01032
YP_002817869.1	identified by match to protein family HMM PF01032
YP_002817870.1	identified by match to protein family HMM PF01497
YP_002817871.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002817872.1	binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation
YP_002817873.1	identified by glimmer; putative
YP_002817874.1	identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063
YP_002817876.1	identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810
YP_002817877.1	identified by match to protein family HMM PF04172
YP_002817878.1	increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation; inhibited by the antiholin-like proteins lrgAB
YP_002817879.1	identified by match to protein family HMM PF01156
YP_002817880.1	identified by glimmer; putative
YP_002817882.1	identified by glimmer; putative
YP_002817883.1	identified by match to protein family HMM PF01844; match to protein family HMM PF07463
YP_002817884.1	identified by glimmer; putative
YP_002817887.1	identified by glimmer; putative
YP_002817888.1	identified by glimmer; putative
YP_002817890.1	identified by glimmer; putative
YP_002817891.1	identified by glimmer; putative
YP_002817893.1	identified by glimmer; putative
YP_002817894.1	identified by glimmer; putative
YP_002817895.1	identified by match to protein family HMM PF03354
YP_002817896.1	identified by match to protein family HMM PF01844
YP_002817897.1	identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537
YP_002817898.1	identified by match to protein family HMM PF04586; match to protein family HMM TIGR01543
YP_002817899.1	identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554
YP_002817900.1	identified by glimmer; putative
YP_002817902.1	identified by match to protein family HMM PF00589; match to protein family HMM PF02899
YP_002817903.1	enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis
YP_002817904.1	catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
YP_002817905.1	Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate
YP_002817906.1	Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway
YP_002817907.1	identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534
YP_002817908.1	identified by match to protein family HMM PF04198
YP_002817909.1	identified by match to protein family HMM PF00462; match to protein family HMM PF05768
YP_002817910.1	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen
YP_002817911.1	identified by match to protein family HMM PF07870
YP_002817913.1	identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838
YP_002817914.1	identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845
YP_002817915.1	identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839
YP_002817916.1	identified by match to protein family HMM PF07870
YP_002817917.1	identified by match to protein family HMM PF04239; match to protein family HMM PF07870
YP_002817918.1	hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates
YP_002817919.1	identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003
YP_002817920.1	identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647
YP_002817921.1	identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826
YP_002817922.1	identified by match to protein family HMM PF03668
YP_002817923.1	identified by match to protein family HMM PF00293
YP_002817924.1	identified by match to protein family HMM PF04018
YP_002817925.1	identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01292
YP_002817926.1	identified by match to protein family HMM PF00515; match to protein family HMM PF07719
YP_002817927.1	identified by match to protein family HMM PF00132
YP_002817928.1	hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr dephosphorylation
YP_002817929.1	transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein
YP_002817930.1	catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system
YP_002817931.1	identified by match to protein family HMM PF04020
YP_002817932.1	identified by glimmer; putative
YP_002817933.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
YP_002817934.1	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
YP_002817935.1	identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766
YP_002817938.1	identified by match to protein family HMM PF00376
YP_002817939.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002817940.1	identified by glimmer; putative
YP_002817941.1	identified by glimmer; putative
YP_002817942.1	identified by match to protein family HMM PF01381
YP_002817943.1	identified by match to protein family HMM PF03601
YP_002817944.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002817945.1	identified by match to protein family HMM PF00376
YP_002817946.1	identified by match to protein family HMM PF02525; match to protein family HMM PF03358
YP_002817947.1	identified by match to protein family HMM PF00005
YP_002817948.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01906
YP_002817949.1	identified by match to protein family HMM PF00005; match to protein family HMM PF00664
YP_002817951.1	identified by match to protein family HMM PF00595; match to protein family HMM PF01471; match to protein family HMM PF03572; match to protein family HMM TIGR00225
YP_002817952.1	identified by match to protein family HMM PF02687
YP_002817953.1	identified by match to protein family HMM PF00005
YP_002817955.1	catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA
YP_002817956.1	functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins
YP_002817957.1	identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741
YP_002817959.1	identified by match to protein family HMM PF00313
YP_002817961.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851
YP_002817962.1	identified by match to protein family HMM PF00877
YP_002817963.1	identified by match to protein family HMM PF01638
YP_002817964.1	identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762
YP_002817965.1	identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257
YP_002817966.1	identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350
YP_002817967.1	identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236
YP_002817968.1	identified by match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026
YP_002817969.1	identified by match to protein family HMM PF00953
YP_002817970.1	identified by match to protein family HMM PF01522
YP_002817971.1	identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF03610; match to protein family HMM PF07728
YP_002817972.1	identified by match to protein family HMM PF07452
YP_002817973.1	identified by match to protein family HMM PF02417; match to protein family HMM TIGR00937
YP_002817974.1	identified by match to protein family HMM PF04794
