-- dump date 20140618_223332 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_001485261.1 157690799 5623036 1..1341 1 NC_009848.1 binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1341 dnaA 5623036 dnaA Bacillus pumilus SAFR-032 chromosomal replication initiation protein YP_001485261.1 1 D 315750 CDS YP_001485262.1 157690800 5619212 1409..2674 1 NC_009848.1 binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 2674 dnaN 5619212 dnaN Bacillus pumilus SAFR-032 DNA polymerase III subunit beta YP_001485262.1 1409 D 315750 CDS YP_001485263.1 157690801 5619213 2801..3040 1 NC_009848.1 hypothetical protein 3040 yaaA 5619213 yaaA Bacillus pumilus SAFR-032 hypothetical protein YP_001485263.1 2801 D 315750 CDS YP_001485264.1 157690802 5619214 3057..4169 1 NC_009848.1 Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 4169 recF 5619214 recF Bacillus pumilus SAFR-032 recombination protein F YP_001485264.1 3057 D 315750 CDS YP_001485265.1 157690803 5619215 4178..4432 1 NC_009848.1 hypothetical protein 4432 yaaB 5619215 yaaB Bacillus pumilus SAFR-032 hypothetical protein YP_001485265.1 4178 D 315750 CDS YP_001485266.1 157690804 5619216 4478..6406 1 NC_009848.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 6406 gyrB 5619216 gyrB Bacillus pumilus SAFR-032 DNA gyrase subunit B YP_001485266.1 4478 D 315750 CDS YP_001485267.1 157690805 5619217 6639..9158 1 NC_009848.1 negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 9158 gyrA 5619217 gyrA Bacillus pumilus SAFR-032 DNA gyrase subunit A YP_001485267.1 6639 D 315750 CDS YP_001485268.1 157690806 5619221 14579..14770 1 NC_009848.1 possible sigma-F transcribed protein; hypothetical protein 14770 csfB 5619221 csfB Bacillus pumilus SAFR-032 hypothetical protein YP_001485268.1 14579 D 315750 CDS YP_001485269.1 157690807 5619222 14900..15514 1 NC_009848.1 5-bromo-4-chloroindolyl phosphate hydrolysis protein 15514 xpaC 5619222 xpaC Bacillus pumilus SAFR-032 5-bromo-4-chloroindolyl phosphate hydrolysis protein YP_001485269.1 14900 D 315750 CDS YP_001485270.1 157690808 5619223 15726..16592 1 NC_009848.1 toxic anion resistance protein TelA 16592 yaaN 5619223 yaaN Bacillus pumilus SAFR-032 toxic anion resistance protein TelA YP_001485270.1 15726 D 315750 CDS YP_001485271.1 157690809 5619224 16670..18079 1 NC_009848.1 LdcC; arginine/lysine/ornithine decarboxylase 18079 yaaO 5619224 yaaO Bacillus pumilus SAFR-032 arginine/lysine/ornithine decarboxylase YP_001485271.1 16670 D 315750 CDS YP_001485272.1 157690810 5619225 18076..18714 1 NC_009848.1 catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 18714 tmk 5619225 tmk Bacillus pumilus SAFR-032 thymidylate kinase YP_001485272.1 18076 D 315750 CDS YP_001485273.1 157690811 5619226 18794..19123 1 NC_009848.1 hypothetical protein 19123 yaaQ 5619226 yaaQ Bacillus pumilus SAFR-032 hypothetical protein YP_001485273.1 18794 D 315750 CDS YP_001485274.1 157690812 5619227 19136..19576 1 NC_009848.1 hypothetical protein 19576 yaaR 5619227 yaaR Bacillus pumilus SAFR-032 hypothetical protein YP_001485274.1 19136 D 315750 CDS YP_001485275.1 157690813 5619228 19588..20577 1 NC_009848.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 20577 holB 5619228 holB Bacillus pumilus SAFR-032 DNA polymerase III subunit delta' YP_001485275.1 19588 D 315750 CDS YP_001485276.1 157690814 5619229 20580..21407 1 NC_009848.1 possible stage 0 sporulation protein; signal peptidase II 21407 yaaT 5619229 yaaT Bacillus pumilus SAFR-032 signal peptidase II YP_001485276.1 20580 D 315750 CDS YP_001485277.1 157690815 5619230 21422..21775 1 NC_009848.1 in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA; DNA replication intiation control protein YabA 21775 yabA 5619230 yabA Bacillus pumilus SAFR-032 DNA replication intiation control protein YabA YP_001485277.1 21422 D 315750 CDS YP_001485278.1 157690816 5619231 21831..22574 1 NC_009848.1 O-methyltransferase 22574 yabB 5619231 yabB Bacillus pumilus SAFR-032 O-methyltransferase YP_001485278.1 21831 D 315750 CDS YP_001485279.1 157690817 5619232 22561..22857 1 NC_009848.1 endonuclease 22857 yazA 5619232 yazA Bacillus pumilus SAFR-032 endonuclease YP_001485279.1 22561 D 315750 CDS YP_001485280.1 157690818 5619233 22835..23713 1 NC_009848.1 tetrapyrrole (corrin/porphyrin) methylase; methyltransferase 23713 yabC 5619233 yabC Bacillus pumilus SAFR-032 methyltransferase YP_001485280.1 22835 D 315750 CDS YP_001485281.1 157690819 5619234 complement(23759..24043) 1 NC_009848.1 transcriptional regulator 24043 5619234 BPUM_0021 Bacillus pumilus SAFR-032 transcriptional regulator YP_001485281.1 23759 R 315750 CDS YP_001485282.1 157690820 5619235 24570..26570 1 NC_009848.1 methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 26570 metG 5619235 metG Bacillus pumilus SAFR-032 methionyl-tRNA synthetase YP_001485282.1 24570 D 315750 CDS YP_001485283.1 157690821 5619236 26653..27420 1 NC_009848.1 TatD deoxyribonuclease 27420 yabD 5619236 yabD Bacillus pumilus SAFR-032 TatD deoxyribonuclease YP_001485283.1 26653 D 315750 CDS YP_001485284.1 157690822 5619237 27665..28867 1 NC_009848.1 hypothetical protein 28867 yabE 5619237 yabE Bacillus pumilus SAFR-032 hypothetical protein YP_001485284.1 27665 D 315750 CDS YP_001485285.1 157690823 5619238 29028..29588 1 NC_009848.1 ribonuclease M5 29588 rnmV 5619238 rnmV Bacillus pumilus SAFR-032 ribonuclease M5 YP_001485285.1 29028 D 315750 CDS YP_001485286.1 157690824 5619239 29581..30459 1 NC_009848.1 catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 30459 ksgA 5619239 ksgA Bacillus pumilus SAFR-032 dimethyladenosine transferase YP_001485286.1 29581 D 315750 CDS YP_001485287.1 157690825 5619240 30590..31474 1 NC_009848.1 spore coat protein YabG; sporulation-specific U57 family peptidase 31474 yabG 5619240 yabG Bacillus pumilus SAFR-032 sporulation-specific U57 family peptidase YP_001485287.1 30590 D 315750 CDS YP_001485288.1 157690826 5619241 31688..31945 1 NC_009848.1 hypothetical protein 31945 veg 5619241 veg Bacillus pumilus SAFR-032 hypothetical protein YP_001485288.1 31688 D 315750 CDS YP_001485289.1 157690827 5619242 32109..32294 1 NC_009848.1 small acid-soluble spore protein F 32294 sspF 5619242 sspF Bacillus pumilus SAFR-032 small acid-soluble spore protein F YP_001485289.1 32109 D 315750 CDS YP_001485290.1 157690828 5619243 32441..33310 1 NC_009848.1 An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 33310 ipk 5619243 ipk Bacillus pumilus SAFR-032 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_001485290.1 32441 D 315750 CDS YP_001485291.1 157690829 5619244 33366..34199 1 NC_009848.1 pur operon repressor 34199 purR 5619244 purR Bacillus pumilus SAFR-032 pur operon repressor YP_001485291.1 33366 D 315750 CDS YP_001485292.1 157690830 5619245 34236..34613 1 NC_009848.1 hypothetical protein 34613 yabJ 5619245 yabJ Bacillus pumilus SAFR-032 hypothetical protein YP_001485292.1 34236 D 315750 CDS YP_001485293.1 157690831 5619246 34839..35135 1 NC_009848.1 stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 35135 spoVG 5619246 spoVG Bacillus pumilus SAFR-032 regulatory protein SpoVG YP_001485293.1 34839 D 315750 CDS YP_001485294.1 157690832 5619247 35305..36705 1 NC_009848.1 forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 36705 glmU 5619247 glmU Bacillus pumilus SAFR-032 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase YP_001485294.1 35305 D 315750 CDS YP_001485295.1 157690833 5619248 36728..37681 1 NC_009848.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 37681 prs 5619248 prs Bacillus pumilus SAFR-032 ribose-phosphate pyrophosphokinase YP_001485295.1 36728 D 315750 CDS YP_001485296.1 157690834 5619249 37819..38445 1 NC_009848.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 38445 ctc 5619249 ctc Bacillus pumilus SAFR-032 50S ribosomal protein L25/general stress protein Ctc YP_001485296.1 37819 D 315750 CDS YP_001485297.1 157690835 5619250 38585..39151 1 NC_009848.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 39151 spoVC 5619250 spoVC Bacillus pumilus SAFR-032 peptidyl-tRNA hydrolase YP_001485297.1 38585 D 315750 CDS YP_001485298.1 157690836 5619251 39207..39437 1 NC_009848.1 hypothetical protein 39437 yabK 5619251 yabK Bacillus pumilus SAFR-032 hypothetical protein YP_001485298.1 39207 D 315750 CDS YP_001485299.1 157690837 5619252 39505..43038 1 NC_009848.1 transcription-repair coupling factor 43038 mfd 5619252 mfd Bacillus pumilus SAFR-032 transcription-repair coupling factor YP_001485299.1 39505 D 315750 CDS YP_001485300.1 157690838 5619253 43178..43714 1 NC_009848.1 stage V sporulation protein T 43714 spoVT 5619253 spoVT Bacillus pumilus SAFR-032 stage V sporulation protein T YP_001485300.1 43178 D 315750 CDS YP_001485301.1 157690839 5619254 43909..45513 1 NC_009848.1 MOP superfamily multidrug/oligosaccharidyl-lipid/polysaccharide flippase transporter 45513 yabM 5619254 yabM Bacillus pumilus SAFR-032 MOP superfamily multidrug/oligosaccharidyl-lipid/polysaccharide flippase transporter YP_001485301.1 43909 D 315750 CDS YP_001485302.1 157690840 5619255 45503..46987 1 NC_009848.1 MazG family protein; tetrapyrrole methyltransferase family protein 46987 yabN 5619255 yabN Bacillus pumilus SAFR-032 tetrapyrrole methyltransferase family protein YP_001485302.1 45503 D 315750 CDS YP_001485303.1 157690841 5619256 46984..47244 1 NC_009848.1 S4 RNA-binding domain-containing protein 47244 yabO 5619256 yabO Bacillus pumilus SAFR-032 S4 RNA-binding domain-containing protein YP_001485303.1 46984 D 315750 CDS YP_001485304.1 157690842 5619257 47319..47627 1 NC_009848.1 hypothetical protein 47627 yabP 5619257 yabP Bacillus pumilus SAFR-032 hypothetical protein YP_001485304.1 47319 D 315750 CDS YP_001485305.1 157690843 5619258 47624..48262 1 NC_009848.1 possible spore cortex biosynthesis protein; hypothetical protein 48262 yabQ 5619258 yabQ Bacillus pumilus SAFR-032 hypothetical protein YP_001485305.1 47624 D 315750 CDS YP_001485306.1 157690844 5619259 48281..48655 1 NC_009848.1 cell-division initiation protein 48655 divIC 5619259 divIC Bacillus pumilus SAFR-032 cell-division initiation protein YP_001485306.1 48281 D 315750 CDS YP_001485307.1 157690845 5619260 48738..49136 1 NC_009848.1 hypothetical protein 49136 yabR 5619260 yabR Bacillus pumilus SAFR-032 hypothetical protein YP_001485307.1 48738 D 315750 CDS YP_001485308.1 157690846 5619263 49690..52173 1 NC_009848.1 stage II sporulation phosphoprotein phosphatase; phosphoprotein phosphatase 52173 spoIIE 5619263 spoIIE Bacillus pumilus SAFR-032 phosphoprotein phosphatase YP_001485308.1 49690 D 315750 CDS YP_001485309.1 157690847 5619264 52250..52984 1 NC_009848.1 hypothetical protein 52984 yabS 5619264 yabS Bacillus pumilus SAFR-032 hypothetical protein YP_001485309.1 52250 D 315750 CDS YP_001485310.1 157690848 5619265 52968..53975 1 NC_009848.1 serine/threonine protein kinase 53975 yabT 5619265 yabT Bacillus pumilus SAFR-032 serine/threonine protein kinase YP_001485310.1 52968 D 315750 CDS YP_001485311.1 157690849 5619266 54072..55475 1 NC_009848.1 YacA; tRNA(Ile)-lysidine synthase 55475 tilS 5619266 tilS Bacillus pumilus SAFR-032 tRNA(Ile)-lysidine synthase YP_001485311.1 54072 D 315750 CDS YP_001485312.1 157690850 5619267 55491..56030 1 NC_009848.1 hypoxanthine phosphoribosyltransferase 56030 hprT 5619267 hprT Bacillus pumilus SAFR-032 hypoxanthine phosphoribosyltransferase YP_001485312.1 55491 D 315750 CDS YP_001485313.1 157690851 5619268 56126..58030 1 NC_009848.1 class III heat-shock protein; ATP-dependent zinc (Zn2+) protease; M41 family endopeptidase FtsH 58030 ftsH 5619268 ftsH Bacillus pumilus SAFR-032 M41 family endopeptidase FtsH YP_001485313.1 56126 D 315750 CDS YP_001485314.1 157690852 5619269 58188..58970 1 NC_009848.1 type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 58970 yacB 5619269 yacB Bacillus pumilus SAFR-032 pantothenate kinase YP_001485314.1 58188 D 315750 CDS YP_001485315.1 157690853 5619270 58986..59861 1 NC_009848.1 becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 59861 hslO 5619270 hslO Bacillus pumilus SAFR-032 Hsp33-like chaperonin YP_001485315.1 58986 D 315750 CDS YP_001485316.1 157690854 5619271 59908..60816 1 NC_009848.1 peptidyl-prolyl isomerase 60816 yacD 5619271 yacD Bacillus pumilus SAFR-032 peptidyl-prolyl isomerase YP_001485316.1 59908 D 315750 CDS YP_001485317.1 157690855 5619272 60894..61817 1 NC_009848.1 cysteine synthase 61817 cysK 5619272 cysK Bacillus pumilus SAFR-032 cysteine synthase YP_001485317.1 60894 D 315750 CDS YP_001485318.1 157690856 5619273 61942..63360 1 NC_009848.1 anthranilate synthase component I 63360 pabB 5619273 pabB Bacillus pumilus SAFR-032 anthranilate synthase component I YP_001485318.1 61942 D 315750 CDS YP_001485319.1 157690857 5619274 63374..63967 1 NC_009848.1 amphibolic enzyme subunit from Bacillus subtilis performs both in anthranilate and para-aminobenzoate synthesis; para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II 63967 pabA 5619274 pabA Bacillus pumilus SAFR-032 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II YP_001485319.1 63374 D 315750 CDS YP_001485320.1 157690858 5619275 63964..64812 1 NC_009848.1 catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 64812 pabC 5619275 pabC Bacillus pumilus SAFR-032 4-amino-4-deoxychorismate lyase YP_001485320.1 63964 D 315750 CDS YP_001485321.1 157690859 5619276 64823..65680 1 NC_009848.1 dihydropteroate synthase 65680 sul 5619276 sul Bacillus pumilus SAFR-032 dihydropteroate synthase YP_001485321.1 64823 D 315750 CDS YP_001485322.1 157690860 5619277 65697..66035 1 NC_009848.1 YacE; dihydroneopterin aldolase 66035 folB 5619277 folB Bacillus pumilus SAFR-032 dihydroneopterin aldolase YP_001485322.1 65697 D 315750 CDS YP_001485323.1 157690861 5619278 66032..66535 1 NC_009848.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase 66535 folK 5619278 folK Bacillus pumilus SAFR-032 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase YP_001485323.1 66032 D 315750 CDS YP_001485324.1 157690862 5619279 66487..66720 1 NC_009848.1 transcriptional regulator 66720 yazB 5619279 yazB Bacillus pumilus SAFR-032 transcriptional regulator YP_001485324.1 66487 D 315750 CDS YP_001485325.1 157690863 5619280 66713..67714 1 NC_009848.1 Dus1; dihydrouridine synthase 67714 yacF 5619280 yacF Bacillus pumilus SAFR-032 dihydrouridine synthase YP_001485325.1 66713 D 315750 CDS YP_001485326.1 157690864 5619281 67805..69304 1 NC_009848.1 class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 69304 lysS 5619281 lysS Bacillus pumilus SAFR-032 lysyl-tRNA synthetase YP_001485326.1 67805 D 315750 CDS YP_001485327.1 157690865 5619282 70863..70973 1 NC_009848.1 hypothetical protein 70973 5619282 BPUM_0067 Bacillus pumilus SAFR-032 hypothetical protein YP_001485327.1 70863 D 315750 CDS YP_001485328.1 157690866 5619286 76194..76658 1 NC_009848.1 CtsR family transcriptional regulator 76658 ctsR 5619286 ctsR Bacillus pumilus SAFR-032 CtsR family transcriptional regulator YP_001485328.1 76194 D 315750 CDS YP_001485329.1 157690867 5619287 76664..77230 1 NC_009848.1 nucleotide excision repair protein; transcriptional regulator 77230 mcsA 5619287 mcsA Bacillus pumilus SAFR-032 transcriptional regulator YP_001485329.1 76664 D 315750 CDS YP_001485330.1 157690868 5619288 77235..78326 1 NC_009848.1 YacI; ATP:guanido phosphotransferase 78326 mcsB 5619288 mcsB Bacillus pumilus SAFR-032 ATP:guanido phosphotransferase YP_001485330.1 77235 D 315750 CDS YP_001485331.1 157690869 5619289 78323..80758 1 NC_009848.1 negative regulator of genetic competence MecB; class III stress response-related ATPase 80758 clpC 5619289 clpC Bacillus pumilus SAFR-032 class III stress response-related ATPase YP_001485331.1 78323 D 315750 CDS YP_001485332.1 157690870 5619290 80912..82231 1 NC_009848.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 82231 radA 5619290 radA Bacillus pumilus SAFR-032 DNA repair protein RadA YP_001485332.1 80912 D 315750 CDS YP_001485333.1 157690871 5619291 82234..83313 1 NC_009848.1 non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA 83313 disA 5619291 disA Bacillus pumilus SAFR-032 DNA integrity scanning protein DisA YP_001485333.1 82234 D 315750 CDS YP_001485334.1 157690872 5619292 83467..84567 1 NC_009848.1 hypothetical protein 84567 yacL 5619292 yacL Bacillus pumilus SAFR-032 hypothetical protein YP_001485334.1 83467 D 315750 CDS YP_001485335.1 157690873 5619293 84581..85270 1 NC_009848.1 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 85270 ispD 5619293 ispD Bacillus pumilus SAFR-032 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_001485335.1 84581 D 315750 CDS YP_001485336.1 157690874 5619294 85274..85750 1 NC_009848.1 catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 85750 ispF 5619294 ispF Bacillus pumilus SAFR-032 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase YP_001485336.1 85274 D 315750 CDS YP_001485337.1 157690875 5619295 85845..87296 1 NC_009848.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 87296 gltX 5619295 gltX Bacillus pumilus SAFR-032 glutamyl-tRNA synthetase YP_001485337.1 85845 D 315750 CDS YP_001485338.1 157690876 5619296 87608..88261 1 NC_009848.1 serine O-acetyltransferase 88261 cysE 5619296 cysE Bacillus pumilus SAFR-032 serine O-acetyltransferase YP_001485338.1 87608 D 315750 CDS YP_001485339.1 157690877 5619297 88258..89658 1 NC_009848.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 89658 cysS 5619297 cysS Bacillus pumilus SAFR-032 cysteinyl-tRNA synthetase YP_001485339.1 88258 D 315750 CDS YP_001485340.1 157690878 5619298 89662..90093 1 NC_009848.1 ribonuclease III 90093 yazC 5619298 yazC Bacillus pumilus SAFR-032 ribonuclease III YP_001485340.1 89662 D 315750 CDS YP_001485341.1 157690879 5619299 90077..90826 1 NC_009848.1 tRNA/rRNA methyltransferase 90826 yacO 5619299 yacO Bacillus pumilus SAFR-032 tRNA/rRNA methyltransferase YP_001485341.1 90077 D 315750 CDS YP_001485342.1 157690880 5619300 90829..91341 1 NC_009848.1 hypothetical protein 91341 yacP 5619300 yacP Bacillus pumilus SAFR-032 hypothetical protein YP_001485342.1 90829 D 315750 CDS YP_001485343.1 157690881 5619301 91405..92061 1 NC_009848.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 92061 sigH 5619301 sigH Bacillus pumilus SAFR-032 RNA polymerase factor sigma-70 YP_001485343.1 91405 D 315750 CDS YP_001485344.1 157690882 5619302 92138..92287 1 NC_009848.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 92287 rpmG 5619302 rpmG Bacillus pumilus SAFR-032 50S ribosomal protein L33 YP_001485344.1 92138 D 315750 CDS YP_001485345.1 157690883 5619303 92323..92499 1 NC_009848.1 forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 92499 secE 5619303 secE Bacillus pumilus SAFR-032 preprotein translocase subunit SecE YP_001485345.1 92323 D 315750 CDS YP_001485346.1 157690884 5619304 92670..93203 1 NC_009848.1 Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 93203 nusG 5619304 nusG Bacillus pumilus SAFR-032 transcription antitermination protein NusG YP_001485346.1 92670 D 315750 CDS YP_001485347.1 157690885 5619305 93321..93800 1 NC_009848.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 93800 rplK 5619305 rplK Bacillus pumilus SAFR-032 50S ribosomal protein L11 YP_001485347.1 93321 D 315750 CDS YP_001485348.1 157690886 5619306 93900..94598 1 NC_009848.1 in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 94598 rplA 5619306 rplA Bacillus pumilus SAFR-032 50S ribosomal protein L1 YP_001485348.1 93900 D 315750 CDS YP_001485349.1 157690887 5619307 94857..95357 1 NC_009848.1 binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 95357 rplJ 5619307 rplJ Bacillus pumilus SAFR-032 50S ribosomal protein L10 YP_001485349.1 94857 D 315750 CDS YP_001485350.1 157690888 5619308 95399..95764 1 NC_009848.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 95764 rplL 5619308 rplL Bacillus pumilus SAFR-032 50S ribosomal protein L7/L12 YP_001485350.1 95399 D 315750 CDS YP_001485351.1 157690889 5619309 95862..96467 1 NC_009848.1 16S rRNA methyltransferase 96467 ybxB 5619309 ybxB Bacillus pumilus SAFR-032 16S rRNA methyltransferase YP_001485351.1 95862 D 315750 CDS YP_001485352.1 157690890 5619310 complement(96554..96703) 1 NC_009848.1 hypothetical protein 96703 5619310 BPUM_0092 Bacillus pumilus SAFR-032 hypothetical protein YP_001485352.1 96554 R 315750 CDS YP_001485353.1 157690891 5619311 96714..100304 1 NC_009848.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 100304 rpoB 5619311 rpoB Bacillus pumilus SAFR-032 DNA-directed RNA polymerase subunit beta YP_001485353.1 96714 D 315750 CDS YP_001485354.1 157690892 5619312 100366..103965 1 NC_009848.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 103965 rpoC 5619312 rpoC Bacillus pumilus SAFR-032 DNA-directed RNA polymerase subunit beta' YP_001485354.1 100366 D 315750 CDS YP_001485355.1 157690893 5619313 104111..104359 1 NC_009848.1 in Bacillus subtilis this non-essential protein associates with the ribosome; putative ribosomal protein L7Ae-like 104359 ybxF 5619313 ybxF Bacillus pumilus SAFR-032 putative ribosomal protein L7Ae-like YP_001485355.1 104111 D 315750 CDS YP_001485356.1 157690894 5619314 104472..104891 1 NC_009848.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 104891 rpsL 5619314 rpsL Bacillus pumilus SAFR-032 30S ribosomal protein S12 YP_001485356.1 104472 D 315750 CDS YP_001485357.1 157690895 5619315 105012..105482 1 NC_009848.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 105482 rpsG 5619315 rpsG Bacillus pumilus SAFR-032 30S ribosomal protein S7 YP_001485357.1 105012 D 315750 CDS YP_001485358.1 157690896 5619316 105537..107615 1 NC_009848.1 EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 107615 fusA 5619316 fusA Bacillus pumilus SAFR-032 elongation factor G YP_001485358.1 105537 D 315750 CDS YP_001485359.1 157690897 5619317 107734..108924 1 NC_009848.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 108924 tufA 5619317 tufA Bacillus pumilus SAFR-032 elongation factor Tu YP_001485359.1 107734 D 315750 CDS YP_001485360.1 157690898 5619318 109035..109994 1 NC_009848.1 alpha/beta fold family hydrolase 109994 ybaC 5619318 ybaC Bacillus pumilus SAFR-032 alpha/beta fold family hydrolase YP_001485360.1 109035 D 315750 CDS YP_001485361.1 157690899 5619319 110213..110521 1 NC_009848.1 NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 110521 rpsJ 5619319 rpsJ Bacillus pumilus SAFR-032 30S ribosomal protein S10 YP_001485361.1 110213 D 315750 CDS YP_001485362.1 157690900 5619320 110559..111188 1 NC_009848.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 111188 rplC 5619320 rplC Bacillus pumilus SAFR-032 50S ribosomal protein L3 YP_001485362.1 110559 D 315750 CDS YP_001485363.1 157690901 5619321 111216..111839 1 NC_009848.1 L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 111839 rplD 5619321 rplD Bacillus pumilus SAFR-032 50S ribosomal protein L4 YP_001485363.1 111216 D 315750 CDS YP_001485364.1 157690902 5619322 111839..112126 1 NC_009848.1 binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 112126 rplW 5619322 rplW Bacillus pumilus SAFR-032 50S ribosomal protein L23 YP_001485364.1 111839 D 315750 CDS YP_001485365.1 157690903 5619323 112155..112988 1 NC_009848.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 112988 rplB 5619323 rplB Bacillus pumilus SAFR-032 50S ribosomal protein L2 YP_001485365.1 112155 D 315750 CDS YP_001485366.1 157690904 5619324 113046..113324 1 NC_009848.1 protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 113324 rpsS 5619324 rpsS Bacillus pumilus SAFR-032 30S ribosomal protein S19 YP_001485366.1 113046 D 315750 CDS YP_001485367.1 157690905 5619325 113342..113683 1 NC_009848.1 binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 113683 rplV 5619325 rplV Bacillus pumilus SAFR-032 50S ribosomal protein L22 YP_001485367.1 113342 D 315750 CDS YP_001485368.1 157690906 5619326 113687..114343 1 NC_009848.1 forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 114343 rpsC 5619326 rpsC Bacillus pumilus SAFR-032 30S ribosomal protein S3 YP_001485368.1 113687 D 315750 CDS YP_001485369.1 157690907 5619327 114345..114779 1 NC_009848.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 114779 rplP 5619327 rplP Bacillus pumilus SAFR-032 50S ribosomal protein L16 YP_001485369.1 114345 D 315750 CDS YP_001485370.1 157690908 5619328 114745..114969 1 NC_009848.1 one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 114969 rpmC 5619328 rpmC Bacillus pumilus SAFR-032 50S ribosomal protein L29 YP_001485370.1 114745 D 315750 CDS YP_001485371.1 157690909 5619329 114995..115258 1 NC_009848.1 primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 115258 rpsQ 5619329 rpsQ Bacillus pumilus SAFR-032 30S ribosomal protein S17 YP_001485371.1 114995 D 315750 CDS YP_001485372.1 157690910 5619330 115298..115666 1 NC_009848.1 50S ribosomal protein L14 115666 rplN 5619330 rplN Bacillus pumilus SAFR-032 50S ribosomal protein L14 YP_001485372.1 115298 D 315750 CDS YP_001485373.1 157690911 5619331 115702..116013 1 NC_009848.1 assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 116013 rplX 5619331 rplX Bacillus pumilus SAFR-032 50S ribosomal protein L24 YP_001485373.1 115702 D 315750 CDS YP_001485374.1 157690912 5619332 116039..116578 1 NC_009848.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 116578 rplE 5619332 rplE Bacillus pumilus SAFR-032 50S ribosomal protein L5 YP_001485374.1 116039 D 315750 CDS YP_001485375.1 157690913 5619333 116601..116786 1 NC_009848.1 located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 116786 rpsN 5619333 rpsN Bacillus pumilus SAFR-032 30S ribosomal protein S14 YP_001485375.1 116601 D 315750 CDS YP_001485376.1 157690914 5619334 116818..117216 1 NC_009848.1 binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 117216 rpsH 5619334 rpsH Bacillus pumilus SAFR-032 30S ribosomal protein S8 YP_001485376.1 116818 D 315750 CDS YP_001485377.1 157690915 5619335 117233..117784 1 NC_009848.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 117784 rplF 5619335 rplF Bacillus pumilus SAFR-032 50S ribosomal protein L6 YP_001485377.1 117233 D 315750 CDS YP_001485378.1 157690916 5619336 117817..118179 1 NC_009848.1 binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 118179 rplR 5619336 rplR Bacillus pumilus SAFR-032 50S ribosomal protein L18 YP_001485378.1 117817 D 315750 CDS YP_001485379.1 157690917 5619337 118204..118704 1 NC_009848.1 located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 118704 rpsE 5619337 rpsE Bacillus pumilus SAFR-032 30S ribosomal protein S5 YP_001485379.1 118204 D 315750 CDS YP_001485380.1 157690918 5619338 118718..118900 1 NC_009848.1 L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 118900 rpmD 5619338 rpmD Bacillus pumilus SAFR-032 50S ribosomal protein L30 YP_001485380.1 118718 D 315750 CDS YP_001485381.1 157690919 5619339 118931..119371 1 NC_009848.1 late assembly protein; 50S ribosomal protein L15 119371 rplO 5619339 rplO Bacillus pumilus SAFR-032 50S ribosomal protein L15 YP_001485381.1 118931 D 315750 CDS YP_001485382.1 157690920 5619340 119373..120665 1 NC_009848.1 forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 120665 secY 5619340 secY Bacillus pumilus SAFR-032 preprotein translocase subunit SecY YP_001485382.1 119373 D 315750 CDS YP_001485383.1 157690921 5619341 120721..121374 1 NC_009848.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 121374 adk 5619341 adk Bacillus pumilus SAFR-032 adenylate kinase YP_001485383.1 120721 D 315750 CDS YP_001485384.1 157690922 5619342 121371..122117 1 NC_009848.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 122117 map 5619342 map Bacillus pumilus SAFR-032 methionine aminopeptidase YP_001485384.1 121371 D 315750 CDS YP_001485385.1 157690923 5619344 122430..122648 1 NC_009848.1 stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 122648 infA 5619344 infA Bacillus pumilus SAFR-032 translation initiation factor IF-1 YP_001485385.1 122430 D 315750 CDS YP_001485386.1 157690924 5619345 122680..122793 1 NC_009848.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 122793 rpmJ 5619345 rpmJ Bacillus pumilus SAFR-032 50S ribosomal protein L36 YP_001485386.1 122680 D 315750 CDS YP_001485387.1 157690925 5619346 122815..123180 1 NC_009848.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 123180 rpsM 5619346 rpsM Bacillus pumilus SAFR-032 30S ribosomal protein S13 YP_001485387.1 122815 D 315750 CDS YP_001485388.1 157690926 5619347 123201..123596 1 NC_009848.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 123596 rpsK 5619347 rpsK Bacillus pumilus SAFR-032 30S ribosomal protein S11 YP_001485388.1 123201 D 315750 CDS YP_001485389.1 157690927 5619348 123772..124716 1 NC_009848.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 124716 rpoA 5619348 rpoA Bacillus pumilus SAFR-032 DNA-directed RNA polymerase subunit alpha YP_001485389.1 123772 D 315750 CDS YP_001485390.1 157690928 5619349 124793..125155 1 NC_009848.1 is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 125155 rplQ 5619349 rplQ Bacillus pumilus SAFR-032 50S ribosomal protein L17 YP_001485390.1 124793 D 315750 CDS YP_001485391.1 157690929 5619350 125280..126122 1 NC_009848.1 with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 126122 cbiO 5619350 cbiO Bacillus pumilus SAFR-032 cobalt transporter ATP-binding subunit YP_001485391.1 125280 D 315750 CDS YP_001485392.1 157690930 5619351 126098..126967 1 NC_009848.1 with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 126967 cbiO 5619351 cbiO Bacillus pumilus SAFR-032 cobalt transporter ATP-binding subunit YP_001485392.1 126098 D 315750 CDS YP_001485393.1 157690931 5619352 126964..127761 1 NC_009848.1 cobalt ABC transporter 127761 ybaF 5619352 ybaF Bacillus pumilus SAFR-032 cobalt ABC transporter YP_001485393.1 126964 D 315750 CDS YP_001485394.1 157690932 5619353 127773..128516 1 NC_009848.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 128516 truA 5619353 truA Bacillus pumilus SAFR-032 tRNA pseudouridine synthase A YP_001485394.1 127773 D 315750 CDS YP_001485395.1 157690933 5619354 128683..129120 1 NC_009848.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 129120 rplM 5619354 rplM Bacillus pumilus SAFR-032 50S ribosomal protein L13 YP_001485395.1 128683 D 315750 CDS YP_001485396.1 157690934 5619355 129141..129533 1 NC_009848.1 forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 129533 rpsI 5619355 rpsI Bacillus pumilus SAFR-032 30S ribosomal protein S9 YP_001485396.1 129141 D 315750 CDS YP_001485397.1 157690935 5619356 129726..130241 1 NC_009848.1 ribosomal protein acetyltransferase 130241 ynaD 5619356 ynaD Bacillus pumilus SAFR-032 ribosomal protein acetyltransferase YP_001485397.1 129726 D 315750 CDS YP_001485398.1 157690936 5619357 130339..131085 1 NC_009848.1 metal-dependent hydrolase 131085 5619357 BPUM_0139 Bacillus pumilus SAFR-032 metal-dependent hydrolase YP_001485398.1 130339 D 315750 CDS YP_001485399.1 157690937 5619358 131105..131578 1 NC_009848.1 transcriptional regulator 131578 5619358 BPUM_0140 Bacillus pumilus SAFR-032 transcriptional regulator YP_001485399.1 131105 D 315750 CDS YP_001485400.1 157690938 5619359 131669..132685 1 NC_009848.1 D-alanyl-D-alanine carboxypeptidase 132685 5619359 BPUM_0141 Bacillus pumilus SAFR-032 D-alanyl-D-alanine carboxypeptidase YP_001485400.1 131669 D 315750 CDS YP_001485401.1 157690939 5619360 complement(132722..133291) 1 NC_009848.1 hypothetical protein 133291 5619360 BPUM_0142 Bacillus pumilus SAFR-032 hypothetical protein YP_001485401.1 132722 R 315750 CDS YP_001485402.1 157690940 5619361 133438..133881 1 NC_009848.1 hypothetical protein 133881 ybaK 5619361 ybaK Bacillus pumilus SAFR-032 hypothetical protein YP_001485402.1 133438 D 315750 CDS YP_001485403.1 157690941 5619362 133940..134653 1 NC_009848.1 N-acetylmuramoyl-L-alanine amidase 134653 cwlD 5619362 cwlD Bacillus pumilus SAFR-032 N-acetylmuramoyl-L-alanine amidase YP_001485403.1 133940 D 315750 CDS YP_001485404.1 157690942 5619363 134757..135815 1 NC_009848.1 ATPase 135815 ybaL 5619363 ybaL Bacillus pumilus SAFR-032 ATPase YP_001485404.1 134757 D 315750 CDS YP_001485405.1 157690943 5619364 complement(135854..136429) 1 NC_009848.1 spore germination protein D 136429 gerD 5619364 gerD Bacillus pumilus SAFR-032 spore germination protein D YP_001485405.1 135854 R 315750 CDS YP_001485406.1 157690944 5619365 136520..137122 1 NC_009848.1 KinB signaling pathway activation protein KbaA 137122 kbaA 5619365 kbaA Bacillus pumilus SAFR-032 KinB signaling pathway activation protein KbaA YP_001485406.1 136520 D 315750 CDS YP_001485407.1 157690945 5619366 complement(137115..137879) 1 NC_009848.1 sporulation polysaccharide deacetylase 137879 ybaN 5619366 ybaN Bacillus pumilus SAFR-032 sporulation polysaccharide deacetylase YP_001485407.1 137115 R 315750 CDS YP_001485408.1 157690946 5619371 144100..144294 1 NC_009848.1 hypothetical protein 144294 5619371 BPUM_0149 Bacillus pumilus SAFR-032 hypothetical protein YP_001485408.1 144100 D 315750 CDS YP_001485409.1 157690947 5619372 144291..145259 1 NC_009848.1 structural flagella protein; flagellin 145259 hag1 5619372 hag1 Bacillus pumilus SAFR-032 flagellin YP_001485409.1 144291 D 315750 CDS YP_001485410.1 157690948 5619373 145590..147032 1 NC_009848.1 SulP family sulfate permease 147032 sulP 5619373 sulP Bacillus pumilus SAFR-032 SulP family sulfate permease YP_001485410.1 145590 D 315750 CDS YP_001485411.1 157690949 5619374 147091..148056 1 NC_009848.1 bile acid:sodium (Na+) symporter 148056 5619374 BPUM_0152 Bacillus pumilus SAFR-032 bile acid:sodium (Na+) symporter YP_001485411.1 147091 D 315750 CDS YP_001485412.1 157690950 5619375 complement(148096..149343) 1 NC_009848.1 hypothetical protein 149343 ybbC 5619375 ybbC Bacillus pumilus SAFR-032 hypothetical protein YP_001485412.1 148096 R 315750 CDS YP_001485413.1 157690951 5619376 complement(149355..151274) 1 NC_009848.1 glycoside hydrolase 151274 ybbD 5619376 ybbD Bacillus pumilus SAFR-032 glycoside hydrolase YP_001485413.1 149355 R 315750 CDS YP_001485414.1 157690952 5619377 complement(151288..152643) 1 NC_009848.1 hypothetical protein 152643 ybbE 5619377 ybbE Bacillus pumilus SAFR-032 hypothetical protein YP_001485414.1 151288 R 315750 CDS YP_001485415.1 157690953 5619378 complement(152663..154036) 1 NC_009848.1 PTS family sucrose (suc) porter component IIBC 154036 ybbF 5619378 ybbF Bacillus pumilus SAFR-032 PTS family sucrose (suc) porter component IIBC YP_001485415.1 152663 R 315750 CDS YP_001485416.1 157690954 5619379 complement(154033..154902) 1 NC_009848.1 ybbH; transcriptional regulator 154902 5619379 BPUM_0157 Bacillus pumilus SAFR-032 transcriptional regulator YP_001485416.1 154033 R 315750 CDS YP_001485417.1 157690955 5619380 complement(154917..155828) 1 NC_009848.1 catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase 155828 murQ 5619380 murQ Bacillus pumilus SAFR-032 N-acetylmuramic acid 6-phosphate etherase YP_001485417.1 154917 R 315750 CDS YP_001485418.1 157690956 5619386 156606..157517 1 NC_009848.1 arginase 157517 rocF 5619386 rocF Bacillus pumilus SAFR-032 arginase YP_001485418.1 156606 D 315750 CDS YP_001485419.1 157690957 5619387 157677..158264 1 NC_009848.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: this protein is involved in detoxification and protection against antimicrobial; RNA polymerase sigma factor SigW 158264 sigW 5619387 sigW Bacillus pumilus SAFR-032 RNA polymerase sigma factor SigW YP_001485419.1 157677 D 315750 CDS YP_001485420.1 157690958 5619388 158279..158905 1 NC_009848.1 hypothetical protein 158905 ybbM 5619388 ybbM Bacillus pumilus SAFR-032 hypothetical protein YP_001485420.1 158279 D 315750 CDS YP_001485421.1 157690959 5619389 159124..159945 1 NC_009848.1 YbbQ; hypothetical protein 159945 ybbP 5619389 ybbP Bacillus pumilus SAFR-032 hypothetical protein YP_001485421.1 159124 D 315750 CDS YP_001485422.1 157690960 5619390 159938..161347 1 NC_009848.1 hypothetical protein 161347 ybbR 5619390 ybbR Bacillus pumilus SAFR-032 hypothetical protein YP_001485422.1 159938 D 315750 CDS YP_001485423.1 157690961 5619391 161373..162719 1 NC_009848.1 catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 162719 glmM 5619391 glmM Bacillus pumilus SAFR-032 phosphoglucosamine mutase YP_001485423.1 161373 D 315750 CDS YP_001485424.1 157690962 5619392 163295..165097 1 NC_009848.1 Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 165097 glmS 5619392 glmS Bacillus pumilus SAFR-032 glucosamine--fructose-6-phosphate aminotransferase YP_001485424.1 163295 D 315750 CDS YP_001485425.1 157690963 5619393 165160..165357 1 NC_009848.1 hypothetical protein 165357 5619393 BPUM_0166 Bacillus pumilus SAFR-032 hypothetical protein YP_001485425.1 165160 D 315750 CDS YP_001485426.1 157690964 5619394 165605..165961 1 NC_009848.1 hypothetical protein 165961 5619394 BPUM_0167 Bacillus pumilus SAFR-032 hypothetical protein YP_001485426.1 165605 D 315750 CDS YP_001485427.1 157690965 5619395 166124..166315 1 NC_009848.1 hypothetical protein 166315 5619395 BPUM_0168 Bacillus pumilus SAFR-032 hypothetical protein YP_001485427.1 166124 D 315750 CDS YP_001485428.1 157690966 5619396 166334..167251 1 NC_009848.1 ABC transporter ATP-binding protein 167251 5619396 BPUM_0169 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001485428.1 166334 D 315750 CDS YP_001485429.1 157690967 5619397 167248..168012 1 NC_009848.1 hypothetical protein 168012 5619397 BPUM_0170 Bacillus pumilus SAFR-032 hypothetical protein YP_001485429.1 167248 D 315750 CDS YP_001485430.1 157690968 5619398 168129..168518 1 NC_009848.1 hypothetical protein 168518 5619398 BPUM_0171 Bacillus pumilus SAFR-032 hypothetical protein YP_001485430.1 168129 D 315750 CDS YP_001485431.1 157690969 5619399 168720..168917 1 NC_009848.1 hypothetical protein 168917 5619399 BPUM_0172 Bacillus pumilus SAFR-032 hypothetical protein YP_001485431.1 168720 D 315750 CDS YP_001485432.1 157690970 5619400 169066..170193 1 NC_009848.1 hypothetical protein 170193 5619400 BPUM_0173 Bacillus pumilus SAFR-032 hypothetical protein YP_001485432.1 169066 D 315750 CDS YP_001485433.1 157690971 5619401 170355..170726 1 NC_009848.1 GntR family transcriptional regulator 170726 5619401 BPUM_0174 Bacillus pumilus SAFR-032 GntR family transcriptional regulator YP_001485433.1 170355 D 315750 CDS YP_001485434.1 157690972 5619402 170732..171607 1 NC_009848.1 ABC transporter ATP-binding protein 171607 5619402 BPUM_0175 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001485434.1 170732 D 315750 CDS YP_001485435.1 157690973 5619403 171591..172196 1 NC_009848.1 ABC transporter ATP-binding protein 172196 5619403 BPUM_0176 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001485435.1 171591 D 315750 CDS YP_001485436.1 157690974 5619404 172384..172599 1 NC_009848.1 transcriptional regulator 172599 5619404 BPUM_0177 Bacillus pumilus SAFR-032 transcriptional regulator YP_001485436.1 172384 D 315750 CDS YP_001485437.1 157690975 5619405 172596..172895 1 NC_009848.1 hypothetical protein 172895 5619405 BPUM_0178 Bacillus pumilus SAFR-032 hypothetical protein YP_001485437.1 172596 D 315750 CDS YP_001485438.1 157690976 5619406 172951..173898 1 NC_009848.1 alpha/beta fold family hydrolase 173898 5619406 BPUM_0179 Bacillus pumilus SAFR-032 alpha/beta fold family hydrolase YP_001485438.1 172951 D 315750 CDS YP_001485439.1 157690977 5619407 174128..175516 1 NC_009848.1 YbdP; APC family amino acid-polyamine-organocation transporter 175516 ybxG 5619407 ybxG Bacillus pumilus SAFR-032 APC family amino acid-polyamine-organocation transporter YP_001485439.1 174128 D 315750 CDS YP_001485440.1 157690978 5619408 complement(175555..176436) 1 NC_009848.1 glycerophosphoryl diester phosphodiesterase YbeD; glycerophosphodiester phosphodiesterase 176436 5619408 BPUM_0181 Bacillus pumilus SAFR-032 glycerophosphodiester phosphodiesterase YP_001485440.1 175555 R 315750 CDS YP_001485441.1 157690979 5619409 complement(176529..177863) 1 NC_009848.1 major facilitator superfamily glycerol-3-phosphate:cation symporter 177863 glpT 5619409 glpT Bacillus pumilus SAFR-032 major facilitator superfamily glycerol-3-phosphate:cation symporter YP_001485441.1 176529 R 315750 CDS YP_001485442.1 157690980 5619410 177891..178049 1 NC_009848.1 hypothetical protein 178049 5619410 BPUM_0183 Bacillus pumilus SAFR-032 hypothetical protein YP_001485442.1 177891 D 315750 CDS YP_001485443.1 157690981 5619411 complement(178090..178860) 1 NC_009848.1 possible lytic transglycosylase YomI; peptidyl-prolyl isomerase 178860 5619411 BPUM_0184 Bacillus pumilus SAFR-032 peptidyl-prolyl isomerase YP_001485443.1 178090 R 315750 CDS YP_001485444.1 157690982 5619412 178835..178996 1 NC_009848.1 hypothetical protein 178996 5619412 BPUM_0185 Bacillus pumilus SAFR-032 hypothetical protein YP_001485444.1 178835 D 315750 CDS YP_001485445.1 157690983 5619413 complement(179002..181065) 1 NC_009848.1 possible carboxypeptidase; thioredoxin 181065 yyaL 5619413 yyaL Bacillus pumilus SAFR-032 thioredoxin YP_001485445.1 179002 R 315750 CDS YP_001485446.1 157690984 5619414 181488..181697 1 NC_009848.1 hypothetical protein 181697 5619414 BPUM_0187 Bacillus pumilus SAFR-032 hypothetical protein YP_001485446.1 181488 D 315750 CDS YP_001485447.1 157690985 5619415 complement(181828..182334) 1 NC_009848.1 hypothetical protein 182334 5619415 BPUM_0188 Bacillus pumilus SAFR-032 hypothetical protein YP_001485447.1 181828 R 315750 CDS YP_001485448.1 157690986 5619416 182508..182768 1 NC_009848.1 hypothetical protein 182768 yrkD 5619416 yrkD Bacillus pumilus SAFR-032 hypothetical protein YP_001485448.1 182508 D 315750 CDS YP_001485449.1 157690987 5619417 182893..183375 1 NC_009848.1 hypothetical protein 183375 yrkE 5619417 yrkE Bacillus pumilus SAFR-032 hypothetical protein YP_001485449.1 182893 D 315750 CDS YP_001485450.1 157690988 5619418 183390..183743 1 NC_009848.1 rhodanese-domain-containing protein 183743 5619418 BPUM_0191 Bacillus pumilus SAFR-032 rhodanese-domain-containing protein YP_001485450.1 183390 D 315750 CDS YP_001485451.1 157690989 5619419 183791..184351 1 NC_009848.1 response regulator 184351 yrkF 5619419 yrkF Bacillus pumilus SAFR-032 response regulator YP_001485451.1 183791 D 315750 CDS YP_001485452.1 157690990 5619420 184366..185493 1 NC_009848.1 zinc (Zn) dependent hydrolase 185493 5619420 BPUM_0193 Bacillus pumilus SAFR-032 zinc (Zn) dependent hydrolase YP_001485452.1 184366 D 315750 CDS YP_001485453.1 157690991 5619421 185527..185757 1 NC_009848.1 response regulator 185757 yrkI 5619421 yrkI Bacillus pumilus SAFR-032 response regulator YP_001485453.1 185527 D 315750 CDS YP_001485454.1 157690992 5619422 185816..186592 1 NC_009848.1 hypothetical protein 186592 yrkJ 5619422 yrkJ Bacillus pumilus SAFR-032 hypothetical protein YP_001485454.1 185816 D 315750 CDS YP_001485455.1 157690993 5619423 complement(186628..186804) 1 NC_009848.1 hypothetical protein 186804 5619423 BPUM_0196 Bacillus pumilus SAFR-032 hypothetical protein YP_001485455.1 186628 R 315750 CDS YP_001485456.1 157690994 5619424 complement(186939..188372) 1 NC_009848.