-- dump date 20140618_214131 -- class Genbank::CDS -- table cds_note -- id note YP_002335763.1 identified by match to protein family HMM PF02486 YP_002335767.1 identified by glimmer; putative YP_002335771.1 identified by glimmer; putative YP_002335774.1 identified by glimmer; putative YP_002335777.1 identified by glimmer; putative YP_002335779.1 identified by match to protein family HMM PF00041 YP_002335780.1 identified by glimmer; putative YP_002335781.1 identified by glimmer; putative YP_002335782.1 identified by glimmer; putative YP_002335786.1 identified by match to protein family HMM PF01022 YP_002335787.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002335788.1 identified by match to protein family HMM TIGR02894 YP_002335793.1 identified by glimmer; putative YP_002335794.1 identified by match to protein family HMM PF02899 YP_002335797.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002335798.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002335799.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01507 YP_002335800.1 identified by match to protein family HMM PF05168 YP_002335801.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01909 YP_002335803.1 identified by match to protein family HMM PF00899 YP_002335804.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002335812.1 identified by match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663 YP_002335814.1 identified by match to protein family HMM PF00078 YP_002335816.1 identified by glimmer; putative YP_002335819.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002335827.1 identified by match to protein family HMM PF01156 YP_002335828.1 identified by match to protein family HMM PF00078; match to protein family HMM PF08388 YP_002335829.1 identified by match to protein family HMM PF09397 YP_002335832.1 identified by match to protein family HMM PF00091 YP_002335835.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_002335836.1 identified by glimmer; putative YP_002335842.1 identified by match to protein family HMM PF00395 YP_002335845.1 identified by match to protein family HMM PF00665 YP_002335848.1 identified by match to protein family HMM PF08666; match to protein family HMM TIGR03177 YP_002335850.1 identified by match to protein family HMM PF00437 YP_002335852.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002335856.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_002335857.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002335858.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002335865.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_002335866.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_002335867.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002335868.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002335869.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002335873.1 identified by glimmer; putative YP_002335874.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002335875.1 identified by glimmer; putative YP_002335878.1 identified by glimmer; putative YP_002335882.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01609 YP_002335885.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796 YP_002335887.1 identified by match to protein family HMM PF00395; match to protein family HMM PF00545; match to protein family HMM PF01473 YP_002335888.1 identified by match to protein family HMM PF01337 YP_002335889.1 identified by glimmer; putative YP_002335893.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002335894.1 identified by match to protein family HMM TIGR01784 YP_002335901.1 identified by match to protein family HMM PF00078 YP_002335904.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00877; match to protein family HMM PF01551 YP_002335908.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002335909.1 identified by match to protein family HMM PF02517 YP_002335912.1 identified by match to protein family HMM PF01609 YP_002335913.1 identified by glimmer; putative YP_002335914.1 identified by match to protein family HMM PF04171; match to protein family HMM PF04235 YP_002335915.1 identified by match to protein family HMM PF00085 YP_002335918.1 identified by match to protein family HMM PF00216 YP_002335919.1 identified by glimmer; putative YP_002335922.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_002335923.1 identified by match to protein family HMM PF01381 YP_002335924.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_002335925.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002335930.1 identified by match to protein family HMM PF06013 YP_002335931.1 identified by match to protein family HMM PF09346 YP_002335935.1 identified by match to protein family HMM PF01022 YP_002335937.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01526 YP_002335938.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01526 YP_002335939.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796 YP_002335940.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_002335941.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796 YP_002335943.1 identified by match to protein family HMM PF01520 YP_002335944.1 identified by match to protein family HMM PF00300 YP_002335945.1 identified by match to protein family HMM PF00665 YP_002335946.1 identified by match to protein family HMM PF00308; match to protein family HMM PF01695 YP_002335947.1 identified by match to protein family HMM PF02796 YP_002335948.1 identified by match to protein family HMM PF00165 YP_002335949.1 identified by match to protein family HMM PF00903 YP_002335950.1 identified by match to protein family HMM PF01526 YP_002335951.1 identified by match to protein family HMM PF00239 YP_002335953.1 identified by match to protein family HMM PF01381 YP_002335955.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002335956.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF04239 YP_002335957.1 identified by match to protein family HMM PF00614 YP_002335958.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF04239 YP_002335960.1 identified by match to protein family HMM PF07870 YP_002335962.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838 YP_002335963.1 identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845 YP_002335964.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839 YP_002335966.1 identified by match to protein family HMM PF04239; match to protein family HMM PF07870 YP_002335967.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_002335968.1 identified by match to protein family HMM PF00239; match to protein family HMM PF02796 YP_002335969.1 identified by match to protein family HMM TIGR02887 YP_002335970.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002335971.1 identified by match to protein family HMM PF03323 YP_002335975.1 identified by match to protein family HMM PF01638 YP_002335976.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02818 YP_002335977.1 identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821 YP_002335979.1 Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine YP_002335982.1 identified by match to protein family HMM TIGR02887 YP_002335984.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002335985.1 identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451 YP_002335986.1 identified by match to protein family HMM PF00857 YP_002335987.1 identified by glimmer; putative YP_002335990.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002335991.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002335994.1 identified by glimmer; putative YP_002335996.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerS YP_002335999.1 identified by match to protein family HMM PF00515 YP_002336001.1 identified by glimmer; putative YP_002336002.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383 YP_002336003.1 identified by match to protein family HMM PF01022 YP_002336004.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02600 YP_002336007.1 identified by match to protein family HMM PF00565 YP_002336008.1 identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751 YP_002336017.1 identified by match to protein family HMM PF08378 YP_002336018.1 identified by glimmer; putative YP_002336019.1 identified by glimmer; putative YP_002336027.1 identified by match to protein family HMM PF00078; match to protein family HMM PF01844 YP_002336028.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002336030.1 identified by glimmer; putative YP_002336033.1 identified by match to protein family HMM PF00005 YP_002336034.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM PF08659; match to protein family HMM TIGR01733 YP_002336035.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733 YP_002336036.1 identified by match to protein family HMM PF00975 YP_002336037.1 identified by match to protein family HMM PF01648 YP_002336038.1 identified by match to protein family HMM PF00561 YP_002336039.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002336040.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002336041.1 identified by match to protein family HMM PF02517 YP_002336044.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01022 YP_002336047.1 identified by match to protein family HMM PF00041; match to protein family HMM PF02839; match to protein family HMM PF03067 YP_002336048.1 identified by glimmer; putative YP_002336050.1 identified by match to protein family HMM PF00269 YP_002336052.1 identified by match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_002336053.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF07504 YP_002336056.1 identified by match to protein family HMM PF00877 YP_002336057.1 identified by glimmer; putative YP_002336059.1 identified by glimmer; putative YP_002336060.1 identified by glimmer; putative YP_002336061.1 identified by match to protein family HMM PF01381 YP_002336062.1 identified by match to protein family HMM PF01381 YP_002336063.1 identified by match to protein family HMM PF05738; match to protein family HMM TIGR01167 YP_002336064.1 identified by glimmer; putative YP_002336065.1 identified by glimmer; putative YP_002336066.1 identified by glimmer; putative YP_002336067.1 identified by glimmer; putative YP_002336068.1 identified by glimmer; putative YP_002336069.1 identified by glimmer; putative YP_002336070.1 identified by glimmer; putative YP_002336072.1 identified by glimmer; putative YP_002336073.1 identified by glimmer; putative YP_002336075.1 identified by glimmer; putative YP_002336076.1 identified by glimmer; putative YP_002336077.1 identified by glimmer; putative YP_002336078.1 identified by match to protein family HMM PF01551 YP_002336079.1 identified by glimmer; putative YP_002336080.1 identified by glimmer; putative YP_002336082.1 identified by glimmer; putative YP_002336085.1 identified by match to protein family HMM PF00656 YP_002336086.1 identified by glimmer; putative YP_002336088.1 identified by match to protein family HMM TIGR01784 YP_002336089.1 identified by glimmer; putative YP_002336090.1 identified by glimmer; putative YP_002336091.1 identified by match to protein family HMM PF00589 YP_002336092.1 identified by glimmer; putative YP_002336095.1 identified by glimmer; putative YP_002336096.1 identified by glimmer; putative YP_002336097.1 identified by glimmer; putative YP_002336098.1 identified by glimmer; putative YP_002336101.1 identified by glimmer; putative YP_002336102.1 identified by glimmer; putative YP_002336107.1 identified by glimmer; putative YP_002336108.1 identified by glimmer; putative YP_002336110.1 identified by glimmer; putative YP_002336114.1 identified by glimmer; putative YP_002336115.1 identified by match to protein family HMM PF00226 YP_002336116.1 identified by glimmer; putative YP_002336117.1 identified by match to protein family HMM PF00589 YP_002336119.1 identified by glimmer; putative YP_002336120.1 identified by match to protein family HMM PF01076 YP_002336121.1 identified by glimmer; putative YP_002336122.1 identified by glimmer; putative YP_002336123.1 identified by glimmer; putative YP_002336124.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. YP_002336125.1 binds the polymerase to DNA and acts as a sliding clamp YP_002336126.1 identified by match to protein family HMM TIGR02988 YP_002336127.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA YP_002336128.1 negatively supercoils closed circular double-stranded DNA YP_002336129.1 negatively supercoils closed circular double-stranded DNA YP_002336131.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate YP_002336132.1 identified by match to protein family HMM PF00144; match to protein family HMM PF00768; match to protein family HMM PF07943 YP_002336133.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate YP_002336134.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate YP_002336135.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002336136.1 identified by glimmer; putative YP_002336137.1 identified by match to protein family HMM PF01712 YP_002336138.1 identified by match to protein family HMM PF01712 YP_002336139.1 identified by match to protein family HMM PF00857 YP_002336140.1 identified by match to protein family HMM PF00383 YP_002336141.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA YP_002336142.1 identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103 YP_002336143.1 involved in a recombinational process of DNA repair, independent of the recBC complex YP_002336145.1 identified by match to protein family HMM PF07441; match to protein family HMM TIGR02862 YP_002336147.1 identified by match to protein family HMM PF01276; match to protein family HMM PF03711 YP_002336148.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP) YP_002336149.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA YP_002336150.1 identified by match to protein family HMM PF04468 YP_002336151.1 in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA YP_002336153.1 identified by match to protein family HMM PF01541 YP_002336154.1 identified by match to protein family HMM PF00590; match to protein family HMM TIGR00096 YP_002336155.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_002336156.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_002336157.1 identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010 YP_002336158.1 identified by match to protein family HMM PF01751; match to protein family HMM TIGR00334 YP_002336159.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin YP_002336160.1 identified by match to protein family HMM PF05582; match to protein family HMM TIGR02855 YP_002336161.1 identified by match to protein family HMM PF06257 YP_002336163.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis YP_002336164.1 identified by match to protein family HMM PF00156; match to protein family HMM PF09182; match to protein family HMM TIGR01743 YP_002336165.1 identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004 YP_002336166.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus YP_002336167.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis YP_002336168.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP YP_002336169.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation YP_002336171.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580 YP_002336172.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; match to protein family HMM TIGR02851 YP_002336173.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002336174.1 identified by match to protein family HMM PF00590; match to protein family HMM PF03819; match to protein family HMM TIGR00444 YP_002336175.1 identified by match to protein family HMM PF01479 YP_002336176.1 identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892 YP_002336177.1 identified by match to protein family HMM PF09578; match to protein family HMM TIGR02893 YP_002336178.1 identified by match to protein family HMM PF04977 YP_002336179.1 identified by match to protein family HMM PF00575 YP_002336180.1 identified by match to protein family HMM PF07228; match to protein family HMM TIGR02865 YP_002336181.1 identified by match to protein family HMM PF01171; match to protein family HMM PF06508; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433 YP_002336182.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_002336183.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM PF07728; match to protein family HMM TIGR01241 YP_002336184.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP YP_002336185.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers YP_002336186.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_002336187.1 identified by match to protein family HMM PF00425; match to protein family HMM PF04715 YP_002336188.1 amphibolic enzyme subunit from Bacillus subtilis performs both in anthranilate and para-aminobenzoate synthesis YP_002336189.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate YP_002336190.1 identified by match to protein family HMM PF00809; match to protein family HMM TIGR01496 YP_002336191.1 identified by match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526 YP_002336192.1 identified by match to protein family HMM PF01288; match to protein family HMM TIGR01498 YP_002336193.1 identified by match to protein family HMM PF01381 YP_002336194.1 identified by match to protein family HMM PF01180; match to protein family HMM PF01207; match to protein family HMM TIGR00737 YP_002336195.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1 YP_002336197.1 identified by match to protein family HMM PF05848 YP_002336198.1 identified by match to protein family HMM PF02151 YP_002336199.1 identified by match to protein family HMM PF00217 YP_002336200.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728 YP_002336201.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents YP_002336202.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair YP_002336205.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers YP_002336206.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate YP_002336207.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation YP_002336208.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR01172 YP_002336209.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA YP_002336210.1 identified by match to protein family HMM PF00636 YP_002336211.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186 YP_002336212.1 identified by match to protein family HMM PF05991 YP_002336213.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_002336214.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force YP_002336215.1 Modulates Rho-dependent transcription termination YP_002336216.1 binds directly to 23S ribosomal RNA YP_002336217.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA YP_002336218.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit YP_002336219.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors YP_002336220.1 identified by match to protein family HMM PF05175; match to protein family HMM PF08242 YP_002336221.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme YP_002336222.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter YP_002336223.1 identified by match to protein family HMM PF01248 YP_002336224.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance YP_002336225.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit YP_002336226.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene YP_002336227.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu YP_002336228.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex YP_002336229.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin YP_002336230.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA YP_002336231.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel YP_002336232.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation YP_002336233.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA YP_002336234.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center YP_002336235.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation YP_002336236.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e YP_002336237.1 one of the stabilizing components for the large ribosomal subunit YP_002336238.1 primary binding protein; helps mediate assembly; involved in translation fidelity YP_002336239.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase YP_002336240.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel YP_002336241.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13 YP_002336242.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif YP_002336243.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit YP_002336244.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance YP_002336245.1 binds 5S rRNA along with protein L5 and L25 YP_002336246.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance YP_002336247.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7 YP_002336248.1 late assembly protein YP_002336249.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002336250.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP YP_002336251.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_002336252.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 YP_002336253.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif YP_002336254.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA YP_002336255.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3 YP_002336256.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme YP_002336257.1 is a component of the macrolide binding site in the peptidyl transferase center YP_002336258.1 with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene YP_002336259.1 with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene YP_002336260.1 identified by match to protein family HMM PF02361 YP_002336261.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_002336262.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit YP_002336263.1 forms a direct contact with the tRNA during translation YP_002336265.1 identified by match to protein family HMM PF01520; match to protein family HMM TIGR02883 YP_002336266.1 identified by match to protein family HMM PF01883 YP_002336269.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764 YP_002336271.1 identified by match to protein family HMM PF02595; match to protein family HMM TIGR00045 YP_002336272.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01229 YP_002336273.1 identified by match to protein family HMM PF02457; match to protein family HMM TIGR00159 YP_002336274.1 identified by match to protein family HMM PF07949 YP_002336275.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate YP_002336276.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source YP_002336277.1 identified by match to protein family HMM PF00561 YP_002336278.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002336279.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01314 YP_002336280.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791 YP_002336281.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate YP_002336282.1 identified by match to protein family HMM PF00326 YP_002336284.1 identified by match to protein family HMM PF04173; match to protein family HMM PF07681 YP_002336286.1 identified by match to protein family HMM PF04542; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002336288.1 identified by glimmer; putative YP_002336289.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002336290.1 identified by match to protein family HMM PF00528 YP_002336291.1 identified by match to protein family HMM PF00005; match to protein family HMM PF09383 YP_002336292.1 identified by match to protein family HMM PF03180 YP_002336293.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002336295.1 identified by match to protein family HMM PF01565 YP_002336298.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_002336300.1 identified by match to protein family HMM PF00528 YP_002336301.1 identified by match to protein family HMM PF00528 YP_002336302.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002336303.1 identified by match to protein family HMM PF00005 YP_002336304.1 identified by match to protein family HMM PF00496 YP_002336307.1 identified by match to protein family HMM PF00496 YP_002336308.1 identified by match to protein family HMM PF00496 YP_002336309.1 identified by match to protein family HMM PF00248 YP_002336310.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_002336311.1 identified by match to protein family HMM PF04973; match to protein family HMM TIGR01528 YP_002336312.1 identified by match to protein family HMM PF06800 YP_002336313.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02141 YP_002336314.1 identified by glimmer; putative YP_002336315.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256 YP_002336316.1 identified by match to protein family HMM PF00376; match to protein family HMM PF05930; match to protein family HMM TIGR01764 YP_002336317.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002336318.1 identified by match to protein family HMM PF00892 YP_002336319.1 identified by glimmer; putative YP_002336320.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530 YP_002336321.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002336322.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002336323.1 identified by match to protein family HMM PF02588 YP_002336324.1 identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655 YP_002336325.1 identified by glimmer; putative YP_002336326.1 identified by match to protein family HMM PF01026 YP_002336328.1 identified by match to protein family HMM PF01464 YP_002336332.1 identified by glimmer; putative YP_002336333.1 identified by match to protein family HMM PF00005 YP_002336334.1 identified by glimmer; putative YP_002336335.1 identified by match to protein family HMM PF00496 YP_002336336.1 identified by match to protein family HMM PF00496 YP_002336337.1 identified by match to protein family HMM PF00528 YP_002336338.1 identified by match to protein family HMM PF00528 YP_002336339.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002336340.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002336341.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002336342.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002336343.1 identified by glimmer; putative YP_002336344.1 identified by match to protein family HMM PF00903; match to protein family HMM TIGR01263 YP_002336345.1 identified by match to protein family HMM PF01557 YP_002336346.1 identified by match to protein family HMM PF04209 YP_002336347.1 identified by match to protein family HMM PF00324 YP_002336348.1 identified by match to protein family HMM PF07690 YP_002336349.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002336350.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143 YP_002336351.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002336352.1 identified by match to protein family HMM PF03851; match to protein family HMM TIGR00629 YP_002336353.1 identified by match to protein family HMM PF01694 YP_002336354.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids YP_002336356.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 YP_002336358.1 identified by match to protein family HMM PF02452 YP_002336359.1 identified by match to protein family HMM PF00575; match to protein family HMM PF09371 YP_002336360.1 identified by match to protein family HMM PF03926 YP_002336361.1 identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150 YP_002336362.1 identified by match to protein family HMM PF00814 YP_002336363.1 identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575 YP_002336364.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity YP_002336365.1 identified by match to protein family HMM PF00005 YP_002336366.1 modulates transcription in response to the NADH/NAD(+) redox state YP_002336368.1 identified by match to protein family HMM PF02517 YP_002336369.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring YP_002336370.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth YP_002336371.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway YP_002336372.1 identified by match to protein family HMM PF00860 YP_002336373.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002336374.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002336375.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002336376.1 identified by match to protein family HMM PF01323 YP_002336378.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002336380.1 identified by glimmer; putative YP_002336381.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_002336382.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002336383.1 identified by match to protein family HMM PF00534; match to protein family HMM PF00535 YP_002336384.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002336385.1 identified by match to protein family HMM PF01619 YP_002336386.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002336387.1 identified by match to protein family HMM PF00892 YP_002336389.1 identified by match to protein family HMM PF00665 YP_002336391.1 identified by match to protein family HMM PF00731; match to protein family HMM TIGR01162 YP_002336392.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway YP_002336393.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide YP_002336394.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase YP_002336395.1 With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway YP_002336396.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_002336397.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis YP_002336398.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway YP_002336399.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis YP_002336400.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate YP_002336401.1 involved in de novo purine biosynthesis YP_002336402.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis YP_002336404.1 identified by match to protein family HMM PF01145 YP_002336406.1 PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer YP_002336407.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073 YP_002336408.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB YP_002336409.1 identified by match to protein family HMM PF07537 YP_002336410.1 identified by match to protein family HMM PF01925 YP_002336411.1 catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate YP_002336413.1 identified by match to protein family HMM PF00857 YP_002336414.1 identified by match to protein family HMM PF00005; match to protein family HMM PF09383 YP_002336415.1 identified by match to protein family HMM PF00528 YP_002336416.1 identified by match to protein family HMM PF03180 YP_002336417.1 identified by glimmer; putative YP_002336418.1 identified by glimmer; putative YP_002336419.1 identified by match to protein family HMM PF02374; match to protein family HMM TIGR00345 YP_002336420.1 identified by match to protein family HMM PF01047 YP_002336422.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain YP_002336423.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002336424.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA YP_002336425.1 similar to YegS from E. coli YP_002336426.1 identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002336427.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002336428.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate YP_002336429.1 identified by match to protein family HMM PF00158; match to protein family HMM PF07728; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_002336430.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780 YP_002336431.1 identified by match to protein family HMM PF00893 YP_002336432.1 identified by match to protein family HMM PF02073 YP_002336433.1 identified by match to protein family HMM PF01522 YP_002336434.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670 YP_002336435.1 identified by match to protein family HMM PF01938; match to protein family HMM PF02475; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_002336436.1 identified by match to protein family HMM PF01207 YP_002336437.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002336438.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_002336440.1 identified by match to protein family HMM PF07308 YP_002336441.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002336442.1 identified by match to protein family HMM PF04055 YP_002336443.1 identified by glimmer; putative YP_002336444.1 identified by glimmer; putative YP_002336445.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002336446.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_002336447.1 identified by glimmer; putative YP_002336448.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01910 YP_002336449.1 identified by glimmer; putative YP_002336450.1 identified by glimmer; putative YP_002336451.1 identified by match to protein family HMM PF00515; match to protein family HMM PF01381; match to protein family HMM PF07719 YP_002336452.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002336453.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002336454.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550 YP_002336455.1 identified by match to protein family HMM PF07690 YP_002336456.1 identified by match to protein family HMM PF00665 YP_002336457.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01527 YP_002336458.1 identified by match to protein family HMM PF07308 YP_002336459.1 identified by match to protein family HMM PF01863 YP_002336461.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_002336463.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM TIGR00931 YP_002336464.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002336466.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992; match to protein family HMM TIGR03140 YP_002336467.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR03137 YP_002336468.1 related protein from Bacillus subtilis functions as methylribose kinase and functions in salvage pathway YP_002336469.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway YP_002336470.1 catalyzes the formation of glycerone phosphate and (S)-lactaldehyde from L-fuculose 1-phosphate YP_002336473.1 identified by match to protein family HMM PF01032 YP_002336474.1 identified by match to protein family HMM PF01032 YP_002336475.1 identified by match to protein family HMM PF01497 YP_002336476.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002336477.1 identified by glimmer; putative YP_002336478.1 identified by match to protein family HMM TIGR01764 YP_002336482.1 identified by glimmer; putative YP_002336483.1 identified by glimmer; putative YP_002336484.1 identified by match to protein family HMM PF04199 YP_002336487.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002336488.1 identified by match to protein family HMM PF00355; match to protein family HMM PF01266 YP_002336489.1 identified by match to protein family HMM PF00487 YP_002336490.1 identified by match to protein family HMM PF00535; match to protein family HMM PF03142 YP_002336491.1 identified by glimmer; putative YP_002336492.1 identified by match to protein family HMM PF00072 YP_002336493.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002336494.1 identified by match to protein family HMM PF00497 YP_002336495.1 identified by match to protein family HMM PF00005 YP_002336496.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002336497.1 identified by match to protein family HMM PF00128 YP_002336498.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR02003 YP_002336499.1 identified by match to protein family HMM PF03372 YP_002336500.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_002336501.1 decatenates replicating daughter chromosomes YP_002336502.1 identified by match to protein family HMM PF03551 YP_002336503.1 identified by match to protein family HMM PF02687 YP_002336504.1 identified by match to protein family HMM PF00005 YP_002336505.1 identified by match to protein family HMM TIGR01730 YP_002336506.1 identified by glimmer; putative YP_002336507.1 identified by glimmer; putative YP_002336508.1 identified by glimmer; putative YP_002336509.1 identified by match to protein family HMM PF00005 YP_002336510.1 identified by match to protein family HMM PF01944 YP_002336511.1 identified by match to protein family HMM PF01751 YP_002336512.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP YP_002336513.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate YP_002336515.1 functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB YP_002336516.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002336517.1 identified by match to protein family HMM PF01910 YP_002336518.1 identified by match to protein family HMM PF00528 YP_002336519.1 identified by match to protein family HMM PF09084 YP_002336520.1 identified by match to protein family HMM PF00005 YP_002336522.1 identified by match to protein family HMM PF00005 YP_002336523.1 identified by match to protein family HMM PF00041; match to protein family HMM PF00553; match to protein family HMM PF00704 YP_002336524.1 identified by match to protein family HMM PF09350 YP_002336526.1 identified by glimmer; putative YP_002336528.1 identified by match to protein family HMM PF00440; match to protein family HMM PF08360 YP_002336529.1 identified by match to protein family HMM PF07690 YP_002336530.1 identified by match to protein family HMM PF01381 YP_002336532.1 identified by match to protein family HMM PF07690 YP_002336533.1 identified by match to protein family HMM PF01663 YP_002336535.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002336536.1 identified by match to protein family HMM TIGR01167 YP_002336537.1 identified by match to protein family HMM PF00480 YP_002336538.1 identified by match to protein family HMM PF02342 YP_002336539.1 identified by match to protein family HMM PF02342 YP_002336540.1 identified by match to protein family HMM PF02342 YP_002336541.1 identified by match to protein family HMM PF03741 YP_002336543.1 identified by match to protein family HMM PF05816 YP_002336544.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002336545.1 identified by match to protein family HMM PF06569 YP_002336546.1 identified by match to protein family HMM PF01451 YP_002336548.1 identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765 YP_002336549.1 identified by glimmer; putative YP_002336550.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_002336551.1 identified by match to protein family HMM PF00892 YP_002336552.1 identified by match to protein family HMM PF07947 YP_002336554.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002336555.1 identified by glimmer; putative YP_002336556.1 identified by match to protein family HMM PF09335 YP_002336557.1 identified by match to protein family HMM PF00892 YP_002336559.1 identified by match to protein family HMM PF01243 YP_002336560.1 identified by match to protein family HMM PF01699; match to protein family HMM TIGR00378; match to protein family HMM TIGR00846 YP_002336562.1 identified by match to protein family HMM PF04055; match to protein family HMM PF08756 YP_002336564.1 identified by match to protein family HMM PF05681; match to protein family HMM PF05683; match to protein family HMM TIGR00722; match to protein family HMM TIGR00723 YP_002336565.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02884 YP_002336566.1 identified by match to protein family HMM PF00730 YP_002336567.1 identified by match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479 YP_002336568.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability YP_002336569.1 identified by glimmer; putative YP_002336570.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_002336571.1 identified by match to protein family HMM PF00364 YP_002336572.1 identified by match to protein family HMM PF00324 YP_002336573.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_002336574.1 identified by match to protein family HMM PF01381; match to protein family HMM PF06803 YP_002336575.1 identified by match to protein family HMM TIGR02840 YP_002336576.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002336578.1 identified by match to protein family HMM PF00665 YP_002336580.1 catalyzes the formation of glutamate from glutamine YP_002336581.1 identified by glimmer; putative YP_002336582.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01998 YP_002336583.1 identified by match to protein family HMM PF00144 YP_002336584.1 identified by glimmer; putative YP_002336586.1 identified by match to protein family HMM PF00535 YP_002336587.1 identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_002336588.