-- dump date 20140618_214038 -- class Genbank::CDS -- table cds_note -- id note YP_002747436.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_002747437.1 binds the polymerase to DNA and acts as a sliding clamp YP_002747438.1 identified by match to protein family HMM TIGR02988 YP_002747439.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_002747440.1 negatively supercoils closed circular double-stranded DNA YP_002747441.1 negatively supercoils closed circular double-stranded DNA YP_002747443.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_002747444.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943 YP_002747445.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_002747446.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate YP_002747447.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002747448.1 identified by glimmer; putative YP_002747449.1 identified by match to protein family HMM PF01712 YP_002747450.1 identified by match to protein family HMM PF01712 YP_002747451.1 identified by match to protein family HMM PF00857 YP_002747452.1 identified by match to protein family HMM PF00383 YP_002747453.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_002747454.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_002747455.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_002747457.1 identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862 YP_002747459.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03711 YP_002747460.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_002747461.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_002747462.1 identified by match to protein family HMM PF04468 YP_002747463.1 in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA YP_002747466.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_002747467.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_002747468.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_002747469.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_002747470.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334 YP_002747471.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_002747472.1 identified by match to protein family HMM PF05582; match to protein family HMM TIGR02855 YP_002747473.1 identified by match to protein family HMM PF06257 YP_002747475.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_002747476.1 identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743 YP_002747477.1 identified by glimmer; putative YP_002747478.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_002747479.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus YP_002747480.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_002747481.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002747482.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_002747484.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_002747485.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; match to protein family HMM TIGR02851 YP_002747486.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002747487.1 identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444 YP_002747488.1 identified by match to protein family HMM PF01479 YP_002747489.1 identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892 YP_002747490.1 identified by match to protein family HMM PF09578; match to protein family HMM TIGR02893 YP_002747491.1 identified by match to protein family HMM PF04977 YP_002747492.1 identified by match to protein family HMM PF00575 YP_002747493.1 identified by match to protein family HMM PF07228; match to protein family HMM TIGR02865 YP_002747494.1 identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_002747495.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_002747496.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_002747497.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_002747498.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_002747499.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_002747500.1 identified by match to protein family HMM PF00425; match to protein family HMM PF04715 YP_002747501.1 amphibolic enzyme subunit from Bacillus subtilis performs both in anthranilate and para-aminobenzoate synthesis YP_002747502.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate YP_002747503.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_002747504.1 identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526 YP_002747505.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_002747506.1 identified by match to protein family HMM PF01381 YP_002747507.1 identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_002747508.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_002747509.1 identified by match to protein family HMM PF05848 YP_002747510.1 identified by match to protein family HMM PF02151 YP_002747511.1 identified by match to protein family HMM PF00217 YP_002747512.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_002747513.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002747514.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_002747515.1 identified by match to protein family HMM PF01850; match to protein family HMM PF01938 YP_002747516.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_002747517.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_002747518.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002747519.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_002747520.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_002747521.1 identified by match to protein family HMM PF00636 YP_002747522.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_002747523.1 identified by match to protein family HMM PF05991 YP_002747524.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_002747525.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_002747526.1 Modulates Rho-dependent transcription termination YP_002747527.1 binds directly to 23S ribosomal RNA YP_002747528.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_002747529.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002747530.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_002747531.1 identified by match to protein family HMM PF05175; match to protein family HMM PF08242 YP_002747532.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002747533.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_002747534.1 identified by match to protein family HMM PF01248 YP_002747535.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_002747536.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_002747537.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002747538.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002747539.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_002747540.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_002747541.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_002747542.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_002747543.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002747544.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_002747545.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_002747546.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_002747547.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002747548.1 one of the stabilizing components for the large ribosomal subunit YP_002747549.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_002747550.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_002747551.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_002747552.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002747553.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_002747554.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002747555.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002747556.1 binds 5S rRNA along with protein L5 and L25 YP_002747557.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_002747558.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_002747559.1 late assembly protein YP_002747560.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002747561.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_002747562.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_002747563.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_002747564.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_002747565.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_002747566.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_002747567.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002747568.1 is a component of the macrolide binding site in the peptidyl transferase center YP_002747569.1 with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene YP_002747570.1 with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene YP_002747571.1 identified by match to protein family HMM PF02361 YP_002747572.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_002747573.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_002747574.1 forms a direct contact with the tRNA during translation YP_002747576.1 identified by match to protein family HMM PF01520; match to protein family HMM TIGR02883 YP_002747577.1 identified by match to protein family HMM PF01883 YP_002747580.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764 YP_002747582.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_002747583.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01229 YP_002747584.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159 YP_002747585.1 identified by match to protein family HMM PF07949 YP_002747586.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_002747587.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_002747590.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002747591.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01314 YP_002747592.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791 YP_002747593.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_002747594.1 identified by match to protein family HMM PF00326; match to protein family HMM PF07676 YP_002747596.1 identified by match to protein family HMM PF04173; match to protein family HMM PF07681 YP_002747598.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002747600.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002747601.1 identified by match to protein family HMM PF00528 YP_002747602.1 identified by match to protein family HMM PF00005; match to protein family HMM PF09383 YP_002747603.1 identified by match to protein family HMM PF03180 YP_002747604.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002747606.1 identified by match to protein family HMM PF01565 YP_002747609.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_002747610.1 identified by glimmer; putative YP_002747612.1 identified by glimmer; putative YP_002747613.1 identified by match to protein family HMM PF00528 YP_002747614.1 identified by match to protein family HMM PF00528 YP_002747615.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002747616.1 identified by match to protein family HMM PF00005 YP_002747617.1 identified by match to protein family HMM PF00496 YP_002747619.1 identified by match to protein family HMM PF00165 YP_002747621.1 identified by match to protein family HMM PF00440 YP_002747622.1 identified by match to protein family HMM PF01061 YP_002747623.1 identified by match to protein family HMM PF00496 YP_002747624.1 identified by match to protein family HMM PF00496 YP_002747625.1 identified by match to protein family HMM PF00248 YP_002747626.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_002747627.1 identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528 YP_002747628.1 identified by match to protein family HMM PF06800 YP_002747629.1 identified by match to protein family HMM PF00528 YP_002747630.1 identified by glimmer; putative YP_002747631.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_002747632.1 identified by match to protein family HMM PF05930; match to protein family HMM TIGR01764 YP_002747633.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002747634.1 identified by match to protein family HMM PF00892 YP_002747635.1 identified by glimmer; putative YP_002747636.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530 YP_002747637.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002747638.1 identified by glimmer; putative YP_002747639.1 identified by match to protein family HMM PF02588 YP_002747640.1 identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655 YP_002747641.1 identified by glimmer; putative YP_002747642.1 identified by match to protein family HMM PF01026 YP_002747643.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002747645.1 identified by match to protein family HMM PF01464 YP_002747649.1 identified by match to protein family HMM PF00005 YP_002747650.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002747652.1 identified by match to protein family HMM PF00496 YP_002747653.1 identified by match to protein family HMM PF00528 YP_002747654.1 identified by match to protein family HMM PF00528 YP_002747655.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002747656.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002747657.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002747658.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002747659.1 identified by glimmer; putative YP_002747660.1 identified by glimmer; putative YP_002747661.1 identified by match to protein family HMM PF00903; match to protein family HMM TIGR01263 YP_002747662.1 identified by match to protein family HMM PF01557 YP_002747663.1 identified by match to protein family HMM PF04209 YP_002747664.1 identified by match to protein family HMM PF07690 YP_002747665.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002747666.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143 YP_002747667.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002747668.1 identified by match to protein family HMM PF03851; match to protein family HMM TIGR00629 YP_002747669.1 identified by match to protein family HMM PF01694 YP_002747670.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_002747672.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 YP_002747674.1 identified by match to protein family HMM PF02452 YP_002747675.1 identified by match to protein family HMM PF00575; match to protein family HMM PF09371 YP_002747676.1 identified by match to protein family HMM PF03926 YP_002747677.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_002747678.1 identified by match to protein family HMM PF00814 YP_002747679.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_002747680.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_002747681.1 identified by match to protein family HMM PF00005 YP_002747682.1 modulates transcription in response to the NADH/NAD(+) redox state YP_002747684.1 identified by match to protein family HMM PF02517 YP_002747685.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_002747686.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_002747688.1 identified by match to protein family HMM PF09346 YP_002747689.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_002747690.1 identified by match to protein family HMM PF00860 YP_002747691.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002747692.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002747694.1 identified by match to protein family HMM PF01323 YP_002747695.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002747696.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002747697.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002747699.1 identified by match to protein family HMM PF00005 YP_002747700.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002747701.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002747702.1 identified by match to protein family HMM PF00892 YP_002747704.1 identified by glimmer; putative YP_002747705.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_002747706.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_002747707.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_002747708.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_002747709.1 With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway YP_002747710.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_002747711.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_002747712.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_002747713.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_002747714.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_002747715.1 involved in de novo purine biosynthesis YP_002747716.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_002747718.1 identified by match to protein family HMM PF01145 YP_002747720.1 PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer YP_002747721.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073 YP_002747722.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_002747723.1 identified by match to protein family HMM PF07537 YP_002747724.1 identified by match to protein family HMM PF01925 YP_002747725.1 catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate YP_002747727.1 identified by match to protein family HMM PF00857 YP_002747728.1 identified by match to protein family HMM PF00005; match to protein family HMM PF09383 YP_002747729.1 identified by match to protein family HMM PF00528 YP_002747730.1 identified by match to protein family HMM PF03180 YP_002747731.1 identified by glimmer; putative YP_002747732.1 identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345 YP_002747733.1 identified by match to protein family HMM PF01047 YP_002747735.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_002747736.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002747737.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002747738.1 similar to YegS from E. coli YP_002747739.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002747740.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate YP_002747741.1 identified by match to protein family HMM PF00158; match to protein family HMM PF07728; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_002747742.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780 YP_002747743.1 identified by match to protein family HMM PF00893 YP_002747744.1 identified by match to protein family HMM PF02073 YP_002747745.1 identified by match to protein family HMM PF01522 YP_002747746.1 identified by match to protein family HMM PF01522 YP_002747747.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670 YP_002747748.1 identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_002747749.1 identified by match to protein family HMM PF01207 YP_002747750.1 identified by match to protein family HMM PF00512; match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_002747751.1 identified by match to protein family HMM PF07308 YP_002747752.1 identified by match to protein family HMM PF01863 YP_002747754.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_002747756.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM TIGR00931 YP_002747757.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002747759.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR03140 YP_002747760.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR03137 YP_002747761.1 related protein from Bacillus subtilis functions as methylribose kinase and functions in salvage pathway YP_002747762.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway YP_002747763.1 catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate YP_002747764.1 identified by match to protein family HMM PF01032 YP_002747765.1 identified by match to protein family HMM PF01032 YP_002747766.1 identified by match to protein family HMM PF01497 YP_002747767.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002747768.1 identified by glimmer; putative YP_002747769.1 identified by match to protein family HMM TIGR01764 YP_002747773.1 identified by glimmer; putative YP_002747774.1 identified by glimmer; putative YP_002747775.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002747776.1 identified by glimmer; putative YP_002747777.1 identified by match to protein family HMM PF04199 YP_002747780.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002747781.1 identified by match to protein family HMM PF00355; match to protein family HMM PF01266 YP_002747782.1 identified by match to protein family HMM PF00487 YP_002747783.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002747784.1 identified by match to protein family HMM PF00497 YP_002747785.1 identified by match to protein family HMM PF00005 YP_002747786.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002747787.1 identified by match to protein family HMM PF00128 YP_002747788.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003 YP_002747789.1 identified by match to protein family HMM PF03372 YP_002747790.1 identified by glimmer; putative YP_002747791.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_002747792.1 decatenates replicating daughter chromosomes YP_002747793.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP YP_002747794.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_002747795.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB YP_002747796.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002747797.1 identified by match to protein family HMM PF01910 YP_002747798.1 identified by match to protein family HMM PF00528 YP_002747799.1 identified by match to protein family HMM PF09084 YP_002747800.1 identified by match to protein family HMM PF00005 YP_002747802.1 identified by match to protein family HMM PF00005 YP_002747803.1 identified by match to protein family HMM PF00041; match to protein family HMM PF00553; match to protein family HMM PF00704 YP_002747804.1 identified by match to protein family HMM PF09350 YP_002747806.1 identified by glimmer; putative YP_002747808.1 identified by match to protein family HMM PF00440; match to protein family HMM PF08360 YP_002747809.1 identified by match to protein family HMM PF07690 YP_002747810.1 identified by match to protein family HMM PF01381 YP_002747812.1 identified by match to protein family HMM PF07690 YP_002747813.1 identified by match to protein family HMM PF01663 YP_002747815.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002747816.1 identified by match to protein family HMM TIGR01167 YP_002747817.1 identified by match to protein family HMM PF00480 YP_002747818.1 identified by match to protein family HMM PF02342 YP_002747819.1 identified by match to protein family HMM PF02342 YP_002747820.1 identified by match to protein family HMM PF02342 YP_002747821.1 identified by match to protein family HMM PF03741 YP_002747823.1 identified by match to protein family HMM PF05816 YP_002747824.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002747825.1 identified by match to protein family HMM PF06569 YP_002747826.1 identified by match to protein family HMM PF01451 YP_002747828.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_002747829.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_002747830.1 identified by match to protein family HMM PF00892 YP_002747831.1 identified by match to protein family HMM PF07947 YP_002747832.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002747833.1 identified by glimmer; putative YP_002747834.1 identified by match to protein family HMM PF09335 YP_002747835.1 identified by match to protein family HMM PF00892 YP_002747837.1 identified by match to protein family HMM PF01243 YP_002747838.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00378; match to protein family HMM TIGR00846 YP_002747840.1 identified by match to protein family HMM PF04055; match to protein family HMM PF08756 YP_002747842.1 identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723 YP_002747843.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02884 YP_002747844.1 identified by match to protein family HMM PF00730 YP_002747845.1 identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_002747846.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_002747847.1 identified by glimmer; putative YP_002747848.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM TIGR00229 YP_002747849.1 identified by match to protein family HMM PF00364 YP_002747850.1 identified by glimmer; putative YP_002747851.1 identified by match to protein family HMM PF00324 YP_002747852.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_002747853.1 identified by match to protein family HMM PF01381; match to protein family HMM PF06803 YP_002747854.1 identified by match to protein family HMM TIGR02840 YP_002747855.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002747857.1 catalyzes the formation of glutamate from glutamine YP_002747858.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998 YP_002747859.1 identified by match to protein family HMM PF00144 YP_002747860.1 identified by glimmer; putative YP_002747862.1 identified by match to protein family HMM PF00535 YP_002747863.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_002747864.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002747865.1 identified by match to protein family HMM PF00535 YP_002747866.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255 YP_002747867.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493 YP_002747868.1 processive; catalyzes the formation of mono-, di- and tri-glucosyldiacylglycerol by the progressive transfer of glucosyl residues to diacylglycerol; involved in the formation of membrane glycolipids YP_002747871.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_002747872.1 identified by match to protein family HMM PF01370; match to protein family HMM PF08338; match to protein family HMM TIGR01777 YP_002747873.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_002747874.1 identified by match to protein family HMM PF08838 YP_002747875.1 identified by glimmer; putative YP_002747876.1 SASP K; found in the forespore compartment YP_002747878.1 identified by match to protein family HMM PF04307 YP_002747879.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_002747881.1 identified by match to protein family HMM PF04259; match to protein family HMM TIGR01442 YP_002747884.1 identified by match to protein family HMM PF04167 YP_002747885.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002747886.1 identified by match to protein family HMM PF06081 YP_002747887.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898 YP_002747888.1 converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate YP_002747889.1 identified by match to protein family HMM PF00005 YP_002747890.1 identified by match to protein family HMM PF06182 YP_002747891.1 identified by match to protein family HMM PF06182 YP_002747892.1 identified by match to protein family HMM PF07885 YP_002747893.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002747894.1 identified by match to protein family HMM PF01475 YP_002747897.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_002747898.1 identified by match to protein family HMM PF00293 YP_002747899.1 identified by match to protein family HMM PF00912 YP_002747900.1 identified by match to protein family HMM PF01323 YP_002747901.1 identified by match to protein family HMM PF00037; match to protein family HMM PF03130; match to protein family HMM PF08331; match to protein family HMM TIGR00276 YP_002747903.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185 YP_002747904.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002747905.1 identified by match to protein family HMM PF06798; match to protein family HMM PF08298 YP_002747906.1 identified by match to protein family HMM PF04285; match to protein family HMM TIGR02877 YP_002747907.1 identified by match to protein family HMM PF00560; match to protein family HMM PF05031; match to protein family HMM TIGR01167 YP_002747908.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_002747909.1 identified by match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453 YP_002747910.1 identified by match to protein family HMM PF01957 YP_002747911.1 identified by match to protein family HMM PF01145 YP_002747912.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002747913.1 identified by match to protein family HMM PF02518 YP_002747914.1 identified by match to protein family HMM PF00072 YP_002747915.1 identified by match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM PF06808; match to protein family HMM TIGR00784 YP_002747918.1 identified by match to protein family HMM PF00023 YP_002747919.1 identified by match to protein family HMM PF00149 YP_002747920.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002747921.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002747922.1 identified by glimmer; putative YP_002747924.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002747925.1 C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration YP_002747926.1 identified by match to protein family HMM PF00072 YP_002747927.1 identified by match to protein family HMM PF03390 YP_002747928.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949 YP_002747930.1 identified by match to protein family HMM PF00892 YP_002747931.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002747932.1 identified by match to protein family HMM PF00583 YP_002747933.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002747934.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002747937.1 identified by match to protein family HMM PF00583 YP_002747938.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth YP_002747939.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_002747940.1 identified by match to protein family HMM PF07849 YP_002747942.1 identified by match to protein family HMM PF03009 YP_002747943.1 identified by match to protein family HMM PF01262; match to protein family HMM PF01488; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_002747944.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845 YP_002747945.1 identified by match to protein family HMM PF01022 YP_002747946.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_002747947.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_002747948.1 identified by match to protein family HMM PF00515; match to protein family HMM PF01381 YP_002747950.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504 YP_002747951.1 identified by match to protein family HMM PF09335 YP_002747953.1 identified by glimmer; putative YP_002747954.1 identified by match to protein family HMM PF04294 YP_002747955.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002747956.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804 YP_002747957.1 identified by match to protein family HMM PF00903 YP_002747958.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_002747959.1 catalyzes the formation of fumarate from aspartate YP_002747960.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795 YP_002747961.1 identified by glimmer; putative YP_002747962.1 identified by match to protein family HMM PF01022 YP_002747963.1 identified by match to protein family HMM PF00665 YP_002747964.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01527 YP_002747965.1 SASP H; spore coat; expressed in forespore compartment YP_002747966.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002747967.1 identified by match to protein family HMM PF01497 YP_002747968.1 identified by match to protein family HMM PF01032 YP_002747969.1 identified by match to protein family HMM PF01032 YP_002747970.1 identified by match to protein family HMM PF00005 YP_002747971.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002747972.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_002747973.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993 YP_002747974.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR00336 YP_002747975.1 identified by match to protein family HMM PF00293 YP_002747977.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728 YP_002747978.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) YP_002747979.1 identified by glimmer; putative YP_002747980.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002747981.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03222 YP_002747982.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404 YP_002747983.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992 YP_002747984.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403 YP_002747985.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002747986.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002747987.1 identified by match to protein family HMM PF03323 YP_002747988.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002747989.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF04967; match to protein family HMM PF08281 YP_002747990.1 identified by match to protein family HMM PF00082; match to protein family HMM PF00404; match to protein family HMM PF02225; match to protein family HMM PF05922 YP_002747992.1 identified by match to protein family HMM PF02517 YP_002747993.1 identified by match to protein family HMM PF01636 YP_002747994.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002747995.1 identified by match to protein family HMM PF00005 YP_002747996.1 identified by match to protein family HMM PF00497 YP_002747997.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002747998.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002747999.1 identified by match to protein family HMM PF00324 YP_002748000.1 identified by match to protein family HMM PF02566 YP_002748001.1 identified by match to protein family HMM PF01230 YP_002748002.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_002748003.1 identified by glimmer; putative YP_002748004.1 identified by match to protein family HMM PF08279 YP_002748005.1 identified by match to protein family HMM PF01872 YP_002748006.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002748007.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002748009.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_002748010.1 identified by match to protein family HMM PF00582 YP_002748011.1 identified by glimmer; putative YP_002748012.1 identified by match to protein family HMM PF00496 YP_002748013.1 identified by match to protein family HMM PF00528 YP_002748014.1 identified by match to protein family HMM PF00528 YP_002748015.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352 YP_002748016.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002748017.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881 YP_002748018.1 identified by match to protein family HMM PF01047 YP_002748019.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002748020.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002748021.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152 YP_002748022.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source YP_002748023.1 identified by match to protein family HMM PF00005 YP_002748024.1 identified by match to protein family HMM PF02653 YP_002748025.1 identified by match to protein family HMM PF00532 YP_002748026.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_002748027.1 identified by match to protein family HMM PF05547; match to protein family HMM TIGR03296 YP_002748028.1 identified by match to protein family HMM PF07690 YP_002748029.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002748030.1 identified by match to protein family HMM PF07885 YP_002748031.1 identified by match to protein family HMM PF00882 YP_002748032.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR03395 YP_002748034.1 identified by match to protein family HMM PF01565; match to protein family HMM PF04030; match to protein family HMM TIGR01679 YP_002748035.1 identified by match to protein family HMM PF04892 YP_002748036.1 identified by glimmer; putative YP_002748037.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002748038.1 identified by match to protein family HMM PF00015 YP_002748039.1 identified by match to protein family HMM PF06725 YP_002748040.1 identified by match to protein family HMM PF01381 YP_002748042.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_002748043.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002748045.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002748048.1 identified by match to protein family HMM PF00324 YP_002748049.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_002748050.1 identified by match to protein family HMM PF01381 YP_002748051.1 identified by glimmer; putative YP_002748052.1 identified by match to protein family HMM PF00583 YP_002748053.1 identified by glimmer; putative YP_002748054.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254 YP_002748055.1 identified by glimmer; putative YP_002748056.1 identified by match to protein family HMM PF03626; match to protein family HMM TIGR02901 YP_002748057.1 identified by match to protein family HMM PF00510; match to protein family HMM TIGR02897 YP_002748058.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02882 YP_002748059.1 identified by match to protein family HMM PF02790; match to protein family HMM TIGR01432 YP_002748061.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002748063.1 identified by match to protein family HMM PF00474 YP_002748064.1 identified by match to protein family HMM PF03323 YP_002748065.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002748066.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002748067.1 identified by glimmer; putative YP_002748068.1 identified by match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670 YP_002748070.1 identified by match to protein family HMM PF04023 YP_002748071.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136 YP_002748072.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_002748073.