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 188372 proS2 5619424 proS2 Bacillus pumilus SAFR-032 prolyl-tRNA synthetase YP_001485456.1 186939 R 315750 CDS YP_001485457.1 157690995 5619425 188946..190118 1 NC_009848.1 major facilitator superfamily transporter 190118 ydhL 5619425 ydhL Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001485457.1 188946 D 315750 CDS YP_001485458.1 157690996 5619426 complement(190159..191004) 1 NC_009848.1 acetyltransferase 191004 5619426 BPUM_0199 Bacillus pumilus SAFR-032 acetyltransferase YP_001485458.1 190159 R 315750 CDS YP_001485459.1 157690997 5619427 191142..191600 1 NC_009848.1 MarR family transcriptional regulator 191600 5619427 BPUM_0200 Bacillus pumilus SAFR-032 MarR family transcriptional regulator YP_001485459.1 191142 D 315750 CDS YP_001485460.1 157690998 5619428 191651..191956 1 NC_009848.1 hypothetical protein 191956 5619428 BPUM_0201 Bacillus pumilus SAFR-032 hypothetical protein YP_001485460.1 191651 D 315750 CDS YP_001485461.1 157690999 5619429 191953..192414 1 NC_009848.1 hypothetical protein 192414 5619429 BPUM_0202 Bacillus pumilus SAFR-032 hypothetical protein YP_001485461.1 191953 D 315750 CDS YP_001485462.1 157691000 5619430 192849..193676 1 NC_009848.1 aldo/keto reductase 193676 yvgN 5619430 yvgN Bacillus pumilus SAFR-032 aldo/keto reductase YP_001485462.1 192849 D 315750 CDS YP_001485463.1 157691001 5619431 complement(193716..194801) 1 NC_009848.1 glycerol dehydrogenase 194801 gldA 5619431 gldA Bacillus pumilus SAFR-032 glycerol dehydrogenase YP_001485463.1 193716 R 315750 CDS YP_001485464.1 157691002 5619432 194988..195956 1 NC_009848.1 hypothetical protein 195956 ybfQ 5619432 ybfQ Bacillus pumilus SAFR-032 hypothetical protein YP_001485464.1 194988 D 315750 CDS YP_001485465.1 157691003 5619433 196283..197902 1 NC_009848.1 APC family amino acid-polyamine-organocation transporter 197902 ybeC 5619433 ybeC Bacillus pumilus SAFR-032 APC family amino acid-polyamine-organocation transporter YP_001485465.1 196283 D 315750 CDS YP_001485466.1 157691004 5619434 complement(197937..198137) 1 NC_009848.1 hypothetical protein 198137 5619434 BPUM_0207 Bacillus pumilus SAFR-032 hypothetical protein YP_001485466.1 197937 R 315750 CDS YP_001485467.1 157691005 5619435 198323..199159 1 NC_009848.1 transcriptional antiterminator 199159 5619435 BPUM_0208 Bacillus pumilus SAFR-032 transcriptional antiterminator YP_001485467.1 198323 D 315750 CDS YP_001485468.1 157691006 5619436 199394..201253 1 NC_009848.1 protein-N(pi)-phosphohistidine--sugar phosphotransferase SytA; PTS family glucose/glucoside (glc) porter component IIBCA 201253 5619436 BPUM_0209 Bacillus pumilus SAFR-032 PTS family glucose/glucoside (glc) porter component IIBCA YP_001485468.1 199394 D 315750 CDS YP_001485469.1 157691007 5619437 201272..202693 1 NC_009848.1 family 1 glycosyl hydrolase 202693 5619437 BPUM_0210 Bacillus pumilus SAFR-032 family 1 glycosyl hydrolase YP_001485469.1 201272 D 315750 CDS YP_001485470.1 157691008 5619438 203164..203901 1 NC_009848.1 hypothetical protein 203901 5619438 BPUM_0211 Bacillus pumilus SAFR-032 hypothetical protein YP_001485470.1 203164 D 315750 CDS YP_001485471.1 157691009 5619439 complement(203909..204226) 1 NC_009848.1 hypothetical protein 204226 5619439 BPUM_0212 Bacillus pumilus SAFR-032 hypothetical protein YP_001485471.1 203909 R 315750 CDS YP_001485472.1 157691010 5619440 204527..204943 1 NC_009848.1 rifampin ADP-ribosyl transferase 204943 5619440 BPUM_0213 Bacillus pumilus SAFR-032 rifampin ADP-ribosyl transferase YP_001485472.1 204527 D 315750 CDS YP_001485473.1 157691011 5619441 complement(205002..206921) 1 NC_009848.1 transcription antiterminator 206921 5619441 BPUM_0214 Bacillus pumilus SAFR-032 transcription antiterminator YP_001485473.1 205002 R 315750 CDS YP_001485474.1 157691012 5619442 complement(206918..207802) 1 NC_009848.1 fructokinase 207802 ydhR 5619442 ydhR Bacillus pumilus SAFR-032 fructokinase YP_001485474.1 206918 R 315750 CDS YP_001485475.1 157691013 5619443 complement(207860..210523) 1 NC_009848.1 alpha-mannosidase 210523 5619443 BPUM_0216 Bacillus pumilus SAFR-032 alpha-mannosidase YP_001485475.1 207860 R 315750 CDS YP_001485476.1 157691014 5619444 complement(210552..211670) 1 NC_009848.1 PTS family fructose/mannitol (fru) porter component IIC 211670 5619444 BPUM_0217 Bacillus pumilus SAFR-032 PTS family fructose/mannitol (fru) porter component IIC YP_001485476.1 210552 R 315750 CDS YP_001485477.1 157691015 5619445 complement(211710..212036) 1 NC_009848.1 PTS family fructose/mannitol (fru) porter component IIB 212036 5619445 BPUM_0218 Bacillus pumilus SAFR-032 PTS family fructose/mannitol (fru) porter component IIB YP_001485477.1 211710 R 315750 CDS YP_001485478.1 157691016 5619446 complement(212033..212491) 1 NC_009848.1 PTS family fructose/mannitol (fru) porter component IIA 212491 5619446 BPUM_0219 Bacillus pumilus SAFR-032 PTS family fructose/mannitol (fru) porter component IIA YP_001485478.1 212033 R 315750 CDS YP_001485479.1 157691017 5619447 212733..215402 1 NC_009848.1 possible subtilisin; serine protease 215402 wprA 5619447 wprA Bacillus pumilus SAFR-032 serine protease YP_001485479.1 212733 D 315750 CDS YP_001485480.1 157691018 5619448 215509..215991 1 NC_009848.1 hypothetical protein 215991 ylqB 5619448 ylqB Bacillus pumilus SAFR-032 hypothetical protein YP_001485480.1 215509 D 315750 CDS YP_001485481.1 157691019 5619449 complement(216335..216955) 1 NC_009848.1 hypothetical protein 216955 5619449 BPUM_0222 Bacillus pumilus SAFR-032 hypothetical protein YP_001485481.1 216335 R 315750 CDS YP_001485482.1 157691020 5619450 complement(217077..218480) 1 NC_009848.1 APC family amino acid-polyamine-organocation transporter 218480 ybgF 5619450 ybgF Bacillus pumilus SAFR-032 APC family amino acid-polyamine-organocation transporter YP_001485482.1 217077 R 315750 CDS YP_001485483.1 157691021 5619451 complement(218527..219465) 1 NC_009848.1 converts homocysteine and S-adenosyl-methionine to methionine and S-adenosyl-homocysteine or S-methyl-methionine and homocysteine to two methionines; homocysteine methyltransferase 219465 mmuM 5619451 mmuM Bacillus pumilus SAFR-032 homocysteine methyltransferase YP_001485483.1 218527 R 315750 CDS YP_001485484.1 157691022 5619453 220729..221046 1 NC_009848.1 transcriptional regulator 221046 5619453 BPUM_0226 Bacillus pumilus SAFR-032 transcriptional regulator YP_001485484.1 220729 D 315750 CDS YP_001485485.1 157691023 5619454 221039..221626 1 NC_009848.1 hypothetical protein 221626 5619454 BPUM_0227 Bacillus pumilus SAFR-032 hypothetical protein YP_001485485.1 221039 D 315750 CDS YP_001485486.1 157691024 5619455 221623..221793 1 NC_009848.1 hypothetical protein 221793 5619455 BPUM_0228 Bacillus pumilus SAFR-032 hypothetical protein YP_001485486.1 221623 D 315750 CDS YP_001485487.1 157691025 5619456 complement(222003..223220) 1 NC_009848.1 major facilitator superfamily multidrug:cation symporter 223220 tcaB 5619456 tcaB Bacillus pumilus SAFR-032 major facilitator superfamily multidrug:cation symporter YP_001485487.1 222003 R 315750 CDS YP_001485488.1 157691026 5619457 223433..223981 1 NC_009848.1 acetyltransferase 223981 5619457 BPUM_0230 Bacillus pumilus SAFR-032 acetyltransferase YP_001485488.1 223433 D 315750 CDS YP_001485489.1 157691027 5619458 complement(224028..224231) 1 NC_009848.1 hypothetical protein 224231 5619458 BPUM_0231 Bacillus pumilus SAFR-032 hypothetical protein YP_001485489.1 224028 R 315750 CDS YP_001485490.1 157691028 5619459 224346..224885 1 NC_009848.1 hypothetical protein 224885 5619459 BPUM_0232 Bacillus pumilus SAFR-032 hypothetical protein YP_001485490.1 224346 D 315750 CDS YP_001485491.1 157691029 5619460 complement(224925..226556) 1 NC_009848.1 possible subtilisin; serine protease 226556 epr 5619460 epr Bacillus pumilus SAFR-032 serine protease YP_001485491.1 224925 R 315750 CDS YP_001485492.1 157691030 5619461 226718..228205 1 NC_009848.1 amidase 228205 5619461 BPUM_0234 Bacillus pumilus SAFR-032 amidase YP_001485492.1 226718 D 315750 CDS YP_001485493.1 157691031 5619462 228243..228806 1 NC_009848.1 transcriptional regulator 228806 yxaF 5619462 yxaF Bacillus pumilus SAFR-032 transcriptional regulator YP_001485493.1 228243 D 315750 CDS YP_001485494.1 157691032 5619463 228887..229909 1 NC_009848.1 dioxygenase 229909 yxaG 5619463 yxaG Bacillus pumilus SAFR-032 dioxygenase YP_001485494.1 228887 D 315750 CDS YP_001485495.1 157691033 5619464 230059..231192 1 NC_009848.1 S-(hydroxymethyl)glutathione dehydrogenase 231192 adhB 5619464 adhB Bacillus pumilus SAFR-032 S-(hydroxymethyl)glutathione dehydrogenase YP_001485495.1 230059 D 315750 CDS YP_001485496.1 157691034 5619465 complement(231215..231652) 1 NC_009848.1 transcriptional regulator 231652 5619465 BPUM_0238 Bacillus pumilus SAFR-032 transcriptional regulator YP_001485496.1 231215 R 315750 CDS YP_001485497.1 157691035 5619466 231914..233422 1 NC_009848.1 AMP-dependent synthetase/ligase; long-chain-fatty-acid--CoA ligase 233422 ydaB 5619466 ydaB Bacillus pumilus SAFR-032 long-chain-fatty-acid--CoA ligase YP_001485497.1 231914 D 315750 CDS YP_001485498.1 157691036 5619467 233489..234871 1 NC_009848.1 APC family amino acid-polyamine-organocation transporter 234871 5619467 BPUM_0240 Bacillus pumilus SAFR-032 APC family amino acid-polyamine-organocation transporter YP_001485498.1 233489 D 315750 CDS YP_001485499.1 157691037 5619468 234972..235337 1 NC_009848.1 hypothetical protein 235337 5619468 BPUM_0241 Bacillus pumilus SAFR-032 hypothetical protein YP_001485499.1 234972 D 315750 CDS YP_001485500.1 157691038 5619469 235646..236506 1 NC_009848.1 S33 family non-peptidase; alpha/beta fold family hydrolase 236506 yfhM 5619469 yfhM Bacillus pumilus SAFR-032 alpha/beta fold family hydrolase YP_001485500.1 235646 D 315750 CDS YP_001485501.1 157691039 5619470 complement(236546..237961) 1 NC_009848.1 ybgH; AGCS family alanine or glycine:sodium (Na+) or proton (H+) symporter 237961 glnT 5619470 glnT Bacillus pumilus SAFR-032 AGCS family alanine or glycine:sodium (Na+) or proton (H+) symporter YP_001485501.1 236546 R 315750 CDS YP_001485502.1 157691040 5619471 complement(237992..238972) 1 NC_009848.1 catalyzes the formation of glutamate from glutamine; glutaminase 238972 glsA1 5619471 glsA1 Bacillus pumilus SAFR-032 glutaminase YP_001485502.1 237992 R 315750 CDS YP_001485503.1 157691041 5619472 239490..240776 1 NC_009848.1 sensor histidine kinase 240776 ycbA 5619472 ycbA Bacillus pumilus SAFR-032 sensor histidine kinase YP_001485503.1 239490 D 315750 CDS YP_001485504.1 157691042 5619473 240781..241722 1 NC_009848.1 response regulator 241722 ycbB 5619473 ycbB Bacillus pumilus SAFR-032 response regulator YP_001485504.1 240781 D 315750 CDS YP_001485505.1 157691043 5619474 241914..242999 1 NC_009848.1 hypothetical protein 242999 yccF 5619474 yccF Bacillus pumilus SAFR-032 hypothetical protein YP_001485505.1 241914 D 315750 CDS YP_001485506.1 157691044 5619475 complement(243054..244094) 1 NC_009848.1 lipoprotein 244094 5619475 BPUM_0248 Bacillus pumilus SAFR-032 lipoprotein YP_001485506.1 243054 R 315750 CDS YP_001485507.1 157691045 5619476 244527..245420 1 NC_009848.1 dehydrogenase 245420 yccK 5619476 yccK Bacillus pumilus SAFR-032 dehydrogenase YP_001485507.1 244527 D 315750 CDS YP_001485508.1 157691046 5619477 complement(245449..246414) 1 NC_009848.1 sensor histidine kinase 246414 yccG 5619477 yccG Bacillus pumilus SAFR-032 sensor histidine kinase YP_001485508.1 245449 R 315750 CDS YP_001485509.1 157691047 5619478 complement(246426..247127) 1 NC_009848.1 response regulator 247127 yccH 5619478 yccH Bacillus pumilus SAFR-032 response regulator YP_001485509.1 246426 R 315750 CDS YP_001485510.1 157691048 5619479 247289..248029 1 NC_009848.1 sodium (Na+) ABC transporter ATP binding protein 248029 natA 5619479 natA Bacillus pumilus SAFR-032 sodium (Na+) ABC transporter ATP binding protein YP_001485510.1 247289 D 315750 CDS YP_001485511.1 157691049 5619480 248029..249204 1 NC_009848.1 sodium (Na+) ABC transporter ATP binding protein 249204 natB 5619480 natB Bacillus pumilus SAFR-032 sodium (Na+) ABC transporter ATP binding protein YP_001485511.1 248029 D 315750 CDS YP_001485512.1 157691050 5619481 249343..249681 1 NC_009848.1 hypothetical protein 249681 5619481 BPUM_0254 Bacillus pumilus SAFR-032 hypothetical protein YP_001485512.1 249343 D 315750 CDS YP_001485513.1 157691051 5619482 complement(249727..250785) 1 NC_009848.1 spore lipoprotein YcdA 250785 ycdA 5619482 ycdA Bacillus pumilus SAFR-032 spore lipoprotein YcdA YP_001485513.1 249727 R 315750 CDS YP_001485514.1 157691052 5619483 251324..251752 1 NC_009848.1 corex lytic enzyme YcbQ; spore germination cell wall hydrolase 251752 cwlJ 5619483 cwlJ Bacillus pumilus SAFR-032 spore germination cell wall hydrolase YP_001485514.1 251324 D 315750 CDS YP_001485515.1 157691053 5619484 251872..252651 1 NC_009848.1 short chain dehydrogenase/reductase 252651 ycdF 5619484 ycdF Bacillus pumilus SAFR-032 short chain dehydrogenase/reductase YP_001485515.1 251872 D 315750 CDS YP_001485516.1 157691054 5619485 complement(252672..253712) 1 NC_009848.1 acyltransferase 253712 5619485 BPUM_0258 Bacillus pumilus SAFR-032 acyltransferase YP_001485516.1 252672 R 315750 CDS YP_001485517.1 157691055 5619486 complement(253922..254914) 1 NC_009848.1 monooxygenase 254914 5619486 BPUM_0259 Bacillus pumilus SAFR-032 monooxygenase YP_001485517.1 253922 R 315750 CDS YP_001485518.1 157691056 5619487 255327..255929 1 NC_009848.1 tellurium resistance protein 255929 yceC 5619487 yceC Bacillus pumilus SAFR-032 tellurium resistance protein YP_001485518.1 255327 D 315750 CDS YP_001485519.1 157691057 5619488 255950..256531 1 NC_009848.1 TerD family tellurium resistance protein 256531 yceD 5619488 yceD Bacillus pumilus SAFR-032 TerD family tellurium resistance protein YP_001485519.1 255950 D 315750 CDS YP_001485520.1 157691058 5619489 256573..257151 1 NC_009848.1 TerD family tellurium resistance protein 257151 yceE 5619489 yceE Bacillus pumilus SAFR-032 TerD family tellurium resistance protein YP_001485520.1 256573 D 315750 CDS YP_001485521.1 157691059 5619490 257293..258072 1 NC_009848.1 TerC family membrane protein 258072 5619490 BPUM_0263 Bacillus pumilus SAFR-032 TerC family membrane protein YP_001485521.1 257293 D 315750 CDS YP_001485522.1 157691060 5619491 258167..259357 1 NC_009848.1 citE; ATP/GTP-binding protein 259357 5619491 BPUM_0264 Bacillus pumilus SAFR-032 ATP/GTP-binding protein YP_001485522.1 258167 D 315750 CDS YP_001485523.1 157691061 5619492 259347..260678 1 NC_009848.1 hypothetical protein 260678 5619492 BPUM_0265 Bacillus pumilus SAFR-032 hypothetical protein YP_001485523.1 259347 D 315750 CDS YP_001485524.1 157691062 5619493 260671..261780 1 NC_009848.1 hypothetical protein 261780 5619493 BPUM_0266 Bacillus pumilus SAFR-032 hypothetical protein YP_001485524.1 260671 D 315750 CDS YP_001485525.1 157691063 5619494 261777..262592 1 NC_009848.1 hypothetical protein 262592 5619494 BPUM_0267 Bacillus pumilus SAFR-032 hypothetical protein YP_001485525.1 261777 D 315750 CDS YP_001485526.1 157691064 5619495 262663..264279 1 NC_009848.1 tellurium resistance protein 264279 5619495 BPUM_0268 Bacillus pumilus SAFR-032 tellurium resistance protein YP_001485526.1 262663 D 315750 CDS YP_001485527.1 157691065 5619496 264294..265388 1 NC_009848.1 toxic anion resistance protein 265388 yceH 5619496 yceH Bacillus pumilus SAFR-032 toxic anion resistance protein YP_001485527.1 264294 D 315750 CDS YP_001485528.1 157691066 5619497 265789..267054 1 NC_009848.1 glycine betaine ABC transporter ATP-binding protein 267054 opuAA 5619497 opuAA Bacillus pumilus SAFR-032 glycine betaine ABC transporter ATP-binding protein YP_001485528.1 265789 D 315750 CDS YP_001485529.1 157691067 5619498 267065..267910 1 NC_009848.1 glycine betaine ABC transporter membrane protein 267910 opuAB 5619498 opuAB Bacillus pumilus SAFR-032 glycine betaine ABC transporter membrane protein YP_001485529.1 267065 D 315750 CDS YP_001485530.1 157691068 5619499 267910..268791 1 NC_009848.1 glycine betaine ABC transporter binding protein 268791 opuAC 5619499 opuAC Bacillus pumilus SAFR-032 glycine betaine ABC transporter binding protein YP_001485530.1 267910 D 315750 CDS YP_001485531.1 157691069 5619500 268831..269655 1 NC_009848.1 peptidase 269655 5619500 BPUM_0273 Bacillus pumilus SAFR-032 peptidase YP_001485531.1 268831 D 315750 CDS YP_001485532.1 157691070 5619501 269780..270502 1 NC_009848.1 short chain dehydrogenase/reductase 270502 5619501 BPUM_0274 Bacillus pumilus SAFR-032 short chain dehydrogenase/reductase YP_001485532.1 269780 D 315750 CDS YP_001485533.1 157691071 5619502 complement(270748..271875) 1 NC_009848.1 amidohydrolase 271875 amhX 5619502 amhX Bacillus pumilus SAFR-032 amidohydrolase YP_001485533.1 270748 R 315750 CDS YP_001485534.1 157691072 5619503 272029..273459 1 NC_009848.1 DcuC; major facilitator superfamily transporter 273459 ycgA 5619503 ycgA Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001485534.1 272029 D 315750 CDS YP_001485535.1 157691073 5619504 273674..274621 1 NC_009848.1 Converts (S)-lactate and NAD(+) to pyruvate and NADH; L-lactate dehydrogenase 274621 ldh 5619504 ldh Bacillus pumilus SAFR-032 L-lactate dehydrogenase YP_001485535.1 273674 D 315750 CDS YP_001485536.1 157691074 5619505 274661..276283 1 NC_009848.1 LctP family L-lactate permease 276283 lctP 5619505 lctP Bacillus pumilus SAFR-032 LctP family L-lactate permease YP_001485536.1 274661 D 315750 CDS YP_001485537.1 157691075 5619506 complement(276530..277519) 1 NC_009848.1 LacI family transcriptional regulator 277519 yhjM 5619506 yhjM Bacillus pumilus SAFR-032 LacI family transcriptional regulator YP_001485537.1 276530 R 315750 CDS YP_001485538.1 157691076 5619507 277629..278954 1 NC_009848.1 pyridoxal-phosphate-dependent aminotransferase 278954 yhjL 5619507 yhjL Bacillus pumilus SAFR-032 pyridoxal-phosphate-dependent aminotransferase YP_001485538.1 277629 D 315750 CDS YP_001485539.1 157691077 5619508 278929..279795 1 NC_009848.1 HAD family hydrolase 279795 yhjK 5619508 yhjK Bacillus pumilus SAFR-032 HAD family hydrolase YP_001485539.1 278929 D 315750 CDS YP_001485540.1 157691078 5619509 279792..280838 1 NC_009848.1 GFO/IDH/MocA family dehydrogenase 280838 yhjJ 5619509 yhjJ Bacillus pumilus SAFR-032 GFO/IDH/MocA family dehydrogenase YP_001485540.1 279792 D 315750 CDS YP_001485541.1 157691079 5619510 280893..282080 1 NC_009848.1 spore transporter YhjI; major facilitator superfamily glucose/mannose:H(+) symporter 282080 glcP 5619510 glcP Bacillus pumilus SAFR-032 major facilitator superfamily glucose/mannose:H(+) symporter YP_001485541.1 280893 D 315750 CDS YP_001485542.1 157691080 5619511 282193..282822 1 NC_009848.1 possible lysine exporter protein; homoserine/threonine resistance transporter 282822 ycgF 5619511 ycgF Bacillus pumilus SAFR-032 homoserine/threonine resistance transporter YP_001485542.1 282193 D 315750 CDS YP_001485543.1 157691081 5619512 282923..283324 1 NC_009848.1 hypothetical protein 283324 5619512 BPUM_0285 Bacillus pumilus SAFR-032 hypothetical protein YP_001485543.1 282923 D 315750 CDS YP_001485544.1 157691082 5619513 283505..284263 1 NC_009848.1 hypothetical protein 284263 yqcI 5619513 yqcI Bacillus pumilus SAFR-032 hypothetical protein YP_001485544.1 283505 D 315750 CDS YP_001485545.1 157691083 5619514 complement(284258..285610) 1 NC_009848.1 APC family amino acid-polyamine-organocation transporter 285610 ycgH 5619514 ycgH Bacillus pumilus SAFR-032 APC family amino acid-polyamine-organocation transporter YP_001485545.1 284258 R 315750 CDS YP_001485546.1 157691084 5619515 285690..286286 1 NC_009848.1 hypothetical protein 286286 ycgI 5619515 ycgI Bacillus pumilus SAFR-032 hypothetical protein YP_001485546.1 285690 D 315750 CDS YP_001485547.1 157691085 5619516 286485..287306 1 NC_009848.1 catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 287306 nadE 5619516 nadE Bacillus pumilus SAFR-032 NAD synthetase YP_001485547.1 286485 D 315750 CDS YP_001485548.1 157691086 5619517 287441..287998 1 NC_009848.1 catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 287998 aroK 5619517 aroK Bacillus pumilus SAFR-032 shikimate kinase YP_001485548.1 287441 D 315750 CDS YP_001485549.1 157691087 5619518 288360..289307 1 NC_009848.1 dihydrodipicolinate synthase 289307 dap1 5619518 dap1 Bacillus pumilus SAFR-032 dihydrodipicolinate synthase YP_001485549.1 288360 D 315750 CDS YP_001485550.1 157691088 5619519 289385..290392 1 NC_009848.1 transcriptional regulator 290392 5619519 BPUM_0292 Bacillus pumilus SAFR-032 transcriptional regulator YP_001485550.1 289385 D 315750 CDS YP_001485551.1 157691089 5619520 290513..291889 1 NC_009848.1 major facilitator superfamily transporter 291889 5619520 BPUM_0293 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001485551.1 290513 D 315750 CDS YP_001485552.1 157691090 5619522 292978..293901 1 NC_009848.1 LysR family transcriptional regulator 293901 ycgK 5619522 ycgK Bacillus pumilus SAFR-032 LysR family transcriptional regulator YP_001485552.1 292978 D 315750 CDS YP_001485553.1 157691091 5619523 complement(293947..294732) 1 NC_009848.1 cyanide hydratase 294732 ykrU 5619523 ykrU Bacillus pumilus SAFR-032 cyanide hydratase YP_001485553.1 293947 R 315750 CDS YP_001485554.1 157691092 5619524 294970..295926 1 NC_009848.1 acetyl xylan esterase; cephalosporin-C deacetylase 295926 cah 5619524 cah Bacillus pumilus SAFR-032 cephalosporin-C deacetylase YP_001485554.1 294970 D 315750 CDS YP_001485555.1 157691093 5619525 complement(296165..296479) 1 NC_009848.1 hypothetical protein 296479 5619525 BPUM_0298 Bacillus pumilus SAFR-032 hypothetical protein YP_001485555.1 296165 R 315750 CDS YP_001485556.1 157691094 5619526 296573..297343 1 NC_009848.1 hypothetical protein 297343 ycgL 5619526 ycgL Bacillus pumilus SAFR-032 hypothetical protein YP_001485556.1 296573 D 315750 CDS YP_001485557.1 157691095 5619527 297504..298421 1 NC_009848.1 proline dehydrogenase 298421 ycgM 5619527 ycgM Bacillus pumilus SAFR-032 proline dehydrogenase YP_001485557.1 297504 D 315750 CDS YP_001485558.1 157691096 5619528 298445..299992 1 NC_009848.1 catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate; 1-pyrroline-5-carboxylate dehydrogenase 299992 ycgN 5619528 ycgN Bacillus pumilus SAFR-032 1-pyrroline-5-carboxylate dehydrogenase YP_001485558.1 298445 D 315750 CDS YP_001485559.1 157691097 5619529 300119..301351 1 NC_009848.1 possible transcriptional regulator; hypothetical protein 301351 ycgP 5619529 ycgP Bacillus pumilus SAFR-032 hypothetical protein YP_001485559.1 300119 D 315750 CDS YP_001485560.1 157691098 5619530 301473..302771 1 NC_009848.1 arsenite-antimonite efflux family transporter membrane protein ArsB 302771 arsB 5619530 arsB Bacillus pumilus SAFR-032 arsenite-antimonite efflux family transporter membrane protein ArsB YP_001485560.1 301473 D 315750 CDS YP_001485561.1 157691099 5619531 complement(302819..303496) 1 NC_009848.1 amino acid ABC transporter ATP-binding protein 303496 yckA 5619531 yckA Bacillus pumilus SAFR-032 amino acid ABC transporter ATP-binding protein YP_001485561.1 302819 R 315750 CDS YP_001485562.1 157691100 5619532 complement(303509..304381) 1 NC_009848.1 amino acid ABC transporter ATP-binding protein 304381 yckB 5619532 yckB Bacillus pumilus SAFR-032 amino acid ABC transporter ATP-binding protein YP_001485562.1 303509 R 315750 CDS YP_001485563.1 157691101 5619533 304562..304891 1 NC_009848.1 hypothetical protein 304891 yckD 5619533 yckD Bacillus pumilus SAFR-032 hypothetical protein YP_001485563.1 304562 D 315750 CDS YP_001485564.1 157691102 5619534 complement(304939..305703) 1 NC_009848.1 beta-lactamase 305703 5619534 BPUM_0307 Bacillus pumilus SAFR-032 beta-lactamase YP_001485564.1 304939 R 315750 CDS YP_001485565.1 157691103 5619535 305819..306235 1 NC_009848.1 Lrp/AsnC family transcriptional regulator 306235 lrpA 5619535 lrpA Bacillus pumilus SAFR-032 Lrp/AsnC family transcriptional regulator YP_001485565.1 305819 D 315750 CDS YP_001485566.1 157691104 5619536 306265..307071 1 NC_009848.1 aminoglycoside N(3')-acetyltransferase 307071 yokD 5619536 yokD Bacillus pumilus SAFR-032 aminoglycoside N(3')-acetyltransferase YP_001485566.1 306265 D 315750 CDS YP_001485567.1 157691105 5619537 complement(307073..307459) 1 NC_009848.1 Competence protein ComJ; DNA-entry nuclease inhibitor 307459 nin 5619537 nin Bacillus pumilus SAFR-032 DNA-entry nuclease inhibitor YP_001485567.1 307073 R 315750 CDS YP_001485568.1 157691106 5619538 complement(307580..309277) 1 NC_009848.1 possible Amt family ammonium or ammonia transporter; methyl-accepting chemotaxis protein 309277 tlpC 5619538 tlpC Bacillus pumilus SAFR-032 methyl-accepting chemotaxis protein YP_001485568.1 307580 R 315750 CDS YP_001485569.1 157691107 5619539 complement(309405..309833) 1 NC_009848.1 competence-specific nuclease ComI; nuclease 309833 nucA 5619539 nucA Bacillus pumilus SAFR-032 nuclease YP_001485569.1 309405 R 315750 CDS YP_001485570.1 157691108 5619540 309836..310231 1 NC_009848.1 hypothetical protein 310231 5619540 BPUM_0313 Bacillus pumilus SAFR-032 hypothetical protein YP_001485570.1 309836 D 315750 CDS YP_001485571.1 157691109 5619541 310201..312270 1 NC_009848.1 hydantoin utilization protein A 312270 5619541 BPUM_0314 Bacillus pumilus SAFR-032 hydantoin utilization protein A YP_001485571.1 310201 D 315750 CDS YP_001485572.1 157691110 5619542 312260..314245 1 NC_009848.1 hydantoin utilization protein B 314245 5619542 BPUM_0315 Bacillus pumilus SAFR-032 hydantoin utilization protein B YP_001485572.1 312260 D 315750 CDS YP_001485573.1 157691111 5619543 314242..315327 1 NC_009848.1 ABC transporter ATP-binding protein 315327 5619543 BPUM_0316 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001485573.1 314242 D 315750 CDS YP_001485574.1 157691112 5619544 315336..316427 1 NC_009848.1 ABC transporter ATP-binding protein 316427 5619544 BPUM_0317 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001485574.1 315336 D 315750 CDS YP_001485575.1 157691113 5619545 316466..317296 1 NC_009848.1 ABC transporter ATP-binding protein 317296 5619545 BPUM_0318 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001485575.1 316466 D 315750 CDS YP_001485576.1 157691114 5619546 318695..329407 1 NC_009848.1 nonribosomal peptide synthetase subunit 329407 5619546 BPUM_0319 Bacillus pumilus SAFR-032 nonribosomal peptide synthetase subunit YP_001485576.1 318695 D 315750 CDS YP_001485577.1 157691115 5619547 329428..340116 1 NC_009848.1 nonribosomal peptide synthetase subunit 340116 5619547 BPUM_0320 Bacillus pumilus SAFR-032 nonribosomal peptide synthetase subunit YP_001485577.1 329428 D 315750 CDS YP_001485578.1 157691116 5619548 340161..343994 1 NC_009848.1 nonribosomal peptide synthetase subunit 343994 5619548 BPUM_0321 Bacillus pumilus SAFR-032 nonribosomal peptide synthetase subunit YP_001485578.1 340161 D 315750 CDS YP_001485579.1 157691117 5619549 344058..354188 1 NC_009848.1 nonribosomal peptide synthetase subunit 354188 5619549 BPUM_0322 Bacillus pumilus SAFR-032 nonribosomal peptide synthetase subunit YP_001485579.1 344058 D 315750 CDS YP_001485580.1 157691118 5619550 354202..362397 1 NC_009848.1 nonribosomal peptide synthetase subunit 362397 5619550 BPUM_0323 Bacillus pumilus SAFR-032 nonribosomal peptide synthetase subunit YP_001485580.1 354202 D 315750 CDS YP_001485581.1 157691119 5619551 362404..363144 1 NC_009848.1 thioesterase 363144 5619551 BPUM_0324 Bacillus pumilus SAFR-032 thioesterase YP_001485581.1 362404 D 315750 CDS YP_001485582.1 157691120 5619552 complement(363180..364094) 1 NC_009848.1 DMT superfamily drug/metabolite transporter 364094 ycxC 5619552 ycxC Bacillus pumilus SAFR-032 DMT superfamily drug/metabolite transporter YP_001485582.1 363180 R 315750 CDS YP_001485583.1 157691121 5619553 364225..365562 1 NC_009848.1 GntR family transcriptional regulator 365562 ycxD 5619553 ycxD Bacillus pumilus SAFR-032 GntR family transcriptional regulator YP_001485583.1 364225 D 315750 CDS YP_001485584.1 157691122 5619554 complement(365559..366251) 1 NC_009848.1 phosphopantetheinyl transferase 366251 sfp 5619554 sfp Bacillus pumilus SAFR-032 phosphopantetheinyl transferase YP_001485584.1 365559 R 315750 CDS YP_001485585.1 157691123 5619555 complement(366341..366931) 1 NC_009848.1 hypothetical protein 366931 5619555 BPUM_0328 Bacillus pumilus SAFR-032 hypothetical protein YP_001485585.1 366341 R 315750 CDS YP_001485586.1 157691124 5619556 complement(367016..367660) 1 NC_009848.1 hypothetical protein 367660 yczE 5619556 yczE Bacillus pumilus SAFR-032 hypothetical protein YP_001485586.1 367016 R 315750 CDS YP_001485587.1 157691125 5619557 complement(367747..367845) 1 NC_009848.1 hypothetical protein 367845 5619557 BPUM_0330 Bacillus pumilus SAFR-032 hypothetical protein YP_001485587.1 367747 R 315750 CDS YP_001485588.1 157691126 5619559 372257..372817 1 NC_009848.1 C60A subfamily peptidase 372817 yhcS1 5619559 yhcS1 Bacillus pumilus SAFR-032 C60A subfamily peptidase YP_001485588.1 372257 D 315750 CDS YP_001485589.1 157691127 5619560 372905..373207 1 NC_009848.1 transcriptional regulator 373207 abrB 5619560 abrB Bacillus pumilus SAFR-032 transcriptional regulator YP_001485589.1 372905 D 315750 CDS YP_001485590.1 157691128 5619561 373812..374198 1 NC_009848.1 hypothetical protein 374198 5619561 BPUM_0334 Bacillus pumilus SAFR-032 hypothetical protein YP_001485590.1 373812 D 315750 CDS YP_001485591.1 157691129 5619562 374230..375210 1 NC_009848.1 hypothetical protein 375210 5619562 BPUM_0335 Bacillus pumilus SAFR-032 hypothetical protein YP_001485591.1 374230 D 315750 CDS YP_001485592.1 157691130 5619563 375216..376502 1 NC_009848.1 ABC transporter ATP-binding protein 376502 5619563 BPUM_0336 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001485592.1 375216 D 315750 CDS YP_001485593.1 157691131 5619564 376503..377177 1 NC_009848.1 ABC transporter ATP-binding protein 377177 5619564 BPUM_0337 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001485593.1 376503 D 315750 CDS YP_001485594.1 157691132 5619565 complement(377358..378101) 1 NC_009848.1 L-cystine ABC transporter ATP-binding protein 378101 yckI 5619565 yckI Bacillus pumilus SAFR-032 L-cystine ABC transporter ATP-binding protein YP_001485594.1 377358 R 315750 CDS YP_001485595.1 157691133 5619566 complement(378114..378806) 1 NC_009848.1 L-cystine ABC transporter membrane protein 378806 yckJ 5619566 yckJ Bacillus pumilus SAFR-032 L-cystine ABC transporter membrane protein YP_001485595.1 378114 R 315750 CDS YP_001485596.1 157691134 5619567 complement(378793..379608) 1 NC_009848.1 spore transporter YckK; L-cystine ABC transporter substrate-binding protein 379608 yckK 5619567 yckK Bacillus pumilus SAFR-032 L-cystine ABC transporter substrate-binding protein YP_001485596.1 378793 R 315750 CDS YP_001485597.1 157691135 5619568 380004..380588 1 NC_009848.1 dienelactone hydrolase 380588 5619568 BPUM_0341 Bacillus pumilus SAFR-032 dienelactone hydrolase YP_001485597.1 380004 D 315750 CDS YP_001485598.1 157691136 5619570 complement(382377..383870) 1 NC_009848.1 POT family proton (H+)-dependent oligopeptide transporter 383870 5619570 BPUM_0343 Bacillus pumilus SAFR-032 POT family proton (H+)-dependent oligopeptide transporter YP_001485598.1 382377 R 315750 CDS YP_001485599.1 157691137 5619571 384110..385918 1 NC_009848.1 hypothetical protein 385918 yclG 5619571 yclG Bacillus pumilus SAFR-032 hypothetical protein YP_001485599.1 384110 D 315750 CDS YP_001485600.1 157691138 5619572 386119..387444 1 NC_009848.1 nitrilotriacetate monoxygenase 387444 yxeK 5619572 yxeK Bacillus pumilus SAFR-032 nitrilotriacetate monoxygenase YP_001485600.1 386119 D 315750 CDS YP_001485601.1 157691139 5619573 387462..387965 1 NC_009848.1 hypothetical protein 387965 yxeL 5619573 yxeL Bacillus pumilus SAFR-032 hypothetical protein YP_001485601.1 387462 D 315750 CDS YP_001485602.1 157691140 5619574 387988..388782 1 NC_009848.1 amino acid ABC transporter ATP-binding protein 388782 yxeM 5619574 yxeM Bacillus pumilus SAFR-032 amino acid ABC transporter ATP-binding protein YP_001485602.1 387988 D 315750 CDS YP_001485603.1 157691141 5619575 388807..389481 1 NC_009848.1 amino acid ABC transporter ATP-binding protein 389481 yxeN 5619575 yxeN Bacillus pumilus SAFR-032 amino acid ABC transporter ATP-binding protein YP_001485603.1 388807 D 315750 CDS YP_001485604.1 157691142 5619576 389494..390240 1 NC_009848.1 amino acid ABC transporter ATP-binding protein 390240 yxeO 5619576 yxeO Bacillus pumilus SAFR-032 amino acid ABC transporter ATP-binding protein YP_001485604.1 389494 D 315750 CDS YP_001485605.1 157691143 5619577 390274..391431 1 NC_009848.1 M20D subfamily unassigned peptidase 391431 yxeP 5619577 yxeP Bacillus pumilus SAFR-032 M20D subfamily unassigned peptidase YP_001485605.1 390274 D 315750 CDS YP_001485606.1 157691144 5619578 391422..392756 1 NC_009848.1 MmgE/PrpD family protein 392756 yxeQ 5619578 yxeQ Bacillus pumilus SAFR-032 MmgE/PrpD family protein YP_001485606.1 391422 D 315750 CDS YP_001485607.1 157691145 5619579 complement(393076..394431) 1 NC_009848.1 transposase 394431 5619579 BPUM_0352 Bacillus pumilus SAFR-032 transposase YP_001485607.1 393076 R 315750 CDS YP_001485608.1 157691146 5619580 394722..395405 1 NC_009848.1 response regulator 395405 5619580 BPUM_0353 Bacillus pumilus SAFR-032 response regulator YP_001485608.1 394722 D 315750 CDS YP_001485609.1 157691147 5619581 395395..396822 1 NC_009848.1 sensor histidine kinase 396822 5619581 BPUM_0354 Bacillus pumilus SAFR-032 sensor histidine kinase YP_001485609.1 395395 D 315750 CDS YP_001485610.1 157691148 5619582 complement(396851..397696) 1 NC_009848.1 hypothetical protein 397696 5619582 BPUM_0355 Bacillus pumilus SAFR-032 hypothetical protein YP_001485610.1 396851 R 315750 CDS YP_001485611.1 157691149 5619583 complement(397861..399237) 1 NC_009848.