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002336589.1 identified by match to protein family HMM PF00535 YP_002336590.1 identified by match to protein family HMM PF01228; match to protein family HMM PF02901; match to protein family HMM TIGR01255 YP_002336591.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR02493 YP_002336592.1 processive; catalyzes the formation of mono-, di- and tri-glucosyldiacylglycerol by the progressive transfer of glucosyl residues to diacylglycerol; involved in the formation of membrane glycolipids YP_002336595.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_002336596.1 identified by match to protein family HMM PF01370; match to protein family HMM PF08338; match to protein family HMM TIGR01777 YP_002336597.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities YP_002336598.1 identified by match to protein family HMM PF08838 YP_002336599.1 identified by glimmer; putative YP_002336600.1 SASP K; found in the forespore compartment YP_002336602.1 identified by match to protein family HMM PF04307 YP_002336603.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084 YP_002336605.1 identified by match to protein family HMM PF04259; match to protein family HMM TIGR01442 YP_002336608.1 identified by match to protein family HMM PF04167 YP_002336609.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002336610.1 identified by match to protein family HMM PF06081 YP_002336611.1 identified by match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898 YP_002336612.1 converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate YP_002336613.1 identified by match to protein family HMM PF00005 YP_002336614.1 identified by match to protein family HMM PF06182 YP_002336615.1 identified by match to protein family HMM PF06182 YP_002336616.1 identified by match to protein family HMM PF07885 YP_002336617.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002336618.1 identified by match to protein family HMM PF01475 YP_002336620.1 identified by match to protein family HMM PF01709; match to protein family HMM TIGR01033 YP_002336621.1 identified by match to protein family HMM PF00293 YP_002336622.1 identified by match to protein family HMM PF00912 YP_002336623.1 identified by match to protein family HMM PF01323 YP_002336624.1 identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766 YP_002336625.1 identified by match to protein family HMM PF00037; match to protein family HMM PF03130; match to protein family HMM PF08331; match to protein family HMM TIGR00276 YP_002336627.1 identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185 YP_002336628.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002336629.1 identified by match to protein family HMM PF06798; match to protein family HMM PF08298 YP_002336630.1 identified by match to protein family HMM PF04285; match to protein family HMM TIGR02877 YP_002336631.1 identified by match to protein family HMM PF00239; match to protein family HMM PF07508 YP_002336633.1 identified by match to protein family HMM PF06114 YP_002336634.1 identified by match to protein family HMM PF01381 YP_002336635.1 identified by match to protein family HMM PF01381 YP_002336637.1 identified by glimmer; putative YP_002336638.1 identified by glimmer; putative YP_002336639.1 identified by glimmer; putative YP_002336640.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_002336641.1 unwinds double stranded DNA YP_002336642.1 identified by glimmer; putative YP_002336643.1 identified by glimmer; putative YP_002336646.1 identified by match to protein family HMM PF00692; match to protein family HMM TIGR00576 YP_002336649.1 identified by match to protein family HMM PF09643 YP_002336650.1 identified by glimmer; putative YP_002336651.1 identified by glimmer; putative YP_002336652.1 identified by glimmer; putative YP_002336653.1 identified by glimmer; putative YP_002336654.1 identified by glimmer; putative YP_002336655.1 identified by match to protein family HMM TIGR01637 YP_002336656.1 identified by match to protein family HMM PF00589 YP_002336657.1 identified by glimmer; putative YP_002336659.1 identified by glimmer; putative YP_002336660.1 identified by match to protein family HMM PF01844 YP_002336662.1 identified by match to protein family HMM PF03354 YP_002336663.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_002336664.1 identified by match to protein family HMM PF00574 YP_002336667.1 identified by match to protein family HMM TIGR01563 YP_002336670.1 identified by match to protein family HMM TIGR01603 YP_002336673.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002336675.1 identified by match to protein family HMM TIGR01633 YP_002336676.1 identified by match to protein family HMM TIGR01665 YP_002336678.1 identified by match to protein family HMM PF00589 YP_002336680.1 identified by glimmer; putative YP_002336681.1 identified by match to protein family HMM PF01183 YP_002336683.1 identified by match to protein family HMM PF01726 YP_002336684.1 identified by glimmer; putative YP_002336685.1 identified by match to protein family HMM PF05031; match to protein family HMM TIGR01167 YP_002336686.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_002336687.1 identified by match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453 YP_002336688.1 identified by match to protein family HMM PF01957 YP_002336689.1 identified by match to protein family HMM PF01145 YP_002336690.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002336691.1 identified by match to protein family HMM PF02518 YP_002336692.1 identified by match to protein family HMM PF00072 YP_002336693.1 identified by match to protein family HMM PF03600; match to protein family HMM PF03606; match to protein family HMM PF06808; match to protein family HMM TIGR00784 YP_002336694.1 identified by glimmer; putative YP_002336697.1 identified by match to protein family HMM PF00023 YP_002336698.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002336699.1 identified by match to protein family HMM PF04309 YP_002336700.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402 YP_002336701.1 identified by match to protein family HMM PF00528 YP_002336702.1 identified by match to protein family HMM PF00528 YP_002336703.1 identified by match to protein family HMM PF01547 YP_002336704.1 identified by match to protein family HMM PF00149 YP_002336705.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002336706.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002336707.1 identified by glimmer; putative YP_002336710.1 identified by match to protein family HMM PF00892 YP_002336711.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002336712.1 identified by match to protein family HMM PF00583 YP_002336713.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002336714.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002336717.1 identified by match to protein family HMM PF00583 YP_002336718.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth YP_002336719.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_002336720.1 identified by match to protein family HMM PF07849 YP_002336721.1 identified by match to protein family HMM PF03009 YP_002336722.1 identified by glimmer; putative YP_002336723.1 identified by match to protein family HMM PF01262; match to protein family HMM PF01488; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_002336724.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845 YP_002336725.1 identified by match to protein family HMM PF01022 YP_002336726.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525 YP_002336727.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_002336728.1 identified by match to protein family HMM PF00515; match to protein family HMM PF01381; match to protein family HMM PF07719 YP_002336730.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504 YP_002336731.1 identified by match to protein family HMM PF09335 YP_002336733.1 identified by glimmer; putative YP_002336734.1 identified by match to protein family HMM PF04294 YP_002336735.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002336736.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804 YP_002336737.1 identified by match to protein family HMM PF00903 YP_002336738.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_002336739.1 catalyzes the formation of fumarate from aspartate YP_002336740.1 identified by match to protein family HMM PF00665 YP_002336742.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795 YP_002336743.1 identified by match to protein family HMM PF01022 YP_002336744.1 SASP H; spore coat; expressed in forespore compartment YP_002336745.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002336746.1 identified by match to protein family HMM PF01497 YP_002336747.1 identified by match to protein family HMM PF01032 YP_002336748.1 identified by match to protein family HMM PF01032 YP_002336749.1 identified by match to protein family HMM PF00005 YP_002336750.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002336751.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine YP_002336752.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993 YP_002336753.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR00336 YP_002336754.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002336756.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728 YP_002336757.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) YP_002336759.1 identified by glimmer; putative YP_002336760.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002336761.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03222 YP_002336762.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702; match to protein family HMM TIGR02404 YP_002336763.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01992 YP_002336764.1 identified by match to protein family HMM PF00128; match to protein family HMM TIGR02403 YP_002336765.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002336768.1 identified by match to protein family HMM PF03323 YP_002336769.1 identified by match to protein family HMM PF01636 YP_002336770.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002336771.1 identified by match to protein family HMM PF00005 YP_002336772.1 identified by match to protein family HMM PF00497 YP_002336773.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002336774.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002336775.1 identified by match to protein family HMM PF00324 YP_002336776.1 identified by match to protein family HMM PF02566 YP_002336777.1 identified by match to protein family HMM PF01230 YP_002336778.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_002336780.1 identified by match to protein family HMM PF08279 YP_002336781.1 identified by match to protein family HMM PF01872 YP_002336782.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002336783.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002336785.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF01740 YP_002336786.1 identified by match to protein family HMM PF00582 YP_002336787.1 identified by glimmer; putative YP_002336788.1 identified by match to protein family HMM PF00496 YP_002336789.1 identified by match to protein family HMM PF00528 YP_002336790.1 identified by match to protein family HMM PF00528 YP_002336791.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352 YP_002336792.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002336793.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00712; match to protein family HMM TIGR00881 YP_002336794.1 identified by match to protein family HMM PF01047 YP_002336795.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002336796.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002336797.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR02152 YP_002336798.1 cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source YP_002336799.1 identified by match to protein family HMM PF00005 YP_002336800.1 identified by match to protein family HMM PF02653 YP_002336801.1 identified by match to protein family HMM PF00532 YP_002336802.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_002336803.1 identified by match to protein family HMM PF05547; match to protein family HMM TIGR03296 YP_002336804.1 identified by match to protein family HMM PF07690 YP_002336805.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002336806.1 identified by match to protein family HMM PF07885 YP_002336807.1 identified by match to protein family HMM PF00882 YP_002336808.1 identified by match to protein family HMM PF03372; match to protein family HMM TIGR03395 YP_002336810.1 identified by match to protein family HMM PF01565; match to protein family HMM PF04030; match to protein family HMM TIGR01679 YP_002336811.1 identified by match to protein family HMM PF04892 YP_002336812.1 identified by glimmer; putative YP_002336813.1 phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002336814.1 identified by match to protein family HMM PF00015 YP_002336815.1 identified by match to protein family HMM PF06725 YP_002336816.1 identified by match to protein family HMM PF01381 YP_002336818.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_002336820.1 identified by match to protein family HMM PF00854; match to protein family HMM PF07690; match to protein family HMM TIGR00924 YP_002336821.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002336824.1 identified by match to protein family HMM PF00324 YP_002336825.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_002336826.1 identified by match to protein family HMM PF01381 YP_002336827.1 identified by glimmer; putative YP_002336828.1 identified by match to protein family HMM PF00583 YP_002336829.1 identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254 YP_002336830.1 identified by match to protein family HMM PF03626; match to protein family HMM TIGR02901 YP_002336831.1 identified by match to protein family HMM PF00510; match to protein family HMM TIGR02897 YP_002336832.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02882 YP_002336833.1 identified by match to protein family HMM PF02790; match to protein family HMM TIGR01432 YP_002336837.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002336839.1 identified by match to protein family HMM PF00474 YP_002336840.1 identified by match to protein family HMM PF03323 YP_002336841.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002336842.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002336843.1 identified by glimmer; putative YP_002336845.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR00231 YP_002336846.1 identified by match to protein family HMM PF04023 YP_002336847.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR02136 YP_002336848.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_002336849.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_002336850.1 identified by match to protein family HMM PF00873 YP_002336851.1 identified by match to protein family HMM PF00571 YP_002336852.1 identified by glimmer; putative YP_002336853.1 identified by glimmer; putative YP_002336855.1 identified by match to protein family HMM PF01551; match to protein family HMM PF06347; match to protein family HMM PF08239 YP_002336856.1 identified by match to protein family HMM PF03070 YP_002336857.1 identified by match to protein family HMM PF00005 YP_002336858.1 identified by match to protein family HMM PF00528 YP_002336859.1 identified by match to protein family HMM PF09084 YP_002336860.1 regulates the production of extracellular enzymes YP_002336861.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR02352 YP_002336862.1 with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate YP_002336863.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate YP_002336864.1 catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways YP_002336865.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine YP_002336866.1 identified by glimmer; putative YP_002336867.1 identified by glimmer; putative YP_002336868.1 identified by glimmer; putative YP_002336869.1 catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_002336870.1 One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions YP_002336871.1 one of the components of the high-affinity ATP-driven potassium transport (or KDP)system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; the C subunit may be involved in assembly of the KDP complex YP_002336872.1 identified by match to protein family HMM PF00582; match to protein family HMM PF02702 YP_002336873.1 identified by match to protein family HMM PF07690 YP_002336874.1 identified by match to protein family HMM PF01047 YP_002336875.1 identified by match to protein family HMM PF01734 YP_002336877.1 identified by match to protein family HMM PF02687 YP_002336878.1 identified by match to protein family HMM PF02687 YP_002336879.1 identified by match to protein family HMM PF00005 YP_002336880.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002336881.1 identified by glimmer; putative YP_002336882.1 identified by match to protein family HMM PF02653 YP_002336883.1 identified by match to protein family HMM PF00005 YP_002336884.1 identified by match to protein family HMM PF00532 YP_002336885.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_002336886.1 identified by match to protein family HMM PF00106 YP_002336887.1 identified by match to protein family HMM PF03734 YP_002336889.1 identified by match to protein family HMM PF00294 YP_002336890.1 identified by match to protein family HMM PF00251; match to protein family HMM PF08244; match to protein family HMM TIGR01322 YP_002336891.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR01996 YP_002336892.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002336893.1 identified by match to protein family HMM PF07561 YP_002336894.1 identified by match to protein family HMM PF00085 YP_002336895.1 identified by match to protein family HMM PF02600 YP_002336898.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002336899.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002336900.1 identified by match to protein family HMM PF03323 YP_002336902.1 identified by match to protein family HMM PF00881 YP_002336903.1 identified by match to protein family HMM PF04293 YP_002336904.1 identified by glimmer; putative YP_002336905.1 identified by match to protein family HMM PF01935 YP_002336909.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00581; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR03385 YP_002336910.1 identified by match to protein family HMM PF02583 YP_002336911.1 identified by match to protein family HMM PF00581; match to protein family HMM PF01206 YP_002336912.1 identified by match to protein family HMM PF00753 YP_002336913.1 identified by match to protein family HMM PF01206 YP_002336914.1 identified by match to protein family HMM PF01206 YP_002336915.1 identified by match to protein family HMM PF00581 YP_002336917.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002336918.1 identified by match to protein family HMM PF01925 YP_002336919.1 identified by glimmer; putative YP_002336920.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002336921.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02823 YP_002336922.1 identified by match to protein family HMM PF01895; match to protein family HMM PF02690; match to protein family HMM TIGR00704 YP_002336923.1 identified by glimmer; putative YP_002336924.1 identified by match to protein family HMM PF07690 YP_002336925.1 identified by match to protein family HMM PF05913 YP_002336926.1 identified by match to protein family HMM PF00359; match to protein family HMM PF00874; match to protein family HMM PF05043; match to protein family HMM PF08279 YP_002336927.1 identified by match to protein family HMM PF02255 YP_002336928.1 identified by match to protein family HMM PF02302 YP_002336929.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002336930.1 identified by glimmer; putative YP_002336931.1 identified by match to protein family HMM PF05913 YP_002336932.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002336933.1 identified by match to protein family HMM PF06347; match to protein family HMM PF06725; match to protein family HMM PF08239 YP_002336934.1 identified by match to protein family HMM PF02687 YP_002336935.1 identified by match to protein family HMM PF00005 YP_002336936.1 identified by match to protein family HMM TIGR01730 YP_002336937.1 identified by match to protein family HMM PF09529; match to protein family HMM TIGR02206 YP_002336938.1 identified by match to protein family HMM PF00528 YP_002336939.1 identified by match to protein family HMM PF00528 YP_002336940.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002336941.1 identified by match to protein family HMM PF05067 YP_002336946.1 identified by match to protein family HMM PF02735; match to protein family HMM TIGR02772 YP_002336947.1 identified by match to protein family HMM PF06803 YP_002336948.1 identified by match to protein family HMM PF09335 YP_002336949.1 identified by match to protein family HMM PF01609 YP_002336953.1 identified by match to protein family HMM PF00041; match to protein family HMM PF00149 YP_002336955.1 identified by glimmer; putative YP_002336956.1 identified by match to protein family HMM PF00324 YP_002336957.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00932 YP_002336958.1 identified by glimmer; putative YP_002336959.1 identified by match to protein family HMM PF01380; match to protein family HMM PF01418 YP_002336960.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway YP_002336961.1 identified by match to protein family HMM PF00367; match to protein family HMM PF02378 YP_002336962.1 identified by match to protein family HMM PF05913 YP_002336963.1 identified by match to protein family HMM PF07681 YP_002336966.1 identified by match to protein family HMM PF00892; match to protein family HMM PF03151 YP_002336967.1 identified by match to protein family HMM PF01037 YP_002336968.1 catalyzes the formation of N-acetyl-L-glutamate from acetyl-CoA and L-glutamate YP_002336969.1 identified by match to protein family HMM PF00893 YP_002336970.1 identified by match to protein family HMM PF00893 YP_002336971.1 identified by match to protein family HMM PF00440 YP_002336972.1 identified by match to protein family HMM PF00083; match to protein family HMM PF05978; match to protein family HMM PF07690 YP_002336973.1 identified by match to protein family HMM PF01638 YP_002336974.1 identified by match to protein family HMM PF01047 YP_002336975.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_002336976.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002336977.1 identified by match to protein family HMM PF07859 YP_002336978.1 identified by match to protein family HMM PF07859 YP_002336979.1 identified by glimmer; putative YP_002336980.1 identified by match to protein family HMM PF00440 YP_002336981.1 identified by match to protein family HMM PF00067 YP_002336982.1 identified by match to protein family HMM PF00440 YP_002336983.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002336984.1 identified by glimmer; putative YP_002336985.1 identified by match to protein family HMM PF01609 YP_002336986.1 identified by match to protein family HMM PF00440 YP_002336987.1 identified by match to protein family HMM PF04463 YP_002336988.1 identified by match to protein family HMM PF02517 YP_002336989.1 identified by match to protein family HMM PF01906 YP_002336990.1 identified by match to protein family HMM PF00078 YP_002336992.1 identified by glimmer; putative YP_002336993.1 identified by match to protein family HMM PF01638 YP_002336994.1 identified by match to protein family HMM PF07366 YP_002336995.1 identified by match to protein family HMM PF02525 YP_002336996.1 identified by match to protein family HMM PF00496 YP_002336997.1 identified by match to protein family HMM PF07690 YP_002336998.1 identified by glimmer; putative YP_002337000.1 identified by match to protein family HMM PF05975 YP_002337001.1 identified by match to protein family HMM PF00324 YP_002337002.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00067 YP_002337003.1 identified by match to protein family HMM PF00171 YP_002337004.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002337005.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002337006.1 identified by match to protein family HMM PF00497 YP_002337007.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002337008.1 identified by match to protein family HMM PF00005 YP_002337009.1 identified by match to protein family HMM PF00269 YP_002337013.1 identified by match to protein family HMM PF04286 YP_002337014.1 identified by match to protein family HMM PF06133 YP_002337016.1 identified by match to protein family HMM PF08006 YP_002337017.1 catalyzes the formation of 2-acetolactate from pyruvate in stationary phase YP_002337018.1 identified by match to protein family HMM PF03306; match to protein family HMM TIGR01252 YP_002337019.1 responsible for recognizing base lesions in the genome and initiating base excision DNA repair YP_002337020.1 identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR01484 YP_002337021.1 identified by match to protein family HMM PF00395; match to protein family HMM PF01510 YP_002337022.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002337023.1 activates fatty acids by binding to coenzyme A YP_002337025.1 identified by match to protein family HMM PF00078 YP_002337026.1 identified by match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167 YP_002337028.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM PF00955; match to protein family HMM PF01740 YP_002337029.1 identified by glimmer; putative YP_002337031.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; in some organisms, especially gram positive pathogens, have paralogs that have been found to be nonessential but do function in secretion of a subset of exported proteins YP_002337032.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002337033.1 identified by match to protein family HMM PF04230; match to protein family HMM TIGR03609 YP_002337034.1 identified by match to protein family HMM PF00395 YP_002337035.1 identified by match to protein family HMM PF00395; match to protein family HMM PF02368 YP_002337037.1 identified by match to protein family HMM PF03062 YP_002337038.1 identified by match to protein family HMM PF03062 YP_002337041.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002337044.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002337045.1 identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766 YP_002337047.1 identified by glimmer; putative YP_002337048.1 identified by match to protein family HMM PF05343 YP_002337049.1 identified by match to protein family HMM PF00395; match to protein family HMM PF01520 YP_002337050.1 identified by match to protein family HMM PF01170 YP_002337052.1 identified by match to protein family HMM PF05544 YP_002337053.1 catalyzes the formation of L-proline from L-ornithine YP_002337054.1 identified by glimmer; putative YP_002337055.1 identified by glimmer; putative YP_002337058.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002337059.1 identified by match to protein family HMM PF02518 YP_002337060.1 identified by match to protein family HMM PF00072 YP_002337061.1 identified by match to protein family HMM PF03401 YP_002337062.1 identified by glimmer; putative YP_002337063.1 identified by match to protein family HMM PF04471 YP_002337065.1 identified by match to protein family HMM PF02342 YP_002337066.1 identified by match to protein family HMM PF07728 YP_002337069.1 identified by glimmer; putative YP_002337072.1 identified by match to protein family HMM PF01863 YP_002337073.1 identified by glimmer; putative YP_002337074.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002337075.1 identified by glimmer; putative YP_002337076.1 identified by glimmer; putative YP_002337077.1 identified by match to protein family HMM PF00376 YP_002337079.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002337080.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_002337081.1 unwinds double stranded DNA YP_002337082.1 identified by match to protein family HMM PF01978 YP_002337083.1 identified by match to protein family HMM PF01925 YP_002337085.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002337086.1 identified by glimmer; putative YP_002337088.1 identified by match to protein family HMM PF03551 YP_002337089.1 identified by glimmer; putative YP_002337090.1 identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732 YP_002337092.1 identified by match to protein family HMM PF03403 YP_002337093.1 identified by match to protein family HMM PF07336 YP_002337094.1 identified by match to protein family HMM PF04982 YP_002337095.1 identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732 YP_002337096.1 identified by glimmer; putative YP_002337097.1 identified by glimmer; putative YP_002337098.1 identified by match to protein family HMM PF01047 YP_002337099.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_002337102.1 similar to DhaK; in Lactococcus lactis this protein froms a stable complex with DhaS and activates transcription of the dha operon in the presence of dihydroxyacetone YP_002337103.1 identified by match to protein family HMM TIGR02366 YP_002337104.1 in some organisms the DhaK and DhaL subunits are encoded by separate genes; in others they are fused; functions along with DhaM to phosphorylate dihydroxyacetone YP_002337106.1 identified by glimmer; putative YP_002337110.1 identified by glimmer; putative YP_002337111.1 identified by match to protein family HMM PF01966 YP_002337112.1 identified by glimmer; putative YP_002337113.1 identified by glimmer; putative YP_002337114.1 identified by match to protein family HMM PF00395 YP_002337117.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03551 YP_002337119.1 identified by match to protein family HMM PF00395 YP_002337122.1 identified by match to protein family HMM PF00903 YP_002337124.1 identified by match to protein family HMM PF05532 YP_002337125.1 identified by match to protein family HMM PF04226 YP_002337126.1 identified by glimmer; putative YP_002337127.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377 YP_002337128.1 binds to sigma-B preventing the formation of an RNA polymerase holoenzyme YP_002337129.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase YP_002337130.1 identified by match to protein family HMM PF00210 YP_002337131.1 identified by match to protein family HMM PF00072; match to protein family HMM PF07228 YP_002337132.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_002337133.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01590; match to protein family HMM PF02518 YP_002337134.1 identified by glimmer; putative YP_002337135.1 identified by glimmer; putative YP_002337137.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002337138.1 identified by match to protein family HMM PF01906 YP_002337139.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002337140.1 identified by glimmer; putative YP_002337141.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002337142.1 identified by glimmer; putative YP_002337146.1 identified by glimmer; putative YP_002337148.1 identified by match to protein family HMM PF00149 YP_002337150.1 catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates YP_002337151.1 identified by match to protein family HMM PF00440 YP_002337152.1 identified by match to protein family HMM PF07690 YP_002337153.1 identified by match to protein family HMM PF00903 YP_002337154.1 identified by match to protein family HMM PF00903 YP_002337156.1 identified by match to protein family HMM PF00561 YP_002337160.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002337161.1 identified by glimmer; putative YP_002337163.1 identified by match to protein family HMM PF04309 YP_002337164.1 identified by match to protein family HMM PF00230; match to protein family HMM TIGR00861 YP_002337165.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP YP_002337166.1 identified by match to protein family HMM PF01266 YP_002337167.1 identified by match to protein family HMM PF00665 YP_002337172.1 part of sigC operon induced by temperature upshift YP_002337173.1 part of sigC operon that is induced by temperature upshift YP_002337175.1 identified by glimmer; putative YP_002337177.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein YP_002337178.1 identified by glimmer; putative YP_002337179.1 identified by match to protein family HMM PF08963 YP_002337180.1 hpr; ScoC; MarR family; protease production regulatory protein YP_002337181.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002337182.1 identified by match to protein family HMM PF01230 YP_002337183.1 identified by match to protein family HMM PF00005 YP_002337184.1 identified by match to protein family HMM PF05975 YP_002337186.1 identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732 YP_002337187.1 identified by match to protein family HMM PF00440 YP_002337188.1 identified by glimmer; putative YP_002337189.1 identified by match to protein family HMM PF03703 YP_002337190.1 identified by match to protein family HMM PF03703 YP_002337191.1 identified by glimmer; putative YP_002337193.1 identified by match to protein family HMM PF06993 YP_002337195.1 identified by glimmer; putative YP_002337196.1 identified by match to protein family HMM PF03703 YP_002337197.1 identified by match to protein family HMM PF03703 YP_002337198.1 identified by match to protein family HMM PF03992 YP_002337199.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002337200.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III YP_002337201.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_002337202.1 catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX YP_002337203.1 identified by glimmer; putative YP_002337204.1 identified by match to protein family HMM PF03372 YP_002337207.1 identified by match to protein family HMM PF00440 YP_002337208.1 identified by match to protein family HMM PF01061; match to protein family HMM TIGR03061; match to protein family HMM TIGR03062 YP_002337211.1 identified by glimmer; putative YP_002337212.1 identified by glimmer; putative YP_002337214.1 identified by match to protein family HMM PF08279 YP_002337215.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002337217.1 identified by match to protein family HMM PF00753 YP_002337218.1 identified by match to protein family HMM PF03099; match to protein family HMM TIGR00545 YP_002337220.1 activates fatty acids by binding to coenzyme A YP_002337222.1 identified by match to protein family HMM PF00395; match to protein family HMM PF05031 YP_002337223.1 identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643; match to protein family HMM TIGR03696 YP_002337225.1 identified by match to protein family HMM PF05593; match to protein family HMM TIGR01643; match to protein family HMM TIGR03696 YP_002337227.1 identified by glimmer; putative YP_002337229.1 identified by glimmer; putative YP_002337230.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002337231.1 identified by match to protein family HMM TIGR01784 YP_002337232.1 identified by glimmer; putative YP_002337233.1 identified by glimmer; putative YP_002337234.1 identified by match to protein family HMM PF01738 YP_002337235.1 identified by match to protein family HMM PF00149 YP_002337236.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002337237.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002337238.1 identified by match to protein family HMM PF01966 YP_002337240.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_002337241.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_002337242.1 identified by match to protein family HMM PF00903 YP_002337244.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002337245.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002337246.1 identified by match to protein family HMM PF02517 YP_002337248.1 identified by glimmer; putative YP_002337249.1 identified by glimmer; putative YP_002337250.1 identified by match to protein family HMM PF01435 YP_002337251.1 identified by match to protein family HMM PF00892 YP_002337252.1 identified by match to protein family HMM PF00395 YP_002337253.1 identified by glimmer; putative YP_002337254.1 identified by match to protein family HMM PF00395 YP_002337255.1 identified by match to protein family HMM PF00395 YP_002337256.1 Catalyzes the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle YP_002337257.1 identified by match to protein family HMM PF00463; match to protein family HMM TIGR01346 YP_002337258.1 identified by match to protein family HMM PF01636 YP_002337259.1 identified by match to protein family HMM PF00313 YP_002337261.1 identified by glimmer; putative YP_002337262.1 identified by match to protein family HMM PF06338 YP_002337263.1 identified by glimmer; putative YP_002337264.1 identified by match to protein family HMM PF09335 YP_002337265.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002337266.1 identified by match to protein family HMM TIGR02773 YP_002337267.1 identified by match to protein family HMM PF00580; match to protein family HMM TIGR02785 YP_002337275.1 identified by match to protein family HMM PF09388 YP_002337276.1 identified by match to protein family HMM PF01557 YP_002337277.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR01885 YP_002337278.1 identified by match to protein family HMM PF07457 YP_002337280.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_002337281.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic YP_002337282.1 identified by match to protein family HMM PF00199 YP_002337283.1 identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836 YP_002337284.1 identified by match to protein family HMM PF00128 YP_002337285.1 identified by match to protein family HMM PF01381 YP_002337287.1 identified by glimmer; putative YP_002337288.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription YP_002337290.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein YP_002337292.1 identified by match to protein family HMM PF02588 YP_002337295.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002337297.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346 YP_002337302.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs YP_002337303.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP YP_002337306.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002337307.1 identified by glimmer; putative YP_002337308.1 identified by match to protein family HMM PF00496 YP_002337309.1 identified by match to protein family HMM PF00528 YP_002337310.1 identified by match to protein family HMM PF00528 YP_002337311.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727 YP_002337312.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08352 YP_002337313.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002337314.1 identified by match to protein family HMM PF00496 YP_002337315.1 identified by glimmer; putative YP_002337317.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress YP_002337318.1 identified by match to protein family HMM PF03741 YP_002337319.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence YP_002337320.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol) YP_002337321.1 identified by match to protein family HMM PF06054 YP_002337322.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181 YP_002337325.1 identified by match to protein family HMM PF01152 YP_002337326.1 identified by match to protein family HMM PF01928 YP_002337328.1 identified by match to protein family HMM PF04607 YP_002337329.1 catalyzes the phosphorylation of NAD to NADP YP_002337330.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_002337331.1 identified by match to protein family HMM PF05658 YP_002337332.1 asymmetrical; catalyzes the formation of NTP and NMP from P(1),P(4)-bis(5'-nucleosyl) tetraphosphate; acts on bis(5'-guanosyl) tetraphosphate, bis(5'-xanthosyl)-tetraphosphate, on bis(5'-adenosyl)-tetraphosphate, and bis(5'-uridyl)-tetraphosphate YP_002337333.1 identified by match to protein family HMM PF01098 YP_002337334.1 identified by match to protein family HMM PF00535 YP_002337335.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002337336.1 identified by match to protein family HMM PF05711 YP_002337338.1 identified by glimmer; putative YP_002337339.1 identified by match to protein family HMM PF00535 YP_002337340.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002337341.1 identified by glimmer; putative YP_002337343.1 identified by match to protein family HMM PF00483 YP_002337344.1 identified by match to protein family HMM PF00908; match to protein family HMM TIGR01221 YP_002337345.