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_002748075.1 identified by match to protein family HMM PF00873 YP_002748076.1 identified by match to protein family HMM PF00571 YP_002748077.1 identified by glimmer; putative YP_002748078.1 identified by glimmer; putative YP_002748080.1 identified by match to protein family HMM PF01551; match to protein family HMM PF08239 YP_002748081.1 identified by match to protein family HMM PF03070 YP_002748082.1 identified by match to protein family HMM PF00005 YP_002748083.1 identified by match to protein family HMM PF00528 YP_002748084.1 identified by match to protein family HMM PF09084 YP_002748085.1 regulates the production of extracellular enzymes YP_002748086.1 identified by match to protein family HMM PF01266; match to protein family HMM TIGR02352 YP_002748087.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate YP_002748088.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_002748089.1 catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways YP_002748090.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine YP_002748091.1 identified by glimmer; putative YP_002748092.1 identified by glimmer; putative YP_002748093.1 identified by glimmer; putative YP_002748094.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_002748095.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_002748096.1 one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex YP_002748097.1 identified by match to protein family HMM PF00582; match to protein family HMM PF02702 YP_002748098.1 identified by match to protein family HMM PF07690 YP_002748099.1 identified by match to protein family HMM PF01047 YP_002748100.1 identified by match to protein family HMM PF01734 YP_002748102.1 identified by match to protein family HMM PF02687 YP_002748103.1 identified by match to protein family HMM PF02687 YP_002748104.1 identified by match to protein family HMM PF00005 YP_002748105.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002748106.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_002748107.1 identified by match to protein family HMM PF00106 YP_002748108.1 identified by match to protein family HMM PF03734 YP_002748109.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002748110.1 identified by match to protein family HMM PF00294 YP_002748111.1 identified by match to protein family HMM PF00251; match to protein family HMM PF08244; match to protein family HMM TIGR01322 YP_002748112.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01996 YP_002748113.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002748114.1 identified by match to protein family HMM PF07561 YP_002748115.1 identified by match to protein family HMM PF00085 YP_002748116.1 identified by match to protein family HMM PF02600 YP_002748119.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002748120.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002748121.1 identified by match to protein family HMM PF03323 YP_002748123.1 identified by match to protein family HMM PF00881 YP_002748124.1 identified by match to protein family HMM PF04293 YP_002748125.1 identified by glimmer; putative YP_002748126.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR03385 YP_002748127.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00581 YP_002748128.1 identified by match to protein family HMM PF02583 YP_002748129.1 identified by match to protein family HMM PF00581; match to protein family HMM PF01206 YP_002748130.1 identified by match to protein family HMM PF00753 YP_002748131.1 identified by match to protein family HMM PF01206 YP_002748132.1 identified by match to protein family HMM PF00581 YP_002748134.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002748135.1 identified by match to protein family HMM PF01925 YP_002748137.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002748138.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02823 YP_002748139.1 identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704 YP_002748140.1 identified by match to protein family HMM PF07690 YP_002748141.1 identified by match to protein family HMM PF05913 YP_002748142.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279 YP_002748143.1 identified by match to protein family HMM PF02255 YP_002748144.1 identified by match to protein family HMM PF02302 YP_002748145.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002748146.1 identified by glimmer; putative YP_002748147.1 identified by match to protein family HMM PF05913 YP_002748148.1 identified by match to protein family HMM PF06347; match to protein family HMM PF06725; match to protein family HMM PF08239 YP_002748149.1 identified by match to protein family HMM PF02687 YP_002748150.1 identified by match to protein family HMM PF00005 YP_002748151.1 identified by match to protein family HMM TIGR01730 YP_002748152.1 identified by match to protein family HMM PF09529; match to protein family HMM TIGR02206 YP_002748153.1 identified by match to protein family HMM PF00528 YP_002748154.1 identified by match to protein family HMM PF00528 YP_002748155.1 identified by match to protein family HMM PF02687 YP_002748156.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002748157.1 identified by match to protein family HMM PF05067 YP_002748162.1 identified by match to protein family HMM PF02735; match to protein family HMM TIGR02772 YP_002748163.1 identified by match to protein family HMM PF06803 YP_002748164.1 identified by match to protein family HMM PF09335 YP_002748165.1 identified by glimmer; putative YP_002748166.1 identified by glimmer; putative YP_002748168.1 identified by match to protein family HMM PF00041; match to protein family HMM PF00149 YP_002748170.1 identified by glimmer; putative YP_002748171.1 identified by match to protein family HMM PF00324 YP_002748172.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00932 YP_002748173.1 identified by glimmer; putative YP_002748174.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002748175.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_002748176.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378 YP_002748177.1 identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_002748178.1 identified by match to protein family HMM PF05913 YP_002748179.1 identified by match to protein family HMM PF07681 YP_002748182.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151 YP_002748183.1 identified by match to protein family HMM PF01037 YP_002748184.1 catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate YP_002748185.1 identified by match to protein family HMM PF00893 YP_002748186.1 identified by match to protein family HMM PF00893 YP_002748187.1 identified by match to protein family HMM PF00440 YP_002748188.1 identified by match to protein family HMM PF00083; match to protein family HMM PF05978; match to protein family HMM PF07690 YP_002748189.1 identified by match to protein family HMM PF00496 YP_002748190.1 identified by match to protein family HMM PF07690 YP_002748191.1 identified by glimmer; putative YP_002748192.1 identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382 YP_002748193.1 identified by match to protein family HMM PF00199; match to protein family HMM PF06628 YP_002748194.1 identified by match to protein family HMM PF05975 YP_002748195.1 identified by match to protein family HMM PF00324 YP_002748198.1 identified by match to protein family HMM PF00171 YP_002748199.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002748200.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002748201.1 identified by match to protein family HMM PF00497 YP_002748202.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002748203.1 identified by match to protein family HMM PF00005 YP_002748204.1 identified by match to protein family HMM PF00269 YP_002748208.1 identified by match to protein family HMM PF04286 YP_002748209.1 identified by match to protein family HMM PF06133 YP_002748211.1 identified by match to protein family HMM PF08006 YP_002748212.1 catalyzes the formation of 2-acetolactate from pyruvate in stationary phase YP_002748213.1 identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252 YP_002748214.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair YP_002748215.1 identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR01484 YP_002748216.1 identified by match to protein family HMM PF00395; match to protein family HMM PF01510 YP_002748217.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002748218.1 activates fatty acids by binding to coenzyme A YP_002748220.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF00955; match to protein family HMM PF01740 YP_002748222.1 identified by glimmer; putative YP_002748223.1 identified by glimmer; putative YP_002748225.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins YP_002748226.1 identified by match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002748227.1 identified by match to protein family HMM PF04230; match to protein family HMM TIGR03609 YP_002748228.1 identified by match to protein family HMM PF00395; match to protein family HMM PF02368 YP_002748229.1 identified by match to protein family HMM PF00395 YP_002748231.1 identified by match to protein family HMM PF03062 YP_002748233.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002748236.1 identified by glimmer; putative YP_002748237.1 identified by match to protein family HMM PF05343 YP_002748238.1 identified by match to protein family HMM PF00395; match to protein family HMM PF01520 YP_002748239.1 identified by match to protein family HMM PF01170 YP_002748241.1 identified by match to protein family HMM PF05544 YP_002748242.1 catalyzes the formation of L-proline from L-ornithine YP_002748244.1 identified by match to protein family HMM PF00496 YP_002748245.1 identified by match to protein family HMM PF00528 YP_002748246.1 identified by match to protein family HMM PF00528 YP_002748247.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002748248.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002748251.1 identified by glimmer; putative YP_002748252.1 identified by glimmer; putative YP_002748254.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002748255.1 identified by match to protein family HMM PF00989; match to protein family HMM PF02518 YP_002748256.1 identified by match to protein family HMM PF00072 YP_002748257.1 identified by match to protein family HMM PF03401 YP_002748259.1 identified by match to protein family HMM PF00589 YP_002748260.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_002748261.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_002748262.1 identified by match to protein family HMM PF00665 YP_002748263.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01527 YP_002748265.1 identified by glimmer; putative YP_002748266.1 identified by glimmer; putative YP_002748267.1 identified by match to protein family HMM PF07728 YP_002748269.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_002748270.1 unwinds double stranded DNA YP_002748272.1 identified by match to protein family HMM PF01978 YP_002748273.1 identified by match to protein family HMM PF01925 YP_002748275.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002748276.1 identified by glimmer; putative YP_002748278.1 identified by match to protein family HMM PF03551 YP_002748279.1 identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732 YP_002748281.1 identified by match to protein family HMM PF03403 YP_002748282.1 identified by match to protein family HMM PF07336 YP_002748283.1 identified by match to protein family HMM PF04982 YP_002748284.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_002748285.1 identified by match to protein family HMM PF00440 YP_002748286.1 identified by glimmer; putative YP_002748287.1 identified by match to protein family HMM PF01047 YP_002748288.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_002748291.1 identified by match to protein family HMM PF04892 YP_002748294.1 similar to DhaK; in Lactococcus lactis this protein froms a stable complex with DhaS and activates transcription of the dha operon in the presence of dihydroxyacetone YP_002748295.1 identified by match to protein family HMM TIGR02366 YP_002748296.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone YP_002748297.1 identified by match to protein family HMM PF02525 YP_002748298.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_002748302.1 identified by glimmer; putative YP_002748303.1 identified by match to protein family HMM PF01966 YP_002748304.1 identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732 YP_002748305.1 identified by glimmer; putative YP_002748306.1 identified by glimmer; putative YP_002748307.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002748308.1 identified by match to protein family HMM PF00395 YP_002748309.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03551 YP_002748313.1 identified by match to protein family HMM PF05532 YP_002748314.1 identified by match to protein family HMM PF04226 YP_002748315.1 identified by glimmer; putative YP_002748316.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377 YP_002748317.1 binds to sigma-B preventing the formation of an RNA polymerase holoenzyme YP_002748318.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase YP_002748319.1 identified by match to protein family HMM PF00210 YP_002748320.1 identified by match to protein family HMM PF00072; match to protein family HMM PF07228 YP_002748321.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_002748322.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01590; match to protein family HMM PF02518 YP_002748323.1 identified by glimmer; putative YP_002748324.1 identified by glimmer; putative YP_002748326.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative YP_002748327.1 identified by match to protein family HMM PF01906 YP_002748328.1 identified by glimmer; putative YP_002748329.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002748330.1 identified by glimmer; putative YP_002748331.1 identified by glimmer; putative YP_002748333.1 identified by glimmer; putative YP_002748335.1 identified by match to protein family HMM PF00149 YP_002748337.1 catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates YP_002748338.1 identified by match to protein family HMM PF06013 YP_002748342.1 identified by glimmer; putative YP_002748343.1 identified by match to protein family HMM PF00903 YP_002748344.1 identified by match to protein family HMM PF00903 YP_002748345.1 identified by match to protein family HMM PF00515 YP_002748347.1 identified by match to protein family HMM PF00561 YP_002748350.1 identified by match to protein family HMM PF01381 YP_002748351.1 identified by match to protein family HMM PF04309 YP_002748352.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_002748353.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_002748354.1 identified by match to protein family HMM PF01266 YP_002748355.1 identified by glimmer; putative YP_002748358.1 part of sigC operon induced by temperature upshift YP_002748359.1 part of sigC operon that is induced by temperature upshift YP_002748361.1 identified by match to protein family HMM PF01047 YP_002748362.1 identified by match to protein family HMM PF07681 YP_002748363.1 identified by match to protein family HMM PF07690 YP_002748364.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002748365.1 identified by glimmer; putative YP_002748367.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein YP_002748368.1 identified by glimmer; putative YP_002748369.1 identified by match to protein family HMM PF08963 YP_002748370.1 hpr; ScoC; MarR family; protease production regulatory protein YP_002748372.1 identified by match to protein family HMM PF01230 YP_002748373.1 identified by match to protein family HMM PF00005 YP_002748374.1 identified by match to protein family HMM PF05975 YP_002748376.1 identified by glimmer; putative YP_002748377.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002748378.1 identified by glimmer; putative YP_002748382.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002748385.1 identified by glimmer; putative YP_002748390.1 identified by match to protein family HMM PF00440 YP_002748391.1 identified by glimmer; putative YP_002748392.1 identified by match to protein family HMM PF03703 YP_002748393.1 identified by match to protein family HMM PF03703 YP_002748395.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002748397.1 identified by match to protein family HMM PF00395 YP_002748398.1 identified by match to protein family HMM PF06993 YP_002748400.1 identified by match to protein family HMM PF00805 YP_002748401.1 identified by match to protein family HMM PF00376 YP_002748402.1 identified by glimmer; putative YP_002748403.1 identified by match to protein family HMM PF03703 YP_002748404.1 identified by match to protein family HMM PF03703 YP_002748405.1 identified by match to protein family HMM PF03992 YP_002748406.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002748407.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_002748408.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_002748409.1 catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX YP_002748410.1 identified by glimmer; putative YP_002748411.1 identified by match to protein family HMM PF03372 YP_002748415.1 identified by match to protein family HMM PF03965 YP_002748416.1 identified by match to protein family HMM PF05569 YP_002748417.1 identified by match to protein family HMM PF00440 YP_002748418.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_002748420.1 identified by match to protein family HMM PF06713 YP_002748426.1 identified by match to protein family HMM PF08279 YP_002748427.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002748429.1 identified by match to protein family HMM PF00753 YP_002748430.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_002748432.1 activates fatty acids by binding to coenzyme A YP_002748434.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643 YP_002748435.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM TIGR03696 YP_002748438.1 identified by glimmer; putative YP_002748439.1 identified by match to protein family HMM PF09346 YP_002748441.1 identified by glimmer; putative YP_002748442.1 identified by glimmer; putative YP_002748444.1 identified by match to protein family HMM PF00149 YP_002748446.1 identified by match to protein family HMM PF01966 YP_002748448.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_002748449.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_002748450.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002748451.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002748452.1 identified by match to protein family HMM PF02517 YP_002748453.1 identified by glimmer; putative YP_002748454.1 identified by glimmer; putative YP_002748455.1 identified by match to protein family HMM PF01435 YP_002748456.1 identified by match to protein family HMM PF00892 YP_002748457.1 identified by match to protein family HMM PF00395 YP_002748458.1 identified by glimmer; putative YP_002748459.1 identified by match to protein family HMM PF00395 YP_002748460.1 identified by match to protein family HMM PF00395 YP_002748461.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_002748462.1 identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346 YP_002748463.1 identified by match to protein family HMM PF01636 YP_002748464.1 identified by match to protein family HMM PF00313 YP_002748466.1 identified by glimmer; putative YP_002748467.1 identified by match to protein family HMM PF06338 YP_002748468.1 identified by match to protein family HMM PF09335 YP_002748469.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002748470.1 identified by match to protein family HMM TIGR02773 YP_002748471.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785 YP_002748479.1 identified by match to protein family HMM PF09388 YP_002748480.1 identified by match to protein family HMM PF01557 YP_002748481.1 identified by glimmer; putative YP_002748482.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR01885 YP_002748483.1 identified by match to protein family HMM PF07457 YP_002748485.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_002748486.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_002748487.1 identified by match to protein family HMM PF00199 YP_002748488.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_002748489.1 identified by match to protein family HMM PF00128 YP_002748490.1 identified by match to protein family HMM PF01381 YP_002748491.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_002748493.1 identified by glimmer; putative YP_002748494.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein YP_002748496.1 identified by match to protein family HMM PF02588 YP_002748499.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002748501.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346 YP_002748504.1 identified by match to protein family HMM PF01370 YP_002748506.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_002748507.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_002748510.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002748511.1 identified by glimmer; putative YP_002748512.1 identified by match to protein family HMM PF00496 YP_002748513.1 identified by match to protein family HMM PF00528 YP_002748514.1 identified by match to protein family HMM PF00528 YP_002748515.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002748516.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352 YP_002748517.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002748518.1 identified by match to protein family HMM PF00496 YP_002748519.1 identified by glimmer; putative YP_002748521.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress YP_002748522.1 identified by match to protein family HMM PF03741 YP_002748523.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence YP_002748524.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) YP_002748525.1 identified by match to protein family HMM PF06054 YP_002748526.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181 YP_002748527.1 identified by glimmer; putative YP_002748529.1 identified by match to protein family HMM PF01152 YP_002748530.1 identified by match to protein family HMM PF01928 YP_002748532.1 identified by match to protein family HMM PF04607 YP_002748533.1 catalyzes the phosphorylation of NAD to NADP YP_002748534.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_002748535.1 identified by match to protein family HMM PF05658 YP_002748536.1 asymmetrical; catalyzes the formation of NTP and NMP from P(1),P(4)-bis(5'-nucleosyl) tetraphosphate; acts on bis(5'-guanosyl) tetraphosphate, bis(5'-xanthosyl)-tetraphosphate, on bis(5'-adenosyl)-tetraphosphate, and bis(5'-uridyl)-tetraphosphate YP_002748537.1 identified by match to protein family HMM PF01098 YP_002748538.1 identified by match to protein family HMM PF00535 YP_002748539.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002748540.1 identified by match to protein family HMM PF05711 YP_002748541.1 identified by match to protein family HMM PF01391 YP_002748542.1 identified by match to protein family HMM PF00535 YP_002748543.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002748546.1 identified by match to protein family HMM PF00483 YP_002748547.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221 YP_002748548.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_002748549.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 YP_002748550.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_002748553.1 identified by match to protein family HMM PF07098 YP_002748554.1 identified by glimmer; putative YP_002748555.1 identified by glimmer; putative YP_002748557.1 identified by match to protein family HMM PF00580 YP_002748558.1 identified by match to protein family HMM PF00583 YP_002748559.1 similar to 2'-5' RNA ligase YP_002748560.1 identified by match to protein family HMM PF00756 YP_002748561.1 identified by match to protein family HMM PF00892 YP_002748562.1 identified by match to protein family HMM PF06713 YP_002748564.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121 YP_002748565.1 identified by glimmer; putative YP_002748566.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_002748567.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_002748568.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002748569.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_002748570.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_002748571.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002748572.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_002748577.1 identified by glimmer; putative YP_002748579.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_002748581.1 identified by glimmer; putative YP_002748582.1 identified by match to protein family HMM TIGR03605 YP_002748583.1 identified by match to protein family HMM PF02624; match to protein family HMM TIGR03604 YP_002748584.1 identified by match to protein family HMM TIGR03693 YP_002748585.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_002748586.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_002748587.1 identified by match to protein family HMM PF01381 YP_002748589.1 identified by glimmer; putative YP_002748593.1 identified by match to protein family HMM PF03551 YP_002748594.1 identified by glimmer; putative YP_002748595.1 identified by glimmer; putative YP_002748596.1 identified by glimmer; putative YP_002748597.1 identified by glimmer; putative YP_002748598.1 identified by glimmer; putative YP_002748599.1 identified by glimmer; putative YP_002748600.1 identified by glimmer; putative YP_002748601.1 identified by glimmer; putative YP_002748602.1 identified by glimmer; putative YP_002748604.1 identified by glimmer; putative YP_002748605.1 identified by glimmer; putative YP_002748608.1 identified by match to protein family HMM PF00202 YP_002748609.1 identified by match to protein family HMM PF02163 YP_002748610.1 identified by match to protein family HMM PF00106 YP_002748611.1 identified by match to protein family HMM PF00005 YP_002748613.1 identified by glimmer; putative YP_002748614.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002748615.1 identified by glimmer; putative YP_002748616.1 identified by match to protein family HMM PF00768 YP_002748617.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228 YP_002748621.1 identified by match to protein family HMM PF01381; match to protein family HMM PF08671 YP_002748622.1 identified by match to protein family HMM PF08671 YP_002748623.1 identified by match to protein family HMM PF05547; match to protein family HMM TIGR03296 YP_002748624.1 identified by match to protein family HMM PF00171 YP_002748625.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR01187 YP_002748626.1 identified by match to protein family HMM PF00528 YP_002748627.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00528 YP_002748628.1 identified by match to protein family HMM PF01547 YP_002748629.1 identified by match to protein family HMM PF01569 YP_002748632.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_002748633.1 identified by match to protein family HMM PF07853 YP_002748634.1 identified by match to protein family HMM PF00188; match to protein family HMM TIGR02909 YP_002748635.1 identified by match to protein family HMM PF02754 YP_002748636.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; match to protein family HMM TIGR00387 YP_002748637.1 identified by match to protein family HMM PF05651 YP_002748638.1 identified by match to protein family HMM TIGR02276 YP_002748639.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002748640.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002748641.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002748642.1 identified by match to protein family HMM PF02754 YP_002748643.1 identified by match to protein family HMM PF02589; match to protein family HMM TIGR00273 YP_002748644.1 identified by match to protein family HMM PF02589 YP_002748645.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750 YP_002748647.1 identified by match to protein family HMM PF01226 YP_002748648.1 identified by match to protein family HMM PF03741 YP_002748649.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933 YP_002748650.1 identified by match to protein family HMM PF00269 YP_002748651.1 identified by match to protein family HMM PF01575 YP_002748652.1 identified by match to protein family HMM PF09602; match to protein family HMM TIGR02131 YP_002748653.1 identified by match to protein family HMM PF03551; match to protein family HMM TIGR02719 YP_002748654.1 identified by match to protein family HMM TIGR02132 YP_002748655.1 catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis YP_002748656.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01836 YP_002748657.1 identified by match to protein family HMM PF01266 YP_002748658.1 identified by match to protein family HMM PF02386 YP_002748659.1 identified by glimmer; putative YP_002748660.1 identified by glimmer; putative YP_002748662.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR03261 YP_002748664.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR03262 YP_002748665.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate YP_002748666.1 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate YP_002748667.1 identified by match to protein family HMM PF03435 YP_002748668.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002748669.1 identified by glimmer; putative YP_002748671.1 identified by match to protein family HMM PF00596 YP_002748672.1 identified by match to protein family HMM PF00571 YP_002748673.1 identified by match to protein family HMM PF04748 YP_002748674.1 identified by match to protein family HMM PF09388 YP_002748675.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002748676.1 identified by match to protein family HMM PF01047 YP_002748677.1 identified by match to protein family HMM PF01432; match to protein family HMM TIGR02289 YP_002748679.1 identified by glimmer; putative YP_002748680.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002748681.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_002748682.1 identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367 YP_002748683.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR03365 YP_002748684.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_002748686.1 identified by glimmer; putative YP_002748687.1 identified by match to protein family HMM PF00300 YP_002748688.1 identified by match to protein family HMM PF00583 YP_002748690.1 identified by glimmer; putative YP_002748691.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF YP_002748692.1 identified by match to protein family HMM PF00317; match to protein family HMM PF02867 YP_002748693.1 identified by match to protein family HMM PF01844 YP_002748695.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE YP_002748696.1 identified by match to protein family HMM PF00392 YP_002748697.1 identified by match to protein family HMM PF00005 YP_002748699.1 identified by match to protein family HMM PF00005 YP_002748701.1 identified by match to protein family HMM PF02517 YP_002748702.1 identified by glimmer; putative YP_002748703.1 identified by match to protein family HMM PF01037 YP_002748705.1 identified by match to protein family HMM PF00857 YP_002748707.1 identified by match to protein family HMM PF02016 YP_002748708.1 identified by match to protein family HMM PF03060 YP_002748709.1 identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918 YP_002748710.1 D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid YP_002748711.1 identified by match to protein family HMM PF03062 YP_002748712.1 transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid YP_002748714.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002748715.1 identified by glimmer; putative YP_002748716.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_002748717.1 identified by glimmer; putative YP_002748718.1 identified by glimmer; putative YP_002748719.1 identified by match to protein family HMM PF01636 YP_002748721.1 identified by glimmer; putative YP_002748722.1 identified by glimmer; putative YP_002748723.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones YP_002748724.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002748726.1 identified by glimmer; putative YP_002748727.1 identified by match to protein family HMM PF01047 YP_002748728.1 identified by glimmer; putative YP_002748729.1 identified by match to protein family HMM PF00375 YP_002748730.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933 YP_002748732.1 identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874 YP_002748733.1 identified by glimmer; putative YP_002748734.1 identified by match to protein family HMM PF03698 YP_002748735.1 identified by glimmer; putative YP_002748736.1 identified by glimmer; putative YP_002748737.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002748738.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_002748739.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_002748740.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_002748741.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_002748742.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_002748743.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_002748744.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_002748745.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_002748746.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_002748747.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_002748748.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_002748749.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_002748750.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_002748751.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_002748752.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_002748753.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_002748754.1 catalyzes the formation of L-histidinol from L-histidinol phosphate YP_002748755.1 identified by glimmer; putative YP_002748756.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002748757.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_002748758.1 identified by match to protein family HMM PF00884 YP_002748760.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_002748762.1 identified by match to protein family HMM PF01507; match to protein family HMM TIGR00434; match to protein family HMM TIGR02055 YP_002748763.1 ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms YP_002748764.1 identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_002748765.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_002748766.1 identified by glimmer; putative YP_002748767.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1 YP_002748768.1 identified by match to protein family HMM PF01903 YP_002748769.1 catalyzes the formation of siroheme from precorrin-2 YP_002748770.1 identified by match to protein family HMM PF00209 YP_002748771.1 identified by match to protein family HMM PF00665 YP_002748772.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01527 YP_002748773.1 identified by match to protein family HMM PF01551 YP_002748774.1 identified by match to protein family HMM PF00375 YP_002748775.1 identified by match to protein family HMM PF04167 YP_002748776.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03600 YP_002748778.1 identified by match to protein family HMM PF04012 YP_002748780.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002748781.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281 YP_002748782.1 identified by glimmer; putative YP_002748783.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002748784.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002748786.1 identified by glimmer; putative YP_002748787.1 identified by match to protein family HMM PF02163 YP_002748789.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine YP_002748790.1 identified by match to protein family HMM PF00027 YP_002748791.1 identified by glimmer; putative YP_002748792.1 identified by match to protein family HMM PF01925 YP_002748793.1 identified by match to protein family HMM PF01384 YP_002748794.1 identified by match to protein family HMM PF01865 YP_002748795.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002748797.1 identified by match to protein family HMM PF01391 YP_002748798.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_002748799.1 identified by match to protein family HMM PF01904 YP_002748800.1 identified by glimmer; putative YP_002748801.1 identified by match to protein family HMM PF00589 YP_002748802.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002748803.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_002748804.1 identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_002748806.1 identified by match to protein family HMM PF03706; match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331 YP_002748807.1 identified by glimmer; putative YP_002748809.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_002748810.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943 YP_002748811.1 identified by match to protein family HMM PF07670 YP_002748812.1 identified by match to protein family HMM PF07670 YP_002748813.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002748814.1 catalyzes the reduction of the disulfide bonds in the heme binding site of apocytochrome c YP_002748815.1 identified by match to protein family HMM PF05140 YP_002748816.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR03144 YP_002748817.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002748818.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002748819.1 identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636 YP_002748820.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_002748821.1 identified by glimmer; putative YP_002748822.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002748826.