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase 399237 yclM 5619583 yclM Bacillus pumilus SAFR-032 aspartate kinase YP_001485611.1 397861 R 315750 CDS YP_001485612.1 157691150 5619584 complement(399410..400843) 1 NC_009848.1 major facilitator superfamily multidrug:cation symporter 400843 ycnB 5619584 ycnB Bacillus pumilus SAFR-032 major facilitator superfamily multidrug:cation symporter YP_001485612.1 399410 R 315750 CDS YP_001485613.1 157691151 5619585 complement(400860..401759) 1 NC_009848.1 transcriptional regulator 401759 ycnC 5619585 ycnC Bacillus pumilus SAFR-032 transcriptional regulator YP_001485613.1 400860 R 315750 CDS YP_001485614.1 157691152 5619586 complement(401865..402239) 1 NC_009848.1 hypothetical protein 402239 5619586 BPUM_0359 Bacillus pumilus SAFR-032 hypothetical protein YP_001485614.1 401865 R 315750 CDS YP_001485615.1 157691153 5619587 402352..402663 1 NC_009848.1 transcription regulator ArsR 402663 yczG 5619587 yczG Bacillus pumilus SAFR-032 transcription regulator ArsR YP_001485615.1 402352 D 315750 CDS YP_001485616.1 157691154 5619588 complement(402694..404118) 1 NC_009848.1 GntR family transcriptional regulator 404118 gabR 5619588 gabR Bacillus pumilus SAFR-032 GntR family transcriptional regulator YP_001485616.1 402694 R 315750 CDS YP_001485617.1 157691155 5619589 404227..405543 1 NC_009848.1 catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 405543 gabT 5619589 gabT Bacillus pumilus SAFR-032 4-aminobutyrate aminotransferase YP_001485617.1 404227 D 315750 CDS YP_001485618.1 157691156 5619590 405565..406953 1 NC_009848.1 APC family amino acid-polyamine-organocation transporter 406953 5619590 BPUM_0363 Bacillus pumilus SAFR-032 APC family amino acid-polyamine-organocation transporter YP_001485618.1 405565 D 315750 CDS YP_001485619.1 157691157 5619591 406928..408322 1 NC_009848.1 succinate-semialdehyde dehydrogenase (NAD(P)(+)) 408322 gabD 5619591 gabD Bacillus pumilus SAFR-032 succinate-semialdehyde dehydrogenase (NAD(P)(+)) YP_001485619.1 406928 D 315750 CDS YP_001485620.1 157691158 5619592 complement(408556..409152) 1 NC_009848.1 NAD(P)H dehydrogenase (quinone) 409152 5619592 BPUM_0365 Bacillus pumilus SAFR-032 NAD(P)H dehydrogenase (quinone) YP_001485620.1 408556 R 315750 CDS YP_001485621.1 157691159 5619593 409168..409323 1 NC_009848.1 hypothetical protein 409323 5619593 BPUM_0366 Bacillus pumilus SAFR-032 hypothetical protein YP_001485621.1 409168 D 315750 CDS YP_001485622.1 157691160 5619594 complement(409310..409924) 1 NC_009848.1 hypothetical protein 409924 ycnI 5619594 ycnI Bacillus pumilus SAFR-032 hypothetical protein YP_001485622.1 409310 R 315750 CDS YP_001485623.1 157691161 5619595 complement(409941..411575) 1 NC_009848.1 possible copper (Cu) resistance protein; copper (Cu) export protein 411575 ycnJ 5619595 ycnJ Bacillus pumilus SAFR-032 copper (Cu) export protein YP_001485623.1 409941 R 315750 CDS YP_001485624.1 157691162 5619596 412082..413524 1 NC_009848.1 PTS family mannitol-permease II, BC component 413524 mtlA 5619596 mtlA Bacillus pumilus SAFR-032 PTS family mannitol-permease II, BC component YP_001485624.1 412082 D 315750 CDS YP_001485625.1 157691163 5619597 413621..414055 1 NC_009848.1 possible PTS family mannitol porter component IIA; hypothetical protein 414055 5619597 BPUM_0370 Bacillus pumilus SAFR-032 hypothetical protein YP_001485625.1 413621 D 315750 CDS YP_001485626.1 157691164 5619598 414057..415178 1 NC_009848.1 mannitol-1-phosphate 5-dehydrogenase 415178 mtlD 5619598 mtlD Bacillus pumilus SAFR-032 mannitol-1-phosphate 5-dehydrogenase YP_001485626.1 414057 D 315750 CDS YP_001485627.1 157691165 5619599 415278..417026 1 NC_009848.1 methyl accepting chemotaxis protein 417026 5619599 BPUM_0372 Bacillus pumilus SAFR-032 methyl accepting chemotaxis protein YP_001485627.1 415278 D 315750 CDS YP_001485628.1 157691166 5619600 417253..417645 1 NC_009848.1 hypothetical protein 417645 5619600 BPUM_0373 Bacillus pumilus SAFR-032 hypothetical protein YP_001485628.1 417253 D 315750 CDS YP_001485629.1 157691167 5619601 complement(417677..417916) 1 NC_009848.1 hypothetical protein 417916 yycQ 5619601 yycQ Bacillus pumilus SAFR-032 hypothetical protein YP_001485629.1 417677 R 315750 CDS YP_001485630.1 157691168 5619602 complement(417942..418235) 1 NC_009848.1 hypothetical protein 418235 5619602 BPUM_0375 Bacillus pumilus SAFR-032 hypothetical protein YP_001485630.1 417942 R 315750 CDS YP_001485631.1 157691169 5619603 complement(418260..418637) 1 NC_009848.1 glyoxylase 418637 5619603 BPUM_0376 Bacillus pumilus SAFR-032 glyoxylase YP_001485631.1 418260 R 315750 CDS YP_001485632.1 157691170 5619604 418822..419091 1 NC_009848.1 hypothetical protein 419091 5619604 BPUM_0377 Bacillus pumilus SAFR-032 hypothetical protein YP_001485632.1 418822 D 315750 CDS YP_001485633.1 157691171 5619605 419219..419974 1 NC_009848.1 HAD superfamily hydrolase 419974 ycsE 5619605 ycsE Bacillus pumilus SAFR-032 HAD superfamily hydrolase YP_001485633.1 419219 D 315750 CDS YP_001485634.1 157691172 5619606 420145..420903 1 NC_009848.1 LamB/YcsF family protein 420903 ycsF 5619606 ycsF Bacillus pumilus SAFR-032 LamB/YcsF family protein YP_001485634.1 420145 D 315750 CDS YP_001485635.1 157691173 5619607 420930..422147 1 NC_009848.1 manganese transporter NRAMP 422147 ycsG 5619607 ycsG Bacillus pumilus SAFR-032 manganese transporter NRAMP YP_001485635.1 420930 D 315750 CDS YP_001485636.1 157691174 5619608 422153..422944 1 NC_009848.1 hypothetical protein 422944 ycsI 5619608 ycsI Bacillus pumilus SAFR-032 hypothetical protein YP_001485636.1 422153 D 315750 CDS YP_001485637.1 157691175 5619609 422963..423709 1 NC_009848.1 possible kinase inhibitor KipI; allophanate hydrolase subunit 1 423709 kipI 5619609 kipI Bacillus pumilus SAFR-032 allophanate hydrolase subunit 1 YP_001485637.1 422963 D 315750 CDS YP_001485638.1 157691176 5619610 423706..424719 1 NC_009848.1 possible transcriptional regulator KipA; allophanate hydrolase subunit 2 424719 kipA 5619610 kipA Bacillus pumilus SAFR-032 allophanate hydrolase subunit 2 YP_001485638.1 423706 D 315750 CDS YP_001485639.1 157691177 5619611 424735..425496 1 NC_009848.1 IclR family transcriptional regulator 425496 kipR 5619611 kipR Bacillus pumilus SAFR-032 IclR family transcriptional regulator YP_001485639.1 424735 D 315750 CDS YP_001485640.1 157691178 5619612 complement(425542..426177) 1 NC_009848.1 FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase 426177 acpD 5619612 acpD Bacillus pumilus SAFR-032 azoreductase YP_001485640.1 425542 R 315750 CDS YP_001485641.1 157691179 5619613 426581..427213 1 NC_009848.1 YcsK; lipolytic enzyme LipC 427213 lipC 5619613 lipC Bacillus pumilus SAFR-032 lipolytic enzyme LipC YP_001485641.1 426581 D 315750 CDS YP_001485642.1 157691180 5619614 427303..428382 1 NC_009848.1 choloylglycine hydrolase 428382 5619614 BPUM_0387 Bacillus pumilus SAFR-032 choloylglycine hydrolase YP_001485642.1 427303 D 315750 CDS YP_001485643.1 157691181 5619615 428513..430600 1 NC_009848.1 MtlR transcriptional regulator 430600 mtlR 5619615 mtlR Bacillus pumilus SAFR-032 MtlR transcriptional regulator YP_001485643.1 428513 D 315750 CDS YP_001485644.1 157691182 5619616 complement(430618..431274) 1 NC_009848.1 hypothetical protein 431274 ydaC 5619616 ydaC Bacillus pumilus SAFR-032 hypothetical protein YP_001485644.1 430618 R 315750 CDS YP_001485645.1 157691183 5619617 431385..432254 1 NC_009848.1 short chain dehydrogenase 432254 ydaD 5619617 ydaD Bacillus pumilus SAFR-032 short chain dehydrogenase YP_001485645.1 431385 D 315750 CDS YP_001485646.1 157691184 5619618 432543..432965 1 NC_009848.1 general stress protein 432965 ydaG 5619618 ydaG Bacillus pumilus SAFR-032 general stress protein YP_001485646.1 432543 D 315750 CDS YP_001485647.1 157691185 5619619 complement(432991..433140) 1 NC_009848.1 hypothetical protein 433140 5619619 BPUM_0392 Bacillus pumilus SAFR-032 hypothetical protein YP_001485647.1 432991 R 315750 CDS YP_001485648.1 157691186 5619620 complement(433585..433767) 1 NC_009848.1 hypothetical protein 433767 5619620 BPUM_0393 Bacillus pumilus SAFR-032 hypothetical protein YP_001485648.1 433585 R 315750 CDS YP_001485649.1 157691187 5619621 complement(433781..433999) 1 NC_009848.1 hypothetical protein 433999 5619621 BPUM_0394 Bacillus pumilus SAFR-032 hypothetical protein YP_001485649.1 433781 R 315750 CDS YP_001485650.1 157691188 5619622 434142..436412 1 NC_009848.1 hypothetical protein 436412 5619622 BPUM_0395 Bacillus pumilus SAFR-032 hypothetical protein YP_001485650.1 434142 D 315750 CDS YP_001485651.1 157691189 5619623 complement(436591..436887) 1 NC_009848.1 hypothetical protein 436887 ydzA 5619623 ydzA Bacillus pumilus SAFR-032 hypothetical protein YP_001485651.1 436591 R 315750 CDS YP_001485652.1 157691190 5619624 complement(437024..437698) 1 NC_009848.1 GntR family transcriptional regulator 437698 ydhC 5619624 ydhC Bacillus pumilus SAFR-032 GntR family transcriptional regulator YP_001485652.1 437024 R 315750 CDS YP_001485653.1 157691191 5619625 437736..438017 1 NC_009848.1 hypothetical protein 438017 5619625 BPUM_0398 Bacillus pumilus SAFR-032 hypothetical protein YP_001485653.1 437736 D 315750 CDS YP_001485654.1 157691192 5619626 438114..439169 1 NC_009848.1 catalyzes the formation of oxaloglycolate from tartrate; also catalyzes the formation of pyruvate from malate and glycerate from tartrate; tartrate dehydrogenase 439169 ycsA 5619626 ycsA Bacillus pumilus SAFR-032 tartrate dehydrogenase YP_001485654.1 438114 D 315750 CDS YP_001485655.1 157691193 5619627 439242..441428 1 NC_009848.1 decatenates replicating daughter chromosomes; DNA topoisomerase III 441428 topB 5619627 topB Bacillus pumilus SAFR-032 DNA topoisomerase III YP_001485655.1 439242 D 315750 CDS YP_001485656.1 157691194 5619628 441626..442708 1 NC_009848.1 hypothetical protein 442708 ydaJ 5619628 ydaJ Bacillus pumilus SAFR-032 hypothetical protein YP_001485656.1 441626 D 315750 CDS YP_001485657.1 157691195 5619629 442689..443540 1 NC_009848.1 hypothetical protein 443540 ydaK 5619629 ydaK Bacillus pumilus SAFR-032 hypothetical protein YP_001485657.1 442689 D 315750 CDS YP_001485658.1 157691196 5619630 443530..445245 1 NC_009848.1 hypothetical protein 445245 ydaL 5619630 ydaL Bacillus pumilus SAFR-032 hypothetical protein YP_001485658.1 443530 D 315750 CDS YP_001485659.1 157691197 5619631 445238..446506 1 NC_009848.1 glycosyltransferase 446506 ydaM 5619631 ydaM Bacillus pumilus SAFR-032 glycosyltransferase YP_001485659.1 445238 D 315750 CDS YP_001485660.1 157691198 5619632 446529..448598 1 NC_009848.1 hypothetical protein 448598 ydaN 5619632 ydaN Bacillus pumilus SAFR-032 hypothetical protein YP_001485660.1 446529 D 315750 CDS YP_001485661.1 157691199 5619633 448926..450752 1 NC_009848.1 APC family amino acid-polyamine-organocation transporter 450752 ydaO 5619633 ydaO Bacillus pumilus SAFR-032 APC family amino acid-polyamine-organocation transporter YP_001485661.1 448926 D 315750 CDS YP_001485662.1 157691200 5619634 450823..452544 1 NC_009848.1 catalyzes the formation of acetyl phosphate from pyruvate; pyruvate oxidase 452544 ydaP 5619634 ydaP Bacillus pumilus SAFR-032 pyruvate oxidase YP_001485662.1 450823 D 315750 CDS YP_001485663.1 157691201 5619635 452781..454334 1 NC_009848.1 hypothetical protein 454334 yqcG 5619635 yqcG Bacillus pumilus SAFR-032 hypothetical protein YP_001485663.1 452781 D 315750 CDS YP_001485664.1 157691202 5619636 454339..454818 1 NC_009848.1 hypothetical protein 454818 5619636 BPUM_0409 Bacillus pumilus SAFR-032 hypothetical protein YP_001485664.1 454339 D 315750 CDS YP_001485665.1 157691203 5619637 455086..455310 1 NC_009848.1 hypothetical protein 455310 5619637 BPUM_0410 Bacillus pumilus SAFR-032 hypothetical protein YP_001485665.1 455086 D 315750 CDS YP_001485666.1 157691204 5619638 complement(455351..455614) 1 NC_009848.1 hypothetical protein 455614 5619638 BPUM_0411 Bacillus pumilus SAFR-032 hypothetical protein YP_001485666.1 455351 R 315750 CDS YP_001485667.1 157691205 5619639 complement(455713..456282) 1 NC_009848.1 acetyltransferase 456282 ydaF 5619639 ydaF Bacillus pumilus SAFR-032 acetyltransferase YP_001485667.1 455713 R 315750 CDS YP_001485668.1 157691206 5619640 complement(456353..457630) 1 NC_009848.1 manganese transport protein MntH 457630 mntH 5619640 mntH Bacillus pumilus SAFR-032 manganese transport protein MntH YP_001485668.1 456353 R 315750 CDS YP_001485669.1 157691207 5619641 complement(457853..458113) 1 NC_009848.1 hypothetical protein 458113 ydaS 5619641 ydaS Bacillus pumilus SAFR-032 hypothetical protein YP_001485669.1 457853 R 315750 CDS YP_001485670.1 157691208 5619642 458270..459100 1 NC_009848.1 ABC transporter ATP-binding protein 459100 ydbA 5619642 ydbA Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001485670.1 458270 D 315750 CDS YP_001485671.1 157691209 5619643 complement(459306..460403) 1 NC_009848.1 TRAP-T family tripartite ATP-independent periplasmic binding protein 460403 dctB 5619643 dctB Bacillus pumilus SAFR-032 TRAP-T family tripartite ATP-independent periplasmic binding protein YP_001485671.1 459306 R 315750 CDS YP_001485672.1 157691210 5619644 460627..462090 1 NC_009848.1 histidine kinase 462090 dctS 5619644 dctS Bacillus pumilus SAFR-032 histidine kinase YP_001485672.1 460627 D 315750 CDS YP_001485673.1 157691211 5619645 462087..462770 1 NC_009848.1 possible citrate/malate metabolism transcriptional regulator YdbG; response regulator 462770 dctR 5619645 dctR Bacillus pumilus SAFR-032 response regulator YP_001485673.1 462087 D 315750 CDS YP_001485674.1 157691212 5619646 462895..464163 1 NC_009848.1 involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 464163 dctP 5619646 dctP Bacillus pumilus SAFR-032 C4-dicarboxylate transporter DctA YP_001485674.1 462895 D 315750 CDS YP_001485675.1 157691213 5619647 464373..465395 1 NC_009848.1 hypothetical protein 465395 ydbI 5619647 ydbI Bacillus pumilus SAFR-032 hypothetical protein YP_001485675.1 464373 D 315750 CDS YP_001485676.1 157691214 5619648 465671..466912 1 NC_009848.1 DAACS family dicarboxylate/amino acid:cation symporter 466912 5619648 BPUM_0421 Bacillus pumilus SAFR-032 DAACS family dicarboxylate/amino acid:cation symporter YP_001485676.1 465671 D 315750 CDS YP_001485677.1 157691215 5619649 467049..467975 1 NC_009848.1 ABC transporter ATP-binding protein 467975 ydbJ 5619649 ydbJ Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001485677.1 467049 D 315750 CDS YP_001485678.1 157691216 5619650 467953..468720 1 NC_009848.1 ABC transporter ATP-binding protein 468720 5619650 BPUM_0423 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001485678.1 467953 D 315750 CDS YP_001485679.1 157691217 5619651 468838..469173 1 NC_009848.1 hypothetical protein 469173 ydbL 5619651 ydbL Bacillus pumilus SAFR-032 hypothetical protein YP_001485679.1 468838 D 315750 CDS YP_001485680.1 157691218 5619652 complement(469273..469422) 1 NC_009848.1 hypothetical protein 469422 ydbN 5619652 ydbN Bacillus pumilus SAFR-032 hypothetical protein YP_001485680.1 469273 R 315750 CDS YP_001485681.1 157691219 5619653 complement(469769..470089) 1 NC_009848.1 thioredoxin family protein 470089 ydbP 5619653 ydbP Bacillus pumilus SAFR-032 thioredoxin family protein YP_001485681.1 469769 R 315750 CDS YP_001485682.1 157691220 5619654 470273..471355 1 NC_009848.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 471355 ddl 5619654 ddl Bacillus pumilus SAFR-032 D-alanyl-alanine synthetase A YP_001485682.1 470273 D 315750 CDS YP_001485683.1 157691221 5619655 471437..472801 1 NC_009848.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 472801 murF 5619655 murF Bacillus pumilus SAFR-032 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase YP_001485683.1 471437 D 315750 CDS YP_001485684.1 157691222 5619656 472829..473521 1 NC_009848.1 carboxylesterase 473521 5619656 BPUM_0429 Bacillus pumilus SAFR-032 carboxylesterase YP_001485684.1 472829 D 315750 CDS YP_001485685.1 157691223 5619657 473649..473987 1 NC_009848.1 hypothetical protein 473987 5619657 BPUM_0430 Bacillus pumilus SAFR-032 hypothetical protein YP_001485685.1 473649 D 315750 CDS YP_001485686.1 157691224 5619658 474102..475643 1 NC_009848.1 sporulation-related DEAD-box helicase; ATP-dependent RNA helicase 475643 ydbR 5619658 ydbR Bacillus pumilus SAFR-032 ATP-dependent RNA helicase YP_001485686.1 474102 D 315750 CDS YP_001485687.1 157691225 5619659 475754..476233 1 NC_009848.1 hypothetical protein 476233 ydbS 5619659 ydbS Bacillus pumilus SAFR-032 hypothetical protein YP_001485687.1 475754 D 315750 CDS YP_001485688.1 157691226 5619660 476223..477722 1 NC_009848.1 hypothetical protein 477722 ydbT 5619660 ydbT Bacillus pumilus SAFR-032 hypothetical protein YP_001485688.1 476223 D 315750 CDS YP_001485689.1 157691227 5619661 complement(477779..478384) 1 NC_009848.1 serine peptidase 478384 ydcA 5619661 ydcA Bacillus pumilus SAFR-032 serine peptidase YP_001485689.1 477779 R 315750 CDS YP_001485690.1 157691228 5619662 478479..478844 1 NC_009848.1 Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 478844 acpS 5619662 acpS Bacillus pumilus SAFR-032 4'-phosphopantetheinyl transferase YP_001485690.1 478479 D 315750 CDS YP_001485691.1 157691229 5619663 479014..480021 1 NC_009848.1 sporulation protein YdcC 480021 ydcC 5619663 ydcC Bacillus pumilus SAFR-032 sporulation protein YdcC YP_001485691.1 479014 D 315750 CDS YP_001485692.1 157691230 5619664 480363..481541 1 NC_009848.1 dal; alanine racemase 481541 alr 5619664 alr Bacillus pumilus SAFR-032 alanine racemase YP_001485692.1 480363 D 315750 CDS YP_001485693.1 157691231 5619665 481838..482119 1 NC_009848.1 possible transcriptional regulator; hypothetical protein 482119 ydcD 5619665 ydcD Bacillus pumilus SAFR-032 hypothetical protein YP_001485693.1 481838 D 315750 CDS YP_001485694.1 157691232 5619666 482124..482474 1 NC_009848.1 PemK family growth inhibitor 482474 ydcE 5619666 ydcE Bacillus pumilus SAFR-032 PemK family growth inhibitor YP_001485694.1 482124 D 315750 CDS YP_001485695.1 157691233 5619667 482589..483419 1 NC_009848.1 anti-sigma factor antagonist YcxR; anti-anti-sigma-B regulator 483419 rsbR 5619667 rsbR Bacillus pumilus SAFR-032 anti-anti-sigma-B regulator YP_001485695.1 482589 D 315750 CDS YP_001485696.1 157691234 5619668 483424..483792 1 NC_009848.1 RsbT antagonist 483792 rsbS 5619668 rsbS Bacillus pumilus SAFR-032 RsbT antagonist YP_001485696.1 483424 D 315750 CDS YP_001485697.1 157691235 5619669 483795..484196 1 NC_009848.1 switch protein, anti-sigma-B factor; non-specific serine/threonine protein kinase 484196 rsbT 5619669 rsbT Bacillus pumilus SAFR-032 non-specific serine/threonine protein kinase YP_001485697.1 483795 D 315750 CDS YP_001485698.1 157691236 5619670 484207..485214 1 NC_009848.1 sigma factor SigB regulation protein; phosphoserine phosphatase 485214 rsbU 5619670 rsbU Bacillus pumilus SAFR-032 phosphoserine phosphatase YP_001485698.1 484207 D 315750 CDS YP_001485699.1 157691237 5619671 485274..485603 1 NC_009848.1 anti-sigma-B factor antagonist; anti-anti-sigma factor (RsbW antagonist) 485603 rsbV 5619671 rsbV Bacillus pumilus SAFR-032 anti-anti-sigma factor (RsbW antagonist) YP_001485699.1 485274 D 315750 CDS YP_001485700.1 157691238 5619672 485600..486088 1 NC_009848.1 binds to sigma-B preventing the formation of an RNA polymerase holoenzyme; serine-protein kinase RsbW 486088 rsbW 5619672 rsbW Bacillus pumilus SAFR-032 serine-protein kinase RsbW YP_001485700.1 485600 D 315750 CDS YP_001485701.1 157691239 5619673 486054..486842 1 NC_009848.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase; RNA polymerase sigma factor SigB 486842 sigB 5619673 sigB Bacillus pumilus SAFR-032 RNA polymerase sigma factor SigB YP_001485701.1 486054 D 315750 CDS YP_001485702.1 157691240 5619674 486842..487441 1 NC_009848.1 sigma B-dependent serine phosphatase; phosphoserine phosphatase 487441 rsbX 5619674 rsbX Bacillus pumilus SAFR-032 phosphoserine phosphatase YP_001485702.1 486842 D 315750 CDS YP_001485703.1 157691241 5619675 487518..489677 1 NC_009848.1 RNA binding transcriptional accessory protein 489677 ydcI 5619675 ydcI Bacillus pumilus SAFR-032 RNA binding transcriptional accessory protein YP_001485703.1 487518 D 315750 CDS YP_001485704.1 157691242 5619676 complement(489698..489832) 1 NC_009848.1 hypothetical protein 489832 5619676 BPUM_0449 Bacillus pumilus SAFR-032 hypothetical protein YP_001485704.1 489698 R 315750 CDS YP_001485705.1 157691243 5619677 489932..490405 1 NC_009848.1 hypothetical protein 490405 ydcK 5619677 ydcK Bacillus pumilus SAFR-032 hypothetical protein YP_001485705.1 489932 D 315750 CDS YP_001485706.1 157691244 5619678 490599..491576 1 NC_009848.1 acetoin dehydrogenase E1 alpha subunit; dihydrolipoyl dehydrogenase E1 alpha subunit 491576 acoA 5619678 acoA Bacillus pumilus SAFR-032 dihydrolipoyl dehydrogenase E1 alpha subunit YP_001485706.1 490599 D 315750 CDS YP_001485707.1 157691245 5619679 491597..492634 1 NC_009848.1 acetoin dehydrogenase E1 beta subunit; dihydrolipoyl dehydrogenase E1 beta subunit 492634 acoB 5619679 acoB Bacillus pumilus SAFR-032 dihydrolipoyl dehydrogenase E1 beta subunit YP_001485707.1 491597 D 315750 CDS YP_001485708.1 157691246 5619680 492652..493791 1 NC_009848.1 acetoin dehydrogenase E2 subunit; branched-chain alpha-keto acid dehydrogenase subunit E2 493791 acoC 5619680 acoC Bacillus pumilus SAFR-032 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_001485708.1 492652 D 315750 CDS YP_001485709.1 157691247 5619681 493810..495189 1 NC_009848.1 E3 component of acetoin cleaving system; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 495189 acoL 5619681 acoL Bacillus pumilus SAFR-032 dihydrolipoamide dehydrogenase YP_001485709.1 493810 D 315750 CDS YP_001485710.1 157691248 5619682 495298..497145 1 NC_009848.1 transcriptional regulator 497145 acoR 5619682 acoR Bacillus pumilus SAFR-032 transcriptional regulator YP_001485710.1 495298 D 315750 CDS YP_001485711.1 157691249 5619690 498006..498167 1 NC_009848.1 hypothetical protein 498167 5619690 BPUM_0456 Bacillus pumilus SAFR-032 hypothetical protein YP_001485711.1 498006 D 315750 CDS YP_001485712.1 157691250 5619691 498191..498985 1 NC_009848.1 S33 family serine peptidase; alpha/beta fold family hydrolase 498985 5619691 BPUM_0457 Bacillus pumilus SAFR-032 alpha/beta fold family hydrolase YP_001485712.1 498191 D 315750 CDS YP_001485713.1 157691251 5619692 499198..499704 1 NC_009848.1 hypothetical protein 499704 grpB 5619692 grpB Bacillus pumilus SAFR-032 hypothetical protein YP_001485713.1 499198 D 315750 CDS YP_001485714.1 157691252 5619693 499990..500193 1 NC_009848.1 cold-shock protein 500193 cspC 5619693 cspC Bacillus pumilus SAFR-032 cold-shock protein YP_001485714.1 499990 D 315750 CDS YP_001485715.1 157691253 5619694 complement(500484..500945) 1 NC_009848.1 transcription regulator CarD 500945 ydeB 5619694 ydeB Bacillus pumilus SAFR-032 transcription regulator CarD YP_001485715.1 500484 R 315750 CDS YP_001485716.1 157691254 5619695 complement(501186..502235) 1 NC_009848.1 NADP-dependent alcohol dehydrogenase 502235 adhA 5619695 adhA Bacillus pumilus SAFR-032 NADP-dependent alcohol dehydrogenase YP_001485716.1 501186 R 315750 CDS YP_001485717.1 157691255 5619696 502459..502860 1 NC_009848.1 MerR family transcriptional regulator 502860 yraB 5619696 yraB Bacillus pumilus SAFR-032 MerR family transcriptional regulator YP_001485717.1 502459 D 315750 CDS YP_001485718.1 157691256 5619697 complement(502903..503634) 1 NC_009848.1 licheninase 503634 bglS 5619697 bglS Bacillus pumilus SAFR-032 licheninase YP_001485718.1 502903 R 315750 CDS YP_001485719.1 157691257 5619698 503940..504518 1 NC_009848.1 TetR family transcriptional regulator 504518 5619698 BPUM_0464 Bacillus pumilus SAFR-032 TetR family transcriptional regulator YP_001485719.1 503940 D 315750 CDS YP_001485720.1 157691258 5619699 504591..506030 1 NC_009848.1 lincomycin resistance protein; major facilitator superfamily transporter 506030 lmrB 5619699 lmrB Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001485720.1 504591 D 315750 CDS YP_001485721.1 157691259 5619700 506225..507118 1 NC_009848.1 S9C family serine non-peptidase homolog; carboxylesterase A 507118 5619700 BPUM_0466 Bacillus pumilus SAFR-032 carboxylesterase A YP_001485721.1 506225 D 315750 CDS YP_001485722.1 157691260 5619701 507260..507625 1 NC_009848.1 hypothetical protein 507625 5619701 BPUM_0467 Bacillus pumilus SAFR-032 hypothetical protein YP_001485722.1 507260 D 315750 CDS YP_001485723.1 157691261 5619702 507730..508491 1 NC_009848.1 short-chain dehydrogenase/reductase SDR 508491 dltE 5619702 dltE Bacillus pumilus SAFR-032 short-chain dehydrogenase/reductase SDR YP_001485723.1 507730 D 315750 CDS YP_001485724.1 157691262 5619703 complement(508641..509009) 1 NC_009848.1 hypothetical protein 509009 5619703 BPUM_0469 Bacillus pumilus SAFR-032 hypothetical protein YP_001485724.1 508641 R 315750 CDS YP_001485725.1 157691263 5619704 509287..510435 1 NC_009848.1 asparaginase 510435 yccC 5619704 yccC Bacillus pumilus SAFR-032 asparaginase YP_001485725.1 509287 D 315750 CDS YP_001485726.1 157691264 5619705 complement(510469..511368) 1 NC_009848.1 peptidase 511368 5619705 BPUM_0471 Bacillus pumilus SAFR-032 peptidase YP_001485726.1 510469 R 315750 CDS YP_001485727.1 157691265 5619706 complement(511425..511871) 1 NC_009848.1 MarR family transcriptional regulator 511871 5619706 BPUM_0472 Bacillus pumilus SAFR-032 MarR family transcriptional regulator YP_001485727.1 511425 R 315750 CDS YP_001485728.1 157691266 5619707 511957..512106 1 NC_009848.1 hypothetical protein 512106 5619707 BPUM_0473 Bacillus pumilus SAFR-032 hypothetical protein YP_001485728.1 511957 D 315750 CDS YP_001485729.1 157691267 5619708 512081..512686 1 NC_009848.1 TetR family transcriptional regulator 512686 5619708 BPUM_0474 Bacillus pumilus SAFR-032 TetR family transcriptional regulator YP_001485729.1 512081 D 315750 CDS YP_001485730.1 157691268 5619709 512718..513914 1 NC_009848.1 multidrug-efflux transporter AcfA Bmr2 Bmt; major facilitator superfamily transporter 513914 blt 5619709 blt Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001485730.1 512718 D 315750 CDS YP_001485731.1 157691269 5619710 complement(514149..514565) 1 NC_009848.1 hypothetical protein 514565 5619710 BPUM_0476 Bacillus pumilus SAFR-032 hypothetical protein YP_001485731.1 514149 R 315750 CDS YP_001485732.1 157691270 5619711 complement(514562..515002) 1 NC_009848.1 hypothetical protein 515002 5619711 BPUM_0477 Bacillus pumilus SAFR-032 hypothetical protein YP_001485732.1 514562 R 315750 CDS YP_001485733.1 157691271 5619712 515144..515950 1 NC_009848.1 hypothetical protein 515950 ydfB 5619712 ydfB Bacillus pumilus SAFR-032 hypothetical protein YP_001485733.1 515144 D 315750 CDS YP_001485734.1 157691272 5619713 complement(515945..516415) 1 NC_009848.1 GNAT family acetyltransferase 516415 5619713 BPUM_0479 Bacillus pumilus SAFR-032 GNAT family acetyltransferase YP_001485734.1 515945 R 315750 CDS YP_001485735.1 157691273 5619714 516468..516737 1 NC_009848.1 hypothetical protein 516737 5619714 BPUM_0480 Bacillus pumilus SAFR-032 hypothetical protein YP_001485735.1 516468 D 315750 CDS YP_001485736.1 157691274 5619715 complement(516734..517273) 1 NC_009848.1 acetyltransferase 517273 5619715 BPUM_0481 Bacillus pumilus SAFR-032 acetyltransferase YP_001485736.1 516734 R 315750 CDS YP_001485737.1 157691275 5619716 complement(517270..517665) 1 NC_009848.1 dioxygenase 517665 5619716 BPUM_0482 Bacillus pumilus SAFR-032 dioxygenase YP_001485737.1 517270 R 315750 CDS YP_001485738.1 157691276 5619717 complement(517734..518357) 1 NC_009848.1 histone acetyltransferase HPA2 and related acetyltransferases; histone acetyltransferase HPA2-like protein 518357 5619717 BPUM_0483 Bacillus pumilus SAFR-032 histone acetyltransferase HPA2-like protein YP_001485738.1 517734 R 315750 CDS YP_001485739.1 157691277 5619718 518507..519058 1 NC_009848.1 transcriptional regulator 519058 5619718 BPUM_0484 Bacillus pumilus SAFR-032 transcriptional regulator YP_001485739.1 518507 D 315750 CDS YP_001485740.1 157691278 5619719 519148..519690 1 NC_009848.1 dihydrofolate reductase family protein 519690 5619719 BPUM_0485 Bacillus pumilus SAFR-032 dihydrofolate reductase family protein YP_001485740.1 519148 D 315750 CDS YP_001485741.1 157691279 5619720 519799..520272 1 NC_009848.1 transcriptional regulator 520272 5619720 BPUM_0486 Bacillus pumilus SAFR-032 transcriptional regulator YP_001485741.1 519799 D 315750 CDS YP_001485742.1 157691280 5619721 520223..520879 1 NC_009848.1 nitroreductase family protein 520879 5619721 BPUM_0487 Bacillus pumilus SAFR-032 nitroreductase family protein YP_001485742.1 520223 D 315750 CDS YP_001485743.1 157691281 5619722 520897..521949 1 NC_009848.1 hypothetical protein 521949 5619722 BPUM_0488 Bacillus pumilus SAFR-032 hypothetical protein YP_001485743.1 520897 D 315750 CDS YP_001485744.1 157691282 5619723 complement(521997..522203) 1 NC_009848.1 hypothetical protein 522203 5619723 BPUM_0489 Bacillus pumilus SAFR-032 hypothetical protein YP_001485744.1 521997 R 315750 CDS YP_001485745.1 157691283 5619724 522253..522591 1 NC_009848.1 hypothetical protein 522591 5619724 BPUM_0490 Bacillus pumilus SAFR-032 hypothetical protein YP_001485745.1 522253 D 315750 CDS YP_001485746.1 157691284 5619725 complement(522633..523187) 1 NC_009848.1 transcriptional regulator 523187 5619725 BPUM_0491 Bacillus pumilus SAFR-032 transcriptional regulator YP_001485746.1 522633 R 315750 CDS YP_001485747.1 157691285 5619726 523299..523886 1 NC_009848.1 homoserine/threonine resistance transporter 523886 5619726 BPUM_0492 Bacillus pumilus SAFR-032 homoserine/threonine resistance transporter YP_001485747.1 523299 D 315750 CDS YP_001485748.1 157691286 5619727 complement(523891..524442) 1 NC_009848.1 acetyltransferase 524442 5619727 BPUM_0493 Bacillus pumilus SAFR-032 acetyltransferase YP_001485748.1 523891 R 315750 CDS YP_001485749.1 157691287 5619728 complement(524565..525554) 1 NC_009848.1 LysR family transcriptional regulator 525554 5619728 BPUM_0494 Bacillus pumilus SAFR-032 LysR family transcriptional regulator YP_001485749.1 524565 R 315750 CDS YP_001485750.1 157691288 5619729 525608..526396 1 NC_009848.1 aldo/keto dehydrogenase 526396 5619729 BPUM_0495 Bacillus pumilus SAFR-032 aldo/keto dehydrogenase YP_001485750.1 525608 D 315750 CDS YP_001485751.1 157691289 5619730 526559..526744 1 NC_009848.1 hypothetical protein 526744 5619730 BPUM_0496 Bacillus pumilus SAFR-032 hypothetical protein YP_001485751.1 526559 D 315750 CDS YP_001485752.1 157691290 5619731 526893..527555 1 NC_009848.1 O-methyltransferase 527555 5619731 BPUM_0497 Bacillus pumilus SAFR-032 O-methyltransferase YP_001485752.1 526893 D 315750 CDS YP_001485753.1 157691291 5619732 complement(527592..527912) 1 NC_009848.1 hypothetical protein 527912 5619732 BPUM_0498 Bacillus pumilus SAFR-032 hypothetical protein YP_001485753.1 527592 R 315750 CDS YP_001485754.1 157691292 5619733 complement(527909..528634) 1 NC_009848.1 LIV-E family branched chain amino acid exporter 528634 azlC 5619733 azlC Bacillus pumilus SAFR-032 LIV-E family branched chain amino acid exporter YP_001485754.1 527909 R 315750 CDS YP_001485755.1 157691293 5619734 528929..529804 1 NC_009848.1 DMT family permease 529804 5619734 BPUM_0500 Bacillus pumilus SAFR-032 DMT family permease YP_001485755.1 528929 D 315750 CDS YP_001485756.1 157691294 5619735 complement(530048..531298) 1 NC_009848.1 DAACS family dicarboxylate/amino acid:cation symporter 531298 5619735 BPUM_0501 Bacillus pumilus SAFR-032 DAACS family dicarboxylate/amino acid:cation symporter YP_001485756.1 530048 R 315750 CDS YP_001485757.1 157691295 5619736 531363..531533 1 NC_009848.1 hypothetical protein 531533 5619736 BPUM_0502 Bacillus pumilus SAFR-032 hypothetical protein YP_001485757.1 531363 D 315750 CDS YP_001485758.1 157691296 5619744 complement(537040..538008) 1 NC_009848.1 hypothetical protein 538008 yaaC 5619744 yaaC Bacillus pumilus SAFR-032 hypothetical protein YP_001485758.1 537040 R 315750 CDS YP_001485759.1 157691297 5619745 538130..539596 1 NC_009848.1 catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 539596 guaB 5619745 guaB Bacillus pumilus SAFR-032 inosine 5'-monophosphate dehydrogenase YP_001485759.1 538130 D 315750 CDS YP_001485760.1 157691298 5619746 539757..541082 1 NC_009848.1 penicillin-binding protein 5; serine-type D-Ala-D-Ala carboxypeptidase 541082 dacA 5619746 dacA Bacillus pumilus SAFR-032 serine-type D-Ala-D-Ala carboxypeptidase YP_001485760.1 539757 D 315750 CDS YP_001485761.1 157691299 5619747 complement(541123..542601) 1 NC_009848.1 GntR family transcriptional regulator 542601 5619747 BPUM_0506 Bacillus pumilus SAFR-032 GntR family transcriptional regulator YP_001485761.1 541123 R 315750 CDS YP_001485762.1 157691300 5619748 542847..543731 1 NC_009848.1 with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 543731 yaaD 5619748 yaaD Bacillus pumilus SAFR-032 pyridoxal biosynthesis lyase PdxS YP_001485762.1 542847 D 315750 CDS YP_001485763.1 157691301 5619749 543752..544342 1 NC_009848.1 with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT 544342 yaaE 5619749 yaaE Bacillus pumilus SAFR-032 glutamine amidotransferase subunit PdxT YP_001485763.1 543752 D 315750 CDS YP_001485764.1 157691302 5619750 544662..545936 1 NC_009848.1 catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 545936 serS 5619750 serS Bacillus pumilus SAFR-032 seryl-tRNA synthetase YP_001485764.1 544662 D 315750 CDS YP_001485765.1 157691303 5619751 546039..546869 1 NC_009848.1 chemotaxis sensory transducer protein 546869 5619751 BPUM_0510 Bacillus pumilus SAFR-032 chemotaxis sensory transducer protein YP_001485765.1 546039 D 315750 CDS YP_001485766.1 157691304 5619753 complement(547179..547838) 1 NC_009848.1 deoxynucleoside kinase 547838 dck 5619753 dck Bacillus pumilus SAFR-032 deoxynucleoside kinase YP_001485766.1 547179 R 315750 CDS YP_001485767.1 157691305 5619754 complement(547835..548458) 1 NC_009848.1 yaaG; deoxyguanosine kinase 548458 dgk 5619754 dgk Bacillus pumilus SAFR-032 deoxyguanosine kinase YP_001485767.1 547835 R 315750 CDS YP_001485768.1 157691306 5619755 complement(548538..549839) 1 NC_009848.1 spore cortex-lytic enzyme, L-alanine-stimulated germination protein YaaH; spore germination protein 549839 yaaH 5619755 yaaH Bacillus pumilus SAFR-032 spore germination protein YP_001485768.1 548538 R 315750 CDS YP_001485769.1 157691307 5619756 complement(549885..550439) 1 NC_009848.1 cysteine hydrolase family protein 550439 yaaI 5619756 yaaI Bacillus pumilus SAFR-032 cysteine hydrolase family protein YP_001485769.1 549885 R 315750 CDS YP_001485770.1 157691308 5619757 550519..550995 1 NC_009848.1 possible cytidine/deoxycytidylate deaminase; nucleoside deaminase 550995 yaaJ 5619757 yaaJ Bacillus pumilus SAFR-032 nucleoside deaminase YP_001485770.1 550519 D 315750 CDS YP_001485771.1 157691309 5619759 551666..553378 1 NC_009848.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 553378 dnaX 5619759 dnaX Bacillus pumilus SAFR-032 DNA polymerase III subunits gamma and tau YP_001485771.1 551666 D 315750 CDS YP_001485772.1 157691310 5619760 553384..553728 1 NC_009848.1 hypothetical protein 553728 yaaK 5619760 yaaK Bacillus pumilus SAFR-032 hypothetical protein YP_001485772.1 553384 D 315750 CDS YP_001485773.1 157691311 5619761 553744..554340 1 NC_009848.1 involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 554340 recR 5619761 recR Bacillus pumilus SAFR-032 recombination protein RecR YP_001485773.1 553744 D 315750 CDS YP_001485774.1 157691312 5619762 554359..554583 1 NC_009848.1 hypothetical protein 554583 yaaL 5619762 yaaL Bacillus pumilus SAFR-032 hypothetical protein YP_001485774.1 554359 D 315750 CDS YP_001485775.1 157691313 5619763 554650..554913 1 NC_009848.1 sigma-K factor-processing regulatory protein BofA 554913 bofA 5619763 bofA Bacillus pumilus SAFR-032 sigma-K factor-processing regulatory protein BofA YP_001485775.1 554650 D 315750 CDS YP_001485776.1 157691314 5619769 560530..561507 1 NC_009848.1 catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 561507 thiL 5619769 thiL Bacillus pumilus SAFR-032 thiamine monophosphate kinase YP_001485776.1 560530 D 315750 CDS YP_001485777.1 157691315 5619770 561530..561997 1 NC_009848.1 ATP-binding protein 561997 ydiB 5619770 ydiB Bacillus pumilus SAFR-032 ATP-binding protein YP_001485777.1 561530 D 315750 CDS YP_001485778.1 157691316 5619771 561978..562667 1 NC_009848.1 M22 family peptidase 562667 ydiC 5619771 ydiC Bacillus pumilus SAFR-032 M22 family peptidase YP_001485778.1 561978 D 315750 CDS YP_001485779.1 157691317 5619772 562651..563121 1 NC_009848.1 YdiD; ribosomal-protein-alanine N-acetyltransferase 563121 rimI 5619772 rimI Bacillus pumilus SAFR-032 ribosomal-protein-alanine N-acetyltransferase YP_001485779.1 562651 D 315750 CDS YP_001485780.1 157691318 5619773 563114..564142 1 NC_009848.1 in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 564142 gcp 5619773 gcp Bacillus pumilus SAFR-032 putative DNA-binding/iron metalloprotein/AP endonuclease YP_001485780.1 563114 D 315750 CDS YP_001485781.1 157691319 5619774 complement(564414..566336) 1 NC_009848.1 ABC transporter ATP-binding protein 566336 ydiF 5619774 ydiF Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001485781.1 564414 R 315750 CDS YP_001485782.1 157691320 5619775 566476..566967 1 NC_009848.1 MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 566967 moaC 5619775 moaC Bacillus pumilus SAFR-032 molybdenum cofactor biosynthesis protein MoaC YP_001485782.1 566476 D 315750 CDS YP_001485783.1 157691321 5619776 566983..567636 1 NC_009848.1 modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 567636 rex 5619776 rex Bacillus pumilus SAFR-032 redox-sensing transcriptional repressor Rex YP_001485783.1 566983 D 315750 CDS YP_001485784.1 157691322 5619777 567664..567843 1 NC_009848.1 TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 567843 tatA 5619777 tatA Bacillus pumilus SAFR-032 twin arginine translocase protein A YP_001485784.1 567664 D 315750 CDS YP_001485785.1 157691323 5619778 567850..568614 1 NC_009848.1 TAT family twin arginine targeting transporter 568614 tatCY 5619778 tatCY Bacillus pumilus SAFR-032 TAT family twin arginine targeting transporter YP_001485785.1 567850 D 315750 CDS YP_001485786.1 157691324 5619779 complement(568653..569279) 1 NC_009848.1 hydrolase 569279 5619779 BPUM_0531 Bacillus pumilus SAFR-032 hydrolase YP_001485786.1 568653 R 315750 CDS YP_001485787.1 157691325 5619780 complement(569336..569530) 1 NC_009848.1 hypothetical protein 569530 ydiK 5619780 ydiK Bacillus pumilus SAFR-032 hypothetical protein YP_001485787.1 569336 R 315750 CDS YP_001485788.1 157691326 5619781 complement(569527..570261) 1 NC_009848.1 hypothetical protein 570261 ydiL 5619781 ydiL Bacillus pumilus SAFR-032 hypothetical protein YP_001485788.1 569527 R 315750 CDS YP_001485789.1 157691327 5619782 570492..570776 1 NC_009848.1 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 570776 groES 5619782 groES Bacillus pumilus SAFR-032 co-chaperonin GroES YP_001485789.1 570492 D 315750 CDS YP_001485790.1 157691328 5619783 570832..572466 1 NC_009848.1 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 572466 groEL 5619783 groEL Bacillus pumilus SAFR-032 chaperonin GroEL YP_001485790.1 570832 D 315750 CDS YP_001485791.1 157691329 5619785 complement(573469..573936) 1 NC_009848.1 hypothetical protein 573936 5619785 BPUM_0537 Bacillus pumilus SAFR-032 hypothetical protein YP_001485791.1 573469 R 315750 CDS YP_001485792.1 157691330 5619786 complement(574061..574735) 1 NC_009848.1 hypothetical protein 574735 5619786 BPUM_0538 Bacillus pumilus SAFR-032 hypothetical protein YP_001485792.1 574061 R 315750 CDS YP_001485793.1 157691331 5619787 574946..575314 1 NC_009848.1 hypothetical protein 575314 ydjM 5619787 ydjM Bacillus pumilus SAFR-032 hypothetical protein YP_001485793.1 574946 D 315750 CDS YP_001485794.1 157691332 5619788 575388..576437 1 NC_009848.1 hypothetical protein 576437 ydjN 5619788 ydjN Bacillus pumilus SAFR-032 hypothetical protein YP_001485794.1 575388 D 315750 CDS YP_001485795.1 157691333 5619789 complement(576653..577027) 1 NC_009848.1 4-carboxymuconolactone decarboxylase 577027 5619789 BPUM_0541 Bacillus pumilus SAFR-032 4-carboxymuconolactone decarboxylase YP_001485795.1 576653 R 315750 CDS YP_001485796.1 157691334 5619790 complement(577315..578844) 1 NC_009848.1 Pig; outer spore coat protein A 578844 cotA 5619790 cotA Bacillus pumilus SAFR-032 outer spore coat protein A YP_001485796.1 577315 R 315750 CDS YP_001485797.1 157691335 5619791 complement(578944..580350) 1 NC_009848.1 gamma-aminobutyrate (GABA) permease; APC family amino acid-polyamine-organocation transporter 580350 gabP 5619791 gabP Bacillus pumilus SAFR-032 APC family amino acid-polyamine-organocation transporter YP_001485797.1 578944 R 315750 CDS YP_001485798.1 157691336 5619792 580815..581714 1 NC_009848.1 cation efflux protein; hypothetical protein 581714 yeaB 5619792 yeaB Bacillus pumilus SAFR-032 hypothetical protein YP_001485798.1 580815 D 315750 CDS YP_001485799.1 157691337 5619793 581816..582778 1 NC_009848.1 methanol dehydrogenase regulatory protein 582778 yeaC 5619793 yeaC Bacillus pumilus SAFR-032 methanol dehydrogenase regulatory protein YP_001485799.1 581816 D 315750 CDS YP_001485800.1 157691338 5619794 582775..583965 1 NC_009848.1 hypothetical protein 583965 yeaD 5619794 yeaD Bacillus pumilus SAFR-032 hypothetical protein YP_001485800.1 582775 D 315750 CDS YP_001485801.1 157691339 5619795 583975..586179 1 NC_009848.1 possible transglutaminase, cysteine protease YebA; hypothetical protein 586179 yebA 5619795 yebA Bacillus pumilus SAFR-032 hypothetical protein YP_001485801.1 583975 D 315750 CDS YP_001485802.1 157691340 5619796 586366..587907 1 NC_009848.