YP_002817975.1	identified by match to protein family HMM PF02056
YP_002817976.1	identified by match to protein family HMM PF02255
YP_002817977.1	identified by match to protein family HMM PF02378; match to protein family HMM TIGR00359; match to protein family HMM TIGR00410
YP_002817978.1	identified by match to protein family HMM PF02302
YP_002817979.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_002817980.1	Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine
YP_002817981.1	identified by match to protein family HMM PF02255
YP_002817982.1	identified by match to protein family HMM PF02378; match to protein family HMM TIGR00359; match to protein family HMM TIGR00410
YP_002817983.1	identified by match to protein family HMM PF02302; match to protein family HMM TIGR00853
YP_002817984.1	identified by match to protein family HMM PF00375
YP_002817986.1	identified by match to protein family HMM PF00903
YP_002817987.1	identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062
YP_002817988.1	identified by match to protein family HMM PF00126; match to protein family HMM PF03466
YP_002817989.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817990.1	identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766
YP_002817991.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002817992.1	identified by match to protein family HMM PF01654
YP_002817994.1	identified by match to protein family HMM PF02040; match to protein family HMM PF03600
YP_002817995.1	required for the synthesis of the hydromethylpyrimidine moiety of thiamine
YP_002817996.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795
YP_002817999.1	identified by match to protein family HMM PF06803
YP_002818000.1	identified by match to protein family HMM PF00884
YP_002818001.1	catalyzes the transamination of D-amino acids and their alpha-keto acids
YP_002818002.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002818003.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002818004.1	identified by match to protein family HMM PF00877; match to protein family HMM PF06347; match to protein family HMM PF08239
YP_002818005.1	identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804
YP_002818006.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002818007.1	identified by match to protein family HMM PF00535
YP_002818008.1	identified by glimmer; putative
YP_002818009.1	identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842
YP_002818010.1	identified by match to protein family HMM PF06347; match to protein family HMM PF06725; match to protein family HMM PF08239
YP_002818011.1	identified by glimmer; putative
YP_002818015.1	identified by match to protein family HMM PF04434
YP_002818016.1	identified by match to protein family HMM PF00176; match to protein family HMM PF00271
YP_002818018.1	identified by match to protein family HMM PF07872
YP_002818019.1	identified by glimmer; putative
YP_002818021.1	identified by match to protein family HMM PF06338
YP_002818022.1	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
YP_002818024.1	identified by match to protein family HMM PF02687
YP_002818025.1	identified by match to protein family HMM PF00005
YP_002818026.1	identified by match to protein family HMM TIGR01730
YP_002818027.1	identified by match to protein family HMM PF01381
YP_002818029.1	identified by match to protein family HMM PF07690; match to protein family HMM TIGR00881
YP_002818032.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518
YP_002818033.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002818034.1	identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179
YP_002818035.1	attenuator function for control of operon expression
YP_002818036.1	in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP
YP_002818038.1	identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236
YP_002818039.1	with TagG is involved in the export of teichoic acids
YP_002818040.1	identified by match to protein family HMM PF01061
YP_002818041.1	identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026
YP_002818042.1	identified by match to protein family HMM PF07495; match to protein family HMM PF07940
YP_002818043.1	identified by match to protein family HMM PF00534
YP_002818044.1	identified by glimmer; putative
YP_002818046.1	identified by glimmer; putative
YP_002818047.1	identified by match to protein family HMM PF00534
YP_002818048.1	identified by match to protein family HMM PF00534
YP_002818049.1	identified by match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904
YP_002818051.1	identified by match to protein family HMM PF07495
YP_002818052.1	identified by glimmer; putative
YP_002818053.1	identified by match to protein family HMM PF01551
YP_002818054.1	identified by match to protein family HMM PF01061
YP_002818055.1	identified by match to protein family HMM PF00005
YP_002818056.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF04397
YP_002818057.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002818058.1	identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870
YP_002818059.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_002818060.1	identified by match to protein family HMM PF08680
YP_002818061.1	identified by match to protein family HMM PF06612; match to protein family HMM TIGR02327
YP_002818062.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002818063.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002818064.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_002818065.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002818066.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002818067.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002818068.1	Catalyzes the transfer of electrons from NADH to quinone
YP_002818069.1	catalyzes the transfer of electrons from NADH to ubiquinone
YP_002818070.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_002818071.1	The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen
YP_002818072.1	Catalyzes the transfer of electrons from NADH to ubiquinone
YP_002818073.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_002818074.1	identified by match to protein family HMM PF06161
YP_002818075.1	identified by match to protein family HMM PF06161
YP_002818076.1	part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane
YP_002818077.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit
YP_002818078.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit
YP_002818079.1	produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit
YP_002818080.1	Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex
YP_002818081.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.