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614 YP_002748827.1 identified by match to protein family HMM PF02517 YP_002748828.1 identified by match to protein family HMM PF01476 YP_002748829.1 identified by match to protein family HMM PF00149 YP_002748830.1 identified by match to protein family HMM PF00376 YP_002748831.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence YP_002748832.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812 YP_002748833.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002748834.1 identified by glimmer; putative YP_002748835.1 identified by match to protein family HMM PF01510 YP_002748836.1 identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002748837.1 identified by match to protein family HMM PF00710 YP_002748838.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_002748839.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_002748840.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_002748841.1 identified by glimmer; putative YP_002748845.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_002748846.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_002748850.1 identified by match to protein family HMM PF09547; match to protein family HMM TIGR02836 YP_002748851.1 identified by match to protein family HMM PF00216 YP_002748852.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_002748853.1 identified by match to protein family HMM PF07307 YP_002748854.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_002748855.1 identified by match to protein family HMM PF00348; match to protein family HMM TIGR02748 YP_002748856.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_002748857.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002748858.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_002748859.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_002748860.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720 YP_002748861.1 identified by match to protein family HMM PF08858; match to protein family HMM PF08864 YP_002748863.1 identified by match to protein family HMM PF00355 YP_002748864.1 electron transport protein YP_002748866.1 identified by match to protein family HMM PF07187 YP_002748867.1 identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906 YP_002748868.1 identified by match to protein family HMM PF09577; match to protein family HMM TIGR02878 YP_002748869.1 identified by match to protein family HMM PF04298 YP_002748870.1 identified by match to protein family HMM PF03167 YP_002748871.1 identified by match to protein family HMM PF02588 YP_002748872.1 identified by match to protein family HMM PF03819 YP_002748873.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_002748874.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_002748875.1 identified by match to protein family HMM PF02585 YP_002748876.1 identified by match to protein family HMM PF00534 YP_002748877.1 catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity YP_002748878.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121; match to protein family HMM TIGR00122 YP_002748879.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002748880.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_002748881.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_002748882.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_002748883.1 unwinds DNA YP_002748885.1 identified by match to protein family HMM PF03413 YP_002748886.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002748887.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_002748888.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_002748890.1 identified by match to protein family HMM PF00041; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002748891.1 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC YP_002748893.1 identified by glimmer; putative YP_002748894.1 identified by glimmer; putative YP_002748895.1 identified by match to protein family HMM PF08807 YP_002748899.1 identified by match to protein family HMM PF06908 YP_002748900.1 identified by match to protein family HMM PF05103; match to protein family HMM TIGR03544 YP_002748901.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02926 YP_002748902.1 identified by glimmer; putative YP_002748904.1 identified by match to protein family HMM PF02074 YP_002748905.1 identified by match to protein family HMM PF00583 YP_002748906.1 identified by match to protein family HMM PF01636 YP_002748907.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_002748908.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_002748909.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_002748910.1 identified by match to protein family HMM PF04171; match to protein family HMM PF04235 YP_002748911.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002748912.1 identified by match to protein family HMM PF00350; match to protein family HMM PF01926 YP_002748913.1 identified by glimmer; putative YP_002748914.1 identified by match to protein family HMM PF00583 YP_002748916.1 identified by match to protein family HMM PF00581 YP_002748917.1 identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_002748920.1 identified by match to protein family HMM PF03738 YP_002748921.1 identified by match to protein family HMM PF03994 YP_002748923.1 identified by match to protein family HMM PF01367; match to protein family HMM PF02739 YP_002748925.1 identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451 YP_002748926.1 identified by match to protein family HMM PF00583 YP_002748927.1 identified by match to protein family HMM PF00857 YP_002748928.1 identified by glimmer; putative YP_002748929.1 identified by match to protein family HMM PF00892 YP_002748930.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_002748931.1 identified by match to protein family HMM PF01263 YP_002748932.1 identified by match to protein family HMM PF06177 YP_002748936.1 identified by match to protein family HMM PF00313 YP_002748937.1 identified by match to protein family HMM PF08892 YP_002748938.1 identified by match to protein family HMM PF01810 YP_002748939.1 identified by glimmer; putative YP_002748940.1 identified by match to protein family HMM PF04116 YP_002748941.1 identified by match to protein family HMM PF04341 YP_002748942.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813 YP_002748943.1 identified by match to protein family HMM PF00202 YP_002748944.1 identified by glimmer; putative YP_002748945.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00932 YP_002748946.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_002748947.1 identified by match to protein family HMM PF00376 YP_002748948.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002748949.1 identified by match to protein family HMM PF04239 YP_002748950.1 identified by glimmer; putative YP_002748951.1 identified by match to protein family HMM PF02698 YP_002748953.1 identified by match to protein family HMM PF00881 YP_002748954.1 identified by match to protein family HMM PF01965 YP_002748955.1 identified by match to protein family HMM PF01925 YP_002748956.1 identified by match to protein family HMM PF07690 YP_002748957.1 identified by match to protein family HMM PF01022 YP_002748958.1 identified by match to protein family HMM PF07690 YP_002748959.1 identified by match to protein family HMM PF00903 YP_002748960.1 identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732 YP_002748961.1 identified by match to protein family HMM PF09388 YP_002748962.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383 YP_002748963.1 identified by match to protein family HMM PF01966 YP_002748964.1 Homolog of MotA, appears to be involved in motility on surfaces and under different ionic conditions. With MotS (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. YP_002748965.1 Homolog to MotB, appears to be involved in motility on surfaces and under specific ionic conditions. With MotP (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_002748966.1 identified by match to protein family HMM PF00072 YP_002748967.1 identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194 YP_002748968.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002748969.1 identified by glimmer; putative YP_002748970.1 identified by glimmer; putative YP_002748971.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_002748975.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_002748976.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook YP_002748977.1 involved in flagellin assembly YP_002748980.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_002748981.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_002748982.1 forms a junction between the M-ring and FlgB during flagella biosynthesis YP_002748983.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_002748984.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002748985.1 binds to and inhibits the function of flagella specific ATPase FliI YP_002748986.1 involved in type III protein export during flagellum assembly YP_002748989.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod YP_002748990.1 the hook connects flagellar basal body to the flagellar filament YP_002748993.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584 YP_002748995.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_002748996.1 structural flagella protein YP_002748997.1 identified by match to protein family HMM PF01464 YP_002748998.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002748999.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_002749000.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002749002.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_002749003.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus YP_002749004.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus YP_002749005.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_002749006.1 membrane protein involved in the flagellar export apparatus YP_002749007.1 positive regulator of class III flagellar genes YP_002749008.1 makes up the distal portion of the flagellar basal body rod YP_002749009.1 identified by match to protein family HMM PF07973 YP_002749010.1 identified by match to protein family HMM PF01978 YP_002749011.1 identified by match to protein family HMM PF03591 YP_002749012.1 identified by match to protein family HMM PF05437 YP_002749013.1 identified by glimmer; putative YP_002749014.1 identified by match to protein family HMM PF00440 YP_002749017.1 identified by match to protein family HMM PF01738 YP_002749018.1 identified by match to protein family HMM PF03992 YP_002749019.1 identified by match to protein family HMM PF08141; match to protein family HMM TIGR02861 YP_002749020.1 identified by match to protein family HMM PF01381 YP_002749021.1 identified by match to protein family HMM PF07690 YP_002749023.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002749024.1 identified by match to protein family HMM PF00005 YP_002749025.1 identified by match to protein family HMM PF01547 YP_002749026.1 identified by match to protein family HMM PF00528 YP_002749027.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_002749030.1 identified by glimmer; putative YP_002749031.1 identified by match to protein family HMM PF00190 YP_002749034.1 identified by match to protein family HMM PF00300 YP_002749035.1 identified by glimmer; putative YP_002749036.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00561 YP_002749038.1 identified by match to protein family HMM PF01047 YP_002749040.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_002749041.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_002749043.1 identified by match to protein family HMM PF02012 YP_002749044.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002749045.1 identified by glimmer; putative YP_002749046.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002749047.1 identified by match to protein family HMM PF00892 YP_002749048.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_002749049.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749050.1 identified by match to protein family HMM PF03773 YP_002749051.1 identified by match to protein family HMM PF09323 YP_002749053.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM TIGR00931 YP_002749054.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_002749055.1 identified by glimmer; putative YP_002749056.1 identified by glimmer; putative YP_002749057.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749059.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002749060.1 identified by match to protein family HMM PF03575 YP_002749061.1 identified by glimmer; putative YP_002749062.1 identified by match to protein family HMM PF03965 YP_002749063.1 identified by match to protein family HMM PF01435; match to protein family HMM PF05569 YP_002749064.1 identified by match to protein family HMM PF02683 YP_002749065.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002749067.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002749068.1 identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766 YP_002749069.1 catalyzes the formation of pyruvate from serine YP_002749070.1 identified by match to protein family HMM PF04286 YP_002749073.1 identified by glimmer; putative YP_002749074.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: in B. thuringiensis this protein is involved in beta-exotoxin I production YP_002749075.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_002749076.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002749077.1 identified by match to protein family HMM PF00005 YP_002749078.1 identified by match to protein family HMM PF01061 YP_002749079.1 identified by match to protein family HMM PF01061 YP_002749080.1 identified by match to protein family HMM PF00614 YP_002749081.1 Catalyzes the phosphorylation of UMP to UDP YP_002749082.1 identified by match to protein family HMM PF00375 YP_002749083.1 catalyzes the formation of fumarate from aspartate YP_002749084.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_002749085.1 identified by match to protein family HMM PF02518 YP_002749086.1 identified by match to protein family HMM PF00072; match to protein family HMM PF08664 YP_002749088.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455 YP_002749089.1 identified by glimmer; putative YP_002749090.1 catalyzes the formation of asparagine from aspartate and ammonia YP_002749091.1 identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766 YP_002749092.1 identified by match to protein family HMM PF01381 YP_002749093.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002749094.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002749095.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_002749099.1 identified by match to protein family HMM PF00293 YP_002749100.1 identified by match to protein family HMM PF00395; match to protein family HMM PF01520 YP_002749101.1 identified by match to protein family HMM PF00395; match to protein family HMM PF01832 YP_002749102.1 identified by match to protein family HMM PF07690 YP_002749103.1 identified by glimmer; putative YP_002749105.1 identified by match to protein family HMM PF02554 YP_002749106.1 identified by match to protein family HMM PF03976 YP_002749107.1 identified by match to protein family HMM PF03551 YP_002749108.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002749109.1 identified by match to protein family HMM PF07690 YP_002749110.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis YP_002749111.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR03156 YP_002749112.1 identified by match to protein family HMM PF00496 YP_002749113.1 identified by match to protein family HMM PF07690 YP_002749114.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_002749115.1 identified by match to protein family HMM PF00583 YP_002749117.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002749118.1 identified by match to protein family HMM PF00209 YP_002749119.1 identified by match to protein family HMM PF01522 YP_002749121.1 identified by match to protein family HMM PF04239 YP_002749122.1 identified by match to protein family HMM PF07299 YP_002749124.1 identified by match to protein family HMM PF01210; match to protein family HMM PF03446; match to protein family HMM PF03807 YP_002749125.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002749126.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative YP_002749127.1 identified by glimmer; putative YP_002749128.1 identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401 YP_002749129.1 identified by match to protein family HMM PF00106 YP_002749130.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002749131.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_002749132.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, this subunit subunit is required for full activity and valine sensitivity; also known as acetolactate synthase small subunit YP_002749133.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_002749134.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_002749135.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic YP_002749136.1 identified by match to protein family HMM PF09587 YP_002749137.1 identified by match to protein family HMM PF04474 YP_002749139.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002749140.1 identified by match to protein family HMM PF02900 YP_002749141.1 identified by match to protein family HMM PF00561 YP_002749142.1 identified by match to protein family HMM PF00805 YP_002749143.1 identified by match to protein family HMM PF00144 YP_002749144.1 identified by match to protein family HMM PF04397 YP_002749145.1 identified by match to protein family HMM PF02550; match to protein family HMM TIGR03458 YP_002749146.1 identified by match to protein family HMM PF00583 YP_002749148.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_002749149.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749150.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749151.1 identified by match to protein family HMM PF09346 YP_002749153.1 identified by match to protein family HMM PF00589 YP_002749157.1 identified by glimmer; putative YP_002749158.1 identified by glimmer; putative YP_002749159.1 identified by match to protein family HMM PF01381 YP_002749160.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749161.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF09669; match to protein family HMM TIGR02681 YP_002749163.1 identified by glimmer; putative YP_002749164.1 identified by glimmer; putative YP_002749165.1 identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714 YP_002749167.1 identified by glimmer; putative YP_002749168.1 identified by glimmer; putative YP_002749169.1 identified by glimmer; putative YP_002749171.1 identified by match to protein family HMM PF03819 YP_002749172.1 identified by glimmer; putative YP_002749173.1 identified by match to protein family HMM PF09643; match to protein family HMM TIGR01671 YP_002749174.1 identified by glimmer; putative YP_002749175.1 identified by glimmer; putative YP_002749176.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative YP_002749178.1 identified by match to protein family HMM PF00145; match to protein family HMM TIGR00675 YP_002749179.1 identified by glimmer; putative YP_002749182.1 identified by glimmer; putative YP_002749183.1 identified by match to protein family HMM TIGR01637 YP_002749184.1 identified by match to protein family HMM PF00589 YP_002749185.1 identified by glimmer; putative YP_002749187.1 identified by glimmer; putative YP_002749189.1 identified by glimmer; putative YP_002749192.1 identified by match to protein family HMM PF03354 YP_002749193.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_002749194.1 identified by match to protein family HMM PF00574 YP_002749197.1 identified by match to protein family HMM TIGR01563 YP_002749200.1 identified by match to protein family HMM TIGR01603 YP_002749203.1 identified by match to protein family HMM TIGR01633 YP_002749204.1 identified by match to protein family HMM TIGR01665 YP_002749205.1 identified by match to protein family HMM PF00589 YP_002749207.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002749208.1 identified by match to protein family HMM PF01520 YP_002749209.1 identified by glimmer; putative YP_002749211.1 identified by match to protein family HMM PF00496 YP_002749212.1 identified by glimmer; putative YP_002749214.1 identified by glimmer; putative YP_002749215.1 identified by glimmer; putative YP_002749216.1 identified by match to protein family HMM PF04055 YP_002749217.1 identified by match to protein family HMM PF00583 YP_002749218.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002749219.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002749220.1 identified by match to protein family HMM PF01551 YP_002749221.1 identified by match to protein family HMM PF00561 YP_002749222.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_002749223.1 identified by match to protein family HMM PF00581 YP_002749224.1 identified by glimmer; putative YP_002749225.1 identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745 YP_002749227.1 identified by glimmer; putative YP_002749229.1 identified by match to protein family HMM PF05791 YP_002749230.1 identified by match to protein family HMM PF05791 YP_002749231.1 identified by match to protein family HMM PF05791 YP_002749232.1 identified by match to protein family HMM PF01810 YP_002749233.1 identified by match to protein family HMM PF04198 YP_002749234.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_002749235.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804 YP_002749236.1 Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway YP_002749237.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_002749238.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002749239.1 identified by match to protein family HMM PF05979 YP_002749240.1 identified by match to protein family HMM PF02683 YP_002749241.1 identified by match to protein family HMM PF02012 YP_002749242.1 identified by match to protein family HMM PF00557; match to protein family HMM PF05195 YP_002749243.1 identified by match to protein family HMM PF00394; match to protein family HMM PF07731; match to protein family HMM PF07732 YP_002749244.1 identified by match to protein family HMM PF00018; match to protein family HMM PF01551; match to protein family HMM PF06347; match to protein family HMM PF08239 YP_002749246.1 decatenates replicating daughter chromosomes YP_002749248.1 identified by match to protein family HMM PF01758 YP_002749249.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds YP_002749250.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002749251.1 identified by match to protein family HMM PF00903 YP_002749252.1 identified by match to protein family HMM PF04234; match to protein family HMM PF05425 YP_002749253.1 identified by match to protein family HMM PF07987 YP_002749255.1 identified by match to protein family HMM PF00892 YP_002749256.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002749257.1 identified by match to protein family HMM PF02082 YP_002749258.1 identified by match to protein family HMM PF01323 YP_002749259.1 identified by match to protein family HMM PF00881 YP_002749261.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_002749262.1 identified by match to protein family HMM PF01594 YP_002749263.1 Converts (S)-lactate and NAD(+) to pyruvate and NADH YP_002749264.1 identified by match to protein family HMM PF01593 YP_002749266.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_002749267.1 identified by match to protein family HMM PF00395 YP_002749268.1 identified by match to protein family HMM PF00440 YP_002749269.1 activates fatty acids by binding to coenzyme A YP_002749270.1 identified by match to protein family HMM PF01575 YP_002749271.1 identified by match to protein family HMM PF08541; match to protein family HMM PF08545 YP_002749272.1 identified by match to protein family HMM PF01094 YP_002749273.1 identified by match to protein family HMM PF00005 YP_002749274.1 identified by match to protein family HMM PF00005 YP_002749275.1 identified by match to protein family HMM PF02653 YP_002749276.1 identified by match to protein family HMM PF02653 YP_002749277.1 identified by match to protein family HMM PF00126 YP_002749280.1 identified by match to protein family HMM PF02627 YP_002749281.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03551 YP_002749282.1 identified by match to protein family HMM PF00296 YP_002749283.1 identified by match to protein family HMM PF01654 YP_002749284.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_002749285.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02857 YP_002749286.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02868 YP_002749287.1 identified by glimmer; putative YP_002749289.1 identified by match to protein family HMM PF02016 YP_002749290.1 identified by match to protein family HMM PF00144; match to protein family HMM PF00768 YP_002749291.1 identified by match to protein family HMM PF00881 YP_002749292.1 identified by match to protein family HMM PF00877; match to protein family HMM PF06347; match to protein family HMM PF08239 YP_002749293.1 identified by match to protein family HMM PF00561 YP_002749294.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002749295.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002749296.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002749297.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002749298.1 identified by match to protein family HMM PF01596 YP_002749299.1 identified by match to protein family HMM PF04439 YP_002749300.1 identified by match to protein family HMM PF01522 YP_002749303.1 identified by match to protein family HMM PF01243 YP_002749304.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002749305.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_002749306.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_002749309.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002749311.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002749312.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002749313.1 identified by match to protein family HMM PF01522 YP_002749315.1 identified by match to protein family HMM PF02308 YP_002749316.1 identified by match to protein family HMM PF00583 YP_002749317.1 identified by match to protein family HMM PF04183 YP_002749318.1 identified by match to protein family HMM PF04183 YP_002749319.1 activates fatty acids by binding to coenzyme A YP_002749320.1 Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides YP_002749322.1 identified by match to protein family HMM PF01261 YP_002749323.1 identified by match to protein family HMM PF00269 YP_002749324.1 identified by match to protein family HMM PF07690 YP_002749325.1 identified by match to protein family HMM PF01810 YP_002749326.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002749328.1 identified by match to protein family HMM PF01734 YP_002749329.1 identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732 YP_002749330.1 identified by match to protein family HMM PF09234 YP_002749332.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002749333.1 identified by match to protein family HMM PF00293 YP_002749334.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_002749337.1 identified by glimmer; putative YP_002749339.1 identified by glimmer; putative YP_002749341.1 identified by glimmer; putative YP_002749342.1 identified by glimmer; putative YP_002749343.1 identified by glimmer; putative YP_002749344.1 identified by glimmer; putative YP_002749346.1 identified by match to protein family HMM TIGR01558 YP_002749347.1 identified by glimmer; putative YP_002749348.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_002749349.1 identified by match to protein family HMM PF04586; match to protein family HMM PF05065; match to protein family HMM TIGR01543; match to protein family HMM TIGR01554 YP_002749350.1 identified by glimmer; putative YP_002749351.1 identified by glimmer; putative YP_002749352.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_002749353.1 identified by glimmer; putative YP_002749354.1 identified by match to protein family HMM PF02687 YP_002749355.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_002749356.1 identified by match to protein family HMM PF00082 YP_002749357.1 identified by match to protein family HMM PF01022 YP_002749358.1 identified by match to protein family HMM PF00248 YP_002749359.1 identified by match to protein family HMM PF07690 YP_002749363.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_002749364.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002749365.1 identified by glimmer; putative YP_002749366.1 identified by glimmer; putative YP_002749368.1 identified by match to protein family HMM PF00210 YP_002749369.1 identified by glimmer; putative YP_002749370.1 identified by glimmer; putative YP_002749371.1 identified by match to protein family HMM PF00296; match to protein family HMM TIGR03558 YP_002749372.1 identified by glimmer; putative YP_002749373.1 identified by match to protein family HMM PF01593 YP_002749374.1 identified by match to protein family HMM PF00583 YP_002749375.1 identified by match to protein family HMM PF00248 YP_002749376.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_002749377.1 identified by match to protein family HMM PF00583 YP_002749380.1 identified by match to protein family HMM PF06013 YP_002749381.1 identified by match to protein family HMM PF01297 YP_002749382.1 identified by glimmer; putative YP_002749383.1 identified by match to protein family HMM PF01370 YP_002749384.1 catalyzes the reduction of alpha, beta-unsaturated aldehydes and ketones; reduces the nitro group nitroester and nitroaromatic compounds YP_002749385.1 identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589 YP_002749386.1 identified by glimmer; putative YP_002749387.1 identified by match to protein family HMM PF00496 YP_002749388.1 catalyzes resistance to fosfomycin by the addition of a thiol cofactor YP_002749390.1 identified by match to protein family HMM PF00300 YP_002749391.1 identified by glimmer; putative YP_002749392.1 identified by match to protein family HMM PF08757 YP_002749393.1 identified by match to protein family HMM PF00293 YP_002749394.1 identified by match to protein family HMM PF09335 YP_002749395.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002749396.1 identified by match to protein family HMM PF01544 YP_002749397.1 identified by match to protein family HMM PF03773 YP_002749398.1 identified by match to protein family HMM PF09323 YP_002749399.1 identified by match to protein family HMM PF03061 YP_002749400.1 identified by match to protein family HMM PF00614 YP_002749401.1 identified by match to protein family HMM PF07875 YP_002749403.1 identified by match to protein family HMM PF02254 YP_002749404.1 identified by match to protein family HMM PF04306 YP_002749405.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_002749407.1 identified by match to protein family HMM PF00571 YP_002749408.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002749409.1 identified by match to protein family HMM PF01588; match to protein family HMM TIGR02222 YP_002749410.1 identified by match to protein family HMM PF07609 YP_002749411.1 identified by glimmer; putative YP_002749412.1 identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867 YP_002749413.1 identified by match to protein family HMM PF00583 YP_002749414.1 identified by match to protein family HMM PF02557 YP_002749415.1 identified by match to protein family HMM PF00293 YP_002749416.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_002749417.1 identified by match to protein family HMM PF07690 YP_002749418.1 identified by match to protein family HMM PF01957 YP_002749419.1 identified by match to protein family HMM PF01145 YP_002749420.1 identified by match to protein family HMM PF03241 YP_002749421.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339 YP_002749422.1 identified by match to protein family HMM PF06574 YP_002749423.1 catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde in the final enzymatic step of quinolinate biosynthesis YP_002749424.1 identified by match to protein family HMM PF04909 YP_002749425.1 identified by match to protein family HMM PF01042 YP_002749426.1 identified by match to protein family HMM PF00171 YP_002749427.1 identified by match to protein family HMM PF01689 YP_002749428.1 catalyzes the formation of acetyl-CoA from acetalaldehyde YP_002749429.1 catalyzes the formation of pyruvate and acetaldehyde from 4-hydroxy-2-ketovaleric acid; involved in the degradation of phenylpropionate YP_002749430.1 identified by match to protein family HMM PF01689 YP_002749431.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown YP_002749432.1 identified by match to protein family HMM PF00300 YP_002749433.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002749434.1 identified by glimmer; putative YP_002749435.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 YP_002749436.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002749437.1 identified by match to protein family HMM PF00583 YP_002749439.1 identified by match to protein family HMM PF00201; match to protein family HMM PF04101; match to protein family HMM TIGR01426 YP_002749440.1 identified by match to protein family HMM PF02588 YP_002749441.1 identified by match to protein family HMM PF00392 YP_002749442.1 identified by match to protein family HMM PF00583 YP_002749443.1 identified by match to protein family HMM PF00149 YP_002749444.1 identified by match to protein family HMM PF07853 YP_002749445.1 identified by match to protein family HMM PF00583 YP_002749447.1 identified by match to protein family HMM PF00583 YP_002749449.1 identified by glimmer; putative YP_002749451.1 identified by glimmer; putative YP_002749452.1 identified by glimmer; putative YP_002749453.1 identified by glimmer; putative YP_002749454.1 identified by glimmer; putative YP_002749456.1 identified by glimmer; putative YP_002749457.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749458.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749459.1 identified by glimmer; putative YP_002749461.1 identified by glimmer; putative YP_002749462.1 identified by glimmer; putative YP_002749463.1 identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874 YP_002749465.1 identified by glimmer; putative YP_002749466.1 identified by glimmer; putative YP_002749468.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002749469.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_002749471.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_002749473.1 identified by match to protein family HMM PF00903 YP_002749475.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002749476.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_002749477.1 identified by glimmer; putative YP_002749478.1 identified by glimmer; putative YP_002749479.1 identified by match to protein family HMM PF00753 YP_002749480.1 identified by glimmer; putative YP_002749481.1 identified by match to protein family HMM PF00255 YP_002749482.1 identified by match to protein family HMM PF01841 YP_002749483.1 identified by match to protein family HMM PF01882 YP_002749484.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728 YP_002749486.1 identified by glimmer; putative YP_002749487.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580 YP_002749488.1 identified by match to protein family HMM TIGR01660 YP_002749489.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684 YP_002749490.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351 YP_002749491.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_002749492.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666 YP_002749493.1 catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways YP_002749494.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_002749495.1 identified by match to protein family HMM PF02391 YP_002749496.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682 YP_002749497.1 identified by match to protein family HMM PF07690 YP_002749498.1 identified by glimmer; putative YP_002749499.1 identified by match to protein family HMM PF03547 YP_002749500.1 catalyzes the formation of siroheme from precorrin-2 YP_002749501.1 identified by match to protein family HMM PF01903 YP_002749502.1 this protein contains the C-terminal section of uroporphyrinogen-III methyltransferase fused with uroporphyrinogen-III synthase; studies on Clostridium josui indicate that this protein has uroporphyrinogen-III methylase activity; functions in tetrapyrrole and heme biosynthesis YP_002749503.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378 YP_002749504.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374 YP_002749505.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04405; match to protein family HMM TIGR03652 YP_002749506.1 identified by glimmer; putative YP_002749507.1 identified by match to protein family HMM PF05901 YP_002749508.1 identified by glimmer; putative YP_002749509.1 identified by glimmer; putative YP_002749510.1 identified by match to protein family HMM PF00797 YP_002749511.1 identified by match to protein family HMM PF07819 YP_002749512.1 identified by match to protein family HMM PF04232 YP_002749513.1 identified by glimmer; putative YP_002749517.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749519.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002749520.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002749525.1 identified by glimmer; putative YP_002749526.1 identified by match to protein family HMM PF01966 YP_002749527.1 identified by match to protein family HMM PF00005 YP_002749528.1 identified by match to protein family HMM PF06539 YP_002749529.1 identified by glimmer; putative YP_002749530.