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 587907 guaA 5619796 guaA Bacillus pumilus SAFR-032 GMP synthase YP_001485802.1 586366 D 315750 CDS YP_001485803.1 157691341 5619797 588295..589413 1 NC_009848.1 spore transcriptional regulator YopK 589413 yopK 5619797 yopK Bacillus pumilus SAFR-032 spore transcriptional regulator YopK YP_001485803.1 588295 D 315750 CDS YP_001485804.1 157691342 5619798 complement(589733..590119) 1 NC_009848.1 transcriptional regulator 590119 5619798 BPUM_0550 Bacillus pumilus SAFR-032 transcriptional regulator YP_001485804.1 589733 R 315750 CDS YP_001485805.1 157691343 5619800 590560..590802 1 NC_009848.1 hypothetical protein 590802 5619800 BPUM_0552 Bacillus pumilus SAFR-032 hypothetical protein YP_001485805.1 590560 D 315750 CDS YP_001485806.1 157691344 5619801 592152..593117 1 NC_009848.1 hypothetical protein 593117 5619801 BPUM_0553 Bacillus pumilus SAFR-032 hypothetical protein YP_001485806.1 592152 D 315750 CDS YP_001485807.1 157691345 5619802 593151..594485 1 NC_009848.1 FtsK/SpoIIIE family protein 594485 ydcQ 5619802 ydcQ Bacillus pumilus SAFR-032 FtsK/SpoIIIE family protein YP_001485807.1 593151 D 315750 CDS YP_001485808.1 157691346 5619803 594559..595659 1 NC_009848.1 transcriptional regulator 595659 ydcR 5619803 ydcR Bacillus pumilus SAFR-032 transcriptional regulator YP_001485808.1 594559 D 315750 CDS YP_001485809.1 157691347 5619804 595915..596172 1 NC_009848.1 hypothetical protein 596172 5619804 BPUM_0556 Bacillus pumilus SAFR-032 hypothetical protein YP_001485809.1 595915 D 315750 CDS YP_001485810.1 157691348 5619805 596179..596457 1 NC_009848.1 hypothetical protein 596457 yddA 5619805 yddA Bacillus pumilus SAFR-032 hypothetical protein YP_001485810.1 596179 D 315750 CDS YP_001485811.1 157691349 5619806 596536..597186 1 NC_009848.1 hypothetical protein 597186 5619806 BPUM_0558 Bacillus pumilus SAFR-032 hypothetical protein YP_001485811.1 596536 D 315750 CDS YP_001485812.1 157691350 5619807 597247..599790 1 NC_009848.1 hypothetical protein 599790 5619807 BPUM_0559 Bacillus pumilus SAFR-032 hypothetical protein YP_001485812.1 597247 D 315750 CDS YP_001485813.1 157691351 5619808 complement(600179..601003) 1 NC_009848.1 hypothetical protein 601003 5619808 BPUM_0560 Bacillus pumilus SAFR-032 hypothetical protein YP_001485813.1 600179 R 315750 CDS YP_001485814.1 157691352 5619809 601232..602017 1 NC_009848.1 DNA (cytosine-5-)-methyltransferase 602017 ydiP 5619809 ydiP Bacillus pumilus SAFR-032 DNA (cytosine-5-)-methyltransferase YP_001485814.1 601232 D 315750 CDS YP_001485815.1 157691353 5619810 602089..602385 1 NC_009848.1 hypothetical protein 602385 5619810 BPUM_0562 Bacillus pumilus SAFR-032 hypothetical protein YP_001485815.1 602089 D 315750 CDS YP_001485816.1 157691354 5619811 602375..602656 1 NC_009848.1 hypothetical protein 602656 5619811 BPUM_0563 Bacillus pumilus SAFR-032 hypothetical protein YP_001485816.1 602375 D 315750 CDS YP_001485817.1 157691355 5619812 602685..603077 1 NC_009848.1 hypothetical protein 603077 5619812 BPUM_0564 Bacillus pumilus SAFR-032 hypothetical protein YP_001485817.1 602685 D 315750 CDS YP_001485818.1 157691356 5619813 603074..604303 1 NC_009848.1 type II/IV secretion system protein 604303 5619813 BPUM_0565 Bacillus pumilus SAFR-032 type II/IV secretion system protein YP_001485818.1 603074 D 315750 CDS YP_001485819.1 157691357 5619814 604290..605102 1 NC_009848.1 hypothetical protein 605102 5619814 BPUM_0566 Bacillus pumilus SAFR-032 hypothetical protein YP_001485819.1 604290 D 315750 CDS YP_001485820.1 157691358 5619815 605107..605868 1 NC_009848.1 hypothetical protein 605868 5619815 BPUM_0567 Bacillus pumilus SAFR-032 hypothetical protein YP_001485820.1 605107 D 315750 CDS YP_001485821.1 157691359 5619816 605875..606234 1 NC_009848.1 hypothetical protein 606234 5619816 BPUM_0568 Bacillus pumilus SAFR-032 hypothetical protein YP_001485821.1 605875 D 315750 CDS YP_001485822.1 157691360 5619817 606407..606574 1 NC_009848.1 hypothetical protein 606574 5619817 BPUM_0569 Bacillus pumilus SAFR-032 hypothetical protein YP_001485822.1 606407 D 315750 CDS YP_001485823.1 157691361 5619818 606833..607081 1 NC_009848.1 hypothetical protein 607081 5619818 BPUM_0570 Bacillus pumilus SAFR-032 hypothetical protein YP_001485823.1 606833 D 315750 CDS YP_001485824.1 157691362 5619819 607062..608057 1 NC_009848.1 hypothetical protein 608057 yddB 5619819 yddB Bacillus pumilus SAFR-032 hypothetical protein YP_001485824.1 607062 D 315750 CDS YP_001485825.1 157691363 5619820 608069..608329 1 NC_009848.1 hypothetical protein 608329 yddC 5619820 yddC Bacillus pumilus SAFR-032 hypothetical protein YP_001485825.1 608069 D 315750 CDS YP_001485826.1 157691364 5619821 608341..608808 1 NC_009848.1 hypothetical protein 608808 yddD 5619821 yddD Bacillus pumilus SAFR-032 hypothetical protein YP_001485826.1 608341 D 315750 CDS YP_001485827.1 157691365 5619822 608786..611242 1 NC_009848.1 hypothetical protein 611242 yddE 5619822 yddE Bacillus pumilus SAFR-032 hypothetical protein YP_001485827.1 608786 D 315750 CDS YP_001485828.1 157691366 5619823 612013..614394 1 NC_009848.1 hypothetical protein 614394 yddG 5619823 yddG Bacillus pumilus SAFR-032 hypothetical protein YP_001485828.1 612013 D 315750 CDS YP_001485829.1 157691367 5619824 614391..615368 1 NC_009848.1 possible C40 family dipeptidyl peptidase VI; C40 family peptidase 615368 yddH 5619824 yddH Bacillus pumilus SAFR-032 C40 family peptidase YP_001485829.1 614391 D 315750 CDS YP_001485830.1 157691368 5619825 615378..615869 1 NC_009848.1 hypothetical protein 615869 yddI 5619825 yddI Bacillus pumilus SAFR-032 hypothetical protein YP_001485830.1 615378 D 315750 CDS YP_001485831.1 157691369 5619826 615897..616106 1 NC_009848.1 hypothetical protein 616106 5619826 BPUM_0578 Bacillus pumilus SAFR-032 hypothetical protein YP_001485831.1 615897 D 315750 CDS YP_001485832.1 157691370 5619828 616312..617589 1 NC_009848.1 YdcL; integrase 617589 int 5619828 int Bacillus pumilus SAFR-032 integrase YP_001485832.1 616312 D 315750 CDS YP_001485833.1 157691371 5619829 complement(617863..618921) 1 NC_009848.1 AraC family transcription regulator 618921 5619829 BPUM_0581 Bacillus pumilus SAFR-032 AraC family transcription regulator YP_001485833.1 617863 R 315750 CDS YP_001485834.1 157691372 5619830 complement(618922..620583) 1 NC_009848.1 2-isopropylmalate synthase 620583 5619830 BPUM_0582 Bacillus pumilus SAFR-032 2-isopropylmalate synthase YP_001485834.1 618922 R 315750 CDS YP_001485835.1 157691373 5619831 complement(621147..622034) 1 NC_009848.1 AraC family transcription regulator 622034 ybfP 5619831 ybfP Bacillus pumilus SAFR-032 AraC family transcription regulator YP_001485835.1 621147 R 315750 CDS YP_001485836.1 157691374 5619832 622244..623116 1 NC_009848.1 transcriptional regulator 623116 ydeE 5619832 ydeE Bacillus pumilus SAFR-032 transcriptional regulator YP_001485836.1 622244 D 315750 CDS YP_001485837.1 157691375 5619833 623130..623705 1 NC_009848.1 acetyltransferase 623705 5619833 BPUM_0585 Bacillus pumilus SAFR-032 acetyltransferase YP_001485837.1 623130 D 315750 CDS YP_001485838.1 157691376 5619834 complement(623842..624408) 1 NC_009848.1 acetyltransferase 624408 5619834 BPUM_0586 Bacillus pumilus SAFR-032 acetyltransferase YP_001485838.1 623842 R 315750 CDS YP_001485839.1 157691377 5619835 complement(624413..624598) 1 NC_009848.1 hypothetical protein 624598 5619835 BPUM_0587 Bacillus pumilus SAFR-032 hypothetical protein YP_001485839.1 624413 R 315750 CDS YP_001485840.1 157691378 5619836 624778..625323 1 NC_009848.1 ECF family DNA-directed RNA polymerase sigma factor 625323 5619836 BPUM_0588 Bacillus pumilus SAFR-032 ECF family DNA-directed RNA polymerase sigma factor YP_001485840.1 624778 D 315750 CDS YP_001485841.1 157691379 5619837 625292..626740 1 NC_009848.1 hypothetical protein 626740 5619837 BPUM_0589 Bacillus pumilus SAFR-032 hypothetical protein YP_001485841.1 625292 D 315750 CDS YP_001485842.1 157691380 5619838 complement(626759..627946) 1 NC_009848.1 major facilitator superfamily transporter 627946 5619838 BPUM_0590 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001485842.1 626759 R 315750 CDS YP_001485843.1 157691381 5619839 628047..628943 1 NC_009848.1 LysR family transcriptional regulator 628943 lysR 5619839 lysR Bacillus pumilus SAFR-032 LysR family transcriptional regulator YP_001485843.1 628047 D 315750 CDS YP_001485844.1 157691382 5619840 629305..630630 1 NC_009848.1 NCS2 family nucleobase:cation symporter-2 630630 pbuG 5619840 pbuG Bacillus pumilus SAFR-032 NCS2 family nucleobase:cation symporter-2 YP_001485844.1 629305 D 315750 CDS YP_001485845.1 157691383 5619841 631012..631812 1 NC_009848.1 hypothetical protein 631812 yebC 5619841 yebC Bacillus pumilus SAFR-032 hypothetical protein YP_001485845.1 631012 D 315750 CDS YP_001485846.1 157691384 5619842 631947..632573 1 NC_009848.1 hypothetical protein 632573 yebE 5619842 yebE Bacillus pumilus SAFR-032 hypothetical protein YP_001485846.1 631947 D 315750 CDS YP_001485847.1 157691385 5619843 632570..632770 1 NC_009848.1 hypothetical protein 632770 yebG 5619843 yebG Bacillus pumilus SAFR-032 hypothetical protein YP_001485847.1 632570 D 315750 CDS YP_001485848.1 157691386 5619844 633121..633609 1 NC_009848.1 phosphoribosylaminoimidazole carboxylase catalytic subunit 633609 purE 5619844 purE Bacillus pumilus SAFR-032 phosphoribosylaminoimidazole carboxylase catalytic subunit YP_001485848.1 633121 D 315750 CDS YP_001485849.1 157691387 5619845 633602..634744 1 NC_009848.1 With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 634744 purK 5619845 purK Bacillus pumilus SAFR-032 phosphoribosylaminoimidazole carboxylase ATPase subunit YP_001485849.1 633602 D 315750 CDS YP_001485850.1 157691388 5619846 634741..636036 1 NC_009848.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 636036 purB 5619846 purB Bacillus pumilus SAFR-032 adenylosuccinate lyase YP_001485850.1 634741 D 315750 CDS YP_001485851.1 157691389 5619847 636109..636831 1 NC_009848.1 catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 636831 purC 5619847 purC Bacillus pumilus SAFR-032 phosphoribosylaminoimidazolesuccinocarboxamide synthase YP_001485851.1 636109 D 315750 CDS YP_001485852.1 157691390 5619848 636824..637078 1 NC_009848.1 With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway; phosphoribosylformylglycinamidine synthase subunit PurS 637078 purS 5619848 purS Bacillus pumilus SAFR-032 phosphoribosylformylglycinamidine synthase subunit PurS YP_001485852.1 636824 D 315750 CDS YP_001485853.1 157691391 5619849 637075..637758 1 NC_009848.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 637758 purQ 5619849 purQ Bacillus pumilus SAFR-032 phosphoribosylformylglycinamidine synthase I YP_001485853.1 637075 D 315750 CDS YP_001485854.1 157691392 5619850 637742..639973 1 NC_009848.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 639973 purL 5619850 purL Bacillus pumilus SAFR-032 phosphoribosylformylglycinamidine synthase II YP_001485854.1 637742 D 315750 CDS YP_001485855.1 157691393 5619851 639949..641379 1 NC_009848.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 641379 purF 5619851 purF Bacillus pumilus SAFR-032 amidophosphoribosyltransferase YP_001485855.1 639949 D 315750 CDS YP_001485856.1 157691394 5619852 641475..642515 1 NC_009848.1 catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 642515 purM 5619852 purM Bacillus pumilus SAFR-032 phosphoribosylaminoimidazole synthetase YP_001485856.1 641475 D 315750 CDS YP_001485857.1 157691395 5619853 642512..643081 1 NC_009848.1 glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 643081 purN 5619853 purN Bacillus pumilus SAFR-032 phosphoribosylglycinamide formyltransferase YP_001485857.1 642512 D 315750 CDS YP_001485858.1 157691396 5619854 643097..644635 1 NC_009848.1 involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 644635 purH 5619854 purH Bacillus pumilus SAFR-032 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase YP_001485858.1 643097 D 315750 CDS YP_001485859.1 157691397 5619855 644648..645922 1 NC_009848.1 catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 645922 purD 5619855 purD Bacillus pumilus SAFR-032 phosphoribosylamine--glycine ligase YP_001485859.1 644648 D 315750 CDS YP_001485860.1 157691398 5619856 646194..649241 1 NC_009848.1 helicase 649241 5619856 BPUM_0608 Bacillus pumilus SAFR-032 helicase YP_001485860.1 646194 D 315750 CDS YP_001485861.1 157691399 5619857 649392..649586 1 NC_009848.1 hypothetical protein 649586 5619857 BPUM_0609 Bacillus pumilus SAFR-032 hypothetical protein YP_001485861.1 649392 D 315750 CDS YP_001485862.1 157691400 5619858 649608..650453 1 NC_009848.1 acetyltransferase 650453 5619858 BPUM_0610 Bacillus pumilus SAFR-032 acetyltransferase YP_001485862.1 649608 D 315750 CDS YP_001485863.1 157691401 5619859 complement(650448..652106) 1 NC_009848.1 possible purine catabolism related protein YcgP; hypothetical protein 652106 5619859 BPUM_0611 Bacillus pumilus SAFR-032 hypothetical protein YP_001485863.1 650448 R 315750 CDS YP_001485864.1 157691402 5619860 652297..653661 1 NC_009848.1 BioA; hypothetical protein 653661 yodT 5619860 yodT Bacillus pumilus SAFR-032 hypothetical protein YP_001485864.1 652297 D 315750 CDS YP_001485865.1 157691403 5619861 653674..654360 1 NC_009848.1 acetate CoA-transferase subunit alpha 654360 atoD 5619861 atoD Bacillus pumilus SAFR-032 acetate CoA-transferase subunit alpha YP_001485865.1 653674 D 315750 CDS YP_001485866.1 157691404 5619862 654336..655001 1 NC_009848.1 3-ketoacid CoA transferase; acetate CoA-transferase subunit beta 655001 yodR 5619862 yodR Bacillus pumilus SAFR-032 acetate CoA-transferase subunit beta YP_001485866.1 654336 D 315750 CDS YP_001485867.1 157691405 5619863 655016..656287 1 NC_009848.1 catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 656287 yodQ 5619863 yodQ Bacillus pumilus SAFR-032 acetylornithine deacetylase YP_001485867.1 655016 D 315750 CDS YP_001485868.1 157691406 5619864 complement(656372..656593) 1 NC_009848.1 hypothetical protein 656593 5619864 BPUM_0616 Bacillus pumilus SAFR-032 hypothetical protein YP_001485868.1 656372 R 315750 CDS YP_001485869.1 157691407 5619865 656718..658460 1 NC_009848.1 M38 family peptidase; adenine deaminase 658460 yerA 5619865 yerA Bacillus pumilus SAFR-032 adenine deaminase YP_001485869.1 656718 D 315750 CDS YP_001485870.1 157691408 5619866 complement(658728..658913) 1 NC_009848.1 hypothetical protein 658913 5619866 BPUM_0618 Bacillus pumilus SAFR-032 hypothetical protein YP_001485870.1 658728 R 315750 CDS YP_001485871.1 157691409 5619867 659010..659324 1 NC_009848.1 sporulation protein YerC 659324 yerC 5619867 yerC Bacillus pumilus SAFR-032 sporulation protein YerC YP_001485871.1 659010 D 315750 CDS YP_001485872.1 157691410 5619868 659384..659605 1 NC_009848.1 hypothetical protein 659605 5619868 BPUM_0620 Bacillus pumilus SAFR-032 hypothetical protein YP_001485872.1 659384 D 315750 CDS YP_001485873.1 157691411 5619869 complement(659623..661203) 1 NC_009848.1 glutamate synthase 661203 yerD 5619869 yerD Bacillus pumilus SAFR-032 glutamate synthase YP_001485873.1 659623 R 315750 CDS YP_001485874.1 157691412 5619870 661343..661573 1 NC_009848.1 hypothetical protein 661573 ybyB 5619870 ybyB Bacillus pumilus SAFR-032 hypothetical protein YP_001485874.1 661343 D 315750 CDS YP_001485875.1 157691413 5619871 complement(661554..661967) 1 NC_009848.1 YuzE; hypothetical protein 661967 5619871 BPUM_0623 Bacillus pumilus SAFR-032 hypothetical protein YP_001485875.1 661554 R 315750 CDS YP_001485876.1 157691414 5619872 662123..662932 1 NC_009848.1 PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer; geranylgeranylglyceryl phosphate synthase 662932 pcrB 5619872 pcrB Bacillus pumilus SAFR-032 geranylgeranylglyceryl phosphate synthase YP_001485876.1 662123 D 315750 CDS YP_001485877.1 157691415 5619873 662990..665212 1 NC_009848.1 ATP-dependent DNA helicase 665212 pcrA 5619873 pcrA Bacillus pumilus SAFR-032 ATP-dependent DNA helicase YP_001485877.1 662990 D 315750 CDS YP_001485878.1 157691416 5619874 665257..667263 1 NC_009848.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 667263 ligA 5619874 ligA Bacillus pumilus SAFR-032 NAD-dependent DNA ligase LigA YP_001485878.1 665257 D 315750 CDS YP_001485879.1 157691417 5619875 667279..668466 1 NC_009848.1 hypothetical protein 668466 yerH 5619875 yerH Bacillus pumilus SAFR-032 hypothetical protein YP_001485879.1 667279 D 315750 CDS YP_001485880.1 157691418 5619876 668567..669799 1 NC_009848.1 major facilitator superfamily macrolide:cation transporter 669799 yfmI 5619876 yfmI Bacillus pumilus SAFR-032 major facilitator superfamily macrolide:cation transporter YP_001485880.1 668567 D 315750 CDS YP_001485881.1 157691419 5619877 669948..674360 1 NC_009848.1 nonribosomal peptide synthetase subunit 674360 5619877 BPUM_0629 Bacillus pumilus SAFR-032 nonribosomal peptide synthetase subunit YP_001485881.1 669948 D 315750 CDS YP_001485882.1 157691420 5619878 674357..675898 1 NC_009848.1 beta-lactamase 675898 pbpX 5619878 pbpX Bacillus pumilus SAFR-032 beta-lactamase YP_001485882.1 674357 D 315750 CDS YP_001485883.1 157691421 5619879 676838..677548 1 NC_009848.1 GrsT; thioesterase 677548 bacT 5619879 bacT Bacillus pumilus SAFR-032 thioesterase YP_001485883.1 676838 D 315750 CDS YP_001485884.1 157691422 5619880 677545..678402 1 NC_009848.1 YqiM; 3-hydroxybutyryl-CoA dehydrogenase 678402 5619880 BPUM_0632 Bacillus pumilus SAFR-032 3-hydroxybutyryl-CoA dehydrogenase YP_001485884.1 677545 D 315750 CDS YP_001485885.1 157691423 5619881 678417..679472 1 NC_009848.1 FkbH; methoxymalonyl-ACP biosynthesis protein 679472 5619881 BPUM_0633 Bacillus pumilus SAFR-032 methoxymalonyl-ACP biosynthesis protein YP_001485885.1 678417 D 315750 CDS YP_001485886.1 157691424 5619882 679500..679769 1 NC_009848.1 possible acyl carrier protein; hypothetical protein 679769 5619882 BPUM_0634 Bacillus pumilus SAFR-032 hypothetical protein YP_001485886.1 679500 D 315750 CDS YP_001485887.1 157691425 5619883 679756..680898 1 NC_009848.1 acyl-CoA dehydrogenase (NADP(+)) 680898 5619883 BPUM_0635 Bacillus pumilus SAFR-032 acyl-CoA dehydrogenase (NADP(+)) YP_001485887.1 679756 D 315750 CDS YP_001485888.1 157691426 5619884 690025..692694 1 NC_009848.1 nonribosomal peptide synthetase subunit 692694 5619884 BPUM_0636 Bacillus pumilus SAFR-032 nonribosomal peptide synthetase subunit YP_001485888.1 690025 D 315750 CDS YP_001485889.1 157691427 5619885 692687..697192 1 NC_009848.1 polyketide synthase subunit 697192 5619885 BPUM_0637 Bacillus pumilus SAFR-032 polyketide synthase subunit YP_001485889.1 692687 D 315750 CDS YP_001485890.1 157691428 5619886 697193..704443 1 NC_009848.1 polyketide synthase subunit 704443 5619886 BPUM_0638 Bacillus pumilus SAFR-032 polyketide synthase subunit YP_001485890.1 697193 D 315750 CDS YP_001485891.1 157691429 5619887 704436..710846 1 NC_009848.1 polyketide synthase subunit 710846 5619887 BPUM_0639 Bacillus pumilus SAFR-032 polyketide synthase subunit YP_001485891.1 704436 D 315750 CDS YP_001485892.1 157691430 5619888 710839..711846 1 NC_009848.1 homoserine kinase type II 711846 yerI 5619888 yerI Bacillus pumilus SAFR-032 homoserine kinase type II YP_001485892.1 710839 D 315750 CDS YP_001485893.1 157691431 5619889 complement(711888..713294) 1 NC_009848.1 alkaline phosphatase 713294 phoB 5619889 phoB Bacillus pumilus SAFR-032 alkaline phosphatase YP_001485893.1 711888 R 315750 CDS YP_001485894.1 157691432 5619890 complement(713408..714100) 1 NC_009848.1 membrane protein SapB 714100 sapB 5619890 sapB Bacillus pumilus SAFR-032 membrane protein SapB YP_001485894.1 713408 R 315750 CDS YP_001485895.1 157691433 5619891 complement(714264..715745) 1 NC_009848.1 SSS family proline/sodium (Na+) symporter OpuE 715745 opuE 5619891 opuE Bacillus pumilus SAFR-032 SSS family proline/sodium (Na+) symporter OpuE YP_001485895.1 714264 R 315750 CDS YP_001485896.1 157691434 5619892 716144..716434 1 NC_009848.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 716434 gatC 5619892 gatC Bacillus pumilus SAFR-032 aspartyl/glutamyl-tRNA amidotransferase subunit C YP_001485896.1 716144 D 315750 CDS YP_001485897.1 157691435 5619893 716449..717906 1 NC_009848.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 717906 gatA 5619893 gatA Bacillus pumilus SAFR-032 aspartyl/glutamyl-tRNA amidotransferase subunit A YP_001485897.1 716449 D 315750 CDS YP_001485898.1 157691436 5619894 717920..719350 1 NC_009848.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 719350 gatB 5619894 gatB Bacillus pumilus SAFR-032 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_001485898.1 717920 D 315750 CDS YP_001485899.1 157691437 5619895 complement(719533..720378) 1 NC_009848.1 transcriptional regulator 720378 yerO 5619895 yerO Bacillus pumilus SAFR-032 transcriptional regulator YP_001485899.1 719533 R 315750 CDS YP_001485900.1 157691438 5619896 720510..723734 1 NC_009848.1 resistance-nodulation-cell division acriflavin:proton (H+) antiporter 723734 swrC 5619896 swrC Bacillus pumilus SAFR-032 resistance-nodulation-cell division acriflavin:proton (H+) antiporter YP_001485900.1 720510 D 315750 CDS YP_001485901.1 157691439 5619897 complement(723766..724719) 1 NC_009848.1 purine nucleosidase 724719 5619897 BPUM_0649 Bacillus pumilus SAFR-032 purine nucleosidase YP_001485901.1 723766 R 315750 CDS YP_001485902.1 157691440 5619898 724901..725809 1 NC_009848.1 similar to YegS from E. coli; putative lipid kinase 725809 yerQ 5619898 yerQ Bacillus pumilus SAFR-032 putative lipid kinase YP_001485902.1 724901 D 315750 CDS YP_001485903.1 157691441 5619899 725867..727264 1 NC_009848.1 TrmA family RNA methyltransferase 727264 yefA 5619899 yefA Bacillus pumilus SAFR-032 TrmA family RNA methyltransferase YP_001485903.1 725867 D 315750 CDS YP_001485904.1 157691442 5619900 727814..729304 1 NC_009848.1 ATP-binding protein 729304 5619900 BPUM_0652 Bacillus pumilus SAFR-032 ATP-binding protein YP_001485904.1 727814 D 315750 CDS YP_001485905.1 157691443 5619901 729297..732107 1 NC_009848.1 endonuclease 732107 5619901 BPUM_0653 Bacillus pumilus SAFR-032 endonuclease YP_001485905.1 729297 D 315750 CDS YP_001485906.1 157691444 5619902 732089..733117 1 NC_009848.1 hypothetical protein 733117 5619902 BPUM_0654 Bacillus pumilus SAFR-032 hypothetical protein YP_001485906.1 732089 D 315750 CDS YP_001485907.1 157691445 5619903 733114..734883 1 NC_009848.1 hypothetical protein 734883 5619903 BPUM_0655 Bacillus pumilus SAFR-032 hypothetical protein YP_001485907.1 733114 D 315750 CDS YP_001485908.1 157691446 5619904 complement(734880..736526) 1 NC_009848.1 DNA (cytosine-5-)-methyltransferase 736526 5619904 BPUM_0656 Bacillus pumilus SAFR-032 DNA (cytosine-5-)-methyltransferase YP_001485908.1 734880 R 315750 CDS YP_001485909.1 157691447 5619905 736808..737782 1 NC_009848.1 tRNA-dihydrouridine synthase 737782 yfjN 5619905 yfjN Bacillus pumilus SAFR-032 tRNA-dihydrouridine synthase YP_001485909.1 736808 D 315750 CDS YP_001485910.1 157691448 5619906 737890..738342 1 NC_009848.1 hypothetical protein 738342 5619906 BPUM_0658 Bacillus pumilus SAFR-032 hypothetical protein YP_001485910.1 737890 D 315750 CDS YP_001485911.1 157691449 5619907 complement(738474..739238) 1 NC_009848.1 transcriptional regulator 739238 glvR 5619907 glvR Bacillus pumilus SAFR-032 transcriptional regulator YP_001485911.1 738474 R 315750 CDS YP_001485912.1 157691450 5619908 739387..740967 1 NC_009848.1 PTS family porter component IIBC 740967 malP 5619908 malP Bacillus pumilus SAFR-032 PTS family porter component IIBC YP_001485912.1 739387 D 315750 CDS YP_001485913.1 157691451 5619909 740994..742322 1 NC_009848.1 maltose-6'-phosphate glucosidase 742322 glvA 5619909 glvA Bacillus pumilus SAFR-032 maltose-6'-phosphate glucosidase YP_001485913.1 740994 D 315750 CDS YP_001485914.1 157691452 5619910 complement(742435..742806) 1 NC_009848.1 hypothetical protein 742806 5619910 BPUM_0662 Bacillus pumilus SAFR-032 hypothetical protein YP_001485914.1 742435 R 315750 CDS YP_001485915.1 157691453 5619911 742990..743427 1 NC_009848.1 transcriptional regulator 743427 5619911 BPUM_0663 Bacillus pumilus SAFR-032 transcriptional regulator YP_001485915.1 742990 D 315750 CDS YP_001485916.1 157691454 5619912 743493..744407 1 NC_009848.1 thioredoxin-disulfide reductase 744407 5619912 BPUM_0664 Bacillus pumilus SAFR-032 thioredoxin-disulfide reductase YP_001485916.1 743493 D 315750 CDS YP_001485917.1 157691455 5619913 complement(744417..744617) 1 NC_009848.1 hypothetical protein 744617 5619913 BPUM_0665 Bacillus pumilus SAFR-032 hypothetical protein YP_001485917.1 744417 R 315750 CDS YP_001485918.1 157691456 5619914 744731..745378 1 NC_009848.1 hypothetical protein 745378 5619914 BPUM_0666 Bacillus pumilus SAFR-032 hypothetical protein YP_001485918.1 744731 D 315750 CDS YP_001485919.1 157691457 5619915 complement(745412..746740) 1 NC_009848.1 6-phospho-beta-glucosidase 746740 licH1 5619915 licH1 Bacillus pumilus SAFR-032 6-phospho-beta-glucosidase YP_001485919.1 745412 R 315750 CDS YP_001485920.1 157691458 5619916 746940..747671 1 NC_009848.1 transcriptional regulator 747671 5619916 BPUM_0668 Bacillus pumilus SAFR-032 transcriptional regulator YP_001485920.1 746940 D 315750 CDS YP_001485921.1 157691459 5619918 749039..749518 1 NC_009848.1 prolyl-tRNA synthetase 749518 5619918 BPUM_0671 Bacillus pumilus SAFR-032 prolyl-tRNA synthetase YP_001485921.1 749039 D 315750 CDS YP_001485922.1 157691460 5619919 complement(749549..750502) 1 NC_009848.1 LysR family transcriptional regulator 750502 cisL 5619919 cisL Bacillus pumilus SAFR-032 LysR family transcriptional regulator YP_001485922.1 749549 R 315750 CDS YP_001485923.1 157691461 5619920 750561..751760 1 NC_009848.1 major facilitator superfamily transporter 751760 5619920 BPUM_0673 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001485923.1 750561 D 315750 CDS YP_001485924.1 157691462 5619921 complement(751825..752904) 1 NC_009848.1 hypothetical protein 752904 yetN 5619921 yetN Bacillus pumilus SAFR-032 hypothetical protein YP_001485924.1 751825 R 315750 CDS YP_001485925.1 157691463 5619922 complement(753103..753252) 1 NC_009848.1 hypothetical protein 753252 5619922 BPUM_0675 Bacillus pumilus SAFR-032 hypothetical protein YP_001485925.1 753103 R 315750 CDS YP_001485926.1 157691464 5619923 753608..754372 1 NC_009848.1 glucose-1-phosphate cytidylyltransferase 754372 yfnH 5619923 yfnH Bacillus pumilus SAFR-032 glucose-1-phosphate cytidylyltransferase YP_001485926.1 753608 D 315750 CDS YP_001485927.1 157691465 5619924 754344..755348 1 NC_009848.1 NAD-dependent epimerase/dehydratase 755348 yfnG 5619924 yfnG Bacillus pumilus SAFR-032 NAD-dependent epimerase/dehydratase YP_001485927.1 754344 D 315750 CDS YP_001485928.1 157691466 5619925 755361..756272 1 NC_009848.1 glycosyltransferase 756272 yfnF 5619925 yfnF Bacillus pumilus SAFR-032 glycosyltransferase YP_001485928.1 755361 D 315750 CDS YP_001485929.1 157691467 5619926 756269..757459 1 NC_009848.1 glycosyltransferase 757459 yfnE 5619926 yfnE Bacillus pumilus SAFR-032 glycosyltransferase YP_001485929.1 756269 D 315750 CDS YP_001485930.1 157691468 5619927 757460..758389 1 NC_009848.1 glycosyltransferase 758389 yfnD 5619927 yfnD Bacillus pumilus SAFR-032 glycosyltransferase YP_001485930.1 757460 D 315750 CDS YP_001485931.1 157691469 5619928 complement(758425..759663) 1 NC_009848.1 major facilitator superfamily fosmidomycin:cation antiporter 759663 5619928 BPUM_0681 Bacillus pumilus SAFR-032 major facilitator superfamily fosmidomycin:cation antiporter YP_001485931.1 758425 R 315750 CDS YP_001485932.1 157691470 5619929 759663..759818 1 NC_009848.1 hypothetical protein 759818 5619929 BPUM_0682 Bacillus pumilus SAFR-032 hypothetical protein YP_001485932.1 759663 D 315750 CDS YP_001485933.1 157691471 5619930 complement(759997..762036) 1 NC_009848.1 penicillin-binding protein 762036 5619930 BPUM_0683 Bacillus pumilus SAFR-032 penicillin-binding protein YP_001485933.1 759997 R 315750 CDS YP_001485934.1 157691472 5619931 762298..763713 1 NC_009848.1 DASS family divalent anion:sodium (Na+) symporter 763713 5619931 BPUM_0684 Bacillus pumilus SAFR-032 DASS family divalent anion:sodium (Na+) symporter YP_001485934.1 762298 D 315750 CDS YP_001485935.1 157691473 5619932 complement(763719..764072) 1 NC_009848.1 hypothetical protein 764072 yocL 5619932 yocL Bacillus pumilus SAFR-032 hypothetical protein YP_001485935.1 763719 R 315750 CDS YP_001485936.1 157691474 5619933 complement(764364..764843) 1 NC_009848.1 heat shock protein 764843 yocM 5619933 yocM Bacillus pumilus SAFR-032 heat shock protein YP_001485936.1 764364 R 315750 CDS YP_001485937.1 157691475 5619934 764909..765166 1 NC_009848.1 hypothetical protein 765166 yozN 5619934 yozN Bacillus pumilus SAFR-032 hypothetical protein YP_001485937.1 764909 D 315750 CDS YP_001485938.1 157691476 5619935 765173..765406 1 NC_009848.1 hypothetical protein 765406 yocN 5619935 yocN Bacillus pumilus SAFR-032 hypothetical protein YP_001485938.1 765173 D 315750 CDS YP_001485939.1 157691477 5619936 complement(765443..766834) 1 NC_009848.1 APC family amino acid-polyamine-organocation transporter 766834 yfnA 5619936 yfnA Bacillus pumilus SAFR-032 APC family amino acid-polyamine-organocation transporter YP_001485939.1 765443 R 315750 CDS YP_001485940.1 157691478 5619937 complement(767015..768088) 1 NC_009848.1 glycosyltransferase 768088 5619937 BPUM_0690 Bacillus pumilus SAFR-032 glycosyltransferase YP_001485940.1 767015 R 315750 CDS YP_001485941.1 157691479 5619938 768222..770105 1 NC_009848.1 ABC transporter ATP-binding protein 770105 yfmR 5619938 yfmR Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001485941.1 768222 D 315750 CDS YP_001485942.1 157691480 5619939 770266..770691 1 NC_009848.1 transcriptional regulator 770691 yfmP 5619939 yfmP Bacillus pumilus SAFR-032 transcriptional regulator YP_001485942.1 770266 D 315750 CDS YP_001485943.1 157691481 5619940 770748..771938 1 NC_009848.1 major facilitator superfamily multidrug:cation symporter 771938 yfmO 5619940 yfmO Bacillus pumilus SAFR-032 major facilitator superfamily multidrug:cation symporter YP_001485943.1 770748 D 315750 CDS YP_001485944.1 157691482 5619941 complement(771984..773537) 1 NC_009848.1 ABC transporter ATP-binding protein 773537 yfmM 5619941 yfmM Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001485944.1 771984 R 315750 CDS YP_001485945.1 157691483 5619942 773690..774832 1 NC_009848.1 ATP-dependent RNA helicase 774832 yfmL 5619942 yfmL Bacillus pumilus SAFR-032 ATP-dependent RNA helicase YP_001485945.1 773690 D 315750 CDS YP_001485946.1 157691484 5619943 complement(775066..776070) 1 NC_009848.1 NADP-dependent dehydrogenase 776070 yfmJ 5619943 yfmJ Bacillus pumilus SAFR-032 NADP-dependent dehydrogenase YP_001485946.1 775066 R 315750 CDS YP_001485947.1 157691485 5619944 complement(776179..776568) 1 NC_009848.1 hypothetical protein 776568 yfmB 5619944 yfmB Bacillus pumilus SAFR-032 hypothetical protein YP_001485947.1 776179 R 315750 CDS YP_001485948.1 157691486 5619945 776790..777137 1 NC_009848.1 general stress protein 777137 5619945 BPUM_0698 Bacillus pumilus SAFR-032 general stress protein YP_001485948.1 776790 D 315750 CDS YP_001485949.1 157691487 5619946 778107..778763 1 NC_009848.1 hypothetical protein 778763 5619946 BPUM_0699 Bacillus pumilus SAFR-032 hypothetical protein YP_001485949.1 778107 D 315750 CDS YP_001485950.1 157691488 5619947 779044..779769 1 NC_009848.1 GTP cyclohydrolase II 779769 5619947 BPUM_0700 Bacillus pumilus SAFR-032 GTP cyclohydrolase II YP_001485950.1 779044 D 315750 CDS YP_001485951.1 157691489 5619949 780611..782368 1 NC_009848.1 WD-40 repeat-containing protein 782368 5619949 BPUM_0702 Bacillus pumilus SAFR-032 WD-40 repeat-containing protein YP_001485951.1 780611 D 315750 CDS YP_001485952.1 157691490 5619950 782645..783730 1 NC_009848.1 bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase 783730 ribD2 5619950 ribD2 Bacillus pumilus SAFR-032 bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase YP_001485952.1 782645 D 315750 CDS YP_001485953.1 157691491 5619952 786048..786719 1 NC_009848.1 hypothetical protein 786719 5619952 BPUM_0706 Bacillus pumilus SAFR-032 hypothetical protein YP_001485953.1 786048 D 315750 CDS YP_001485954.1 157691492 5619953 786826..788460 1 NC_009848.1 sensor histidine kinase 788460 citS 5619953 citS Bacillus pumilus SAFR-032 sensor histidine kinase YP_001485954.1 786826 D 315750 CDS YP_001485955.1 157691493 5619954 788461..789162 1 NC_009848.1 response regulator 789162 citT 5619954 citT Bacillus pumilus SAFR-032 response regulator YP_001485955.1 788461 D 315750 CDS YP_001485956.1 157691494 5619955 789166..790146 1 NC_009848.1 TTT family tricarboxylate membrane protein 790146 yflP 5619955 yflP Bacillus pumilus SAFR-032 TTT family tricarboxylate membrane protein YP_001485956.1 789166 D 315750 CDS YP_001485957.1 157691495 5619956 790338..791636 1 NC_009848.1 CitMHS family citrate-magnesium (Mg2+):citrate symporter 791636 citM 5619956 citM Bacillus pumilus SAFR-032 CitMHS family citrate-magnesium (Mg2+):citrate symporter YP_001485957.1 790338 D 315750 CDS YP_001485958.1 157691496 5619957 791817..793448 1 NC_009848.1 M14 family carboxypeptidase 793448 5619957 BPUM_0711 Bacillus pumilus SAFR-032 M14 family carboxypeptidase YP_001485958.1 791817 D 315750 CDS YP_001485959.1 157691497 5619958 complement(793521..794006) 1 NC_009848.1 phenolic acid decarboxylase 794006 padC 5619958 padC Bacillus pumilus SAFR-032 phenolic acid decarboxylase YP_001485959.1 793521 R 315750 CDS YP_001485960.1 157691498 5619959 794119..794676 1 NC_009848.1 transcriptional regulator 794676 padR 5619959 padR Bacillus pumilus SAFR-032 transcriptional regulator YP_001485960.1 794119 D 315750 CDS YP_001485961.1 157691499 5619960 794781..795887 1 NC_009848.1 nitric oxide synthase 795887 nos 5619960 nos Bacillus pumilus SAFR-032 nitric oxide synthase YP_001485961.1 794781 D 315750 CDS YP_001485962.1 157691500 5619961 complement(795974..796282) 1 NC_009848.1 acylphosphate phosphohydrolase; acylphosphatase 796282 5619961 BPUM_0715 Bacillus pumilus SAFR-032 acylphosphatase YP_001485962.1 795974 R 315750 CDS YP_001485963.1 157691501 5619962 796361..797020 1 NC_009848.1 possible molybdenum cofactor sulphurase; hypothetical protein 797020 yflK 5619962 yflK Bacillus pumilus SAFR-032 hypothetical protein YP_001485963.1 796361 D 315750 CDS YP_001485964.1 157691502 5619963 complement(797063..797200) 1 NC_009848.1 hypothetical protein 797200 5619963 BPUM_0717 Bacillus pumilus SAFR-032 hypothetical protein YP_001485964.1 797063 R 315750 CDS YP_001485965.1 157691503 5619964 complement(797335..797496) 1 NC_009848.1 hypothetical protein 797496 yflI 5619964 yflI Bacillus pumilus SAFR-032 hypothetical protein YP_001485965.1 797335 R 315750 CDS YP_001485966.1 157691504 5619965 complement(797620..798369) 1 NC_009848.1 catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential; methionine aminopeptidase 798369 yflG 5619965 yflG Bacillus pumilus SAFR-032 methionine aminopeptidase YP_001485966.1 797620 R 315750 CDS YP_001485967.1 157691505 5619966 798551..799921 1 NC_009848.1 PTS family glucose/glucoside (glc) porter component IIBC 799921 nagP 5619966 nagP Bacillus pumilus SAFR-032 PTS family glucose/glucoside (glc) porter component IIBC YP_001485967.1 798551 D 315750 CDS YP_001485968.1 157691506 5619967 complement(799940..800698) 1 NC_009848.1 hypothetical protein 800698 5619967 BPUM_0721 Bacillus pumilus SAFR-032 hypothetical protein YP_001485968.1 799940 R 315750 CDS YP_001485969.1 157691507 5619968 800893..801396 1 NC_009848.1 hypothetical protein 801396 5619968 BPUM_0722 Bacillus pumilus SAFR-032 hypothetical protein YP_001485969.1 800893 D 315750 CDS YP_001485970.1 157691508 5619969 complement(801441..802028) 1 NC_009848.1 hypothetical protein 802028 yjgB 5619969 yjgB Bacillus pumilus SAFR-032 hypothetical protein YP_001485970.1 801441 R 315750 CDS YP_001485971.1 157691509 5619970 complement(802129..804108) 1 NC_009848.1 sulfatase 804108 yflE 5619970 yflE Bacillus pumilus SAFR-032 sulfatase YP_001485971.1 802129 R 315750 CDS YP_001485972.1 157691510 5619971 804688..806346 1 NC_009848.1 diaminobutyrate decarboxylase 806346 5619971 BPUM_0725 Bacillus pumilus SAFR-032 diaminobutyrate decarboxylase YP_001485972.1 804688 D 315750 CDS YP_001485973.1 157691511 5619972 806378..808102 1 NC_009848.1 sensor histidine kinase 808102 5619972 BPUM_0726 Bacillus pumilus SAFR-032 sensor histidine kinase YP_001485973.1 806378 D 315750 CDS YP_001485974.1 157691512 5619973 808345..808731 1 NC_009848.1 hypothetical protein 808731 5619973 BPUM_0727 Bacillus pumilus SAFR-032 hypothetical protein YP_001485974.1 808345 D 315750 CDS YP_001485975.1 157691513 5619974 808895..810331 1 NC_009848.1 PTS family trehalose porter component IIBC 810331 treP 5619974 treP Bacillus pumilus SAFR-032 PTS family trehalose porter component IIBC YP_001485975.1 808895 D 315750 CDS YP_001485976.1 157691514 5619975 810347..812047 1 NC_009848.1 alpha,alpha-phosphotrehalase 812047 treA 5619975 treA Bacillus pumilus SAFR-032 alpha,alpha-phosphotrehalase YP_001485976.1 810347 D 315750 CDS YP_001485977.1 157691515 5619976 812067..812795 1 NC_009848.1 trehalose operon transcriptional repressor; GntR family transcriptional regulator 812795 treR 5619976 treR Bacillus pumilus SAFR-032 GntR family transcriptional regulator YP_001485977.1 812067 D 315750 CDS YP_001485978.1 157691516 5619978 complement(813339..817565) 1 NC_009848.1 in Escherichia coli this is a periplasmic enzyme while in gram positive organisms it may be anchored at the cell surface; this protein appears to consist of a dimer fusion; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein 817565 yfkN 5619978 yfkN Bacillus pumilus SAFR-032 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein YP_001485978.1 813339 R 315750 CDS YP_001485979.1 157691517 5619979 817883..818401 1 NC_009848.1 C56 family peptidase 818401 yfkM 5619979 yfkM Bacillus pumilus SAFR-032 C56 family peptidase YP_001485979.1 817883 D 315750 CDS YP_001485980.1 157691518 5619980 complement(818499..818714) 1 NC_009848.1 hypothetical protein 818714 yfkK 5619980 yfkK Bacillus pumilus SAFR-032 hypothetical protein YP_001485980.1 818499 R 315750 CDS YP_001485981.1 157691519 5619981 complement(818792..820147) 1 NC_009848.1 AGCS family alanine or glycine:sodium (Na+) or proton (H+) symporter 820147 yflA 5619981 yflA Bacillus pumilus SAFR-032 AGCS family alanine or glycine:sodium (Na+) or proton (H+) symporter YP_001485981.1 818792 R 315750 CDS YP_001485982.1 157691520 5619982 820322..820792 1 NC_009848.1 protein-tyrosine-phosphatase 820792 yfkJ 5619982 yfkJ Bacillus pumilus SAFR-032 protein-tyrosine-phosphatase YP_001485982.1 820322 D 315750 CDS YP_001485983.1 157691521 5619983 820813..821145 1 NC_009848.1 hypothetical protein 821145 yfkI 5619983 yfkI Bacillus pumilus SAFR-032 hypothetical protein YP_001485983.1 820813 D 315750 CDS YP_001485984.1 157691522 5619984 821164..821982 1 NC_009848.1 hypothetical protein 821982 yfkH 5619984 yfkH Bacillus pumilus SAFR-032 hypothetical protein YP_001485984.1 821164 D 315750 CDS YP_001485985.1 157691523 5619985 complement(822192..823373) 1 NC_009848.1 major facilitator superfamily transporter 823373 yfkF 5619985 yfkF Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001485985.1 822192 R 315750 CDS YP_001485986.1 157691524 5619986 823449..823826 1 NC_009848.1 possible stress response protein; hypothetical protein 823826 5619986 BPUM_0740 Bacillus pumilus SAFR-032 hypothetical protein YP_001485986.1 823449 D 315750 CDS YP_001485987.1 157691525 5619987 823891..824955 1 NC_009848.1 Ca2+ antiporter 824955 yfkE 5619987 yfkE Bacillus pumilus SAFR-032 Ca2+ antiporter YP_001485987.1 823891 D 315750 CDS YP_001485988.1 157691526 5619988 825023..825805 1 NC_009848.1 sporulation protein YfkD 825805 yfkD 5619988 yfkD Bacillus pumilus SAFR-032 sporulation protein YfkD YP_001485988.1 825023 D 315750 CDS YP_001485989.1 157691527 5619989 complement(826318..827037) 1 NC_009848.1 hypothetical protein 827037 yeeI 5619989 yeeI Bacillus pumilus SAFR-032 hypothetical protein YP_001485989.1 826318 R 315750 CDS YP_001485990.1 157691528 5619990 complement(827169..827570) 1 NC_009848.1 hypothetical protein 827570 5619990 BPUM_0744 Bacillus pumilus SAFR-032 hypothetical protein YP_001485990.1 827169 R 315750 CDS YP_001485991.1 157691529 5619991 complement(827673..828509) 1 NC_009848.1 MscS family small conductance mechanosenstive ion channel protein 828509 5619991 BPUM_0745 Bacillus pumilus SAFR-032 MscS family small conductance mechanosenstive ion channel protein YP_001485991.1 827673 R 315750 CDS YP_001485992.1 157691530 5619992 complement(828517..829638) 1 NC_009848.1 thioredoxin 829638 yfkA 5619992 yfkA Bacillus pumilus SAFR-032 thioredoxin YP_001485992.1 828517 R 315750 CDS YP_001485993.1 157691531 5619993 829785..829976 1 NC_009848.1 hypothetical protein 829976 yfjT 5619993 yfjT Bacillus pumilus SAFR-032 hypothetical protein YP_001485993.1 829785 D 315750 CDS YP_001485994.1 157691532 5619994 830079..830870 1 NC_009848.1 poylsaccharide deacetylase 830870 yfjS 5619994 yfjS Bacillus pumilus SAFR-032 poylsaccharide deacetylase YP_001485994.1 830079 D 315750 CDS YP_001485995.1 157691533 5619995 complement(830906..831397) 1 NC_009848.1 hypothetical protein 831397 5619995 BPUM_0749 Bacillus pumilus SAFR-032 hypothetical protein YP_001485995.1 830906 R 315750 CDS YP_001485996.1 157691534 5619996 complement(831430..832389) 1 NC_009848.1 MIT family metal ion transporter CorA 832389 corA 5619996 corA Bacillus pumilus SAFR-032 MIT family metal ion transporter CorA YP_001485996.1 831430 R 315750 CDS YP_001485997.1 157691535 5619997 complement(832523..833035) 1 NC_009848.1 hypothetical protein 833035 5619997 BPUM_0751 Bacillus pumilus SAFR-032 hypothetical protein YP_001485997.1 832523 R 315750 CDS YP_001485998.1 157691536 5619998 833336..834337 1 NC_009848.1 yfjP; DNA-3-methyladenine glycosylase II 834337 alkA 5619998 alkA Bacillus pumilus SAFR-032 DNA-3-methyladenine glycosylase II YP_001485998.1 833336 D 315750 CDS YP_001485999.1 157691537 5619999 834436..835821 1 NC_009848.1 yfjO; tRNA (uracil-5-)-methyltransferase 835821 trmA 5619999 trmA Bacillus pumilus SAFR-032 tRNA (uracil-5-)-methyltransferase YP_001485999.1 834436 D 315750 CDS YP_001486000.1 157691538 5620000 835953..836537 1 NC_009848.1 TetR family transcriptional regulator 836537 5620000 BPUM_0754 Bacillus pumilus SAFR-032 TetR family transcriptional regulator YP_001486000.1 835953 D 315750 CDS YP_001486001.1 157691539 5620001 836595..838481 1 NC_009848.1 bifunctional nucleotide sugar epimerase/hydrolase 838481 5620001 BPUM_0755 Bacillus pumilus SAFR-032 bifunctional nucleotide sugar epimerase/hydrolase YP_001486001.1 836595 D 315750 CDS YP_001486002.1 157691540 5620002 838554..838985 1 NC_009848.1 hypothetical protein 838985 5620002 BPUM_0756 Bacillus pumilus SAFR-032 hypothetical protein YP_001486002.1 838554 D 315750 CDS YP_001486003.1 157691541 5620003 838975..839487 1 NC_009848.1 hypothetical protein 839487 5620003 BPUM_0757 Bacillus pumilus SAFR-032 hypothetical protein YP_001486003.1 838975 D 315750 CDS YP_001486004.1 157691542 5620004 839627..840454 1 NC_009848.1 transcriptional regulator 840454 5620004 BPUM_0758 Bacillus pumilus SAFR-032 transcriptional regulator YP_001486004.1 839627 D 315750 CDS YP_001486005.1 157691543 5620005 840481..841668 1 NC_009848.1 possible chloramphenicol resistance protein; major facilitator superfamily transporter 841668 ybcL 5620005 ybcL Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001486005.1 840481 D 315750 CDS YP_001486006.1 157691544 5620006 841924..843108 1 NC_009848.1 hypothetical protein 843108 5620006 BPUM_0760 Bacillus pumilus SAFR-032 hypothetical protein YP_001486006.1 841924 D 315750 CDS YP_001486007.1 157691545 5620007 843710..845641 1 NC_009848.