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181 YP_002337346.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01214 YP_002337347.1 Catalyzes a key regulatory step in fatty acid biosynthesis YP_002337350.1 identified by match to protein family HMM PF07098 YP_002337351.1 identified by glimmer; putative YP_002337352.1 identified by glimmer; putative YP_002337354.1 identified by match to protein family HMM PF00580 YP_002337355.1 identified by match to protein family HMM PF00583 YP_002337356.1 similar to 2'-5' RNA ligase YP_002337357.1 identified by match to protein family HMM PF00756 YP_002337358.1 identified by match to protein family HMM PF00892 YP_002337359.1 identified by match to protein family HMM PF06713 YP_002337361.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121 YP_002337362.1 identified by glimmer; putative YP_002337363.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine YP_002337364.1 TrpG; with TrpE catalyzes the formation of anthranilate and glutamate from chorismate and glutamine; TrpG provides the glutamine amidotransferase activity YP_002337365.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002337366.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water YP_002337367.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis YP_002337368.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate YP_002337369.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis YP_002337373.1 identified by match to protein family HMM PF00085 YP_002337375.1 identified by glimmer; putative YP_002337377.1 identified by glimmer; putative YP_002337378.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002337380.1 identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992 YP_002337381.1 identified by match to protein family HMM PF00583 YP_002337382.1 identified by glimmer; putative YP_002337383.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002337384.1 identified by match to protein family HMM TIGR03605 YP_002337385.1 identified by match to protein family HMM PF02624; match to protein family HMM TIGR03604 YP_002337386.1 identified by glimmer; putative YP_002337387.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA YP_002337388.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide YP_002337389.1 identified by match to protein family HMM PF01381 YP_002337391.1 identified by glimmer; putative YP_002337396.1 identified by glimmer; putative YP_002337397.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002337398.1 identified by glimmer; putative YP_002337399.1 identified by match to protein family HMM PF00768 YP_002337400.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228 YP_002337404.1 identified by match to protein family HMM PF01381; match to protein family HMM PF08671 YP_002337405.1 identified by match to protein family HMM PF08671 YP_002337406.1 identified by match to protein family HMM PF05547; match to protein family HMM TIGR03296 YP_002337407.1 identified by match to protein family HMM PF00171 YP_002337408.1 identified by match to protein family HMM PF00005; match to protein family HMM PF08402; match to protein family HMM TIGR01187 YP_002337409.1 identified by match to protein family HMM PF00528 YP_002337410.1 identified by match to protein family HMM PF00528 YP_002337411.1 identified by match to protein family HMM PF01547 YP_002337412.1 identified by match to protein family HMM PF01569 YP_002337415.1 identified by match to protein family HMM PF00849; match to protein family HMM TIGR00005 YP_002337416.1 identified by match to protein family HMM PF07853 YP_002337417.1 identified by match to protein family HMM PF00188; match to protein family HMM TIGR02909 YP_002337418.1 identified by match to protein family HMM PF02754 YP_002337419.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913; match to protein family HMM TIGR00387 YP_002337420.1 identified by match to protein family HMM PF05651 YP_002337422.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002337423.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002337424.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002337425.1 identified by match to protein family HMM PF02754 YP_002337426.1 identified by match to protein family HMM PF02589; match to protein family HMM TIGR00273 YP_002337427.1 identified by match to protein family HMM PF02589 YP_002337428.1 identified by match to protein family HMM PF01478; match to protein family HMM PF06750 YP_002337430.1 identified by match to protein family HMM PF01226 YP_002337431.1 identified by match to protein family HMM PF03741 YP_002337432.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933 YP_002337433.1 identified by match to protein family HMM PF00269 YP_002337434.1 identified by match to protein family HMM PF01575 YP_002337435.1 identified by match to protein family HMM PF09602; match to protein family HMM TIGR02131 YP_002337436.1 identified by match to protein family HMM PF03551; match to protein family HMM TIGR02719 YP_002337437.1 identified by match to protein family HMM TIGR02132 YP_002337438.1 catalyzes the formation of 3-hydroxybutyryl-CoA from acetoacetyl-CoA in polyhydroxyalkanoate synthesis YP_002337439.1 identified by match to protein family HMM PF00561; match to protein family HMM TIGR01836 YP_002337440.1 identified by match to protein family HMM PF01266 YP_002337441.1 identified by match to protein family HMM PF02386 YP_002337442.1 identified by glimmer; putative YP_002337444.1 identified by match to protein family HMM PF01547; match to protein family HMM TIGR03261 YP_002337446.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002337447.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00528; match to protein family HMM TIGR03262 YP_002337448.1 catalyzes the degradation of phosphonoacetaldehyde to acetaldehyde and phosphate YP_002337449.1 catalyzes the formation of phosphonoacetaldehyde from 2-aminoethylphosphonate and pyruvate YP_002337450.1 identified by match to protein family HMM PF03435 YP_002337451.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002337452.1 identified by glimmer; putative YP_002337453.1 identified by match to protein family HMM PF00395; match to protein family HMM PF00560; match to protein family HMM PF05031 YP_002337454.1 identified by match to protein family HMM PF00596 YP_002337455.1 identified by match to protein family HMM PF00571 YP_002337456.1 identified by match to protein family HMM PF04748 YP_002337457.1 identified by match to protein family HMM PF09388 YP_002337458.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002337459.1 identified by match to protein family HMM PF01047 YP_002337460.1 identified by match to protein family HMM PF01432; match to protein family HMM TIGR02289 YP_002337462.1 identified by glimmer; putative YP_002337463.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002337464.1 identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364 YP_002337465.1 identified by match to protein family HMM PF01242; match to protein family HMM TIGR03367 YP_002337466.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR03365 YP_002337467.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis YP_002337469.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002337470.1 identified by glimmer; putative YP_002337472.1 identified by match to protein family HMM PF00583 YP_002337474.1 identified by glimmer; putative YP_002337475.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF YP_002337476.1 identified by match to protein family HMM PF00317; match to protein family HMM PF02867 YP_002337477.1 identified by match to protein family HMM PF02867 YP_002337478.1 identified by match to protein family HMM PF00268 YP_002337480.1 identified by match to protein family HMM PF00392 YP_002337481.1 identified by match to protein family HMM PF00005 YP_002337483.1 identified by match to protein family HMM PF00005 YP_002337485.1 identified by match to protein family HMM PF02517 YP_002337486.1 identified by glimmer; putative YP_002337487.1 identified by match to protein family HMM PF01037 YP_002337489.1 identified by match to protein family HMM PF00857 YP_002337491.1 identified by match to protein family HMM PF02016 YP_002337492.1 identified by match to protein family HMM PF01180; match to protein family HMM PF03060 YP_002337493.1 identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918 YP_002337494.1 D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid YP_002337495.1 identified by match to protein family HMM PF03062 YP_002337496.1 transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid YP_002337497.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002337498.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002337499.1 identified by glimmer; putative YP_002337500.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_002337501.1 identified by glimmer; putative YP_002337502.1 identified by glimmer; putative YP_002337503.1 identified by match to protein family HMM PF01636 YP_002337505.1 identified by glimmer; putative YP_002337506.1 identified by glimmer; putative YP_002337507.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones YP_002337508.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002337510.1 identified by glimmer; putative YP_002337511.1 identified by match to protein family HMM PF01047 YP_002337512.1 identified by glimmer; putative YP_002337513.1 identified by match to protein family HMM PF00375 YP_002337514.1 identified by match to protein family HMM PF02386; match to protein family HMM TIGR00933 YP_002337516.1 identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874 YP_002337517.1 identified by glimmer; putative YP_002337518.1 identified by match to protein family HMM PF03698 YP_002337519.1 identified by glimmer; putative YP_002337520.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002337521.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002337522.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_002337523.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit YP_002337524.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_002337525.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis YP_002337526.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis YP_002337527.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate YP_002337528.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D YP_002337529.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine YP_002337530.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ YP_002337531.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer YP_002337532.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis YP_002337533.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide YP_002337534.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide YP_002337535.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase YP_002337536.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers YP_002337537.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis YP_002337538.1 catalyzes the formation of L-histidinol from L-histidinol phosphate YP_002337539.1 identified by glimmer; putative YP_002337540.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002337541.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473 YP_002337542.1 identified by match to protein family HMM PF00884 YP_002337544.1 identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048 YP_002337546.1 identified by match to protein family HMM PF01507; match to protein family HMM TIGR00434; match to protein family HMM TIGR02055 YP_002337547.1 ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms YP_002337548.1 identified by match to protein family HMM PF01583; match to protein family HMM TIGR00455 YP_002337549.1 identified by match to protein family HMM PF01077; match to protein family HMM PF03460 YP_002337550.1 identified by glimmer; putative YP_002337551.1 catalyzes 2 sequential methylations, the formation of precorrin-1 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and uroporphyrin III, and the formation of precorrin-2 and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and precorrin-1 YP_002337552.1 identified by match to protein family HMM PF01903 YP_002337553.1 catalyzes the formation of siroheme from precorrin-2 YP_002337554.1 identified by match to protein family HMM PF00209 YP_002337556.1 identified by match to protein family HMM PF01551 YP_002337557.1 identified by match to protein family HMM PF00375 YP_002337558.1 identified by match to protein family HMM PF04167 YP_002337559.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03600 YP_002337561.1 identified by match to protein family HMM PF04012 YP_002337563.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002337564.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281 YP_002337565.1 identified by glimmer; putative YP_002337566.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002337568.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002337570.1 identified by glimmer; putative YP_002337571.1 identified by match to protein family HMM PF02163 YP_002337573.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine YP_002337574.1 identified by match to protein family HMM PF00027 YP_002337575.1 identified by glimmer; putative YP_002337576.1 identified by match to protein family HMM PF01925 YP_002337577.1 identified by match to protein family HMM PF01384 YP_002337578.1 identified by match to protein family HMM PF01865 YP_002337579.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002337581.1 identified by match to protein family HMM PF01391 YP_002337582.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_002337583.1 identified by match to protein family HMM PF01904 YP_002337584.1 identified by glimmer; putative YP_002337585.1 identified by match to protein family HMM PF00589 YP_002337586.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002337587.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate YP_002337589.1 identified by match to protein family HMM PF03706; match to protein family HMM PF04329; match to protein family HMM PF04330; match to protein family HMM PF04331 YP_002337590.1 identified by glimmer; putative YP_002337592.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_002337593.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943 YP_002337594.1 identified by match to protein family HMM PF07670 YP_002337595.1 identified by match to protein family HMM PF07670 YP_002337596.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002337597.1 catalyzes the reduction of the disulfide bonds in the heme binding site of apocytochrome c YP_002337598.1 identified by match to protein family HMM PF05140 YP_002337599.1 identified by match to protein family HMM PF01578; match to protein family HMM TIGR03144 YP_002337600.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002337601.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002337602.1 identified by match to protein family HMM PF01923; match to protein family HMM TIGR00636 YP_002337603.1 identified by match to protein family HMM PF01476; match to protein family HMM PF01551 YP_002337604.1 identified by glimmer; putative YP_002337608.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614 YP_002337609.1 identified by match to protein family HMM PF02517 YP_002337610.1 identified by match to protein family HMM PF01476 YP_002337611.1 identified by match to protein family HMM PF00149 YP_002337612.1 identified by match to protein family HMM PF00376 YP_002337613.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence YP_002337614.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812 YP_002337615.1 identified by glimmer; putative YP_002337616.1 identified by glimmer; putative YP_002337617.1 identified by match to protein family HMM PF01510 YP_002337618.1 identified by match to protein family HMM PF00070; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002337619.1 identified by match to protein family HMM PF00710 YP_002337620.1 identified by glimmer; putative YP_002337621.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP YP_002337623.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins YP_002337624.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate YP_002337625.1 identified by glimmer; putative YP_002337629.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains YP_002337630.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate YP_002337634.1 identified by match to protein family HMM PF09547; match to protein family HMM TIGR02836 YP_002337635.1 identified by match to protein family HMM PF00216 YP_002337636.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer YP_002337637.1 identified by match to protein family HMM PF07307 YP_002337638.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone YP_002337639.1 identified by match to protein family HMM PF00348; match to protein family HMM TIGR02748 YP_002337640.1 catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate YP_002337641.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002337642.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis YP_002337643.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_002337644.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720 YP_002337645.1 identified by match to protein family HMM PF08858; match to protein family HMM PF08864 YP_002337647.1 identified by match to protein family HMM PF00355 YP_002337648.1 electron transport protein YP_002337649.1 identified by match to protein family HMM PF00034 YP_002337651.1 identified by match to protein family HMM PF00665 YP_002337652.1 identified by glimmer; putative YP_002337653.1 identified by match to protein family HMM PF07187 YP_002337654.1 identified by match to protein family HMM PF07314; match to protein family HMM TIGR01906 YP_002337655.1 identified by match to protein family HMM PF09577; match to protein family HMM TIGR02878 YP_002337656.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002337657.1 identified by match to protein family HMM PF04298 YP_002337658.1 identified by match to protein family HMM PF03167 YP_002337659.1 identified by match to protein family HMM PF02588 YP_002337660.1 identified by match to protein family HMM PF03819 YP_002337661.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis YP_002337662.1 catalyzes the formation of methylglyoxal from glycerone phosphate YP_002337663.1 identified by match to protein family HMM PF02585 YP_002337664.1 identified by match to protein family HMM PF00534 YP_002337665.1 catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity YP_002337666.1 identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM PF08279; match to protein family HMM TIGR00121; match to protein family HMM TIGR00122 YP_002337668.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate YP_002337669.1 catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine YP_002337670.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5) YP_002337671.1 unwinds DNA YP_002337673.1 identified by match to protein family HMM PF03413 YP_002337674.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002337675.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_002337676.1 identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083 YP_002337678.1 identified by match to protein family HMM PF00041; match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002337679.1 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC YP_002337680.1 identified by glimmer; putative YP_002337682.1 identified by glimmer; putative YP_002337683.1 identified by glimmer; putative YP_002337684.1 identified by match to protein family HMM PF08807 YP_002337688.1 identified by match to protein family HMM PF06908 YP_002337689.1 identified by match to protein family HMM PF05103; match to protein family HMM TIGR03544 YP_002337690.1 identified by match to protein family HMM PF01170; match to protein family HMM PF02926 YP_002337691.1 identified by glimmer; putative YP_002337693.1 identified by match to protein family HMM PF02074 YP_002337694.1 identified by match to protein family HMM PF00583 YP_002337695.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn YP_002337696.1 identified by glimmer; putative YP_002337697.1 Catalyzes the transfer of the phosphoribosyl moiety from 5-phospho--D-ribosyl-1-pyrophosphate (PRib-PP) to the 6-oxo-guanine and -xanthine YP_002337698.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916; match to protein family HMM TIGR00801; match to protein family HMM TIGR03173 YP_002337699.1 identified by match to protein family HMM PF04171; match to protein family HMM PF04235 YP_002337700.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002337701.1 identified by match to protein family HMM PF00350; match to protein family HMM PF01926 YP_002337702.1 identified by glimmer; putative YP_002337703.1 identified by match to protein family HMM PF00583 YP_002337705.1 identified by match to protein family HMM PF00581 YP_002337708.1 identified by match to protein family HMM PF03738 YP_002337709.1 identified by match to protein family HMM PF03994 YP_002337711.1 identified by match to protein family HMM PF01367; match to protein family HMM PF02739 YP_002337715.1 identified by glimmer; putative YP_002337716.1 identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451 YP_002337717.1 identified by match to protein family HMM PF00583 YP_002337718.1 identified by match to protein family HMM PF00857 YP_002337719.1 identified by glimmer; putative YP_002337720.1 identified by match to protein family HMM PF00892 YP_002337721.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_002337722.1 identified by match to protein family HMM PF01263 YP_002337723.1 identified by match to protein family HMM PF06177 YP_002337727.1 identified by match to protein family HMM PF00313 YP_002337728.1 identified by match to protein family HMM PF08892 YP_002337729.1 identified by match to protein family HMM PF01810 YP_002337730.1 identified by glimmer; putative YP_002337731.1 identified by match to protein family HMM PF04116 YP_002337732.1 identified by match to protein family HMM PF04341 YP_002337733.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813 YP_002337734.1 identified by match to protein family HMM PF00202 YP_002337735.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative YP_002337736.1 identified by match to protein family HMM PF00999; match to protein family HMM TIGR00932 YP_002337737.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_002337738.1 identified by match to protein family HMM PF00376 YP_002337739.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002337740.1 identified by match to protein family HMM PF00665 YP_002337742.1 identified by match to protein family HMM PF04239 YP_002337743.1 identified by glimmer; putative YP_002337744.1 identified by match to protein family HMM PF02698 YP_002337746.1 identified by match to protein family HMM PF00881 YP_002337747.1 identified by match to protein family HMM PF01965 YP_002337748.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_002337750.1 identified by match to protein family HMM PF01925 YP_002337751.1 identified by match to protein family HMM PF07690 YP_002337752.1 identified by match to protein family HMM PF01022 YP_002337753.1 identified by match to protein family HMM PF07690 YP_002337754.1 identified by match to protein family HMM PF00903 YP_002337755.1 identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732 YP_002337756.1 identified by match to protein family HMM PF09388 YP_002337757.1 identified by match to protein family HMM PF01423; match to protein family HMM TIGR02383 YP_002337758.1 identified by match to protein family HMM PF01966 YP_002337759.1 Homolog of MotA, appears to be involved in motility on surfaces and under different ionic conditions. With MotS (a MotB homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. YP_002337760.1 Homolog to MotB, appears to be involved in motility on surfaces and under specific ionic conditions. With MotP (a MotA homolog) forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_002337761.1 identified by match to protein family HMM PF00072 YP_002337762.1 identified by match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895; match to protein family HMM PF07194 YP_002337763.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002337764.1 identified by glimmer; putative YP_002337765.1 identified by glimmer; putative YP_002337766.1 identified by match to protein family HMM PF01739; match to protein family HMM PF03705 YP_002337770.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook YP_002337771.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook YP_002337772.1 involved in flagellin assembly YP_002337775.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod YP_002337776.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod YP_002337777.1 forms a junction between the M-ring and FlgB during flagella biosynthesis YP_002337778.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod YP_002337779.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002337780.1 binds to and inhibits the function of flagella specific ATPase FliI YP_002337781.1 involved in type III protein export during flagellum assembly YP_002337784.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod YP_002337785.1 the hook connects flagellar basal body to the flagellar filament YP_002337788.1 identified by match to protein family HMM PF00072; match to protein family HMM PF01584 YP_002337790.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_002337791.1 identified by match to protein family HMM PF00669; match to protein family HMM PF00700 YP_002337792.1 identified by match to protein family HMM PF01464 YP_002337793.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002337794.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation YP_002337795.1 One of three proteins involved in switching the direction of the flagellar rotation YP_002337797.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus YP_002337798.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus YP_002337799.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus YP_002337800.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export YP_002337801.1 membrane protein involved in the flagellar export apparatus YP_002337802.1 positive regulator of class III flagellar genes YP_002337803.1 makes up the distal portion of the flagellar basal body rod YP_002337804.1 identified by match to protein family HMM PF07973 YP_002337805.1 identified by match to protein family HMM PF01978 YP_002337806.1 identified by match to protein family HMM PF03591 YP_002337807.1 identified by match to protein family HMM PF05437 YP_002337808.1 identified by glimmer; putative YP_002337809.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002337810.1 identified by match to protein family HMM PF01738 YP_002337812.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR01451 YP_002337813.1 identified by match to protein family HMM PF05738; match to protein family HMM TIGR01167 YP_002337814.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_002337815.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_002337816.1 identified by match to protein family HMM PF08141; match to protein family HMM TIGR02861 YP_002337817.1 identified by match to protein family HMM PF01381 YP_002337818.1 identified by match to protein family HMM PF07690 YP_002337820.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002337821.1 identified by match to protein family HMM PF00005 YP_002337822.1 identified by match to protein family HMM PF01547 YP_002337823.1 identified by match to protein family HMM PF00528 YP_002337824.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521 YP_002337827.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002337828.1 identified by glimmer; putative YP_002337829.1 identified by match to protein family HMM PF00190 YP_002337832.1 identified by match to protein family HMM PF00300 YP_002337833.1 identified by glimmer; putative YP_002337834.1 identified by match to protein family HMM PF00561 YP_002337836.1 identified by match to protein family HMM PF01047 YP_002337838.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_002337839.1 identified by match to protein family HMM PF00078 YP_002337841.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_002337843.1 identified by match to protein family HMM PF02012 YP_002337844.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002337845.1 identified by glimmer; putative YP_002337846.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07729 YP_002337847.1 identified by match to protein family HMM PF00892 YP_002337849.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM TIGR00931 YP_002337850.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle YP_002337851.1 identified by glimmer; putative YP_002337852.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002337854.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002337855.1 identified by match to protein family HMM PF03575 YP_002337856.1 identified by glimmer; putative YP_002337857.1 identified by match to protein family HMM PF03965 YP_002337858.1 identified by match to protein family HMM PF01435; match to protein family HMM PF05569 YP_002337859.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002337861.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002337862.1 catalyzes the formation of pyruvate from serine YP_002337863.1 identified by match to protein family HMM PF04286 YP_002337866.1 identified by glimmer; putative YP_002337867.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: in B. thuringiensis this protein is involved in beta-exotoxin I production YP_002337868.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_002337869.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002337870.1 identified by match to protein family HMM PF00005 YP_002337871.1 identified by match to protein family HMM PF01061 YP_002337872.1 identified by match to protein family HMM PF01061 YP_002337873.1 identified by match to protein family HMM PF00614 YP_002337874.1 Catalyzes the phosphorylation of UMP to UDP YP_002337875.1 identified by match to protein family HMM PF00375 YP_002337876.1 catalyzes the formation of fumarate from aspartate YP_002337877.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate YP_002337878.1 identified by match to protein family HMM PF02518 YP_002337879.1 identified by match to protein family HMM PF00072; match to protein family HMM PF08664 YP_002337880.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; match to protein family HMM PF08455 YP_002337881.1 identified by glimmer; putative YP_002337882.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002337883.1 catalyzes the formation of asparagine from aspartate and ammonia YP_002337885.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002337886.1 identified by match to protein family HMM PF00903 YP_002337887.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation. YP_002337891.1 identified by match to protein family HMM PF00293 YP_002337892.1 identified by match to protein family HMM PF00395; match to protein family HMM PF01520 YP_002337893.1 identified by match to protein family HMM PF00395; match to protein family HMM PF01832 YP_002337894.1 identified by match to protein family HMM PF07690 YP_002337895.1 identified by glimmer; putative YP_002337897.1 identified by glimmer; putative YP_002337898.1 identified by match to protein family HMM PF02554 YP_002337899.1 identified by match to protein family HMM PF03976 YP_002337900.1 identified by match to protein family HMM PF03551 YP_002337901.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002337902.1 identified by match to protein family HMM PF07690 YP_002337903.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; in Pseudomonas this protein is involved in quinolone signal biosynthesis YP_002337905.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR03156 YP_002337906.1 identified by match to protein family HMM PF00496 YP_002337907.1 identified by match to protein family HMM PF07690 YP_002337908.1 identified by match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01139 YP_002337909.1 identified by match to protein family HMM PF00583 YP_002337911.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002337912.1 identified by match to protein family HMM PF00209 YP_002337913.1 identified by match to protein family HMM PF01522 YP_002337915.1 identified by match to protein family HMM PF04239 YP_002337916.1 identified by match to protein family HMM PF07299 YP_002337917.1 identified by glimmer; putative YP_002337918.1 identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401 YP_002337919.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids YP_002337920.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit YP_002337921.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, this subunit subunit is required for full activity and valine sensitivity; also known as acetolactate synthase small subunit YP_002337922.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis YP_002337923.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis YP_002337924.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic YP_002337925.1 identified by match to protein family HMM PF09587 YP_002337926.1 identified by match to protein family HMM PF04474 YP_002337928.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002337929.1 identified by match to protein family HMM PF02900 YP_002337930.1 identified by match to protein family HMM PF00561 YP_002337931.1 identified by match to protein family HMM PF04397 YP_002337932.1 identified by match to protein family HMM PF02550; match to protein family HMM TIGR03458 YP_002337933.1 identified by match to protein family HMM PF00583 YP_002337935.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969 YP_002337937.1 identified by match to protein family HMM PF00496 YP_002337938.1 identified by match to protein family HMM PF00583 YP_002337939.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002337940.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002337941.1 identified by match to protein family HMM PF01551 YP_002337942.1 identified by match to protein family HMM PF01566; match to protein family HMM TIGR01197 YP_002337943.1 identified by match to protein family HMM PF00581 YP_002337944.1 identified by glimmer; putative YP_002337945.1 identified by match to protein family HMM PF02558; match to protein family HMM PF08546; match to protein family HMM TIGR00745 YP_002337948.1 identified by match to protein family HMM PF05791 YP_002337949.1 identified by match to protein family HMM PF05791 YP_002337950.1 identified by match to protein family HMM PF05791 YP_002337953.1 identified by glimmer; putative YP_002337954.1 identified by match to protein family HMM PF04198 YP_002337955.1 catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate YP_002337956.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804 YP_002337957.1 Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway YP_002337958.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_002337959.1 identified by match to protein family HMM PF07301 YP_002337960.1 identified by match to protein family HMM PF05979 YP_002337961.1 identified by match to protein family HMM PF00557; match to protein family HMM PF05195 YP_002337962.1 identified by match to protein family HMM PF00805 YP_002337964.1 decatenates replicating daughter chromosomes YP_002337966.1 identified by match to protein family HMM PF01758 YP_002337969.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002337970.1 identified by match to protein family HMM PF00903 YP_002337971.1 identified by match to protein family HMM PF04234; match to protein family HMM PF05425 YP_002337972.1 identified by match to protein family HMM PF07987 YP_002337973.1 identified by match to protein family HMM PF00892 YP_002337974.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002337975.1 identified by match to protein family HMM PF02082 YP_002337976.1 identified by match to protein family HMM PF01323 YP_002337977.1 identified by match to protein family HMM PF00881 YP_002337979.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_002337980.1 identified by match to protein family HMM PF01594 YP_002337981.1 Converts (S)-lactate and NAD(+) to pyruvate and NADH YP_002337982.1 identified by match to protein family HMM PF01593 YP_002337983.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_002337984.1 identified by match to protein family HMM PF01094 YP_002337985.1 identified by match to protein family HMM PF00005 YP_002337986.1 identified by match to protein family HMM PF00005 YP_002337987.1 identified by match to protein family HMM PF02653 YP_002337988.1 identified by match to protein family HMM PF02653 YP_002337989.1 identified by match to protein family HMM PF00126 YP_002337992.1 identified by match to protein family HMM PF02627 YP_002337993.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03551 YP_002337994.1 identified by match to protein family HMM PF00296 YP_002337995.1 identified by match to protein family HMM PF01654 YP_002337996.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_002337997.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02857 YP_002337998.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02868 YP_002338002.1 identified by match to protein family HMM PF01041 YP_002338003.1 identified by match to protein family HMM PF00132 YP_002338004.1 identified by glimmer; putative YP_002338008.1 identified by match to protein family HMM PF02016 YP_002338009.1 identified by match to protein family HMM PF00768 YP_002338010.1 identified by match to protein family HMM PF00881 YP_002338011.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338012.1 identified by match to protein family HMM PF00877; match to protein family HMM PF06347; match to protein family HMM PF08239 YP_002338013.1 identified by match to protein family HMM PF00561 YP_002338014.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002338015.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002338016.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002338017.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002338018.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002338019.1 identified by match to protein family HMM PF01596 YP_002338020.1 identified by match to protein family HMM PF04439 YP_002338021.1 identified by match to protein family HMM PF01522 YP_002338024.1 identified by match to protein family HMM PF01243 YP_002338025.1 identified by glimmer; putative YP_002338026.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002338027.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine YP_002338028.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate YP_002338031.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002338032.1 identified by match to protein family HMM PF02518 YP_002338033.1 identified by match to protein family HMM PF01522 YP_002338035.1 identified by match to protein family HMM PF02308 YP_002338036.1 identified by match to protein family HMM PF00583 YP_002338037.1 identified by match to protein family HMM PF00269 YP_002338038.1 identified by match to protein family HMM PF07690 YP_002338039.1 identified by match to protein family HMM PF01810 YP_002338040.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002338042.1 identified by match to protein family HMM PF01734 YP_002338043.1 identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732 YP_002338044.1 identified by match to protein family HMM PF09234 YP_002338046.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002338047.1 identified by match to protein family HMM PF00293 YP_002338048.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers YP_002338049.1 identified by match to protein family HMM PF02687 YP_002338050.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_002338051.1 identified by match to protein family HMM PF00082 YP_002338052.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402 YP_002338054.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02311 YP_002338055.1 identified by match to protein family HMM PF01547 YP_002338056.1 identified by match to protein family HMM PF00528 YP_002338057.1 identified by match to protein family HMM PF00528 YP_002338058.1 identified by match to protein family HMM TIGR02336 YP_002338059.1 identified by glimmer; putative YP_002338060.1 identified by match to protein family HMM PF00370; match to protein family HMM PF00480 YP_002338061.1 identified by match to protein family HMM PF01380 YP_002338062.1 identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221 YP_002338063.