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_002749531.1 identified by match to protein family HMM PF00440 YP_002749533.1 identified by match to protein family HMM PF03130 YP_002749534.1 identified by glimmer; putative YP_002749535.1 identified by match to protein family HMM PF06491 YP_002749537.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002749538.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002749539.1 identified by match to protein family HMM PF03372 YP_002749540.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002749541.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_002749542.1 identified by match to protein family HMM PF03413; match to protein family HMM PF07504 YP_002749543.1 identified by glimmer; putative YP_002749544.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01225; match to protein family HMM PF08245 YP_002749545.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002749549.1 identified by match to protein family HMM PF01580 YP_002749550.1 identified by match to protein family HMM PF06013 YP_002749551.1 identified by match to protein family HMM PF00515 YP_002749556.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_002749557.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_002749560.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002749564.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_002749565.1 identified by match to protein family HMM PF01548; match to protein family HMM PF02371 YP_002749566.1 identified by glimmer; putative YP_002749567.1 identified by glimmer; putative YP_002749568.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_002749569.1 identified by match to protein family HMM PF00939; match to protein family HMM PF03600 YP_002749570.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002749571.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002749572.1 identified by match to protein family HMM PF03413 YP_002749573.1 identified by match to protein family HMM PF03413 YP_002749574.1 identified by match to protein family HMM PF00209 YP_002749575.1 identified by match to protein family HMM PF00561 YP_002749576.1 identified by match to protein family HMM PF06042 YP_002749578.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002749579.1 identified by match to protein family HMM PF03600 YP_002749580.1 identified by match to protein family HMM PF00465 YP_002749581.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035 YP_002749582.1 identified by match to protein family HMM PF01980 YP_002749583.1 identified by match to protein family HMM PF00583 YP_002749584.1 identified by match to protein family HMM TIGR01656; match to protein family HMM TIGR01662 YP_002749585.1 identified by match to protein family HMM PF00583 YP_002749586.1 identified by match to protein family HMM PF00005 YP_002749589.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002749590.1 identified by match to protein family HMM PF00903 YP_002749591.1 identified by match to protein family HMM PF01636 YP_002749592.1 identified by glimmer; putative YP_002749593.1 identified by match to protein family HMM PF00144 YP_002749594.1 identified by match to protein family HMM PF05592; match to protein family HMM PF08531 YP_002749595.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_002749596.1 identified by match to protein family HMM PF00186 YP_002749597.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223 YP_002749598.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds YP_002749599.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530 YP_002749600.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_002749601.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_002749602.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_002749604.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002749606.1 identified by match to protein family HMM PF02630 YP_002749607.1 identified by match to protein family HMM PF00011; match to protein family HMM PF04969 YP_002749608.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_002749609.1 identified by match to protein family HMM PF00583 YP_002749610.1 identified by glimmer; putative YP_002749611.1 identified by match to protein family HMM PF01569 YP_002749612.1 identified by match to protein family HMM PF01497 YP_002749613.1 catalyzes the transamination of D-amino acids and their alpha-keto acids YP_002749614.1 identified by match to protein family HMM PF00881 YP_002749616.1 identified by glimmer; putative YP_002749617.1 identified by match to protein family HMM PF00857 YP_002749618.1 identified by match to protein family HMM PF00293 YP_002749619.1 identified by match to protein family HMM PF00011 YP_002749620.1 identified by match to protein family HMM PF00924 YP_002749621.1 identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002749622.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281 YP_002749623.1 identified by match to protein family HMM PF01380 YP_002749624.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs YP_002749625.1 identified by match to protein family HMM PF00528 YP_002749626.1 identified by match to protein family HMM PF00528 YP_002749627.1 identified by match to protein family HMM PF00144 YP_002749628.1 identified by match to protein family HMM PF05139 YP_002749630.1 identified by match to protein family HMM PF00535 YP_002749632.1 identified by match to protein family HMM PF03358 YP_002749633.1 identified by match to protein family HMM PF07690 YP_002749634.1 identified by match to protein family HMM PF02698 YP_002749635.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01186 YP_002749636.1 identified by match to protein family HMM PF00528; match to protein family HMM PF04069 YP_002749637.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905 YP_002749639.1 identified by match to protein family HMM PF07728 YP_002749640.1 identified by glimmer; putative YP_002749641.1 identified by glimmer; putative YP_002749642.1 remodeling and anchoring of the chromosome protein; in Bacillus subtilis this protein functions in polar chromosome segregation during sporulation; binds inverted sequence motifs called ram along the chromosome; condenses DNA via RacA-RacA interactions YP_002749643.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_002749644.1 identified by match to protein family HMM PF00171 YP_002749645.1 identified by match to protein family HMM PF07997 YP_002749646.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF09385 YP_002749648.1 identified by glimmer; putative YP_002749649.1 identified by match to protein family HMM PF00202 YP_002749650.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_002749651.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_002749652.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_002749653.1 identified by match to protein family HMM PF00583 YP_002749654.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_002749655.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238 YP_002749657.1 identified by match to protein family HMM PF06855 YP_002749659.1 identified by glimmer; putative YP_002749661.1 identified by glimmer; putative YP_002749663.1 identified by match to protein family HMM PF07070 YP_002749664.1 identified by match to protein family HMM PF01569 YP_002749665.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002749666.1 identified by match to protein family HMM PF00085 YP_002749667.1 identified by glimmer; putative YP_002749668.1 identified by glimmer; putative YP_002749669.1 identified by match to protein family HMM PF01042 YP_002749670.1 identified by glimmer; putative YP_002749673.1 identified by glimmer; putative YP_002749675.1 identified by glimmer; putative YP_002749676.1 identified by glimmer; putative YP_002749677.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein YP_002749678.1 identified by glimmer; putative YP_002749679.1 identified by glimmer; putative YP_002749680.1 identified by match to protein family HMM PF08863 YP_002749682.1 identified by glimmer; putative YP_002749684.1 identified by match to protein family HMM PF00106 YP_002749686.1 identified by match to protein family HMM PF01679 YP_002749687.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002749688.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749689.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749690.1 identified by match to protein family HMM PF01521 YP_002749691.1 forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle, glyoxylate cycle and respiration YP_002749692.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C YP_002749693.1 identified by match to protein family HMM TIGR02317 YP_002749695.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002749696.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807 YP_002749697.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_002749698.1 identified by match to protein family HMM PF01810 YP_002749699.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA YP_002749700.1 identified by glimmer; putative YP_002749702.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619 YP_002749703.1 identified by match to protein family HMM PF02463 YP_002749704.1 identified by glimmer; putative YP_002749705.1 identified by match to protein family HMM PF01022 YP_002749707.1 identified by glimmer; putative YP_002749708.1 identified by match to protein family HMM PF07690 YP_002749709.1 catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin YP_002749710.1 synthesizes isochorismate from chorismate as part of the biosynthesis of the siderophore 2,3-dihydroxybenzoate; can also be used in menaquinone synthesis YP_002749711.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR02275 YP_002749712.1 identified by match to protein family HMM PF00550; match to protein family HMM PF00857 YP_002749713.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733 YP_002749714.1 identified by match to protein family HMM PF03621 YP_002749715.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002749716.1 identified by match to protein family HMM PF01648 YP_002749718.1 identified by match to protein family HMM PF00216 YP_002749720.1 identified by match to protein family HMM PF05163 YP_002749721.1 identified by match to protein family HMM PF00082 YP_002749722.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002749723.1 identified by glimmer; putative YP_002749724.1 identified by glimmer; putative YP_002749726.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002749727.1 identified by glimmer; putative YP_002749728.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); Bacillus have two copies of the threonyl-tRNA synthetase, threonine starvation induces both proteins YP_002749730.1 identified by match to protein family HMM PF00005 YP_002749731.1 identified by match to protein family HMM PF02687 YP_002749732.1 identified by match to protein family HMM PF00561 YP_002749733.1 identified by match to protein family HMM PF07690 YP_002749735.1 identified by match to protein family HMM PF00528 YP_002749736.1 identified by match to protein family HMM PF02535 YP_002749737.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002749740.1 identified by match to protein family HMM PF00753 YP_002749741.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01156 YP_002749742.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749743.1 identified by glimmer; putative YP_002749745.1 identified by match to protein family HMM PF00583 YP_002749746.1 identified by match to protein family HMM PF00753 YP_002749747.1 identified by match to protein family HMM PF00440 YP_002749748.1 identified by match to protein family HMM PF03176 YP_002749749.1 identified by glimmer; putative YP_002749750.1 identified by match to protein family HMM PF00302 YP_002749751.1 identified by match to protein family HMM PF00583 YP_002749752.1 identified by match to protein family HMM PF00583; match to protein family HMM PF00805 YP_002749753.1 identified by match to protein family HMM PF00583 YP_002749754.1 identified by match to protein family HMM PF00892 YP_002749755.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002749756.1 identified by glimmer; putative YP_002749757.1 identified by match to protein family HMM PF09388 YP_002749758.1 identified by match to protein family HMM PF00561 YP_002749759.1 catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX YP_002749760.1 identified by glimmer; putative YP_002749761.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002749762.1 identified by match to protein family HMM PF00583 YP_002749764.1 identified by match to protein family HMM PF00313 YP_002749765.1 identified by match to protein family HMM PF02517 YP_002749768.1 identified by glimmer; putative YP_002749769.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002749770.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_002749771.1 identified by match to protein family HMM PF03417 YP_002749772.1 identified by glimmer; putative YP_002749773.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002749774.1 identified by match to protein family HMM PF03473; match to protein family HMM PF03475 YP_002749775.1 identified by match to protein family HMM PF00583 YP_002749776.1 identified by match to protein family HMM PF07081 YP_002749777.1 identified by glimmer; putative YP_002749778.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002749779.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002749780.1 identified by match to protein family HMM PF01520 YP_002749781.1 identified by match to protein family HMM PF01810 YP_002749782.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002749783.1 identified by glimmer; putative YP_002749784.1 identified by match to protein family HMM PF01391 YP_002749786.1 identified by match to protein family HMM PF01391 YP_002749788.1 identified by match to protein family HMM PF01966; match to protein family HMM PF02824 YP_002749789.1 identified by glimmer; putative YP_002749790.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01593 YP_002749791.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_002749792.1 identified by glimmer; putative YP_002749793.1 identified by match to protein family HMM PF01596; match to protein family HMM PF08241 YP_002749794.1 identified by match to protein family HMM PF05816 YP_002749795.1 identified by glimmer; putative YP_002749796.1 identified by match to protein family HMM PF02638 YP_002749797.1 identified by glimmer; putative YP_002749798.1 identified by match to protein family HMM PF02302 YP_002749799.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002749801.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_002749802.1 identified by match to protein family HMM PF01869 YP_002749803.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_002749804.1 identified by match to protein family HMM PF00266 YP_002749805.1 catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic YP_002749806.1 identified by match to protein family HMM PF06803 YP_002749807.1 identified by match to protein family HMM PF09346 YP_002749808.1 identified by glimmer; putative YP_002749809.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749810.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749812.1 identified by match to protein family HMM PF00753 YP_002749813.1 identified by glimmer; putative YP_002749814.1 identified by glimmer; putative YP_002749815.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002749816.1 identified by glimmer; putative YP_002749817.1 identified by glimmer; putative YP_002749819.1 identified by match to protein family HMM PF00440 YP_002749820.1 identified by match to protein family HMM PF07690 YP_002749821.1 identified by match to protein family HMM PF02687 YP_002749822.1 identified by match to protein family HMM PF00005 YP_002749823.1 identified by match to protein family HMM PF03848; match to protein family HMM PF05724; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002749824.1 identified by match to protein family HMM PF00903; match to protein family HMM PF06983 YP_002749825.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749826.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749827.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00589 YP_002749828.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002749829.1 identified by glimmer; putative YP_002749831.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749832.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749834.1 identified by match to protein family HMM PF01391 YP_002749835.1 identified by match to protein family HMM PF00386 YP_002749836.1 identified by glimmer; putative YP_002749838.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749839.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749843.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00205 YP_002749844.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749845.1 identified by match to protein family HMM PF01047 YP_002749846.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_002749847.1 identified by glimmer; putative YP_002749848.1 identified by glimmer; putative YP_002749849.1 identified by glimmer; putative YP_002749850.1 identified by glimmer; putative YP_002749851.1 identified by glimmer; putative YP_002749853.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 YP_002749854.1 identified by glimmer; putative YP_002749855.1 identified by glimmer; putative YP_002749856.1 identified by match to protein family HMM PF00132 YP_002749857.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00144; match to protein family HMM PF00768; match to protein family HMM PF07943 YP_002749858.1 identified by match to protein family HMM PF00657 YP_002749859.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223 YP_002749860.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002749861.1 identified by glimmer; putative YP_002749862.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002749863.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002749864.1 identified by match to protein family HMM PF00144 YP_002749865.1 identified by glimmer; putative YP_002749866.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002749867.1 identified by match to protein family HMM PF07690 YP_002749868.1 identified by glimmer; putative YP_002749869.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002749870.1 identified by match to protein family HMM PF00294 YP_002749871.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_002749872.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_002749873.1 identified by match to protein family HMM PF01261 YP_002749874.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_002749875.1 identified by match to protein family HMM PF06845 YP_002749876.1 identified by glimmer; putative YP_002749878.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749879.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01784 YP_002749880.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_002749883.1 identified by match to protein family HMM PF01381 YP_002749885.1 identified by match to protein family HMM PF02557 YP_002749887.1 identified by match to protein family HMM PF00395; match to protein family HMM PF01520 YP_002749888.1 identified by match to protein family HMM PF07968; match to protein family HMM TIGR01002 YP_002749889.1 identified by match to protein family HMM PF00440 YP_002749890.1 identified by match to protein family HMM PF00005 YP_002749891.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002749892.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002749893.1 identified by match to protein family HMM PF00583 YP_002749894.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002749897.1 identified by match to protein family HMM PF07992 YP_002749898.1 identified by match to protein family HMM PF00581; match to protein family HMM PF00753 YP_002749900.1 identified by glimmer; putative YP_002749901.1 identified by glimmer; putative YP_002749902.1 identified by glimmer; putative YP_002749903.1 identified by match to protein family HMM PF04463; match to protein family HMM PF08349 YP_002749904.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002749905.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002749906.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002749907.1 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA YP_002749908.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002749909.1 identified by match to protein family HMM PF01039 YP_002749910.1 identified by match to protein family HMM PF00501 YP_002749911.1 identified by glimmer; putative YP_002749912.1 identified by match to protein family HMM PF00583 YP_002749913.1 identified by glimmer; putative YP_002749914.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749915.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749916.1 identified by match to protein family HMM PF05163 YP_002749917.1 identified by match to protein family HMM PF00768 YP_002749918.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002749919.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002749920.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01966 YP_002749921.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749922.1 Enables the cleavage of the glycosidic bond in S-adenosylhomocysteine YP_002749924.1 identified by match to protein family HMM PF00583 YP_002749925.1 identified by glimmer; putative YP_002749929.1 identified by match to protein family HMM PF08327 YP_002749930.1 identified by match to protein family HMM PF00005 YP_002749931.1 identified by match to protein family HMM PF03551 YP_002749933.1 identified by match to protein family HMM PF00144 YP_002749934.1 identified by match to protein family HMM PF00376; match to protein family HMM PF06445 YP_002749935.1 identified by match to protein family HMM PF07690 YP_002749937.1 identified by match to protein family HMM PF08241 YP_002749939.1 identified by match to protein family HMM PF01636 YP_002749942.1 identified by match to protein family HMM PF01432; match to protein family HMM TIGR02289 YP_002749944.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002749947.1 identified by glimmer; putative YP_002749948.1 identified by glimmer; putative YP_002749949.1 identified by glimmer; putative YP_002749951.1 identified by glimmer; putative YP_002749952.1 identified by match to protein family HMM PF05724; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002749953.1 identified by match to protein family HMM PF03848; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002749954.1 identified by match to protein family HMM PF08450 YP_002749956.1 identified by match to protein family HMM PF01921; match to protein family HMM TIGR00467 YP_002749957.1 identified by match to protein family HMM PF07486 YP_002749958.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03069 YP_002749959.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002749960.1 identified by match to protein family HMM PF02518 YP_002749962.1 identified by match to protein family HMM PF00005 YP_002749963.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749964.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749965.1 identified by glimmer; putative YP_002749966.1 identified by match to protein family HMM PF00005 YP_002749967.1 identified by match to protein family HMM PF02687 YP_002749969.1 identified by glimmer; putative YP_002749971.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002749972.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002749973.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002749974.1 identified by match to protein family HMM PF03070 YP_002749975.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002749976.1 identified by glimmer; putative YP_002749978.1 identified by glimmer; putative YP_002749979.1 identified by glimmer; putative YP_002749981.1 identified by glimmer; putative YP_002749985.1 identified by glimmer; putative YP_002749987.1 identified by glimmer; putative YP_002749988.1 identified by match to protein family HMM PF08874 YP_002749989.1 identified by glimmer; putative YP_002749990.1 identified by match to protein family HMM PF00067 YP_002749991.1 identified by match to protein family HMM PF07690 YP_002749992.1 identified by match to protein family HMM PF00132 YP_002749993.1 identified by match to protein family HMM PF07561 YP_002749994.1 identified by match to protein family HMM PF03551 YP_002749995.1 identified by match to protein family HMM PF00067 YP_002749996.1 identified by match to protein family HMM PF05995 YP_002749997.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002749998.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_002749999.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002750000.1 identified by match to protein family HMM PF00201; match to protein family HMM PF04101; match to protein family HMM TIGR01426 YP_002750001.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035 YP_002750002.1 identified by match to protein family HMM PF07155 YP_002750003.1 identified by match to protein family HMM PF00005 YP_002750004.1 identified by match to protein family HMM PF02361 YP_002750005.1 identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732 YP_002750006.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07694 YP_002750008.1 identified by match to protein family HMM PF04229 YP_002750009.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002750010.1 identified by match to protein family HMM PF01569 YP_002750011.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793 YP_002750012.1 identified by match to protein family HMM PF00440; match to protein family HMM PF08360 YP_002750013.1 identified by match to protein family HMM PF00106 YP_002750014.1 identified by match to protein family HMM PF07690 YP_002750015.1 identified by match to protein family HMM PF00144 YP_002750016.1 identified by match to protein family HMM PF00583 YP_002750018.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002750019.1 identified by match to protein family HMM PF01965 YP_002750020.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002750021.1 identified by match to protein family HMM PF08279 YP_002750022.1 identified by match to protein family HMM PF01965 YP_002750023.1 identified by glimmer; putative YP_002750024.1 identified by match to protein family HMM PF00144 YP_002750025.1 identified by match to protein family HMM PF03966; match to protein family HMM PF08241 YP_002750026.1 identified by match to protein family HMM PF07690 YP_002750027.1 identified by glimmer; putative YP_002750028.1 identified by match to protein family HMM PF00583 YP_002750029.1 identified by match to protein family HMM PF03009 YP_002750032.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002750033.1 identified by glimmer; putative YP_002750034.1 identified by match to protein family HMM PF00892 YP_002750035.1 identified by match to protein family HMM PF00583 YP_002750037.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002750038.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002750039.1 identified by glimmer; putative YP_002750040.1 identified by match to protein family HMM PF00144 YP_002750041.1 identified by glimmer; putative YP_002750042.1 identified by match to protein family HMM PF07690 YP_002750043.1 identified by match to protein family HMM PF00293 YP_002750044.1 binds the polymerase to DNA and acts as a sliding clamp YP_002750045.1 identified by match to protein family HMM PF00293 YP_002750046.1 identified by match to protein family HMM PF00561 YP_002750050.1 identified by match to protein family HMM PF00300 YP_002750051.1 identified by match to protein family HMM PF01042 YP_002750052.1 identified by match to protein family HMM PF09234 YP_002750053.1 identified by match to protein family HMM PF09350 YP_002750054.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00756 YP_002750055.1 identified by glimmer; putative YP_002750057.1 identified by match to protein family HMM PF01734 YP_002750058.1 identified by match to protein family HMM PF08000 YP_002750059.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002750060.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002750062.1 identified by match to protein family HMM PF00583 YP_002750064.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002750065.1 identified by glimmer; putative YP_002750066.1 identified by match to protein family HMM PF01541 YP_002750070.1 identified by glimmer; putative YP_002750072.1 identified by glimmer; putative YP_002750073.1 identified by match to protein family HMM PF00293 YP_002750074.1 identified by match to protein family HMM PF01266 YP_002750076.1 identified by match to protein family HMM PF00797 YP_002750077.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002750078.1 identified by glimmer; putative YP_002750079.1 identified by match to protein family HMM PF08921 YP_002750080.1 identified by match to protein family HMM PF01569 YP_002750082.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02806; match to protein family HMM PF02922; match to protein family HMM PF03714; match to protein family HMM TIGR02104 YP_002750083.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504 YP_002750085.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in B. subtilis has been shown to regulate cell envelope modification and may effect antibiotic resistance YP_002750086.1 identified by match to protein family HMM PF06445 YP_002750088.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002750089.1 identified by glimmer; putative YP_002750090.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151 YP_002750091.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002750092.1 identified by match to protein family HMM PF00561 YP_002750094.1 identified by glimmer; putative YP_002750095.1 identified by glimmer; putative YP_002750096.1 identified by match to protein family HMM PF08002 YP_002750097.1 identified by match to protein family HMM PF06081 YP_002750098.1 identified by match to protein family HMM PF00583 YP_002750100.1 identified by match to protein family HMM PF09580; match to protein family HMM TIGR02898 YP_002750101.1 identified by match to protein family HMM PF03413; match to protein family HMM TIGR02889 YP_002750102.1 identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869 YP_002750104.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002750105.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00144 YP_002750106.1 identified by match to protein family HMM PF03301; match to protein family HMM TIGR03036 YP_002750107.1 identified by match to protein family HMM PF04199; match to protein family HMM TIGR03035 YP_002750108.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01814 YP_002750109.1 identified by match to protein family HMM PF00440 YP_002750110.1 identified by match to protein family HMM PF00293 YP_002750111.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002750113.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002750114.1 identified by glimmer; putative YP_002750115.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_002750116.1 identified by glimmer; putative YP_002750117.1 identified by glimmer; putative YP_002750118.1 identified by match to protein family HMM PF00583 YP_002750119.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002750121.1 identified by match to protein family HMM PF03848; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002750122.1 identified by match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002750123.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_002750124.1 identified by glimmer; putative YP_002750125.1 identified by glimmer; putative YP_002750126.1 E3 component of acetoin cleaving system; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_002750127.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_002750128.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002750129.1 identified by match to protein family HMM PF00676 YP_002750131.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002750132.1 identified by match to protein family HMM PF04229 YP_002750133.1 identified by match to protein family HMM PF00485 YP_002750135.1 identified by match to protein family HMM PF00293 YP_002750138.1 identified by match to protein family HMM PF01230 YP_002750139.1 identified by glimmer; putative YP_002750140.1 identified by match to protein family HMM PF00528 YP_002750141.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_002750142.1 identified by match to protein family HMM PF04069 YP_002750143.1 identified by match to protein family HMM PF00574; match to protein family HMM TIGR00493 YP_002750144.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_002750145.1 identified by match to protein family HMM PF00111 YP_002750146.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_002750147.1 identified by match to protein family HMM PF00583 YP_002750148.1 identified by match to protein family HMM PF00041; match to protein family HMM PF02839; match to protein family HMM PF03067 YP_002750149.1 In Listeria monocytogenes this protein binds a specific sites on DNA, influencing the topology and transcription; regulates flaA, proU and ompC; is osmoregulated YP_002750152.1 identified by match to protein family HMM PF02353; match to protein family HMM PF05401; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002750153.1 identified by match to protein family HMM PF04237 YP_002750154.1 identified by match to protein family HMM PF00583 YP_002750155.1 identified by match to protein family HMM PF00395; match to protein family HMM PF00753 YP_002750157.1 identified by match to protein family HMM PF01183 YP_002750158.1 identified by match to protein family HMM PF00583 YP_002750159.1 identified by glimmer; putative YP_002750160.1 identified by glimmer; putative YP_002750161.1 identified by match to protein family HMM PF00583 YP_002750163.1 identified by match to protein family HMM PF03551 YP_002750164.1 identified by match to protein family HMM PF06108 YP_002750165.1 identified by match to protein family HMM PF00580 YP_002750166.1 identified by match to protein family HMM PF02517 YP_002750167.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002750168.1 identified by match to protein family HMM PF06094 YP_002750169.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_002750170.1 identified by glimmer; putative YP_002750172.1 identified by glimmer; putative YP_002750173.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002750175.1 identified by glimmer; putative YP_002750177.1 identified by match to protein family HMM PF01432; match to protein family HMM TIGR02289 YP_002750178.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_002750179.1 identified by match to protein family HMM PF03067 YP_002750180.1 identified by match to protein family HMM PF00583 YP_002750181.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_002750182.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002750183.1 identified by match to protein family HMM PF00171 YP_002750184.1 identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674 YP_002750185.1 identified by glimmer; putative YP_002750186.1 identified by match to protein family HMM PF05544 YP_002750187.1 identified by match to protein family HMM PF01266 YP_002750188.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR00229 YP_002750189.1 identified by glimmer; putative YP_002750190.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00111 YP_002750191.1 identified by match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002750193.1 identified by glimmer; putative YP_002750194.1 identified by match to protein family HMM PF08876 YP_002750195.1 identified by match to protein family HMM PF09335 YP_002750197.1 identified by glimmer; putative YP_002750198.1 identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918 YP_002750199.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00583 YP_002750200.1 identified by match to protein family HMM PF00496 YP_002750201.1 identified by match to protein family HMM PF00877 YP_002750202.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_002750204.1 identified by match to protein family HMM PF04977 YP_002750206.1 identified by match to protein family HMM PF00383 YP_002750208.1 identified by glimmer; putative YP_002750209.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002750210.1 identified by glimmer; putative YP_002750211.1 catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue YP_002750212.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002750213.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002750214.1 identified by glimmer; putative YP_002750215.1 identified by match to protein family HMM PF00583 YP_002750217.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_002750218.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_002750219.1 identified by match to protein family HMM PF01432 YP_002750220.1 identified by match to protein family HMM PF00324 YP_002750221.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01037 YP_002750222.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002750223.1 identified by match to protein family HMM PF07552 YP_002750225.1 identified by match to protein family HMM PF07552 YP_002750226.1 identified by match to protein family HMM PF00583 YP_002750227.1 identified by glimmer; putative YP_002750228.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002750230.1 identified by match to protein family HMM PF04519 YP_002750232.1 identified by match to protein family HMM PF00496 YP_002750233.1 identified by match to protein family HMM PF07690 YP_002750235.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002750236.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002750237.1 identified by glimmer; putative YP_002750238.1 identified by match to protein family HMM PF04226 YP_002750239.1 identified by match to protein family HMM PF01156 YP_002750240.1 identified by glimmer; putative YP_002750241.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002750242.1 identified by glimmer; putative YP_002750243.1 identified by glimmer; putative YP_002750244.1 identified by glimmer; putative YP_002750245.1 identified by match to protein family HMM PF07690 YP_002750248.