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); Bacillus have two copies of the threonyl-tRNA synthetase, threonine starvation induces both proteins; threonyl-tRNA synthetase 845641 thrZ 5620007 thrZ Bacillus pumilus SAFR-032 threonyl-tRNA synthetase YP_001486007.1 843710 D 315750 CDS YP_001486008.1 157691546 5620008 845680..845835 1 NC_009848.1 hypothetical protein 845835 5620008 BPUM_0762 Bacillus pumilus SAFR-032 hypothetical protein YP_001486008.1 845680 D 315750 CDS YP_001486009.1 157691547 5620009 845817..846383 1 NC_009848.1 hypothetical protein 846383 5620009 BPUM_0763 Bacillus pumilus SAFR-032 hypothetical protein YP_001486009.1 845817 D 315750 CDS YP_001486010.1 157691548 5620010 846410..847687 1 NC_009848.1 hypothetical protein 847687 5620010 BPUM_0764 Bacillus pumilus SAFR-032 hypothetical protein YP_001486010.1 846410 D 315750 CDS YP_001486011.1 157691549 5620011 848010..848282 1 NC_009848.1 hypothetical protein 848282 5620011 BPUM_0765 Bacillus pumilus SAFR-032 hypothetical protein YP_001486011.1 848010 D 315750 CDS YP_001486012.1 157691550 5620012 complement(848332..849840) 1 NC_009848.1 transcriptional regulator 849840 5620012 BPUM_0766 Bacillus pumilus SAFR-032 transcriptional regulator YP_001486012.1 848332 R 315750 CDS YP_001486013.1 157691551 5620013 850553..856696 1 NC_009848.1 collagen adhesion protein 856696 5620013 BPUM_0767 Bacillus pumilus SAFR-032 collagen adhesion protein YP_001486013.1 850553 D 315750 CDS YP_001486014.1 157691552 5620015 856718..857320 1 NC_009848.1 possible sortase; C60A subfamily peptidase 857320 5620015 BPUM_0769 Bacillus pumilus SAFR-032 C60A subfamily peptidase YP_001486014.1 856718 D 315750 CDS YP_001486015.1 157691553 5620016 857313..857639 1 NC_009848.1 hypothetical protein 857639 5620016 BPUM_0770 Bacillus pumilus SAFR-032 hypothetical protein YP_001486015.1 857313 D 315750 CDS YP_001486016.1 157691554 5620017 complement(857693..858007) 1 NC_009848.1 DMT superfamily drug/metabolite transporter 858007 5620017 BPUM_0771 Bacillus pumilus SAFR-032 DMT superfamily drug/metabolite transporter YP_001486016.1 857693 R 315750 CDS YP_001486017.1 157691555 5620018 complement(858008..858352) 1 NC_009848.1 DMT superfamily drug/metabolite transporter 858352 5620018 BPUM_0772 Bacillus pumilus SAFR-032 DMT superfamily drug/metabolite transporter YP_001486017.1 858008 R 315750 CDS YP_001486018.1 157691556 5620019 complement(858433..859158) 1 NC_009848.1 transcriptional regulator 859158 5620019 BPUM_0773 Bacillus pumilus SAFR-032 transcriptional regulator YP_001486018.1 858433 R 315750 CDS YP_001486019.1 157691557 5620020 859185..859733 1 NC_009848.1 teicoplanin resistance protein VanZ 859733 vanZ 5620020 vanZ Bacillus pumilus SAFR-032 teicoplanin resistance protein VanZ YP_001486019.1 859185 D 315750 CDS YP_001486020.1 157691558 5620021 859730..860194 1 NC_009848.1 hypothetical protein 860194 yfjM 5620021 yfjM Bacillus pumilus SAFR-032 hypothetical protein YP_001486020.1 859730 D 315750 CDS YP_001486021.1 157691559 5620022 860345..860974 1 NC_009848.1 rhamnogalacturan acetylesterase 860974 yesY 5620022 yesY Bacillus pumilus SAFR-032 rhamnogalacturan acetylesterase YP_001486021.1 860345 D 315750 CDS YP_001486022.1 157691560 5620023 861128..862168 1 NC_009848.1 thioredoxin-disulfide reductase 862168 ycgT 5620023 ycgT Bacillus pumilus SAFR-032 thioredoxin-disulfide reductase YP_001486022.1 861128 D 315750 CDS YP_001486023.1 157691561 5620025 complement(862576..862809) 1 NC_009848.1 hypothetical protein 862809 5620025 BPUM_0779 Bacillus pumilus SAFR-032 hypothetical protein YP_001486023.1 862576 R 315750 CDS YP_001486024.1 157691562 5620026 862909..863475 1 NC_009848.1 DNA-directed RNA polymerase sigma subunit 863475 5620026 BPUM_0780 Bacillus pumilus SAFR-032 DNA-directed RNA polymerase sigma subunit YP_001486024.1 862909 D 315750 CDS YP_001486025.1 157691563 5620027 863472..864218 1 NC_009848.1 hypothetical protein 864218 5620027 BPUM_0781 Bacillus pumilus SAFR-032 hypothetical protein YP_001486025.1 863472 D 315750 CDS YP_001486026.1 157691564 5620028 864414..864989 1 NC_009848.1 hypothetical protein 864989 5620028 BPUM_0782 Bacillus pumilus SAFR-032 hypothetical protein YP_001486026.1 864414 D 315750 CDS YP_001486027.1 157691565 5620029 865078..866103 1 NC_009848.1 NADPH:quinone reductase 866103 5620029 BPUM_0783 Bacillus pumilus SAFR-032 NADPH:quinone reductase YP_001486027.1 865078 D 315750 CDS YP_001486028.1 157691566 5620030 866100..866627 1 NC_009848.1 metal-dependent hydrolase 866627 yfiT 5620030 yfiT Bacillus pumilus SAFR-032 metal-dependent hydrolase YP_001486028.1 866100 D 315750 CDS YP_001486029.1 157691567 5620031 866640..866930 1 NC_009848.1 hypothetical protein 866930 5620031 BPUM_0785 Bacillus pumilus SAFR-032 hypothetical protein YP_001486029.1 866640 D 315750 CDS YP_001486030.1 157691568 5620032 complement(866953..867432) 1 NC_009848.1 transcriptional regulator 867432 yfiV 5620032 yfiV Bacillus pumilus SAFR-032 transcriptional regulator YP_001486030.1 866953 R 315750 CDS YP_001486031.1 157691569 5620033 867601..870171 1 NC_009848.1 hypothetical protein 870171 5620033 BPUM_0787 Bacillus pumilus SAFR-032 hypothetical protein YP_001486031.1 867601 D 315750 CDS YP_001486032.1 157691570 5620034 870263..870811 1 NC_009848.1 hypothetical protein 870811 5620034 BPUM_0788 Bacillus pumilus SAFR-032 hypothetical protein YP_001486032.1 870263 D 315750 CDS YP_001486033.1 157691571 5620035 871148..871615 1 NC_009848.1 hypothetical protein 871615 5620035 BPUM_0789 Bacillus pumilus SAFR-032 hypothetical protein YP_001486033.1 871148 D 315750 CDS YP_001486034.1 157691572 5620036 complement(871652..872908) 1 NC_009848.1 transcriptional activator 872908 5620036 BPUM_0790 Bacillus pumilus SAFR-032 transcriptional activator YP_001486034.1 871652 R 315750 CDS YP_001486035.1 157691573 5620037 873180..873767 1 NC_009848.1 nitroreductase family protein 873767 yfhC 5620037 yfhC Bacillus pumilus SAFR-032 nitroreductase family protein YP_001486035.1 873180 D 315750 CDS YP_001486036.1 157691574 5620038 complement(874013..874168) 1 NC_009848.1 sporulation protein YfhD 874168 yfhD 5620038 yfhD Bacillus pumilus SAFR-032 sporulation protein YfhD YP_001486036.1 874013 R 315750 CDS YP_001486037.1 157691575 5620039 874123..874281 1 NC_009848.1 hypothetical protein 874281 5620039 BPUM_0793 Bacillus pumilus SAFR-032 hypothetical protein YP_001486037.1 874123 D 315750 CDS YP_001486038.1 157691576 5620040 complement(874393..875289) 1 NC_009848.1 nucleoside diphosphate sugar epimerase 875289 yfhF 5620040 yfhF Bacillus pumilus SAFR-032 nucleoside diphosphate sugar epimerase YP_001486038.1 874393 R 315750 CDS YP_001486039.1 157691577 5620041 875384..876175 1 NC_009848.1 binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 876175 recX 5620041 recX Bacillus pumilus SAFR-032 recombination regulator RecX YP_001486039.1 875384 D 315750 CDS YP_001486040.1 157691578 5620042 876179..876493 1 NC_009848.1 hypothetical protein 876493 yfhH 5620042 yfhH Bacillus pumilus SAFR-032 hypothetical protein YP_001486040.1 876179 D 315750 CDS YP_001486041.1 157691579 5620043 complement(876516..876689) 1 NC_009848.1 hypothetical protein 876689 5620043 BPUM_0797 Bacillus pumilus SAFR-032 hypothetical protein YP_001486041.1 876516 R 315750 CDS YP_001486042.1 157691580 5620044 complement(876715..876864) 1 NC_009848.1 SASP K; found in the forespore compartment; acid-soluble spore protein K 876864 sspK 5620044 sspK Bacillus pumilus SAFR-032 acid-soluble spore protein K YP_001486042.1 876715 R 315750 CDS YP_001486043.1 157691581 5620045 876981..877253 1 NC_009848.1 hypothetical protein 877253 yfhJ 5620045 yfhJ Bacillus pumilus SAFR-032 hypothetical protein YP_001486043.1 876981 D 315750 CDS YP_001486044.1 157691582 5620046 877544..878527 1 NC_009848.1 possible glycosyltransferase; stress response protein 878527 csbB 5620046 csbB Bacillus pumilus SAFR-032 stress response protein YP_001486044.1 877544 D 315750 CDS YP_001486045.1 157691583 5620047 878615..881209 1 NC_009848.1 hypothetical protein 881209 yfhO 5620047 yfhO Bacillus pumilus SAFR-032 hypothetical protein YP_001486045.1 878615 D 315750 CDS YP_001486046.1 157691584 5620048 complement(881232..882365) 1 NC_009848.1 monooxygenase 882365 5620048 BPUM_0802 Bacillus pumilus SAFR-032 monooxygenase YP_001486046.1 881232 R 315750 CDS YP_001486047.1 157691585 5620049 882587..883039 1 NC_009848.1 hypothetical protein 883039 5620049 BPUM_0803 Bacillus pumilus SAFR-032 hypothetical protein YP_001486047.1 882587 D 315750 CDS YP_001486048.1 157691586 5620050 complement(883044..883466) 1 NC_009848.1 hypothetical protein 883466 yvrL 5620050 yvrL Bacillus pumilus SAFR-032 hypothetical protein YP_001486048.1 883044 R 315750 CDS YP_001486049.1 157691587 5620051 complement(883535..884698) 1 NC_009848.1 oxalate decarboxylase 884698 oxdC 5620051 oxdC Bacillus pumilus SAFR-032 oxalate decarboxylase YP_001486049.1 883535 R 315750 CDS YP_001486050.1 157691588 5620052 complement(884793..884957) 1 NC_009848.1 hypothetical protein 884957 5620052 BPUM_0806 Bacillus pumilus SAFR-032 hypothetical protein YP_001486050.1 884793 R 315750 CDS YP_001486051.1 157691589 5620053 885124..885726 1 NC_009848.1 DNA-directed RNA polymerase sigma subunit FliA 885726 yvrI 5620053 yvrI Bacillus pumilus SAFR-032 DNA-directed RNA polymerase sigma subunit FliA YP_001486051.1 885124 D 315750 CDS YP_001486052.1 157691590 5620054 885680..885895 1 NC_009848.1 hypothetical protein 885895 yvrH 5620054 yvrH Bacillus pumilus SAFR-032 hypothetical protein YP_001486052.1 885680 D 315750 CDS YP_001486053.1 157691591 5620055 complement(885923..886903) 1 NC_009848.1 membrane bound metal dependent hydrolase 886903 yfhP 5620055 yfhP Bacillus pumilus SAFR-032 membrane bound metal dependent hydrolase YP_001486053.1 885923 R 315750 CDS YP_001486054.1 157691592 5620056 887095..888195 1 NC_009848.1 YfhQ; adenine glycosylase 888195 mutY 5620056 mutY Bacillus pumilus SAFR-032 adenine glycosylase YP_001486054.1 887095 D 315750 CDS YP_001486055.1 157691593 5620057 complement(888182..888406) 1 NC_009848.1 hypothetical protein 888406 yfhS 5620057 yfhS Bacillus pumilus SAFR-032 hypothetical protein YP_001486055.1 888182 R 315750 CDS YP_001486056.1 157691594 5620058 888488..889240 1 NC_009848.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 889240 fabL 5620058 fabL Bacillus pumilus SAFR-032 enoyl-ACP reductase YP_001486056.1 888488 D 315750 CDS YP_001486057.1 157691595 5620059 889301..889465 1 NC_009848.1 small acid-soluble spore protein E 889465 sspE 5620059 sspE Bacillus pumilus SAFR-032 small acid-soluble spore protein E YP_001486057.1 889301 D 315750 CDS YP_001486058.1 157691596 5620060 complement(889585..890940) 1 NC_009848.1 transposase 890940 5620060 BPUM_0814 Bacillus pumilus SAFR-032 transposase YP_001486058.1 889585 R 315750 CDS YP_001486059.1 157691597 5620061 complement(891080..891328) 1 NC_009848.1 hypothetical protein 891328 5620061 BPUM_0815 Bacillus pumilus SAFR-032 hypothetical protein YP_001486059.1 891080 R 315750 CDS YP_001486060.1 157691598 5620062 891378..891638 1 NC_009848.1 hypothetical protein 891638 5620062 BPUM_0816 Bacillus pumilus SAFR-032 hypothetical protein YP_001486060.1 891378 D 315750 CDS YP_001486061.1 157691599 5620063 891786..892316 1 NC_009848.1 hypothetical protein 892316 5620063 BPUM_0817 Bacillus pumilus SAFR-032 hypothetical protein YP_001486061.1 891786 D 315750 CDS YP_001486062.1 157691600 5620064 892411..894153 1 NC_009848.1 ABC transporter ATP-binding protein 894153 5620064 BPUM_0818 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001486062.1 892411 D 315750 CDS YP_001486063.1 157691601 5620065 894266..895288 1 NC_009848.1 oligopeptide ABC transporter ATP-binding protein 895288 appDC 5620065 appDC Bacillus pumilus SAFR-032 oligopeptide ABC transporter ATP-binding protein YP_001486063.1 894266 D 315750 CDS YP_001486064.1 157691602 5620066 895257..896234 1 NC_009848.1 oligopeptide ABC transporter ATP-binding protein 896234 appFC 5620066 appFC Bacillus pumilus SAFR-032 oligopeptide ABC transporter ATP-binding protein YP_001486064.1 895257 D 315750 CDS YP_001486065.1 157691603 5620067 896209..897795 1 NC_009848.1 peptide ABC transporter ATP-binding protein 897795 5620067 BPUM_0821 Bacillus pumilus SAFR-032 peptide ABC transporter ATP-binding protein YP_001486065.1 896209 D 315750 CDS YP_001486066.1 157691604 5620068 897812..898858 1 NC_009848.1 peptide ABC transporter membrane protein 898858 appBC 5620068 appBC Bacillus pumilus SAFR-032 peptide ABC transporter membrane protein YP_001486066.1 897812 D 315750 CDS YP_001486067.1 157691605 5620069 898876..899772 1 NC_009848.1 oligopeptide ABC transporter membrane protein 899772 appCC 5620069 appCC Bacillus pumilus SAFR-032 oligopeptide ABC transporter membrane protein YP_001486067.1 898876 D 315750 CDS YP_001486068.1 157691606 5620070 complement(899802..900875) 1 NC_009848.1 hypothetical protein 900875 ygaE 5620070 ygaE Bacillus pumilus SAFR-032 hypothetical protein YP_001486068.1 899802 R 315750 CDS YP_001486069.1 157691607 5620071 complement(901122..902417) 1 NC_009848.1 converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate; glutamate-1-semialdehyde aminotransferase 902417 gsaB 5620071 gsaB Bacillus pumilus SAFR-032 glutamate-1-semialdehyde aminotransferase YP_001486069.1 901122 R 315750 CDS YP_001486070.1 157691608 5620072 902547..903014 1 NC_009848.1 bacterioferritin comigratory protein (BCP); peroxiredoxin YgaF 903014 ygaF 5620072 ygaF Bacillus pumilus SAFR-032 peroxiredoxin YgaF YP_001486070.1 902547 D 315750 CDS YP_001486071.1 157691609 5620073 903173..903610 1 NC_009848.1 Fur family transcriptional regulator PerR 903610 perR 5620073 perR Bacillus pumilus SAFR-032 Fur family transcriptional regulator PerR YP_001486071.1 903173 D 315750 CDS YP_001486072.1 157691610 5620074 complement(903645..903992) 1 NC_009848.1 hypothetical protein 903992 ygzB 5620074 ygzB Bacillus pumilus SAFR-032 hypothetical protein YP_001486072.1 903645 R 315750 CDS YP_001486073.1 157691611 5620075 904182..905060 1 NC_009848.1 hypothetical protein 905060 ygxA 5620075 ygxA Bacillus pumilus SAFR-032 hypothetical protein YP_001486073.1 904182 D 315750 CDS YP_001486074.1 157691612 5620095 911983..912438 1 NC_009848.1 hypothetical protein 912438 5620095 BPUM_0830 Bacillus pumilus SAFR-032 hypothetical protein YP_001486074.1 911983 D 315750 CDS YP_001486075.1 157691613 5620096 912848..913657 1 NC_009848.1 aminoglycoside phosphotransferase 913657 5620096 BPUM_0831 Bacillus pumilus SAFR-032 aminoglycoside phosphotransferase YP_001486075.1 912848 D 315750 CDS YP_001486076.1 157691614 5620097 913802..914236 1 NC_009848.1 hypothetical protein 914236 5620097 BPUM_0832 Bacillus pumilus SAFR-032 hypothetical protein YP_001486076.1 913802 D 315750 CDS YP_001486077.1 157691615 5620098 914307..915005 1 NC_009848.1 hypothetical protein 915005 5620098 BPUM_0833 Bacillus pumilus SAFR-032 hypothetical protein YP_001486077.1 914307 D 315750 CDS YP_001486078.1 157691616 5620099 complement(915024..915581) 1 NC_009848.1 GpmB; fructose-2,6-bisphosphate 2-phosphatase 915581 5620099 BPUM_0834 Bacillus pumilus SAFR-032 fructose-2,6-bisphosphate 2-phosphatase YP_001486078.1 915024 R 315750 CDS YP_001486079.1 157691617 5620100 complement(915637..915828) 1 NC_009848.1 hypothetical protein 915828 5620100 BPUM_0835 Bacillus pumilus SAFR-032 hypothetical protein YP_001486079.1 915637 R 315750 CDS YP_001486080.1 157691618 5620101 complement(915951..916274) 1 NC_009848.1 hypothetical protein 916274 5620101 BPUM_0836 Bacillus pumilus SAFR-032 hypothetical protein YP_001486080.1 915951 R 315750 CDS YP_001486081.1 157691619 5620102 complement(916286..916975) 1 NC_009848.1 hypothetical protein 916975 5620102 BPUM_0837 Bacillus pumilus SAFR-032 hypothetical protein YP_001486081.1 916286 R 315750 CDS YP_001486082.1 157691620 5620103 complement(916994..917797) 1 NC_009848.1 hypothetical protein 917797 5620103 BPUM_0838 Bacillus pumilus SAFR-032 hypothetical protein YP_001486082.1 916994 R 315750 CDS YP_001486083.1 157691621 5620104 918331..920271 1 NC_009848.1 MdoB; phosphoglycerol transferase 920271 yfnI 5620104 yfnI Bacillus pumilus SAFR-032 phosphoglycerol transferase YP_001486083.1 918331 D 315750 CDS YP_001486084.1 157691622 5620105 920323..921000 1 NC_009848.1 signal peptidase 1 921000 sipP 5620105 sipP Bacillus pumilus SAFR-032 signal peptidase 1 YP_001486084.1 920323 D 315750 CDS YP_001486085.1 157691623 5620106 921027..922460 1 NC_009848.1 transposase 922460 5620106 BPUM_0841 Bacillus pumilus SAFR-032 transposase YP_001486085.1 921027 D 315750 CDS YP_001486086.1 157691624 5620107 complement(922570..923322) 1 NC_009848.1 hypothetical protein 923322 yrpD 5620107 yrpD Bacillus pumilus SAFR-032 hypothetical protein YP_001486086.1 922570 R 315750 CDS YP_001486087.1 157691625 5620108 complement(923448..923921) 1 NC_009848.1 rRNA methyltransferase-like protein 923921 cspR 5620108 cspR Bacillus pumilus SAFR-032 rRNA methyltransferase-like protein YP_001486087.1 923448 R 315750 CDS YP_001486088.1 157691626 5620109 complement(923965..924867) 1 NC_009848.1 hypothetical protein 924867 yhbB 5620109 yhbB Bacillus pumilus SAFR-032 hypothetical protein YP_001486088.1 923965 R 315750 CDS YP_001486089.1 157691627 5620110 complement(924929..926080) 1 NC_009848.1 hypothetical protein 926080 yhbA 5620110 yhbA Bacillus pumilus SAFR-032 hypothetical protein YP_001486089.1 924929 R 315750 CDS YP_001486090.1 157691628 5620111 926161..926757 1 NC_009848.1 hypothetical protein 926757 yhzB 5620111 yhzB Bacillus pumilus SAFR-032 hypothetical protein YP_001486090.1 926161 D 315750 CDS YP_001486091.1 157691629 5620113 complement(927057..927737) 1 NC_009848.1 hypothetical protein 927737 5620113 BPUM_0847 Bacillus pumilus SAFR-032 hypothetical protein YP_001486091.1 927057 R 315750 CDS YP_001486092.1 157691630 5620114 complement(927818..928099) 1 NC_009848.1 hypothetical protein 928099 5620114 BPUM_0848 Bacillus pumilus SAFR-032 hypothetical protein YP_001486092.1 927818 R 315750 CDS YP_001486093.1 157691631 5620115 complement(928096..929001) 1 NC_009848.1 hypothetical protein 929001 5620115 BPUM_0849 Bacillus pumilus SAFR-032 hypothetical protein YP_001486093.1 928096 R 315750 CDS YP_001486094.1 157691632 5620116 complement(928985..930451) 1 NC_009848.1 hypothetical protein 930451 5620116 BPUM_0850 Bacillus pumilus SAFR-032 hypothetical protein YP_001486094.1 928985 R 315750 CDS YP_001486095.1 157691633 5620117 complement(930429..931196) 1 NC_009848.1 ABC transporter ATP-binding protein 931196 5620117 BPUM_0851 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001486095.1 930429 R 315750 CDS YP_001486096.1 157691634 5620118 complement(931291..931503) 1 NC_009848.1 hypothetical protein 931503 5620118 BPUM_0852 Bacillus pumilus SAFR-032 hypothetical protein YP_001486096.1 931291 R 315750 CDS YP_001486097.1 157691635 5620119 931870..932019 1 NC_009848.1 hypothetical protein 932019 5620119 BPUM_0853 Bacillus pumilus SAFR-032 hypothetical protein YP_001486097.1 931870 D 315750 CDS YP_001486098.1 157691636 5620120 932269..933564 1 NC_009848.1 catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase 933564 5620120 BPUM_0854 Bacillus pumilus SAFR-032 O-acetylhomoserine aminocarboxypropyltransferase YP_001486098.1 932269 D 315750 CDS YP_001486100.1 157691638 5620122 935465..937360 1 NC_009848.1 inner spore coat serine protein kinase 937360 prkA 5620122 prkA Bacillus pumilus SAFR-032 inner spore coat serine protein kinase YP_001486100.1 935465 D 315750 CDS YP_001486101.1 157691639 5620123 937501..938664 1 NC_009848.1 hypothetical protein 938664 yhbH 5620123 yhbH Bacillus pumilus SAFR-032 hypothetical protein YP_001486101.1 937501 D 315750 CDS YP_001486102.1 157691640 5620124 939028..939660 1 NC_009848.1 hypothetical protein 939660 yhbJ 5620124 yhbJ Bacillus pumilus SAFR-032 hypothetical protein YP_001486102.1 939028 D 315750 CDS YP_001486103.1 157691641 5620125 939700..941319 1 NC_009848.1 major facilitator superfamily transporter 941319 yhcA 5620125 yhcA Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001486103.1 939700 D 315750 CDS YP_001486104.1 157691642 5620126 941337..941861 1 NC_009848.1 hypothetical protein 941861 yhcB 5620126 yhcB Bacillus pumilus SAFR-032 hypothetical protein YP_001486104.1 941337 D 315750 CDS YP_001486105.1 157691643 5620127 941875..942234 1 NC_009848.1 hypothetical protein 942234 yhcC 5620127 yhcC Bacillus pumilus SAFR-032 hypothetical protein YP_001486105.1 941875 D 315750 CDS YP_001486106.1 157691644 5620128 complement(942349..942588) 1 NC_009848.1 cspA; major cold shock protein 942588 cspB 5620128 cspB Bacillus pumilus SAFR-032 major cold shock protein YP_001486106.1 942349 R 315750 CDS YP_001486107.1 157691645 5620129 complement(942767..943852) 1 NC_009848.1 ABC transporter ATP-binding protein 943852 yhcK 5620129 yhcK Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001486107.1 942767 R 315750 CDS YP_001486108.1 157691646 5620130 943933..944331 1 NC_009848.1 hypothetical protein 944331 5620130 BPUM_0864 Bacillus pumilus SAFR-032 hypothetical protein YP_001486108.1 943933 D 315750 CDS YP_001486109.1 157691647 5620131 complement(944366..944764) 1 NC_009848.1 spore protein YhcM 944764 yhcM 5620131 yhcM Bacillus pumilus SAFR-032 spore protein YhcM YP_001486109.1 944366 R 315750 CDS YP_001486110.1 157691648 5620132 944913..945422 1 NC_009848.1 hypothetical protein 945422 yhcN 5620132 yhcN Bacillus pumilus SAFR-032 hypothetical protein YP_001486110.1 944913 D 315750 CDS YP_001486111.1 157691649 5620133 945558..946454 1 NC_009848.1 hypothetical protein 946454 yhcP 5620133 yhcP Bacillus pumilus SAFR-032 hypothetical protein YP_001486111.1 945558 D 315750 CDS YP_001486112.1 157691650 5620134 complement(946480..947124) 1 NC_009848.1 possible spore coat protein; hypothetical protein 947124 yhcQ 5620134 yhcQ Bacillus pumilus SAFR-032 hypothetical protein YP_001486112.1 946480 R 315750 CDS YP_001486113.1 157691651 5620135 947269..950649 1 NC_009848.1 sensor histidine kinase 950649 5620135 BPUM_0869 Bacillus pumilus SAFR-032 sensor histidine kinase YP_001486113.1 947269 D 315750 CDS YP_001486114.1 157691652 5620136 950736..953627 1 NC_009848.1 endonuclease 953627 yhcR 5620136 yhcR Bacillus pumilus SAFR-032 endonuclease YP_001486114.1 950736 D 315750 CDS YP_001486115.1 157691653 5620137 953674..954240 1 NC_009848.1 C60A subfamily peptidase 954240 yhcS2 5620137 yhcS2 Bacillus pumilus SAFR-032 C60A subfamily peptidase YP_001486115.1 953674 D 315750 CDS YP_001486116.1 157691654 5620138 complement(954276..955184) 1 NC_009848.1 23S rRNA-specific pseudouridylate synthase YhcT; pseudouridylate synthase 955184 rluA1 5620138 rluA1 Bacillus pumilus SAFR-032 pseudouridylate synthase YP_001486116.1 954276 R 315750 CDS YP_001486117.1 157691655 5620139 955294..955644 1 NC_009848.1 hypothetical protein 955644 yhcU 5620139 yhcU Bacillus pumilus SAFR-032 hypothetical protein YP_001486117.1 955294 D 315750 CDS YP_001486118.1 157691656 5620140 complement(955717..955869) 1 NC_009848.1 hypothetical protein 955869 5620140 BPUM_0874 Bacillus pumilus SAFR-032 hypothetical protein YP_001486118.1 955717 R 315750 CDS YP_001486119.1 157691657 5620141 955953..956618 1 NC_009848.1 HAD family phosphatase 956618 yhcW 5620141 yhcW Bacillus pumilus SAFR-032 HAD family phosphatase YP_001486119.1 955953 D 315750 CDS YP_001486120.1 157691658 5620142 956634..958172 1 NC_009848.1 amidohydrolase 958172 yhcX 5620142 yhcX Bacillus pumilus SAFR-032 amidohydrolase YP_001486120.1 956634 D 315750 CDS YP_001486121.1 157691659 5620143 958172..958717 1 NC_009848.1 possible glyoxalase; hypothetical protein 958717 5620143 BPUM_0877 Bacillus pumilus SAFR-032 hypothetical protein YP_001486121.1 958172 D 315750 CDS YP_001486122.1 157691660 5620144 958805..959722 1 NC_009848.1 malonate efflux carrier 959722 5620144 BPUM_0878 Bacillus pumilus SAFR-032 malonate efflux carrier YP_001486122.1 958805 D 315750 CDS YP_001486123.1 157691661 5620145 959755..961347 1 NC_009848.1 possible transcriptional regulator; hypothetical protein 961347 5620145 BPUM_0879 Bacillus pumilus SAFR-032 hypothetical protein YP_001486123.1 959755 D 315750 CDS YP_001486124.1 157691662 5620146 961592..962932 1 NC_009848.1 aminotransferase 962932 bioA 5620146 bioA Bacillus pumilus SAFR-032 aminotransferase YP_001486124.1 961592 D 315750 CDS YP_001486125.1 157691663 5620147 963104..963661 1 NC_009848.1 glycerol uptake operon antiterminator regulatory protein; glycerol-3-phosphate responsive antiterminator 963661 glpP 5620147 glpP Bacillus pumilus SAFR-032 glycerol-3-phosphate responsive antiterminator YP_001486125.1 963104 D 315750 CDS YP_001486126.1 157691664 5620148 963875..964690 1 NC_009848.1 glycerol uptake facilitator protein; MIP family major intrinsic protein channel protein 964690 glpF 5620148 glpF Bacillus pumilus SAFR-032 MIP family major intrinsic protein channel protein YP_001486126.1 963875 D 315750 CDS YP_001486127.1 157691665 5620149 964706..966202 1 NC_009848.1 Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 966202 glpK 5620149 glpK Bacillus pumilus SAFR-032 glycerol kinase YP_001486127.1 964706 D 315750 CDS YP_001486128.1 157691666 5620150 966342..968003 1 NC_009848.1 glycerol-3-phosphate dehydrogenase 968003 glpD 5620150 glpD Bacillus pumilus SAFR-032 glycerol-3-phosphate dehydrogenase YP_001486128.1 966342 D 315750 CDS YP_001486129.1 157691667 5620151 968337..970082 1 NC_009848.1 YhxB; phosphoglucomutase 970082 5620151 BPUM_0885 Bacillus pumilus SAFR-032 phosphoglucomutase YP_001486129.1 968337 D 315750 CDS YP_001486130.1 157691668 5620152 970216..971379 1 NC_009848.1 possible two-component regulatory protein; spore sensor histidine kinase 971379 yhcY 5620152 yhcY Bacillus pumilus SAFR-032 spore sensor histidine kinase YP_001486130.1 970216 D 315750 CDS YP_001486131.1 157691669 5620153 971376..972026 1 NC_009848.1 transcriptional regulator 972026 yhcZ 5620153 yhcZ Bacillus pumilus SAFR-032 transcriptional regulator YP_001486131.1 971376 D 315750 CDS YP_001486132.1 157691670 5620154 complement(972115..972279) 1 NC_009848.1 hypothetical protein 972279 5620154 BPUM_0888 Bacillus pumilus SAFR-032 hypothetical protein YP_001486132.1 972115 R 315750 CDS YP_001486133.1 157691671 5620155 972296..973162 1 NC_009848.1 possible GNAT family acetyltransferase; hypothetical protein 973162 5620155 BPUM_0889 Bacillus pumilus SAFR-032 hypothetical protein YP_001486133.1 972296 D 315750 CDS YP_001486134.1 157691672 5620156 complement(973198..973479) 1 NC_009848.1 hypothetical protein 973479 yhdB 5620156 yhdB Bacillus pumilus SAFR-032 hypothetical protein YP_001486134.1 973198 R 315750 CDS YP_001486135.1 157691673 5620157 973575..973958 1 NC_009848.1 hypothetical protein 973958 yhdC 5620157 yhdC Bacillus pumilus SAFR-032 hypothetical protein YP_001486135.1 973575 D 315750 CDS YP_001486136.1 157691674 5620158 complement(974102..975577) 1 NC_009848.1 catalase KatX2 975577 katX2 5620158 katX2 Bacillus pumilus SAFR-032 catalase KatX2 YP_001486136.1 974102 R 315750 CDS YP_001486137.1 157691675 5620159 complement(975738..976169) 1 NC_009848.1 transcriptional regulator 976169 yhdE 5620159 yhdE Bacillus pumilus SAFR-032 transcriptional regulator YP_001486137.1 975738 R 315750 CDS YP_001486138.1 157691676 5620160 976353..977552 1 NC_009848.1 nitric oxide dioxygenase 977552 hmp 5620160 hmp Bacillus pumilus SAFR-032 nitric oxide dioxygenase YP_001486138.1 976353 D 315750 CDS YP_001486139.1 157691677 5620161 977620..979044 1 NC_009848.1 stage V sporulation protein R 979044 spoVR 5620161 spoVR Bacillus pumilus SAFR-032 stage V sporulation protein R YP_001486139.1 977620 D 315750 CDS YP_001486140.1 157691678 5620162 complement(979087..980451) 1 NC_009848.1 phoAIV; alkaline phosphatase A 980451 phoA 5620162 phoA Bacillus pumilus SAFR-032 alkaline phosphatase A YP_001486140.1 979087 R 315750 CDS YP_001486141.1 157691679 5620163 980806..981639 1 NC_009848.1 C40 family murein endopeptidase; gamma-D-glutamate-meso-diaminopimelate muropeptidase CwlF; PapQ phosphatase-associated protein; vegetative cell wall hydrolase 981639 lytE 5620163 lytE Bacillus pumilus SAFR-032 vegetative cell wall hydrolase YP_001486141.1 980806 D 315750 CDS YP_001486142.1 157691680 5620164 981746..982069 1 NC_009848.1 transposase 982069 orfX 5620164 orfX Bacillus pumilus SAFR-032 transposase YP_001486142.1 981746 D 315750 CDS YP_001486143.1 157691681 5620165 982117..982926 1 NC_009848.1 possible transposase; integrase 982926 5620165 BPUM_0899 Bacillus pumilus SAFR-032 integrase YP_001486143.1 982117 D 315750 CDS YP_001486144.1 157691682 5620166 complement(983079..983369) 1 NC_009848.1 possible regulator of SigM operon; hypothetical protein 983369 yhdK 5620166 yhdK Bacillus pumilus SAFR-032 hypothetical protein YP_001486144.1 983079 R 315750 CDS YP_001486145.1 157691683 5620167 complement(983357..984418) 1 NC_009848.1 possible regulator of SigM operon; hypothetical protein 984418 yhdL 5620167 yhdL Bacillus pumilus SAFR-032 hypothetical protein YP_001486145.1 983357 R 315750 CDS YP_001486146.1 157691684 5620168 complement(984408..984899) 1 NC_009848.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in B. subtilis this protein is activated in response to cell wall antibiotics, ethanol, heat, acid, and superoxide stress; RNA polymerase sigma factor SigM 984899 sigM 5620168 sigM Bacillus pumilus SAFR-032 RNA polymerase sigma factor SigM YP_001486146.1 984408 R 315750 CDS YP_001486147.1 157691685 5620169 985271..985873 1 NC_009848.1 YhdO; 1-acylglycerol-3-phosphate O-acyltransferase 985873 plsC 5620169 plsC Bacillus pumilus SAFR-032 1-acylglycerol-3-phosphate O-acyltransferase YP_001486147.1 985271 D 315750 CDS YP_001486148.1 157691686 5620170 complement(985913..987244) 1 NC_009848.1 TlyC family hemolysin 987244 yhdP 5620170 yhdP Bacillus pumilus SAFR-032 TlyC family hemolysin YP_001486148.1 985913 R 315750 CDS YP_001486149.1 157691687 5620171 complement(987303..987743) 1 NC_009848.1 MerR family transcriptional regulator 987743 cueR 5620171 cueR Bacillus pumilus SAFR-032 MerR family transcriptional regulator YP_001486149.1 987303 R 315750 CDS YP_001486150.1 157691688 5620172 988078..989460 1 NC_009848.1 TlyC family hemolysin 989460 yhdT 5620172 yhdT Bacillus pumilus SAFR-032 TlyC family hemolysin YP_001486150.1 988078 D 315750 CDS YP_001486151.1 157691689 5620173 989550..989942 1 NC_009848.1 hypothetical protein 989942 5620173 BPUM_0907 Bacillus pumilus SAFR-032 hypothetical protein YP_001486151.1 989550 D 315750 CDS YP_001486152.1 157691690 5620174 complement(989939..990304) 1 NC_009848.1 YhdU; camphor resistance protein CrcB1 990304 ccrB1 5620174 ccrB1 Bacillus pumilus SAFR-032 camphor resistance protein CrcB1 YP_001486152.1 989939 R 315750 CDS YP_001486153.1 157691691 5620175 complement(990323..990700) 1 NC_009848.1 YhdV; camphor resistance protein CrcB2 990700 ccrB2 5620175 ccrB2 Bacillus pumilus SAFR-032 camphor resistance protein CrcB2 YP_001486153.1 990323 R 315750 CDS YP_001486154.1 157691692 5620176 complement(990706..991422) 1 NC_009848.1 YhdW; glycerophosphodiester phosphodiesterase 991422 ugpQ 5620176 ugpQ Bacillus pumilus SAFR-032 glycerophosphodiester phosphodiesterase YP_001486154.1 990706 R 315750 CDS YP_001486155.1 157691693 5620177 complement(991456..991653) 1 NC_009848.1 hypothetical protein 991653 5620177 BPUM_0911 Bacillus pumilus SAFR-032 hypothetical protein YP_001486155.1 991456 R 315750 CDS YP_001486156.1 157691694 5620178 991704..991805 1 NC_009848.1 hypothetical protein 991805 yhdX 5620178 yhdX Bacillus pumilus SAFR-032 hypothetical protein YP_001486156.1 991704 D 315750 CDS YP_001486157.1 157691695 5620179 991970..993058 1 NC_009848.1 MscS family small conductance mechanosenstive ion channel protein 993058 yhdY 5620179 yhdY Bacillus pumilus SAFR-032 MscS family small conductance mechanosenstive ion channel protein YP_001486157.1 991970 D 315750 CDS YP_001486158.1 157691696 5620180 993073..993819 1 NC_009848.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 993819 yhdZ 5620180 yhdZ Bacillus pumilus SAFR-032 NAD-dependent deacetylase YP_001486158.1 993073 D 315750 CDS YP_001486159.1 157691697 5620181 complement(993860..994714) 1 NC_009848.1 polysaccharide deacetylase 994714 yheN1 5620181 yheN1 Bacillus pumilus SAFR-032 polysaccharide deacetylase YP_001486159.1 993860 R 315750 CDS YP_001486160.1 157691698 5620182 995011..995868 1 NC_009848.1 YheM; D-amino-acid transaminase 995868 dat 5620182 dat Bacillus pumilus SAFR-032 D-amino-acid transaminase YP_001486160.1 995011 D 315750 CDS YP_001486161.1 157691699 5620183 complement(995915..996439) 1 NC_009848.1 YheK; universal stress protein NhaX 996439 nhaX 5620183 nhaX Bacillus pumilus SAFR-032 universal stress protein NhaX YP_001486161.1 995915 R 315750 CDS YP_001486162.1 157691700 5620184 996983..998740 1 NC_009848.1 ABC transporter ATP-binding protein 998740 yheI 5620184 yheI Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001486162.1 996983 D 315750 CDS YP_001486163.1 157691701 5620185 998737..1000749 1 NC_009848.1 ABC transporter ATP-binding protein 1000749 yheH 5620185 yheH Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001486163.1 998737 D 315750 CDS YP_001486164.1 157691702 5620186 complement(1000855..1001472) 1 NC_009848.1 NADH-flavin reductase 1001472 yheG 5620186 yheG Bacillus pumilus SAFR-032 NADH-flavin reductase YP_001486164.1 1000855 R 315750 CDS YP_001486165.1 157691703 5620187 complement(1001759..1001962) 1 NC_009848.1 small acid-soluble spore protein B 1001962 sspB 5620187 sspB Bacillus pumilus SAFR-032 small acid-soluble spore protein B YP_001486165.1 1001759 R 315750 CDS YP_001486166.1 157691704 5620188 complement(1002195..1003301) 1 NC_009848.1 sugar ABC transporter ATP-binding protein 1003301 msmX 5620188 msmX Bacillus pumilus SAFR-032 sugar ABC transporter ATP-binding protein YP_001486166.1 1002195 R 315750 CDS YP_001486167.1 157691705 5620189 complement(1003441..1004316) 1 NC_009848.1 transcriptional regulator 1004316 5620189 BPUM_0923 Bacillus pumilus SAFR-032 transcriptional regulator YP_001486167.1 1003441 R 315750 CDS YP_001486168.1 157691706 5620190 complement(1004337..1004546) 1 NC_009848.1 hypothetical protein 1004546 5620190 BPUM_0924 Bacillus pumilus SAFR-032 hypothetical protein YP_001486168.1 1004337 R 315750 CDS YP_001486169.1 157691707 5620191 complement(1004700..1006058) 1 NC_009848.1 hypothetical protein 1006058 yheD 5620191 yheD Bacillus pumilus SAFR-032 hypothetical protein YP_001486169.1 1004700 R 315750 CDS YP_001486170.1 157691708 5620192 complement(1006015..1007118) 1 NC_009848.1 spore protein YheC 1007118 yheC 5620192 yheC Bacillus pumilus SAFR-032 spore protein YheC YP_001486170.1 1006015 R 315750 CDS YP_001486171.1 157691709 5620193 1007333..1008466 1 NC_009848.1 hypothetical protein 1008466 yheB 5620193 yheB Bacillus pumilus SAFR-032 hypothetical protein YP_001486171.1 1007333 D 315750 CDS YP_001486172.1 157691710 5620194 1008588..1008944 1 NC_009848.1 hypothetical protein 1008944 yheA 5620194 yheA Bacillus pumilus SAFR-032 hypothetical protein YP_001486172.1 1008588 D 315750 CDS YP_001486173.1 157691711 5620195 1009393..1010259 1 NC_009848.1 HAD family phosphatase 1010259 yhaX 5620195 yhaX Bacillus pumilus SAFR-032 HAD family phosphatase YP_001486173.1 1009393 D 315750 CDS YP_001486174.1 157691712 5620196 1010373..1011872 1 NC_009848.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1011872 hemZ 5620196 hemZ Bacillus pumilus SAFR-032 coproporphyrinogen III oxidase YP_001486174.1 1010373 D 315750 CDS YP_001486175.1 157691713 5620197 1011948..1013222 1 NC_009848.1 lysine/ornithine N-monooxygenase 1013222 5620197 BPUM_0931 Bacillus pumilus SAFR-032 lysine/ornithine N-monooxygenase YP_001486175.1 1011948 D 315750 CDS YP_001486176.1 157691714 5620198 1013389..1014159 1 NC_009848.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1014159 5620198 BPUM_0932 Bacillus pumilus SAFR-032 enoyl-CoA hydratase YP_001486176.1 1013389 D 315750 CDS YP_001486177.1 157691715 5620199 complement(1014386..1014574) 1 NC_009848.1 hypothetical protein 1014574 5620199 BPUM_0933 Bacillus pumilus SAFR-032 hypothetical protein YP_001486177.1 1014386 R 315750 CDS YP_001486178.1 157691716 5620200 1014747..1015961 1 NC_009848.1 hypothetical protein 1015961 yhaO 5620200 yhaO Bacillus pumilus SAFR-032 hypothetical protein YP_001486178.1 1014747 D 315750 CDS YP_001486179.1 157691717 5620201 1015978..1018767 1 NC_009848.1 hypothetical protein 1018767 yhaN 5620201 yhaN Bacillus pumilus SAFR-032 hypothetical protein YP_001486179.1 1015978 D 315750 CDS YP_001486180.1 157691718 5620202 1018830..1019774 1 NC_009848.1 catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates; 3'-5' exoribonuclease YhaM 1019774 yhaM 5620202 yhaM Bacillus pumilus SAFR-032 3'-5' exoribonuclease YhaM YP_001486180.1 1018830 D 315750 CDS YP_001486181.1 157691719 5620203 1019891..1020121 1 NC_009848.1 hypothetical protein 1020121 yhaL 5620203 yhaL Bacillus pumilus SAFR-032 hypothetical protein YP_001486181.1 1019891 D 315750 CDS YP_001486182.1 157691720 5620204 complement(1020175..1021053) 1 NC_009848.1 peptidylprolyl isomerase PrsA 1021053 prsA 5620204 prsA Bacillus pumilus SAFR-032 peptidylprolyl isomerase PrsA YP_001486182.1 1020175 R 315750 CDS YP_001486183.1 157691721 5620205 1021187..1021300 1 NC_009848.1 hypothetical protein 1021300 5620205 BPUM_0939 Bacillus pumilus SAFR-032 hypothetical protein YP_001486183.1 1021187 D 315750 CDS YP_001486185.1 157691723 5620207 complement(1021588..1021734) 1 NC_009848.1 hypothetical protein 1021734 5620207 BPUM_0941 Bacillus pumilus SAFR-032 hypothetical protein YP_001486185.1 1021588 R 315750 CDS YP_001486186.1 157691724 5620208 complement(1021856..1022374) 1 NC_009848.1 hypothetical protein 1022374 5620208 BPUM_0942 Bacillus pumilus SAFR-032 hypothetical protein YP_001486186.1 1021856 R 315750 CDS YP_001486187.1 157691725 5620209 1022608..1022952 1 NC_009848.1 hypothetical protein 1022952 yhaI 5620209 yhaI Bacillus pumilus SAFR-032 hypothetical protein YP_001486187.1 1022608 D 315750 CDS YP_001486188.1 157691726 5620210 complement(1022930..1023550) 1 NC_009848.1 hpr; ScoC; MarR family; protease production regulatory protein; transcriptional regulator Hpr 1023550 hpr 5620210 hpr Bacillus pumilus SAFR-032 transcriptional regulator Hpr YP_001486188.1 1022930 R 315750 CDS YP_001486189.1 157691727 5620211 complement(1023738..1024094) 1 NC_009848.1 hypothetical protein 1024094 yhaH 5620211 yhaH Bacillus pumilus SAFR-032 hypothetical protein YP_001486189.1 1023738 R 315750 CDS YP_001486190.1 157691728 5620212 1024223..1024414 1 NC_009848.1 hypothetical protein 1024414 5620212 BPUM_0946 Bacillus pumilus SAFR-032 hypothetical protein YP_001486190.1 1024223 D 315750 CDS YP_001486191.1 157691729 5620213 complement(1024466..1024984) 1 NC_009848.1 hypothetical protein 1024984 yhaG 5620213 yhaG Bacillus pumilus SAFR-032 hypothetical protein YP_001486191.1 1024466 R 315750 CDS YP_001486192.1 157691730 5620214 complement(1025110..1026189) 1 NC_009848.