YP_002818082.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0
YP_002818083.1	Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0
YP_002818084.1	identified by match to protein family HMM PF05468
YP_002818086.1	identified by glimmer; putative
YP_002818087.1	Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate
YP_002818088.1	catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate
YP_002818089.1	identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440
YP_002818090.1	catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity
YP_002818091.1	identified by match to protein family HMM PF01451
YP_002818092.1	identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830
YP_002818093.1	identified by match to protein family HMM PF07681
YP_002818095.1	identified by glimmer; putative
YP_002818096.1	identified by match to protein family HMM PF02659
YP_002818097.1	identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057
YP_002818099.1	identified by match to protein family HMM PF09551; match to protein family HMM TIGR02837
YP_002818100.1	identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03534
YP_002818101.1	recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2
YP_002818102.1	catalyzes the formation of thymidine 5'-phosphate from thymidine
YP_002818103.1	RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome
YP_002818104.1	An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes
YP_002818105.1	type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese
YP_002818106.1	adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active
YP_002818107.1	catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate
YP_002818108.1	identified by match to protein family HMM PF00072
YP_002818110.1	CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer
YP_002818111.1	participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling
YP_002818112.1	identified by match to protein family HMM PF00440
YP_002818113.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_002818114.1	identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028
YP_002818115.1	converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA
YP_002818116.1	Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation
YP_002818117.1	identified by match to protein family HMM PF02754
YP_002818118.1	identified by match to protein family HMM PF00614
YP_002818119.1	identified by match to protein family HMM PF03851; match to protein family HMM TIGR00629
YP_002818120.1	identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254
YP_002818121.1	identified by match to protein family HMM PF05968
YP_002818122.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop
YP_002818123.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01381
YP_002818124.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_002818125.1	identified by match to protein family HMM PF02518; match to protein family HMM PF07730
YP_002818126.1	identified by match to protein family HMM PF01061
YP_002818127.1	identified by match to protein family HMM PF00005
YP_002818128.1	catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential
YP_002818129.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05737
YP_002818130.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05737; match to protein family HMM PF05738
YP_002818131.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167
YP_002818132.1	identified by glimmer; putative
YP_002818133.1	identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389
YP_002818134.1	identified by glimmer; putative
YP_002818136.1	identified by glimmer; putative
YP_002818137.1	Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription
YP_002818138.1	catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase
YP_002818139.1	identified by match to protein family HMM PF09148
YP_002818140.1	identified by match to protein family HMM PF02016
YP_002818141.1	identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655
YP_002818143.1	identified by glimmer; putative
YP_002818144.1	identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230
YP_002818145.1	catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine
YP_002818146.1	identified by match to protein family HMM PF07690
YP_002818147.1	identified by match to protein family HMM PF00376; match to protein family HMM PF09278
YP_002818148.1	identified by glimmer; putative
YP_002818149.1	identified by match to protein family HMM PF03009
YP_002818150.1	identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074
YP_002818151.1	identified by match to protein family HMM PF08741
YP_002818152.1	identified by match to protein family HMM PF02163
YP_002818153.1	4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown
YP_002818154.1	identified by match to protein family HMM PF01966
YP_002818155.1	identified by match to protein family HMM PF01497
YP_002818156.1	identified by match to protein family HMM PF00005
YP_002818157.1	identified by match to protein family HMM PF01032
YP_002818158.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01032
YP_002818159.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01032
YP_002818161.1	identified by match to protein family HMM TIGR02894
YP_002818163.1	identified by match to protein family HMM PF03099
YP_002818164.1	in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta
YP_002818165.1	identified by match to protein family HMM PF06778
YP_002818166.1	identified by match to protein family HMM PF00768; match to protein family HMM PF07943
YP_002818167.1	identified by match to protein family HMM PF07486
YP_002818168.1	identified by match to protein family HMM PF09671; match to protein family HMM TIGR02728
YP_002818169.1	identified by match to protein family HMM PF04241
YP_002818171.1	identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885
YP_002818172.1	identified by match to protein family HMM PF00860
YP_002818173.1	identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484
YP_002818175.1	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
YP_002818177.1	identified by match to protein family HMM PF00005
YP_002818178.1	identified by match to protein family HMM PF00657