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002750249.1 identified by match to protein family HMM PF07977 YP_002750250.1 catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type II pantothenate kinases are not regulated by feedback inhibition by coenzyme A YP_002750254.1 identified by match to protein family HMM PF00005 YP_002750255.1 identified by match to protein family HMM PF00392 YP_002750256.1 identified by glimmer; putative YP_002750257.1 identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413 YP_002750258.1 identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413 YP_002750259.1 identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413 YP_002750260.1 identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413 YP_002750261.1 identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413 YP_002750262.1 identified by match to protein family HMM PF01594 YP_002750263.1 identified by glimmer; putative YP_002750264.1 catalyzes the release of sulfite from alkanesulfonates YP_002750265.1 identified by match to protein family HMM PF00528 YP_002750266.1 identified by match to protein family HMM PF04069; match to protein family HMM PF09084; match to protein family HMM TIGR01728 YP_002750267.1 identified by match to protein family HMM PF00005 YP_002750268.1 identified by match to protein family HMM PF04167 YP_002750269.1 identified by match to protein family HMM PF00293 YP_002750271.1 identified by match to protein family HMM PF07719 YP_002750272.1 identified by match to protein family HMM PF04127 YP_002750273.1 identified by match to protein family HMM PF02522 YP_002750275.1 identified by match to protein family HMM PF03738 YP_002750277.1 identified by glimmer; putative YP_002750278.1 identified by match to protein family HMM PF00583 YP_002750281.1 identified by match to protein family HMM PF00583 YP_002750282.1 identified by match to protein family HMM PF00583 YP_002750284.1 identified by match to protein family HMM PF06352 YP_002750286.1 identified by glimmer; putative YP_002750287.1 identified by match to protein family HMM PF01522 YP_002750288.1 identified by glimmer; putative YP_002750289.1 identified by match to protein family HMM PF03741 YP_002750290.1 identified by match to protein family HMM PF00884 YP_002750291.1 identified by match to protein family HMM PF00005 YP_002750292.1 identified by glimmer; putative YP_002750294.1 identified by match to protein family HMM PF00440 YP_002750295.1 identified by match to protein family HMM PF00583 YP_002750296.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_002750297.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate YP_002750298.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_002750299.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002750300.1 catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate YP_002750303.1 identified by match to protein family HMM PF00857 YP_002750304.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00583 YP_002750305.1 identified by glimmer; putative YP_002750308.1 identified by match to protein family HMM PF06347; match to protein family HMM PF06725; match to protein family HMM PF08239 YP_002750309.1 identified by match to protein family HMM PF00583 YP_002750310.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600 YP_002750311.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002750312.1 identified by match to protein family HMM PF00501 YP_002750313.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954 YP_002750315.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_002750317.1 identified by match to protein family HMM PF02653 YP_002750318.1 identified by glimmer; putative YP_002750319.1 identified by match to protein family HMM PF02653 YP_002750320.1 identified by match to protein family HMM PF00005 YP_002750321.1 identified by match to protein family HMM PF04198 YP_002750322.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_002750323.1 identified by match to protein family HMM PF07883 YP_002750324.1 identified by match to protein family HMM PF01791 YP_002750325.1 identified by match to protein family HMM PF00583 YP_002750329.1 identified by match to protein family HMM PF03992 YP_002750330.1 identified by match to protein family HMM PF07690 YP_002750331.1 identified by match to protein family HMM PF01022 YP_002750333.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM TIGR00804 YP_002750334.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_002750335.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_002750336.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_002750337.1 identified by match to protein family HMM PF01546 YP_002750338.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339 YP_002750339.1 identified by match to protein family HMM PF00324 YP_002750340.1 identified by match to protein family HMM PF01139 YP_002750341.1 identified by match to protein family HMM PF00487 YP_002750342.1 identified by match to protein family HMM PF00245 YP_002750349.1 identified by match to protein family HMM PF04397 YP_002750350.1 Phosphoprylates nucleosides or dinucleosides to make UMP or CMP as part of the pyrimidine salvage pathway YP_002750351.1 identified by match to protein family HMM PF00583 YP_002750352.1 identified by match to protein family HMM PF00903 YP_002750355.1 identified by match to protein family HMM PF03551 YP_002750356.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728 YP_002750357.1 identified by match to protein family HMM PF01882 YP_002750359.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002750360.1 identified by match to protein family HMM PF00535 YP_002750361.1 identified by glimmer; putative YP_002750362.1 identified by match to protein family HMM PF00535 YP_002750363.1 identified by match to protein family HMM PF00535 YP_002750365.1 identified by match to protein family HMM PF00202 YP_002750366.1 identified by match to protein family HMM PF00199 YP_002750368.1 identified by match to protein family HMM PF01979 YP_002750369.1 identified by match to protein family HMM PF00144 YP_002750370.1 identified by glimmer; putative YP_002750372.1 identified by match to protein family HMM PF09346 YP_002750373.1 identified by match to protein family HMM PF03992 YP_002750374.1 identified by match to protein family HMM PF00881 YP_002750375.1 identified by match to protein family HMM PF01047 YP_002750376.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002750377.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF03764 YP_002750379.1 identified by match to protein family HMM PF00293 YP_002750380.1 identified by glimmer; putative YP_002750382.1 identified by match to protein family HMM PF00005 YP_002750383.1 identified by match to protein family HMM PF00392 YP_002750384.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF09346 YP_002750386.1 identified by match to protein family HMM PF00005 YP_002750387.1 identified by match to protein family HMM PF02687 YP_002750388.1 identified by match to protein family HMM PF02687 YP_002750389.1 identified by glimmer; putative YP_002750390.1 identified by match to protein family HMM PF00144 YP_002750391.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_002750392.1 identified by match to protein family HMM PF00583 YP_002750393.1 identified by glimmer; putative YP_002750394.1 identified by match to protein family HMM PF00293 YP_002750395.1 identified by match to protein family HMM PF00892 YP_002750396.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002750398.1 identified by match to protein family HMM PF02639 YP_002750400.1 identified by glimmer; putative YP_002750401.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002750402.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002750405.1 phosphorylates nucleosides or dinucleosides to make UMP or CMP as part of the pyrimidine salvage pathway YP_002750406.1 identified by match to protein family HMM PF00149 YP_002750407.1 identified by match to protein family HMM PF01636 YP_002750409.1 identified by match to protein family HMM PF01925 YP_002750410.1 identified by match to protein family HMM PF00583 YP_002750411.1 identified by match to protein family HMM PF00324 YP_002750414.1 identified by match to protein family HMM PF00376; match to protein family HMM PF07739 YP_002750415.1 identified by match to protein family HMM PF08241 YP_002750416.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002750417.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00293 YP_002750418.1 identified by match to protein family HMM PF04989 YP_002750419.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002750420.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002750421.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_002750422.1 catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline YP_002750423.1 identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766 YP_002750424.1 identified by match to protein family HMM PF06166 YP_002750425.1 identified by match to protein family HMM PF06149 YP_002750426.1 identified by match to protein family HMM PF03746 YP_002750427.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_002750428.1 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370 YP_002750429.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339 YP_002750430.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002750431.1 identified by match to protein family HMM PF03932 YP_002750432.1 identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867 YP_002750433.1 identified by match to protein family HMM PF01022 YP_002750434.1 identified by glimmer; putative YP_002750435.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_002750436.1 identified by match to protein family HMM PF02698 YP_002750438.1 identified by match to protein family HMM PF00583 YP_002750439.1 identified by glimmer; putative YP_002750440.1 identified by match to protein family HMM PF07670 YP_002750441.1 identified by match to protein family HMM PF01636 YP_002750442.1 identified by match to protein family HMM PF00583 YP_002750443.1 identified by match to protein family HMM PF01061 YP_002750444.1 identified by match to protein family HMM PF00440 YP_002750445.1 identified by match to protein family HMM PF00391; match to protein family HMM PF01326 YP_002750447.1 identified by match to protein family HMM PF00753 YP_002750448.1 identified by match to protein family HMM PF09678 YP_002750450.1 identified by match to protein family HMM PF07875 YP_002750451.1 identified by match to protein family HMM PF08892 YP_002750452.1 identified by match to protein family HMM PF01810 YP_002750453.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845 YP_002750454.1 identified by glimmer; putative YP_002750455.1 identified by match to protein family HMM PF00269 YP_002750458.1 identified by match to protein family HMM PF00269 YP_002750459.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002750460.1 identified by match to protein family HMM PF05067 YP_002750461.1 identified by match to protein family HMM PF08863 YP_002750462.1 identified by match to protein family HMM PF00817 YP_002750463.1 identified by glimmer; putative YP_002750464.1 identified by match to protein family HMM PF00144 YP_002750465.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_002750466.1 identified by match to protein family HMM PF03992 YP_002750467.1 identified by match to protein family HMM PF08921 YP_002750468.1 identified by match to protein family HMM PF01544 YP_002750472.1 identified by glimmer; putative YP_002750473.1 identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655 YP_002750474.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002750475.1 identified by match to protein family HMM PF00440 YP_002750476.1 identified by match to protein family HMM PF00067 YP_002750477.1 identified by match to protein family HMM PF00440 YP_002750478.1 identified by match to protein family HMM PF07859 YP_002750479.1 identified by match to protein family HMM PF07859 YP_002750481.1 identified by match to protein family HMM PF03073 YP_002750482.1 identified by match to protein family HMM PF00875; match to protein family HMM PF03441 YP_002750483.1 identified by match to protein family HMM PF00484 YP_002750485.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_002750488.1 identified by match to protein family HMM PF01882 YP_002750489.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728 YP_002750490.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_002750491.1 identified by match to protein family HMM PF00561 YP_002750492.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002750493.1 identified by match to protein family HMM PF00005 YP_002750495.1 identified by match to protein family HMM PF02518 YP_002750496.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_002750497.1 identified by match to protein family HMM PF01297 YP_002750498.1 identified by match to protein family HMM PF00950 YP_002750499.1 identified by match to protein family HMM PF00005 YP_002750500.1 identified by match to protein family HMM PF01965 YP_002750501.1 identified by glimmer; putative YP_002750502.1 identified by match to protein family HMM PF00485 YP_002750503.1 catalyzes the reduction of arsenate to arsenite; also can dephosphorylate tyrosine phosphorylated proteins, aryl phosphates, and acyl phosphates YP_002750504.1 identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832 YP_002750505.1 identified by match to protein family HMM PF00903 YP_002750506.1 identified by match to protein family HMM PF01022 YP_002750507.1 identified by glimmer; putative YP_002750508.1 identified by match to protein family HMM PF00226; match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002750509.1 identified by match to protein family HMM PF00012 YP_002750510.1 identified by match to protein family HMM PF07690 YP_002750511.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002750513.1 identified by match to protein family HMM PF00903 YP_002750515.1 identified by match to protein family HMM PF00144 YP_002750517.1 identified by match to protein family HMM PF08803 YP_002750518.1 identified by match to protein family HMM PF07681 YP_002750519.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03965 YP_002750520.1 identified by match to protein family HMM PF00067; match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667 YP_002750521.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002750522.1 identified by glimmer; putative YP_002750526.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002750527.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002750528.1 identified by glimmer; putative YP_002750531.1 identified by glimmer; putative YP_002750532.1 catalyzes the formation of pyruvate from D-cysteine YP_002750533.1 identified by match to protein family HMM PF00149 YP_002750534.1 identified by match to protein family HMM PF00144 YP_002750536.1 identified by match to protein family HMM TIGR02304 YP_002750537.1 identified by match to protein family HMM PF00753 YP_002750538.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002750539.1 identified by match to protein family HMM PF02655 YP_002750540.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_002750543.1 identified by match to protein family HMM PF02073 YP_002750544.1 identified by match to protein family HMM PF02517 YP_002750545.1 identified by match to protein family HMM PF00376 YP_002750546.1 identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027 YP_002750547.1 identified by glimmer; putative YP_002750549.1 identified by glimmer; putative YP_002750550.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002750551.1 identified by match to protein family HMM PF02810 YP_002750552.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_002750553.1 identified by match to protein family HMM PF00005 YP_002750554.1 identified by match to protein family HMM PF02687 YP_002750555.1 identified by match to protein family HMM PF01022 YP_002750557.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002750558.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002750559.1 identified by match to protein family HMM PF02588 YP_002750560.1 identified by match to protein family HMM PF01047 YP_002750561.1 identified by match to protein family HMM PF00583 YP_002750562.1 identified by match to protein family HMM PF04299 YP_002750563.1 identified by match to protein family HMM PF02588 YP_002750564.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002750565.1 identified by match to protein family HMM PF02589 YP_002750566.1 identified by match to protein family HMM PF02589; match to protein family HMM TIGR00273 YP_002750567.1 identified by match to protein family HMM PF02754 YP_002750568.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002750571.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002750573.1 identified by glimmer; putative YP_002750574.1 identified by match to protein family HMM PF02016 YP_002750576.1 identified by glimmer; putative YP_002750577.1 identified by match to protein family HMM PF00581; match to protein family HMM PF00753 YP_002750578.1 identified by match to protein family HMM PF07992 YP_002750579.1 identified by glimmer; putative YP_002750580.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF07504 YP_002750581.1 identified by glimmer; putative YP_002750582.1 identified by match to protein family HMM PF04892 YP_002750583.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002750584.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002750585.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002750586.1 identified by match to protein family HMM PF00144; match to protein family HMM PF00395 YP_002750587.1 identified by glimmer; putative YP_002750588.1 identified by match to protein family HMM PF09346 YP_002750589.1 identified by match to protein family HMM PF01609 YP_002750590.1 identified by match to protein family HMM PF07859 YP_002750591.1 identified by glimmer; putative YP_002750592.1 identified by match to protein family HMM PF07690 YP_002750593.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002750594.1 identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR01484 YP_002750595.1 identified by match to protein family HMM PF01041; match to protein family HMM PF01212 YP_002750596.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002750597.1 identified by match to protein family HMM PF00515 YP_002750598.1 identified by glimmer; putative YP_002750599.1 identified by glimmer; putative YP_002750602.1 identified by glimmer; putative YP_002750603.1 identified by match to protein family HMM PF00817 YP_002750604.1 identified by match to protein family HMM PF08863 YP_002750605.1 identified by glimmer; putative YP_002750606.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02203; match to protein family HMM PF02743 YP_002750608.1 identified by match to protein family HMM PF01490; match to protein family HMM PF03222 YP_002750609.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718 YP_002750610.1 identified by match to protein family HMM PF03315; match to protein family HMM TIGR00719 YP_002750612.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde YP_002750613.1 identified by match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143 YP_002750614.1 identified by match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124 YP_002750615.1 identified by match to protein family HMM PF00857 YP_002750616.1 identified by match to protein family HMM PF01037; match to protein family HMM PF01047 YP_002750617.1 identified by match to protein family HMM PF00324; match to protein family HMM PF01490; match to protein family HMM PF03845 YP_002750618.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002750619.1 identified by glimmer; putative YP_002750620.1 identified by match to protein family HMM PF06245 YP_002750621.1 identified by match to protein family HMM PF00389; match to protein family HMM PF01842; match to protein family HMM PF02826 YP_002750622.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_002750623.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002750625.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in B. subtilis this protein is activated in response to cell wall antibiotics, ethanol, heat, acid, and superoxide stress YP_002750628.1 identified by match to protein family HMM PF07883 YP_002750629.1 identified by match to protein family HMM PF00165 YP_002750631.1 identified by match to protein family HMM PF09346 YP_002750633.1 identified by match to protein family HMM PF01804 YP_002750634.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_002750635.1 identified by match to protein family HMM PF00395; match to protein family HMM PF01510; match to protein family HMM PF08239 YP_002750637.1 identified by match to protein family HMM PF00440 YP_002750638.1 identified by match to protein family HMM PF07690 YP_002750640.1 identified by match to protein family HMM PF06352 YP_002750641.1 identified by glimmer; putative YP_002750642.1 identified by match to protein family HMM PF00395 YP_002750643.1 identified by match to protein family HMM PF00903 YP_002750646.1 identified by match to protein family HMM PF07690 YP_002750647.1 identified by match to protein family HMM PF00561 YP_002750648.1 identified by match to protein family HMM PF01047 YP_002750649.1 identified by match to protein family HMM PF07690 YP_002750650.1 identified by match to protein family HMM PF00144 YP_002750651.1 identified by glimmer; putative YP_002750653.1 identified by match to protein family HMM PF00005 YP_002750657.1 identified by match to protein family HMM PF00893 YP_002750658.1 identified by match to protein family HMM PF00440 YP_002750660.1 identified by match to protein family HMM PF01289 YP_002750661.1 identified by glimmer; putative YP_002750662.1 identified by match to protein family HMM PF02667 YP_002750663.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_002750664.1 identified by match to protein family HMM PF04434 YP_002750666.1 identified by glimmer; putative YP_002750669.1 identified by match to protein family HMM PF00005 YP_002750670.1 identified by match to protein family HMM PF02361 YP_002750672.1 identified by match to protein family HMM TIGR01167 YP_002750673.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_002750674.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03606 YP_002750675.1 identified by match to protein family HMM PF04231 YP_002750676.1 identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011 YP_002750677.1 identified by match to protein family HMM PF00144 YP_002750678.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002750679.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002750681.1 identified by glimmer; putative YP_002750682.1 identified by match to protein family HMM PF01638 YP_002750683.1 identified by match to protein family HMM PF00881 YP_002750685.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002750687.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002750689.1 identified by match to protein family HMM PF00005 YP_002750690.1 identified by glimmer; putative YP_002750691.1 identified by glimmer; putative YP_002750692.1 identified by match to protein family HMM PF01381 YP_002750694.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254 YP_002750695.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_002750696.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002750697.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00376 YP_002750698.1 identified by match to protein family HMM PF07853 YP_002750703.1 identified by match to protein family HMM PF00293 YP_002750704.1 identified by match to protein family HMM PF00903 YP_002750705.1 identified by match to protein family HMM PF00480 YP_002750706.1 identified by match to protein family HMM PF07690 YP_002750707.1 identified by match to protein family HMM PF00132 YP_002750708.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02687 YP_002750709.1 identified by match to protein family HMM PF00005 YP_002750710.1 identified by glimmer; putative YP_002750711.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002750713.1 identified by match to protein family HMM PF01594 YP_002750714.1 identified by match to protein family HMM PF04226 YP_002750715.1 identified by match to protein family HMM PF00583 YP_002750716.1 identified by glimmer; putative YP_002750717.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002750718.1 identified by match to protein family HMM PF07336 YP_002750719.1 identified by match to protein family HMM PF07690 YP_002750720.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002750722.1 identified by glimmer; putative YP_002750725.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_002750727.1 identified by match to protein family HMM PF00892 YP_002750728.1 identified by match to protein family HMM PF00805 YP_002750729.1 identified by match to protein family HMM PF06906 YP_002750731.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01314 YP_002750732.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791 YP_002750733.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_002750734.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_002750735.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002750736.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_002750739.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002750741.1 identified by match to protein family HMM PF03928 YP_002750743.1 identified by match to protein family HMM PF01490; match to protein family HMM PF03222 YP_002750745.1 identified by glimmer; putative YP_002750746.1 identified by match to protein family HMM PF02082 YP_002750747.1 identified by glimmer; putative YP_002750748.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress YP_002750749.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01638 YP_002750750.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002750751.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002750753.1 identified by match to protein family HMM PF00657 YP_002750754.1 identified by match to protein family HMM PF00753 YP_002750757.1 identified by glimmer; putative YP_002750758.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_002750759.1 identified by match to protein family HMM PF00583 YP_002750760.1 identified by match to protein family HMM PF00106 YP_002750761.1 identified by match to protein family HMM PF00583 YP_002750762.1 identified by match to protein family HMM PF00583 YP_002750763.1 identified by match to protein family HMM PF00501 YP_002750764.1 identified by match to protein family HMM PF02525 YP_002750765.1 identified by match to protein family HMM PF01638 YP_002750767.1 identified by match to protein family HMM PF00023 YP_002750768.1 identified by match to protein family HMM PF01022 YP_002750769.1 identified by match to protein family HMM PF00535; match to protein family HMM PF00704; match to protein family HMM PF01522 YP_002750771.1 Heat shock-induced YP_002750772.1 identified by glimmer; putative YP_002750773.1 identified by match to protein family HMM PF02517 YP_002750774.1 identified by match to protein family HMM PF00440 YP_002750775.1 identified by glimmer; putative YP_002750776.1 identified by match to protein family HMM PF06445 YP_002750777.1 identified by match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002750778.1 identified by match to protein family HMM PF05656 YP_002750783.1 identified by match to protein family HMM PF06013 YP_002750784.1 identified by match to protein family HMM PF01061 YP_002750785.1 identified by match to protein family HMM PF00005 YP_002750786.1 identified by match to protein family HMM PF06304 YP_002750787.1 identified by match to protein family HMM PF03551 YP_002750788.1 identified by glimmer; putative YP_002750789.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_002750790.1 identified by glimmer; putative YP_002750791.1 identified by match to protein family HMM PF00753 YP_002750792.1 identified by match to protein family HMM PF01183 YP_002750793.1 identified by match to protein family HMM PF03819 YP_002750796.1 identified by glimmer; putative YP_002750798.1 identified by glimmer; putative YP_002750799.1 identified by match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002750801.1 identified by match to protein family HMM PF00027 YP_002750802.1 identified by match to protein family HMM PF04657 YP_002750803.1 identified by match to protein family HMM PF04657 YP_002750804.1 identified by glimmer; putative YP_002750805.1 identified by match to protein family HMM PF00753 YP_002750807.1 identified by match to protein family HMM PF08006 YP_002750808.1 identified by match to protein family HMM PF03551 YP_002750809.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02817 YP_002750810.1 identified by match to protein family HMM PF00324 YP_002750811.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_002750814.1 identified by glimmer; putative YP_002750815.1 identified by match to protein family HMM PF00106 YP_002750816.1 identified by match to protein family HMM PF02585 YP_002750817.1 identified by match to protein family HMM PF08830 YP_002750818.1 identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600 YP_002750819.1 identified by glimmer; putative YP_002750820.1 identified by match to protein family HMM PF00583 YP_002750821.1 identified by match to protein family HMM PF01497 YP_002750822.1 identified by match to protein family HMM PF01032 YP_002750823.1 identified by match to protein family HMM PF01032 YP_002750824.1 identified by match to protein family HMM PF05675 YP_002750825.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_002750828.1 identified by match to protein family HMM PF05163 YP_002750829.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002750830.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002750831.1 identified by match to protein family HMM PF00300 YP_002750832.1 identified by match to protein family HMM PF00583 YP_002750833.1 identified by match to protein family HMM PF00488 YP_002750835.1 identified by glimmer; putative YP_002750837.1 converts 1,4-alpha-D-glucans to maltodextrin YP_002750838.1 identified by match to protein family HMM PF00797 YP_002750839.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181 YP_002750840.1 identified by match to protein family HMM PF00144 YP_002750842.1 identified by match to protein family HMM PF07690 YP_002750843.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002750844.1 identified by glimmer; putative YP_002750845.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF02698 YP_002750846.1 identified by match to protein family HMM PF03009 YP_002750847.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002750850.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_002750851.1 identified by glimmer; putative YP_002750852.1 identified by match to protein family HMM PF01022 YP_002750853.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002750854.1 identified by match to protein family HMM PF02696 YP_002750855.1 identified by match to protein family HMM PF00515 YP_002750856.1 identified by glimmer; putative YP_002750857.1 identified by match to protein family HMM PF04299 YP_002750858.1 identified by match to protein family HMM PF04229 YP_002750860.1 identified by match to protein family HMM PF01758 YP_002750861.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_002750863.1 identified by match to protein family HMM PF00534 YP_002750864.1 identified by match to protein family HMM TIGR01444 YP_002750865.1 identified by match to protein family HMM PF00132 YP_002750866.1 identified by match to protein family HMM PF01041 YP_002750867.1 identified by match to protein family HMM PF00535; match to protein family HMM PF08241 YP_002750868.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002750869.1 identified by match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453 YP_002750870.1 identified by match to protein family HMM PF02308 YP_002750871.1 identified by match to protein family HMM PF00583 YP_002750873.1 identified by match to protein family HMM PF00903 YP_002750874.1 identified by match to protein family HMM PF04294 YP_002750877.1 identified by glimmer; putative YP_002750879.1 has 3'-5' exonuclease activity YP_002750880.1 identified by match to protein family HMM PF00313 YP_002750882.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_002750884.1 identified by match to protein family HMM PF00293 YP_002750885.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF04266 YP_002750886.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002750889.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002750890.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002750891.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002750894.1 identified by glimmer; putative YP_002750895.1 identified by match to protein family HMM PF01551 YP_002750897.1 identified by glimmer; putative YP_002750898.1 identified by match to protein family HMM PF01183 YP_002750901.1 identified by match to protein family HMM TIGR01446 YP_002750903.1 identified by match to protein family HMM PF01381 YP_002750904.1 identified by match to protein family HMM PF06114 YP_002750905.1 identified by glimmer; putative YP_002750906.1 identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451 YP_002750907.1 identified by match to protein family HMM PF00106 YP_002750908.1 identified by match to protein family HMM PF00583 YP_002750909.1 catalyzes the formation of arginine and fumarate from arginosuccinate YP_002750910.1 identified by glimmer; putative YP_002750911.1 identified by match to protein family HMM PF01156 YP_002750912.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase YP_002750913.1 identified by match to protein family HMM PF06196 YP_002750914.1 identified by match to protein family HMM PF00171 YP_002750915.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002750917.1 identified by match to protein family HMM PF00432; match to protein family HMM TIGR01787 YP_002750918.1 identified by match to protein family HMM PF02681 YP_002750919.1 identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688 YP_002750920.1 identified by match to protein family HMM PF06961 YP_002750921.1 identified by glimmer; putative YP_002750923.1 identified by match to protein family HMM PF01883 YP_002750924.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682 YP_002750925.1 identified by match to protein family HMM PF02391 YP_002750926.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_002750927.1 catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways YP_002750928.1 identified by match to protein family HMM PF01226 YP_002750929.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666 YP_002750930.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth YP_002750932.1 identified by match to protein family HMM PF07849 YP_002750933.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_002750934.1 identified by match to protein family HMM PF03323 YP_002750935.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002750936.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002750937.1 identified by glimmer; putative YP_002750938.1 identified by glimmer; putative YP_002750939.1 identified by glimmer; putative YP_002750940.1 identified by glimmer; putative YP_002750942.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002750943.1 identified by match to protein family HMM PF00496 YP_002750944.1 identified by match to protein family HMM PF00496 YP_002750945.1 identified by match to protein family HMM PF00496 YP_002750946.1 involved in the transport of C4-dicarboxylates across the membrane YP_002750947.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002750948.1 identified by glimmer; putative YP_002750949.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002750950.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002750952.1 identified by match to protein family HMM PF00005 YP_002750953.1 identified by match to protein family HMM PF00440 YP_002750954.1 identified by match to protein family HMM PF01118; match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447 YP_002750955.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766 YP_002750956.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002750957.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002750958.1 identified by match to protein family HMM PF02629 YP_002750959.1 identified by match to protein family HMM PF00089 YP_002750960.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002750961.1 identified by match to protein family HMM TIGR02491 YP_002750962.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002750963.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_002750964.1 identified by match to protein family HMM PF01521 YP_002750965.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_002750966.1 identified by match to protein family HMM PF00704; match to protein family HMM PF01476 YP_002750967.1 identified by match to protein family HMM TIGR03090 YP_002750968.1 SASP N; found in forespore compartment YP_002750970.1 3'-5' exonuclease of DNA polymerase III YP_002750971.1 identified by glimmer; putative YP_002750972.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002750973.1 identified by glimmer; putative YP_002750974.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002750975.1 Catalyzes the conversion of citrate to isocitrate YP_002750976.1 SASP O; found in forespore compartment YP_002750977.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764 YP_002750979.1 SASP P; found in forespore compartment YP_002750981.1 identified by match to protein family HMM PF07690 YP_002750983.1 identified by match to protein family HMM PF02272; match to protein family HMM PF07973 YP_002750984.1 identified by match to protein family HMM PF00293 YP_002750985.1 identified by glimmer; putative YP_002750986.