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1026189 serC 5620214 serC Bacillus pumilus SAFR-032 phosphoserine aminotransferase YP_001486192.1 1025110 R 315750 CDS YP_001486193.1 157691731 5620215 complement(1026349..1026777) 1 NC_009848.1 YhaE; histidine triad (HIT) family hydrolase 1026777 hit 5620215 hit Bacillus pumilus SAFR-032 histidine triad (HIT) family hydrolase YP_001486193.1 1026349 R 315750 CDS YP_001486194.1 157691732 5620216 1026781..1026933 1 NC_009848.1 hypothetical protein 1026933 5620216 BPUM_0950 Bacillus pumilus SAFR-032 hypothetical protein YP_001486194.1 1026781 D 315750 CDS YP_001486195.1 157691733 5620217 1027265..1028005 1 NC_009848.1 ABC transporter ATP-binding protein 1028005 ecsA 5620217 ecsA Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001486195.1 1027265 D 315750 CDS YP_001486196.1 157691734 5620218 1027998..1029218 1 NC_009848.1 ABC transporter ATP-binding protein 1029218 ecsB 5620218 ecsB Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001486196.1 1027998 D 315750 CDS YP_001486197.1 157691735 5620219 1029272..1029979 1 NC_009848.1 ABC transporter ATP-binding protein 1029979 ecsC 5620219 ecsC Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001486197.1 1029272 D 315750 CDS YP_001486198.1 157691736 5620220 complement(1030009..1031196) 1 NC_009848.1 M20D subfamily metallopeptidase YhaA; aminoacylase 1031196 amaA 5620220 amaA Bacillus pumilus SAFR-032 aminoacylase YP_001486198.1 1030009 R 315750 CDS YP_001486199.1 157691737 5620221 1031235..1031630 1 NC_009848.1 hypothetical protein 1031630 5620221 BPUM_0955 Bacillus pumilus SAFR-032 hypothetical protein YP_001486199.1 1031235 D 315750 CDS YP_001486200.1 157691738 5620222 complement(1031891..1032376) 1 NC_009848.1 hypothetical protein 1032376 5620222 BPUM_0956 Bacillus pumilus SAFR-032 hypothetical protein YP_001486200.1 1031891 R 315750 CDS YP_001486201.1 157691739 5620223 1032504..1034639 1 NC_009848.1 penicillin-binding protein 2C 1034639 pbpF 5620223 pbpF Bacillus pumilus SAFR-032 penicillin-binding protein 2C YP_001486201.1 1032504 D 315750 CDS YP_001486202.1 157691740 5620224 1034764..1035822 1 NC_009848.1 catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 1035822 hemE 5620224 hemE Bacillus pumilus SAFR-032 uroporphyrinogen decarboxylase YP_001486202.1 1034764 D 315750 CDS YP_001486203.1 157691741 5620225 1035855..1036793 1 NC_009848.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1036793 hemH 5620225 hemH Bacillus pumilus SAFR-032 ferrochelatase YP_001486203.1 1035855 D 315750 CDS YP_001486204.1 157691742 5620226 1036816..1038228 1 NC_009848.1 catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase 1038228 hemY 5620226 hemY Bacillus pumilus SAFR-032 protoporphyrinogen oxidase YP_001486204.1 1036816 D 315750 CDS YP_001486205.1 157691743 5620227 1038403..1038981 1 NC_009848.1 TetR/AcrR family transcriptional regulator 1038981 yhgD 5620227 yhgD Bacillus pumilus SAFR-032 TetR/AcrR family transcriptional regulator YP_001486205.1 1038403 D 315750 CDS YP_001486206.1 157691744 5620228 1039046..1041355 1 NC_009848.1 possible phage infection protein; hypothetical protein 1041355 yhgE 5620228 yhgE Bacillus pumilus SAFR-032 hypothetical protein YP_001486206.1 1039046 D 315750 CDS YP_001486207.1 157691745 5620229 1041499..1042548 1 NC_009848.1 spore protease YhfE; M42 family peptidase 1042548 yhfE 5620229 yhfE Bacillus pumilus SAFR-032 M42 family peptidase YP_001486207.1 1041499 D 315750 CDS YP_001486208.1 157691746 5620230 1042605..1042787 1 NC_009848.1 hypothetical protein 1042787 5620230 BPUM_0964 Bacillus pumilus SAFR-032 hypothetical protein YP_001486208.1 1042605 D 315750 CDS YP_001486209.1 157691747 5620231 complement(1042784..1044073) 1 NC_009848.1 DAACS family dicarboxylate/amino acid:cation symporter 1044073 gltT 5620231 gltT Bacillus pumilus SAFR-032 DAACS family dicarboxylate/amino acid:cation symporter YP_001486209.1 1042784 R 315750 CDS YP_001486210.1 157691748 5620232 complement(1044413..1044550) 1 NC_009848.1 hypothetical protein 1044550 yhfH 5620232 yhfH Bacillus pumilus SAFR-032 hypothetical protein YP_001486210.1 1044413 R 315750 CDS YP_001486211.1 157691749 5620233 1044707..1045450 1 NC_009848.1 metal-dependent hydrolase 1045450 yhfI 5620233 yhfI Bacillus pumilus SAFR-032 metal-dependent hydrolase YP_001486211.1 1044707 D 315750 CDS YP_001486212.1 157691750 5620234 1045453..1046442 1 NC_009848.1 LplA; lipoate--protein ligase 1046442 yhfJ 5620234 yhfJ Bacillus pumilus SAFR-032 lipoate--protein ligase YP_001486212.1 1045453 D 315750 CDS YP_001486213.1 157691751 5620235 1046615..1048168 1 NC_009848.1 activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1048168 lcfA1 5620235 lcfA1 Bacillus pumilus SAFR-032 long-chain-fatty-acid--CoA ligase YP_001486213.1 1046615 D 315750 CDS YP_001486214.1 157691752 5620236 complement(1048249..1048656) 1 NC_009848.1 hypothetical protein 1048656 yhfM 5620236 yhfM Bacillus pumilus SAFR-032 hypothetical protein YP_001486214.1 1048249 R 315750 CDS YP_001486215.1 157691753 5620237 1048834..1050114 1 NC_009848.1 possible metalloprotease; M48 family peptidase 1050114 yhfN 5620237 yhfN Bacillus pumilus SAFR-032 M48 family peptidase YP_001486215.1 1048834 D 315750 CDS YP_001486216.1 157691754 5620238 complement(1050155..1051300) 1 NC_009848.1 S8 family serine protease; subtilisin 1051300 aprE1 5620238 aprE1 Bacillus pumilus SAFR-032 subtilisin YP_001486216.1 1050155 R 315750 CDS YP_001486217.1 157691755 5620239 complement(1051689..1052273) 1 NC_009848.1 phosphoglycerate mutase family protein 1052273 yhfR 5620239 yhfR Bacillus pumilus SAFR-032 phosphoglycerate mutase family protein YP_001486217.1 1051689 R 315750 CDS YP_001486218.1 157691756 5620240 complement(1052335..1053630) 1 NC_009848.1 haem-based aerotactic transducer HemAT; methyl-accepting chemotaxis protein 1053630 5620240 BPUM_0974 Bacillus pumilus SAFR-032 methyl-accepting chemotaxis protein YP_001486218.1 1052335 R 315750 CDS YP_001486219.1 157691757 5620241 complement(1053722..1055254) 1 NC_009848.1 dehydrogenase 1055254 yhfW 5620241 yhfW Bacillus pumilus SAFR-032 dehydrogenase YP_001486219.1 1053722 R 315750 CDS YP_001486220.1 157691758 5620242 1055400..1056260 1 NC_009848.1 alcohol dehydrogenase like protein; spore short-chain dehydrogenase 1056260 yhxC 5620242 yhxC Bacillus pumilus SAFR-032 spore short-chain dehydrogenase YP_001486220.1 1055400 D 315750 CDS YP_001486221.1 157691759 5620243 complement(1056323..1056553) 1 NC_009848.1 hypothetical protein 1056553 yhzC 5620243 yhzC Bacillus pumilus SAFR-032 hypothetical protein YP_001486221.1 1056323 R 315750 CDS YP_001486222.1 157691760 5620244 1056843..1057421 1 NC_009848.1 competence protein K; competence transcription factor CTF 1057421 comK 5620244 comK Bacillus pumilus SAFR-032 competence transcription factor CTF YP_001486222.1 1056843 D 315750 CDS YP_001486223.1 157691761 5620245 1057581..1058687 1 NC_009848.1 possible amino acid aldolase/racemase YncD; alanine racemase 1058687 5620245 BPUM_0979 Bacillus pumilus SAFR-032 alanine racemase YP_001486223.1 1057581 D 315750 CDS YP_001486224.1 157691762 5620246 1059000..1059482 1 NC_009848.1 hypothetical protein 1059482 5620246 BPUM_0980 Bacillus pumilus SAFR-032 hypothetical protein YP_001486224.1 1059000 D 315750 CDS YP_001486225.1 157691763 5620247 complement(1059513..1060952) 1 NC_009848.1 GntR family transcriptional regulator 1060952 ydeL 5620247 ydeL Bacillus pumilus SAFR-032 GntR family transcriptional regulator YP_001486225.1 1059513 R 315750 CDS YP_001486226.1 157691764 5620248 1061070..1062266 1 NC_009848.1 possible multidrug resistance efflux protein; major facilitator superfamily transporter 1062266 5620248 BPUM_0982 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001486226.1 1061070 D 315750 CDS YP_001486227.1 157691765 5620249 1062332..1062607 1 NC_009848.1 barstar-like protein ribonuclease (barnase) inhibitor 1062607 yrdF 5620249 yrdF Bacillus pumilus SAFR-032 barstar-like protein ribonuclease (barnase) inhibitor YP_001486227.1 1062332 D 315750 CDS YP_001486228.1 157691766 5620250 1062773..1063723 1 NC_009848.1 ABC transporter ATP-binding protein 1063723 yclN 5620250 yclN Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001486228.1 1062773 D 315750 CDS YP_001486229.1 157691767 5620251 1063716..1064666 1 NC_009848.1 ABC transporter ATP-binding protein 1064666 yclO 5620251 yclO Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001486229.1 1063716 D 315750 CDS YP_001486230.1 157691768 5620252 1064657..1065415 1 NC_009848.1 ABC transporter ATP-binding protein 1065415 yclP 5620252 yclP Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001486230.1 1064657 D 315750 CDS YP_001486231.1 157691769 5620253 1065438..1066382 1 NC_009848.1 ABC transporter ATP-binding protein 1066382 yclQ 5620253 yclQ Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001486231.1 1065438 D 315750 CDS YP_001486232.1 157691770 5620254 1066523..1067491 1 NC_009848.1 LytR family transcriptional regulator 1067491 5620254 BPUM_0988 Bacillus pumilus SAFR-032 LytR family transcriptional regulator YP_001486232.1 1066523 D 315750 CDS YP_001486233.1 157691771 5620255 complement(1067560..1067928) 1 NC_009848.1 hypothetical protein 1067928 5620255 BPUM_0989 Bacillus pumilus SAFR-032 hypothetical protein YP_001486233.1 1067560 R 315750 CDS YP_001486234.1 157691772 5620256 1068075..1068692 1 NC_009848.1 hypothetical protein 1068692 yhjE 5620256 yhjE Bacillus pumilus SAFR-032 hypothetical protein YP_001486234.1 1068075 D 315750 CDS YP_001486235.1 157691773 5620257 complement(1069240..1070385) 1 NC_009848.1 ammonia monooxygenase 1070385 yhjN 5620257 yhjN Bacillus pumilus SAFR-032 ammonia monooxygenase YP_001486235.1 1069240 R 315750 CDS YP_001486236.1 157691774 5620258 1071067..1071906 1 NC_009848.1 M56 family unassigned peptidase 1071906 5620258 BPUM_0992 Bacillus pumilus SAFR-032 M56 family unassigned peptidase YP_001486236.1 1071067 D 315750 CDS YP_001486237.1 157691775 5620259 1073170..1076691 1 NC_009848.1 recombination initiation protein AddB; ATP-dependent deoxyribonuclease subunit B 1076691 addB 5620259 addB Bacillus pumilus SAFR-032 ATP-dependent deoxyribonuclease subunit B YP_001486237.1 1073170 D 315750 CDS YP_001486238.1 157691776 5620260 1076669..1080373 1 NC_009848.1 recombination initiation protein AddA; ATP-dependent deoxyribonuclease subunit A 1080373 addA 5620260 addA Bacillus pumilus SAFR-032 ATP-dependent deoxyribonuclease subunit A YP_001486238.1 1076669 D 315750 CDS YP_001486239.1 157691777 5620261 1080400..1081575 1 NC_009848.1 DNA repair exonuclease subunit D 1081575 sbcD 5620261 sbcD Bacillus pumilus SAFR-032 DNA repair exonuclease subunit D YP_001486239.1 1080400 D 315750 CDS YP_001486240.1 157691778 5620262 1081572..1084967 1 NC_009848.1 YirY; DNA repair exonuclease subunit C 1084967 sbcC 5620262 sbcC Bacillus pumilus SAFR-032 DNA repair exonuclease subunit C YP_001486240.1 1081572 D 315750 CDS YP_001486241.1 157691779 5620263 1084987..1085286 1 NC_009848.1 hypothetical protein 1085286 yisB 5620263 yisB Bacillus pumilus SAFR-032 hypothetical protein YP_001486241.1 1084987 D 315750 CDS YP_001486242.1 157691780 5620264 complement(1085333..1085560) 1 NC_009848.1 spore germination protein PF 1085560 gerPF 5620264 gerPF Bacillus pumilus SAFR-032 spore germination protein PF YP_001486242.1 1085333 R 315750 CDS YP_001486243.1 157691781 5620265 complement(1085574..1086005) 1 NC_009848.1 spore germination protein PE 1086005 gerPE 5620265 gerPE Bacillus pumilus SAFR-032 spore germination protein PE YP_001486243.1 1085574 R 315750 CDS YP_001486244.1 157691782 5620266 complement(1086005..1086181) 1 NC_009848.1 spore germination protein PD 1086181 gerPD 5620266 gerPD Bacillus pumilus SAFR-032 spore germination protein PD YP_001486244.1 1086005 R 315750 CDS YP_001486245.1 157691783 5620267 complement(1086178..1086798) 1 NC_009848.1 spore germination protein PC 1086798 gerPC 5620267 gerPC Bacillus pumilus SAFR-032 spore germination protein PC YP_001486245.1 1086178 R 315750 CDS YP_001486246.1 157691784 5620268 complement(1086824..1087057) 1 NC_009848.1 spore germination protein PB 1087057 gerPB 5620268 gerPB Bacillus pumilus SAFR-032 spore germination protein PB YP_001486246.1 1086824 R 315750 CDS YP_001486247.1 157691785 5620269 complement(1087072..1087293) 1 NC_009848.1 spore germination protein PA 1087293 gerPA 5620269 gerPA Bacillus pumilus SAFR-032 spore germination protein PA YP_001486247.1 1087072 R 315750 CDS YP_001486248.1 157691786 5620270 complement(1087421..1087582) 1 NC_009848.1 hypothetical protein 1087582 yisI 5620270 yisI Bacillus pumilus SAFR-032 hypothetical protein YP_001486248.1 1087421 R 315750 CDS YP_001486249.1 157691787 5620271 complement(1087705..1088799) 1 NC_009848.1 spore coat assembly protein YwrH; inner spore coat protein H 1088799 cotH 5620271 cotH Bacillus pumilus SAFR-032 inner spore coat protein H YP_001486249.1 1087705 R 315750 CDS YP_001486250.1 157691788 5620272 complement(1088874..1089590) 1 NC_009848.1 possible spore coat protein G; hypothetical protein 1089590 5620272 BPUM_1006 Bacillus pumilus SAFR-032 hypothetical protein YP_001486250.1 1088874 R 315750 CDS YP_001486251.1 157691789 5620273 1089713..1090618 1 NC_009848.1 fumarylacetoacetate hydrolase 1090618 yisK 5620273 yisK Bacillus pumilus SAFR-032 fumarylacetoacetate hydrolase YP_001486251.1 1089713 D 315750 CDS YP_001486252.1 157691790 5620274 1090711..1091079 1 NC_009848.1 hypothetical protein 1091079 yisL 5620274 yisL Bacillus pumilus SAFR-032 hypothetical protein YP_001486252.1 1090711 D 315750 CDS YP_001486253.1 157691791 5620275 complement(1091118..1091645) 1 NC_009848.1 hypothetical protein 1091645 yisN 5620275 yisN Bacillus pumilus SAFR-032 hypothetical protein YP_001486253.1 1091118 R 315750 CDS YP_001486254.1 157691792 5620276 1091795..1093642 1 NC_009848.1 asparagine synthase 1093642 asnO 5620276 asnO Bacillus pumilus SAFR-032 asparagine synthase YP_001486254.1 1091795 D 315750 CDS YP_001486255.1 157691793 5620277 1093790..1095307 1 NC_009848.1 phytoene dehydrogenase 1095307 5620277 BPUM_1011 Bacillus pumilus SAFR-032 phytoene dehydrogenase YP_001486255.1 1093790 D 315750 CDS YP_001486256.1 157691794 5620278 1096772..1097611 1 NC_009848.1 phytoene synthase 1097611 yisP 5620278 yisP Bacillus pumilus SAFR-032 phytoene synthase YP_001486256.1 1096772 D 315750 CDS YP_001486257.1 157691795 5620279 complement(1097637..1099013) 1 NC_009848.1 MATE family multi antimicrobial extrusion protein 1099013 yisQ 5620279 yisQ Bacillus pumilus SAFR-032 MATE family multi antimicrobial extrusion protein YP_001486257.1 1097637 R 315750 CDS YP_001486258.1 157691796 5620280 1099127..1099993 1 NC_009848.1 transcriptional regulator 1099993 yisR 5620280 yisR Bacillus pumilus SAFR-032 transcriptional regulator YP_001486258.1 1099127 D 315750 CDS YP_001486259.1 157691797 5620281 1100008..1100565 1 NC_009848.1 acetyltransferase 1100565 5620281 BPUM_1015 Bacillus pumilus SAFR-032 acetyltransferase YP_001486259.1 1100008 D 315750 CDS YP_001486260.1 157691798 5620282 1100629..1100904 1 NC_009848.1 hypothetical protein 1100904 5620282 BPUM_1016 Bacillus pumilus SAFR-032 hypothetical protein YP_001486260.1 1100629 D 315750 CDS YP_001486261.1 157691799 5620283 1100933..1101196 1 NC_009848.1 hypothetical protein 1101196 5620283 BPUM_1017 Bacillus pumilus SAFR-032 hypothetical protein YP_001486261.1 1100933 D 315750 CDS YP_001486262.1 157691800 5620284 complement(1101178..1101726) 1 NC_009848.1 serine O-acetyltransferase 1101726 5620284 BPUM_1018 Bacillus pumilus SAFR-032 serine O-acetyltransferase YP_001486262.1 1101178 R 315750 CDS YP_001486263.1 157691801 5620285 1102113..1103459 1 NC_009848.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 1103459 5620285 BPUM_1019 Bacillus pumilus SAFR-032 diaminobutyrate--2-oxoglutarate aminotransferase YP_001486263.1 1102113 D 315750 CDS YP_001486264.1 157691802 5620286 1103446..1104942 1 NC_009848.1 diaminobutyrate decarboxylase 1104942 5620286 BPUM_1020 Bacillus pumilus SAFR-032 diaminobutyrate decarboxylase YP_001486264.1 1103446 D 315750 CDS YP_001486265.1 157691803 5620287 1104939..1106720 1 NC_009848.1 IucA/IucC family siderophore biosynthesis protein 1106720 5620287 BPUM_1021 Bacillus pumilus SAFR-032 IucA/IucC family siderophore biosynthesis protein YP_001486265.1 1104939 D 315750 CDS YP_001486266.1 157691804 5620288 1106717..1107271 1 NC_009848.1 possible acetyltransferase; siderophore biosynthesis protein 1107271 5620288 BPUM_1022 Bacillus pumilus SAFR-032 siderophore biosynthesis protein YP_001486266.1 1106717 D 315750 CDS YP_001486267.1 157691805 5620289 1107246..1108595 1 NC_009848.1 possible siderophore biosynthesis protein; L-lysine 6-monooxygenase 1108595 iucD 5620289 iucD Bacillus pumilus SAFR-032 L-lysine 6-monooxygenase YP_001486267.1 1107246 D 315750 CDS YP_001486268.1 157691806 5620290 1108609..1110423 1 NC_009848.1 IucA/IucC family siderophore biosynthesis protein 1110423 5620290 BPUM_1024 Bacillus pumilus SAFR-032 IucA/IucC family siderophore biosynthesis protein YP_001486268.1 1108609 D 315750 CDS YP_001486269.1 157691807 5620291 complement(1110466..1111323) 1 NC_009848.1 GNAT family acetyltransferase 1111323 yitH 5620291 yitH Bacillus pumilus SAFR-032 GNAT family acetyltransferase YP_001486269.1 1110466 R 315750 CDS YP_001486270.1 157691808 5620292 complement(1111491..1114919) 1 NC_009848.1 cobalamin-dependent methionine synthase; methionine synthase 1114919 5620292 BPUM_1026 Bacillus pumilus SAFR-032 methionine synthase YP_001486270.1 1111491 R 315750 CDS YP_001486271.1 157691809 5620293 complement(1114903..1116744) 1 NC_009848.1 catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions; bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase 1116744 yitJ 5620293 yitJ Bacillus pumilus SAFR-032 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase YP_001486271.1 1114903 R 315750 CDS YP_001486272.1 157691810 5620294 complement(1117023..1117514) 1 NC_009848.1 putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein 1117514 yitK 5620294 yitK Bacillus pumilus SAFR-032 putative nucleotide-binding protein YP_001486272.1 1117023 R 315750 CDS YP_001486273.1 157691811 5620295 1117752..1118600 1 NC_009848.1 possible nucleic acid binding protein; hypothetical protein 1118600 yitL 5620295 yitL Bacillus pumilus SAFR-032 hypothetical protein YP_001486273.1 1117752 D 315750 CDS YP_001486274.1 157691812 5620296 1118675..1119799 1 NC_009848.1 lipid ABC transporter substrate-binding protein 1119799 yufN 5620296 yufN Bacillus pumilus SAFR-032 lipid ABC transporter substrate-binding protein YP_001486274.1 1118675 D 315750 CDS YP_001486275.1 157691813 5620297 1119796..1121445 1 NC_009848.1 sensor histidine kinase 1121445 5620297 BPUM_1031 Bacillus pumilus SAFR-032 sensor histidine kinase YP_001486275.1 1119796 D 315750 CDS YP_001486276.1 157691814 5620298 complement(1121493..1122347) 1 NC_009848.1 DegV family protein YitS; spore protein YitS 1122347 yitS 5620298 yitS Bacillus pumilus SAFR-032 spore protein YitS YP_001486276.1 1121493 R 315750 CDS YP_001486277.1 157691815 5620299 1122488..1123330 1 NC_009848.1 hypothetical protein 1123330 yitT 5620299 yitT Bacillus pumilus SAFR-032 hypothetical protein YP_001486277.1 1122488 D 315750 CDS YP_001486278.1 157691816 5620300 1123441..1123800 1 NC_009848.1 intracellular proteinase inhibitor BsuPI 1123800 ipi 5620300 ipi Bacillus pumilus SAFR-032 intracellular proteinase inhibitor BsuPI YP_001486278.1 1123441 D 315750 CDS YP_001486279.1 157691817 5620301 complement(1123861..1124052) 1 NC_009848.1 hypothetical protein 1124052 5620301 BPUM_1035 Bacillus pumilus SAFR-032 hypothetical protein YP_001486279.1 1123861 R 315750 CDS YP_001486280.1 157691818 5620302 complement(1124049..1124201) 1 NC_009848.1 hypothetical protein 1124201 5620302 BPUM_1036 Bacillus pumilus SAFR-032 hypothetical protein YP_001486280.1 1124049 R 315750 CDS YP_001486281.1 157691819 5620303 complement(1124290..1125102) 1 NC_009848.1 HAD family phosphatase 1125102 yitU 5620303 yitU Bacillus pumilus SAFR-032 HAD family phosphatase YP_001486281.1 1124290 R 315750 CDS YP_001486282.1 157691820 5620304 1125239..1126024 1 NC_009848.1 serine peptidase 1126024 yitV 5620304 yitV Bacillus pumilus SAFR-032 serine peptidase YP_001486282.1 1125239 D 315750 CDS YP_001486283.1 157691821 5620305 1126070..1126378 1 NC_009848.1 hypothetical protein 1126378 yitW 5620305 yitW Bacillus pumilus SAFR-032 hypothetical protein YP_001486283.1 1126070 D 315750 CDS YP_001486284.1 157691822 5620306 1126501..1127946 1 NC_009848.1 possible FAD/FMN-containing oxidoreductase GlcD; major facilitator superfamily transporter 1127946 yitY 5620306 yitY Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001486284.1 1126501 D 315750 CDS YP_001486285.1 157691823 5620307 1127943..1128491 1 NC_009848.1 major facilitator superfamily transporter 1128491 yitZ 5620307 yitZ Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001486285.1 1127943 D 315750 CDS YP_001486286.1 157691824 5620308 1128623..1129666 1 NC_009848.1 catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 1129666 argC 5620308 argC Bacillus pumilus SAFR-032 N-acetyl-gamma-glutamyl-phosphate reductase YP_001486286.1 1128623 D 315750 CDS YP_001486287.1 157691825 5620309 1129687..1130907 1 NC_009848.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 1130907 argJ 5620309 argJ Bacillus pumilus SAFR-032 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_001486287.1 1129687 D 315750 CDS YP_001486288.1 157691826 5620310 1130922..1131698 1 NC_009848.1 catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 1131698 argB 5620310 argB Bacillus pumilus SAFR-032 acetylglutamate kinase YP_001486288.1 1130922 D 315750 CDS YP_001486289.1 157691827 5620311 1131695..1132846 1 NC_009848.1 acetylornithine aminotransferase 1132846 argD 5620311 argD Bacillus pumilus SAFR-032 acetylornithine aminotransferase YP_001486289.1 1131695 D 315750 CDS YP_001486290.1 157691828 5620312 1132916..1133977 1 NC_009848.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1133977 carA 5620312 carA Bacillus pumilus SAFR-032 carbamoyl phosphate synthase small subunit YP_001486290.1 1132916 D 315750 CDS YP_001486291.1 157691829 5620313 1133970..1137050 1 NC_009848.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1137050 carB 5620313 carB Bacillus pumilus SAFR-032 carbamoyl phosphate synthase large subunit YP_001486291.1 1133970 D 315750 CDS YP_001486292.1 157691830 5620314 1137047..1137997 1 NC_009848.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1137997 argF 5620314 argF Bacillus pumilus SAFR-032 ornithine carbamoyltransferase YP_001486292.1 1137047 D 315750 CDS YP_001486293.1 157691831 5620315 1138100..1138279 1 NC_009848.1 hypothetical protein 1138279 yjzC 5620315 yjzC Bacillus pumilus SAFR-032 hypothetical protein YP_001486293.1 1138100 D 315750 CDS YP_001486294.1 157691832 5620316 1138450..1139715 1 NC_009848.1 possible macrolide-efflux protein; major facilitator superfamily transporter 1139715 yvqJ1 5620316 yvqJ1 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001486294.1 1138450 D 315750 CDS YP_001486295.1 157691833 5620317 complement(1139831..1140025) 1 NC_009848.1 hypothetical protein 1140025 yjzD 5620317 yjzD Bacillus pumilus SAFR-032 hypothetical protein YP_001486295.1 1139831 R 315750 CDS YP_001486296.1 157691834 5620318 1140237..1140977 1 NC_009848.1 hypothetical protein 1140977 yjaU 5620318 yjaU Bacillus pumilus SAFR-032 hypothetical protein YP_001486296.1 1140237 D 315750 CDS YP_001486297.1 157691835 5620319 1141053..1141628 1 NC_009848.1 hypothetical protein 1141628 yjaV 5620319 yjaV Bacillus pumilus SAFR-032 hypothetical protein YP_001486297.1 1141053 D 315750 CDS YP_001486298.1 157691836 5620320 1141719..1142681 1 NC_009848.1 lipoprotein YjaW; positive regulator of comK 1142681 med 5620320 med Bacillus pumilus SAFR-032 positive regulator of comK YP_001486298.1 1141719 D 315750 CDS YP_001486299.1 157691837 5620321 1142692..1142889 1 NC_009848.1 late competence protein ComZ 1142889 comZ 5620321 comZ Bacillus pumilus SAFR-032 late competence protein ComZ YP_001486299.1 1142692 D 315750 CDS YP_001486300.1 157691838 5620322 complement(1142900..1143133) 1 NC_009848.1 hypothetical protein 1143133 5620322 BPUM_1056 Bacillus pumilus SAFR-032 hypothetical protein YP_001486300.1 1142900 R 315750 CDS YP_001486301.1 157691839 5620323 1143303..1144241 1 NC_009848.1 FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1144241 fabHA 5620323 fabHA Bacillus pumilus SAFR-032 3-oxoacyl-ACP synthase YP_001486301.1 1143303 D 315750 CDS YP_001486302.1 157691840 5620324 1144263..1145504 1 NC_009848.1 FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1145504 fabF 5620324 fabF Bacillus pumilus SAFR-032 3-oxoacyl-(acyl carrier protein) synthase II YP_001486302.1 1144263 D 315750 CDS YP_001486303.1 157691841 5620325 1145582..1146385 1 NC_009848.1 hypothetical protein 1146385 yjaZ 5620325 yjaZ Bacillus pumilus SAFR-032 hypothetical protein YP_001486303.1 1145582 D 315750 CDS YP_001486304.1 157691842 5620326 1146547..1147527 1 NC_009848.1 oligopeptide ABC transporter ATP-binding protein 1147527 appD 5620326 appD Bacillus pumilus SAFR-032 oligopeptide ABC transporter ATP-binding protein YP_001486304.1 1146547 D 315750 CDS YP_001486305.1 157691843 5620327 1147524..1148546 1 NC_009848.1 oligopeptide ABC transporter ATP-binding protein 1148546 appF 5620327 appF Bacillus pumilus SAFR-032 oligopeptide ABC transporter ATP-binding protein YP_001486305.1 1147524 D 315750 CDS YP_001486306.1 157691844 5620328 1148630..1150261 1 NC_009848.1 oligopeptide ABC transporter substrate-binding protein 1150261 appA 5620328 appA Bacillus pumilus SAFR-032 oligopeptide ABC transporter substrate-binding protein YP_001486306.1 1148630 D 315750 CDS YP_001486307.1 157691845 5620329 1150490..1151440 1 NC_009848.1 oligopeptide ABC transporter membrane protein 1151440 appB 5620329 appB Bacillus pumilus SAFR-032 oligopeptide ABC transporter membrane protein YP_001486307.1 1150490 D 315750 CDS YP_001486308.1 157691846 5620330 1151474..1152373 1 NC_009848.1 oligopeptide ABC transporter membrane protein 1152373 appC 5620330 appC Bacillus pumilus SAFR-032 oligopeptide ABC transporter membrane protein YP_001486308.1 1151474 D 315750 CDS YP_001486309.1 157691847 5620331 1152491..1153243 1 NC_009848.1 methyltransferase 1153243 5620331 BPUM_1065 Bacillus pumilus SAFR-032 methyltransferase YP_001486309.1 1152491 D 315750 CDS YP_001486310.1 157691848 5620332 1153433..1154677 1 NC_009848.1 major facilitator superfamily transporter 1154677 yfiS 5620332 yfiS Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001486310.1 1153433 D 315750 CDS YP_001486311.1 157691849 5620333 1154750..1155502 1 NC_009848.1 hypothetical protein 1155502 yjbA 5620333 yjbA Bacillus pumilus SAFR-032 hypothetical protein YP_001486311.1 1154750 D 315750 CDS YP_001486312.1 157691850 5620334 complement(1155538..1156533) 1 NC_009848.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1156533 trpS 5620334 trpS Bacillus pumilus SAFR-032 tryptophanyl-tRNA synthetase YP_001486312.1 1155538 R 315750 CDS YP_001486313.1 157691851 5620335 complement(1156850..1157209) 1 NC_009848.1 hypothetical protein 1157209 5620335 BPUM_1069 Bacillus pumilus SAFR-032 hypothetical protein YP_001486313.1 1156850 R 315750 CDS YP_001486314.1 157691852 5620336 1157563..1159221 1 NC_009848.1 oligopeptide ABC transporter substrate-binding protein 1159221 5620336 BPUM_1070 Bacillus pumilus SAFR-032 oligopeptide ABC transporter substrate-binding protein YP_001486314.1 1157563 D 315750 CDS YP_001486315.1 157691853 5620337 1159331..1160260 1 NC_009848.1 sporulation related transporter Spo0KB; oligopeptide ABC transporter membrane protein 1160260 oppB 5620337 oppB Bacillus pumilus SAFR-032 oligopeptide ABC transporter membrane protein YP_001486315.1 1159331 D 315750 CDS YP_001486316.1 157691854 5620338 1160257..1161288 1 NC_009848.1 oligopeptide ABC transporter membrane protein 1161288 oppC 5620338 oppC Bacillus pumilus SAFR-032 oligopeptide ABC transporter membrane protein YP_001486316.1 1160257 D 315750 CDS YP_001486317.1 157691855 5620339 1161304..1162368 1 NC_009848.1 oligopeptide ABC transporter ATP-binding protein 1162368 oppD 5620339 oppD Bacillus pumilus SAFR-032 oligopeptide ABC transporter ATP-binding protein YP_001486317.1 1161304 D 315750 CDS YP_001486318.1 157691856 5620340 1162361..1163290 1 NC_009848.1 ABC transporter ATP-binding protein 1163290 oppF 5620340 oppF Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001486318.1 1162361 D 315750 CDS YP_001486319.1 157691857 5620341 1163396..1163683 1 NC_009848.1 hypothetical protein 1163683 5620341 BPUM_1075 Bacillus pumilus SAFR-032 hypothetical protein YP_001486319.1 1163396 D 315750 CDS YP_001486320.1 157691858 5620342 1163820..1164398 1 NC_009848.1 N-acetyltransferase GCN5 1164398 yjbC 5620342 yjbC Bacillus pumilus SAFR-032 N-acetyltransferase GCN5 YP_001486320.1 1163820 D 315750 CDS YP_001486321.1 157691859 5620343 1164592..1164987 1 NC_009848.1 the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress; transcriptional regulator Spx 1164987 spxA 5620343 spxA Bacillus pumilus SAFR-032 transcriptional regulator Spx YP_001486321.1 1164592 D 315750 CDS YP_001486322.1 157691860 5620344 complement(1165028..1165693) 1 NC_009848.1 TerC; hypothetical protein 1165693 yjbE 5620344 yjbE Bacillus pumilus SAFR-032 hypothetical protein YP_001486322.1 1165028 R 315750 CDS YP_001486323.1 157691861 5620345 1165956..1166621 1 NC_009848.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein 1166621 mecA 5620345 mecA Bacillus pumilus SAFR-032 adaptor protein YP_001486323.1 1165956 D 315750 CDS YP_001486324.1 157691862 5620346 1166707..1168227 1 NC_009848.1 catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1168227 cls 5620346 cls Bacillus pumilus SAFR-032 cardiolipin synthetase YP_001486324.1 1166707 D 315750 CDS YP_001486325.1 157691863 5620347 1168391..1169551 1 NC_009848.1 CoiA; competence protein 1169551 yjbF 5620347 yjbF Bacillus pumilus SAFR-032 competence protein YP_001486325.1 1168391 D 315750 CDS YP_001486326.1 157691864 5620348 1169532..1171592 1 NC_009848.1 PepF; M03 oligoendopeptidase F 1171592 yjbG 5620348 yjbG Bacillus pumilus SAFR-032 M03 oligoendopeptidase F YP_001486326.1 1169532 D 315750 CDS YP_001486327.1 157691865 5620349 complement(1171696..1171869) 1 NC_009848.1 hypothetical protein 1171869 5620349 BPUM_1083 Bacillus pumilus SAFR-032 hypothetical protein YP_001486327.1 1171696 R 315750 CDS YP_001486328.1 157691866 5620350 complement(1172167..1173078) 1 NC_009848.1 hypothetical protein 1173078 yjbH 5620350 yjbH Bacillus pumilus SAFR-032 hypothetical protein YP_001486328.1 1172167 R 315750 CDS YP_001486329.1 157691867 5620351 complement(1173075..1173473) 1 NC_009848.1 hemoglobin 1173473 yjbI 5620351 yjbI Bacillus pumilus SAFR-032 hemoglobin YP_001486329.1 1173075 R 315750 CDS YP_001486330.1 157691868 5620352 complement(1173750..1174520) 1 NC_009848.1 ABC transporter ATP-binding protein 1174520 yjbJ 5620352 yjbJ Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001486330.1 1173750 R 315750 CDS YP_001486331.1 157691869 5620353 complement(1174539..1175117) 1 NC_009848.1 hypothetical protein 1175117 yjbK 5620353 yjbK Bacillus pumilus SAFR-032 hypothetical protein YP_001486331.1 1174539 R 315750 CDS YP_001486332.1 157691870 5620354 1175351..1175719 1 NC_009848.1 hypothetical protein 1175719 yjbL 5620354 yjbL Bacillus pumilus SAFR-032 hypothetical protein YP_001486332.1 1175351 D 315750 CDS YP_001486333.1 157691871 5620355 1175753..1176382 1 NC_009848.1 hypothetical protein 1176382 yjbM 5620355 yjbM Bacillus pumilus SAFR-032 hypothetical protein YP_001486333.1 1175753 D 315750 CDS YP_001486334.1 157691872 5620356 1176448..1177248 1 NC_009848.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1177248 ppnK 5620356 ppnK Bacillus pumilus SAFR-032 inorganic polyphosphate/ATP-NAD kinase YP_001486334.1 1176448 D 315750 CDS YP_001486335.1 157691873 5620357 1177293..1178159 1 NC_009848.1 pseudouridylate synthase 1178159 rluA2 5620357 rluA2 Bacillus pumilus SAFR-032 pseudouridylate synthase YP_001486335.1 1177293 D 315750 CDS YP_001486336.1 157691874 5620358 complement(1178201..1178944) 1 NC_009848.1 asymmetrical; catalyzes the formation of NTP and NMP from P(1),P(4)-bis(5'-nucleosyl) tetraphosphate; acts on bis(5'-guanosyl) tetraphosphate, bis(5'-xanthosyl)-tetraphosphate, on bis(5'-adenosyl)-tetraphosphate, and bis(5'-uridyl)-tetraphosphate; bis(5'-nucleosyl)-tetraphosphatase 1178944 yjbP 5620358 yjbP Bacillus pumilus SAFR-032 bis(5'-nucleosyl)-tetraphosphatase YP_001486336.1 1178201 R 315750 CDS YP_001486337.1 157691875 5620359 1179107..1180948 1 NC_009848.1 CPA2 family monovalent cation:proton (H+) antiporter-2 1180948 yjbQ 5620359 yjbQ Bacillus pumilus SAFR-032 CPA2 family monovalent cation:proton (H+) antiporter-2 YP_001486337.1 1179107 D 315750 CDS YP_001486338.1 157691876 5620360 1181196..1181906 1 NC_009848.1 thiaminase 1181906 tenA 5620360 tenA Bacillus pumilus SAFR-032 thiaminase YP_001486338.1 1181196 D 315750 CDS YP_001486339.1 157691877 5620361 1181866..1182498 1 NC_009848.1 regulates the production of extracellular enzymes; transcriptional regulator TenI 1182498 tenI 5620361 tenI Bacillus pumilus SAFR-032 transcriptional regulator TenI YP_001486339.1 1181866 D 315750 CDS YP_001486340.1 157691878 5620362 1182482..1183594 1 NC_009848.1 glycine oxidase 1183594 goxB 5620362 goxB Bacillus pumilus SAFR-032 glycine oxidase YP_001486340.1 1182482 D 315750 CDS YP_001486341.1 157691879 5620363 1183591..1183794 1 NC_009848.1 thiamine biosynthesis protein YjbS; hydroxyethylthiazole phosphate biosynthesis protein 1183794 thiS 5620363 thiS Bacillus pumilus SAFR-032 hydroxyethylthiazole phosphate biosynthesis protein YP_001486341.1 1183591 D 315750 CDS YP_001486342.1 157691880 5620364 1183799..1184566 1 NC_009848.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 1184566 thiG 5620364 thiG Bacillus pumilus SAFR-032 thiazole synthase YP_001486342.1 1183799 D 315750 CDS YP_001486343.1 157691881 5620365 1184563..1185576 1 NC_009848.1 catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways; thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein 1185576 thiF 5620365 thiF Bacillus pumilus SAFR-032 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein YP_001486343.1 1184563 D 315750 CDS YP_001486344.1 157691882 5620366 1185593..1186399 1 NC_009848.1 catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 1186399 thiDA 5620366 thiDA Bacillus pumilus SAFR-032 phosphomethylpyrimidine kinase YP_001486344.1 1185593 D 315750 CDS YP_001486345.1 157691883 5620367 1186550..1187326 1 NC_009848.1 Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 1187326 fabI 5620367 fabI Bacillus pumilus SAFR-032 enoyl-ACP reductase YP_001486345.1 1186550 D 315750 CDS YP_001486346.1 157691884 5620368 1187441..1188055 1 NC_009848.1 possible spore coat protein CotO; spore protein YjbX 1188055 yjbX 5620368 yjbX Bacillus pumilus SAFR-032 spore protein YjbX YP_001486346.1 1187441 D 315750 CDS YP_001486347.1 157691885 5620369 complement(1188091..1188534) 1 NC_009848.1 spore coat protein Z 1188534 cotZ 5620369 cotZ Bacillus pumilus SAFR-032 spore coat protein Z YP_001486347.1 1188091 R 315750 CDS YP_001486348.1 157691886 5620370 complement(1188551..1188712) 1 NC_009848.1 hypothetical protein 1188712 5620370 BPUM_1104 Bacillus pumilus SAFR-032 hypothetical protein YP_001486348.1 1188551 R 315750 CDS YP_001486349.1 157691887 5620371 complement(1188740..1189231) 1 NC_009848.1 spore coat protein Y 1189231 cotY 5620371 cotY Bacillus pumilus SAFR-032 spore coat protein Y YP_001486349.1 1188740 R 315750 CDS YP_001486350.1 157691888 5620372 complement(1189378..1189857) 1 NC_009848.1 spore coat protein X 1189857 cotX 5620372 cotX Bacillus pumilus SAFR-032 spore coat protein X YP_001486350.1 1189378 R 315750 CDS YP_001486351.1 157691889 5620373 complement(1189946..1190329) 1 NC_009848.1 spore coat protein W 1190329 cotW 5620373 cotW Bacillus pumilus SAFR-032 spore coat protein W YP_001486351.1 1189946 R 315750 CDS YP_001486352.1 157691890 5620374 complement(1190326..1190721) 1 NC_009848.1 spore coat protein V 1190721 cotV 5620374 cotV Bacillus pumilus SAFR-032 spore coat protein V YP_001486352.1 1190326 R 315750 CDS YP_001486353.1 157691891 5620375 1190902..1191240 1 NC_009848.1 hypothetical protein 1191240 yjcA 5620375 yjcA Bacillus pumilus SAFR-032 hypothetical protein YP_001486353.1 1190902 D 315750 CDS YP_001486354.1 157691892 5620376 1191273..1191440 1 NC_009848.1 hypothetical protein 1191440 5620376 BPUM_1110 Bacillus pumilus SAFR-032 hypothetical protein YP_001486354.1 1191273 D 315750 CDS YP_001486355.1 157691893 5620377 1191518..1191748 1 NC_009848.1 hypothetical protein 1191748 5620377 BPUM_1111 Bacillus pumilus SAFR-032 hypothetical protein YP_001486355.1 1191518 D 315750 CDS YP_001486356.1 157691894 5620378 1191833..1191958 1 NC_009848.1 hypothetical protein 1191958 yosA 5620378 yosA Bacillus pumilus SAFR-032 hypothetical protein YP_001486356.1 1191833 D 315750 CDS YP_001486357.1 157691895 5620379 1192097..1192354 1 NC_009848.1 spore coat assembly protein YjcC 1192354 spoVIF 5620379 spoVIF Bacillus pumilus SAFR-032 spore coat assembly protein YjcC YP_001486357.1 1192097 D 315750 CDS YP_001486358.1 157691896 5620380 complement(1192371..1194683) 1 NC_009848.1 UvrD Rep family helicase 1194683 yjcD 5620380 yjcD Bacillus pumilus SAFR-032 UvrD Rep family helicase YP_001486358.1 1192371 R 315750 CDS YP_001486359.1 157691897 5620381 1194807..1195067 1 NC_009848.1 hypothetical protein 1195067 5620381 BPUM_1115 Bacillus pumilus SAFR-032 hypothetical protein YP_001486359.1 1194807 D 315750 CDS YP_001486360.1 157691898 5620382 complement(1195148..1195582) 1 NC_009848.1 acetyltransferase 1195582 yjcF 5620382 yjcF Bacillus pumilus SAFR-032 acetyltransferase YP_001486360.1 1195148 R 315750 CDS YP_001486361.1 157691899 5620383 complement(1195589..1196104) 1 NC_009848.1 similar to 2'-5' RNA ligase; hypothetical protein 1196104 ligT 5620383 ligT Bacillus pumilus SAFR-032 hypothetical protein YP_001486361.1 1195589 R 315750 CDS YP_001486362.1 157691900 5620384 complement(1196157..1196897) 1 NC_009848.1 possible methylumbelliferyl-acetate deacetylase; esterase 1196897 yjcH 5620384 yjcH Bacillus pumilus SAFR-032 esterase YP_001486362.1 1196157 R 315750 CDS YP_001486363.1 157691901 5620385 1197320..1198438 1 NC_009848.1 catalyzes the formation of cysteine from cystathionine; in B. subtilis also has O-acetylhomoserine thiolyase activity; cystathionine gamma-synthase 1198438 yjcI 5620385 yjcI Bacillus pumilus SAFR-032 cystathionine gamma-synthase YP_001486363.1 1197320 D 315750 CDS YP_001486364.1 157691902 5620386 1198435..1199613 1 NC_009848.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 1199613 yjcJ 5620386 yjcJ Bacillus pumilus SAFR-032 cystathionine beta-lyase YP_001486364.1 1198435 D 315750 CDS YP_001486365.1 157691903 5620388 1200154..1200990 1 NC_009848.1 hypothetical protein 1200990 5620388 BPUM_1121 Bacillus pumilus SAFR-032 hypothetical protein YP_001486365.1 1200154 D 315750 CDS YP_001486366.1 157691904 5620389 complement(1201258..1201596) 1 NC_009848.1 transcriptional regulator 1201596 5620389 BPUM_1122 Bacillus pumilus SAFR-032 transcriptional regulator YP_001486366.1 1201258 R 315750 CDS YP_001486367.1 157691905 5620390 1201702..1202085 1 NC_009848.1 hypothetical protein 1202085 5620390 BPUM_1123 Bacillus pumilus SAFR-032 hypothetical protein YP_001486367.1 1201702 D 315750 CDS YP_001486368.1 157691906 5620391 1202320..1202508 1 NC_009848.1 hypothetical protein 1202508 5620391 BPUM_1124 Bacillus pumilus SAFR-032 hypothetical protein YP_001486368.1 1202320 D 315750 CDS YP_001486369.1 157691907 5620392 complement(1202715..1203653) 1 NC_009848.