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_002338064.1 identified by match to protein family HMM PF01791; match to protein family HMM TIGR01232 YP_002338067.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism YP_002338068.1 identified by match to protein family HMM PF01022 YP_002338069.1 identified by match to protein family HMM PF00248 YP_002338070.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002338074.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_002338075.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002338076.1 identified by glimmer; putative YP_002338077.1 identified by glimmer; putative YP_002338079.1 identified by match to protein family HMM PF00210 YP_002338080.1 identified by glimmer; putative YP_002338081.1 identified by glimmer; putative YP_002338082.1 identified by match to protein family HMM PF00296; match to protein family HMM TIGR03558 YP_002338083.1 identified by glimmer; putative YP_002338084.1 identified by match to protein family HMM PF01593 YP_002338085.1 identified by match to protein family HMM PF00583 YP_002338086.1 identified by match to protein family HMM PF00248 YP_002338087.1 identified by match to protein family HMM PF02492; match to protein family HMM PF07683 YP_002338088.1 identified by match to protein family HMM PF00583 YP_002338089.1 identified by match to protein family HMM PF01297 YP_002338090.1 identified by glimmer; putative YP_002338091.1 identified by match to protein family HMM PF01370 YP_002338092.1 catalyzes the reduction of alpha, beta-unsaturated aldehydes and ketones; reduces the nitro group nitroester and nitroaromatic compounds YP_002338093.1 identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589 YP_002338094.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338095.1 identified by match to protein family HMM PF00496 YP_002338096.1 catalyzes resistance to fosfomycin by the addition of a thiol cofactor YP_002338098.1 identified by match to protein family HMM PF00300 YP_002338099.1 identified by glimmer; putative YP_002338100.1 identified by match to protein family HMM PF08757 YP_002338101.1 identified by match to protein family HMM PF00293 YP_002338102.1 identified by match to protein family HMM PF09335 YP_002338103.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002338104.1 identified by match to protein family HMM PF01544 YP_002338105.1 identified by match to protein family HMM PF03773 YP_002338106.1 identified by match to protein family HMM PF09323 YP_002338107.1 identified by match to protein family HMM PF03061 YP_002338108.1 identified by match to protein family HMM PF00614 YP_002338109.1 identified by match to protein family HMM PF07875 YP_002338111.1 identified by match to protein family HMM PF02254 YP_002338112.1 identified by match to protein family HMM PF04306 YP_002338113.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_002338115.1 identified by match to protein family HMM PF00571 YP_002338116.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002338117.1 identified by match to protein family HMM PF01588; match to protein family HMM TIGR02222 YP_002338118.1 identified by match to protein family HMM PF07609 YP_002338119.1 identified by glimmer; putative YP_002338120.1 identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867 YP_002338121.1 identified by match to protein family HMM PF00583 YP_002338122.1 identified by match to protein family HMM PF02557 YP_002338123.1 identified by match to protein family HMM PF00293 YP_002338124.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia YP_002338125.1 identified by match to protein family HMM PF07690 YP_002338126.1 identified by match to protein family HMM PF01957 YP_002338127.1 identified by match to protein family HMM PF01145 YP_002338128.1 identified by match to protein family HMM PF00300 YP_002338129.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002338130.1 identified by glimmer; putative YP_002338131.1 identified by match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492 YP_002338132.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002338133.1 identified by match to protein family HMM PF00583 YP_002338135.1 identified by match to protein family HMM PF00201; match to protein family HMM PF04101; match to protein family HMM TIGR01426 YP_002338136.1 identified by match to protein family HMM PF02588 YP_002338137.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002338138.1 identified by match to protein family HMM PF00583 YP_002338139.1 identified by match to protein family HMM PF00149 YP_002338140.1 identified by match to protein family HMM PF07853 YP_002338141.1 identified by match to protein family HMM PF00583 YP_002338143.1 identified by match to protein family HMM PF00583 YP_002338145.1 identified by match to protein family HMM PF00583 YP_002338147.1 identified by match to protein family HMM PF00583 YP_002338148.1 identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874 YP_002338150.1 identified by glimmer; putative YP_002338151.1 identified by glimmer; putative YP_002338153.1 identified by match to protein family HMM PF01209; match to protein family HMM PF05724; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002338154.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate YP_002338156.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_002338158.1 identified by match to protein family HMM PF00589 YP_002338159.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338160.1 identified by glimmer; putative YP_002338161.1 identified by glimmer; putative YP_002338162.1 identified by match to protein family HMM PF01381 YP_002338163.1 identified by match to protein family HMM PF01381 YP_002338165.1 identified by glimmer; putative YP_002338166.1 identified by glimmer; putative YP_002338167.1 identified by match to protein family HMM PF09524; match to protein family HMM TIGR02220 YP_002338169.1 identified by glimmer; putative YP_002338170.1 identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439 YP_002338174.1 identified by match to protein family HMM PF03819 YP_002338176.1 identified by match to protein family HMM PF09643 YP_002338177.1 identified by glimmer; putative YP_002338178.1 identified by glimmer; putative YP_002338181.1 identified by glimmer; putative YP_002338182.1 identified by match to protein family HMM TIGR01637 YP_002338183.1 identified by match to protein family HMM PF00589 YP_002338187.1 identified by glimmer; putative YP_002338189.1 identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558 YP_002338190.1 identified by match to protein family HMM PF03354 YP_002338191.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_002338192.1 identified by match to protein family HMM PF00574 YP_002338193.1 identified by match to protein family HMM PF05065 YP_002338195.1 identified by glimmer; putative YP_002338196.1 identified by match to protein family HMM TIGR01725 YP_002338198.1 identified by match to protein family HMM TIGR01603 YP_002338199.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338200.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002338201.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01760 YP_002338202.1 identified by match to protein family HMM TIGR01633 YP_002338203.1 identified by match to protein family HMM TIGR01665 YP_002338205.1 identified by match to protein family HMM PF00589 YP_002338207.1 identified by glimmer; putative YP_002338208.1 identified by match to protein family HMM PF01183 YP_002338209.1 identified by match to protein family HMM PF01381 YP_002338210.1 identified by glimmer; putative YP_002338211.1 identified by glimmer; putative YP_002338212.1 identified by match to protein family HMM PF01580 YP_002338218.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002338219.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_002338220.1 identified by glimmer; putative YP_002338221.1 identified by glimmer; putative YP_002338222.1 identified by match to protein family HMM PF00753 YP_002338223.1 identified by glimmer; putative YP_002338224.1 identified by match to protein family HMM PF00255 YP_002338225.1 identified by match to protein family HMM PF01841 YP_002338226.1 identified by match to protein family HMM PF01882 YP_002338227.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728 YP_002338228.1 identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01580 YP_002338229.1 identified by match to protein family HMM TIGR01660 YP_002338230.1 identified by match to protein family HMM PF02613; match to protein family HMM TIGR00684 YP_002338231.1 identified by match to protein family HMM PF02665; match to protein family HMM TIGR00351 YP_002338232.1 identified by match to protein family HMM PF00027; match to protein family HMM PF00325 YP_002338233.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666 YP_002338234.1 catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways YP_002338235.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_002338236.1 identified by match to protein family HMM PF02391 YP_002338237.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682 YP_002338238.1 identified by match to protein family HMM PF07690 YP_002338239.1 identified by match to protein family HMM PF04024 YP_002338240.1 identified by match to protein family HMM PF03547 YP_002338242.1 catalyzes the formation of siroheme from precorrin-2 YP_002338243.1 identified by match to protein family HMM PF01903 YP_002338244.1 this protein contains the C-terminal section of uroporphyrinogen-III methyltransferase fused with uroporphyrinogen-III synthase; studies on Clostridium josui indicate that this protein has uroporphyrinogen-III methylase activity; functions in tetrapyrrole and heme biosynthesis YP_002338245.1 identified by match to protein family HMM PF00355; match to protein family HMM TIGR02378 YP_002338246.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01077; match to protein family HMM PF03460; match to protein family HMM PF04324; match to protein family HMM PF07992; match to protein family HMM TIGR02374 YP_002338247.1 identified by match to protein family HMM PF01814; match to protein family HMM PF04405; match to protein family HMM TIGR03652 YP_002338248.1 identified by glimmer; putative YP_002338249.1 identified by match to protein family HMM PF05901 YP_002338250.1 identified by glimmer; putative YP_002338251.1 identified by glimmer; putative YP_002338252.1 identified by match to protein family HMM PF00797 YP_002338253.1 identified by match to protein family HMM PF07819 YP_002338254.1 identified by match to protein family HMM PF04232 YP_002338255.1 identified by glimmer; putative YP_002338257.1 identified by glimmer; putative YP_002338259.1 identified by glimmer; putative YP_002338260.1 identified by match to protein family HMM PF01966 YP_002338261.1 identified by match to protein family HMM PF00005 YP_002338262.1 identified by match to protein family HMM PF06539 YP_002338263.1 identified by glimmer; putative YP_002338264.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_002338265.1 identified by match to protein family HMM PF00440 YP_002338267.1 identified by match to protein family HMM PF03130 YP_002338268.1 identified by glimmer; putative YP_002338269.1 identified by match to protein family HMM PF06491 YP_002338271.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002338273.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002338275.1 identified by match to protein family HMM PF00515; match to protein family HMM PF03412; match to protein family HMM PF07719 YP_002338276.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 2 subfamily; some organisms carry two different copies of this enzyme; in some organisms, the type 2 subfamily is associated with resistance to the antibiotic pseudomonic acid (mupirocin) YP_002338277.1 identified by match to protein family HMM PF03413; match to protein family HMM PF07504 YP_002338278.1 identified by glimmer; putative YP_002338279.1 identified by match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143 YP_002338280.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002338281.1 identified by match to protein family HMM PF00209 YP_002338282.1 identified by match to protein family HMM PF00561 YP_002338283.1 identified by match to protein family HMM PF06042 YP_002338285.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002338286.1 identified by match to protein family HMM PF03600 YP_002338287.1 identified by match to protein family HMM PF00465 YP_002338288.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035 YP_002338289.1 identified by match to protein family HMM PF01980 YP_002338290.1 identified by match to protein family HMM PF00583 YP_002338291.1 identified by match to protein family HMM TIGR01549; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662 YP_002338292.1 identified by match to protein family HMM PF00583 YP_002338293.1 identified by match to protein family HMM PF00005 YP_002338296.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002338297.1 identified by match to protein family HMM PF00903 YP_002338298.1 identified by match to protein family HMM PF01636 YP_002338299.1 identified by match to protein family HMM PF00144 YP_002338300.1 identified by match to protein family HMM PF05592; match to protein family HMM PF08531 YP_002338301.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived YP_002338302.1 identified by match to protein family HMM PF00186 YP_002338303.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF05223 YP_002338304.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds YP_002338305.1 identified by match to protein family HMM PF01553; match to protein family HMM TIGR00530 YP_002338306.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_002338307.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes YP_002338308.1 identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945 YP_002338310.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002338311.1 identified by match to protein family HMM PF00753 YP_002338312.1 identified by match to protein family HMM PF02630 YP_002338313.1 identified by match to protein family HMM PF00011; match to protein family HMM PF04969 YP_002338314.1 identified by match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536 YP_002338315.1 identified by match to protein family HMM PF00583 YP_002338316.1 identified by glimmer; putative YP_002338317.1 identified by match to protein family HMM PF01569 YP_002338318.1 identified by match to protein family HMM PF01497 YP_002338319.1 catalyzes the transamination of D-amino acids and their alpha-keto acids YP_002338320.1 identified by match to protein family HMM PF00881 YP_002338322.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002338323.1 identified by match to protein family HMM PF00857 YP_002338324.1 identified by match to protein family HMM PF00293 YP_002338325.1 identified by match to protein family HMM PF00011 YP_002338326.1 identified by match to protein family HMM PF00924 YP_002338327.1 identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002338328.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281 YP_002338329.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01418 YP_002338330.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01380 YP_002338331.1 similar to zinc-dependent eukaryotic ADH enzymes and distinct from fermentative ADHs YP_002338332.1 identified by match to protein family HMM PF00528 YP_002338333.1 identified by match to protein family HMM PF00528 YP_002338334.1 identified by match to protein family HMM PF00144 YP_002338335.1 identified by match to protein family HMM PF05139 YP_002338337.1 identified by match to protein family HMM PF00535 YP_002338339.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_002338340.1 identified by match to protein family HMM PF07690 YP_002338341.1 identified by match to protein family HMM PF02698 YP_002338342.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01186 YP_002338343.1 identified by match to protein family HMM PF00528; match to protein family HMM PF04069 YP_002338344.1 identified by match to protein family HMM PF00324; match to protein family HMM TIGR00905 YP_002338346.1 identified by match to protein family HMM PF07728 YP_002338347.1 identified by glimmer; putative YP_002338348.1 identified by glimmer; putative YP_002338349.1 remodeling and anchoring of the chromosome protein; in Bacillus subtilis this protein functions in polar chromosome segregation during sporulation; binds inverted sequence motifs called ram along the chromosome; condenses DNA via RacA-RacA interactions YP_002338350.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_002338351.1 identified by match to protein family HMM PF00171 YP_002338352.1 identified by match to protein family HMM PF07997 YP_002338353.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF09385 YP_002338355.1 identified by match to protein family HMM PF00202 YP_002338356.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02429 YP_002338357.1 identified by match to protein family HMM PF01144; match to protein family HMM TIGR02428 YP_002338358.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine YP_002338359.1 identified by match to protein family HMM PF00583 YP_002338360.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_002338361.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00238 YP_002338363.1 identified by match to protein family HMM PF06855 YP_002338365.1 identified by glimmer; putative YP_002338367.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative YP_002338369.1 identified by match to protein family HMM PF07070 YP_002338370.1 identified by match to protein family HMM PF01569 YP_002338371.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002338372.1 identified by match to protein family HMM PF00085 YP_002338373.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338374.1 identified by glimmer; putative YP_002338375.1 identified by glimmer; putative YP_002338376.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002338377.1 identified by glimmer; putative YP_002338379.1 identified by glimmer; putative YP_002338381.1 identified by glimmer; putative YP_002338382.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in B. subtilis this protein is activated in response to cell wall antibiotics, ethanol, heat, acid, and superoxide stress YP_002338385.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338386.1 identified by glimmer; putative YP_002338387.1 identified by glimmer; putative YP_002338389.1 cis/trans isomerase of peptidylprolyl; PPIase; membrane-bound lipoprotein YP_002338390.1 identified by glimmer; putative YP_002338391.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002338392.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002338393.1 identified by match to protein family HMM PF08863 YP_002338395.1 identified by glimmer; putative YP_002338399.1 identified by match to protein family HMM PF01679 YP_002338400.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002338401.1 identified by match to protein family HMM PF07690 YP_002338402.1 identified by match to protein family HMM PF01521 YP_002338403.1 forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle, glyoxylate cycle and respiration YP_002338404.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C YP_002338405.1 identified by match to protein family HMM TIGR02317 YP_002338406.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002338407.1 identified by match to protein family HMM PF03446; match to protein family HMM PF03807 YP_002338408.1 identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722 YP_002338409.1 identified by match to protein family HMM PF01810 YP_002338410.1 catalyzes the formation of 3-hydroxy-2-methylpropanoate from 3-hydroxy-2-methylpropanoyl-CoA YP_002338411.1 identified by glimmer; putative YP_002338413.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00619 YP_002338414.1 identified by match to protein family HMM PF02463 YP_002338415.1 identified by glimmer; putative YP_002338416.1 identified by match to protein family HMM PF01022 YP_002338418.1 identified by glimmer; putative YP_002338419.1 identified by glimmer; putative YP_002338420.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF07690 YP_002338421.1 catalyzes the formation of 2,3-dihydroxybenzoate from 2,3-dihydro-2,3-dihydroxybenzoate; involved in the biosynthesis of siderophores, enterobactin, bacillibactin or vibriobactin YP_002338422.1 synthesizes isochorismate from chorismate as part of the biosynthesis of the siderophore 2,3-dihydroxybenzoate; can also be used in menaquinone synthesis YP_002338423.1 identified by match to protein family HMM PF00501; match to protein family HMM TIGR02275 YP_002338424.1 identified by match to protein family HMM PF00550; match to protein family HMM PF00857 YP_002338425.1 identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733 YP_002338426.1 identified by match to protein family HMM PF03621 YP_002338427.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002338428.1 identified by match to protein family HMM PF01648 YP_002338430.1 identified by match to protein family HMM PF00216 YP_002338432.1 identified by match to protein family HMM PF05163 YP_002338433.1 identified by match to protein family HMM PF00082; match to protein family HMM PF05922 YP_002338434.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002338435.1 identified by glimmer; putative YP_002338436.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338437.1 identified by match to protein family HMM PF01909 YP_002338438.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338440.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002338441.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); Bacillus have two copies of the threonyl-tRNA synthetase, threonine starvation induces both proteins YP_002338442.1 identified by match to protein family HMM PF00005 YP_002338443.1 identified by match to protein family HMM PF02687 YP_002338444.1 identified by match to protein family HMM PF07690 YP_002338445.1 identified by match to protein family HMM PF00528 YP_002338446.1 identified by match to protein family HMM PF00528 YP_002338447.1 catalyzes the formation of acetyl phosphate from pyruvate YP_002338448.1 identified by match to protein family HMM PF02535 YP_002338449.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002338451.1 identified by match to protein family HMM PF00753 YP_002338452.1 identified by match to protein family HMM PF01156 YP_002338453.1 identified by glimmer; putative YP_002338455.1 identified by glimmer; putative YP_002338456.1 identified by match to protein family HMM PF00583 YP_002338457.1 identified by match to protein family HMM PF00753 YP_002338458.1 identified by match to protein family HMM PF00440 YP_002338459.1 identified by match to protein family HMM PF03176 YP_002338460.1 identified by glimmer; putative YP_002338461.1 identified by match to protein family HMM PF00583 YP_002338462.1 identified by match to protein family HMM PF00583; match to protein family HMM PF00805 YP_002338463.1 identified by match to protein family HMM PF00583 YP_002338464.1 identified by match to protein family HMM PF00892; match to protein family HMM PF08449 YP_002338465.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002338467.1 identified by glimmer; putative YP_002338468.1 identified by match to protein family HMM PF00561 YP_002338469.1 catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX YP_002338470.1 identified by glimmer; putative YP_002338471.1 identified by match to protein family HMM PF00583 YP_002338473.1 identified by match to protein family HMM PF00313 YP_002338474.1 identified by match to protein family HMM PF02517 YP_002338477.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002338478.1 identified by glimmer; putative YP_002338479.1 identified by match to protein family HMM PF01047 YP_002338480.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002338481.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002338482.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_002338483.1 identified by match to protein family HMM PF03417 YP_002338484.1 identified by glimmer; putative YP_002338485.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002338486.1 identified by match to protein family HMM PF03473; match to protein family HMM PF03475 YP_002338487.1 identified by match to protein family HMM PF00583 YP_002338488.1 identified by match to protein family HMM PF07081 YP_002338489.1 identified by glimmer; putative YP_002338490.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002338491.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002338492.1 identified by glimmer; putative YP_002338493.1 identified by match to protein family HMM PF01810 YP_002338494.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002338495.1 identified by glimmer; putative YP_002338496.1 identified by match to protein family HMM PF01391 YP_002338498.1 identified by match to protein family HMM PF01391 YP_002338499.1 identified by match to protein family HMM PF00190 YP_002338500.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02824 YP_002338501.1 identified by glimmer; putative YP_002338502.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01593 YP_002338503.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_002338504.1 identified by glimmer; putative YP_002338505.1 identified by glimmer; putative YP_002338506.1 identified by match to protein family HMM PF01596 YP_002338507.1 identified by match to protein family HMM PF05816 YP_002338508.1 identified by glimmer; putative YP_002338509.1 identified by match to protein family HMM PF02638 YP_002338510.1 identified by match to protein family HMM PF02302 YP_002338511.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00410 YP_002338513.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling YP_002338514.1 identified by match to protein family HMM PF01869 YP_002338515.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_002338516.1 identified by match to protein family HMM PF00266 YP_002338517.1 catalyzes the formation of 2-oxobutanoate from L-threonine; catabolic YP_002338518.1 identified by match to protein family HMM PF06803 YP_002338520.1 identified by glimmer; putative YP_002338521.1 identified by match to protein family HMM PF00753 YP_002338522.1 identified by glimmer; putative YP_002338523.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002338524.1 identified by glimmer; putative YP_002338525.1 identified by glimmer; putative YP_002338527.1 identified by match to protein family HMM PF00440 YP_002338528.1 identified by match to protein family HMM PF07690 YP_002338529.1 identified by match to protein family HMM PF02687 YP_002338530.1 identified by match to protein family HMM PF00005 YP_002338531.1 identified by match to protein family HMM PF03848; match to protein family HMM PF05724; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002338532.1 identified by match to protein family HMM PF00903; match to protein family HMM PF06983 YP_002338533.1 identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776 YP_002338534.1 identified by match to protein family HMM PF01047 YP_002338535.1 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate YP_002338536.1 identified by glimmer; putative YP_002338537.1 identified by glimmer; putative YP_002338539.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01893 YP_002338541.1 identified by match to protein family HMM PF00657 YP_002338542.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002338543.1 identified by glimmer; putative YP_002338544.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002338545.1 identified by glimmer; putative YP_002338546.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002338547.1 identified by match to protein family HMM PF00144 YP_002338548.1 identified by match to protein family HMM PF00149 YP_002338549.1 identified by glimmer; putative YP_002338550.1 identified by match to protein family HMM PF00005 YP_002338551.1 identified by match to protein family HMM PF01061 YP_002338552.1 identified by match to protein family HMM PF00440 YP_002338553.1 identified by glimmer; putative YP_002338554.1 identified by match to protein family HMM PF04463; match to protein family HMM PF08349 YP_002338555.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002338556.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002338557.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002338558.1 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA YP_002338559.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002338560.1 identified by match to protein family HMM PF01039 YP_002338561.1 identified by match to protein family HMM PF00501 YP_002338562.1 identified by glimmer; putative YP_002338563.1 identified by match to protein family HMM PF00583 YP_002338564.1 identified by glimmer; putative YP_002338566.1 identified by match to protein family HMM PF05163 YP_002338567.1 identified by match to protein family HMM PF00768 YP_002338568.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002338569.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002338570.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00488 YP_002338571.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338572.1 Enables the cleavage of the glycosidic bond in S-adenosylhomocysteine YP_002338574.1 identified by match to protein family HMM PF00583 YP_002338575.1 identified by glimmer; putative YP_002338576.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504; match to protein family HMM PF07523; match to protein family HMM TIGR01167 YP_002338578.1 identified by match to protein family HMM PF08327 YP_002338579.1 identified by match to protein family HMM PF03551 YP_002338580.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338581.1 identified by match to protein family HMM PF00144 YP_002338582.1 identified by match to protein family HMM PF00376; match to protein family HMM PF06445 YP_002338583.1 identified by match to protein family HMM PF07690 YP_002338585.1 identified by match to protein family HMM PF08241 YP_002338586.1 identified by glimmer; putative YP_002338590.1 identified by match to protein family HMM PF01432; match to protein family HMM TIGR02289 YP_002338592.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002338593.1 identified by glimmer; putative YP_002338594.1 identified by match to protein family HMM PF08240 YP_002338595.1 identified by glimmer; putative YP_002338596.1 identified by match to protein family HMM PF04239 YP_002338597.1 identified by match to protein family HMM PF05724; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002338600.1 identified by match to protein family HMM PF03848; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002338601.1 identified by match to protein family HMM PF08450 YP_002338603.1 identified by match to protein family HMM PF01921; match to protein family HMM TIGR00467 YP_002338604.1 identified by match to protein family HMM PF07486 YP_002338606.1 identified by match to protein family HMM PF03069 YP_002338607.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002338608.1 identified by match to protein family HMM PF02518 YP_002338610.1 identified by match to protein family HMM PF00005 YP_002338611.1 identified by match to protein family HMM PF00005 YP_002338612.1 identified by match to protein family HMM PF02687 YP_002338614.1 identified by glimmer; putative YP_002338616.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002338617.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002338618.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli YP_002338619.1 identified by match to protein family HMM PF03070 YP_002338620.1 identified by match to protein family HMM TIGR03601 YP_002338624.1 identified by glimmer; putative YP_002338628.1 identified by glimmer; putative YP_002338631.1 identified by glimmer; putative YP_002338632.1 identified by glimmer; putative YP_002338634.1 identified by glimmer; putative YP_002338635.1 identified by glimmer; putative YP_002338637.1 identified by match to protein family HMM PF09346 YP_002338640.1 identified by glimmer; putative YP_002338643.1 identified by glimmer; putative YP_002338644.1 identified by glimmer; putative YP_002338645.1 identified by match to protein family HMM PF08874 YP_002338646.1 identified by glimmer; putative YP_002338647.1 identified by match to protein family HMM PF00067 YP_002338648.1 identified by match to protein family HMM PF07690 YP_002338649.1 identified by match to protein family HMM PF00132 YP_002338650.1 identified by match to protein family HMM PF07561 YP_002338651.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338652.1 identified by match to protein family HMM PF05995 YP_002338653.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002338654.1 identified by glimmer; putative YP_002338655.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002338657.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035 YP_002338658.1 identified by match to protein family HMM PF07155 YP_002338659.1 identified by match to protein family HMM PF00005 YP_002338660.1 identified by match to protein family HMM PF02361 YP_002338661.1 identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732 YP_002338662.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF07694 YP_002338664.1 identified by match to protein family HMM PF04229 YP_002338665.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002338666.1 identified by match to protein family HMM PF01569 YP_002338667.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793 YP_002338668.1 identified by match to protein family HMM PF00440; match to protein family HMM PF08360 YP_002338669.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01370 YP_002338670.1 identified by match to protein family HMM PF07690 YP_002338671.1 identified by match to protein family HMM PF00144 YP_002338674.1 identified by glimmer; putative YP_002338676.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002338677.1 identified by match to protein family HMM PF01965 YP_002338678.1 identified by match to protein family HMM PF03966; match to protein family HMM PF08241 YP_002338679.1 identified by match to protein family HMM PF07690 YP_002338680.1 identified by glimmer; putative YP_002338682.1 identified by match to protein family HMM PF00583 YP_002338683.1 identified by match to protein family HMM PF03009 YP_002338687.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002338688.1 identified by glimmer; putative YP_002338689.1 identified by match to protein family HMM PF00892 YP_002338690.1 identified by match to protein family HMM PF00583 YP_002338692.1 identified by match to protein family HMM PF00293 YP_002338693.1 identified by glimmer; putative YP_002338694.1 identified by match to protein family HMM PF00144 YP_002338695.1 identified by glimmer; putative YP_002338696.1 identified by match to protein family HMM PF07690 YP_002338698.1 identified by match to protein family HMM PF00583 YP_002338699.1 identified by match to protein family HMM PF00293 YP_002338700.1 binds the polymerase to DNA and acts as a sliding clamp YP_002338701.1 identified by match to protein family HMM PF00293 YP_002338702.1 identified by match to protein family HMM PF00561 YP_002338705.1 identified by glimmer; putative YP_002338706.1 identified by match to protein family HMM PF01042 YP_002338707.1 identified by match to protein family HMM PF09234 YP_002338708.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338709.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338710.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00756 YP_002338711.1 identified by glimmer; putative YP_002338713.1 identified by match to protein family HMM PF01734 YP_002338714.1 identified by match to protein family HMM PF08000 YP_002338715.1 identified by match to protein family HMM PF00583 YP_002338717.1 identified by match to protein family HMM PF00583 YP_002338719.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell YP_002338720.1 identified by glimmer; putative YP_002338721.1 identified by match to protein family HMM PF01541 YP_002338722.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338725.1 identified by glimmer; putative YP_002338726.1 identified by match to protein family HMM PF00293 YP_002338727.1 identified by match to protein family HMM PF01266 YP_002338729.1 identified by match to protein family HMM PF00797 YP_002338730.1 identified by match to protein family HMM PF08877 YP_002338732.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549 YP_002338733.1 identified by glimmer; putative YP_002338734.1 identified by glimmer; putative YP_002338735.1 identified by match to protein family HMM PF01569 YP_002338736.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02806; match to protein family HMM PF02922; match to protein family HMM PF03714; match to protein family HMM TIGR02104 YP_002338737.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504 YP_002338738.1 identified by match to protein family HMM PF06445 YP_002338740.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase YP_002338741.1 identified by glimmer; putative YP_002338742.1 identified by match to protein family HMM PF00561 YP_002338744.1 identified by glimmer; putative YP_002338745.1 identified by glimmer; putative YP_002338746.1 identified by match to protein family HMM PF08002 YP_002338747.1 identified by match to protein family HMM PF06081 YP_002338748.1 identified by match to protein family HMM PF00583 YP_002338750.1 identified by match to protein family HMM PF09580; match to protein family HMM TIGR02898 YP_002338751.1 identified by match to protein family HMM PF03413; match to protein family HMM TIGR02889 YP_002338752.1 identified by match to protein family HMM PF01471; match to protein family HMM PF07486; match to protein family HMM TIGR02869 YP_002338755.1 identified by match to protein family HMM PF00144 YP_002338756.1 identified by match to protein family HMM PF03301; match to protein family HMM TIGR03036 YP_002338757.1 identified by match to protein family HMM PF04199; match to protein family HMM TIGR03035 YP_002338758.1 identified by match to protein family HMM PF00266; match to protein family HMM TIGR01814 YP_002338759.1 identified by match to protein family HMM PF00440 YP_002338760.1 identified by match to protein family HMM PF00293 YP_002338761.1 identified by match to protein family HMM PF00797 YP_002338763.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002338764.1 identified by glimmer; putative YP_002338765.1 identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728 YP_002338766.1 identified by glimmer; putative YP_002338767.1 identified by glimmer; putative YP_002338768.1 identified by match to protein family HMM PF00583 YP_002338769.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002338771.1 identified by glimmer; putative YP_002338772.1 E3 component of acetoin cleaving system; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_002338773.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_002338774.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002338775.1 identified by match to protein family HMM PF00676 YP_002338777.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002338778.1 identified by match to protein family HMM PF04229 YP_002338779.1 identified by match to protein family HMM PF00485 YP_002338780.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338781.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338782.1 identified by match to protein family HMM PF00293 YP_002338785.1 identified by match to protein family HMM PF01230 YP_002338787.1 identified by match to protein family HMM PF00528 YP_002338788.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00571; match to protein family HMM TIGR01186 YP_002338789.1 identified by match to protein family HMM PF04069 YP_002338790.1 identified by match to protein family HMM PF00574; match to protein family HMM TIGR00493 YP_002338791.