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002750987.1 activates fatty acids by binding to coenzyme A YP_002750988.1 identified by match to protein family HMM PF02632 YP_002750989.1 identified by match to protein family HMM PF00501 YP_002750993.1 identified by glimmer; putative YP_002750994.1 identified by match to protein family HMM PF05532 YP_002750995.1 identified by match to protein family HMM PF00395 YP_002750996.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_002750998.1 identified by match to protein family HMM PF01510 YP_002750999.1 identified by glimmer; putative YP_002751000.1 identified by match to protein family HMM PF02588 YP_002751001.1 identified by match to protein family HMM PF00903 YP_002751002.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_002751003.1 identified by match to protein family HMM PF02230 YP_002751004.1 identified by match to protein family HMM PF00903 YP_002751005.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121 YP_002751006.1 identified by match to protein family HMM PF01645 YP_002751007.1 identified by match to protein family HMM PF00724 YP_002751008.1 identified by match to protein family HMM PF02559 YP_002751009.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate YP_002751010.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_002751011.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_002751012.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_002751013.1 regulates expression of hut operon by antitermination mechanism; forms a homohexamer; binds both magnesium and L-histidine and then binds RNA sequences within the terminator region and destabilizes the terminator structure YP_002751014.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002751015.1 identified by match to protein family HMM PF01965 YP_002751017.1 identified by glimmer; putative YP_002751020.1 identified by glimmer; putative YP_002751021.1 identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451 YP_002751022.1 identified by match to protein family HMM PF07301 YP_002751023.1 identified by match to protein family HMM PF02683 YP_002751024.1 identified by match to protein family HMM PF00892 YP_002751025.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002751027.1 identified by match to protein family HMM PF00005 YP_002751029.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002751030.1 increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation; inhibited by the antiholin-like proteins lrgAB YP_002751031.1 identified by match to protein family HMM PF04172 YP_002751032.1 identified by match to protein family HMM PF00293 YP_002751033.1 identified by glimmer; putative YP_002751034.1 identified by match to protein family HMM PF01925 YP_002751035.1 identified by glimmer; putative YP_002751036.1 identified by match to protein family HMM PF00395; match to protein family HMM PF01510 YP_002751037.1 identified by glimmer; putative YP_002751039.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002751040.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002751041.1 identified by match to protein family HMM PF03672 YP_002751043.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002751044.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097 YP_002751045.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097 YP_002751046.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02315 YP_002751047.1 identified by match to protein family HMM TIGR01098 YP_002751048.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_002751049.1 identified by match to protein family HMM PF05979 YP_002751050.1 identified by match to protein family HMM PF00239 YP_002751051.1 Represses a number of genes involved in the response to DNA damage YP_002751053.1 identified by match to protein family HMM PF08006 YP_002751054.1 identified by match to protein family HMM PF03551 YP_002751055.1 identified by glimmer; putative YP_002751056.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_002751057.1 identified by match to protein family HMM PF00376 YP_002751058.1 identified by match to protein family HMM PF01053; match to protein family HMM PF06838 YP_002751059.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR03156 YP_002751060.1 identified by match to protein family HMM PF03458 YP_002751062.1 identified by match to protein family HMM PF00004; match to protein family HMM TIGR02881 YP_002751063.1 identified by match to protein family HMM PF02899 YP_002751064.1 identified by match to protein family HMM PF01391 YP_002751065.1 Stimulates the elongation of poly(A) tails YP_002751066.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_002751067.1 identified by glimmer; putative YP_002751068.1 identified by match to protein family HMM PF06347; match to protein family HMM PF06725; match to protein family HMM PF08239 YP_002751069.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427 YP_002751070.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_002751071.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220 YP_002751072.1 identified by match to protein family HMM PF00465 YP_002751073.1 identified by match to protein family HMM PF04238 YP_002751075.1 identified by glimmer; putative YP_002751076.1 identified by match to protein family HMM PF00324 YP_002751077.1 identified by match to protein family HMM PF00704 YP_002751078.1 identified by glimmer; putative YP_002751079.1 identified by match to protein family HMM PF00149 YP_002751080.1 identified by match to protein family HMM PF01226; match to protein family HMM TIGR00790 YP_002751081.1 identified by match to protein family HMM PF00216 YP_002751082.1 identified by match to protein family HMM PF00583 YP_002751085.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_002751086.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00403; match to protein family HMM TIGR00003 YP_002751087.1 identified by match to protein family HMM PF02583 YP_002751089.1 identified by match to protein family HMM PF00756 YP_002751090.1 identified by match to protein family HMM PF00005 YP_002751091.1 identified by match to protein family HMM PF01032 YP_002751092.1 identified by match to protein family HMM PF01032 YP_002751093.1 identified by match to protein family HMM PF01497 YP_002751095.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633 YP_002751096.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02805 YP_002751097.1 identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589 YP_002751098.1 identified by match to protein family HMM PF00730; match to protein family HMM PF07934 YP_002751099.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_002751100.1 identified by match to protein family HMM PF02588 YP_002751101.1 identified by glimmer; putative YP_002751102.1 identified by glimmer; putative YP_002751103.1 identified by match to protein family HMM PF00300 YP_002751104.1 identified by match to protein family HMM PF00561 YP_002751106.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002751107.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002751108.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370 YP_002751109.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993 YP_002751112.1 identified by match to protein family HMM PF08282; match to protein family HMM TIGR01484 YP_002751113.1 identified by match to protein family HMM PF00027 YP_002751115.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002751116.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002751118.1 identified by match to protein family HMM PF00388 YP_002751119.1 identified by glimmer; putative YP_002751120.1 identified by match to protein family HMM PF00082; match to protein family HMM PF04151 YP_002751121.1 identified by match to protein family HMM PF01476; match to protein family HMM PF07486 YP_002751122.1 identified by match to protein family HMM PF01266 YP_002751123.1 identified by match to protein family HMM PF00884 YP_002751126.1 identified by match to protein family HMM PF02275 YP_002751127.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_002751128.1 This protein performs the mismatch recognition step during the DNA repair process YP_002751131.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_002751132.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_002751133.1 identified by match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02780 YP_002751134.1 identified by match to protein family HMM PF01244 YP_002751135.1 identified by match to protein family HMM PF04232 YP_002751136.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282 YP_002751137.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_002751138.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs YP_002751139.1 identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00177; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200 YP_002751140.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_002751144.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002751145.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_002751146.1 identified by match to protein family HMM PF05193 YP_002751147.1 identified by match to protein family HMM PF02653 YP_002751148.1 identified by match to protein family HMM PF02653 YP_002751149.1 identified by match to protein family HMM PF00005 YP_002751150.1 identified by match to protein family HMM PF02608 YP_002751151.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002751152.1 identified by match to protein family HMM PF01580; match to protein family HMM PF09397 YP_002751154.1 identified by match to protein family HMM PF00574 YP_002751155.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_002751156.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_002751157.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive YP_002751158.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_002751159.1 involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme YP_002751160.1 catalyzes the synthesis of dipicolinic acid from dihydroxydipicolinic acid; plays a role in spore heat resistance YP_002751161.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888 YP_002751162.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_002751163.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02873 YP_002751164.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM TIGR03591 YP_002751165.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_002751166.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_002751167.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_002751168.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_002751169.1 identified by match to protein family HMM PF04456 YP_002751170.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_002751171.1 identified by match to protein family HMM PF01248 YP_002751172.1 identified by match to protein family HMM PF04296 YP_002751173.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_002751174.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_002751175.1 identified by match to protein family HMM PF07733 YP_002751176.1 identified by match to protein family HMM PF00078; match to protein family HMM PF01844 YP_002751177.1 identified by match to protein family HMM PF00929; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00573 YP_002751178.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002751179.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_002751180.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_002751181.1 identified by match to protein family HMM PF01148 YP_002751182.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_002751183.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_002751184.1 Catalyzes the phosphorylation of UMP to UDP YP_002751185.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_002751186.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002751187.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_002751188.1 heat shock protein involved in degradation of misfolded proteins YP_002751189.1 heat shock protein involved in degradation of misfolded proteins YP_002751190.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_002751191.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_002751192.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_002751193.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_002751194.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_002751195.1 catalyzes the interconversion of succinyl-CoA and succinate YP_002751196.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_002751197.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_002751198.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002751199.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_002751200.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_002751201.1 Essential for efficient processing of 16S rRNA YP_002751203.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_002751204.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_002751205.1 identified by match to protein family HMM PF04297; match to protein family HMM PF08281 YP_002751206.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_002751207.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168 YP_002751208.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_002751209.1 carries the fatty acid chain in fatty acid biosynthesis YP_002751210.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002751211.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_002751212.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_002751213.1 negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria YP_002751214.1 catalyzes branch migration in Holliday junction intermediates YP_002751215.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599 YP_002751216.1 identified by match to protein family HMM PF03780 YP_002751217.1 required for 70S ribosome assembly YP_002751218.1 identified by match to protein family HMM PF04263; match to protein family HMM PF04265; match to protein family HMM TIGR01378 YP_002751219.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_002751220.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_002751221.1 identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714 YP_002751222.1 identified by match to protein family HMM PF00481 YP_002751223.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_002751224.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_002751225.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_002751226.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002751227.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_002751228.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_002751229.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_002751230.1 Essential for recycling GMP and indirectly, cGMP YP_002751231.1 identified by match to protein family HMM PF04025 YP_002751232.1 identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255 YP_002751233.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002751234.1 identified by match to protein family HMM PF05670; match to protein family HMM PF05833 YP_002751235.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002751241.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002751242.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002751243.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_002751244.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits YP_002751245.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+) YP_002751246.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_002751247.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_002751248.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_002751249.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_002751250.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_002751251.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_002751252.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_002751253.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_002751255.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_002751256.1 identified by match to protein family HMM PF05103; match to protein family HMM TIGR03544 YP_002751257.1 identified by match to protein family HMM PF01479 YP_002751258.1 identified by match to protein family HMM PF02325 YP_002751259.1 identified by match to protein family HMM PF04472 YP_002751260.1 identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044 YP_002751261.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_002751262.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888 YP_002751263.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin YP_002751264.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation YP_002751265.1 identified by match to protein family HMM PF03419; match to protein family HMM TIGR02854 YP_002751266.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_002751267.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_002751268.1 identified by match to protein family HMM PF03799; match to protein family HMM PF08478 YP_002751269.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_002751270.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002751271.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615 YP_002751272.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_002751273.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_002751274.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_002751275.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214 YP_002751276.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793 YP_002751277.1 identified by match to protein family HMM PF04977; match to protein family HMM TIGR02209 YP_002751278.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_002751280.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis YP_002751281.1 identified by match to protein family HMM PF00583 YP_002751282.1 identified by match to protein family HMM PF00249; match to protein family HMM TIGR02894 YP_002751283.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_002751284.1 identified by match to protein family HMM PF02620 YP_002751285.1 identified by match to protein family HMM PF05636 YP_002751286.1 identified by match to protein family HMM PF05362 YP_002751287.1 identified by match to protein family HMM PF01734 YP_002751288.1 identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871 YP_002751289.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_002751290.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_002751293.1 identified by match to protein family HMM PF07050 YP_002751294.1 identified by match to protein family HMM PF00300 YP_002751297.1 identified by match to protein family HMM PF00188 YP_002751298.1 identified by match to protein family HMM PF08868 YP_002751299.1 formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate YP_002751300.1 identified by match to protein family HMM PF09678; match to protein family HMM TIGR02737 YP_002751301.1 identified by match to protein family HMM PF03626; match to protein family HMM TIGR02908 YP_002751302.1 identified by match to protein family HMM PF00510 YP_002751303.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891 YP_002751304.1 identified by match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF02790; match to protein family HMM TIGR02866 YP_002751305.1 converts protoheme IX and farnesyl diphosphate to heme O YP_002751306.1 identified by match to protein family HMM PF02628 YP_002751307.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_002751308.1 identified by match to protein family HMM PF01098 YP_002751309.1 depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; putative ligand binding protein YP_002751311.1 identified by match to protein family HMM PF02562 YP_002751312.1 identified by match to protein family HMM PF01243 YP_002751314.1 identified by glimmer; putative YP_002751316.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_002751317.1 identified by glimmer; putative YP_002751318.1 identified by match to protein family HMM PF00459 YP_002751320.1 identified by match to protein family HMM PF06335 YP_002751321.1 identified by match to protein family HMM PF05256 YP_002751322.1 identified by match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711 YP_002751323.1 involved in assembly of spore coat proteins such as GerQ by catalyzing epsilon-(gamma-glutamyl)lysine cross links YP_002751324.1 identified by glimmer; putative YP_002751326.1 identified by glimmer; putative YP_002751328.1 identified by glimmer; putative YP_002751329.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_002751330.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_002751331.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002751332.1 identified by match to protein family HMM PF00676; match to protein family HMM TIGR03181 YP_002751333.1 identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732 YP_002751334.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002751335.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002751336.1 identified by match to protein family HMM PF07288 YP_002751337.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_002751338.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254 YP_002751340.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002751341.1 identified by match to protein family HMM PF00132; match to protein family HMM PF08503; match to protein family HMM TIGR03532 YP_002751342.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002751343.1 identified by match to protein family HMM PF00571 YP_002751345.1 identified by match to protein family HMM PF04308 YP_002751346.1 identified by glimmer; putative YP_002751347.1 identified by match to protein family HMM PF08796 YP_002751348.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196 YP_002751349.1 identified by glimmer; putative YP_002751350.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002751351.1 identified by match to protein family HMM PF00563 YP_002751352.1 identified by match to protein family HMM PF00106 YP_002751353.1 identified by match to protein family HMM PF00149 YP_002751354.1 identified by glimmer; putative YP_002751355.1 identified by glimmer; putative YP_002751356.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_002751357.1 identified by match to protein family HMM PF02541 YP_002751360.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002751362.1 identified by glimmer; putative YP_002751363.1 identified by glimmer; putative YP_002751364.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002751365.1 identified by match to protein family HMM PF03551 YP_002751366.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_002751370.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002751371.1 identified by glimmer; putative YP_002751372.1 identified by match to protein family HMM PF00155 YP_002751373.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002751374.1 identified by glimmer; putative YP_002751375.1 identified by match to protein family HMM PF00528 YP_002751376.1 identified by match to protein family HMM PF00528 YP_002751377.1 identified by match to protein family HMM PF01547 YP_002751378.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02903 YP_002751379.1 identified by match to protein family HMM PF00128 YP_002751380.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402 YP_002751381.1 identified by match to protein family HMM PF00106 YP_002751382.1 identified by match to protein family HMM PF06271 YP_002751387.1 identified by match to protein family HMM PF02463 YP_002751388.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_002751389.1 identified by match to protein family HMM PF00293 YP_002751390.1 identified by glimmer; putative YP_002751391.1 identified by glimmer; putative YP_002751394.1 identified by match to protein family HMM PF03551 YP_002751395.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_002751397.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway YP_002751398.1 phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway YP_002751399.1 identified by match to protein family HMM PF00795 YP_002751400.1 produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however YP_002751401.1 converts 2,3-diketo-5-methylthiopentyl-1-phosphate into 2-hydroxy 3-keto-5-methylthiopentenyl-1-phosphate; involved in methionine salvage YP_002751402.1 converts 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate to 1,2-dihydroxy-3-keto-5-methylthiopentene; involved in methionine salvage YP_002751403.1 converts methylthioribulose-1-phosphate into 2,3-diketo-5-methylthiopentyl-1-phosphate; involved in methionine salvage YP_002751404.1 identified by match to protein family HMM PF03079; match to protein family HMM PF07883 YP_002751405.1 identified by glimmer; putative YP_002751406.1 identified by glimmer; putative YP_002751407.1 identified by match to protein family HMM PF03446 YP_002751408.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002751409.1 identified by match to protein family HMM PF00881 YP_002751410.1 identified by glimmer; putative YP_002751411.1 identified by glimmer; putative YP_002751412.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_002751413.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_002751414.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002 YP_002751415.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_002751416.1 identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002751417.1 identified by match to protein family HMM PF07702 YP_002751418.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate YP_002751419.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00221 YP_002751420.1 identified by match to protein family HMM PF00753 YP_002751421.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer YP_002751422.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB YP_002751423.1 identified by match to protein family HMM PF03745 YP_002751424.1 identified by match to protein family HMM PF00583 YP_002751425.1 identified by match to protein family HMM PF00160 YP_002751426.1 identified by match to protein family HMM PF06207 YP_002751427.1 identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002751428.1 identified by match to protein family HMM PF03323 YP_002751430.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839 YP_002751431.1 identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845 YP_002751432.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838 YP_002751435.1 identified by glimmer; putative YP_002751436.1 identified by match to protein family HMM PF00209 YP_002751437.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore. YP_002751438.1 binds to sigma F preventing its association with RNA polymerase during sporulation YP_002751439.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886 YP_002751440.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943 YP_002751441.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02082 YP_002751442.1 identified by match to protein family HMM PF00005 YP_002751444.1 identified by glimmer; putative YP_002751445.1 identified by match to protein family HMM PF01047 YP_002751446.1 identified by match to protein family HMM PF04402 YP_002751447.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_002751448.1 identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383 YP_002751449.1 Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway YP_002751450.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_002751451.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_002751453.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_002751455.1 identified by match to protein family HMM PF01475 YP_002751456.1 identified by match to protein family HMM PF01944; match to protein family HMM TIGR02831 YP_002751457.1 identified by match to protein family HMM PF00583 YP_002751458.1 identified by match to protein family HMM PF00293 YP_002751460.1 identified by match to protein family HMM PF00248 YP_002751461.1 identified by match to protein family HMM PF00248 YP_002751462.1 identified by match to protein family HMM PF04229 YP_002751464.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_002751466.1 identified by match to protein family HMM PF00561 YP_002751467.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM PF06808 YP_002751468.1 identified by match to protein family HMM PF00356 YP_002751469.1 identified by match to protein family HMM PF00583 YP_002751472.1 identified by match to protein family HMM PF09360 YP_002751473.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_002751474.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002751475.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate YP_002751476.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_002751478.1 catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine YP_002751479.1 identified by match to protein family HMM PF05401; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR02072 YP_002751480.1 identified by match to protein family HMM PF00561 YP_002751481.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine YP_002751482.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_002751483.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_002751484.1 identified by glimmer; putative YP_002751485.1 identified by glimmer; putative YP_002751486.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM TIGR00931 YP_002751487.1 in Escherichia coli this is a periplasmic enzyme while in gram positive organisms it may be anchored at the cell surface; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate YP_002751488.1 identified by match to protein family HMM PF00657 YP_002751489.1 identified by match to protein family HMM PF01047 YP_002751491.1 identified by glimmer; putative YP_002751492.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_002751493.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707 YP_002751494.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_002751495.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_002751496.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_002751497.1 identified by glimmer; putative YP_002751498.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002751499.1 identified by match to protein family HMM PF00753 YP_002751500.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_002751501.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718 YP_002751502.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719 YP_002751503.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002751504.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_002751505.1 identified by glimmer; putative YP_002751506.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_002751507.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01883 YP_002751508.1 identified by match to protein family HMM PF00583 YP_002751509.1 identified by glimmer; putative YP_002751510.1 identified by match to protein family HMM PF03734 YP_002751511.1 identified by match to protein family HMM PF06081 YP_002751512.1 identified by match to protein family HMM PF00005 YP_002751513.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002751514.1 identified by match to protein family HMM PF00497; match to protein family HMM PF04069 YP_002751515.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002751516.1 identified by match to protein family HMM PF06491 YP_002751518.1 identified by match to protein family HMM PF00293 YP_002751519.1 identified by match to protein family HMM PF01098 YP_002751520.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_002751521.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002751522.1 identified by match to protein family HMM PF00676 YP_002751523.1 E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_002751524.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_002751525.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812 YP_002751526.1 catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate YP_002751527.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_002751529.1 identified by match to protein family HMM PF03009 YP_002751532.1 identified by match to protein family HMM PF00072; match to protein family HMM PF08769; match to protein family HMM TIGR02875 YP_002751533.1 identified by match to protein family HMM PF00595; match to protein family HMM PF05580; match to protein family HMM TIGR02860 YP_002751534.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634 YP_002751535.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_002751536.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_002751537.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_002751538.1 identified by match to protein family HMM PF00348 YP_002751539.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_002751540.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_002751541.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_002751542.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_002751543.1 identified by match to protein family HMM PF03780 YP_002751544.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002751545.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002751547.1 identified by match to protein family HMM TIGR02830 YP_002751548.1 identified by match to protein family HMM PF09581; match to protein family HMM TIGR02896 YP_002751549.1 identified by match to protein family HMM PF09546; match to protein family HMM TIGR02829 YP_002751550.1 identified by match to protein family HMM PF09555; match to protein family HMM TIGR02849 YP_002751551.1 identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848 YP_002751552.1 necessary for complete engulfment of forespore YP_002751553.1 identified by match to protein family HMM TIGR02858 YP_002751556.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_002751557.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002751558.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_002751560.1 identified by match to protein family HMM PF07136 YP_002751562.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509 YP_002751563.1 involved in manganese homeostasis; activates the transcription of the mntABCD operon YP_002751564.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00620 YP_002751565.1 identified by match to protein family HMM PF03551 YP_002751567.1 identified by glimmer; putative YP_002751568.1 identified by glimmer; putative YP_002751569.1 identified by match to protein family HMM PF03099 YP_002751570.1 identified by match to protein family HMM PF00581 YP_002751571.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002751572.1 identified by match to protein family HMM PF00440 YP_002751573.1 identified by match to protein family HMM PF00893 YP_002751574.1 identified by match to protein family HMM PF00893 YP_002751575.1 identified by glimmer; putative YP_002751576.1 identified by glimmer; putative YP_002751581.1 identified by match to protein family HMM PF00005 YP_002751582.1 identified by match to protein family HMM PF00392 YP_002751585.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_002751586.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_002751587.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_002751588.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_002751590.1 identified by glimmer; putative YP_002751591.1 identified by glimmer; putative YP_002751595.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_002751596.1 identified by glimmer; putative YP_002751597.1 identified by match to protein family HMM PF03171 YP_002751600.1 identified by glimmer; putative YP_002751601.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002751602.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002751603.1 identified by match to protein family HMM PF00482 YP_002751604.1 identified by match to protein family HMM PF00437 YP_002751607.1 identified by match to protein family HMM PF00375 YP_002751608.1 identified by glimmer; putative YP_002751610.1 identified by glimmer; putative YP_002751611.1 identified by glimmer; putative YP_002751612.1 identified by glimmer; putative YP_002751613.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002751614.1 identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082 YP_002751615.1 catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions YP_002751616.1 catalyzes the formation of cysteine from cystathionine; in B. subtilis also has O-acetylhomoserine thiolyase activity YP_002751617.1 catalyzes the formation of L-homocysteine from cystathionine YP_002751619.1 identified by match to protein family HMM PF01022 YP_002751620.1 identified by match to protein family HMM PF02636 YP_002751621.1 identified by match to protein family HMM PF00753 YP_002751623.1 identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744 YP_002751624.1 identified by match to protein family HMM PF06014 YP_002751625.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_002751626.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_002751627.1 identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM PF02878 YP_002751628.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_002751629.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002751630.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_002751631.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_002751632.1 identified by match to protein family HMM TIGR02136 YP_002751633.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002751634.1 identified by match to protein family HMM PF07690 YP_002751635.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_002751636.1 identified by match to protein family HMM PF06691 YP_002751638.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_002751639.1 identified by match to protein family HMM PF01475 YP_002751640.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032 YP_002751641.1 identified by match to protein family HMM PF00005 YP_002751642.1 identified by match to protein family HMM PF02588 YP_002751644.