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1203653 accA1 5620392 accA1 Bacillus pumilus SAFR-032 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_001486369.1 1202715 R 315750 CDS YP_001486370.1 157691908 5620393 complement(1203686..1204132) 1 NC_009848.1 MarR family transcriptional regulator 1204132 5620393 BPUM_1126 Bacillus pumilus SAFR-032 MarR family transcriptional regulator YP_001486370.1 1203686 R 315750 CDS YP_001486371.1 157691909 5620394 complement(1205014..1205409) 1 NC_009848.1 hypothetical protein 1205409 5620394 BPUM_1127 Bacillus pumilus SAFR-032 hypothetical protein YP_001486371.1 1205014 R 315750 CDS YP_001486372.1 157691910 5620395 complement(1206033..1206221) 1 NC_009848.1 hypothetical protein 1206221 5620395 BPUM_1128 Bacillus pumilus SAFR-032 hypothetical protein YP_001486372.1 1206033 R 315750 CDS YP_001486373.1 157691911 5620396 complement(1206347..1206766) 1 NC_009848.1 hypothetical protein 1206766 5620396 BPUM_1129 Bacillus pumilus SAFR-032 hypothetical protein YP_001486373.1 1206347 R 315750 CDS YP_001486374.1 157691912 5620397 1206948..1207778 1 NC_009848.1 acetylxylan esterase 1207778 5620397 BPUM_1130 Bacillus pumilus SAFR-032 acetylxylan esterase YP_001486374.1 1206948 D 315750 CDS YP_001486375.1 157691913 5620398 1207866..1208528 1 NC_009848.1 chloramphenicol O-acetyltransferase 1208528 cat 5620398 cat Bacillus pumilus SAFR-032 chloramphenicol O-acetyltransferase YP_001486375.1 1207866 D 315750 CDS YP_001486376.1 157691914 5620399 1208729..1209847 1 NC_009848.1 aspartate phosphatase response regulator H 1209847 rapH 5620399 rapH Bacillus pumilus SAFR-032 aspartate phosphatase response regulator H YP_001486376.1 1208729 D 315750 CDS YP_001486377.1 157691915 5620400 1209837..1210010 1 NC_009848.1 RapH phosphatase inhibitor 1210010 phrH 5620400 phrH Bacillus pumilus SAFR-032 RapH phosphatase inhibitor YP_001486377.1 1209837 D 315750 CDS YP_001486378.1 157691916 5620401 1210120..1210947 1 NC_009848.1 hypothetical protein 1210947 5620401 BPUM_1134 Bacillus pumilus SAFR-032 hypothetical protein YP_001486378.1 1210120 D 315750 CDS YP_001486379.1 157691917 5620402 complement(1210989..1211864) 1 NC_009848.1 LysR family transcriptional regulator 1211864 5620402 BPUM_1135 Bacillus pumilus SAFR-032 LysR family transcriptional regulator YP_001486379.1 1210989 R 315750 CDS YP_001486380.1 157691918 5620403 complement(1211888..1212586) 1 NC_009848.1 aspartate racemase 1212586 racX 5620403 racX Bacillus pumilus SAFR-032 aspartate racemase YP_001486380.1 1211888 R 315750 CDS YP_001486381.1 157691919 5620404 complement(1212689..1213252) 1 NC_009848.1 acetyltransferase 1213252 5620404 BPUM_1137 Bacillus pumilus SAFR-032 acetyltransferase YP_001486381.1 1212689 R 315750 CDS YP_001486382.1 157691920 5620405 complement(1213262..1214158) 1 NC_009848.1 LysR family transcriptional regulator 1214158 5620405 BPUM_1138 Bacillus pumilus SAFR-032 LysR family transcriptional regulator YP_001486382.1 1213262 R 315750 CDS YP_001486383.1 157691921 5620406 1214286..1215440 1 NC_009848.1 major facilitator superfamily transporter 1215440 5620406 BPUM_1139 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001486383.1 1214286 D 315750 CDS YP_001486384.1 157691922 5620407 1215482..1215901 1 NC_009848.1 GNAT family acetyltransferase 1215901 5620407 BPUM_1140 Bacillus pumilus SAFR-032 GNAT family acetyltransferase YP_001486384.1 1215482 D 315750 CDS YP_001486385.1 157691923 5620408 1216031..1217164 1 NC_009848.1 aspartate phosphatase response regulator 1217164 rapA1 5620408 rapA1 Bacillus pumilus SAFR-032 aspartate phosphatase response regulator YP_001486385.1 1216031 D 315750 CDS YP_001486386.1 157691924 5620409 1217154..1217291 1 NC_009848.1 RapA phosphatase inhibitor PhrA1 1217291 phrA1 5620409 phrA1 Bacillus pumilus SAFR-032 RapA phosphatase inhibitor PhrA1 YP_001486386.1 1217154 D 315750 CDS YP_001486387.1 157691925 5620410 1217533..1217823 1 NC_009848.1 hypothetical protein 1217823 5620410 BPUM_1143 Bacillus pumilus SAFR-032 hypothetical protein YP_001486387.1 1217533 D 315750 CDS YP_001486388.1 157691926 5620411 1217998..1218447 1 NC_009848.1 DNA gyrase inhibitor 1218447 yosT 5620411 yosT Bacillus pumilus SAFR-032 DNA gyrase inhibitor YP_001486388.1 1217998 D 315750 CDS YP_001486389.1 157691927 5620412 1218547..1219176 1 NC_009848.1 hypothetical protein 1219176 5620412 BPUM_1145 Bacillus pumilus SAFR-032 hypothetical protein YP_001486389.1 1218547 D 315750 CDS YP_001486390.1 157691928 5620413 1219341..1220522 1 NC_009848.1 YncD; alanine racemase 1220522 alr2 5620413 alr2 Bacillus pumilus SAFR-032 alanine racemase YP_001486390.1 1219341 D 315750 CDS YP_001486391.1 157691929 5620414 complement(1220604..1221716) 1 NC_009848.1 alcohol dehydrogenase 1221716 5620414 BPUM_1147 Bacillus pumilus SAFR-032 alcohol dehydrogenase YP_001486391.1 1220604 R 315750 CDS YP_001486392.1 157691930 5620415 1221929..1222543 1 NC_009848.1 TetR family transcriptional regulator 1222543 5620415 BPUM_1148 Bacillus pumilus SAFR-032 TetR family transcriptional regulator YP_001486392.1 1221929 D 315750 CDS YP_001486393.1 157691931 5620416 1222940..1223842 1 NC_009848.1 structural flagella protein; flagellin 1223842 hag2 5620416 hag2 Bacillus pumilus SAFR-032 flagellin YP_001486393.1 1222940 D 315750 CDS YP_001486394.1 157691932 5620417 1224113..1225030 1 NC_009848.1 structural flagella protein; flagellin 1225030 hag3 5620417 hag3 Bacillus pumilus SAFR-032 flagellin YP_001486394.1 1224113 D 315750 CDS YP_001486395.1 157691933 5620418 1225229..1226134 1 NC_009848.1 structural flagella protein; flagellin 1226134 hag4 5620418 hag4 Bacillus pumilus SAFR-032 flagellin YP_001486395.1 1225229 D 315750 CDS YP_001486396.1 157691934 5620419 1226421..1227320 1 NC_009848.1 structural flagella protein; flagellin 1227320 hag5 5620419 hag5 Bacillus pumilus SAFR-032 flagellin YP_001486396.1 1226421 D 315750 CDS YP_001486397.1 157691935 5620420 complement(1227353..1228813) 1 NC_009848.1 FAD dependent dehydrogenase 1228813 5620420 BPUM_1153 Bacillus pumilus SAFR-032 FAD dependent dehydrogenase YP_001486397.1 1227353 R 315750 CDS YP_001486398.1 157691936 5620421 1229059..1229862 1 NC_009848.1 possible ABC superfamily ATP binding cassette transporter, binding protein; chemotaxis sensory transducer protein 1229862 5620421 BPUM_1154 Bacillus pumilus SAFR-032 chemotaxis sensory transducer protein YP_001486398.1 1229059 D 315750 CDS YP_001486399.1 157691937 5620422 complement(1229899..1230294) 1 NC_009848.1 hypothetical protein 1230294 5620422 BPUM_1155 Bacillus pumilus SAFR-032 hypothetical protein YP_001486399.1 1229899 R 315750 CDS YP_001486400.1 157691938 5620423 1230514..1231137 1 NC_009848.1 hypothetical protein 1231137 5620423 BPUM_1156 Bacillus pumilus SAFR-032 hypothetical protein YP_001486400.1 1230514 D 315750 CDS YP_001486401.1 157691939 5620424 complement(1231154..1231702) 1 NC_009848.1 phage PBSX protein; hypothetical protein 1231702 xkdA 5620424 xkdA Bacillus pumilus SAFR-032 hypothetical protein YP_001486401.1 1231154 R 315750 CDS YP_001486402.1 157691940 5620425 1232013..1232912 1 NC_009848.1 N-acetylmuramoyl-L-alanine amidase 1232912 xlyA 5620425 xlyA Bacillus pumilus SAFR-032 N-acetylmuramoyl-L-alanine amidase YP_001486402.1 1232013 D 315750 CDS YP_001486403.1 157691941 5620426 complement(1233133..1233303) 1 NC_009848.1 stage II sporulation membrane protein SB 1233303 spoIISB 5620426 spoIISB Bacillus pumilus SAFR-032 stage II sporulation membrane protein SB YP_001486403.1 1233133 R 315750 CDS YP_001486404.1 157691942 5620427 complement(1233278..1234048) 1 NC_009848.1 stage II sporulation membrane protein SA 1234048 spoIISA 5620427 spoIISA Bacillus pumilus SAFR-032 stage II sporulation membrane protein SA YP_001486404.1 1233278 R 315750 CDS YP_001486405.1 157691943 5620428 complement(1234185..1235183) 1 NC_009848.1 PiT family inorganic phosphate transporter 1235183 pit 5620428 pit Bacillus pumilus SAFR-032 PiT family inorganic phosphate transporter YP_001486405.1 1234185 R 315750 CDS YP_001486406.1 157691944 5620429 complement(1235199..1235816) 1 NC_009848.1 phosphate transport regulator 1235816 ykaA 5620429 ykaA Bacillus pumilus SAFR-032 phosphate transport regulator YP_001486406.1 1235199 R 315750 CDS YP_001486407.1 157691945 5620430 complement(1236023..1236481) 1 NC_009848.1 hypothetical protein 1236481 5620430 BPUM_1163 Bacillus pumilus SAFR-032 hypothetical protein YP_001486407.1 1236023 R 315750 CDS YP_001486408.1 157691946 5620431 1236709..1238460 1 NC_009848.1 gamma-glutamyltransferase 1238460 ggt 5620431 ggt Bacillus pumilus SAFR-032 gamma-glutamyltransferase YP_001486408.1 1236709 D 315750 CDS YP_001486409.1 157691947 5620432 1238495..1238701 1 NC_009848.1 hypothetical protein 1238701 5620432 BPUM_1165 Bacillus pumilus SAFR-032 hypothetical protein YP_001486409.1 1238495 D 315750 CDS YP_001486410.1 157691948 5620433 1238787..1239254 1 NC_009848.1 PTS family fructose/mannitol porter component IIA 1239254 5620433 BPUM_1166 Bacillus pumilus SAFR-032 PTS family fructose/mannitol porter component IIA YP_001486410.1 1238787 D 315750 CDS YP_001486411.1 157691949 5620434 1239309..1240682 1 NC_009848.1 PTS system galactitol (gat) transporter subunit IIC 1240682 5620434 BPUM_1167 Bacillus pumilus SAFR-032 PTS system galactitol (gat) transporter subunit IIC YP_001486411.1 1239309 D 315750 CDS YP_001486412.1 157691950 5620435 1240702..1240980 1 NC_009848.1 PTS family galactitol (gat) porter component IIB 1240980 5620435 BPUM_1168 Bacillus pumilus SAFR-032 PTS family galactitol (gat) porter component IIB YP_001486412.1 1240702 D 315750 CDS YP_001486413.1 157691951 5620436 1241042..1241488 1 NC_009848.1 hypothetical protein 1241488 5620436 BPUM_1169 Bacillus pumilus SAFR-032 hypothetical protein YP_001486413.1 1241042 D 315750 CDS YP_001486414.1 157691952 5620437 1241485..1242516 1 NC_009848.1 sorbitol dehydrogenase AdhC; L-iditol 2-dehydrogenase 1242516 gutB 5620437 gutB Bacillus pumilus SAFR-032 L-iditol 2-dehydrogenase YP_001486414.1 1241485 D 315750 CDS YP_001486415.1 157691953 5620438 1242699..1243682 1 NC_009848.1 pyruvate/2-oxoglutarate dehydrogenase complex E1 component alpha subunit AcoA; pyruvate dehydrogenase (acetyl-transferring) E1 component alpha subunit 1243682 5620438 BPUM_1171 Bacillus pumilus SAFR-032 pyruvate dehydrogenase (acetyl-transferring) E1 component alpha subunit YP_001486415.1 1242699 D 315750 CDS YP_001486416.1 157691954 5620439 1243699..1244694 1 NC_009848.1 pyruvate/2-oxoglutarate dehydrogenase complex, E1 component, beta subunit AcoB; pyruvate dehydrogenase (acetyl-transferring) E1 component beta subunit 1244694 5620439 BPUM_1172 Bacillus pumilus SAFR-032 pyruvate dehydrogenase (acetyl-transferring) E1 component beta subunit YP_001486416.1 1243699 D 315750 CDS YP_001486417.1 157691955 5620440 1244712..1246037 1 NC_009848.1 pyruvate/2-oxoglutarate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase AcoC; branched-chain alpha-keto acid dehydrogenase subunit E2 1246037 5620440 BPUM_1173 Bacillus pumilus SAFR-032 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_001486417.1 1244712 D 315750 CDS YP_001486418.1 157691956 5620441 1246050..1247432 1 NC_009848.1 pyruvate/2-oxoglutarate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase AcoL; dihydrolipoyl dehydrogenase 1247432 5620441 BPUM_1174 Bacillus pumilus SAFR-032 dihydrolipoyl dehydrogenase YP_001486418.1 1246050 D 315750 CDS YP_001486419.1 157691957 5620442 1247458..1248159 1 NC_009848.1 short chain dehydrogenase 1248159 5620442 BPUM_1175 Bacillus pumilus SAFR-032 short chain dehydrogenase YP_001486419.1 1247458 D 315750 CDS YP_001486420.1 157691958 5620443 1248149..1248904 1 NC_009848.1 bacilysin biosynthesis oxidoreductase BacC; short chain dehydrogenase 1248904 ywfD 5620443 ywfD Bacillus pumilus SAFR-032 short chain dehydrogenase YP_001486420.1 1248149 D 315750 CDS YP_001486421.1 157691959 5620444 1249016..1249972 1 NC_009848.1 transcriptional regulator 1249972 5620444 BPUM_1177 Bacillus pumilus SAFR-032 transcriptional regulator YP_001486421.1 1249016 D 315750 CDS YP_001486422.1 157691960 5620445 1250052..1250366 1 NC_009848.1 hypothetical protein 1250366 5620445 BPUM_1178 Bacillus pumilus SAFR-032 hypothetical protein YP_001486422.1 1250052 D 315750 CDS YP_001486423.1 157691961 5620446 complement(1250537..1251862) 1 NC_009848.1 APC family amino acid-polyamine-organocation transporter 1251862 potE 5620446 potE Bacillus pumilus SAFR-032 APC family amino acid-polyamine-organocation transporter YP_001486423.1 1250537 R 315750 CDS YP_001486424.1 157691962 5620447 1252181..1253137 1 NC_009848.1 YkcA; lactoylglutathione lyase 1253137 gloA 5620447 gloA Bacillus pumilus SAFR-032 lactoylglutathione lyase YP_001486424.1 1252181 D 315750 CDS YP_001486425.1 157691963 5620448 complement(1253222..1254538) 1 NC_009848.1 S1 family serine protease; heat shock protein HtrA 1254538 htrA 5620448 htrA Bacillus pumilus SAFR-032 heat shock protein HtrA YP_001486425.1 1253222 R 315750 CDS YP_001486426.1 157691964 5620449 1254521..1254694 1 NC_009848.1 hypothetical protein 1254694 5620449 BPUM_1182 Bacillus pumilus SAFR-032 hypothetical protein YP_001486426.1 1254521 D 315750 CDS YP_001486427.1 157691965 5620450 1254698..1255519 1 NC_009848.1 catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 1255519 proC 5620450 proC Bacillus pumilus SAFR-032 pyrroline-5-carboxylate reductase YP_001486427.1 1254698 D 315750 CDS YP_001486428.1 157691966 5620451 1255703..1256533 1 NC_009848.1 M55 family D-aminopeptidase 1256533 dppA 5620451 dppA Bacillus pumilus SAFR-032 M55 family D-aminopeptidase YP_001486428.1 1255703 D 315750 CDS YP_001486429.1 157691967 5620452 1256552..1257487 1 NC_009848.1 peptide ABC transporter membrane protein 1257487 dppB 5620452 dppB Bacillus pumilus SAFR-032 peptide ABC transporter membrane protein YP_001486429.1 1256552 D 315750 CDS YP_001486430.1 157691968 5620453 1257484..1258446 1 NC_009848.1 peptide ABC transporter membrane protein 1258446 dppC 5620453 dppC Bacillus pumilus SAFR-032 peptide ABC transporter membrane protein YP_001486430.1 1257484 D 315750 CDS YP_001486431.1 157691969 5620454 1258454..1259461 1 NC_009848.1 peptide ABC transporter ATP-binding protein 1259461 dppD 5620454 dppD Bacillus pumilus SAFR-032 peptide ABC transporter ATP-binding protein YP_001486431.1 1258454 D 315750 CDS YP_001486432.1 157691970 5620455 1259461..1261083 1 NC_009848.1 peptide ABC transporter ATP-binding protein 1261083 dppE 5620455 dppE Bacillus pumilus SAFR-032 peptide ABC transporter ATP-binding protein YP_001486432.1 1259461 D 315750 CDS YP_001486433.1 157691971 5620456 1261195..1262136 1 NC_009848.1 U61 family carboxypeptidase 1262136 ykfA 5620456 ykfA Bacillus pumilus SAFR-032 U61 family carboxypeptidase YP_001486433.1 1261195 D 315750 CDS YP_001486434.1 157691972 5620457 1262133..1263212 1 NC_009848.1 L-alanine-DL-glutamate epimerase 1263212 ykfB 5620457 ykfB Bacillus pumilus SAFR-032 L-alanine-DL-glutamate epimerase YP_001486434.1 1262133 D 315750 CDS YP_001486435.1 157691973 5620458 1263212..1264129 1 NC_009848.1 hydrolase 1264129 ykfC 5620458 ykfC Bacillus pumilus SAFR-032 hydrolase YP_001486435.1 1263212 D 315750 CDS YP_001486436.1 157691974 5620459 1264119..1265087 1 NC_009848.1 YkfD; oligopeptide ABC transporter ATP-binding protein 1265087 5620459 BPUM_1192 Bacillus pumilus SAFR-032 oligopeptide ABC transporter ATP-binding protein YP_001486436.1 1264119 D 315750 CDS YP_001486437.1 157691975 5620460 complement(1265126..1266007) 1 NC_009848.1 N-dimethylarginine dimethylaminohydrolase 1266007 5620460 BPUM_1193 Bacillus pumilus SAFR-032 N-dimethylarginine dimethylaminohydrolase YP_001486437.1 1265126 R 315750 CDS YP_001486438.1 157691976 5620461 1266184..1266708 1 NC_009848.1 acyl-CoA thioester hydrolase 1266708 5620461 BPUM_1194 Bacillus pumilus SAFR-032 acyl-CoA thioester hydrolase YP_001486438.1 1266184 D 315750 CDS YP_001486439.1 157691977 5620462 1266823..1267149 1 NC_009848.1 PadR family transcriptional regulator 1267149 5620462 BPUM_1195 Bacillus pumilus SAFR-032 PadR family transcriptional regulator YP_001486439.1 1266823 D 315750 CDS YP_001486440.1 157691978 5620463 complement(1267663..1267863) 1 NC_009848.1 hypothetical protein 1267863 5620463 BPUM_1196 Bacillus pumilus SAFR-032 hypothetical protein YP_001486440.1 1267663 R 315750 CDS YP_001486441.1 157691979 5620464 1267931..1268146 1 NC_009848.1 hypothetical protein 1268146 5620464 BPUM_1197 Bacillus pumilus SAFR-032 hypothetical protein YP_001486441.1 1267931 D 315750 CDS YP_001486442.1 157691980 5620465 1268219..1268707 1 NC_009848.1 hypothetical protein 1268707 5620465 BPUM_1198 Bacillus pumilus SAFR-032 hypothetical protein YP_001486442.1 1268219 D 315750 CDS YP_001486443.1 157691981 5620466 1268726..1269271 1 NC_009848.1 acetyltransferase 1269271 5620466 BPUM_1199 Bacillus pumilus SAFR-032 acetyltransferase YP_001486443.1 1268726 D 315750 CDS YP_001486444.1 157691982 5620467 complement(1269286..1270329) 1 NC_009848.1 methylated-DNA--protein-cysteine methyltransferase 1270329 ada 5620467 ada Bacillus pumilus SAFR-032 methylated-DNA--protein-cysteine methyltransferase YP_001486444.1 1269286 R 315750 CDS YP_001486445.1 157691983 5620468 complement(1270501..1270635) 1 NC_009848.1 hypothetical protein 1270635 5620468 BPUM_1201 Bacillus pumilus SAFR-032 hypothetical protein YP_001486445.1 1270501 R 315750 CDS YP_001486446.1 157691984 5620469 1271031..1271360 1 NC_009848.1 DMT superfamily drug/metabolite transporter 1271360 5620469 BPUM_1202 Bacillus pumilus SAFR-032 DMT superfamily drug/metabolite transporter YP_001486446.1 1271031 D 315750 CDS YP_001486447.1 157691985 5620470 1271357..1271671 1 NC_009848.1 DMT superfamily drug/metabolite transporter 1271671 ykkD 5620470 ykkD Bacillus pumilus SAFR-032 DMT superfamily drug/metabolite transporter YP_001486447.1 1271357 D 315750 CDS YP_001486448.1 157691986 5620471 complement(1271704..1271925) 1 NC_009848.1 hypothetical protein 1271925 5620471 BPUM_1204 Bacillus pumilus SAFR-032 hypothetical protein YP_001486448.1 1271704 R 315750 CDS YP_001486449.1 157691987 5620472 1272052..1272954 1 NC_009848.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1272954 purU 5620472 purU Bacillus pumilus SAFR-032 formyltetrahydrofolate deformylase YP_001486449.1 1272052 D 315750 CDS YP_001486450.1 157691988 5620473 1273125..1273310 1 NC_009848.1 hypothetical protein 1273310 5620473 BPUM_1206 Bacillus pumilus SAFR-032 hypothetical protein YP_001486450.1 1273125 D 315750 CDS YP_001486451.1 157691989 5620474 1273273..1274370 1 NC_009848.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1274370 proB 5620474 proB Bacillus pumilus SAFR-032 gamma-glutamyl kinase YP_001486451.1 1273273 D 315750 CDS YP_001486452.1 157691990 5620475 1274383..1275633 1 NC_009848.1 Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1275633 proA 5620475 proA Bacillus pumilus SAFR-032 gamma-glutamyl phosphate reductase YP_001486452.1 1274383 D 315750 CDS YP_001486453.1 157691991 5620476 1275756..1276892 1 NC_009848.1 aspartate phosphatase response regulator 1276892 rapA2 5620476 rapA2 Bacillus pumilus SAFR-032 aspartate phosphatase response regulator YP_001486453.1 1275756 D 315750 CDS YP_001486454.1 157691992 5620477 1276882..1277016 1 NC_009848.1 phosphatase RapA inhibitor PhrA2 1277016 phrA2 5620477 phrA2 Bacillus pumilus SAFR-032 phosphatase RapA inhibitor PhrA2 YP_001486454.1 1276882 D 315750 CDS YP_001486455.1 157691993 5620478 1277367..1277795 1 NC_009848.1 organic hydroperoxide resistance protein 1277795 ohrA 5620478 ohrA Bacillus pumilus SAFR-032 organic hydroperoxide resistance protein YP_001486455.1 1277367 D 315750 CDS YP_001486456.1 157691994 5620479 complement(1277828..1278274) 1 NC_009848.1 transcriptional regulator OhrR 1278274 ohrR 5620479 ohrR Bacillus pumilus SAFR-032 transcriptional regulator OhrR YP_001486456.1 1277828 R 315750 CDS YP_001486457.1 157691995 5620480 1278437..1278853 1 NC_009848.1 possible redox protein OsmC; organic hydroperoxide resistance protein 1278853 ohrB 5620480 ohrB Bacillus pumilus SAFR-032 organic hydroperoxide resistance protein YP_001486457.1 1278437 D 315750 CDS YP_001486458.1 157691996 5620481 complement(1278910..1279380) 1 NC_009848.1 guanine deaminase 1279380 guaD 5620481 guaD Bacillus pumilus SAFR-032 guanine deaminase YP_001486458.1 1278910 R 315750 CDS YP_001486459.1 157691997 5620482 complement(1279519..1281807) 1 NC_009848.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 1281807 metE 5620482 metE Bacillus pumilus SAFR-032 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_001486459.1 1279519 R 315750 CDS YP_001486460.1 157691998 5620483 1281968..1282123 1 NC_009848.1 hypothetical protein 1282123 5620483 BPUM_1216 Bacillus pumilus SAFR-032 hypothetical protein YP_001486460.1 1281968 D 315750 CDS YP_001486461.1 157691999 5620484 complement(1282265..1283224) 1 NC_009848.1 serine protease 1283224 ispA 5620484 ispA Bacillus pumilus SAFR-032 serine protease YP_001486461.1 1282265 R 315750 CDS YP_001486462.1 157692000 5620485 complement(1283383..1283574) 1 NC_009848.1 hypothetical protein 1283574 5620485 BPUM_1218 Bacillus pumilus SAFR-032 hypothetical protein YP_001486462.1 1283383 R 315750 CDS YP_001486463.1 157692001 5620486 1283671..1284357 1 NC_009848.1 response regulator 1284357 ykoG 5620486 ykoG Bacillus pumilus SAFR-032 response regulator YP_001486463.1 1283671 D 315750 CDS YP_001486464.1 157692002 5620487 1284361..1285710 1 NC_009848.1 sensor histidine kinase 1285710 ykoH 5620487 ykoH Bacillus pumilus SAFR-032 sensor histidine kinase YP_001486464.1 1284361 D 315750 CDS YP_001486465.1 157692003 5620488 1285777..1286466 1 NC_009848.1 hypothetical protein 1286466 ykoI 5620488 ykoI Bacillus pumilus SAFR-032 hypothetical protein YP_001486465.1 1285777 D 315750 CDS YP_001486466.1 157692004 5620489 1286560..1287078 1 NC_009848.1 hypothetical protein 1287078 ykoJ 5620489 ykoJ Bacillus pumilus SAFR-032 hypothetical protein YP_001486466.1 1286560 D 315750 CDS YP_001486467.1 157692005 5620490 1287364..1287504 1 NC_009848.1 hypothetical protein 1287504 ykzD 5620490 ykzD Bacillus pumilus SAFR-032 hypothetical protein YP_001486467.1 1287364 D 315750 CDS YP_001486468.1 157692006 5620491 complement(1287536..1287730) 1 NC_009848.1 hypothetical protein 1287730 5620491 BPUM_1224 Bacillus pumilus SAFR-032 hypothetical protein YP_001486468.1 1287536 R 315750 CDS YP_001486469.1 157692007 5620492 1288009..1289367 1 NC_009848.1 Mg2+/Co2+ transporter 1289367 ykoK 5620492 ykoK Bacillus pumilus SAFR-032 Mg2+/Co2+ transporter YP_001486469.1 1288009 D 315750 CDS YP_001486470.1 157692008 5620493 1289469..1289867 1 NC_009848.1 hypothetical protein 1289867 5620493 BPUM_1226 Bacillus pumilus SAFR-032 hypothetical protein YP_001486470.1 1289469 D 315750 CDS YP_001486471.1 157692009 5620494 complement(1289937..1290800) 1 NC_009848.1 LysR family transcriptional regulator 1290800 5620494 BPUM_1227 Bacillus pumilus SAFR-032 LysR family transcriptional regulator YP_001486471.1 1289937 R 315750 CDS YP_001486472.1 157692010 5620495 1291013..1291384 1 NC_009848.1 hypothetical protein 1291384 5620495 BPUM_1228 Bacillus pumilus SAFR-032 hypothetical protein YP_001486472.1 1291013 D 315750 CDS YP_001486473.1 157692011 5620497 complement(1291964..1292293) 1 NC_009848.1 transcriptional regulator 1292293 tnrA 5620497 tnrA Bacillus pumilus SAFR-032 transcriptional regulator YP_001486473.1 1291964 R 315750 CDS YP_001486474.1 157692012 5620498 1292480..1292638 1 NC_009848.1 hypothetical protein 1292638 ykzB 5620498 ykzB Bacillus pumilus SAFR-032 hypothetical protein YP_001486474.1 1292480 D 315750 CDS YP_001486475.1 157692013 5620499 1292678..1292842 1 NC_009848.1 hypothetical protein 1292842 5620499 BPUM_1232 Bacillus pumilus SAFR-032 hypothetical protein YP_001486475.1 1292678 D 315750 CDS YP_001486476.1 157692014 5620500 1293201..1293662 1 NC_009848.1 MarR family transcriptional regulator 1293662 ykoM 5620500 ykoM Bacillus pumilus SAFR-032 MarR family transcriptional regulator YP_001486476.1 1293201 D 315750 CDS YP_001486477.1 157692015 5620501 complement(1293693..1296116) 1 NC_009848.1 cell signaling protein 1296116 ykoW 5620501 ykoW Bacillus pumilus SAFR-032 cell signaling protein YP_001486477.1 1293693 R 315750 CDS YP_001486478.1 157692016 5620502 1296360..1296974 1 NC_009848.1 DedA family membrane protein 1296974 ykoX 5620502 ykoX Bacillus pumilus SAFR-032 DedA family membrane protein YP_001486478.1 1296360 D 315750 CDS YP_001486479.1 157692017 5620503 1297257..1298048 1 NC_009848.1 possible tellurium resistance protein TerC; hypothetical protein 1298048 ykoY 5620503 ykoY Bacillus pumilus SAFR-032 hypothetical protein YP_001486479.1 1297257 D 315750 CDS YP_001486480.1 157692018 5620504 1298264..1299019 1 NC_009848.1 Heat shock-induced; putative RNA polymerase sigma factor SigI 1299019 sigI 5620504 sigI Bacillus pumilus SAFR-032 putative RNA polymerase sigma factor SigI YP_001486480.1 1298264 D 315750 CDS YP_001486481.1 157692019 5620505 1299016..1300200 1 NC_009848.1 YkrI; SigI regulator RsgI 1300200 rsgI 5620505 rsgI Bacillus pumilus SAFR-032 SigI regulator RsgI YP_001486481.1 1299016 D 315750 CDS YP_001486482.1 157692020 5620506 complement(1300240..1300434) 1 NC_009848.1 small acid-soluble spore protein D 1300434 sspD 5620506 sspD Bacillus pumilus SAFR-032 small acid-soluble spore protein D YP_001486482.1 1300240 R 315750 CDS YP_001486483.1 157692021 5620507 complement(1300557..1301270) 1 NC_009848.1 YkrK; hypothetical protein 1301270 5620507 BPUM_1240 Bacillus pumilus SAFR-032 hypothetical protein YP_001486483.1 1300557 R 315750 CDS YP_001486484.1 157692022 5620508 1301551..1302450 1 NC_009848.1 putative metalloprotease; heat shock protein HtpX 1302450 htpX 5620508 htpX Bacillus pumilus SAFR-032 heat shock protein HtpX YP_001486484.1 1301551 D 315750 CDS YP_001486485.1 157692023 5620509 1302594..1303940 1 NC_009848.1 Trk family K+ transporter NAD+ binding protein 1303940 ykrM 5620509 ykrM Bacillus pumilus SAFR-032 Trk family K+ transporter NAD+ binding protein YP_001486485.1 1302594 D 315750 CDS YP_001486486.1 157692024 5620510 1304038..1304556 1 NC_009848.1 hypothetical protein 1304556 5620510 BPUM_1243 Bacillus pumilus SAFR-032 hypothetical protein YP_001486486.1 1304038 D 315750 CDS YP_001486487.1 157692025 5620511 1304563..1304727 1 NC_009848.1 hypothetical protein 1304727 5620511 BPUM_1244 Bacillus pumilus SAFR-032 hypothetical protein YP_001486487.1 1304563 D 315750 CDS YP_001486488.1 157692026 5620512 1304720..1304887 1 NC_009848.1 hypothetical protein 1304887 5620512 BPUM_1245 Bacillus pumilus SAFR-032 hypothetical protein YP_001486488.1 1304720 D 315750 CDS YP_001486489.1 157692027 5620513 complement(1304915..1305934) 1 NC_009848.1 acetyltransferase 1305934 ykrP 5620513 ykrP Bacillus pumilus SAFR-032 acetyltransferase YP_001486489.1 1304915 R 315750 CDS YP_001486490.1 157692028 5620514 1306228..1308423 1 NC_009848.1 sporulation sensor histidine kinase E 1308423 kinE 5620514 kinE Bacillus pumilus SAFR-032 sporulation sensor histidine kinase E YP_001486490.1 1306228 D 315750 CDS YP_001486491.1 157692029 5620515 1308425..1308916 1 NC_009848.1 O-6-methylguanine-DNA-alkyltransferase; methylated-DNA-[protein]-cysteine S-methyltransferase 1308916 ogt 5620515 ogt Bacillus pumilus SAFR-032 methylated-DNA-[protein]-cysteine S-methyltransferase YP_001486491.1 1308425 D 315750 CDS YP_001486492.1 157692030 5620516 complement(1309168..1310229) 1 NC_009848.1 isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase 1310229 mtnA 5620516 mtnA Bacillus pumilus SAFR-032 methylthioribose-1-phosphate isomerase YP_001486492.1 1309168 R 315750 CDS YP_001486493.1 157692031 5620517 complement(1310236..1311429) 1 NC_009848.1 phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway; methylthioribose kinase 1311429 mtnK 5620517 mtnK Bacillus pumilus SAFR-032 methylthioribose kinase YP_001486493.1 1310236 R 315750 CDS YP_001486494.1 157692032 5620518 1311833..1313023 1 NC_009848.1 produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however; transaminase 1313023 mtnE 5620518 mtnE Bacillus pumilus SAFR-032 transaminase YP_001486494.1 1311833 D 315750 CDS YP_001486495.1 157692033 5620519 1313242..1314492 1 NC_009848.1 converts 2,3-diketo-5-methylthiopentyl-1-phosphate into 2-hydroxy 3-keto-5-methylthiopentenyl-1-phosphate; involved in methionine salvage; 2,3-diketo-5-methylthiopentyl-1-phosphate enolase 1314492 mtnW 5620519 mtnW Bacillus pumilus SAFR-032 2,3-diketo-5-methylthiopentyl-1-phosphate enolase YP_001486495.1 1313242 D 315750 CDS YP_001486496.1 157692034 5620520 1314493..1315188 1 NC_009848.1 converts 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate to 1,2-dihydroxy-3-keto-5-methylthiopentene; involved in methionine salvage; 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase 1315188 mtnX 5620520 mtnX Bacillus pumilus SAFR-032 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase YP_001486496.1 1314493 D 315750 CDS YP_001486497.1 157692035 5620521 1315152..1315790 1 NC_009848.1 converts methylthioribulose-1-phosphate into 2,3-diketo-5-methylthiopentyl-1-phosphate; involved in methionine salvage; methylthioribulose-1-phosphate dehydratase 1315790 mtnB 5620521 mtnB Bacillus pumilus SAFR-032 methylthioribulose-1-phosphate dehydratase YP_001486497.1 1315152 D 315750 CDS YP_001486498.1 157692036 5620522 1315807..1316337 1 NC_009848.1 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1316337 mtnZ 5620522 mtnZ Bacillus pumilus SAFR-032 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase YP_001486498.1 1315807 D 315750 CDS YP_001486499.1 157692037 5620523 1316639..1316881 1 NC_009848.1 negative sporulation regulatory phosphatase 1316881 spo0E 5620523 spo0E Bacillus pumilus SAFR-032 negative sporulation regulatory phosphatase YP_001486499.1 1316639 D 315750 CDS YP_001486500.1 157692038 5620524 complement(1316929..1318434) 1 NC_009848.1 sporulation sensor histidine kinase D 1318434 kinD 5620524 kinD Bacillus pumilus SAFR-032 sporulation sensor histidine kinase D YP_001486500.1 1316929 R 315750 CDS YP_001486501.1 157692039 5620525 1318640..1319095 1 NC_009848.1 MarR family transcriptional regulator 1319095 ykvE 5620525 ykvE Bacillus pumilus SAFR-032 MarR family transcriptional regulator YP_001486501.1 1318640 D 315750 CDS YP_001486502.1 157692040 5620526 complement(1319125..1319889) 1 NC_009848.1 with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 1319889 motB 5620526 motB Bacillus pumilus SAFR-032 flagellar motor protein MotB YP_001486502.1 1319125 R 315750 CDS YP_001486503.1 157692041 5620527 complement(1319882..1320676) 1 NC_009848.1 With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein MotA 1320676 motA 5620527 motA Bacillus pumilus SAFR-032 flagellar motor protein MotA YP_001486503.1 1319882 R 315750 CDS YP_001486504.1 157692042 5620528 complement(1321051..1323153) 1 NC_009848.1 endopeptidase ClpE 1323153 clpE 5620528 clpE Bacillus pumilus SAFR-032 endopeptidase ClpE YP_001486504.1 1321051 R 315750 CDS YP_001486505.1 157692043 5620529 1323399..1324442 1 NC_009848.1 hypothetical protein 1324442 ykvI 5620529 ykvI Bacillus pumilus SAFR-032 hypothetical protein YP_001486505.1 1323399 D 315750 CDS YP_001486506.1 157692044 5620530 1324718..1325374 1 NC_009848.1 transcriptional regulator ExsB; transcriptional regulator 1325374 5620530 BPUM_1263 Bacillus pumilus SAFR-032 transcriptional regulator YP_001486506.1 1324718 D 315750 CDS YP_001486507.1 157692045 5620531 1325375..1325815 1 NC_009848.1 YkvK; 6-pyruvoyl-tetrahydropterin synthase 1325815 queD 5620531 queD Bacillus pumilus SAFR-032 6-pyruvoyl-tetrahydropterin synthase YP_001486507.1 1325375 D 315750 CDS YP_001486508.1 157692046 5620532 1325808..1326539 1 NC_009848.1 organic radical activating enzyme; queuosine biosynthesis protein 1326539 queE 5620532 queE Bacillus pumilus SAFR-032 queuosine biosynthesis protein YP_001486508.1 1325808 D 315750 CDS YP_001486509.1 157692047 5620533 1326555..1327052 1 NC_009848.1 NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1327052 queF 5620533 queF Bacillus pumilus SAFR-032 7-cyano-7-deazaguanine reductase YP_001486509.1 1326555 D 315750 CDS YP_001486510.1 157692048 5620534 1327277..1327477 1 NC_009848.1 hypothetical protein 1327477 5620534 BPUM_1267 Bacillus pumilus SAFR-032 hypothetical protein YP_001486510.1 1327277 D 315750 CDS YP_001486511.1 157692049 5620535 1327519..1327737 1 NC_009848.1 hypothetical protein 1327737 5620535 BPUM_1268 Bacillus pumilus SAFR-032 hypothetical protein YP_001486511.1 1327519 D 315750 CDS YP_001486512.1 157692050 5620536 complement(1327819..1328343) 1 NC_009848.1 acetyltransferase 1328343 5620536 BPUM_1269 Bacillus pumilus SAFR-032 acetyltransferase YP_001486512.1 1327819 R 315750 CDS YP_001486513.1 157692051 5620537 complement(1328490..1328678) 1 NC_009848.1 hypothetical protein 1328678 5620537 BPUM_1270 Bacillus pumilus SAFR-032 hypothetical protein YP_001486513.1 1328490 R 315750 CDS YP_001486514.1 157692052 5620538 1328846..1329040 1 NC_009848.1 hypothetical protein 1329040 5620538 BPUM_1271 Bacillus pumilus SAFR-032 hypothetical protein YP_001486514.1 1328846 D 315750 CDS YP_001486515.1 157692053 5620539 1329348..1330001 1 NC_009848.1 hypothetical protein 1330001 ykvT 5620539 ykvT Bacillus pumilus SAFR-032 hypothetical protein YP_001486515.1 1329348 D 315750 CDS YP_001486516.1 157692054 5620540 1330313..1331629 1 NC_009848.1 hypothetical protein 1331629 5620540 BPUM_1273 Bacillus pumilus SAFR-032 hypothetical protein YP_001486516.1 1330313 D 315750 CDS YP_001486517.1 157692055 5620541 1331684..1332172 1 NC_009848.1 thiol:disulfide interchange protein YkvV, thiol-disulfide oxidoreductase, StoA; stage IV spore cortex formation protein H 1332172 spoIVH 5620541 spoIVH Bacillus pumilus SAFR-032 stage IV spore cortex formation protein H YP_001486517.1 1331684 D 315750 CDS YP_001486518.1 157692056 5620542 1332466..1334385 1 NC_009848.1 P-ATPase superfamily P-type ATPase transporter 1334385 ykvW 5620542 ykvW Bacillus pumilus SAFR-032 P-ATPase superfamily P-type ATPase transporter YP_001486518.1 1332466 D 315750 CDS YP_001486519.1 157692057 5620543 1334490..1335584 1 NC_009848.1 M24B subfamily peptidase 1335584 ykvY 5620543 ykvY Bacillus pumilus SAFR-032 M24B subfamily peptidase YP_001486519.1 1334490 D 315750 CDS YP_001486520.1 157692058 5620544 1335875..1336903 1 NC_009848.1 YkvZ; transcriptional regulator 1336903 5620544 BPUM_1277 Bacillus pumilus SAFR-032 transcriptional regulator YP_001486520.1 1335875 D 315750 CDS YP_001486521.1 157692059 5620545 1336921..1337775 1 NC_009848.1 transcriptional antiterminator 1337775 glcT 5620545 glcT Bacillus pumilus SAFR-032 transcriptional antiterminator YP_001486521.1 1336921 D 315750 CDS YP_001486522.1 157692060 5620546 1337978..1340077 1 NC_009848.1 protein-N(pi)-phosphohistidine--sugar phosphotransferase; PTS family glucose/glucoside (glc) porter component IIABC 1340077 ptsG 5620546 ptsG Bacillus pumilus SAFR-032 PTS family glucose/glucoside (glc) porter component IIABC YP_001486522.1 1337978 D 315750 CDS YP_001486523.1 157692061 5620547 1340171..1340437 1 NC_009848.1 phosphocarrier protein HPr 1340437 ptsH 5620547 ptsH Bacillus pumilus SAFR-032 phosphocarrier protein HPr YP_001486523.1 1340171 D 315750 CDS YP_001486524.1 157692062 5620548 1340437..1342155 1 NC_009848.1 PTS family phosphoenolpyruvate (PEP) porter component enzyme I 1342155 ptsI 5620548 ptsI Bacillus pumilus SAFR-032 PTS family phosphoenolpyruvate (PEP) porter component enzyme I YP_001486524.1 1340437 D 315750 CDS YP_001486525.1 157692063 5620549 1342268..1342495 1 NC_009848.1 transcriptional regulator 1342495 splA 5620549 splA Bacillus pumilus SAFR-032 transcriptional regulator YP_001486525.1 1342268 D 315750 CDS YP_001486526.1 157692064 5620550 1342578..1343606 1 NC_009848.1 spore photoproduct (thymine dimer) lyase; spore photoproduct lyase 1343606 splB 5620550 splB Bacillus pumilus SAFR-032 spore photoproduct lyase YP_001486526.1 1342578 D 315750 CDS YP_001486527.1 157692065 5620551 1343724..1345685 1 NC_009848.1 methyl-accepting chemotaxis protein 1345685 mcpC 5620551 mcpC Bacillus pumilus SAFR-032 methyl-accepting chemotaxis protein YP_001486527.1 1343724 D 315750 CDS YP_001486528.1 157692066 5620552 1345760..1346545 1 NC_009848.1 3-oxoacyl-ACP reductase 1346545 5620552 BPUM_1285 Bacillus pumilus SAFR-032 3-oxoacyl-ACP reductase YP_001486528.1 1345760 D 315750 CDS YP_001486529.1 157692067 5620553 1346559..1347431 1 NC_009848.1 3-hydroxyisobutyrate dehydrogenase 1347431 ykwC 5620553 ykwC Bacillus pumilus SAFR-032 3-hydroxyisobutyrate dehydrogenase YP_001486529.1 1346559 D 315750 CDS YP_001486530.1 157692068 5620554 complement(1347738..1349093) 1 NC_009848.1 transposase 1349093 5620554 BPUM_1287 Bacillus pumilus SAFR-032 transposase YP_001486530.1 1347738 R 315750 CDS YP_001486531.1 157692069 5620555 complement(1349200..1349994) 1 NC_009848.1 possible allergen V5/Tpx-1 protein; hypothetical protein 1349994 ykwD 5620555 ykwD Bacillus pumilus SAFR-032 hypothetical protein YP_001486531.1 1349200 R 315750 CDS YP_001486532.1 157692070 5620556 1350331..1352454 1 NC_009848.1 penicillin-binding protein 1352454 5620556 BPUM_1289 Bacillus pumilus SAFR-032 penicillin-binding protein YP_001486532.1 1350331 D 315750 CDS YP_001486533.1 157692071 5620557 1352610..1354439 1 NC_009848.1 sporulation sensor histidine kinase A 1354439 kinA 5620557 kinA Bacillus pumilus SAFR-032 sporulation sensor histidine kinase A YP_001486533.1 1352610 D 315750 CDS YP_001486534.1 157692072 5620558 complement(1354465..1355634) 1 NC_009848.1 aminotransferase A 1355634 patA 5620558 patA Bacillus pumilus SAFR-032 aminotransferase A YP_001486534.1 1354465 R 315750 CDS YP_001486535.1 157692073 5620559 1355926..1356810 1 NC_009848.1 hypothetical protein 1356810 5620559 BPUM_1292 Bacillus pumilus SAFR-032 hypothetical protein YP_001486535.1 1355926 D 315750 CDS YP_001486536.1 157692074 5620560 complement(1356872..1357024) 1 NC_009848.1 hypothetical protein 1357024 5620560 BPUM_1293 Bacillus pumilus SAFR-032 hypothetical protein YP_001486536.1 1356872 R 315750 CDS YP_001486537.1 157692075 5620561 1357326..1357865 1 NC_009848.1 RDD family protein 1357865 5620561 BPUM_1294 Bacillus pumilus SAFR-032 RDD family protein YP_001486537.1 1357326 D 315750 CDS YP_001486538.1 157692076 5620562 1357991..1359301 1 NC_009848.1 major facilitator superfamily transporter 1359301 yxiO 5620562 yxiO Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001486538.1 1357991 D 315750 CDS YP_001486539.1 157692077 5620563 1359375..1360283 1 NC_009848.1 chemotaxis protein CheV 1360283 cheV 5620563 cheV Bacillus pumilus SAFR-032 chemotaxis protein CheV YP_001486539.1 1359375 D 315750 CDS YP_001486540.1 157692078 5620564 complement(1360317..1360778) 1 NC_009848.1 hypothetical protein 1360778 ykyB 5620564 ykyB Bacillus pumilus SAFR-032 hypothetical protein YP_001486540.1 1360317 R 315750 CDS YP_001486541.1 157692079 5620565 complement(1361279..1361494) 1 NC_009848.1 hypothetical protein 1361494 5620565 BPUM_1298 Bacillus pumilus SAFR-032 hypothetical protein YP_001486541.1 1361279 R 315750 CDS YP_001486542.1 157692080 5620566 1361661..1361837 1 NC_009848.1 hypothetical protein 1361837 5620566 BPUM_1299 Bacillus pumilus SAFR-032 hypothetical protein YP_001486542.1 1361661 D 315750 CDS YP_001486543.1 157692081 5620567 complement(1361902..1363098) 1 NC_009848.1 major facilitator superfamily macrolide:cation symporter 1363098 ykuC 5620567 ykuC Bacillus pumilus SAFR-032 major facilitator superfamily macrolide:cation symporter YP_001486543.1 1361902 R 315750 CDS YP_001486544.1 157692082 5620568 complement(1363253..1363750) 1 NC_009848.1 peptidoglycan binding protein 1363750 ykuD 5620568 ykuD Bacillus pumilus SAFR-032 peptidoglycan binding protein YP_001486544.1 1363253 R 315750 CDS YP_001486545.1 157692083 5620569 complement(1363907..1364764) 1 NC_009848.1 phosphoesterase 1364764 ykuE 5620569 ykuE Bacillus pumilus SAFR-032 phosphoesterase YP_001486545.1 1363907 R 315750 CDS YP_001486546.1 157692084 5620570 1364901..1365665 1 NC_009848.1 short chain dehydrogenase 1365665 ykuF 5620570 ykuF Bacillus pumilus SAFR-032 short chain dehydrogenase YP_001486546.1 1364901 D 315750 CDS YP_001486547.1 157692085 5620571 1365730..1366950 1 NC_009848.1 EAL domain-containing protein 1366950 ykuI 5620571 ykuI Bacillus pumilus SAFR-032 EAL domain-containing protein YP_001486547.1 1365730 D 315750 CDS YP_001486548.1 157692086 5620572 1367243..1368139 1 NC_009848.1 manganese (Mn) catalase 1368139 5620572 BPUM_1305 Bacillus pumilus SAFR-032 manganese (Mn) catalase YP_001486548.1 1367243 D 315750 CDS YP_001486549.1 157692087 5620573 1368323..1368565 1 NC_009848.1 hypothetical protein 1368565 ykuJ 5620573 ykuJ Bacillus pumilus SAFR-032 hypothetical protein YP_001486549.1 1368323 D 315750 CDS YP_001486550.1 157692088 5620574 1368692..1369228 1 NC_009848.1 hypothetical protein 1369228 ykuK 5620574 ykuK Bacillus pumilus SAFR-032 hypothetical protein YP_001486550.1 1368692 D 315750 CDS YP_001486551.1 157692089 5620575 1369378..1369569 1 NC_009848.1 hypothetical protein 1369569 ykzF 5620575 ykzF Bacillus pumilus SAFR-032 hypothetical protein YP_001486551.1 1369378 D 315750 CDS YP_001486552.1 157692090 5620576 1369717..1370160 1 NC_009848.1 hypothetical protein 1370160 ykuL 5620576 ykuL Bacillus pumilus SAFR-032 hypothetical protein YP_001486552.1 1369717 D 315750 CDS YP_001486553.1 157692091 5620577 1370256..1371137 1 NC_009848.1 LysR family transcriptional regulator 1371137 ccpC 5620577 ccpC Bacillus pumilus SAFR-032 LysR family transcriptional regulator YP_001486553.1 1370256 D 315750 CDS YP_001486554.1 157692092 5620578 1371224..1371646 1 NC_009848.1 hypothetical protein 1371646 5620578 BPUM_1311 Bacillus pumilus SAFR-032 hypothetical protein YP_001486554.1 1371224 D 315750 CDS YP_001486555.1 157692093 5620579 1371833..1372309 1 NC_009848.1 An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 1372309 5620579 BPUM_1312 Bacillus pumilus SAFR-032 flavodoxin YP_001486555.1 1371833 D 315750 CDS YP_001486556.1 157692094 5620580 1372299..1373192 1 NC_009848.1 BNR repeat-containing protein 1373192 5620580 BPUM_1313 Bacillus pumilus SAFR-032 BNR repeat-containing protein YP_001486556.1 1372299 D 315750 CDS YP_001486557.1 157692095 5620581 1373209..1373667 1 NC_009848.1 flavodoxin 1373667 5620581 BPUM_1314 Bacillus pumilus SAFR-032 flavodoxin YP_001486557.1 1373209 D 315750 CDS YP_001486558.1 157692096 5620582 1373777..1374487 1 NC_009848.