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_002338792.1 identified by match to protein family HMM PF00111 YP_002338793.1 Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway YP_002338794.1 identified by match to protein family HMM PF00583 YP_002338795.1 identified by match to protein family HMM PF00041; match to protein family HMM PF02839; match to protein family HMM PF03067 YP_002338796.1 identified by match to protein family HMM PF00201; match to protein family HMM PF04101; match to protein family HMM TIGR01426 YP_002338797.1 identified by match to protein family HMM PF03781 YP_002338798.1 In Listeria monocytogenes this protein binds a specific sites on DNA, influencing the topology and transcription; regulates flaA, proU and ompC; is osmoregulated YP_002338800.1 identified by match to protein family HMM PF02353; match to protein family HMM PF05401; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002338801.1 identified by match to protein family HMM PF04237 YP_002338802.1 identified by match to protein family HMM PF00583 YP_002338803.1 identified by match to protein family HMM PF00395; match to protein family HMM PF00753 YP_002338805.1 identified by match to protein family HMM PF00583 YP_002338806.1 identified by glimmer; putative YP_002338807.1 identified by match to protein family HMM PF00583 YP_002338809.1 identified by match to protein family HMM PF03551 YP_002338810.1 identified by match to protein family HMM PF06108 YP_002338811.1 identified by match to protein family HMM PF00580 YP_002338812.1 identified by match to protein family HMM PF02517 YP_002338813.1 identified by match to protein family HMM PF08241 YP_002338814.1 identified by match to protein family HMM PF06094 YP_002338815.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389 YP_002338816.1 identified by glimmer; putative YP_002338818.1 identified by glimmer; putative YP_002338819.1 identified by match to protein family HMM PF01183 YP_002338820.1 identified by match to protein family HMM PF01520 YP_002338824.1 identified by match to protein family HMM PF01432; match to protein family HMM TIGR02289 YP_002338825.1 catalyzes the hydrolysis of pyrophosphate to phosphate YP_002338826.1 identified by match to protein family HMM PF03067 YP_002338827.1 identified by match to protein family HMM PF00583 YP_002338828.1 identified by match to protein family HMM PF01966 YP_002338830.1 identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778 YP_002338831.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002338832.1 identified by match to protein family HMM PF00171 YP_002338833.1 identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674 YP_002338834.1 identified by glimmer; putative YP_002338835.1 identified by match to protein family HMM PF05544 YP_002338836.1 identified by match to protein family HMM PF01266 YP_002338837.1 identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM TIGR00229 YP_002338838.1 identified by glimmer; putative YP_002338839.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00111 YP_002338840.1 identified by match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992 YP_002338842.1 identified by glimmer; putative YP_002338843.1 identified by match to protein family HMM PF08876 YP_002338844.1 identified by match to protein family HMM PF04914; match to protein family HMM PF04915; match to protein family HMM PF04918 YP_002338845.1 identified by match to protein family HMM PF00583 YP_002338846.1 identified by match to protein family HMM PF00496 YP_002338847.1 identified by match to protein family HMM PF00877 YP_002338848.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746 YP_002338850.1 identified by match to protein family HMM PF04977 YP_002338851.1 identified by match to protein family HMM PF01965 YP_002338852.1 identified by match to protein family HMM PF00383 YP_002338853.1 identified by glimmer; putative YP_002338855.1 identified by glimmer; putative YP_002338856.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002338857.1 identified by glimmer; putative YP_002338858.1 catalyzes the removal of N-terminal dipeptides when proline is the penultimate residue YP_002338859.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002338860.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002338862.1 identified by match to protein family HMM PF00583 YP_002338864.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702 YP_002338865.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_002338866.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_002338867.1 identified by match to protein family HMM PF01432 YP_002338868.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002338869.1 identified by match to protein family HMM PF07552 YP_002338871.1 identified by match to protein family HMM PF07552 YP_002338872.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338873.1 identified by match to protein family HMM PF00583 YP_002338874.1 identified by glimmer; putative YP_002338875.1 identified by match to protein family HMM PF00583 YP_002338877.1 identified by glimmer; putative YP_002338878.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002338880.1 identified by match to protein family HMM PF04519 YP_002338882.1 identified by match to protein family HMM PF00496 YP_002338883.1 identified by match to protein family HMM PF07690 YP_002338886.1 identified by glimmer; putative YP_002338887.1 identified by glimmer; putative YP_002338888.1 identified by match to protein family HMM PF04226 YP_002338889.1 identified by match to protein family HMM PF01156 YP_002338890.1 identified by glimmer; putative YP_002338891.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002338892.1 identified by glimmer; putative YP_002338893.1 identified by glimmer; putative YP_002338895.1 identified by match to protein family HMM PF07690 YP_002338896.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338898.1 catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate YP_002338899.1 identified by match to protein family HMM PF07977 YP_002338900.1 catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type II pantothenate kinases are not regulated by feedback inhibition by coenzyme A YP_002338906.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413 YP_002338907.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413 YP_002338908.1 identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413 YP_002338909.1 identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413 YP_002338910.1 identified by match to protein family HMM PF09501; match to protein family HMM TIGR02413 YP_002338911.1 identified by match to protein family HMM PF01594 YP_002338912.1 identified by glimmer; putative YP_002338913.1 catalyzes the release of sulfite from alkanesulfonates YP_002338915.1 identified by match to protein family HMM PF01609 YP_002338917.1 identified by match to protein family HMM PF04069; match to protein family HMM PF09084; match to protein family HMM TIGR01728 YP_002338918.1 identified by match to protein family HMM PF00005 YP_002338919.1 identified by glimmer; putative YP_002338920.1 identified by match to protein family HMM PF00440 YP_002338921.1 identified by match to protein family HMM PF04167 YP_002338922.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002338924.1 identified by match to protein family HMM PF07719 YP_002338925.1 identified by match to protein family HMM PF04127 YP_002338926.1 identified by match to protein family HMM PF02522 YP_002338927.1 identified by glimmer; putative YP_002338928.1 identified by match to protein family HMM PF03738 YP_002338930.1 identified by match to protein family HMM PF00583 YP_002338933.1 identified by match to protein family HMM PF00583 YP_002338934.1 identified by match to protein family HMM PF00583 YP_002338935.1 identified by match to protein family HMM PF01909 YP_002338936.1 identified by match to protein family HMM PF06352 YP_002338937.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002338938.1 identified by match to protein family HMM PF00903 YP_002338939.1 identified by glimmer; putative YP_002338940.1 identified by match to protein family HMM PF01522 YP_002338941.1 identified by glimmer; putative YP_002338942.1 identified by match to protein family HMM PF03741 YP_002338943.1 identified by match to protein family HMM PF00884 YP_002338944.1 identified by match to protein family HMM PF00005 YP_002338945.1 identified by glimmer; putative YP_002338946.1 identified by match to protein family HMM PF03176 YP_002338947.1 identified by match to protein family HMM PF00440 YP_002338950.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis YP_002338951.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate YP_002338952.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis YP_002338953.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis YP_002338954.1 catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate YP_002338957.1 identified by match to protein family HMM PF00583; match to protein family HMM PF00857 YP_002338958.1 identified by glimmer; putative YP_002338959.1 identified by match to protein family HMM PF06347; match to protein family HMM PF06725; match to protein family HMM PF08239 YP_002338961.1 identified by glimmer; putative YP_002338962.1 malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate YP_002338964.1 identified by match to protein family HMM PF02653 YP_002338965.1 identified by glimmer; putative YP_002338966.1 identified by match to protein family HMM PF02653 YP_002338967.1 identified by match to protein family HMM PF00005 YP_002338968.1 identified by match to protein family HMM PF04198 YP_002338969.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_002338970.1 identified by match to protein family HMM PF07883 YP_002338971.1 identified by match to protein family HMM PF01791 YP_002338972.1 identified by glimmer; putative YP_002338973.1 identified by match to protein family HMM PF03992 YP_002338974.1 identified by match to protein family HMM PF07690 YP_002338975.1 identified by match to protein family HMM PF01022 YP_002338976.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM TIGR00804 YP_002338977.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway YP_002338978.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis YP_002338979.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_002338980.1 identified by match to protein family HMM PF01546 YP_002338981.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339 YP_002338982.1 identified by match to protein family HMM PF00324 YP_002338983.1 identified by match to protein family HMM PF01139 YP_002338984.1 identified by match to protein family HMM PF00487 YP_002338985.1 identified by match to protein family HMM PF05547; match to protein family HMM TIGR03296 YP_002338986.1 identified by match to protein family HMM PF00245 YP_002338993.1 identified by match to protein family HMM PF04397 YP_002338994.1 Phosphoprylates nucleosides or dinucleosides to make UMP or CMP as part of the pyrimidine salvage pathway YP_002338995.1 identified by match to protein family HMM PF00583 YP_002338996.1 identified by match to protein family HMM PF00903 YP_002338998.1 identified by glimmer; putative YP_002338999.1 identified by glimmer; putative YP_002339001.1 identified by match to protein family HMM PF03551 YP_002339002.1 identified by match to protein family HMM PF07726; match to protein family HMM PF07728 YP_002339003.1 identified by match to protein family HMM PF01882 YP_002339005.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002339006.1 identified by match to protein family HMM PF00202 YP_002339007.1 identified by match to protein family HMM PF00199 YP_002339008.1 identified by match to protein family HMM PF00528 YP_002339009.1 identified by match to protein family HMM PF00005 YP_002339012.1 identified by match to protein family HMM PF01047 YP_002339013.1 identified by match to protein family HMM PF01979 YP_002339014.1 identified by match to protein family HMM PF00144 YP_002339015.1 identified by glimmer; putative YP_002339017.1 identified by match to protein family HMM PF01882 YP_002339018.1 identified by match to protein family HMM PF00004; match to protein family HMM PF07726; match to protein family HMM PF07728 YP_002339019.1 identified by match to protein family HMM PF03992 YP_002339020.1 identified by match to protein family HMM PF00881 YP_002339021.1 identified by match to protein family HMM PF01047 YP_002339022.1 identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF03764; match to protein family HMM PF08477; match to protein family HMM TIGR00231 YP_002339024.1 identified by match to protein family HMM PF00293 YP_002339025.1 identified by glimmer; putative YP_002339026.1 identified by glimmer; putative YP_002339028.1 identified by match to protein family HMM PF00005 YP_002339029.1 identified by match to protein family HMM PF00392 YP_002339030.1 identified by match to protein family HMM PF01370 YP_002339031.1 identified by match to protein family HMM PF00005 YP_002339032.1 identified by match to protein family HMM PF02687 YP_002339033.1 identified by match to protein family HMM PF02687 YP_002339034.1 identified by glimmer; putative YP_002339035.1 identified by match to protein family HMM PF00144 YP_002339036.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_002339037.1 identified by match to protein family HMM PF00583 YP_002339038.1 identified by glimmer; putative YP_002339039.1 identified by match to protein family HMM PF00293 YP_002339040.1 identified by match to protein family HMM PF00892 YP_002339041.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002339042.1 identified by match to protein family HMM PF02639 YP_002339045.1 phosphorylates nucleosides or dinucleosides to make UMP or CMP as part of the pyrimidine salvage pathway YP_002339046.1 identified by match to protein family HMM PF00149 YP_002339047.1 identified by match to protein family HMM PF01636 YP_002339049.1 identified by match to protein family HMM PF01925 YP_002339050.1 identified by match to protein family HMM PF00583 YP_002339051.1 identified by match to protein family HMM PF00324 YP_002339054.1 identified by match to protein family HMM PF00376; match to protein family HMM PF07739 YP_002339055.1 identified by match to protein family HMM PF08241 YP_002339057.1 identified by glimmer; putative YP_002339058.1 identified by match to protein family HMM PF00293 YP_002339059.1 identified by match to protein family HMM PF04989 YP_002339060.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002339061.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002339062.1 identified by glimmer; putative YP_002339063.1 Modulates the activities of several enzymes which are inactive in their acetylated form YP_002339064.1 catalyzes the removal of 5-oxoproline from various penultimate amino acid residues except L-proline YP_002339065.1 identified by match to protein family HMM PF06166 YP_002339066.1 identified by match to protein family HMM PF06149 YP_002339067.1 identified by match to protein family HMM PF03746 YP_002339068.1 identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724 YP_002339069.1 identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370 YP_002339070.1 identified by match to protein family HMM PF01614; match to protein family HMM PF09339 YP_002339071.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002339072.1 identified by match to protein family HMM PF03932 YP_002339073.1 identified by match to protein family HMM PF07454; match to protein family HMM TIGR02867 YP_002339074.1 identified by match to protein family HMM PF01022 YP_002339075.1 identified by glimmer; putative YP_002339076.1 identified by match to protein family HMM PF07690 YP_002339077.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF08028 YP_002339078.1 identified by match to protein family HMM PF02698 YP_002339079.1 identified by match to protein family HMM PF00583 YP_002339080.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002339081.1 identified by match to protein family HMM PF07670 YP_002339082.1 identified by match to protein family HMM PF00395 YP_002339083.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002339084.1 identified by match to protein family HMM PF00583 YP_002339087.1 identified by match to protein family HMM PF01061 YP_002339088.1 identified by match to protein family HMM PF00440 YP_002339089.1 identified by match to protein family HMM PF00391; match to protein family HMM PF01326 YP_002339090.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF08795 YP_002339091.1 identified by match to protein family HMM PF00753 YP_002339092.1 identified by glimmer; putative YP_002339093.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF09678 YP_002339095.1 identified by match to protein family HMM PF07875 YP_002339096.1 identified by match to protein family HMM PF08892 YP_002339097.1 identified by match to protein family HMM PF01810 YP_002339098.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845 YP_002339099.1 identified by glimmer; putative YP_002339100.1 identified by match to protein family HMM PF00269 YP_002339103.1 identified by match to protein family HMM PF00269 YP_002339104.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002339107.1 catalyzes the formation of fumarate from aspartate YP_002339108.1 identified by match to protein family HMM PF00710; match to protein family HMM TIGR00519 YP_002339109.1 identified by match to protein family HMM PF01381 YP_002339110.1 identified by glimmer; putative YP_002339111.1 identified by match to protein family HMM PF01541 YP_002339112.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845 YP_002339113.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_002339114.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002339115.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002339116.1 identified by match to protein family HMM PF03323 YP_002339117.1 identified by glimmer; putative YP_002339118.1 identified by match to protein family HMM PF00072; match to protein family HMM PF08664 YP_002339119.1 identified by match to protein family HMM PF02518 YP_002339120.1 catalyzes the formation of glutamate from glutamine YP_002339121.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002339122.1 identified by match to protein family HMM PF03600 YP_002339124.1 identified by match to protein family HMM PF00144 YP_002339125.1 identified by match to protein family HMM PF00355; match to protein family HMM PF01266 YP_002339126.1 identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797 YP_002339127.1 identified by glimmer; putative YP_002339128.1 identified by match to protein family HMM PF00324 YP_002339129.1 identified by glimmer; putative YP_002339130.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_002339131.1 identified by match to protein family HMM PF00199 YP_002339132.1 identified by match to protein family HMM PF01544 YP_002339136.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002339137.1 identified by glimmer; putative YP_002339138.1 identified by match to protein family HMM TIGR01655 YP_002339141.1 identified by match to protein family HMM PF03073 YP_002339142.1 identified by match to protein family HMM PF00875; match to protein family HMM PF03441 YP_002339144.1 identified by match to protein family HMM PF01266 YP_002339145.1 identified by match to protein family HMM PF00484 YP_002339147.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_002339149.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002339150.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002339151.1 identified by match to protein family HMM PF03323 YP_002339152.1 identified by match to protein family HMM PF00583 YP_002339154.1 identified by match to protein family HMM PF00665 YP_002339155.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_002339158.1 identified by glimmer; putative YP_002339160.1 identified by match to protein family HMM PF08305 YP_002339161.1 identified by match to protein family HMM PF00106; match to protein family HMM PF00596; match to protein family HMM PF08659; match to protein family HMM TIGR02632 YP_002339162.1 catalyzes the conversion of the aldose L-fucose into the corresponding ketose L-fuculose YP_002339163.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782 YP_002339164.1 identified by match to protein family HMM PF00596 YP_002339165.1 identified by match to protein family HMM PF00532 YP_002339166.1 identified by match to protein family HMM PF02653 YP_002339167.1 identified by match to protein family HMM PF00005 YP_002339168.1 identified by match to protein family HMM PF05025 YP_002339169.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002339170.1 catalyzes the reduction of arsenate to arsenite; also can dephosphorylate tyrosine phosphorylated proteins, aryl phosphates, and acyl phosphates YP_002339171.1 identified by match to protein family HMM PF01758; match to protein family HMM TIGR00832 YP_002339172.1 identified by match to protein family HMM PF00903 YP_002339173.1 identified by match to protein family HMM PF01022 YP_002339175.1 identified by match to protein family HMM PF01872 YP_002339177.1 identified by match to protein family HMM PF02687 YP_002339178.1 identified by match to protein family HMM PF00005 YP_002339179.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002339180.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002339182.1 identified by match to protein family HMM PF01909 YP_002339183.1 identified by match to protein family HMM PF01609 YP_002339184.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_002339185.1 identified by match to protein family HMM PF00440 YP_002339186.1 identified by match to protein family HMM PF07690 YP_002339187.1 identified by match to protein family HMM PF00440 YP_002339188.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002339189.1 identified by match to protein family HMM PF01022; match to protein family HMM PF01037 YP_002339190.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002339192.1 identified by match to protein family HMM PF00903 YP_002339194.1 identified by match to protein family HMM PF08921 YP_002339195.1 identified by match to protein family HMM PF08803 YP_002339196.1 identified by match to protein family HMM PF07681 YP_002339197.1 identified by match to protein family HMM PF01047; match to protein family HMM PF03965 YP_002339198.1 identified by match to protein family HMM PF00067; match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667 YP_002339199.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002339200.1 identified by glimmer; putative YP_002339202.1 identified by match to protein family HMM PF07485 YP_002339204.1 identified by match to protein family HMM PF01071 YP_002339205.1 identified by match to protein family HMM PF07690 YP_002339206.1 identified by glimmer; putative YP_002339209.1 identified by glimmer; putative YP_002339211.1 catalyzes the formation of pyruvate from D-cysteine YP_002339212.1 identified by match to protein family HMM PF00149 YP_002339213.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002339214.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002339215.1 identified by glimmer; putative YP_002339216.1 identified by match to protein family HMM PF02517 YP_002339217.1 identified by match to protein family HMM PF00376 YP_002339218.1 identified by match to protein family HMM PF02409; match to protein family HMM TIGR00027 YP_002339220.1 identified by match to protein family HMM PF00746; match to protein family HMM TIGR01167 YP_002339221.1 identified by match to protein family HMM PF00005 YP_002339222.1 identified by match to protein family HMM PF02687 YP_002339224.1 identified by match to protein family HMM PF07690 YP_002339226.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002339227.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002339228.1 identified by match to protein family HMM PF02588 YP_002339229.1 identified by match to protein family HMM PF01047 YP_002339230.1 identified by match to protein family HMM PF00583 YP_002339231.1 identified by match to protein family HMM PF04299 YP_002339232.1 identified by match to protein family HMM PF02588 YP_002339233.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002339235.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720 YP_002339237.1 identified by match to protein family HMM PF02016 YP_002339239.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002339240.1 identified by match to protein family HMM PF06245 YP_002339241.1 identified by match to protein family HMM PF00389; match to protein family HMM PF01842; match to protein family HMM PF02826 YP_002339242.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine YP_002339245.1 identified by match to protein family HMM PF07883 YP_002339246.1 identified by match to protein family HMM PF00165 YP_002339247.1 identified by glimmer; putative YP_002339248.1 identified by match to protein family HMM PF01804 YP_002339250.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_002339251.1 identified by match to protein family HMM PF00395; match to protein family HMM PF01510; match to protein family HMM PF08239 YP_002339253.1 identified by match to protein family HMM PF06352 YP_002339254.1 identified by glimmer; putative YP_002339255.1 identified by match to protein family HMM PF00395 YP_002339256.1 identified by match to protein family HMM PF00903 YP_002339259.1 identified by match to protein family HMM PF07690 YP_002339261.1 identified by match to protein family HMM PF00561 YP_002339262.1 identified by match to protein family HMM PF01047 YP_002339263.1 identified by match to protein family HMM PF07690 YP_002339264.1 identified by match to protein family HMM PF00144 YP_002339265.1 identified by glimmer; putative YP_002339266.1 identified by match to protein family HMM PF01061 YP_002339267.1 identified by match to protein family HMM PF00005 YP_002339271.1 identified by match to protein family HMM PF00893 YP_002339272.1 identified by match to protein family HMM PF00440 YP_002339273.1 identified by glimmer; putative YP_002339275.1 identified by match to protein family HMM PF01289 YP_002339276.1 identified by match to protein family HMM PF02667 YP_002339277.1 identified by glimmer; putative YP_002339278.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_002339279.1 identified by match to protein family HMM PF04434 YP_002339281.1 identified by glimmer; putative YP_002339284.1 identified by match to protein family HMM PF00005 YP_002339285.1 identified by match to protein family HMM PF02361 YP_002339287.1 identified by match to protein family HMM TIGR01167 YP_002339288.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity YP_002339289.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03606 YP_002339291.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002339292.1 identified by glimmer; putative YP_002339293.1 identified by match to protein family HMM PF00376 YP_002339296.1 identified by match to protein family HMM PF01381 YP_002339297.1 identified by match to protein family HMM PF00078; match to protein family HMM PF08388 YP_002339298.1 identified by match to protein family HMM PF04229 YP_002339299.1 identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011 YP_002339300.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002339302.1 identified by glimmer; putative YP_002339303.1 identified by match to protein family HMM PF01638 YP_002339304.1 identified by match to protein family HMM PF00881 YP_002339306.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002339308.1 identified by glimmer; putative YP_002339309.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002339311.1 identified by match to protein family HMM PF00005 YP_002339312.1 identified by glimmer; putative YP_002339313.1 identified by glimmer; putative YP_002339314.1 identified by match to protein family HMM PF01381 YP_002339316.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254 YP_002339320.1 identified by match to protein family HMM PF00293 YP_002339321.1 identified by match to protein family HMM PF00903 YP_002339322.1 identified by match to protein family HMM PF00480 YP_002339323.1 identified by match to protein family HMM PF00132 YP_002339324.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002339327.1 identified by match to protein family HMM PF01594 YP_002339328.1 identified by match to protein family HMM PF04226 YP_002339329.1 identified by match to protein family HMM PF00583 YP_002339330.1 identified by glimmer; putative YP_002339331.1 identified by match to protein family HMM PF01391 YP_002339332.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01391 YP_002339333.1 identified by glimmer; putative YP_002339334.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002339335.1 identified by match to protein family HMM PF07336 YP_002339336.1 identified by match to protein family HMM PF07690 YP_002339338.1 identified by glimmer; putative YP_002339341.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471 YP_002339344.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR02623 YP_002339345.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM TIGR02622 YP_002339346.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM PF08421; match to protein family HMM PF08484 YP_002339347.1 identified by match to protein family HMM PF01370 YP_002339349.1 identified by match to protein family HMM PF00018; match to protein family HMM PF07653 YP_002339350.1 identified by match to protein family HMM PF00892 YP_002339351.1 identified by match to protein family HMM PF00805 YP_002339352.1 identified by match to protein family HMM PF06906 YP_002339354.1 identified by match to protein family HMM PF00370; match to protein family HMM PF02782; match to protein family HMM TIGR01314 YP_002339355.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791 YP_002339356.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity YP_002339357.1 similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate YP_002339358.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002339359.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate YP_002339360.1 identified by match to protein family HMM PF00479 YP_002339361.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002339362.1 identified by match to protein family HMM PF00296; match to protein family HMM TIGR03571 YP_002339363.1 identified by glimmer; putative YP_002339364.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002339365.1 identified by match to protein family HMM PF00106 YP_002339367.1 identified by match to protein family HMM PF02012 YP_002339368.1 identified by match to protein family HMM PF00248 YP_002339369.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002339370.1 identified by match to protein family HMM PF01361 YP_002339371.1 identified by match to protein family HMM PF03928 YP_002339372.1 identified by match to protein family HMM PF01490; match to protein family HMM PF03222 YP_002339373.1 identified by match to protein family HMM PF00078; match to protein family HMM PF08388 YP_002339374.1 identified by glimmer; putative YP_002339375.1 identified by match to protein family HMM PF02082 YP_002339376.1 identified by glimmer; putative YP_002339378.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress YP_002339379.1 identified by match to protein family HMM PF01638 YP_002339380.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002339381.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894 YP_002339382.1 identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002339383.1 identified by match to protein family HMM PF01638 YP_002339384.1 identified by match to protein family HMM PF01638 YP_002339385.1 identified by match to protein family HMM PF00248 YP_002339387.1 identified by match to protein family HMM PF00657 YP_002339388.1 identified by match to protein family HMM PF00753 YP_002339391.1 identified by glimmer; putative YP_002339392.1 identified by match to protein family HMM PF02567; match to protein family HMM TIGR00654 YP_002339393.1 identified by match to protein family HMM PF00583 YP_002339394.1 identified by match to protein family HMM PF00106 YP_002339397.1 identified by match to protein family HMM PF00501 YP_002339398.1 identified by match to protein family HMM PF02525 YP_002339399.1 identified by match to protein family HMM PF01638 YP_002339401.1 identified by match to protein family HMM PF01022 YP_002339402.1 identified by match to protein family HMM PF00535; match to protein family HMM PF01522 YP_002339403.1 identified by match to protein family HMM PF00535 YP_002339404.1 identified by match to protein family HMM PF01906 YP_002339405.1 identified by match to protein family HMM PF02517 YP_002339406.1 identified by match to protein family HMM PF00440 YP_002339407.1 identified by glimmer; putative YP_002339409.1 identified by match to protein family HMM PF06445 YP_002339410.1 identified by match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002339411.1 identified by match to protein family HMM PF01061 YP_002339412.1 identified by match to protein family HMM PF00005 YP_002339413.1 identified by match to protein family HMM PF06304 YP_002339414.1 identified by match to protein family HMM PF03551 YP_002339415.1 catalyzes the reduction of hydroxylamine to ammonia and water YP_002339416.1 identified by glimmer; putative YP_002339417.1 identified by match to protein family HMM PF00753 YP_002339421.1 identified by glimmer; putative YP_002339422.1 identified by glimmer; putative YP_002339423.1 identified by match to protein family HMM PF03486 YP_002339424.1 identified by match to protein family HMM PF00149 YP_002339425.1 identified by match to protein family HMM PF00027 YP_002339426.1 identified by match to protein family HMM PF04657 YP_002339427.1 identified by match to protein family HMM PF04657 YP_002339428.1 identified by glimmer; putative YP_002339431.1 identified by match to protein family HMM PF08006 YP_002339432.1 identified by match to protein family HMM PF03551 YP_002339433.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02817 YP_002339434.1 identified by match to protein family HMM PF00324 YP_002339435.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710 YP_002339438.1 identified by glimmer; putative YP_002339439.1 identified by glimmer; putative YP_002339440.1 identified by match to protein family HMM PF02585 YP_002339441.1 identified by match to protein family HMM PF08830 YP_002339442.1 identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600 YP_002339443.1 identified by glimmer; putative YP_002339445.1 identified by match to protein family HMM PF01497 YP_002339446.1 identified by match to protein family HMM PF01032 YP_002339447.1 identified by match to protein family HMM PF01032 YP_002339448.1 identified by glimmer; putative YP_002339449.1 identified by match to protein family HMM PF05675 YP_002339452.1 identified by match to protein family HMM PF05163 YP_002339455.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002339456.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002339457.1 identified by match to protein family HMM PF00300 YP_002339458.1 identified by match to protein family HMM PF00583 YP_002339459.1 identified by match to protein family HMM PF00488 YP_002339460.1 identified by match to protein family HMM PF00797 YP_002339461.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181 YP_002339462.1 identified by match to protein family HMM PF00144 YP_002339463.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002339464.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002339465.1 identified by match to protein family HMM PF07690 YP_002339466.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002339467.1 identified by glimmer; putative YP_002339468.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02698 YP_002339469.1 identified by match to protein family HMM PF03009 YP_002339470.1 identified by match to protein family HMM PF01266; match to protein family HMM PF01494 YP_002339471.1 identified by match to protein family HMM PF01022 YP_002339472.1 identified by match to protein family HMM PF00107; match to protein family HMM PF08240 YP_002339473.1 identified by match to protein family HMM PF02696 YP_002339474.1 identified by match to protein family HMM PF00515 YP_002339476.1 identified by match to protein family HMM PF04299 YP_002339477.1 identified by match to protein family HMM PF04229 YP_002339479.1 identified by match to protein family HMM PF01758 YP_002339480.1 identified by match to protein family HMM PF01565; match to protein family HMM PF02913 YP_002339482.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002339486.1 identified by match to protein family HMM PF00801; match to protein family HMM PF01752; match to protein family HMM PF04151; match to protein family HMM PF08453 YP_002339487.1 identified by match to protein family HMM PF02308 YP_002339488.1 identified by match to protein family HMM PF00583 YP_002339490.1 identified by match to protein family HMM PF00903 YP_002339491.1 identified by match to protein family HMM PF00497 YP_002339492.1 identified by match to protein family HMM PF00005 YP_002339493.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002339494.1 identified by match to protein family HMM PF04294 YP_002339497.1 identified by glimmer; putative YP_002339499.1 has 3'-5' exonuclease activity YP_002339500.1 identified by match to protein family HMM PF00313 YP_002339502.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group YP_002339504.1 identified by match to protein family HMM PF00293 YP_002339505.1 identified by match to protein family HMM PF04266 YP_002339507.1 identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451 YP_002339508.1 identified by match to protein family HMM PF00106 YP_002339509.1 identified by match to protein family HMM PF00583 YP_002339510.1 catalyzes the formation of arginine and fumarate from arginosuccinate YP_002339511.1 identified by glimmer; putative YP_002339512.1 identified by match to protein family HMM PF01156 YP_002339513.1 mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase YP_002339514.1 identified by match to protein family HMM PF06196 YP_002339515.1 identified by match to protein family HMM PF00171 YP_002339516.1 identified by glimmer; putative YP_002339519.1 identified by match to protein family HMM PF00589 YP_002339522.1 identified by match to protein family HMM PF00171 YP_002339523.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002339525.1 identified by match to protein family HMM PF00432; match to protein family HMM TIGR01787 YP_002339526.1 identified by match to protein family HMM PF02681 YP_002339527.1 identified by match to protein family HMM PF00892; match to protein family HMM TIGR00688 YP_002339528.1 identified by match to protein family HMM PF06961 YP_002339529.1 identified by glimmer; putative YP_002339531.1 identified by match to protein family HMM PF01883 YP_002339532.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682 YP_002339533.1 identified by match to protein family HMM PF02391 YP_002339534.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_002339535.1 catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways YP_002339536.1 identified by match to protein family HMM PF01226 YP_002339537.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666 YP_002339538.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth YP_002339540.1 identified by match to protein family HMM PF07849 YP_002339541.1 identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591 YP_002339542.1 identified by match to protein family HMM PF03323 YP_002339543.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002339544.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002339545.1 identified by glimmer; putative YP_002339546.1 identified by glimmer; putative YP_002339547.1 identified by glimmer; putative YP_002339548.1 identified by glimmer; putative YP_002339550.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002339551.1 identified by match to protein family HMM PF00496 YP_002339552.1 identified by match to protein family HMM PF00496 YP_002339553.1 identified by glimmer; putative YP_002339554.1 identified by match to protein family HMM PF00496 YP_002339555.1 involved in the transport of C4-dicarboxylates across the membrane YP_002339556.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002339557.1 identified by glimmer; putative YP_002339558.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002339559.1 identified by match to protein family HMM PF00903 YP_002339561.1 identified by match to protein family HMM PF01609 YP_002339563.1 identified by match to protein family HMM PF00005 YP_002339564.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00440 YP_002339565.1 identified by match to protein family HMM PF01408; match to protein family HMM PF02894; match to protein family HMM PF03447 YP_002339566.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002339567.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling YP_002339568.1 identified by match to protein family HMM PF02629 YP_002339569.1 identified by match to protein family HMM PF00089 YP_002339570.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002339571.1 identified by match to protein family HMM TIGR02491 YP_002339572.1 Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates YP_002339573.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX YP_002339574.1 identified by match to protein family HMM PF01521 YP_002339575.