YP_002818179.1	identified by match to protein family HMM PF00356; match to protein family HMM PF00532
YP_002818180.1	identified by match to protein family HMM PF02588
YP_002818181.1	catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine
YP_002818182.1	catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis
YP_002818183.1	catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol
YP_002818184.1	identified by match to protein family HMM PF00654
YP_002818185.1	identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254
YP_002818186.1	activator of nucleoside metabolism
YP_002818187.1	FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds
YP_002818188.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00196
YP_002818189.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF02518; match to protein family HMM PF07730
YP_002818190.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01590
YP_002818191.1	catalyzes the phosphorylation of three vitamin B6 precursors, pyridoxal, pyridoxine and pyridoxamine
YP_002818192.1	identified by match to protein family HMM PF00990; match to protein family HMM PF07694; match to protein family HMM TIGR00254
YP_002818193.1	identified by match to protein family HMM PF04328
YP_002818194.1	identified by match to protein family HMM PF02554
YP_002818195.1	identified by match to protein family HMM PF00072; match to protein family HMM PF04397
YP_002818196.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002818197.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002818198.1	identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696
YP_002818199.1	identified by match to protein family HMM PF00534
YP_002818201.1	identified by match to protein family HMM PF03458
YP_002818202.1	identified by match to protein family HMM PF00015
YP_002818204.1	identified by match to protein family HMM PF03061
YP_002818205.1	identified by match to protein family HMM PF01943
YP_002818206.1	identified by match to protein family HMM PF00535
YP_002818207.1	identified by match to protein family HMM PF00005
YP_002818208.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002818209.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift
YP_002818211.1	identified by match to protein family HMM PF04138
YP_002818212.1	identified by match to protein family HMM PF00535
YP_002818213.1	identified by match to protein family HMM PF00440
YP_002818214.1	identified by match to protein family HMM PF00873
YP_002818215.1	identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401
YP_002818216.1	identified by glimmer; putative
YP_002818217.1	identified by match to protein family HMM PF01594
YP_002818218.1	in conjunction with LrgA this protein inhibits the expression or activity of extracellular murein hydrolases
YP_002818219.1	negatively regulates murein hydrolase activity
YP_002818220.1	identified by match to protein family HMM PF00072; match to protein family HMM PF04397
YP_002818221.1	identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694
YP_002818222.1	identified by match to protein family HMM PF00083; match to protein family HMM PF07690
YP_002818223.1	identified by match to protein family HMM PF02028
YP_002818224.1	identified by match to protein family HMM PF02898
YP_002818225.1	identified by match to protein family HMM PF00081; match to protein family HMM PF02777
YP_002818226.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993
YP_002818227.1	identified by match to protein family HMM PF02293
YP_002818228.1	identified by glimmer; putative
YP_002818229.1	identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01179
YP_002818230.1	identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065
YP_002818231.1	identified by match to protein family HMM PF08876
YP_002818232.1	identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880
YP_002818233.1	identified by match to protein family HMM PF01757
YP_002818234.1	identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306
YP_002818235.1	identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181
YP_002818236.1	identified by match to protein family HMM PF04055
YP_002818237.1	SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA
YP_002818239.1	identified by match to protein family HMM PF00089
YP_002818240.1	identified by match to protein family HMM PF00753
YP_002818241.1	identified by match to protein family HMM PF09648
YP_002818242.1	identified by match to protein family HMM PF07435
YP_002818243.1	identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229
YP_002818244.1	identified by match to protein family HMM PF00072; match to protein family HMM PF00486
YP_002818245.1	catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis
YP_002818246.1	unwinds double stranded DNA
YP_002818247.1	in Escherichia coli this protein is wrapped around the base of the L1 stalk
YP_002818248.1	an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01368; match to protein family HMM PF02272
YP_002818250.1	binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit
YP_002818251.1	binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA
YP_002818252.1	binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21
YP_002818253.1	translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1
YP_002818254.1	identified by match to protein family HMM PF06107
YP_002818255.1	identified by match to protein family HMM PF00924
YP_002818256.1	identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841
YP_002818257.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_002818258.1	identified by match to protein family HMM PF01656
YP_002818259.1	identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180
YP_002818260.1	glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA
YP_002818261.1	GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs
YP_002818262.1	in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE
YP_002818263.1	identified by match to protein family HMM PF01424
YP_002818264.1	involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site; necessary for sporulation
YP_002818265.1	protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates
YP_002818266.1	in Escherichia coli transcription of this gene is enhanced by polyamines