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues YP_002751645.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002751647.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_002751648.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_002751649.1 identified by match to protein family HMM PF04816 YP_002751650.1 identified by match to protein family HMM PF00034 YP_002751651.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium YP_002751652.1 synthesizes RNA primers at the replication forks YP_002751653.1 identified by glimmer; putative YP_002751654.1 identified by glimmer; putative YP_002751655.1 identified by match to protein family HMM PF03618 YP_002751656.1 identified by match to protein family HMM PF00571; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002751657.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_002751659.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_002751660.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_002751661.1 identified by match to protein family HMM PF01219 YP_002751662.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_002751663.1 identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277 YP_002751664.1 identified by match to protein family HMM PF02562 YP_002751665.1 identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876 YP_002751666.1 identified by match to protein family HMM PF07241; match to protein family HMM TIGR02856 YP_002751667.1 identified by match to protein family HMM PF09424 YP_002751668.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_002751669.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 YP_002751670.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_002751671.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_002751672.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_002751673.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002751674.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_002751675.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_002751676.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002751677.1 identified by match to protein family HMM PF01638 YP_002751678.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002751680.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination YP_002751681.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_002751682.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_002751684.1 identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 YP_002751685.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR02571 YP_002751686.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426 YP_002751687.1 may be involved in regulation of competence genes YP_002751688.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002751689.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_002751690.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488 YP_002751691.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_002751692.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253 YP_002751693.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_002751694.1 in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis YP_002751695.1 identified by match to protein family HMM PF09419; match to protein family HMM TIGR01662; match to protein family HMM TIGR01668 YP_002751696.1 identified by match to protein family HMM PF08970 YP_002751697.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine YP_002751698.1 sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment YP_002751700.1 identified by match to protein family HMM PF03413 YP_002751701.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_002751702.1 identified by match to protein family HMM PF00881 YP_002751703.1 identified by glimmer; putative YP_002751704.1 identified by match to protein family HMM PF04607 YP_002751706.1 identified by match to protein family HMM PF00245 YP_002751708.1 identified by match to protein family HMM PF00583 YP_002751709.1 identified by match to protein family HMM PF00561 YP_002751710.1 identified by match to protein family HMM PF04173; match to protein family HMM PF07681 YP_002751712.1 identified by match to protein family HMM PF00300 YP_002751713.1 identified by glimmer; putative YP_002751714.1 identified by glimmer; putative YP_002751715.1 identified by match to protein family HMM PF07676 YP_002751716.1 identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF05922 YP_002751718.1 phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_002751719.1 identified by match to protein family HMM PF01329 YP_002751720.1 identified by match to protein family HMM PF00903 YP_002751721.1 identified by match to protein family HMM PF07681 YP_002751722.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002751723.1 identified by match to protein family HMM PF01575 YP_002751724.1 identified by match to protein family HMM PF00583 YP_002751725.1 identified by match to protein family HMM PF00583 YP_002751727.1 identified by match to protein family HMM PF00005 YP_002751728.1 identified by match to protein family HMM PF01032 YP_002751729.1 identified by match to protein family HMM PF01497 YP_002751731.1 identified by match to protein family HMM PF00465 YP_002751732.1 catalyzes the formation of L-homocysteine from cystathionine YP_002751733.1 identified by match to protein family HMM PF00291 YP_002751734.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_002751735.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002751736.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002751737.1 identified by match to protein family HMM PF07423 YP_002751738.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002751739.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002751740.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_002751741.1 identified by match to protein family HMM PF01136 YP_002751742.1 identified by match to protein family HMM PF01136 YP_002751743.1 identified by match to protein family HMM PF01596; match to protein family HMM PF02390 YP_002751744.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_002751745.1 identified by match to protein family HMM PF06949 YP_002751746.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_002751747.1 identified by match to protein family HMM PF06135 YP_002751748.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002751750.1 identified by match to protein family HMM PF01594 YP_002751751.1 identified by glimmer; putative YP_002751752.1 identified by glimmer; putative YP_002751754.1 identified by match to protein family HMM TIGR01448 YP_002751755.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002751756.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_002751757.1 identified by match to protein family HMM PF00266 YP_002751758.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_002751759.1 identified by match to protein family HMM PF00004 YP_002751760.1 identified by match to protein family HMM TIGR02894 YP_002751761.1 identified by match to protein family HMM PF00899 YP_002751762.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002751763.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002751765.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_002751766.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_002751767.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_002751768.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_002751769.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002751770.1 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_002751772.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; match to protein family HMM TIGR02900 YP_002751773.1 identified by match to protein family HMM PF04239 YP_002751775.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_002751776.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_002751777.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_002751779.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_002751780.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_002751781.1 identified by match to protein family HMM PF01497 YP_002751782.1 identified by match to protein family HMM PF08955; match to protein family HMM PF08977 YP_002751783.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002751784.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00892 YP_002751785.1 identified by match to protein family HMM PF01022; match to protein family HMM PF08279 YP_002751786.1 identified by glimmer; putative YP_002751787.1 identified by match to protein family HMM PF09580 YP_002751788.1 identified by match to protein family HMM PF01476; match to protein family HMM TIGR02899 YP_002751789.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_002751790.1 catalyzes the formation of oxaloacetate from L-aspartate YP_002751791.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis YP_002751792.1 identified by match to protein family HMM PF02829; match to protein family HMM PF08279 YP_002751793.1 identified by match to protein family HMM PF03473; match to protein family HMM PF03475 YP_002751794.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis YP_002751795.1 identified by match to protein family HMM PF02687 YP_002751796.1 identified by match to protein family HMM PF02687 YP_002751797.1 identified by match to protein family HMM PF00005 YP_002751798.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002751799.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002751800.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_002751802.1 involved in the peptidyltransferase reaction during translation YP_002751803.1 identified by match to protein family HMM PF04327 YP_002751804.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_002751805.1 identified by match to protein family HMM TIGR00757 YP_002751806.1 identified by match to protein family HMM PF02163 YP_002751807.1 identified by match to protein family HMM PF01551 YP_002751808.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968 YP_002751809.1 blocks the formation of polar Z-ring septums YP_002751810.1 identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426 YP_002751811.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_002751812.1 functions in MreBCD complex in some organisms YP_002751813.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_002751814.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_002751816.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_002751817.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_002751818.1 identified by match to protein family HMM TIGR02904 YP_002751819.1 identified by match to protein family HMM PF01476; match to protein family HMM TIGR02907 YP_002751820.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_002751821.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_002751822.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis YP_002751823.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_002751824.1 identified by match to protein family HMM PF01578 YP_002751825.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_002751826.1 identified by match to protein family HMM PF01047 YP_002751827.1 identified by match to protein family HMM PF02566; match to protein family HMM TIGR03561 YP_002751828.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_002751829.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763 YP_002751830.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM TIGR02902 YP_002751831.1 binds and unfolds substrates as part of the ClpXP protease YP_002751832.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_002751834.1 identified by glimmer; putative YP_002751837.1 identified by glimmer; putative YP_002751839.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002751840.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_002751841.1 hydrolyzes non-standard nucleotides such as xanthine and inosine YP_002751842.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_002751844.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_002751845.1 identified by match to protein family HMM PF07690 YP_002751846.1 identified by glimmer; putative YP_002751847.1 identified by match to protein family HMM PF01965 YP_002751848.1 identified by match to protein family HMM PF00440 YP_002751849.1 identified by match to protein family HMM PF01965 YP_002751850.1 identified by glimmer; putative YP_002751851.1 identified by match to protein family HMM PF00196; match to protein family HMM PF08281 YP_002751852.1 identified by match to protein family HMM PF00860 YP_002751853.1 metallo-dependent hydrolase superfamily; deaminase with metallo-dependent hydrolase domain YP_002751854.1 identified by match to protein family HMM PF04024 YP_002751855.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002751857.1 identified by match to protein family HMM PF00230 YP_002751858.1 identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_002751859.1 identified by match to protein family HMM PF02082 YP_002751861.1 identified by match to protein family HMM PF00005 YP_002751862.1 identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533 YP_002751863.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_002751864.1 With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. YP_002751865.1 identified by glimmer; putative YP_002751866.1 identified by match to protein family HMM PF02557 YP_002751867.1 identified by match to protein family HMM PF03061 YP_002751868.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_002751869.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_002751870.1 identified by match to protein family HMM TIGR02046 YP_002751872.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_002751873.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_002751874.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_002751875.1 identified by match to protein family HMM PF01012 YP_002751876.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002751877.1 identified by match to protein family HMM PF00440; match to protein family HMM PF08359 YP_002751878.1 activates fatty acids by binding to coenzyme A YP_002751879.1 identified by match to protein family HMM PF01391 YP_002751880.1 identified by glimmer; putative YP_002751881.1 identified by match to protein family HMM PF01497 YP_002751882.1 part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome YP_002751883.1 identified by match to protein family HMM PF05163 YP_002751887.1 identified by match to protein family HMM PF00005 YP_002751888.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002751889.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002751890.1 identified by glimmer; putative YP_002751893.1 identified by match to protein family HMM PF00999 YP_002751894.1 iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source YP_002751895.1 identified by match to protein family HMM PF07170; match to protein family HMM TIGR03064 YP_002751896.1 identified by match to protein family HMM PF00005 YP_002751897.1 identified by match to protein family HMM PF01032 YP_002751898.1 identified by match to protein family HMM PF01497; match to protein family HMM TIGR03659 YP_002751899.1 identified by match to protein family HMM PF05031; match to protein family HMM PF07142; match to protein family HMM TIGR03063 YP_002751900.1 identified by match to protein family HMM PF05031; match to protein family HMM TIGR03063; match to protein family HMM TIGR03656 YP_002751901.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002751902.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002751903.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange YP_002751904.1 identified by match to protein family HMM PF02811 YP_002751905.1 identified by match to protein family HMM PF02674 YP_002751906.1 identified by match to protein family HMM PF05164 YP_002751907.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_002751910.1 identified by glimmer; putative YP_002751911.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002751912.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_002751913.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_002751914.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032 YP_002751915.1 identified by match to protein family HMM TIGR03092 YP_002751916.1 identified by match to protein family HMM PF01966 YP_002751917.1 identified by match to protein family HMM PF02517 YP_002751918.1 identified by match to protein family HMM PF02517 YP_002751919.1 identified by glimmer; putative YP_002751923.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002751925.1 identified by match to protein family HMM PF00440 YP_002751926.1 identified by match to protein family HMM PF05343 YP_002751927.1 identified by match to protein family HMM PF08761 YP_002751928.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_002751929.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_002751930.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_002751931.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_002751932.1 identified by match to protein family HMM PF08812; match to protein family HMM TIGR02834 YP_002751933.1 Primosomal protein that may act to load helicase DnaC during DNA replication YP_002751934.1 identified by match to protein family HMM PF07261 YP_002751935.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_002751936.1 Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine YP_002751937.1 identified by glimmer; putative YP_002751938.1 NADP-dependent; catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; active during gluconeogenesis YP_002751939.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_002751940.1 identified by match to protein family HMM PF02659; match to protein family HMM TIGR02840 YP_002751941.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_002751942.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_002751943.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_002751944.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002751946.1 identified by match to protein family HMM PF01575 YP_002751947.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_002751948.1 Converts isocitrate to alpha ketoglutarate YP_002751949.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate YP_002751950.1 identified by match to protein family HMM PF04284 YP_002751951.1 identified by match to protein family HMM PF01594; match to protein family HMM TIGR02872 YP_002751952.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein YP_002751953.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002751954.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_002751955.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_002751956.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_002751957.1 identified by match to protein family HMM PF00392 YP_002751958.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949 YP_002751959.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria. YP_002751962.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_002751966.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002751967.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03061; match to protein family HMM PF07085 YP_002751968.1 identified by glimmer; putative YP_002751969.1 catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins YP_002751970.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002751976.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002751978.1 identified by match to protein family HMM PF00583 YP_002751979.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002751980.1 identified by glimmer; putative YP_002751981.1 identified by match to protein family HMM PF01381 YP_002751982.1 identified by glimmer; putative YP_002751983.1 identified by match to protein family HMM PF01262; match to protein family HMM PF01488; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_002751984.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002751985.1 identified by match to protein family HMM PF00582 YP_002751988.1 identified by glimmer; putative YP_002751989.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_002751990.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_002751993.1 identified by match to protein family HMM PF02588 YP_002751995.1 identified by match to protein family HMM PF00293 YP_002751996.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_002751997.1 identified by match to protein family HMM PF02384 YP_002751998.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002751999.1 identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874 YP_002752001.1 catalyzes the phosphorylation of NAD to NADP YP_002752002.1 identified by match to protein family HMM PF07969 YP_002752003.1 identified by match to protein family HMM PF00903; match to protein family HMM PF06983 YP_002752004.1 identified by match to protein family HMM PF00501 YP_002752005.1 identified by match to protein family HMM PF00269 YP_002752006.1 Required for the synthesis of the thiazole moiety YP_002752007.1 identified by match to protein family HMM PF00266 YP_002752008.1 acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation YP_002752009.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002752010.1 identified by match to protein family HMM PF00892 YP_002752011.1 identified by match to protein family HMM PF00440 YP_002752012.1 identified by match to protein family HMM PF01590 YP_002752013.1 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine YP_002752014.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002752015.1 identified by glimmer; putative YP_002752016.1 identified by glimmer; putative YP_002752017.1 identified by glimmer; putative YP_002752018.1 identified by glimmer; putative YP_002752019.1 identified by glimmer; putative YP_002752020.1 identified by glimmer; putative YP_002752022.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_002752024.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_002752026.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01842 YP_002752027.1 identified by match to protein family HMM PF00850 YP_002752028.1 identified by match to protein family HMM PF00561 YP_002752029.1 identified by glimmer; putative YP_002752030.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002752031.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002752032.1 identified by match to protein family HMM PF00023 YP_002752033.1 identified by match to protein family HMM PF01408 YP_002752034.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_002752037.1 identified by glimmer; putative YP_002752039.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481 YP_002752040.1 identified by match to protein family HMM PF07537 YP_002752042.1 identified by match to protein family HMM PF06103 YP_002752043.1 identified by match to protein family HMM PF02073 YP_002752045.1 identified by glimmer; putative YP_002752046.1 identified by glimmer; putative YP_002752047.1 identified by match to protein family HMM PF02687 YP_002752048.1 identified by match to protein family HMM PF00005 YP_002752049.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002752050.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002752051.1 identified by match to protein family HMM PF00583 YP_002752052.1 identified by match to protein family HMM PF03551 YP_002752054.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_002752055.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_002752056.1 identified by match to protein family HMM PF01580; match to protein family HMM PF09397 YP_002752057.1 identified by glimmer; putative YP_002752058.1 identified by match to protein family HMM PF01588 YP_002752059.1 identified by match to protein family HMM PF07285 YP_002752060.1 identified by match to protein family HMM PF00085 YP_002752061.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog YP_002752062.1 identified by match to protein family HMM PF05343 YP_002752063.1 identified by match to protein family HMM PF03413 YP_002752064.1 identified by match to protein family HMM PF00753 YP_002752065.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_002752067.1 identified by match to protein family HMM PF01636; match to protein family HMM PF02958 YP_002752068.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104 YP_002752069.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258 YP_002752070.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases YP_002752071.1 identified by match to protein family HMM PF08220 YP_002752072.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002752073.1 identified by match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002752074.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275 YP_002752075.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002752076.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002752077.1 identified by match to protein family HMM PF01022 YP_002752078.1 identified by match to protein family HMM PF08327 YP_002752079.1 identified by glimmer; putative YP_002752082.1 identified by match to protein family HMM PF02559 YP_002752083.1 Converts glucose to D-glucono-1,5 lactone YP_002752084.1 identified by match to protein family HMM PF06800; match to protein family HMM TIGR00776 YP_002752085.1 identified by glimmer; putative YP_002752086.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682 YP_002752087.1 identified by match to protein family HMM PF02391 YP_002752088.1 identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176 YP_002752089.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_002752090.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_002752091.1 catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways YP_002752092.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666 YP_002752093.1 identified by match to protein family HMM PF01391 YP_002752094.1 identified by glimmer; putative YP_002752096.1 identified by match to protein family HMM PF00581 YP_002752097.1 identified by glimmer; putative YP_002752098.1 catalyzes the formation of O-acetyl -L-homoserine from L-homoserine and acetyl-CoA YP_002752099.1 identified by glimmer; putative YP_002752101.1 identified by match to protein family HMM PF03323 YP_002752102.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002752103.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002752104.1 identified by glimmer; putative YP_002752107.1 identified by glimmer; putative YP_002752108.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_002752109.1 identified by match to protein family HMM PF07690 YP_002752110.1 identified by match to protein family HMM PF00999 YP_002752111.1 identified by match to protein family HMM PF02080 YP_002752112.1 identified by match to protein family HMM PF00589 YP_002752113.1 identified by match to protein family HMM PF02687 YP_002752114.1 identified by match to protein family HMM PF00005 YP_002752115.1 identified by match to protein family HMM PF04171; match to protein family HMM PF04235 YP_002752116.1 identified by glimmer; putative YP_002752118.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212 YP_002752119.1 identified by match to protein family HMM PF06962 YP_002752120.1 identified by match to protein family HMM PF00005 YP_002752122.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035 YP_002752123.1 identified by match to protein family HMM PF03929 YP_002752124.1 identified by glimmer; putative YP_002752127.1 identified by match to protein family HMM PF00132 YP_002752128.1 identified by match to protein family HMM PF01569 YP_002752129.1 identified by match to protein family HMM PF00534 YP_002752131.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_002752133.1 identified by glimmer; putative YP_002752135.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_002752136.1 identified by glimmer; putative YP_002752137.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_002752138.1 identified by match to protein family HMM PF05468 YP_002752139.1 identified by glimmer; putative YP_002752140.1 identified by match to protein family HMM PF00892 YP_002752143.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752144.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_002752145.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002752146.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_002752147.1 identified by match to protein family HMM PF02518 YP_002752148.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002752149.1 identified by match to protein family HMM PF00561 YP_002752150.1 identified by match to protein family HMM PF00884 YP_002752151.1 identified by glimmer; putative YP_002752152.1 identified by glimmer; putative YP_002752154.1 identified by match to protein family HMM PF00005 YP_002752155.1 identified by match to protein family HMM PF00528 YP_002752156.1 identified by glimmer; putative YP_002752157.1 identified by glimmer; putative YP_002752158.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002752160.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR02705 YP_002752162.1 identified by glimmer; putative YP_002752164.1 identified by glimmer; putative YP_002752165.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_002752166.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_002752167.1 identified by match to protein family HMM PF00484 YP_002752168.1 identified by match to protein family HMM PF01654 YP_002752169.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_002752171.1 identified by glimmer; putative YP_002752172.1 identified by match to protein family HMM PF00395; match to protein family HMM PF05901 YP_002752173.1 identified by match to protein family HMM PF02698 YP_002752174.1 identified by match to protein family HMM PF02588 YP_002752175.1 identified by glimmer; putative YP_002752177.1 identified by glimmer; putative YP_002752179.1 identified by match to protein family HMM PF04012 YP_002752185.1 identified by match to protein family HMM PF00082 YP_002752186.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002752187.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752189.1 identified by glimmer; putative YP_002752190.1 identified by glimmer; putative YP_002752191.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00437 YP_002752192.1 identified by match to protein family HMM PF04023 YP_002752193.1 identified by match to protein family HMM PF09515; match to protein family HMM TIGR02357 YP_002752194.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002752195.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002752196.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_002752197.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_002752198.1 identified by glimmer; putative YP_002752199.1 identified by glimmer; putative YP_002752200.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_002752201.1 identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147 YP_002752203.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_002752204.1 identified by match to protein family HMM TIGR01784 YP_002752205.1 identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655 YP_002752206.1 identified by match to protein family HMM PF09335 YP_002752208.1 identified by match to protein family HMM PF00165 YP_002752209.1 identified by match to protein family HMM PF08863 YP_002752210.1 identified by match to protein family HMM PF02687 YP_002752211.1 identified by match to protein family HMM PF00005 YP_002752212.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_002752213.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002752214.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002752217.1 identified by match to protein family HMM PF00005 YP_002752218.1 identified by match to protein family HMM PF02687 YP_002752219.1 identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732 YP_002752220.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791 YP_002752221.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002752222.1 identified by match to protein family HMM PF00294 YP_002752223.1 identified by match to protein family HMM PF07071; match to protein family HMM TIGR03581 YP_002752224.1 identified by match to protein family HMM PF01212; match to protein family HMM PF03841; match to protein family HMM TIGR01437 YP_002752225.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_002752226.1 identified by match to protein family HMM PF02557 YP_002752227.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002752228.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002752229.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; match to protein family HMM TIGR01928 YP_002752230.1 converts O-succinylbenzoate to O-succinylbenzoyl-CoA YP_002752231.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA YP_002752232.1 identified by match to protein family HMM PF00561 YP_002752233.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis YP_002752234.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543 YP_002752235.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_002752236.1 identified by match to protein family HMM TIGR02890 YP_002752237.1 identified by match to protein family HMM PF00313 YP_002752238.1 identified by match to protein family HMM PF01987; match to protein family HMM TIGR00266 YP_002752239.1 identified by match to protein family HMM PF01764 YP_002752240.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093 YP_002752241.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_002752242.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR02092 YP_002752243.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_002752244.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_002752246.1 identified by glimmer; putative YP_002752247.1 Converts (S)-lactate and NAD(+) to pyruvate and NADH YP_002752248.1 identified by match to protein family HMM PF02308 YP_002752249.1 identified by match to protein family HMM PF02254; match to protein family HMM PF07885 YP_002752250.1 identified by match to protein family HMM PF08868 YP_002752251.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_002752252.1 identified by match to protein family HMM PF04070 YP_002752253.1 induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation YP_002752254.1 identified by match to protein family HMM PF00155 YP_002752255.1 identified by match to protein family HMM PF01037 YP_002752256.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002752257.1 identified by match to protein family HMM PF00561 YP_002752258.1 identified by match to protein family HMM PF08958 YP_002752259.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002752260.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00155 YP_002752261.1 identified by match to protein family HMM PF00080 YP_002752263.1 identified by match to protein family HMM PF08810 YP_002752264.1 inhibitor of the KinA pathway of sporulation YP_002752265.1 identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600 YP_002752267.1 identified by match to protein family HMM PF08713 YP_002752268.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002752269.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_002752271.1 identified by match to protein family HMM PF02632 YP_002752272.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_002752273.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_002752274.1 identified by match to protein family HMM PF02457 YP_002752275.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_002752276.1 identified by match to protein family HMM PF06725 YP_002752278.1 identified by match to protein family HMM PF00293 YP_002752279.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_002752280.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_002752281.1 identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451 YP_002752282.1 identified by match to protein family HMM PF06445 YP_002752283.1 identified by match to protein family HMM PF07690 YP_002752285.1 identified by match to protein family HMM PF04463 YP_002752286.1 identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655 YP_002752287.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049 YP_002752288.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_002752289.1 identified by match to protein family HMM PF07293 YP_002752290.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_002752291.1 identified by match to protein family HMM PF09388 YP_002752292.1 identified by match to protein family HMM PF00005 YP_002752293.1 identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245 YP_002752294.1 identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686 YP_002752295.1 identified by glimmer; putative YP_002752296.1 identified by match to protein family HMM PF02517 YP_002752297.1 identified by match to protein family HMM PF01909 YP_002752298.1 identified by match to protein family HMM PF07315 YP_002752299.1 identified by match to protein family HMM PF01106 YP_002752300.1 identified by glimmer; putative YP_002752301.1 identified by match to protein family HMM TIGR02905 YP_002752302.1 identified by match to protein family HMM PF04608 YP_002752303.1 identified by match to protein family HMM PF00583 YP_002752304.1 identified by match to protein family HMM PF02687 YP_002752305.1 identified by match to protein family HMM PF00005 YP_002752306.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_002752307.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460 YP_002752308.1 identified by match to protein family HMM PF01022; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002752309.1 identified by match to protein family HMM PF01934 YP_002752310.1 similar to GlpX type II fructose-1,6-bisphosphatase YP_002752313.1 identified by match to protein family HMM PF06265 YP_002752314.1 identified by match to protein family HMM PF09580 YP_002752315.1 identified by match to protein family HMM PF00376; match to protein family HMM PF07739; match to protein family HMM PF09278 YP_002752318.1 identified by match to protein family HMM PF00300 YP_002752319.1 identified by match to protein family HMM PF04073 YP_002752320.