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051 YP_002339576.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01476 YP_002339577.1 identified by match to protein family HMM TIGR03090 YP_002339578.1 SASP N; found in forespore compartment YP_002339580.1 3'-5' exonuclease of DNA polymerase III YP_002339581.1 identified by match to protein family HMM PF00085; match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002339582.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002339583.1 Catalyzes the conversion of citrate to isocitrate YP_002339584.1 SASP O; found in forespore compartment YP_002339585.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02764 YP_002339587.1 SASP P; found in forespore compartment YP_002339590.1 identified by match to protein family HMM PF09346 YP_002339591.1 identified by glimmer; putative YP_002339592.1 identified by glimmer; putative YP_002339595.1 identified by match to protein family HMM PF02272; match to protein family HMM PF07973 YP_002339596.1 identified by match to protein family HMM PF00293 YP_002339597.1 identified by glimmer; putative YP_002339599.1 identified by match to protein family HMM PF01381 YP_002339600.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002339601.1 activates fatty acids by binding to coenzyme A YP_002339602.1 identified by match to protein family HMM PF02632 YP_002339603.1 identified by match to protein family HMM PF00501 YP_002339605.1 identified by match to protein family HMM PF00005 YP_002339606.1 identified by match to protein family HMM PF01381 YP_002339608.1 identified by glimmer; putative YP_002339609.1 identified by match to protein family HMM PF05532 YP_002339610.1 identified by match to protein family HMM PF00395 YP_002339611.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_002339613.1 identified by match to protein family HMM PF01510 YP_002339614.1 identified by glimmer; putative YP_002339615.1 identified by match to protein family HMM PF02588 YP_002339616.1 identified by match to protein family HMM PF00903 YP_002339617.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_002339618.1 identified by match to protein family HMM PF02230 YP_002339619.1 identified by match to protein family HMM PF00903 YP_002339620.1 identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; match to protein family HMM TIGR02121 YP_002339622.1 identified by match to protein family HMM PF01645 YP_002339623.1 identified by match to protein family HMM PF00724 YP_002339624.1 identified by match to protein family HMM PF02559 YP_002339625.1 catalyzes the formation of glutamate and formamide from N-formimidoyl-L-glutamate YP_002339626.1 catalyzing the hydrolysis of 4-imidazolone-5-propionate to N-formimidoyl-L-glutamate, the third step in the histidine degradation pathway YP_002339627.1 catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism YP_002339628.1 catalyzes the degradation of histidine to urocanate and ammmonia YP_002339629.1 regulates expression of hut operon by antitermination mechanism; forms a homohexamer; binds both magnesium and L-histidine and then binds RNA sequences within the terminator region and destabilizes the terminator structure YP_002339630.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002339631.1 identified by match to protein family HMM PF01965 YP_002339633.1 identified by glimmer; putative YP_002339636.1 identified by glimmer; putative YP_002339637.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002339639.1 identified by glimmer; putative YP_002339640.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451 YP_002339641.1 identified by match to protein family HMM PF00078; match to protein family HMM PF01844 YP_002339643.1 identified by match to protein family HMM PF01345; match to protein family HMM TIGR01451 YP_002339644.1 identified by match to protein family HMM PF07301 YP_002339645.1 identified by match to protein family HMM PF02683 YP_002339646.1 identified by match to protein family HMM PF00892 YP_002339647.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002339649.1 identified by match to protein family HMM PF00005 YP_002339651.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002339652.1 increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation; inhibited by the antiholin-like proteins lrgAB YP_002339653.1 identified by match to protein family HMM PF04172 YP_002339654.1 identified by match to protein family HMM PF00293 YP_002339655.1 identified by glimmer; putative YP_002339656.1 identified by match to protein family HMM PF01925 YP_002339657.1 identified by glimmer; putative YP_002339658.1 identified by match to protein family HMM PF00395; match to protein family HMM PF01510 YP_002339659.1 identified by glimmer; putative YP_002339661.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002339662.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002339665.1 identified by glimmer; putative YP_002339668.1 identified by match to protein family HMM PF05133 YP_002339669.1 identified by glimmer; putative YP_002339670.1 identified by glimmer; putative YP_002339679.1 identified by glimmer; putative YP_002339680.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_002339681.1 identified by glimmer; putative YP_002339682.1 identified by match to protein family HMM PF03672 YP_002339684.1 catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase YP_002339685.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097 YP_002339686.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01097 YP_002339687.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR02315 YP_002339688.1 identified by match to protein family HMM TIGR01098 YP_002339689.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_002339690.1 identified by match to protein family HMM PF05979 YP_002339691.1 identified by match to protein family HMM PF00239 YP_002339692.1 Represses a number of genes involved in the response to DNA damage YP_002339694.1 identified by match to protein family HMM PF08006 YP_002339695.1 identified by match to protein family HMM PF03551 YP_002339696.1 identified by match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653 YP_002339697.1 identified by match to protein family HMM PF00376 YP_002339698.1 identified by match to protein family HMM PF01053; match to protein family HMM PF06838 YP_002339699.1 identified by match to protein family HMM PF01926; match to protein family HMM TIGR03156 YP_002339700.1 identified by match to protein family HMM PF03458 YP_002339702.1 identified by match to protein family HMM PF00004; match to protein family HMM TIGR02881 YP_002339703.1 identified by match to protein family HMM PF02899 YP_002339705.1 Stimulates the elongation of poly(A) tails YP_002339706.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity YP_002339707.1 identified by glimmer; putative YP_002339708.1 identified by match to protein family HMM PF06347; match to protein family HMM PF06725; match to protein family HMM PF08239 YP_002339709.1 identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427 YP_002339710.1 identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168 YP_002339711.1 identified by match to protein family HMM PF00455; match to protein family HMM PF08220 YP_002339712.1 identified by match to protein family HMM PF00465 YP_002339713.1 identified by match to protein family HMM PF04238 YP_002339715.1 identified by glimmer; putative YP_002339716.1 identified by match to protein family HMM PF00324; match to protein family HMM PF03845; match to protein family HMM TIGR01773 YP_002339717.1 identified by match to protein family HMM PF00704 YP_002339718.1 identified by match to protein family HMM PF00149 YP_002339719.1 identified by match to protein family HMM PF01226; match to protein family HMM TIGR00790 YP_002339720.1 identified by match to protein family HMM PF00216 YP_002339721.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR00003; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525 YP_002339722.1 identified by match to protein family HMM PF00403; match to protein family HMM TIGR00003 YP_002339723.1 identified by match to protein family HMM PF02583 YP_002339725.1 identified by match to protein family HMM PF00756 YP_002339726.1 identified by match to protein family HMM PF00005 YP_002339727.1 identified by match to protein family HMM PF01032 YP_002339728.1 identified by match to protein family HMM PF01032 YP_002339729.1 identified by match to protein family HMM PF01497 YP_002339730.1 identified by match to protein family HMM PF00165; match to protein family HMM PF02805 YP_002339731.1 identified by match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589 YP_002339732.1 identified by match to protein family HMM PF00730; match to protein family HMM PF07934 YP_002339733.1 catalyzes the release of the N-terminal amino acid from a tripeptide YP_002339734.1 identified by match to protein family HMM PF02588 YP_002339735.1 identified by glimmer; putative YP_002339736.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002339737.1 identified by glimmer; putative YP_002339740.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002339741.1 identified by match to protein family HMM PF00155; match to protein family HMM PF00392 YP_002339742.1 identified by glimmer; putative YP_002339743.1 identified by match to protein family HMM PF00388 YP_002339744.1 identified by match to protein family HMM PF01476; match to protein family HMM PF07486 YP_002339745.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002339746.1 identified by match to protein family HMM PF00884 YP_002339749.1 identified by match to protein family HMM PF02275 YP_002339750.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002339751.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002339754.1 identified by match to protein family HMM PF00005 YP_002339755.1 identified by glimmer; putative YP_002339756.1 identified by glimmer; putative YP_002339757.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex YP_002339758.1 This protein performs the mismatch recognition step during the DNA repair process YP_002339761.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A) YP_002339762.1 catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin YP_002339763.1 identified by match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02780 YP_002339764.1 identified by match to protein family HMM PF01244 YP_002339765.1 identified by match to protein family HMM PF04232 YP_002339766.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00282 YP_002339767.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP YP_002339768.1 identified by match to protein family HMM PF00154 YP_002339769.1 identified by match to protein family HMM PF00154; match to protein family HMM TIGR02012 YP_002339770.1 identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00177; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200 YP_002339771.1 identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560 YP_002339775.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002339776.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_002339777.1 identified by match to protein family HMM PF05193 YP_002339778.1 identified by match to protein family HMM PF02653 YP_002339779.1 identified by match to protein family HMM PF02653 YP_002339780.1 identified by match to protein family HMM PF00005 YP_002339781.1 identified by match to protein family HMM PF02608 YP_002339782.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002339783.1 identified by match to protein family HMM PF01580; match to protein family HMM PF09397 YP_002339785.1 identified by match to protein family HMM PF00574 YP_002339786.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_002339787.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis YP_002339788.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive YP_002339789.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde YP_002339790.1 involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme YP_002339791.1 catalyzes the synthesis of dipicolinic acid from dihydroxydipicolinic acid; plays a role in spore heat resistance YP_002339792.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888 YP_002339793.1 identified by match to protein family HMM PF00675; match to protein family HMM PF05193 YP_002339794.1 identified by match to protein family HMM PF01522; match to protein family HMM TIGR02873 YP_002339795.1 identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM TIGR03591 YP_002339796.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence YP_002339797.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities YP_002339798.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs YP_002339799.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock YP_002339800.1 identified by match to protein family HMM PF04456 YP_002339801.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex YP_002339802.1 identified by match to protein family HMM PF01248 YP_002339803.1 identified by match to protein family HMM PF04296 YP_002339804.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination YP_002339805.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins YP_002339806.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity YP_002339807.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro) YP_002339808.1 identified by match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054 YP_002339809.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate YP_002339810.1 identified by match to protein family HMM PF01148 YP_002339811.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate YP_002339812.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs YP_002339813.1 Catalyzes the phosphorylation of UMP to UDP YP_002339814.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu YP_002339815.1 one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit YP_002339816.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor YP_002339817.1 heat shock protein involved in degradation of misfolded proteins YP_002339818.1 heat shock protein involved in degradation of misfolded proteins YP_002339819.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_002339820.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine YP_002339821.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity YP_002339822.1 identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732 YP_002339823.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle YP_002339824.1 catalyzes the interconversion of succinyl-CoA and succinate YP_002339825.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids YP_002339826.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc) YP_002339827.1 identified by match to protein family HMM PF00717; match to protein family HMM TIGR02227 YP_002339828.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site YP_002339829.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA YP_002339830.1 Essential for efficient processing of 16S rRNA YP_002339832.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity YP_002339833.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959 YP_002339834.1 identified by match to protein family HMM PF04297; match to protein family HMM PF08281 YP_002339835.1 identified by match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064 YP_002339836.1 identified by match to protein family HMM PF02463; match to protein family HMM PF06470; match to protein family HMM TIGR02168 YP_002339837.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity YP_002339838.1 carries the fatty acid chain in fatty acid biosynthesis YP_002339839.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002339840.1 identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128 YP_002339841.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY YP_002339842.1 negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria YP_002339843.1 catalyzes branch migration in Holliday junction intermediates YP_002339844.1 identified by match to protein family HMM PF02734; match to protein family HMM TIGR03599 YP_002339845.1 identified by match to protein family HMM PF03780 YP_002339846.1 required for 70S ribosome assembly YP_002339847.1 identified by match to protein family HMM PF04263; match to protein family HMM PF04265; match to protein family HMM TIGR01378 YP_002339848.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate YP_002339849.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity YP_002339850.1 identified by match to protein family HMM PF00069; match to protein family HMM PF03793; match to protein family HMM PF07714 YP_002339851.1 identified by match to protein family HMM PF00481; match to protein family HMM PF07228 YP_002339852.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance YP_002339853.1 identified by match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563 YP_002339854.1 modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth YP_002339855.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002339856.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity YP_002339857.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine YP_002339858.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits YP_002339859.1 Essential for recycling GMP and indirectly, cGMP YP_002339860.1 identified by match to protein family HMM PF04025 YP_002339861.1 identified by match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255 YP_002339862.1 identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494 YP_002339863.1 identified by match to protein family HMM PF05670; match to protein family HMM PF05833 YP_002339864.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002339870.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002339871.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate YP_002339872.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase YP_002339873.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits YP_002339874.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+) YP_002339875.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity YP_002339876.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers YP_002339877.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis YP_002339878.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis YP_002339879.1 identified by match to protein family HMM PF00860; match to protein family HMM TIGR00801 YP_002339880.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity YP_002339881.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005 YP_002339882.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis YP_002339884.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme YP_002339885.1 identified by match to protein family HMM PF05103; match to protein family HMM TIGR03544 YP_002339886.1 identified by match to protein family HMM PF01479 YP_002339887.1 identified by match to protein family HMM PF02325 YP_002339888.1 identified by match to protein family HMM PF04472 YP_002339889.1 identified by match to protein family HMM TIGR00044 YP_002339890.1 identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726 YP_002339891.1 identified by match to protein family HMM PF05239; match to protein family HMM TIGR02888 YP_002339892.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin YP_002339893.1 identified by glimmer; putative YP_002339894.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation YP_002339895.1 identified by match to protein family HMM PF03419; match to protein family HMM TIGR02854 YP_002339896.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function YP_002339897.1 identified by match to protein family HMM PF02491; match to protein family HMM TIGR01174 YP_002339898.1 identified by match to protein family HMM PF03799; match to protein family HMM PF08478 YP_002339899.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_002339900.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002339901.1 identified by match to protein family HMM PF01098; match to protein family HMM TIGR02614; match to protein family HMM TIGR02615 YP_002339902.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation YP_002339903.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan YP_002339904.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate YP_002339905.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793; match to protein family HMM TIGR02214 YP_002339906.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM PF03793 YP_002339907.1 identified by match to protein family HMM PF04977; match to protein family HMM TIGR02209 YP_002339908.1 identified by match to protein family HMM PF01795; match to protein family HMM TIGR00006 YP_002339910.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis YP_002339911.1 identified by match to protein family HMM PF00583 YP_002339912.1 identified by match to protein family HMM PF00249; match to protein family HMM TIGR02894 YP_002339913.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not YP_002339914.1 identified by match to protein family HMM PF02620 YP_002339916.1 identified by match to protein family HMM PF01580 YP_002339917.1 identified by glimmer; putative YP_002339918.1 identified by match to protein family HMM PF01381 YP_002339920.1 identified by match to protein family HMM PF01520 YP_002339921.1 identified by match to protein family HMM TIGR01592 YP_002339923.1 identified by match to protein family HMM PF00589 YP_002339924.1 identified by glimmer; putative YP_002339926.1 identified by glimmer; putative YP_002339928.1 identified by match to protein family HMM TIGR01665 YP_002339931.1 identified by match to protein family HMM TIGR01760 YP_002339934.1 identified by match to protein family HMM TIGR01603 YP_002339936.1 identified by match to protein family HMM TIGR01725 YP_002339937.1 identified by match to protein family HMM TIGR01563 YP_002339938.1 identified by match to protein family HMM TIGR01560 YP_002339939.1 identified by match to protein family HMM PF05065; match to protein family HMM TIGR01554 YP_002339940.1 identified by match to protein family HMM PF00574 YP_002339941.1 identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537 YP_002339942.1 identified by match to protein family HMM PF03354 YP_002339943.1 identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558 YP_002339945.1 identified by glimmer; putative YP_002339946.1 identified by match to protein family HMM PF00589 YP_002339947.1 identified by match to protein family HMM TIGR01637 YP_002339948.1 identified by glimmer; putative YP_002339949.1 identified by glimmer; putative YP_002339950.1 identified by glimmer; putative YP_002339951.1 identified by glimmer; putative YP_002339952.1 identified by glimmer; putative YP_002339954.1 identified by match to protein family HMM PF09643; match to protein family HMM TIGR01671 YP_002339955.1 identified by match to protein family HMM PF03819 YP_002339957.1 identified by glimmer; putative YP_002339958.1 identified by glimmer; putative YP_002339959.1 identified by glimmer; putative YP_002339960.1 identified by match to protein family HMM PF01695 YP_002339961.1 identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446 YP_002339962.1 identified by glimmer; putative YP_002339964.1 identified by match to protein family HMM PF01381 YP_002339965.1 identified by match to protein family HMM PF01381 YP_002339966.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002339967.1 identified by glimmer; putative YP_002339969.1 identified by match to protein family HMM PF01381 YP_002339973.1 identified by match to protein family HMM PF00589 YP_002339974.1 identified by match to protein family HMM PF05636 YP_002339975.1 identified by match to protein family HMM PF05362 YP_002339976.1 identified by match to protein family HMM PF01734 YP_002339977.1 identified by match to protein family HMM PF07670; match to protein family HMM TIGR02871 YP_002339978.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA YP_002339979.1 identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095 YP_002339981.1 identified by match to protein family HMM PF00665 YP_002339984.1 identified by match to protein family HMM PF07050 YP_002339985.1 identified by match to protein family HMM PF00300 YP_002339988.1 identified by match to protein family HMM PF00188 YP_002339989.1 identified by match to protein family HMM PF08868 YP_002339991.1 identified by match to protein family HMM PF00078 YP_002339993.1 identified by match to protein family HMM PF09678; match to protein family HMM TIGR02737 YP_002339994.1 identified by match to protein family HMM PF03626; match to protein family HMM TIGR02908 YP_002339995.1 identified by match to protein family HMM PF00510 YP_002339996.1 identified by match to protein family HMM PF00115; match to protein family HMM TIGR02891 YP_002339997.1 identified by match to protein family HMM PF00034; match to protein family HMM PF00116; match to protein family HMM PF02790; match to protein family HMM TIGR02866 YP_002339998.1 converts protoheme IX and farnesyl diphosphate to heme O YP_002339999.1 identified by match to protein family HMM PF02628 YP_002340000.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate YP_002340001.1 identified by glimmer; putative YP_002340002.1 identified by match to protein family HMM PF01098 YP_002340003.1 depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; putative ligand binding protein YP_002340005.1 identified by match to protein family HMM PF02562 YP_002340006.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF01243 YP_002340008.1 identified by glimmer; putative YP_002340010.1 identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394 YP_002340011.1 identified by glimmer; putative YP_002340012.1 identified by match to protein family HMM PF00459 YP_002340014.1 identified by match to protein family HMM PF06335 YP_002340015.1 identified by match to protein family HMM PF05256 YP_002340016.1 identified by match to protein family HMM PF01212; match to protein family HMM PF01276; match to protein family HMM PF03711 YP_002340017.1 involved in assembly of spore coat proteins such as GerQ by catalyzing epsilon-(gamma-glutamyl)lysine cross links YP_002340018.1 identified by glimmer; putative YP_002340020.1 identified by glimmer; putative YP_002340022.1 identified by glimmer; putative YP_002340023.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_002340024.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_002340025.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002340026.1 identified by match to protein family HMM PF00676; match to protein family HMM TIGR03181 YP_002340027.1 identified by glimmer; putative YP_002340028.1 identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732 YP_002340029.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+) YP_002340030.1 identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002340031.1 identified by match to protein family HMM PF07288 YP_002340032.1 identified by match to protein family HMM PF00753; match to protein family HMM PF07521; match to protein family HMM TIGR00649 YP_002340033.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254 YP_002340035.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01891 YP_002340036.1 identified by match to protein family HMM PF00132; match to protein family HMM PF08503; match to protein family HMM TIGR03532 YP_002340037.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002340038.1 identified by match to protein family HMM PF00571 YP_002340040.1 identified by match to protein family HMM PF04308 YP_002340041.1 identified by glimmer; putative YP_002340042.1 identified by match to protein family HMM PF08796 YP_002340043.1 identified by match to protein family HMM PF00462; match to protein family HMM TIGR02196 YP_002340044.1 identified by glimmer; putative YP_002340046.1 identified by match to protein family HMM PF00563 YP_002340047.1 identified by match to protein family HMM PF00106 YP_002340048.1 identified by match to protein family HMM PF00149 YP_002340049.1 identified by glimmer; putative YP_002340050.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate YP_002340051.1 identified by match to protein family HMM PF02541 YP_002340054.1 identified by glimmer; putative YP_002340056.1 identified by glimmer; putative YP_002340057.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002340060.1 identified by match to protein family HMM PF03551 YP_002340061.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine YP_002340065.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002340066.1 identified by glimmer; putative YP_002340067.1 identified by match to protein family HMM PF00155 YP_002340068.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002340069.1 identified by glimmer; putative YP_002340070.1 identified by match to protein family HMM PF00528 YP_002340071.1 identified by match to protein family HMM PF00528 YP_002340072.1 identified by match to protein family HMM PF01547 YP_002340073.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02903 YP_002340074.1 identified by match to protein family HMM PF00128 YP_002340075.1 identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402 YP_002340076.1 identified by match to protein family HMM PF00106 YP_002340077.1 identified by glimmer; putative YP_002340078.1 identified by match to protein family HMM PF06271 YP_002340083.1 identified by match to protein family HMM PF02463 YP_002340084.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis YP_002340085.1 identified by match to protein family HMM PF00293 YP_002340086.1 identified by glimmer; putative YP_002340087.1 identified by glimmer; putative YP_002340090.1 identified by match to protein family HMM PF03551 YP_002340091.1 catalyzes the formation of acetoacetate from 3-hydroxybutyrate YP_002340093.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway YP_002340094.1 phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway YP_002340095.1 identified by match to protein family HMM PF00078 YP_002340096.1 identified by match to protein family HMM PF00795 YP_002340097.1 produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however YP_002340098.1 converts 2,3-diketo-5-methylthiopentyl-1-phosphate into 2-hydroxy 3-keto-5-methylthiopentenyl-1-phosphate; involved in methionine salvage YP_002340099.1 converts 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate to 1,2-dihydroxy-3-keto-5-methylthiopentene; involved in methionine salvage YP_002340100.1 converts methylthioribulose-1-phosphate into 2,3-diketo-5-methylthiopentyl-1-phosphate; involved in methionine salvage YP_002340101.1 identified by match to protein family HMM PF03079; match to protein family HMM PF07883 YP_002340102.1 identified by glimmer; putative YP_002340103.1 identified by glimmer; putative YP_002340104.1 identified by match to protein family HMM PF03446 YP_002340105.1 identified by match to protein family HMM PF00144 YP_002340106.1 identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 YP_002340107.1 identified by match to protein family HMM PF00881 YP_002340108.1 identified by glimmer; putative YP_002340109.1 identified by glimmer; putative YP_002340110.1 identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417 YP_002340111.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_002340112.1 identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830; match to protein family HMM TIGR02002 YP_002340113.1 identified by match to protein family HMM PF00874; match to protein family HMM PF03123 YP_002340114.1 identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002340115.1 identified by match to protein family HMM PF07702 YP_002340116.1 catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate YP_002340117.1 identified by match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR00221 YP_002340118.1 identified by match to protein family HMM PF00753 YP_002340119.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpA; forms a homodimer YP_002340120.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB YP_002340121.1 identified by match to protein family HMM PF03745 YP_002340122.1 identified by match to protein family HMM PF00583 YP_002340123.1 identified by glimmer; putative YP_002340124.1 identified by match to protein family HMM PF00160 YP_002340125.1 identified by match to protein family HMM PF06207 YP_002340126.1 identified by match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002340127.1 identified by match to protein family HMM PF03323 YP_002340129.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839 YP_002340130.1 identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845 YP_002340131.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838 YP_002340134.1 identified by glimmer; putative YP_002340135.1 identified by match to protein family HMM PF00209 YP_002340136.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore. YP_002340137.1 binds to sigma F preventing its association with RNA polymerase during sporulation YP_002340138.1 identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; match to protein family HMM TIGR02886 YP_002340139.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943 YP_002340140.1 identified by match to protein family HMM PF00392; match to protein family HMM PF02082 YP_002340141.1 identified by match to protein family HMM PF00005 YP_002340143.1 identified by glimmer; putative YP_002340144.1 identified by glimmer; putative YP_002340145.1 identified by match to protein family HMM PF01047 YP_002340146.1 identified by match to protein family HMM PF04402 YP_002340147.1 identified by match to protein family HMM PF00860; match to protein family HMM PF00916 YP_002340148.1 identified by match to protein family HMM PF01544; match to protein family HMM TIGR00383 YP_002340149.1 Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway YP_002340150.1 catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation YP_002340151.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose YP_002340153.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs YP_002340155.1 identified by match to protein family HMM PF01475 YP_002340156.1 identified by match to protein family HMM PF01944; match to protein family HMM TIGR02831 YP_002340157.1 identified by match to protein family HMM PF00583 YP_002340158.1 identified by match to protein family HMM PF00293 YP_002340159.1 identified by glimmer; putative YP_002340160.1 identified by match to protein family HMM PF00248 YP_002340161.1 identified by match to protein family HMM PF00248 YP_002340162.1 identified by match to protein family HMM PF04229 YP_002340164.1 identified by match to protein family HMM PF00149; match to protein family HMM PF02872 YP_002340166.1 identified by match to protein family HMM PF00561 YP_002340167.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM PF06808 YP_002340168.1 identified by match to protein family HMM PF00356 YP_002340169.1 identified by match to protein family HMM PF00583 YP_002340172.1 identified by match to protein family HMM PF09360 YP_002340173.1 identified by match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326 YP_002340174.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine YP_002340175.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II; functions in riboflavin synthesis; converts GTP to 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine; converts ribulose 5-phopshate to 3,4-dihydroxy-2-butanone 4-phosphate YP_002340176.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not YP_002340178.1 catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine YP_002340179.1 identified by match to protein family HMM PF05401; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR02072 YP_002340180.1 identified by match to protein family HMM PF00561 YP_002340181.1 catalyzes the formation of 8-amino-7-oxononanoate from 6-carboxyhexanoyl-CoA and L-alanine YP_002340182.1 DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium YP_002340183.1 catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate YP_002340184.1 identified by glimmer; putative YP_002340185.1 identified by glimmer; putative YP_002340186.1 identified by match to protein family HMM PF03553; match to protein family HMM PF03600; match to protein family HMM TIGR00931 YP_002340187.1 in Escherichia coli this is a periplasmic enzyme while in gram positive organisms it may be anchored at the cell surface; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate YP_002340188.1 identified by match to protein family HMM PF00657 YP_002340189.1 identified by match to protein family HMM PF01047 YP_002340190.1 identified by glimmer; putative YP_002340191.1 identified by glimmer; putative YP_002340192.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation YP_002340193.1 identified by match to protein family HMM PF00202; match to protein family HMM TIGR00707 YP_002340194.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate YP_002340195.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate YP_002340196.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate YP_002340197.1 identified by glimmer; putative YP_002340198.1 identified by match to protein family HMM PF00106; match to protein family HMM PF08659 YP_002340199.1 identified by match to protein family HMM PF00753 YP_002340200.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate YP_002340201.1 identified by match to protein family HMM PF03313; match to protein family HMM TIGR00718 YP_002340202.1 identified by match to protein family HMM PF01842; match to protein family HMM PF03315; match to protein family HMM TIGR00719 YP_002340203.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002340204.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions YP_002340205.1 identified by glimmer; putative YP_002340206.1 identified by glimmer; putative YP_002340207.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function YP_002340208.1 identified by match to protein family HMM PF01546; match to protein family HMM PF07687; match to protein family HMM TIGR01883 YP_002340209.1 identified by match to protein family HMM PF00583 YP_002340210.1 identified by glimmer; putative YP_002340211.1 identified by match to protein family HMM PF03734 YP_002340212.1 identified by match to protein family HMM PF06081 YP_002340213.1 identified by match to protein family HMM PF00005 YP_002340214.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726 YP_002340215.1 identified by match to protein family HMM PF00497; match to protein family HMM PF04069 YP_002340216.1 identified by match to protein family HMM PF06491 YP_002340217.1 identified by match to protein family HMM PF00293 YP_002340218.1 identified by match to protein family HMM PF04239 YP_002340219.1 identified by match to protein family HMM PF01098 YP_002340220.1 identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817 YP_002340221.1 identified by match to protein family HMM PF02779; match to protein family HMM PF02780 YP_002340222.1 identified by match to protein family HMM PF00676 YP_002340223.1 E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide YP_002340224.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate YP_002340225.1 identified by match to protein family HMM PF00208; match to protein family HMM PF02812 YP_002340226.1 catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate YP_002340227.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00989; match to protein family HMM PF02954; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_002340229.1 identified by match to protein family HMM PF03009 YP_002340231.1 identified by match to protein family HMM PF00072; match to protein family HMM PF08769; match to protein family HMM TIGR02875 YP_002340233.1 identified by match to protein family HMM PF00595; match to protein family HMM PF05580; match to protein family HMM TIGR02860 YP_002340234.1 identified by match to protein family HMM PF02463; match to protein family HMM TIGR00634 YP_002340235.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes YP_002340236.1 identified by match to protein family HMM PF01479; match to protein family HMM PF01728; match to protein family HMM TIGR00478 YP_002340237.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate YP_002340238.1 identified by match to protein family HMM PF00348 YP_002340239.1 catalyzes the bidirectional exonucleolytic cleavage of DNA YP_002340240.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides YP_002340241.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate YP_002340242.1 Regulates rRNA biosynthesis by transcriptional antitermination YP_002340243.1 identified by match to protein family HMM PF03780 YP_002340244.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002340245.