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_002752321.1 identified by match to protein family HMM PF01551 YP_002752322.1 identified by match to protein family HMM PF09560; match to protein family HMM TIGR02832 YP_002752323.1 identified by match to protein family HMM PF08827 YP_002752326.1 identified by match to protein family HMM PF03551 YP_002752327.1 identified by match to protein family HMM PF04892 YP_002752328.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980 YP_002752329.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994 YP_002752330.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979 YP_002752331.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981 YP_002752332.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_002752333.1 identified by match to protein family HMM PF03180 YP_002752334.1 identified by match to protein family HMM PF03180 YP_002752335.1 identified by match to protein family HMM PF00528 YP_002752336.1 identified by match to protein family HMM PF00005; match to protein family HMM PF09383 YP_002752337.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752338.1 identified by glimmer; putative YP_002752340.1 identified by match to protein family HMM PF01751 YP_002752341.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_002752342.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_002752343.1 identified by glimmer; putative YP_002752344.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002752347.1 identified by glimmer; putative YP_002752351.1 Converts (S)-lactate and NAD(+) to pyruvate and NADH YP_002752352.1 identified by match to protein family HMM PF07875 YP_002752354.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752355.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752356.1 identified by glimmer; putative YP_002752358.1 identified by match to protein family HMM PF01381 YP_002752359.1 identified by glimmer; putative YP_002752360.1 identified by match to protein family HMM PF00440 YP_002752361.1 identified by match to protein family HMM PF00753 YP_002752362.1 identified by match to protein family HMM PF00005 YP_002752365.1 identified by match to protein family HMM PF01944 YP_002752367.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002752368.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002752369.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_002752370.1 identified by glimmer; putative YP_002752371.1 identified by match to protein family HMM PF00768; match to protein family HMM PF00905 YP_002752372.1 identified by match to protein family HMM PF01619 YP_002752374.1 identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106 YP_002752375.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002752376.1 identified by match to protein family HMM PF01978 YP_002752377.1 identified by match to protein family HMM PF05738; match to protein family HMM TIGR01167 YP_002752379.1 identified by match to protein family HMM PF07690 YP_002752380.1 identified by match to protein family HMM PF00324 YP_002752383.1 involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site YP_002752384.1 identified by glimmer; putative YP_002752385.1 identified by match to protein family HMM PF02588 YP_002752386.1 identified by glimmer; putative YP_002752387.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752388.1 identified by glimmer; putative YP_002752391.1 identified by match to protein family HMM PF01381 YP_002752392.1 identified by glimmer; putative YP_002752393.1 identified by match to protein family HMM PF09335 YP_002752394.1 identified by glimmer; putative YP_002752395.1 identified by match to protein family HMM PF03734 YP_002752396.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002752397.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002752398.1 identified by match to protein family HMM PF00892 YP_002752399.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_002752400.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002752401.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002752402.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002752403.1 identified by match to protein family HMM PF01883 YP_002752404.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504 YP_002752405.1 identified by match to protein family HMM PF02678; match to protein family HMM PF07883 YP_002752406.1 identified by match to protein family HMM PF01047 YP_002752407.1 identified by glimmer; putative YP_002752408.1 identified by match to protein family HMM PF00999 YP_002752409.1 identified by match to protein family HMM PF02080 YP_002752410.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002752411.1 identified by match to protein family HMM PF00210 YP_002752412.1 identified by glimmer; putative YP_002752413.1 identified by glimmer; putative YP_002752414.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_002752415.1 identified by match to protein family HMM PF03819 YP_002752416.1 identified by match to protein family HMM PF00210 YP_002752418.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670 YP_002752419.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670 YP_002752420.1 identified by glimmer; putative YP_002752421.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002752422.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002752423.1 identified by match to protein family HMM PF01370 YP_002752426.1 identified by match to protein family HMM PF00248 YP_002752427.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002752428.1 identified by match to protein family HMM PF01638 YP_002752430.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_002752431.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_002752432.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_002752434.1 identified by match to protein family HMM PF00015 YP_002752435.1 identified by match to protein family HMM PF03372 YP_002752436.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_002752437.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_002752438.1 identified by glimmer; putative YP_002752440.1 identified by match to protein family HMM PF07690 YP_002752441.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02463 YP_002752442.1 identified by match to protein family HMM PF00583 YP_002752443.1 identified by match to protein family HMM PF06146 YP_002752444.1 identified by match to protein family HMM PF08378 YP_002752445.1 identified by glimmer; putative YP_002752446.1 identified by match to protein family HMM PF00005 YP_002752447.1 identified by match to protein family HMM PF01032 YP_002752448.1 identified by match to protein family HMM PF01032 YP_002752449.1 identified by match to protein family HMM PF01497 YP_002752450.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002752451.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_002752453.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_002752455.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_002752456.1 identified by match to protein family HMM PF04172 YP_002752457.1 increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation; inhibited by the antiholin-like proteins lrgAB YP_002752458.1 identified by match to protein family HMM PF01156 YP_002752459.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002752460.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_002752461.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_002752462.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_002752463.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_002752464.1 identified by match to protein family HMM PF04198 YP_002752465.1 identified by match to protein family HMM PF00462; match to protein family HMM PF05768 YP_002752466.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_002752467.1 identified by glimmer; putative YP_002752468.1 identified by glimmer; putative YP_002752469.1 identified by glimmer; putative YP_002752470.1 identified by glimmer; putative YP_002752471.1 identified by glimmer; putative YP_002752472.1 identified by glimmer; putative YP_002752473.1 identified by glimmer; putative YP_002752474.1 identified by glimmer; putative YP_002752475.1 identified by match to protein family HMM PF00239 YP_002752477.1 identified by glimmer; putative YP_002752478.1 identified by glimmer; putative YP_002752479.1 identified by glimmer; putative YP_002752483.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_002752484.1 identified by match to protein family HMM PF07870 YP_002752486.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838 YP_002752487.1 identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845 YP_002752488.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839 YP_002752489.1 identified by match to protein family HMM PF07870 YP_002752490.1 identified by match to protein family HMM PF04239; match to protein family HMM PF07870 YP_002752491.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_002752492.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_002752493.1 identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647 YP_002752494.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_002752495.1 identified by match to protein family HMM PF03668 YP_002752496.1 identified by match to protein family HMM PF00293 YP_002752497.1 identified by match to protein family HMM PF04018 YP_002752498.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_002752499.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002752500.1 identified by match to protein family HMM PF00132 YP_002752501.1 hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr dephosphorylation YP_002752502.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_002752503.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_002752504.1 identified by match to protein family HMM PF04020 YP_002752505.1 identified by glimmer; putative YP_002752506.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_002752507.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_002752510.1 identified by match to protein family HMM PF00376 YP_002752512.1 identified by glimmer; putative YP_002752513.1 identified by glimmer; putative YP_002752514.1 identified by match to protein family HMM PF01381 YP_002752515.1 identified by match to protein family HMM PF03601 YP_002752516.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002752517.1 identified by match to protein family HMM PF00376 YP_002752518.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_002752520.1 identified by match to protein family HMM PF01906 YP_002752521.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002752523.1 identified by match to protein family HMM PF00595; match to protein family HMM PF01471; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_002752524.1 identified by match to protein family HMM PF02687 YP_002752525.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02673 YP_002752527.1 identified by glimmer; putative YP_002752528.1 catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA YP_002752529.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_002752530.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_002752532.1 identified by match to protein family HMM PF00313 YP_002752534.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_002752535.1 identified by match to protein family HMM PF00877 YP_002752536.1 identified by match to protein family HMM PF01638 YP_002752537.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002752538.1 identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257 YP_002752539.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002752540.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_002752541.1 identified by match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_002752542.1 identified by match to protein family HMM PF00953 YP_002752543.1 identified by match to protein family HMM PF01522 YP_002752544.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF03610; match to protein family HMM PF07728 YP_002752545.1 identified by match to protein family HMM PF07452 YP_002752546.1 identified by match to protein family HMM PF02417; match to protein family HMM TIGR00937 YP_002752547.1 identified by match to protein family HMM PF04794 YP_002752548.1 identified by match to protein family HMM PF02056 YP_002752549.1 identified by match to protein family HMM PF02255 YP_002752550.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00359; match to protein family HMM TIGR00410 YP_002752551.1 identified by match to protein family HMM PF02302 YP_002752552.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_002752553.1 Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine YP_002752555.1 identified by match to protein family HMM PF04397 YP_002752556.1 identified by glimmer; putative YP_002752557.1 identified by match to protein family HMM PF02255 YP_002752558.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00359; match to protein family HMM TIGR00410 YP_002752559.1 identified by match to protein family HMM PF02302; match to protein family HMM TIGR00853 YP_002752560.1 identified by match to protein family HMM PF00375 YP_002752562.1 identified by match to protein family HMM PF00903 YP_002752563.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_002752564.1 identified by match to protein family HMM PF05738; match to protein family HMM TIGR01167 YP_002752565.1 identified by match to protein family HMM PF01345; match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR01451 YP_002752567.1 identified by match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_002752568.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002752570.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752571.1 identified by match to protein family HMM PF01654 YP_002752573.1 identified by match to protein family HMM PF02040; match to protein family HMM PF03600 YP_002752574.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_002752575.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795 YP_002752576.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_002752579.1 identified by match to protein family HMM PF06803 YP_002752580.1 identified by match to protein family HMM PF00884 YP_002752581.1 catalyzes the transamination of D-amino acids and their alpha-keto acids YP_002752583.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804 YP_002752585.1 identified by match to protein family HMM PF00535 YP_002752586.1 identified by glimmer; putative YP_002752587.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_002752588.1 identified by match to protein family HMM PF06347; match to protein family HMM PF06725; match to protein family HMM PF08239 YP_002752589.1 identified by glimmer; putative YP_002752593.1 identified by match to protein family HMM PF04434 YP_002752594.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271 YP_002752596.1 identified by match to protein family HMM PF07872 YP_002752597.1 identified by glimmer; putative YP_002752599.1 identified by match to protein family HMM PF06338 YP_002752600.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_002752603.1 identified by match to protein family HMM PF02687 YP_002752604.1 identified by match to protein family HMM PF00005 YP_002752605.1 identified by match to protein family HMM TIGR01730 YP_002752606.1 identified by match to protein family HMM PF01381 YP_002752608.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00881 YP_002752611.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002752612.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002752613.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218 YP_002752614.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427 YP_002752615.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002752616.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_002752618.1 attenuator function for control of operon expression YP_002752619.1 identified by match to protein family HMM PF01238; match to protein family HMM TIGR00218 YP_002752620.1 identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883 YP_002752621.1 identified by match to protein family HMM PF00534 YP_002752622.1 identified by match to protein family HMM PF00534 YP_002752623.1 identified by match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_002752625.1 identified by match to protein family HMM PF00534 YP_002752626.1 identified by match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002752627.1 identified by match to protein family HMM PF02397 YP_002752628.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_002752629.1 identified by match to protein family HMM PF02811 YP_002752630.1 identified by match to protein family HMM TIGR01007 YP_002752631.1 identified by match to protein family HMM PF02706 YP_002752632.1 identified by match to protein family HMM TIGR01007 YP_002752633.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_002752634.1 identified by match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904 YP_002752636.1 identified by glimmer; putative YP_002752637.1 identified by match to protein family HMM PF01551 YP_002752638.1 identified by match to protein family HMM PF01061 YP_002752639.1 identified by match to protein family HMM PF00005 YP_002752640.1 identified by match to protein family HMM PF00005; match to protein family HMM PF04397 YP_002752641.1 identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870 YP_002752642.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002752643.1 identified by match to protein family HMM PF08680 YP_002752644.1 identified by match to protein family HMM PF06612; match to protein family HMM TIGR02327 YP_002752645.1 Catalyzes the transfer of electrons from NADH to quinone YP_002752646.1 Catalyzes the transfer of electrons from NADH to quinone YP_002752647.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_002752648.1 Catalyzes the transfer of electrons from NADH to quinone YP_002752649.1 Catalyzes the transfer of electrons from NADH to quinone YP_002752650.1 Catalyzes the transfer of electrons from NADH to quinone YP_002752651.1 Catalyzes the transfer of electrons from NADH to quinone YP_002752652.1 catalyzes the transfer of electrons from NADH to ubiquinone YP_002752653.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_002752654.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_002752655.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_002752656.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002752657.1 identified by match to protein family HMM PF06161 YP_002752658.1 identified by match to protein family HMM PF06161 YP_002752659.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_002752660.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002752661.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_002752662.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002752663.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_002752664.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_002752665.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_002752666.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002752667.1 identified by match to protein family HMM PF05468 YP_002752669.1 identified by glimmer; putative YP_002752670.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_002752671.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002752672.1 identified by match to protein family HMM PF00665 YP_002752673.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01527 YP_002752674.1 identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440 YP_002752675.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_002752676.1 identified by match to protein family HMM PF01451 YP_002752677.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_002752678.1 identified by match to protein family HMM PF07681 YP_002752683.1 identified by match to protein family HMM PF02659 YP_002752684.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_002752686.1 identified by match to protein family HMM PF09551; match to protein family HMM TIGR02837 YP_002752687.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03534 YP_002752688.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_002752689.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_002752690.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_002752691.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_002752692.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_002752693.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002752694.1 identified by glimmer; putative YP_002752695.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_002752696.1 identified by match to protein family HMM PF00072 YP_002752698.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002752699.1 participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling YP_002752700.1 identified by match to protein family HMM PF00440 YP_002752701.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002752702.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002752703.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_002752704.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002752705.1 identified by match to protein family HMM PF02754 YP_002752706.1 identified by match to protein family HMM PF00614 YP_002752707.1 identified by match to protein family HMM PF03851; match to protein family HMM TIGR00629 YP_002752708.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002752709.1 identified by match to protein family HMM PF05968 YP_002752710.1 identified by match to protein family HMM PF01381 YP_002752711.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF07504 YP_002752712.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_002752713.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002752714.1 identified by match to protein family HMM PF01061 YP_002752715.1 identified by match to protein family HMM PF00005 YP_002752716.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential YP_002752717.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167 YP_002752718.1 identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389 YP_002752719.1 identified by glimmer; putative YP_002752721.1 identified by glimmer; putative YP_002752722.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_002752723.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002752724.1 identified by match to protein family HMM PF09148 YP_002752725.1 identified by match to protein family HMM PF02016 YP_002752726.1 identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655 YP_002752728.1 identified by glimmer; putative YP_002752729.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_002752730.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_002752731.1 identified by match to protein family HMM PF07690 YP_002752732.1 identified by match to protein family HMM PF00376; match to protein family HMM PF09278 YP_002752733.1 identified by glimmer; putative YP_002752734.1 identified by match to protein family HMM PF03009 YP_002752735.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002752736.1 identified by match to protein family HMM PF08741 YP_002752737.1 identified by match to protein family HMM PF02163 YP_002752738.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown YP_002752739.1 identified by match to protein family HMM PF01966 YP_002752740.1 identified by match to protein family HMM PF01497 YP_002752741.1 identified by match to protein family HMM PF00005 YP_002752742.1 identified by match to protein family HMM PF01032 YP_002752743.1 identified by match to protein family HMM PF01032 YP_002752745.1 identified by match to protein family HMM TIGR02894 YP_002752747.1 identified by match to protein family HMM PF03099 YP_002752748.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta YP_002752749.1 identified by glimmer; putative YP_002752750.1 identified by match to protein family HMM PF06778 YP_002752751.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943 YP_002752752.1 identified by match to protein family HMM PF07486 YP_002752753.1 identified by match to protein family HMM PF09671; match to protein family HMM TIGR02728 YP_002752754.1 identified by match to protein family HMM PF04241 YP_002752756.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885 YP_002752757.1 identified by match to protein family HMM PF00860 YP_002752758.1 identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002752760.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_002752762.1 identified by match to protein family HMM PF00005 YP_002752763.1 identified by match to protein family HMM PF00657 YP_002752764.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002752765.1 identified by match to protein family HMM PF02588 YP_002752766.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002752767.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_002752768.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol YP_002752769.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254 YP_002752770.1 activator of nucleoside metabolism YP_002752771.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds YP_002752772.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_002752773.1 identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002752774.1 catalyzes the phosphorylation of three vitamin B6 precursors, pyridoxal, pyridoxine and pyridoxamine YP_002752775.1 identified by match to protein family HMM PF00990; match to protein family HMM PF07694; match to protein family HMM TIGR00254 YP_002752776.1 identified by match to protein family HMM PF04328 YP_002752777.1 identified by match to protein family HMM PF02554 YP_002752778.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002752779.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002752781.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_002752782.1 identified by match to protein family HMM PF00534 YP_002752784.1 identified by match to protein family HMM PF03458 YP_002752785.1 identified by match to protein family HMM PF00015 YP_002752787.1 identified by match to protein family HMM PF03061 YP_002752788.1 identified by match to protein family HMM PF01943 YP_002752789.1 identified by match to protein family HMM PF00535 YP_002752790.1 identified by match to protein family HMM PF00005 YP_002752793.1 identified by match to protein family HMM PF04138 YP_002752794.1 identified by match to protein family HMM PF00535 YP_002752795.1 identified by match to protein family HMM PF00440 YP_002752796.1 identified by match to protein family HMM PF00873 YP_002752797.1 identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401 YP_002752798.1 identified by match to protein family HMM PF01594 YP_002752799.1 in conjunction with LrgA this protein inhibits the expression or activity of extracellular murein hydrolases YP_002752800.1 negatively regulates murein hydrolase activity YP_002752801.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002752802.1 identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694 YP_002752803.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002752804.1 identified by match to protein family HMM PF02028 YP_002752805.1 identified by match to protein family HMM PF02898 YP_002752806.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_002752807.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_002752808.1 identified by match to protein family HMM PF02293 YP_002752809.1 identified by glimmer; putative YP_002752810.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_002752811.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_002752812.1 identified by match to protein family HMM PF08876 YP_002752813.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_002752814.1 identified by match to protein family HMM PF01757 YP_002752815.1 identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306 YP_002752816.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181 YP_002752817.1 identified by match to protein family HMM PF04055 YP_002752818.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_002752820.1 identified by match to protein family HMM PF00089 YP_002752821.1 identified by match to protein family HMM PF00753 YP_002752822.1 identified by match to protein family HMM PF09648 YP_002752823.1 identified by match to protein family HMM PF07435 YP_002752824.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_002752825.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002752826.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_002752827.1 unwinds double stranded DNA YP_002752828.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_002752829.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_002752831.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_002752832.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_002752833.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_002752834.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_002752835.1 identified by match to protein family HMM PF06107 YP_002752836.1 identified by match to protein family HMM PF00924 YP_002752837.1 identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841 YP_002752838.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_002752839.1 identified by match to protein family HMM PF01656 YP_002752840.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_002752841.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_002752842.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_002752843.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_002752844.1 identified by match to protein family HMM PF01424 YP_002752845.1 involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site; necessary for sporulation YP_002752846.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_002752847.1 in Escherichia coli transcription of this gene is enhanced by polyamines YP_002752849.1 identified by glimmer; putative YP_002752850.1 identified by glimmer; putative YP_002752851.1 identified by glimmer; putative YP_002752852.1 identified by glimmer; putative YP_002752853.1 identified by glimmer; putative YP_002752854.1 identified by glimmer; putative YP_002752855.1 identified by glimmer; putative YP_002752857.1 identified by glimmer; putative YP_002752858.1 identified by glimmer; putative YP_002752859.1 identified by glimmer; putative YP_002752860.1 identified by glimmer; putative YP_002752861.1 identified by glimmer; putative YP_002752862.1 identified by glimmer; putative YP_002752863.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002752867.1 identified by glimmer; putative YP_002752870.1 identified by glimmer; putative YP_002752871.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_002752872.1 identified by glimmer; putative YP_002752873.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002752874.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752876.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752877.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752878.1 identified by match to protein family HMM PF05168 YP_002752879.1 identified by match to protein family HMM PF01909 YP_002752881.1 identified by glimmer; putative YP_002752882.1 identified by glimmer; putative YP_002752883.1 identified by glimmer; putative YP_002752884.1 identified by glimmer; putative YP_002752885.1 identified by glimmer; putative YP_002752886.1 identified by glimmer; putative YP_002752887.1 identified by glimmer; putative YP_002752888.1 identified by glimmer; putative YP_002752889.1 identified by glimmer; putative YP_002752890.1 identified by glimmer; putative YP_002752891.1 identified by match to protein family HMM PF07853 YP_002752892.1 identified by match to protein family HMM PF01022 YP_002752893.1 identified by match to protein family HMM PF09397 YP_002752896.1 identified by match to protein family HMM PF00091 YP_002752899.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01527 YP_002752900.1 identified by match to protein family HMM PF00665 YP_002752907.1 identified by match to protein family HMM PF00395 YP_002752911.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR03177 YP_002752913.1 identified by match to protein family HMM PF00437 YP_002752915.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002752920.1 identified by match to protein family HMM PF06030 YP_002752929.1 identified by match to protein family HMM TIGR01784 YP_002752936.1 identified by match to protein family HMM PF00877; match to protein family HMM PF01551 YP_002752938.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002752939.1 identified by match to protein family HMM PF08245 YP_002752941.1 identified by match to protein family HMM PF09587 YP_002752942.1 identified by match to protein family HMM PF01019 YP_002752944.1 identified by glimmer; putative YP_002752945.1 identified by match to protein family HMM PF04171; match to protein family HMM PF04235 YP_002752946.1 identified by match to protein family HMM PF00085 YP_002752947.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01385 YP_002752948.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002752949.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF07282 YP_002752950.1 identified by glimmer; putative YP_002752951.1 identified by match to protein family HMM PF05031 YP_002752953.1 identified by glimmer; putative YP_002752954.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00395 YP_002752955.1 identified by match to protein family HMM PF01569 YP_002752957.1 identified by glimmer; putative YP_002752959.1 identified by match to protein family HMM PF00535; match to protein family HMM PF03142 YP_002752960.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_002752961.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_002752962.1 identified by glimmer; putative YP_002752964.1 identified by match to protein family HMM PF00665 YP_002752966.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752967.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752970.1 identified by glimmer; putative YP_002752971.1 identified by glimmer; putative YP_002752972.1 identified by glimmer; putative YP_002752973.1 identified by glimmer; putative YP_002752974.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752975.1 identified by match to protein family HMM PF03497; match to protein family HMM PF07737 YP_002752977.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00156 YP_002752978.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752979.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752980.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752981.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752982.1 identified by match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279; match to protein family HMM PF08280 YP_002752983.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002752984.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002752987.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752988.1 identified by glimmer; putative YP_002752989.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_002752990.1 identified by match to protein family HMM PF04231 YP_002752991.1 identified by match to protein family HMM PF03495; match to protein family HMM PF07691 YP_002752993.1 identified by match to protein family HMM PF01022 YP_002752994.1 identified by match to protein family HMM PF07737 YP_002752995.1 identified by match to protein family HMM PF03495; match to protein family HMM PF07691 YP_002752996.1 identified by match to protein family HMM PF01022 YP_002752997.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752998.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002752999.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002753001.1 identified by match to protein family HMM PF07737 YP_002753002.1 identified by glimmer; putative YP_002753003.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002753004.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002753005.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002753006.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002753007.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002753010.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002753011.1 identified by match to protein family HMM PF00589 YP_002753012.1 identified by glimmer; putative YP_002753015.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002753016.1 identified by glimmer; putative YP_002753018.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002753019.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002753020.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002753021.1 identified by match to protein family HMM PF06013 YP_002753022.1 identified by match to protein family HMM PF09346 YP_002753023.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002753024.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002753025.1 identified by match to protein family HMM PF01527 YP_002753027.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002753028.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002753029.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002753030.1 identified by glimmer; putative YP_002753031.1 identified by match to protein family HMM PF09223 YP_002753032.1 identified by glimmer; putative YP_002753033.1 identified by glimmer; putative YP_002753034.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS YP_002753035.1 identified by match to protein family HMM PF00580 YP_002753036.1 identified by match to protein family HMM PF02463 YP_002753037.1 identified by glimmer; putative YP_002753041.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002753046.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383 YP_002753047.1 identified by match to protein family HMM PF01022 YP_002753048.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02600 YP_002753051.1 identified by match to protein family HMM PF00565 YP_002753052.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002753053.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002753056.1 identified by glimmer; putative