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism YP_002340247.1 identified by match to protein family HMM TIGR02830 YP_002340248.1 identified by match to protein family HMM PF09581; match to protein family HMM TIGR02896 YP_002340249.1 identified by match to protein family HMM PF09546; match to protein family HMM TIGR02829 YP_002340250.1 identified by match to protein family HMM PF09555; match to protein family HMM TIGR02849 YP_002340251.1 identified by match to protein family HMM PF06686; match to protein family HMM TIGR02848 YP_002340252.1 necessary for complete engulfment of forespore YP_002340253.1 identified by match to protein family HMM TIGR02858 YP_002340256.1 identified by glimmer; putative YP_002340257.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA YP_002340258.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002340259.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis YP_002340261.1 identified by match to protein family HMM PF07136 YP_002340263.1 involved in manganese homeostasis; activates the transcription of the mntABCD operon YP_002340264.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR00620 YP_002340265.1 identified by match to protein family HMM PF03551 YP_002340268.1 identified by glimmer; putative YP_002340269.1 identified by match to protein family HMM PF03099 YP_002340270.1 identified by match to protein family HMM PF00581 YP_002340271.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002340272.1 identified by match to protein family HMM PF00440 YP_002340273.1 identified by match to protein family HMM PF00893 YP_002340274.1 identified by match to protein family HMM PF00893 YP_002340275.1 identified by glimmer; putative YP_002340276.1 identified by glimmer; putative YP_002340277.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002340282.1 identified by match to protein family HMM PF00005 YP_002340283.1 identified by match to protein family HMM PF00392 YP_002340286.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein YP_002340287.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein YP_002340288.1 catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein YP_002340289.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_002340291.1 identified by glimmer; putative YP_002340292.1 identified by glimmer; putative YP_002340295.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis YP_002340296.1 identified by glimmer; putative YP_002340297.1 identified by match to protein family HMM PF03171 YP_002340299.1 identified by match to protein family HMM PF07963 YP_002340300.1 identified by glimmer; putative YP_002340301.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002340302.1 identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532 YP_002340303.1 identified by match to protein family HMM PF00482 YP_002340304.1 identified by match to protein family HMM PF00437 YP_002340307.1 identified by match to protein family HMM PF00375 YP_002340308.1 identified by glimmer; putative YP_002340309.1 identified by glimmer; putative YP_002340311.1 identified by glimmer; putative YP_002340312.1 identified by glimmer; putative YP_002340313.1 identified by glimmer; putative YP_002340314.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis YP_002340315.1 identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607; match to protein family HMM PF02965; match to protein family HMM TIGR02082 YP_002340316.1 catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions YP_002340317.1 catalyzes the formation of cysteine from cystathionine; in B. subtilis also has O-acetylhomoserine thiolyase activity YP_002340318.1 catalyzes the formation of L-homocysteine from cystathionine YP_002340319.1 identified by match to protein family HMM PF00857 YP_002340320.1 identified by match to protein family HMM PF01022 YP_002340321.1 identified by match to protein family HMM PF02636 YP_002340322.1 identified by match to protein family HMM PF00753 YP_002340324.1 identified by match to protein family HMM PF00480; match to protein family HMM TIGR00744 YP_002340325.1 identified by match to protein family HMM PF06014 YP_002340326.1 identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727 YP_002340327.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_002340328.1 identified by match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM PF02878 YP_002340329.1 identified by match to protein family HMM PF01895; match to protein family HMM TIGR02135 YP_002340330.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation YP_002340331.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974 YP_002340332.1 identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138 YP_002340333.1 identified by match to protein family HMM TIGR02136 YP_002340334.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002340335.1 identified by match to protein family HMM PF07690 YP_002340336.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_002340337.1 identified by match to protein family HMM PF06691 YP_002340339.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis YP_002340340.1 identified by match to protein family HMM PF01475 YP_002340341.1 identified by match to protein family HMM PF00950; match to protein family HMM PF01032 YP_002340342.1 identified by match to protein family HMM PF00005 YP_002340343.1 identified by match to protein family HMM PF02588 YP_002340345.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues YP_002340346.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271 YP_002340347.1 identified by glimmer; putative YP_002340349.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway YP_002340350.1 identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486 YP_002340351.1 identified by match to protein family HMM PF04816 YP_002340352.1 identified by match to protein family HMM PF00034 YP_002340353.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium YP_002340354.1 synthesizes RNA primers at the replication forks YP_002340355.1 identified by glimmer; putative YP_002340356.1 identified by match to protein family HMM PF03618 YP_002340357.1 identified by match to protein family HMM PF00571; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002340358.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA YP_002340360.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome YP_002340361.1 Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis YP_002340362.1 identified by match to protein family HMM PF01219 YP_002340363.1 identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043 YP_002340364.1 identified by match to protein family HMM PF01966; match to protein family HMM PF07697; match to protein family HMM PF07698; match to protein family HMM TIGR00277 YP_002340365.1 identified by match to protein family HMM PF02562 YP_002340366.1 identified by match to protein family HMM PF06898; match to protein family HMM TIGR02876 YP_002340367.1 identified by match to protein family HMM PF07241; match to protein family HMM TIGR02856 YP_002340368.1 identified by match to protein family HMM PF09424 YP_002340369.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA YP_002340370.1 identified by match to protein family HMM PF00919; match to protein family HMM PF01938; match to protein family HMM PF04055; match to protein family HMM TIGR00089; match to protein family HMM TIGR01579 YP_002340371.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase YP_002340372.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype YP_002340373.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion YP_002340374.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria YP_002340375.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor YP_002340376.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons YP_002340377.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III YP_002340378.1 identified by match to protein family HMM PF01638 YP_002340379.1 binds to the ribosome on the universally-conserved alpha-sarcin loop YP_002340381.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination YP_002340382.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase YP_002340383.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA YP_002340385.1 identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361 YP_002340386.1 identified by match to protein family HMM PF00383; match to protein family HMM TIGR02571 YP_002340387.1 identified by match to protein family HMM PF00633; match to protein family HMM TIGR00426 YP_002340388.1 may be involved in regulation of competence genes YP_002340389.1 identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002340390.1 identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090 YP_002340391.1 identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277; match to protein family HMM TIGR00488 YP_002340392.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria YP_002340393.1 identified by match to protein family HMM PF01985; match to protein family HMM TIGR00253 YP_002340394.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate YP_002340395.1 in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis YP_002340396.1 identified by match to protein family HMM PF09419; match to protein family HMM TIGR01662; match to protein family HMM TIGR01668 YP_002340397.1 identified by match to protein family HMM PF08970 YP_002340398.1 catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine YP_002340399.1 sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment YP_002340401.1 identified by match to protein family HMM PF03413 YP_002340402.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif YP_002340403.1 identified by match to protein family HMM PF04607 YP_002340405.1 identified by match to protein family HMM PF00245 YP_002340407.1 identified by match to protein family HMM PF00583 YP_002340408.1 identified by match to protein family HMM PF00561 YP_002340409.1 identified by match to protein family HMM PF04173; match to protein family HMM PF07681 YP_002340411.1 identified by match to protein family HMM PF00300 YP_002340412.1 identified by glimmer; putative YP_002340413.1 identified by glimmer; putative YP_002340414.1 identified by match to protein family HMM PF07676 YP_002340415.1 identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF05922 YP_002340416.1 phenylalanine 4-hydroxylase; catalyzes the formation of 4a-hydroxytetrahydrobiopterin and tyrosine from phenylalanine and tetrahydrobiopterin YP_002340417.1 identified by match to protein family HMM PF01329 YP_002340418.1 identified by match to protein family HMM PF00903 YP_002340419.1 identified by match to protein family HMM PF07681 YP_002340420.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002340421.1 identified by match to protein family HMM PF01575 YP_002340422.1 identified by glimmer; putative YP_002340423.1 identified by match to protein family HMM PF00583 YP_002340424.1 identified by glimmer; putative YP_002340425.1 identified by match to protein family HMM PF00583 YP_002340427.1 identified by match to protein family HMM PF00005 YP_002340428.1 identified by match to protein family HMM PF01032 YP_002340429.1 identified by match to protein family HMM PF01497 YP_002340431.1 identified by match to protein family HMM PF00465 YP_002340432.1 catalyzes the formation of L-homocysteine from cystathionine YP_002340433.1 identified by match to protein family HMM PF00291 YP_002340434.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine YP_002340435.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002340437.1 identified by match to protein family HMM PF07423 YP_002340438.1 identified by match to protein family HMM PF00905; match to protein family HMM PF03717 YP_002340439.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus YP_002340440.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor YP_002340441.1 identified by match to protein family HMM PF01136 YP_002340442.1 identified by match to protein family HMM PF01136 YP_002340443.1 identified by match to protein family HMM PF01596; match to protein family HMM PF02390 YP_002340444.1 identified by match to protein family HMM PF02618; match to protein family HMM TIGR00247 YP_002340445.1 identified by match to protein family HMM PF06949 YP_002340446.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function YP_002340447.1 identified by match to protein family HMM PF06135 YP_002340448.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002340450.1 identified by match to protein family HMM PF01594 YP_002340451.1 identified by glimmer; putative YP_002340452.1 identified by glimmer; putative YP_002340454.1 identified by match to protein family HMM TIGR01448 YP_002340455.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002340456.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs YP_002340457.1 identified by match to protein family HMM PF00266 YP_002340458.1 identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738 YP_002340459.1 identified by match to protein family HMM PF00004 YP_002340460.1 identified by match to protein family HMM TIGR02894 YP_002340461.1 identified by match to protein family HMM PF00899 YP_002340462.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes YP_002340463.1 catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG YP_002340465.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002340467.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine YP_002340468.1 identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691 YP_002340469.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis YP_002340470.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644 YP_002340471.1 identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297 YP_002340472.1 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF YP_002340474.1 identified by match to protein family HMM PF01554; match to protein family HMM PF01943; match to protein family HMM PF03023; match to protein family HMM TIGR02900 YP_002340475.1 identified by match to protein family HMM PF04239 YP_002340477.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex YP_002340478.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr) YP_002340479.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step YP_002340481.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration YP_002340482.1 plays an essential role in ATP-dependent branch migration of the Holliday junction YP_002340483.1 identified by match to protein family HMM PF08955; match to protein family HMM PF08977 YP_002340484.1 identified by glimmer; putative YP_002340485.1 identified by match to protein family HMM PF09580 YP_002340486.1 identified by match to protein family HMM PF01476; match to protein family HMM TIGR02899 YP_002340487.1 identified by glimmer; putative YP_002340488.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate YP_002340489.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide YP_002340490.1 catalyzes the formation of oxaloacetate from L-aspartate YP_002340491.1 catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis YP_002340492.1 identified by match to protein family HMM PF02829; match to protein family HMM PF08279 YP_002340493.1 identified by match to protein family HMM PF03473; match to protein family HMM PF03475 YP_002340494.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis YP_002340495.1 identified by match to protein family HMM PF02687 YP_002340496.1 identified by match to protein family HMM PF02687 YP_002340497.1 identified by match to protein family HMM PF00005 YP_002340498.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002340499.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002340500.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication YP_002340502.1 involved in the peptidyltransferase reaction during translation YP_002340503.1 identified by match to protein family HMM PF04327 YP_002340504.1 identified by match to protein family HMM PF00829; match to protein family HMM TIGR00061 YP_002340505.1 identified by match to protein family HMM TIGR00757 YP_002340506.1 identified by match to protein family HMM PF02163 YP_002340507.1 identified by match to protein family HMM PF01551 YP_002340508.1 identified by match to protein family HMM PF01656; match to protein family HMM TIGR01968 YP_002340509.1 blocks the formation of polar Z-ring septums YP_002340510.1 identified by match to protein family HMM PF04093; match to protein family HMM TIGR03426 YP_002340511.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall YP_002340512.1 functions in MreBCD complex in some organisms YP_002340513.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase YP_002340514.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell YP_002340516.1 identified by match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499 YP_002340517.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain YP_002340518.1 identified by glimmer; putative YP_002340519.1 identified by glimmer; putative YP_002340520.1 identified by glimmer; putative YP_002340521.1 identified by match to protein family HMM TIGR02904 YP_002340522.1 identified by match to protein family HMM PF01476; match to protein family HMM TIGR02907 YP_002340523.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway YP_002340524.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate YP_002340525.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis YP_002340526.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis YP_002340527.1 identified by match to protein family HMM PF01578 YP_002340528.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins YP_002340529.1 identified by match to protein family HMM PF01047 YP_002340530.1 identified by match to protein family HMM PF02566; match to protein family HMM TIGR03561 YP_002340531.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential YP_002340532.1 identified by match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763 YP_002340533.1 identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF05362; match to protein family HMM TIGR02902 YP_002340534.1 binds and unfolds substrates as part of the ClpXP protease YP_002340535.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer YP_002340537.1 identified by glimmer; putative YP_002340543.1 identified by glimmer; putative YP_002340544.1 identified by match to protein family HMM PF00149; match to protein family HMM TIGR00040 YP_002340545.1 hydrolyzes non-standard nucleotides such as xanthine and inosine YP_002340546.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs YP_002340548.1 converts L-glutamate to D-glutamate, a component of peptidoglycan YP_002340549.1 identified by match to protein family HMM PF07690 YP_002340550.1 identified by match to protein family HMM PF01965 YP_002340551.1 identified by match to protein family HMM PF00440 YP_002340552.1 identified by match to protein family HMM PF01965 YP_002340553.1 identified by glimmer; putative YP_002340554.1 identified by match to protein family HMM PF00196; match to protein family HMM PF08281 YP_002340555.1 identified by match to protein family HMM PF00860 YP_002340556.1 metallo-dependent hydrolase superfamily; deaminase with metallo-dependent hydrolase domain YP_002340557.1 identified by match to protein family HMM PF04024 YP_002340558.1 identified by match to protein family HMM PF01381; match to protein family HMM PF07883 YP_002340560.1 identified by match to protein family HMM PF00230 YP_002340561.1 identified by match to protein family HMM PF02082 YP_002340563.1 identified by match to protein family HMM PF00005 YP_002340564.1 identified by match to protein family HMM PF03767; match to protein family HMM TIGR01533 YP_002340565.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine YP_002340566.1 With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine. YP_002340567.1 identified by match to protein family HMM PF02557 YP_002340568.1 identified by match to protein family HMM PF03061 YP_002340569.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase YP_002340570.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol YP_002340571.1 identified by match to protein family HMM TIGR02046 YP_002340573.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision YP_002340574.1 identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068 YP_002340575.1 identified by match to protein family HMM PF00766; match to protein family HMM PF01012 YP_002340576.1 identified by match to protein family HMM PF01012 YP_002340577.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA YP_002340578.1 identified by match to protein family HMM PF00440; match to protein family HMM PF08359 YP_002340579.1 activates fatty acids by binding to coenzyme A YP_002340580.1 identified by match to protein family HMM PF01391 YP_002340581.1 identified by match to protein family HMM PF05163 YP_002340585.1 identified by glimmer; putative YP_002340586.1 identified by match to protein family HMM PF00005 YP_002340587.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002340588.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002340589.1 identified by glimmer; putative YP_002340592.1 identified by match to protein family HMM PF00999 YP_002340594.1 iron regulated; catalyzes the release of heme from hemoglobin allowing bacterial pathogens to use the host heme as an iron source YP_002340595.1 identified by match to protein family HMM PF07170; match to protein family HMM TIGR03064 YP_002340596.1 identified by match to protein family HMM PF00005 YP_002340597.1 identified by match to protein family HMM PF01032 YP_002340598.1 identified by match to protein family HMM PF01497; match to protein family HMM TIGR03659 YP_002340599.1 identified by match to protein family HMM PF05031; match to protein family HMM TIGR03063 YP_002340600.1 identified by match to protein family HMM PF05031; match to protein family HMM TIGR03063; match to protein family HMM TIGR03656 YP_002340601.1 identified by match to protein family HMM PF05525; match to protein family HMM TIGR00796 YP_002340602.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002340603.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange YP_002340604.1 identified by match to protein family HMM PF02811 YP_002340605.1 identified by match to protein family HMM PF02674 YP_002340606.1 identified by match to protein family HMM PF05164 YP_002340607.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids YP_002340609.1 identified by glimmer; putative YP_002340610.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002340611.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily YP_002340612.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily YP_002340613.1 identified by match to protein family HMM PF00588; match to protein family HMM PF08032 YP_002340614.1 identified by match to protein family HMM TIGR03092 YP_002340615.1 identified by match to protein family HMM PF01966 YP_002340616.1 identified by match to protein family HMM PF02517 YP_002340617.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711 YP_002340619.1 identified by match to protein family HMM PF00440 YP_002340620.1 identified by match to protein family HMM PF05343 YP_002340621.1 identified by match to protein family HMM PF08761 YP_002340622.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit YP_002340623.1 identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001 YP_002340624.1 IF-3 has several functions that are required and promote translation initiation including; preventing association of 70S by binding to 30S; monitoring codon-anticodon interactions by promoting disassociation of fMet-tRNA(fMet) from initiation complexes formed on leaderless mRNAs or incorrectly bound noninitiatior tRNAs and complexes with noncanonical start sites; stimulates codon-anticodon interactions at P-site; involved in moving mRNA to the P-site; and in recycling subunits YP_002340625.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr) YP_002340626.1 identified by match to protein family HMM PF08812; match to protein family HMM TIGR02834 YP_002340627.1 Primosomal protein that may act to load helicase DnaC during DNA replication YP_002340628.1 identified by match to protein family HMM PF07261 YP_002340629.1 identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244 YP_002340630.1 Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine YP_002340631.1 identified by glimmer; putative YP_002340632.1 NADP-dependent; catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; active during gluconeogenesis YP_002340633.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis YP_002340634.1 identified by match to protein family HMM PF02659; match to protein family HMM TIGR02840 YP_002340635.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases YP_002340636.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair YP_002340637.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM PF08448; match to protein family HMM TIGR00229 YP_002340638.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002340640.1 identified by glimmer; putative YP_002340641.1 identified by match to protein family HMM PF01575 YP_002340642.1 Catalyzes the reversible oxidation of malate to oxaloacetate YP_002340643.1 Converts isocitrate to alpha ketoglutarate YP_002340644.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate YP_002340645.1 identified by match to protein family HMM PF04284 YP_002340646.1 identified by match to protein family HMM PF01594; match to protein family HMM TIGR02872 YP_002340647.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein YP_002340648.1 catalyzes the formation of phosphoenolpyruvate from pyruvate YP_002340649.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis YP_002340650.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein YP_002340651.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits YP_002340652.1 identified by match to protein family HMM PF00392 YP_002340653.1 identified by match to protein family HMM PF00390; match to protein family HMM PF03949 YP_002340654.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria. YP_002340657.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_002340662.1 identified by match to protein family HMM PF00571; match to protein family HMM PF03061; match to protein family HMM PF07085 YP_002340663.1 identified by glimmer; putative YP_002340664.1 catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins YP_002340665.1 identified by match to protein family HMM PF00557; match to protein family HMM PF01321 YP_002340670.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002340672.1 identified by match to protein family HMM PF00583 YP_002340673.1 identified by match to protein family HMM PF07883 YP_002340675.1 identified by match to protein family HMM PF01262; match to protein family HMM PF01488; match to protein family HMM PF05222; match to protein family HMM TIGR00518 YP_002340676.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis YP_002340677.1 identified by match to protein family HMM PF00582 YP_002340678.1 identified by glimmer; putative YP_002340679.1 identified by match to protein family HMM PF01022 YP_002340680.1 identified by match to protein family HMM PF07690 YP_002340681.1 identified by match to protein family HMM PF05147 YP_002340682.1 identified by match to protein family HMM PF00583 YP_002340686.1 catalyzes the formation of arginine from (N-L-arginino)succinate YP_002340687.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming YP_002340691.1 identified by match to protein family HMM PF02588 YP_002340693.1 identified by glimmer; putative YP_002340694.1 identified by match to protein family HMM PF00293 YP_002340695.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA YP_002340696.1 identified by match to protein family HMM PF02384 YP_002340697.1 identified by match to protein family HMM PF00578; match to protein family HMM PF08534 YP_002340698.1 identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874 YP_002340700.1 catalyzes the phosphorylation of NAD to NADP YP_002340701.1 identified by match to protein family HMM PF07969 YP_002340702.1 identified by match to protein family HMM PF00903; match to protein family HMM PF06983 YP_002340703.1 identified by match to protein family HMM PF00501 YP_002340704.1 identified by match to protein family HMM PF00269 YP_002340705.1 Required for the synthesis of the thiazole moiety YP_002340706.1 identified by match to protein family HMM PF00266 YP_002340707.1 acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation YP_002340708.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002340709.1 identified by match to protein family HMM PF00892 YP_002340710.1 identified by match to protein family HMM PF00440 YP_002340711.1 identified by match to protein family HMM PF01590 YP_002340712.1 catalyzes the formation of methanethiol and 2-ocobutanoate from L-methionine YP_002340713.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination YP_002340714.1 identified by glimmer; putative YP_002340715.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002340716.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_002340717.1 identified by glimmer; putative YP_002340718.1 identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937 YP_002340720.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA YP_002340722.1 identified by match to protein family HMM PF00571; match to protein family HMM PF01842 YP_002340723.1 identified by match to protein family HMM PF00850 YP_002340724.1 identified by match to protein family HMM PF00561 YP_002340725.1 identified by glimmer; putative YP_002340726.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002340727.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002340728.1 identified by match to protein family HMM PF01408 YP_002340729.1 homopentamer; channel that opens in response to pressure or hypoosmotic shock YP_002340732.1 identified by glimmer; putative YP_002340734.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532; match to protein family HMM TIGR01481 YP_002340735.1 identified by match to protein family HMM PF07537 YP_002340737.1 identified by match to protein family HMM PF06103 YP_002340738.1 identified by match to protein family HMM PF02073 YP_002340740.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative YP_002340741.1 identified by glimmer; putative YP_002340742.1 identified by match to protein family HMM PF00583 YP_002340743.1 identified by match to protein family HMM PF00583 YP_002340744.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis YP_002340745.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate YP_002340746.1 identified by match to protein family HMM PF01580; match to protein family HMM PF09397 YP_002340747.1 identified by glimmer; putative YP_002340748.1 identified by match to protein family HMM PF01588 YP_002340749.1 identified by match to protein family HMM PF07285 YP_002340750.1 identified by match to protein family HMM PF00085 YP_002340751.1 pyrophosphatase; has activity against dUTP and dITP; the crystal structure of the Vibrio protein showed similarity to Methanococcus janaschii Mj0226; in Vibrio cholerae this gene is part of the Mba operon that is involved in regulation and maintenance of biofilms; in Escherichia coli overexpression of this gene leads to resistance to an HMP analog YP_002340752.1 identified by match to protein family HMM PF05343 YP_002340753.1 identified by match to protein family HMM PF03413 YP_002340754.1 identified by glimmer; putative YP_002340755.1 identified by match to protein family HMM PF00753 YP_002340756.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine YP_002340758.1 identified by match to protein family HMM PF01636; match to protein family HMM PF02958 YP_002340759.1 identified by glimmer; putative YP_002340760.1 identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02104 YP_002340761.1 identified by match to protein family HMM PF02834; match to protein family HMM TIGR02258 YP_002340762.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases YP_002340763.1 identified by match to protein family HMM PF08220 YP_002340764.1 identified by match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093 YP_002340765.1 identified by match to protein family HMM PF01943; match to protein family HMM PF03023 YP_002340766.1 identified by match to protein family HMM PF00070; match to protein family HMM PF00890; match to protein family HMM PF01134; match to protein family HMM PF01266; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR00275 YP_002340767.1 identified by glimmer; putative YP_002340768.1 identified by match to protein family HMM PF07690 YP_002340769.1 identified by match to protein family HMM PF01022 YP_002340770.1 identified by match to protein family HMM PF08327 YP_002340771.1 identified by glimmer; putative YP_002340774.1 identified by match to protein family HMM PF02559 YP_002340775.1 Converts glucose to D-glucono-1,5 lactone YP_002340776.1 identified by match to protein family HMM PF06800; match to protein family HMM TIGR00776 YP_002340777.1 identified by glimmer; putative YP_002340778.1 identified by match to protein family HMM PF02597; match to protein family HMM TIGR01682 YP_002340779.1 identified by match to protein family HMM PF02391 YP_002340780.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176 YP_002340781.1 identified by match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177 YP_002340782.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis YP_002340783.1 catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways YP_002340784.1 identified by match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666 YP_002340785.1 identified by match to protein family HMM PF01391 YP_002340786.1 identified by glimmer; putative YP_002340788.1 identified by match to protein family HMM PF00581 YP_002340789.1 identified by glimmer; putative YP_002340790.1 catalyzes the formation of O-acetyl -L-homoserine from L-homoserine and acetyl-CoA YP_002340792.1 identified by match to protein family HMM PF03323 YP_002340793.1 identified by match to protein family HMM PF03845; match to protein family HMM TIGR00912 YP_002340794.1 identified by match to protein family HMM PF05504; match to protein family HMM TIGR02887 YP_002340796.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002340798.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase YP_002340799.1 identified by match to protein family HMM PF07690 YP_002340800.1 identified by match to protein family HMM PF00999 YP_002340801.1 identified by match to protein family HMM PF02080 YP_002340802.1 identified by match to protein family HMM PF00589 YP_002340803.1 identified by match to protein family HMM PF02687 YP_002340804.1 identified by match to protein family HMM PF00005 YP_002340805.1 identified by match to protein family HMM PF04171; match to protein family HMM PF04235 YP_002340806.1 identified by glimmer; putative YP_002340808.1 identified by match to protein family HMM PF04055; match to protein family HMM TIGR01212 YP_002340809.1 identified by match to protein family HMM PF06962 YP_002340810.1 identified by match to protein family HMM PF00005 YP_002340812.1 identified by match to protein family HMM PF01177; match to protein family HMM TIGR00035 YP_002340814.1 identified by match to protein family HMM PF03929 YP_002340815.1 identified by glimmer; putative YP_002340817.1 identified by glimmer; putative YP_002340819.1 identified by match to protein family HMM PF00132 YP_002340820.1 identified by match to protein family HMM PF01569 YP_002340821.1 identified by match to protein family HMM PF00534 YP_002340823.1 identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177 YP_002340824.1 identified by glimmer; putative YP_002340826.1 identified by match to protein family HMM PF00583 YP_002340827.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase YP_002340828.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP YP_002340829.1 identified by glimmer; putative YP_002340830.1 identified by match to protein family HMM PF05468 YP_002340831.1 identified by glimmer; putative YP_002340832.1 identified by match to protein family HMM PF00892 YP_002340834.1 identified by match to protein family HMM PF01391 YP_002340835.1 identified by match to protein family HMM PF02518 YP_002340836.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002340837.1 identified by match to protein family HMM PF00561 YP_002340838.1 identified by match to protein family HMM PF00884 YP_002340840.1 identified by glimmer; putative YP_002340842.1 identified by glimmer; putative YP_002340844.1 identified by match to protein family HMM PF00005 YP_002340845.1 identified by match to protein family HMM PF00528 YP_002340846.1 identified by glimmer; putative YP_002340847.1 identified by glimmer; putative YP_002340848.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549 YP_002340850.1 identified by match to protein family HMM PF00293; match to protein family HMM TIGR02705 YP_002340853.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2 YP_002340854.1 identified by match to protein family HMM PF01809; match to protein family HMM TIGR00278 YP_002340855.1 identified by match to protein family HMM PF00484 YP_002340856.1 identified by match to protein family HMM PF01654 YP_002340857.1 identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203 YP_002340859.1 identified by match to protein family HMM PF00395; match to protein family HMM PF05901 YP_002340860.1 identified by match to protein family HMM PF02698 YP_002340861.1 identified by match to protein family HMM PF02588 YP_002340862.1 identified by glimmer; putative YP_002340864.1 identified by glimmer; putative YP_002340866.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF04012 YP_002340868.1 identified by glimmer; putative YP_002340869.1 identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00437 YP_002340870.1 identified by match to protein family HMM PF04023 YP_002340871.1 identified by match to protein family HMM PF09515; match to protein family HMM TIGR02357 YP_002340872.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002340873.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002340874.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_002340875.1 identified by match to protein family HMM TIGR01167 YP_002340876.1 identified by match to protein family HMM PF00395 YP_002340877.1 identified by glimmer; putative YP_002340878.1 identified by glimmer; putative YP_002340879.1 identified by match to protein family HMM PF00156; match to protein family HMM TIGR01203 YP_002340880.1 identified by match to protein family HMM PF00781; match to protein family HMM TIGR00147 YP_002340881.1 identified by glimmer; putative YP_002340884.1 identified by match to protein family HMM PF02687 YP_002340885.1 identified by match to protein family HMM PF00005 YP_002340886.1 identified by glimmer; putative YP_002340887.1 identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655 YP_002340888.1 identified by match to protein family HMM PF09335 YP_002340890.1 identified by match to protein family HMM PF00165 YP_002340891.1 identified by match to protein family HMM PF08863 YP_002340892.1 identified by match to protein family HMM PF02687 YP_002340893.1 identified by match to protein family HMM PF00005 YP_002340894.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_002340895.1 identified by match to protein family HMM PF07853 YP_002340896.1 identified by match to protein family HMM PF01022 YP_002340897.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002340898.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002340900.1 identified by match to protein family HMM PF02687 YP_002340901.1 identified by match to protein family HMM PF00005 YP_002340902.1 identified by match to protein family HMM PF02687 YP_002340903.1 identified by match to protein family HMM PF09680; match to protein family HMM TIGR01732 YP_002340904.1 identified by match to protein family HMM PF02447; match to protein family HMM PF03600; match to protein family HMM TIGR00791 YP_002340905.1 identified by match to protein family HMM PF00392; match to protein family HMM PF07702 YP_002340906.1 identified by match to protein family HMM PF00294 YP_002340907.1 identified by match to protein family HMM PF07071; match to protein family HMM TIGR03581 YP_002340908.1 identified by match to protein family HMM PF01212; match to protein family HMM PF03841; match to protein family HMM TIGR01437 YP_002340909.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides YP_002340910.1 identified by match to protein family HMM PF02557 YP_002340911.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002340912.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002340913.1 identified by match to protein family HMM PF01188; match to protein family HMM PF02746; match to protein family HMM TIGR01928 YP_002340914.1 converts O-succinylbenzoate to O-succinylbenzoyl-CoA YP_002340915.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts YP_002340916.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA YP_002340917.1 identified by match to protein family HMM PF00561 YP_002340918.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis YP_002340919.1 identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543 YP_002340920.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate YP_002340921.1 identified by match to protein family HMM TIGR02890 YP_002340922.1 identified by match to protein family HMM PF00313 YP_002340923.1 identified by match to protein family HMM PF01987; match to protein family HMM TIGR00266 YP_002340924.1 identified by match to protein family HMM PF00376; match to protein family HMM PF07739 YP_002340925.1 identified by match to protein family HMM PF01764 YP_002340926.1 identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093 YP_002340927.1 catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose YP_002340928.1 identified by match to protein family HMM PF00132; match to protein family HMM TIGR02092 YP_002340929.1 catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate YP_002340930.1 catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain YP_002340932.1 identified by match to protein family HMM PF00082; match to protein family HMM PF02225 YP_002340933.1 Converts (S)-lactate and NAD(+) to pyruvate and NADH YP_002340934.1 identified by match to protein family HMM PF02308 YP_002340935.1 identified by match to protein family HMM PF02254; match to protein family HMM PF07885 YP_002340936.1 identified by match to protein family HMM PF08868 YP_002340937.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family YP_002340938.1 identified by match to protein family HMM PF04070 YP_002340939.1 induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation YP_002340940.1 identified by match to protein family HMM PF00155 YP_002340941.1 identified by match to protein family HMM PF01037 YP_002340942.1 identified by match to protein family HMM PF00389; match to protein family HMM PF02826 YP_002340943.1 identified by match to protein family HMM PF00561 YP_002340944.1 identified by match to protein family HMM PF08958 YP_002340945.1 identified by match to protein family HMM PF00155 YP_002340946.1 identified by match to protein family HMM PF00080 YP_002340948.1 identified by match to protein family HMM PF08810 YP_002340949.1 inhibitor of the KinA pathway of sporulation YP_002340950.1 identified by match to protein family HMM PF00939; match to protein family HMM PF02040; match to protein family HMM PF03600 YP_002340952.1 identified by match to protein family HMM PF08713 YP_002340953.1 Catalyzes a two-step reaction, first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA YP_002340954.1 identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369 YP_002340956.1 identified by match to protein family HMM PF02632 YP_002340957.1 identified by glimmer; putative YP_002340958.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_002340959.1 identified by match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880 YP_002340960.1 identified by match to protein family HMM PF02457 YP_002340961.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides YP_002340962.1 identified by match to protein family HMM PF06725 YP_002340964.1 identified by match to protein family HMM PF00293 YP_002340965.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_002340966.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_002340967.1 identified by match to protein family HMM PF06445 YP_002340968.1 identified by match to protein family HMM PF07690 YP_002340970.1 identified by match to protein family HMM PF04463 YP_002340971.1 identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655 YP_002340972.1 identified by match to protein family HMM PF00583 YP_002340973.1 identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049 YP_002340974.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate YP_002340975.1 identified by match to protein family HMM PF07293 YP_002340976.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_002340977.1 identified by match to protein family HMM PF09388 YP_002340978.1 identified by match to protein family HMM PF00005 YP_002340979.1 identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245 YP_002340980.1 identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686 YP_002340981.1 identified by glimmer; putative YP_002340982.1 identified by glimmer; putative YP_002340983.1 identified by match to protein family HMM PF09346 YP_002340984.1 identified by glimmer; putative YP_002340985.1 identified by glimmer; putative YP_002340986.1 identified by match to protein family HMM PF02517 YP_002340987.1 identified by match to protein family HMM PF01909 YP_002340988.1 identified by match to protein family HMM PF07315 YP_002340989.1 identified by match to protein family HMM PF01106 YP_002340990.1 identified by glimmer; putative YP_002340991.1 identified by match to protein family HMM TIGR02905 YP_002340992.1 identified by match to protein family HMM PF04608 YP_002340993.1 identified by match to protein family HMM PF00583 YP_002340994.1 identified by glimmer; putative YP_002340995.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_002340996.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01457; match to protein family HMM TIGR01460 YP_002340997.1 identified by match to protein family HMM PF01022; match to protein family HMM PF08220; match to protein family HMM PF08279 YP_002340998.1 identified by match to protein family HMM PF01934 YP_002340999.1 similar to GlpX type II fructose-1,6-bisphosphatase YP_002341001.1 identified by match to protein family HMM PF01479 YP_002341002.1 identified by match to protein family HMM PF06265 YP_002341003.1 identified by match to protein family HMM PF09580 YP_002341004.1 identified by match to protein family HMM PF00376; match to protein family HMM PF07739; match to protein family HMM PF09278 YP_002341006.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002341007.1 identified by match to protein family HMM PF00300 YP_002341008.1 identified by match to protein family HMM PF04073 YP_002341009.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group YP_002341010.1 identified by match to protein family HMM PF01551 YP_002341011.1 identified by match to protein family HMM PF09560; match to protein family HMM TIGR02832 YP_002341012.1 identified by match to protein family HMM PF08827 YP_002341014.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980 YP_002341015.1 identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994 YP_002341016.1 identified by match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR01979 YP_002341017.1 identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981 YP_002341018.1 identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978 YP_002341019.1 identified by match to protein family HMM PF03180 YP_002341020.1 identified by match to protein family HMM PF03180 YP_002341021.1 identified by match to protein family HMM PF00528 YP_002341022.1 identified by match to protein family HMM PF00005; match to protein family HMM PF09383 YP_002341023.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002341024.1 identified by glimmer; putative YP_002341026.1 identified by match to protein family HMM PF01751 YP_002341027.1 part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor YP_002341028.1 identified by match to protein family HMM PF03960; match to protein family HMM TIGR01617 YP_002341029.1 identified by glimmer; putative YP_002341031.1 identified by glimmer; putative YP_002341032.1 identified by glimmer; putative YP_002341036.1 Converts (S)-lactate and NAD(+) to pyruvate and NADH YP_002341037.1 identified by match to protein family HMM PF07875 YP_002341039.1 identified by match to protein family HMM PF02517 YP_002341040.1 identified by glimmer; putative YP_002341042.1 identified by match to protein family HMM PF01381 YP_002341043.1 identified by glimmer; putative YP_002341045.1 identified by match to protein family HMM PF00440 YP_002341046.1 identified by match to protein family HMM PF00753 YP_002341047.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002341048.1 identified by glimmer; putative YP_002341049.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002341050.1 identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737 YP_002341052.1 identified by match to protein family HMM PF00768; match to protein family HMM PF00905 YP_002341053.1 identified by match to protein family HMM PF01619 YP_002341055.1 identified by match to protein family HMM PF01910; match to protein family HMM TIGR00106 YP_002341056.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF02743 YP_002341057.1 identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766 YP_002341058.1 identified by match to protein family HMM PF01978 YP_002341059.1 identified by match to protein family HMM PF05738; match to protein family HMM TIGR01167 YP_002341060.1 identified by glimmer; putative YP_002341061.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002341064.1 identified by match to protein family HMM PF00324 YP_002341065.1 identified by match to protein family HMM TIGR01765; match to protein family HMM TIGR01766 YP_002341069.1 identified by match to protein family HMM PF00665 YP_002341070.1 involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site YP_002341071.1 identified by glimmer; putative YP_002341072.1 identified by match to protein family HMM PF02588 YP_002341073.1 identified by match to protein family HMM PF00583 YP_002341074.1 identified by glimmer; putative YP_002341075.1 identified by glimmer; putative YP_002341077.1 identified by glimmer; putative YP_002341078.1 identified by match to protein family HMM PF01381 YP_002341079.1 identified by match to protein family HMM PF09335 YP_002341080.1 identified by glimmer; putative YP_002341081.1 identified by match to protein family HMM PF03734 YP_002341083.1 identified by match to protein family HMM PF00512; match to protein family HMM PF02518 YP_002341084.1 identified by match to protein family HMM PF00892 YP_002341086.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content YP_002341087.1 identified by match to protein family HMM PF08241; match to protein family HMM PF08242 YP_002341088.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002341089.1 identified by match to protein family HMM PF00015; match to protein family HMM PF00672 YP_002341090.1 identified by match to protein family HMM PF01883 YP_002341091.1 identified by match to protein family HMM PF01447; match to protein family HMM PF02868; match to protein family HMM PF03413; match to protein family HMM PF07504 YP_002341092.1 identified by match to protein family HMM PF02678; match to protein family HMM PF07883 YP_002341093.1 identified by match to protein family HMM PF01047 YP_002341094.1 identified by glimmer; putative YP_002341095.1 identified by match to protein family HMM PF00999 YP_002341096.1 identified by match to protein family HMM PF02080 YP_002341097.1 identified by glimmer; putative YP_002341098.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002341099.1 identified by match to protein family HMM PF00210 YP_002341100.1 identified by glimmer; putative YP_002341101.1 identified by glimmer; putative YP_002341103.1 identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730 YP_002341104.1 identified by match to protein family HMM PF03819 YP_002341105.1 identified by match to protein family HMM PF00210 YP_002341107.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670 YP_002341108.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670 YP_002341109.1 identified by glimmer; putative YP_002341110.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002341111.1 identified by match to protein family HMM PF01235; match to protein family HMM TIGR00835 YP_002341114.1 identified by match to protein family HMM PF00665 YP_002341117.1 identified by match to protein family HMM PF00248 YP_002341118.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002341119.1 identified by match to protein family HMM PF01638 YP_002341121.1 identified by match to protein family HMM PF00070; match to protein family HMM PF07992 YP_002341122.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr) YP_002341123.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis YP_002341127.1 identified by match to protein family HMM PF00015 YP_002341128.1 identified by match to protein family HMM PF03372 YP_002341129.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_002341130.1 may be involved in chromosome condensation; overexpression in Escherichia coli protects against decondensation by camphor; overexpressing the protein results in an increase in supercoiling YP_002341131.1 identified by glimmer; putative YP_002341133.1 identified by match to protein family HMM PF07690 YP_002341134.1 identified by match to protein family HMM PF00005; match to protein family HMM PF02463 YP_002341135.1 identified by match to protein family HMM PF00583 YP_002341136.1 identified by match to protein family HMM PF06146 YP_002341137.1 identified by match to protein family HMM PF08378 YP_002341138.1 identified by match to protein family HMM PF00005 YP_002341139.1 identified by match to protein family HMM PF01032 YP_002341140.1 identified by match to protein family HMM PF01032 YP_002341141.1 identified by match to protein family HMM PF01497 YP_002341142.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002341143.1 identified by glimmer; putative YP_002341144.1 identified by match to protein family HMM PF02687 YP_002341145.1 identified by match to protein family HMM PF00005 YP_002341146.1 identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655 YP_002341147.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002341148.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002341149.1 identified by match to protein family HMM PF09335 YP_002341151.1 identified by glimmer; putative YP_002341153.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002341155.1 identified by glimmer; putative YP_002341156.1 identified by glimmer; putative YP_002341157.1 identified by glimmer; putative YP_002341159.1 identified by match to protein family HMM PF00165; match to protein family HMM PF06445 YP_002341160.1 identified by match to protein family HMM PF01022 YP_002341161.1 identified by match to protein family HMM PF00899 YP_002341162.1 identified by match to protein family HMM PF00551; match to protein family HMM PF02911 YP_002341163.1 identified by match to protein family HMM PF07690 YP_002341165.1 identified by match to protein family HMM PF01022 YP_002341166.1 identified by glimmer; putative YP_002341167.1 identified by match to protein family HMM PF04171; match to protein family HMM PF04235 YP_002341168.1 identified by match to protein family HMM PF02517 YP_002341169.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation YP_002341170.1 identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063 YP_002341172.1 identified by match to protein family HMM PF03840; match to protein family HMM TIGR00810 YP_002341173.1 identified by match to protein family HMM PF04172 YP_002341174.1 increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation; inhibited by the antiholin-like proteins lrgAB YP_002341175.1 identified by match to protein family HMM PF01156 YP_002341176.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis YP_002341177.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate YP_002341178.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate YP_002341179.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway YP_002341180.1 identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534 YP_002341181.1 identified by match to protein family HMM PF04198 YP_002341182.1 identified by match to protein family HMM PF00462; match to protein family HMM PF05768 YP_002341183.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen YP_002341184.1 identified by glimmer; putative YP_002341185.1 identified by glimmer; putative YP_002341186.1 identified by glimmer; putative YP_002341188.1 identified by glimmer; putative YP_002341189.1 identified by match to protein family HMM PF00239 YP_002341190.1 identified by match to protein family HMM PF01555 YP_002341191.1 identified by match to protein family HMM PF04851 YP_002341192.1 identified by glimmer; putative YP_002341193.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF01609 YP_002341194.1 identified by glimmer; putative YP_002341195.1 identified by match to protein family HMM PF00589; match to protein family HMM PF02899 YP_002341196.1 identified by match to protein family HMM PF07870 YP_002341198.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838 YP_002341199.1 identified by match to protein family HMM PF07451; match to protein family HMM TIGR02845 YP_002341200.1 identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839 YP_002341201.1 identified by match to protein family HMM PF07870 YP_002341202.1 identified by match to protein family HMM PF04239; match to protein family HMM PF07870 YP_002341203.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates YP_002341204.1 identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003 YP_002341205.1 identified by match to protein family HMM PF02650; match to protein family HMM TIGR00647 YP_002341206.1 identified by match to protein family HMM PF01933; match to protein family HMM TIGR01826 YP_002341207.1 identified by match to protein family HMM PF03668 YP_002341208.1 identified by match to protein family HMM PF00293 YP_002341209.1 identified by match to protein family HMM PF04018 YP_002341210.1 identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF03486; match to protein family HMM PF07992; match to protein family HMM TIGR01292 YP_002341211.1 identified by match to protein family HMM PF00515; match to protein family HMM PF07719 YP_002341213.1 hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr dephosphorylation YP_002341214.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein YP_002341215.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system YP_002341216.1 identified by match to protein family HMM PF04020 YP_002341219.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate YP_002341220.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion YP_002341222.1 identified by match to protein family HMM PF00376 YP_002341224.1 identified by glimmer; putative YP_002341225.1 identified by glimmer; putative YP_002341227.1 identified by match to protein family HMM PF01381 YP_002341228.1 identified by match to protein family HMM PF03601 YP_002341229.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002341230.1 identified by match to protein family HMM PF00376 YP_002341231.1 identified by match to protein family HMM PF02525; match to protein family HMM PF03358 YP_002341233.1 identified by match to protein family HMM PF01906 YP_002341234.1 identified by match to protein family HMM PF00005; match to protein family HMM PF00664 YP_002341236.1 identified by match to protein family HMM PF00595; match to protein family HMM PF01471; match to protein family HMM PF03572; match to protein family HMM TIGR00225 YP_002341237.1 identified by match to protein family HMM PF02687 YP_002341238.1 identified by match to protein family HMM PF00005 YP_002341240.1 identified by glimmer; putative YP_002341241.1 catalyzes the release of newly synthesized polypeptide chains at the stop codons UAA and UGA YP_002341242.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins YP_002341243.1 identified by glimmer; putative YP_002341244.1 identified by match to protein family HMM PF02482; match to protein family HMM TIGR00741 YP_002341246.1 identified by match to protein family HMM PF00313 YP_002341248.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851 YP_002341249.1 identified by match to protein family HMM PF00877 YP_002341250.1 identified by match to protein family HMM PF01638 YP_002341251.1 identified by glimmer; putative YP_002341252.1 identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762 YP_002341253.1 identified by match to protein family HMM PF01205; match to protein family HMM PF09186; match to protein family HMM TIGR00257 YP_002341254.1 identified by match to protein family HMM PF03816; match to protein family HMM TIGR00350 YP_002341255.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_002341256.1 identified by match to protein family HMM PF00984; match to protein family HMM PF01210; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026 YP_002341257.1 identified by match to protein family HMM PF00953 YP_002341258.1 identified by match to protein family HMM PF01522 YP_002341259.1 identified by match to protein family HMM PF00158; match to protein family HMM PF00874; match to protein family HMM PF03610; match to protein family HMM PF07728 YP_002341260.1 identified by match to protein family HMM PF07452 YP_002341261.1 identified by match to protein family HMM PF02417; match to protein family HMM TIGR00937 YP_002341262.1 identified by match to protein family HMM PF04794 YP_002341263.1 identified by match to protein family HMM PF02056 YP_002341264.1 identified by match to protein family HMM PF02255 YP_002341265.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00359; match to protein family HMM TIGR00410 YP_002341266.1 identified by match to protein family HMM PF02302 YP_002341267.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_002341268.1 Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine YP_002341270.1 identified by match to protein family HMM PF04397 YP_002341271.1 identified by match to protein family HMM PF02255 YP_002341272.1 identified by match to protein family HMM PF02378; match to protein family HMM TIGR00359; match to protein family HMM TIGR00410 YP_002341273.1 identified by match to protein family HMM PF02302; match to protein family HMM TIGR00853 YP_002341274.1 identified by match to protein family HMM PF00375 YP_002341276.1 identified by match to protein family HMM PF00903 YP_002341277.1 identified by match to protein family HMM PF04203; match to protein family HMM TIGR01076 YP_002341278.1 identified by match to protein family HMM PF05738; match to protein family HMM TIGR01167 YP_002341279.1 identified by match to protein family HMM PF01345; match to protein family HMM PF05738; match to protein family HMM TIGR01167; match to protein family HMM TIGR01451 YP_002341282.1 identified by match to protein family HMM PF00126; match to protein family HMM PF03466 YP_002341284.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift YP_002341285.1 identified by match to protein family HMM PF01654 YP_002341287.1 identified by match to protein family HMM PF02040; match to protein family HMM PF03600 YP_002341288.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine YP_002341289.1 identified by match to protein family HMM PF02652; match to protein family HMM TIGR00795 YP_002341292.1 identified by match to protein family HMM PF06803 YP_002341293.1 identified by match to protein family HMM PF00884 YP_002341294.1 catalyzes the transamination of D-amino acids and their alpha-keto acids YP_002341295.1 identified by match to protein family HMM PF00877; match to protein family HMM PF06347; match to protein family HMM PF08239 YP_002341296.1 identified by match to protein family HMM PF01773; match to protein family HMM PF07662; match to protein family HMM PF07670; match to protein family HMM TIGR00804 YP_002341298.1 identified by match to protein family HMM PF00535 YP_002341299.1 identified by glimmer; putative YP_002341300.1 identified by match to protein family HMM PF02028; match to protein family HMM TIGR00842 YP_002341301.1 identified by match to protein family HMM PF06347; match to protein family HMM PF06725; match to protein family HMM PF08239 YP_002341302.1 identified by glimmer; putative YP_002341304.1 identified by match to protein family HMM PF01020 YP_002341306.1 identified by match to protein family HMM PF04434 YP_002341307.1 identified by match to protein family HMM PF00176; match to protein family HMM PF00271 YP_002341308.1 identified by match to protein family HMM PF04892 YP_002341309.1 identified by match to protein family HMM PF07872 YP_002341310.1 identified by glimmer; putative YP_002341312.1 identified by match to protein family HMM PF06338 YP_002341313.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates YP_002341315.1 identified by match to protein family HMM PF02687 YP_002341316.1 identified by match to protein family HMM PF00005 YP_002341317.1 identified by match to protein family HMM TIGR01730 YP_002341318.1 identified by match to protein family HMM PF07690; match to protein family HMM TIGR00881 YP_002341321.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518 YP_002341322.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002341323.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_002341325.1 attenuator function for control of operon expression YP_002341326.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_002341327.1 identified by match to protein family HMM PF00535 YP_002341328.1 identified by glimmer; putative YP_002341329.1 identified by match to protein family HMM PF00534 YP_002341330.1 identified by match to protein family HMM PF00534 YP_002341331.1 identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236 YP_002341332.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_002341333.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993; match to protein family HMM PF08485 YP_002341334.1 identified by match to protein family HMM PF00534 YP_002341335.1 identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF07993 YP_002341336.1 identified by match to protein family HMM PF02397 YP_002341337.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993 YP_002341338.1 identified by match to protein family HMM PF00483; match to protein family HMM TIGR01099 YP_002341339.1 identified by match to protein family HMM PF02811 YP_002341340.1 identified by match to protein family HMM TIGR01007 YP_002341341.1 identified by match to protein family HMM PF02706 YP_002341342.1 identified by match to protein family HMM TIGR01007 YP_002341343.1 in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP YP_002341344.1 identified by match to protein family HMM PF02491; match to protein family HMM PF06723; match to protein family HMM TIGR00904 YP_002341346.1 identified by glimmer; putative YP_002341347.1 identified by match to protein family HMM PF01551 YP_002341348.1 identified by match to protein family HMM PF01061 YP_002341349.1 identified by match to protein family HMM PF00005 YP_002341350.1 identified by match to protein family HMM PF00005; match to protein family HMM PF04397 YP_002341351.1 identified by match to protein family HMM PF08486; match to protein family HMM TIGR02669; match to protein family HMM TIGR02870 YP_002341352.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002341353.1 identified by match to protein family HMM PF08680 YP_002341354.1 identified by match to protein family HMM PF06612; match to protein family HMM TIGR02327 YP_002341355.1 Catalyzes the transfer of electrons from NADH to quinone YP_002341356.1 Catalyzes the transfer of electrons from NADH to quinone YP_002341357.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_002341358.1 Catalyzes the transfer of electrons from NADH to quinone YP_002341359.1 Catalyzes the transfer of electrons from NADH to quinone YP_002341360.1 Catalyzes the transfer of electrons from NADH to quinone YP_002341361.1 Catalyzes the transfer of electrons from NADH to quinone YP_002341362.1 catalyzes the transfer of electrons from NADH to ubiquinone YP_002341363.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_002341364.1 The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen YP_002341365.1 Catalyzes the transfer of electrons from NADH to ubiquinone YP_002341366.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002341369.1 identified by match to protein family HMM PF06161 YP_002341370.1 part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane YP_002341371.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit YP_002341372.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit YP_002341373.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002341374.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit YP_002341375.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex YP_002341376.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel. YP_002341377.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0 YP_002341378.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0 YP_002341379.1 identified by match to protein family HMM PF05468 YP_002341381.1 identified by glimmer; putative YP_002341382.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate YP_002341383.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate YP_002341384.1 identified by match to protein family HMM PF04260; match to protein family HMM TIGR01440 YP_002341385.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity YP_002341386.1 identified by match to protein family HMM PF01451 YP_002341387.1 identified by match to protein family HMM PF00358; match to protein family HMM TIGR00830 YP_002341388.1 identified by match to protein family HMM PF07681 YP_002341389.1 identified by match to protein family HMM PF01613 YP_002341390.1 identified by glimmer; putative YP_002341391.1 identified by match to protein family HMM PF02659 YP_002341392.1 identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057 YP_002341394.1 identified by match to protein family HMM PF09551; match to protein family HMM TIGR02837 YP_002341395.1 identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03534 YP_002341396.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 YP_002341397.1 catalyzes the formation of thymidine 5'-phosphate from thymidine YP_002341398.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome YP_002341399.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes YP_002341400.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese YP_002341401.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active YP_002341402.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate YP_002341403.1 identified by match to protein family HMM PF00072 YP_002341405.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer YP_002341406.1 participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling YP_002341407.1 identified by match to protein family HMM PF00440 YP_002341408.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002341409.1 identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028 YP_002341410.1 converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA YP_002341411.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation YP_002341412.1 identified by match to protein family HMM PF02754 YP_002341413.1 identified by match to protein family HMM PF00614 YP_002341414.1 identified by match to protein family HMM PF03851; match to protein family HMM TIGR00629 YP_002341415.1 identified by glimmer; putative YP_002341416.1 identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254 YP_002341417.1 identified by match to protein family HMM PF05968 YP_002341418.1 identified by match to protein family HMM PF01381 YP_002341419.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF07504 YP_002341420.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196; match to protein family HMM PF08281 YP_002341421.1 identified by match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002341422.1 identified by match to protein family HMM PF01061 YP_002341423.1 identified by match to protein family HMM PF00005 YP_002341424.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential YP_002341425.1 identified by match to protein family HMM PF00746; match to protein family HMM PF05737; match to protein family HMM PF05738; match to protein family HMM TIGR01167 YP_002341426.1 identified by match to protein family HMM PF01546; match to protein family HMM PF02225; match to protein family HMM PF04389 YP_002341427.1 identified by glimmer; putative YP_002341429.1 identified by glimmer; putative YP_002341430.1 Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription YP_002341431.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase YP_002341432.1 identified by match to protein family HMM PF09148 YP_002341433.1 identified by match to protein family HMM PF02016 YP_002341434.1 identified by match to protein family HMM PF06486; match to protein family HMM TIGR01655 YP_002341436.1 identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230 YP_002341437.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine YP_002341438.1 identified by match to protein family HMM PF07690 YP_002341439.1 identified by match to protein family HMM PF00376 YP_002341440.1 identified by glimmer; putative YP_002341441.1 identified by match to protein family HMM PF03009 YP_002341442.1 identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM TIGR02074 YP_002341443.1 identified by match to protein family HMM PF08741 YP_002341444.1 identified by match to protein family HMM PF02163 YP_002341445.1 4-OT; member of subfamily 5; forms a dimer; the function in the Escherichia coli cell is unknown YP_002341446.1 identified by match to protein family HMM PF01966 YP_002341447.1 identified by match to protein family HMM PF01497 YP_002341448.1 identified by match to protein family HMM PF00005 YP_002341449.1 identified by match to protein family HMM PF01032 YP_002341450.1 identified by match to protein family HMM PF01032 YP_002341452.1 identified by match to protein family HMM TIGR02894 YP_002341454.1 identified by match to protein family HMM PF03099 YP_002341455.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta YP_002341456.1 identified by match to protein family HMM PF06778 YP_002341457.1 identified by match to protein family HMM PF00768; match to protein family HMM PF07943 YP_002341458.1 identified by match to protein family HMM PF07486 YP_002341459.1 identified by match to protein family HMM PF09671; match to protein family HMM TIGR02728 YP_002341460.1 identified by match to protein family HMM PF04241 YP_002341462.1 identified by match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM PF07885 YP_002341463.1 identified by match to protein family HMM PF00860 YP_002341464.1 identified by match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00099; match to protein family HMM TIGR01484 YP_002341466.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine YP_002341468.1 identified by match to protein family HMM PF00005 YP_002341469.1 identified by match to protein family HMM PF00657 YP_002341470.1 identified by match to protein family HMM PF00356; match to protein family HMM PF00532 YP_002341471.1 identified by match to protein family HMM PF02588 YP_002341472.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine YP_002341473.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis YP_002341474.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol YP_002341475.1 identified by match to protein family HMM PF00654 YP_002341476.1 identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549; match to protein family HMM TIGR02254 YP_002341477.1 activator of nucleoside metabolism YP_002341478.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds YP_002341479.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00196 YP_002341480.1 identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF07730 YP_002341481.1 catalyzes the phosphorylation of three vitamin B6 precursors, pyridoxal, pyridoxine and pyridoxamine YP_002341482.1 identified by match to protein family HMM PF00990; match to protein family HMM PF07694; match to protein family HMM TIGR00254 YP_002341483.1 identified by match to protein family HMM PF04328 YP_002341484.1 identified by match to protein family HMM PF02554 YP_002341485.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002341486.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002341488.1 identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696 YP_002341489.1 identified by match to protein family HMM PF00534 YP_002341491.1 identified by match to protein family HMM PF03458 YP_002341492.1 identified by match to protein family HMM PF00015 YP_002341494.1 identified by match to protein family HMM PF03061 YP_002341495.1 identified by match to protein family HMM PF00535 YP_002341498.1 identified by match to protein family HMM PF00535 YP_002341499.1 identified by match to protein family HMM PF01943 YP_002341500.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002341501.1 an automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop YP_002341502.1 identified by match to protein family HMM PF00005 YP_002341503.1 identified by match to protein family HMM PF00440 YP_002341504.1 identified by match to protein family HMM PF00873 YP_002341505.1 identified by match to protein family HMM PF01625; match to protein family HMM PF01641; match to protein family HMM TIGR00357; match to protein family HMM TIGR00401 YP_002341506.1 identified by match to protein family HMM PF01594 YP_002341507.1 in conjunction with LrgA this protein inhibits the expression or activity of extracellular murein hydrolases YP_002341508.1 negatively regulates murein hydrolase activity YP_002341509.1 identified by match to protein family HMM PF00072; match to protein family HMM PF04397 YP_002341510.1 identified by match to protein family HMM PF01590; match to protein family HMM PF02518; match to protein family HMM PF06580; match to protein family HMM PF07694 YP_002341511.1 identified by match to protein family HMM PF00083; match to protein family HMM PF07690 YP_002341512.1 identified by match to protein family HMM PF02028 YP_002341513.1 identified by match to protein family HMM PF02898 YP_002341514.1 identified by match to protein family HMM PF00081; match to protein family HMM PF02777 YP_002341515.1 identified by match to protein family HMM PF01370; match to protein family HMM PF07993 YP_002341516.1 identified by match to protein family HMM PF02293 YP_002341521.1 identified by match to protein family HMM PF00534 YP_002341523.1 identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179 YP_002341524.1 identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065 YP_002341525.1 identified by match to protein family HMM PF08876 YP_002341526.1 identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880 YP_002341527.1 identified by match to protein family HMM PF00478; match to protein family HMM TIGR01306 YP_002341528.1 identified by match to protein family HMM PF01432; match to protein family HMM PF08439; match to protein family HMM TIGR00181 YP_002341529.1 identified by match to protein family HMM PF04055 YP_002341530.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA YP_002341532.1 identified by match to protein family HMM PF00089 YP_002341533.1 identified by match to protein family HMM PF00753 YP_002341534.1 identified by match to protein family HMM PF09648 YP_002341535.1 identified by match to protein family HMM PF07435 YP_002341536.1 identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229 YP_002341537.1 identified by match to protein family HMM PF00072; match to protein family HMM PF00486 YP_002341538.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis YP_002341539.1 unwinds double stranded DNA YP_002341540.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk YP_002341541.1 identified by match to protein family HMM PF01368; match to protein family HMM PF02272 YP_002341543.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit YP_002341544.1 binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA YP_002341545.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21 YP_002341546.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 YP_002341547.1 identified by match to protein family HMM PF00924 YP_002341548.1 identified by match to protein family HMM PF06866; match to protein family HMM TIGR02841 YP_002341549.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_002341550.1 identified by match to protein family HMM PF01656 YP_002341551.1 identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180 YP_002341552.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA YP_002341553.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs YP_002341554.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE YP_002341555.1 identified by match to protein family HMM PF01424 YP_002341556.1 involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site; necessary for sporulation YP_002341557.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates YP_002341558.1 in Escherichia coli transcription of this gene is enhanced by polyamines