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 1374487 dapD 5620582 dapD Bacillus pumilus SAFR-032 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_001486558.1 1373777 D 315750 CDS YP_001486559.1 157692097 5620583 1374568..1375698 1 NC_009848.1 hippurate hydrolase; M20D subfamily peptidase 1375698 ykuR 5620583 ykuR Bacillus pumilus SAFR-032 M20D subfamily peptidase YP_001486559.1 1374568 D 315750 CDS YP_001486560.1 157692098 5620584 1375749..1375991 1 NC_009848.1 hypothetical protein 1375991 ykuS 5620584 ykuS Bacillus pumilus SAFR-032 hypothetical protein YP_001486560.1 1375749 D 315750 CDS YP_001486561.1 157692099 5620585 complement(1376018..1376827) 1 NC_009848.1 MscS family small conductance mechanosenstive ion channel protein 1376827 ykuT 5620585 ykuT Bacillus pumilus SAFR-032 MscS family small conductance mechanosenstive ion channel protein YP_001486561.1 1376018 R 315750 CDS YP_001486562.1 157692100 5620586 1377099..1377641 1 NC_009848.1 peroxiredoxin YkuU 1377641 ykuU 5620586 ykuU Bacillus pumilus SAFR-032 peroxiredoxin YkuU YP_001486562.1 1377099 D 315750 CDS YP_001486563.1 157692101 5620587 1377724..1378182 1 NC_009848.1 thioredoxin 1378182 ykuV 5620587 ykuV Bacillus pumilus SAFR-032 thioredoxin YP_001486563.1 1377724 D 315750 CDS YP_001486564.1 157692102 5620588 1378653..1379234 1 NC_009848.1 comK repressor 1379234 rok 5620588 rok Bacillus pumilus SAFR-032 comK repressor YP_001486564.1 1378653 D 315750 CDS YP_001486565.1 157692103 5620589 complement(1379285..1380202) 1 NC_009848.1 sigmaE regulated sporulation protein 1380202 yknT 5620589 yknT Bacillus pumilus SAFR-032 sigmaE regulated sporulation protein YP_001486565.1 1379285 R 315750 CDS YP_001486566.1 157692104 5620590 1380287..1380868 1 NC_009848.1 molybdopterin-guanine dinucleotide biosynthesis protein MobA 1380868 mobA 5620590 mobA Bacillus pumilus SAFR-032 molybdopterin-guanine dinucleotide biosynthesis protein MobA YP_001486566.1 1380287 D 315750 CDS YP_001486567.1 157692105 5620591 1380898..1381914 1 NC_009848.1 catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways; thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein 1381914 moeB 5620591 moeB Bacillus pumilus SAFR-032 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein YP_001486567.1 1380898 D 315750 CDS YP_001486568.1 157692106 5620592 1381924..1383201 1 NC_009848.1 molybdopterin biosynthesis protein 1383201 moeA 5620592 moeA Bacillus pumilus SAFR-032 molybdopterin biosynthesis protein YP_001486568.1 1381924 D 315750 CDS YP_001486569.1 157692107 5620593 1383183..1383707 1 NC_009848.1 molybdopterin-guanine dinucleotide biosynthesis protein MobB 1383707 mobB 5620593 mobB Bacillus pumilus SAFR-032 molybdopterin-guanine dinucleotide biosynthesis protein MobB YP_001486569.1 1383183 D 315750 CDS YP_001486570.1 157692108 5620594 1383704..1384195 1 NC_009848.1 molybdopterin converting factor large subunit 1384195 moaE 5620594 moaE Bacillus pumilus SAFR-032 molybdopterin converting factor large subunit YP_001486570.1 1383704 D 315750 CDS YP_001486571.1 157692109 5620595 1384188..1384421 1 NC_009848.1 molybdopterin converting factor small subunit 1384421 moaD 5620595 moaD Bacillus pumilus SAFR-032 molybdopterin converting factor small subunit YP_001486571.1 1384188 D 315750 CDS YP_001486572.1 157692110 5620596 complement(1384468..1384845) 1 NC_009848.1 hypothetical protein 1384845 5620596 BPUM_1329 Bacillus pumilus SAFR-032 hypothetical protein YP_001486572.1 1384468 R 315750 CDS YP_001486573.1 157692111 5620597 1385362..1385988 1 NC_009848.1 hypothetical protein 1385988 yknW 5620597 yknW Bacillus pumilus SAFR-032 hypothetical protein YP_001486573.1 1385362 D 315750 CDS YP_001486574.1 157692112 5620598 1385998..1387104 1 NC_009848.1 hypothetical protein 1387104 yknX 5620598 yknX Bacillus pumilus SAFR-032 hypothetical protein YP_001486574.1 1385998 D 315750 CDS YP_001486575.1 157692113 5620599 1387101..1387802 1 NC_009848.1 ABC transporter ATP-binding protein 1387802 yknY 5620599 yknY Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001486575.1 1387101 D 315750 CDS YP_001486576.1 157692114 5620600 1387789..1388982 1 NC_009848.1 ABC transporter ATP-binding protein 1388982 yknZ 5620600 yknZ Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001486576.1 1387789 D 315750 CDS YP_001486577.1 157692115 5620601 1389304..1390059 1 NC_009848.1 DeoR family transcriptional regulator 1390059 fruR 5620601 fruR Bacillus pumilus SAFR-032 DeoR family transcriptional regulator YP_001486577.1 1389304 D 315750 CDS YP_001486578.1 157692116 5620602 1390056..1390967 1 NC_009848.1 1-phosphofructokinase 1390967 fruK 5620602 fruK Bacillus pumilus SAFR-032 1-phosphofructokinase YP_001486578.1 1390056 D 315750 CDS YP_001486579.1 157692117 5620603 1390981..1392876 1 NC_009848.1 PTS family fructose/mannitol porter component IIBC 1392876 fruA 5620603 fruA Bacillus pumilus SAFR-032 PTS family fructose/mannitol porter component IIBC YP_001486579.1 1390981 D 315750 CDS YP_001486580.1 157692118 5620604 1393055..1393660 1 NC_009848.1 signal peptidase I 1393660 sipT 5620604 sipT Bacillus pumilus SAFR-032 signal peptidase I YP_001486580.1 1393055 D 315750 CDS YP_001486581.1 157692119 5620605 complement(1393725..1394000) 1 NC_009848.1 hypothetical protein 1394000 ykoA 5620605 ykoA Bacillus pumilus SAFR-032 hypothetical protein YP_001486581.1 1393725 R 315750 CDS YP_001486582.1 157692120 5620606 1394144..1395763 1 NC_009848.1 ABC transporter ATP-binding protein 1395763 ykpA 5620606 ykpA Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001486582.1 1394144 D 315750 CDS YP_001486583.1 157692121 5620607 1395788..1396003 1 NC_009848.1 hypothetical protein 1396003 5620607 BPUM_1340 Bacillus pumilus SAFR-032 hypothetical protein YP_001486583.1 1395788 D 315750 CDS YP_001486584.1 157692122 5620608 complement(1396000..1397232) 1 NC_009848.1 aminopeptidase 1397232 ampS 5620608 ampS Bacillus pumilus SAFR-032 aminopeptidase YP_001486584.1 1396000 R 315750 CDS YP_001486585.1 157692123 5620609 complement(1397339..1397470) 1 NC_009848.1 hypothetical protein 1397470 ykpC 5620609 ykpC Bacillus pumilus SAFR-032 hypothetical protein YP_001486585.1 1397339 R 315750 CDS YP_001486586.1 157692124 5620610 complement(1397545..1398552) 1 NC_009848.1 rod-share determining protein MreBH 1398552 mreBH 5620610 mreBH Bacillus pumilus SAFR-032 rod-share determining protein MreBH YP_001486586.1 1397545 R 315750 CDS YP_001486587.1 157692125 5620611 1398828..1399106 1 NC_009848.1 transcriptional regulator of stationary/sporulation gene expression YlxT YzaA; SpoVT/AbrB family transcriptional regulator 1399106 abh 5620611 abh Bacillus pumilus SAFR-032 SpoVT/AbrB family transcriptional regulator YP_001486587.1 1398828 D 315750 CDS YP_001486588.1 157692126 5620612 1399198..1400559 1 NC_009848.1 sensor histidine kinase 1400559 kinC 5620612 kinC Bacillus pumilus SAFR-032 sensor histidine kinase YP_001486588.1 1399198 D 315750 CDS YP_001486589.1 157692127 5620613 1400564..1401400 1 NC_009848.1 hypothetical protein 1401400 5620613 BPUM_1346 Bacillus pumilus SAFR-032 hypothetical protein YP_001486589.1 1400564 D 315750 CDS YP_001486590.1 157692128 5620614 1401438..1402106 1 NC_009848.1 Trk family K+ transporter NAD+ binding protein 1402106 ktrC 5620614 ktrC Bacillus pumilus SAFR-032 Trk family K+ transporter NAD+ binding protein YP_001486590.1 1401438 D 315750 CDS YP_001486591.1 157692129 5620615 1402369..1404099 1 NC_009848.1 adenine deaminase 1404099 adeC 5620615 adeC Bacillus pumilus SAFR-032 adenine deaminase YP_001486591.1 1402369 D 315750 CDS YP_001486592.1 157692130 5620616 complement(1404199..1405866) 1 NC_009848.1 metallo-beta lactamase superfamily hydrolase 1405866 ykqC 5620616 ykqC Bacillus pumilus SAFR-032 metallo-beta lactamase superfamily hydrolase YP_001486592.1 1404199 R 315750 CDS YP_001486593.1 157692131 5620617 complement(1405872..1406081) 1 NC_009848.1 hypothetical protein 1406081 ykzG 5620617 ykzG Bacillus pumilus SAFR-032 hypothetical protein YP_001486593.1 1405872 R 315750 CDS YP_001486594.1 157692132 5620618 1406477..1407256 1 NC_009848.1 HAD hydrolase 1407256 ykrA 5620618 ykrA Bacillus pumilus SAFR-032 HAD hydrolase YP_001486594.1 1406477 D 315750 CDS YP_001486595.1 157692133 5620619 complement(1407496..1408053) 1 NC_009848.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1408053 def 5620619 def Bacillus pumilus SAFR-032 peptide deformylase YP_001486595.1 1407496 R 315750 CDS YP_001486596.1 157692134 5620620 complement(1408166..1408534) 1 NC_009848.1 hypothetical protein 1408534 5620620 BPUM_1353 Bacillus pumilus SAFR-032 hypothetical protein YP_001486596.1 1408166 R 315750 CDS YP_001486597.1 157692135 5620621 1408589..1409257 1 NC_009848.1 YkrC; lipoprotein 1409257 ykyA 5620621 ykyA Bacillus pumilus SAFR-032 lipoprotein YP_001486597.1 1408589 D 315750 CDS YP_001486598.1 157692136 5620622 1409668..1410783 1 NC_009848.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 1410783 pdhA 5620622 pdhA Bacillus pumilus SAFR-032 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha YP_001486598.1 1409668 D 315750 CDS YP_001486599.1 157692137 5620623 1410787..1411764 1 NC_009848.1 AceB; pyruvate dehydrogenase (acetyl-transferring) E1 beta subunit 1411764 pdhB 5620623 pdhB Bacillus pumilus SAFR-032 pyruvate dehydrogenase (acetyl-transferring) E1 beta subunit YP_001486599.1 1410787 D 315750 CDS YP_001486600.1 157692138 5620624 1411872..1413215 1 NC_009848.1 AceC; branched-chain alpha-keto acid dehydrogenase subunit E2 1413215 pdhC 5620624 pdhC Bacillus pumilus SAFR-032 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_001486600.1 1411872 D 315750 CDS YP_001486601.1 157692139 5620625 1413220..1414632 1 NC_009848.1 E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1414632 pdhD 5620625 pdhD Bacillus pumilus SAFR-032 dihydrolipoamide dehydrogenase YP_001486601.1 1413220 D 315750 CDS YP_001486602.1 157692140 5620626 complement(1414749..1415102) 1 NC_009848.1 Pal; peptidoglycan-associated protein 1415102 slp 5620626 slp Bacillus pumilus SAFR-032 peptidoglycan-associated protein YP_001486602.1 1414749 R 315750 CDS YP_001486603.1 157692141 5620627 1415101..1415334 1 NC_009848.1 hypothetical protein 1415334 5620627 BPUM_1360 Bacillus pumilus SAFR-032 hypothetical protein YP_001486603.1 1415101 D 315750 CDS YP_001486604.1 157692142 5620628 complement(1415609..1417099) 1 NC_009848.1 Cad; lysine decarboxylase 1417099 speA 5620628 speA Bacillus pumilus SAFR-032 lysine decarboxylase YP_001486604.1 1415609 R 315750 CDS YP_001486605.1 157692143 5620629 1417272..1417541 1 NC_009848.1 hypothetical protein 1417541 yktA 5620629 yktA Bacillus pumilus SAFR-032 hypothetical protein YP_001486605.1 1417272 D 315750 CDS YP_001486606.1 157692144 5620630 complement(1419100..1419735) 1 NC_009848.1 YktB; hypothetical protein 1419735 5620630 BPUM_1363 Bacillus pumilus SAFR-032 hypothetical protein YP_001486606.1 1419100 R 315750 CDS YP_001486607.1 157692145 5620631 1420024..1420212 1 NC_009848.1 hypothetical protein 1420212 5620631 BPUM_1364 Bacillus pumilus SAFR-032 hypothetical protein YP_001486607.1 1420024 D 315750 CDS YP_001486608.1 157692146 5620632 1420346..1421152 1 NC_009848.1 inositol-phosphate phosphatase 1421152 suhB 5620632 suhB Bacillus pumilus SAFR-032 inositol-phosphate phosphatase YP_001486608.1 1420346 D 315750 CDS YP_001486609.1 157692147 5620633 complement(1421309..1421944) 1 NC_009848.1 hypothetical protein 1421944 ylaE 5620633 ylaE Bacillus pumilus SAFR-032 hypothetical protein YP_001486609.1 1421309 R 315750 CDS YP_001486610.1 157692148 5620634 complement(1422218..1422397) 1 NC_009848.1 hypothetical protein 1422397 ylaF 5620634 ylaF Bacillus pumilus SAFR-032 hypothetical protein YP_001486610.1 1422218 R 315750 CDS YP_001486611.1 157692149 5620635 1422511..1424349 1 NC_009848.1 YlaG; GTP-binding protein 1424349 typA 5620635 typA Bacillus pumilus SAFR-032 GTP-binding protein YP_001486611.1 1422511 D 315750 CDS YP_001486612.1 157692150 5620636 1424404..1424727 1 NC_009848.1 hypothetical protein 1424727 ylaH 5620636 ylaH Bacillus pumilus SAFR-032 hypothetical protein YP_001486612.1 1424404 D 315750 CDS YP_001486613.1 157692151 5620637 complement(1424759..1424989) 1 NC_009848.1 hypothetical protein 1424989 ylaI 5620637 ylaI Bacillus pumilus SAFR-032 hypothetical protein YP_001486613.1 1424759 R 315750 CDS YP_001486614.1 157692152 5620638 complement(1425091..1425708) 1 NC_009848.1 sporulation lipoprotein YlaJ 1425708 ylaJ 5620638 ylaJ Bacillus pumilus SAFR-032 sporulation lipoprotein YlaJ YP_001486614.1 1425091 R 315750 CDS YP_001486615.1 157692153 5620639 1425879..1427171 1 NC_009848.1 YlaK; phosphate starvation-induced protein PhoH 1427171 phoH1 5620639 phoH1 Bacillus pumilus SAFR-032 phosphate starvation-induced protein PhoH YP_001486615.1 1425879 D 315750 CDS YP_001486616.1 157692154 5620640 complement(1427187..1427666) 1 NC_009848.1 hypothetical protein 1427666 ylaL 5620640 ylaL Bacillus pumilus SAFR-032 hypothetical protein YP_001486616.1 1427187 R 315750 CDS YP_001486617.1 157692155 5620641 1427787..1428716 1 NC_009848.1 catalyzes the formation of glutamate from glutamine; glutaminase 1428716 gls 5620641 gls Bacillus pumilus SAFR-032 glutaminase YP_001486617.1 1427787 D 315750 CDS YP_001486618.1 157692156 5620642 1428839..1429120 1 NC_009848.1 depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; putative ligand binding protein; hypothetical protein 1429120 ylaN 5620642 ylaN Bacillus pumilus SAFR-032 hypothetical protein YP_001486618.1 1428839 D 315750 CDS YP_001486619.1 157692157 5620643 1429327..1430538 1 NC_009848.1 cell division protein FtsW 1430538 ftsW 5620643 ftsW Bacillus pumilus SAFR-032 cell division protein FtsW YP_001486619.1 1429327 D 315750 CDS YP_001486620.1 157692158 5620644 1430619..1434065 1 NC_009848.1 biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 1434065 pycA 5620644 pycA Bacillus pumilus SAFR-032 pyruvate carboxylase YP_001486620.1 1430619 D 315750 CDS YP_001486621.1 157692159 5620645 1434198..1435598 1 NC_009848.1 deoxyribodipyrimidine photo-lyase 1435598 phrB 5620645 phrB Bacillus pumilus SAFR-032 deoxyribodipyrimidine photo-lyase YP_001486621.1 1434198 D 315750 CDS YP_001486622.1 157692160 5620646 complement(1435639..1436562) 1 NC_009848.1 heme-containing membrane protein; cytochrome c oxidase assembly protein 1436562 ctaA 5620646 ctaA Bacillus pumilus SAFR-032 cytochrome c oxidase assembly protein YP_001486622.1 1435639 R 315750 CDS YP_001486623.1 157692161 5620647 1436956..1437873 1 NC_009848.1 converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 1437873 ctaB 5620647 ctaB Bacillus pumilus SAFR-032 protoheme IX farnesyltransferase YP_001486623.1 1436956 D 315750 CDS YP_001486624.1 157692162 5620648 1438152..1439219 1 NC_009848.1 cytochrome-c oxidase subunit II 1439219 ctaC 5620648 ctaC Bacillus pumilus SAFR-032 cytochrome-c oxidase subunit II YP_001486624.1 1438152 D 315750 CDS YP_001486625.1 157692163 5620649 1439391..1441262 1 NC_009848.1 cytochrome-c oxidase subunit I 1441262 ctaD 5620649 ctaD Bacillus pumilus SAFR-032 cytochrome-c oxidase subunit I YP_001486625.1 1439391 D 315750 CDS YP_001486626.1 157692164 5620650 1441262..1441882 1 NC_009848.1 cytochrome-c oxidase subunit III 1441882 ctaE 5620650 ctaE Bacillus pumilus SAFR-032 cytochrome-c oxidase subunit III YP_001486626.1 1441262 D 315750 CDS YP_001486627.1 157692165 5620651 1441885..1442214 1 NC_009848.1 cytochrome-c oxidase subunit IV 1442214 ctaF 5620651 ctaF Bacillus pumilus SAFR-032 cytochrome-c oxidase subunit IV YP_001486627.1 1441885 D 315750 CDS YP_001486628.1 157692166 5620652 1442245..1443123 1 NC_009848.1 cytochrome c oxidase subunit 1443123 ctaG 5620652 ctaG Bacillus pumilus SAFR-032 cytochrome c oxidase subunit YP_001486628.1 1442245 D 315750 CDS YP_001486629.1 157692167 5620653 complement(1443155..1443520) 1 NC_009848.1 hypothetical protein 1443520 ylbA 5620653 ylbA Bacillus pumilus SAFR-032 hypothetical protein YP_001486629.1 1443155 R 315750 CDS YP_001486630.1 157692168 5620654 1443682..1444104 1 NC_009848.1 cystathionine beta-synthase 1444104 ylbB 5620654 ylbB Bacillus pumilus SAFR-032 cystathionine beta-synthase YP_001486630.1 1443682 D 315750 CDS YP_001486631.1 157692169 5620655 1444229..1445272 1 NC_009848.1 hypothetical protein 1445272 ylbC 5620655 ylbC Bacillus pumilus SAFR-032 hypothetical protein YP_001486631.1 1444229 D 315750 CDS YP_001486632.1 157692170 5620656 1445381..1445794 1 NC_009848.1 hypothetical protein 1445794 ylbD 5620656 ylbD Bacillus pumilus SAFR-032 hypothetical protein YP_001486632.1 1445381 D 315750 CDS YP_001486633.1 157692171 5620657 1445814..1446062 1 NC_009848.1 hypothetical protein 1446062 ylbE 5620657 ylbE Bacillus pumilus SAFR-032 hypothetical protein YP_001486633.1 1445814 D 315750 CDS YP_001486634.1 157692172 5620658 1446135..1446542 1 NC_009848.1 hypothetical protein 1446542 5620658 BPUM_1391 Bacillus pumilus SAFR-032 hypothetical protein YP_001486634.1 1446135 D 315750 CDS YP_001486635.1 157692173 5620659 1446600..1447049 1 NC_009848.1 hypothetical protein 1447049 ylbF 5620659 ylbF Bacillus pumilus SAFR-032 hypothetical protein YP_001486635.1 1446600 D 315750 CDS YP_001486636.1 157692174 5620660 1447116..1447388 1 NC_009848.1 hypothetical protein 1447388 ylbG 5620660 ylbG Bacillus pumilus SAFR-032 hypothetical protein YP_001486636.1 1447116 D 315750 CDS YP_001486637.1 157692175 5620661 1447699..1448256 1 NC_009848.1 adenine-specific DNA methylase; site-specific DNA-methyltransferase (adenine-specific) 1448256 ylbH 5620661 ylbH Bacillus pumilus SAFR-032 site-specific DNA-methyltransferase (adenine-specific) YP_001486637.1 1447699 D 315750 CDS YP_001486638.1 157692176 5620662 1448260..1448742 1 NC_009848.1 Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1448742 coaD 5620662 coaD Bacillus pumilus SAFR-032 phosphopantetheine adenylyltransferase YP_001486638.1 1448260 D 315750 CDS YP_001486639.1 157692177 5620663 complement(1448756..1449964) 1 NC_009848.1 sporulation integral membrane protein YlbJ 1449964 ylbJ 5620663 ylbJ Bacillus pumilus SAFR-032 sporulation integral membrane protein YlbJ YP_001486639.1 1448756 R 315750 CDS YP_001486640.1 157692178 5620664 1450123..1450902 1 NC_009848.1 possible MFS family major facilitator transporter; alpha/beta fold family hydrolase 1450902 ylbK 5620664 ylbK Bacillus pumilus SAFR-032 alpha/beta fold family hydrolase YP_001486640.1 1450123 D 315750 CDS YP_001486641.1 157692179 5620665 1450907..1451935 1 NC_009848.1 PDZ domain protein YlbL; peptidase 1451935 ylbL 5620665 ylbL Bacillus pumilus SAFR-032 peptidase YP_001486641.1 1450907 D 315750 CDS YP_001486642.2 228912748 5620666 complement(1451974..1453218) 1 NC_009848.1 hypothetical protein 1453218 ylbM 5620666 ylbM Bacillus pumilus SAFR-032 hypothetical protein YP_001486642.2 1451974 R 315750 CDS YP_001486643.1 157692181 5620667 1453425..1453943 1 NC_009848.1 hypothetical protein 1453943 ylbN 5620667 ylbN Bacillus pumilus SAFR-032 hypothetical protein YP_001486643.1 1453425 D 315750 CDS YP_001486644.1 157692182 5620668 1453965..1454138 1 NC_009848.1 some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1454138 rpmF 5620668 rpmF Bacillus pumilus SAFR-032 50S ribosomal protein L32 YP_001486644.1 1453965 D 315750 CDS YP_001486645.1 157692183 5620669 1454277..1454816 1 NC_009848.1 DNA binding protein YlbO; putative spore coat protein regulator protein YlbO 1454816 gerR 5620669 gerR Bacillus pumilus SAFR-032 putative spore coat protein regulator protein YlbO YP_001486645.1 1454277 D 315750 CDS YP_001486646.1 157692184 5620670 complement(1454863..1455342) 1 NC_009848.1 hypothetical protein 1455342 ylbP 5620670 ylbP Bacillus pumilus SAFR-032 hypothetical protein YP_001486646.1 1454863 R 315750 CDS YP_001486647.1 157692185 5620671 1455551..1456450 1 NC_009848.1 ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 1456450 ylbQ 5620671 ylbQ Bacillus pumilus SAFR-032 2-dehydropantoate 2-reductase YP_001486647.1 1455551 D 315750 CDS YP_001486648.1 157692186 5620672 1456515..1458134 1 NC_009848.1 hypothetical protein 1458134 yllA 5620672 yllA Bacillus pumilus SAFR-032 hypothetical protein YP_001486648.1 1456515 D 315750 CDS YP_001486649.1 157692187 5620673 1458308..1458694 1 NC_009848.1 YllB; hypothetical protein 1458694 mraZ 5620673 mraZ Bacillus pumilus SAFR-032 hypothetical protein YP_001486649.1 1458308 D 315750 CDS YP_001486650.1 157692188 5620674 1458761..1459693 1 NC_009848.1 S-adenosyl-methyltransferase MraW 1459693 mraW 5620674 mraW Bacillus pumilus SAFR-032 S-adenosyl-methyltransferase MraW YP_001486650.1 1458761 D 315750 CDS YP_001486651.1 157692189 5620675 1459731..1460078 1 NC_009848.1 cell division protein 1460078 ftsL 5620675 ftsL Bacillus pumilus SAFR-032 cell division protein YP_001486651.1 1459731 D 315750 CDS YP_001486652.1 157692190 5620676 1460086..1462236 1 NC_009848.1 penicillin binding protein PbpB; peptidoglycan glycosyltransferase 1462236 ftsI 5620676 ftsI Bacillus pumilus SAFR-032 peptidoglycan glycosyltransferase YP_001486652.1 1460086 D 315750 CDS YP_001486653.1 157692191 5620677 1462363..1464282 1 NC_009848.1 stage V sporulation protein D 1464282 spoVD 5620677 spoVD Bacillus pumilus SAFR-032 stage V sporulation protein D YP_001486653.1 1462363 D 315750 CDS YP_001486654.1 157692192 5620678 1464489..1465970 1 NC_009848.1 involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1465970 murE 5620678 murE Bacillus pumilus SAFR-032 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_001486654.1 1464489 D 315750 CDS YP_001486655.1 157692193 5620679 1466106..1467080 1 NC_009848.1 First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1467080 mraY 5620679 mraY Bacillus pumilus SAFR-032 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001486655.1 1466106 D 315750 CDS YP_001486656.1 157692194 5620680 1467081..1468436 1 NC_009848.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1468436 murD 5620680 murD Bacillus pumilus SAFR-032 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase YP_001486656.1 1467081 D 315750 CDS YP_001486657.1 157692195 5620681 1468496..1469596 1 NC_009848.1 stage V sporulation protein E 1469596 spoVE 5620681 spoVE Bacillus pumilus SAFR-032 stage V sporulation protein E YP_001486657.1 1468496 D 315750 CDS YP_001486658.1 157692196 5620682 1469794..1470888 1 NC_009848.1 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1470888 murG 5620682 murG Bacillus pumilus SAFR-032 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase YP_001486658.1 1469794 D 315750 CDS YP_001486659.1 157692197 5620683 1470920..1471831 1 NC_009848.1 catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1471831 murB 5620683 murB Bacillus pumilus SAFR-032 UDP-N-acetylenolpyruvoylglucosamine reductase YP_001486659.1 1470920 D 315750 CDS YP_001486660.1 157692198 5620684 1471959..1472738 1 NC_009848.1 cell-division initiation protein 1472738 divIB 5620684 divIB Bacillus pumilus SAFR-032 cell-division initiation protein YP_001486660.1 1471959 D 315750 CDS YP_001486661.1 157692199 5620685 1472735..1473424 1 NC_009848.1 hypothetical protein 1473424 ylxW 5620685 ylxW Bacillus pumilus SAFR-032 hypothetical protein YP_001486661.1 1472735 D 315750 CDS YP_001486662.1 157692200 5620686 1473445..1474170 1 NC_009848.1 hypothetical protein 1474170 ylxX 5620686 ylxX Bacillus pumilus SAFR-032 hypothetical protein YP_001486662.1 1473445 D 315750 CDS YP_001486663.1 157692201 5620687 1474170..1474538 1 NC_009848.1 hypothetical protein 1474538 sbp 5620687 sbp Bacillus pumilus SAFR-032 hypothetical protein YP_001486663.1 1474170 D 315750 CDS YP_001486664.1 157692202 5620688 1474698..1476020 1 NC_009848.1 cell division ATP-binding protein FtsA 1476020 ftsA 5620688 ftsA Bacillus pumilus SAFR-032 cell division ATP-binding protein FtsA YP_001486664.1 1474698 D 315750 CDS YP_001486665.1 157692203 5620689 1476054..1477199 1 NC_009848.1 GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1477199 ftsZ 5620689 ftsZ Bacillus pumilus SAFR-032 cell division protein FtsZ YP_001486665.1 1476054 D 315750 CDS YP_001486666.1 157692204 5620690 1477491..1480967 1 NC_009848.1 bifunctional bacillopeptidase F/hypothetical protein; peptidase 1480967 5620690 BPUM_1423 Bacillus pumilus SAFR-032 peptidase YP_001486666.1 1477491 D 315750 CDS YP_001486667.1 157692205 5620691 1480997..1481188 1 NC_009848.1 hypothetical protein 1481188 5620691 BPUM_1424 Bacillus pumilus SAFR-032 hypothetical protein YP_001486667.1 1480997 D 315750 CDS YP_001486668.1 157692206 5620692 1481201..1482130 1 NC_009848.1 stage II sporulation U4 family membrane protease 1482130 spoIIGA 5620692 spoIIGA Bacillus pumilus SAFR-032 stage II sporulation U4 family membrane protease YP_001486668.1 1481201 D 315750 CDS YP_001486669.1 157692207 5620693 1482189..1482908 1 NC_009848.1 sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; sporulation sigma factor SigE 1482908 sigE 5620693 sigE Bacillus pumilus SAFR-032 sporulation sigma factor SigE YP_001486669.1 1482189 D 315750 CDS YP_001486670.1 157692208 5620694 1483051..1483830 1 NC_009848.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin; sporulation sigma factor SigG 1483830 sigG 5620694 sigG Bacillus pumilus SAFR-032 sporulation sigma factor SigG YP_001486670.1 1483051 D 315750 CDS YP_001486671.1 157692209 5620695 1483982..1484920 1 NC_009848.1 transcriptional regulator 1484920 5620695 BPUM_1428 Bacillus pumilus SAFR-032 transcriptional regulator YP_001486671.1 1483982 D 315750 CDS YP_001486672.1 157692210 5620696 1485165..1486409 1 NC_009848.1 homoserine dehydrogenase 1486409 5620696 BPUM_1429 Bacillus pumilus SAFR-032 homoserine dehydrogenase YP_001486672.1 1485165 D 315750 CDS YP_001486673.1 157692211 5620697 1486422..1486853 1 NC_009848.1 hypothetical protein 1486853 5620697 BPUM_1430 Bacillus pumilus SAFR-032 hypothetical protein YP_001486673.1 1486422 D 315750 CDS YP_001486674.1 157692212 5620698 1486872..1487402 1 NC_009848.1 PTS family glucitol (Glu) porter component IIC 1487402 5620698 BPUM_1431 Bacillus pumilus SAFR-032 PTS family glucitol (Glu) porter component IIC YP_001486674.1 1486872 D 315750 CDS YP_001486675.1 157692213 5620699 1487416..1488426 1 NC_009848.1 PTS family glucitol (Glu) porter component IIB 1488426 5620699 BPUM_1432 Bacillus pumilus SAFR-032 PTS family glucitol (Glu) porter component IIB YP_001486675.1 1487416 D 315750 CDS YP_001486676.1 157692214 5620700 1488453..1488809 1 NC_009848.1 PTS family glucitol (Glu) porter component IIA 1488809 5620700 BPUM_1433 Bacillus pumilus SAFR-032 PTS family glucitol (Glu) porter component IIA YP_001486676.1 1488453 D 315750 CDS YP_001486677.1 157692215 5620701 1488936..1489715 1 NC_009848.1 ABC transporter ATP-binding protein 1489715 ylmA 5620701 ylmA Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001486677.1 1488936 D 315750 CDS YP_001486678.1 157692216 5620702 1489795..1490031 1 NC_009848.1 hypothetical protein 1490031 ylmC 5620702 ylmC Bacillus pumilus SAFR-032 hypothetical protein YP_001486678.1 1489795 D 315750 CDS YP_001486679.1 157692217 5620703 1490268..1491107 1 NC_009848.1 hypothetical protein 1491107 ylmD 5620703 ylmD Bacillus pumilus SAFR-032 hypothetical protein YP_001486679.1 1490268 D 315750 CDS YP_001486680.1 157692218 5620704 1491114..1491803 1 NC_009848.1 possible Class III pyridoxal 5; hypothetical protein 1491803 ylmE 5620704 ylmE Bacillus pumilus SAFR-032 hypothetical protein YP_001486680.1 1491114 D 315750 CDS YP_001486681.1 157692219 5620705 1491805..1492263 1 NC_009848.1 hypothetical protein 1492263 ylmF 5620705 ylmF Bacillus pumilus SAFR-032 hypothetical protein YP_001486681.1 1491805 D 315750 CDS YP_001486682.1 157692220 5620706 1492270..1492551 1 NC_009848.1 hypothetical protein 1492551 ylmG 5620706 ylmG Bacillus pumilus SAFR-032 hypothetical protein YP_001486682.1 1492270 D 315750 CDS YP_001486683.1 157692221 5620707 1492605..1493381 1 NC_009848.1 possible RNA-binding protein; hypothetical protein 1493381 ylmH 5620707 ylmH Bacillus pumilus SAFR-032 hypothetical protein YP_001486683.1 1492605 D 315750 CDS YP_001486684.1 157692222 5620708 1493408..1493902 1 NC_009848.1 cell-division initiation protein 1493902 divIVA 5620708 divIVA Bacillus pumilus SAFR-032 cell-division initiation protein YP_001486684.1 1493408 D 315750 CDS YP_001486685.1 157692223 5620709 1494253..1497018 1 NC_009848.1 IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1497018 ileS 5620709 ileS Bacillus pumilus SAFR-032 isoleucyl-tRNA synthetase YP_001486685.1 1494253 D 315750 CDS YP_001486686.1 157692224 5620710 1497179..1497553 1 NC_009848.1 possible suppressor protein DnaK; hypothetical protein 1497553 ylyA 5620710 ylyA Bacillus pumilus SAFR-032 hypothetical protein YP_001486686.1 1497179 D 315750 CDS YP_001486687.1 157692225 5620711 1497648..1498115 1 NC_009848.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1498115 lspA 5620711 lspA Bacillus pumilus SAFR-032 lipoprotein signal peptidase YP_001486687.1 1497648 D 315750 CDS YP_001486688.1 157692226 5620712 1498112..1499026 1 NC_009848.1 23S RNA-specific pseudouridylate synthase RluA; pseudouridylate synthase 1499026 ylyB 5620712 ylyB Bacillus pumilus SAFR-032 pseudouridylate synthase YP_001486688.1 1498112 D 315750 CDS YP_001486689.1 157692227 5620713 1499198..1499740 1 NC_009848.1 regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 1499740 pyrR 5620713 pyrR Bacillus pumilus SAFR-032 bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase YP_001486689.1 1499198 D 315750 CDS YP_001486690.1 157692228 5620714 1499895..1501223 1 NC_009848.1 NCS2 family nucleobase:cation symporter-2 1501223 pyrP 5620714 pyrP Bacillus pumilus SAFR-032 NCS2 family nucleobase:cation symporter-2 YP_001486690.1 1499895 D 315750 CDS YP_001486691.1 157692229 5620715 1501353..1502276 1 NC_009848.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1502276 pyrB 5620715 pyrB Bacillus pumilus SAFR-032 aspartate carbamoyltransferase catalytic subunit YP_001486691.1 1501353 D 315750 CDS YP_001486692.1 157692230 5620716 1502260..1503546 1 NC_009848.1 dihydroorotase 1503546 pyrC 5620716 pyrC Bacillus pumilus SAFR-032 dihydroorotase YP_001486692.1 1502260 D 315750 CDS YP_001486693.1 157692231 5620717 1503543..1504637 1 NC_009848.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1504637 pyrAA 5620717 pyrAA Bacillus pumilus SAFR-032 carbamoyl phosphate synthase small subunit YP_001486693.1 1503543 D 315750 CDS YP_001486694.1 157692232 5620718 1504622..1507837 1 NC_009848.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1507837 carB 5620718 carB Bacillus pumilus SAFR-032 carbamoyl phosphate synthase large subunit YP_001486694.1 1504622 D 315750 CDS YP_001486695.1 157692233 5620719 1507834..1508610 1 NC_009848.1 responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+); dihydroorotate dehydrogenase electron transfer subunit 1508610 pyrK 5620719 pyrK Bacillus pumilus SAFR-032 dihydroorotate dehydrogenase electron transfer subunit YP_001486695.1 1507834 D 315750 CDS YP_001486696.1 157692234 5620720 1508604..1509536 1 NC_009848.1 catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 1509536 pyrD 5620720 pyrD Bacillus pumilus SAFR-032 dihydroorotate dehydrogenase 1B YP_001486696.1 1508604 D 315750 CDS YP_001486697.1 157692235 5620721 1509508..1510212 1 NC_009848.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1510212 pyrF 5620721 pyrF Bacillus pumilus SAFR-032 orotidine 5'-phosphate decarboxylase YP_001486697.1 1509508 D 315750 CDS YP_001486698.1 157692236 5620722 1510220..1510858 1 NC_009848.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1510858 pyrE 5620722 pyrE Bacillus pumilus SAFR-032 orotate phosphoribosyltransferase YP_001486698.1 1510220 D 315750 CDS YP_001486699.1 157692237 5620723 1511336..1512037 1 NC_009848.1 phosphoadenylyl-sulfate reductase (thioredoxin) 1512037 cysH 5620723 cysH Bacillus pumilus SAFR-032 phosphoadenylyl-sulfate reductase (thioredoxin) YP_001486699.1 1511336 D 315750 CDS YP_001486700.1 157692238 5620724 1512051..1513115 1 NC_009848.1 PiT family inorganic phosphate transporter 1513115 cysP 5620724 cysP Bacillus pumilus SAFR-032 PiT family inorganic phosphate transporter YP_001486700.1 1512051 D 315750 CDS YP_001486701.1 157692239 5620725 1513171..1514307 1 NC_009848.1 ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms; sulfate adenylyltransferase 1514307 sat 5620725 sat Bacillus pumilus SAFR-032 sulfate adenylyltransferase YP_001486701.1 1513171 D 315750 CDS YP_001486702.1 157692240 5620726 1514322..1514915 1 NC_009848.1 adenylylsulfate kinase 1514915 cysC 5620726 cysC Bacillus pumilus SAFR-032 adenylylsulfate kinase YP_001486702.1 1514322 D 315750 CDS YP_001486703.1 157692241 5620727 1514945..1515700 1 NC_009848.1 YlnD; uroporphyrin-III C-methyltransferase 1515700 cysG 5620727 cysG Bacillus pumilus SAFR-032 uroporphyrin-III C-methyltransferase YP_001486703.1 1514945 D 315750 CDS YP_001486704.1 157692242 5620728 1515776..1516561 1 NC_009848.1 YlnE; sirohydrochlorin cobaltochelatase 1516561 cbiX 5620728 cbiX Bacillus pumilus SAFR-032 sirohydrochlorin cobaltochelatase YP_001486704.1 1515776 D 315750 CDS YP_001486705.1 157692243 5620729 1516542..1517045 1 NC_009848.1 ylnF; precorrin-2 dehydrogenase 1517045 5620729 BPUM_1462 Bacillus pumilus SAFR-032 precorrin-2 dehydrogenase YP_001486705.1 1516542 D 315750 CDS YP_001486706.1 157692244 5620730 complement(1517076..1518785) 1 NC_009848.1 YloA; fibronectin binding protein A 1518785 5620730 BPUM_1463 Bacillus pumilus SAFR-032 fibronectin binding protein A YP_001486706.1 1517076 R 315750 CDS YP_001486707.1 157692245 5620731 1518950..1521625 1 NC_009848.1 P-ATPase superfamily P-type ATPase cation transporter 1521625 yloB 5620731 yloB Bacillus pumilus SAFR-032 P-ATPase superfamily P-type ATPase cation transporter YP_001486707.1 1518950 D 315750 CDS YP_001486708.1 157692246 5620732 1521709..1522584 1 NC_009848.1 hypothetical protein 1522584 yloC 5620732 yloC Bacillus pumilus SAFR-032 hypothetical protein YP_001486708.1 1521709 D 315750 CDS YP_001486709.1 157692247 5620733 1522661..1522930 1 NC_009848.1 YlzA; hypothetical protein 1522930 5620733 BPUM_1466 Bacillus pumilus SAFR-032 hypothetical protein YP_001486709.1 1522661 D 315750 CDS YP_001486710.1 157692248 5620734 1522940..1523554 1 NC_009848.1 Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1523554 gmk 5620734 gmk Bacillus pumilus SAFR-032 guanylate kinase YP_001486710.1 1522940 D 315750 CDS YP_001486711.1 157692249 5620735 1523558..1523761 1 NC_009848.1 Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 1523761 rpoZ 5620735 rpoZ Bacillus pumilus SAFR-032 DNA-directed RNA polymerase subunit omega YP_001486711.1 1523558 D 315750 CDS YP_001486712.1 157692250 5620736 1523879..1525096 1 NC_009848.1 YloI; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 1525096 coaBC 5620736 coaBC Bacillus pumilus SAFR-032 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase YP_001486712.1 1523879 D 315750 CDS YP_001486713.1 157692251 5620737 1525093..1527501 1 NC_009848.1 binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1527501 priA 5620737 priA Bacillus pumilus SAFR-032 primosome assembly protein PriA YP_001486713.1 1525093 D 315750 CDS YP_001486714.1 157692252 5620738 1527517..1527999 1 NC_009848.1 cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1527999 def 5620738 def Bacillus pumilus SAFR-032 peptide deformylase YP_001486714.1 1527517 D 315750 CDS YP_001486715.1 157692253 5620739 1528005..1528958 1 NC_009848.1 methionyl-tRNA formyltransferase 1528958 fmt 5620739 fmt Bacillus pumilus SAFR-032 methionyl-tRNA formyltransferase YP_001486715.1 1528005 D 315750 CDS YP_001486716.1 157692254 5620740 1528945..1530288 1 NC_009848.1 sun protein YloM; rRNA SAM-dependent methyltransferase RmsB 1530288 rsmB 5620740 rsmB Bacillus pumilus SAFR-032 rRNA SAM-dependent methyltransferase RmsB YP_001486716.1 1528945 D 315750 CDS YP_001486717.1 157692255 5620741 1530292..1531374 1 NC_009848.1 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1531374 5620741 BPUM_1474 Bacillus pumilus SAFR-032 ribosomal RNA large subunit methyltransferase N YP_001486717.1 1530292 D 315750 CDS YP_001486718.1 157692256 5620742 1531378..1532148 1 NC_009848.1 serine/threonine phosphatase 1532148 prpC 5620742 prpC Bacillus pumilus SAFR-032 serine/threonine phosphatase YP_001486718.1 1531378 D 315750 CDS YP_001486719.1 157692257 5620743 1532142..1534097 1 NC_009848.1 serine/threonine kinase 1534097 prkC 5620743 prkC Bacillus pumilus SAFR-032 serine/threonine kinase YP_001486719.1 1532142 D 315750 CDS YP_001486720.1 157692258 5620744 1534110..1535006 1 NC_009848.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 1535006 yloQ 5620744 yloQ Bacillus pumilus SAFR-032 ribosome-associated GTPase YP_001486720.1 1534110 D 315750 CDS YP_001486721.1 157692259 5620745 1535010..1535660 1 NC_009848.1 catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 1535660 rpe 5620745 rpe Bacillus pumilus SAFR-032 ribulose-phosphate 3-epimerase YP_001486721.1 1535010 D 315750 CDS YP_001486722.1 157692260 5620746 1535721..1536365 1 NC_009848.1 thiamin pyrophosphokinase 1536365 yloS 5620746 yloS Bacillus pumilus SAFR-032 thiamin pyrophosphokinase YP_001486722.1 1535721 D 315750 CDS YP_001486723.1 157692261 5620747 1536437..1536517 1 NC_009848.1 involved in the production of the spore cortex and coat; stage V sporulation protein M 1536517 spoVM 5620747 spoVM Bacillus pumilus SAFR-032 stage V sporulation protein M YP_001486723.1 1536437 D 315750 CDS YP_001486724.1 157692262 5620748 complement(1536587..1536775) 1 NC_009848.1 required for 70S ribosome assembly; 50S ribosomal protein L28 1536775 rpmB 5620748 rpmB Bacillus pumilus SAFR-032 50S ribosomal protein L28 YP_001486724.1 1536587 R 315750 CDS YP_001486725.1 157692263 5620749 1537047..1537409 1 NC_009848.1 hypothetical protein 1537409 5620749 BPUM_1482 Bacillus pumilus SAFR-032 hypothetical protein YP_001486725.1 1537047 D 315750 CDS YP_001486726.1 157692264 5620750 1537425..1539104 1 NC_009848.1 glycerone kinase 1539104 5620750 BPUM_1483 Bacillus pumilus SAFR-032 glycerone kinase YP_001486726.1 1537425 D 315750 CDS YP_001486727.1 157692265 5620751 1539254..1539916 1 NC_009848.1 L-serine ammonia-lyase beta chain 1539916 sdaAB 5620751 sdaAB Bacillus pumilus SAFR-032 L-serine ammonia-lyase beta chain YP_001486727.1 1539254 D 315750 CDS YP_001486728.1 157692266 5620752 1539937..1540839 1 NC_009848.1 L-serine ammonia-lyase alpha chain 1540839 sdaAA 5620752 sdaAA Bacillus pumilus SAFR-032 L-serine ammonia-lyase alpha chain YP_001486728.1 1539937 D 315750 CDS YP_001486729.1 157692267 5620753 1540817..1542865 1 NC_009848.1 catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1542865 recG 5620753 recG Bacillus pumilus SAFR-032 ATP-dependent DNA helicase RecG YP_001486729.1 1540817 D 315750 CDS YP_001486730.1 157692268 5620754 1542978..1543544 1 NC_009848.1 negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria; fatty acid biosynthesis transcriptional regulator 1543544 ylpC 5620754 ylpC Bacillus pumilus SAFR-032 fatty acid biosynthesis transcriptional regulator YP_001486730.1 1542978 D 315750 CDS YP_001486731.1 157692269 5620755 1543560..1544558 1 NC_009848.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1544558 plsX 5620755 plsX Bacillus pumilus SAFR-032 putative glycerol-3-phosphate acyltransferase PlsX YP_001486731.1 1543560 D 315750 CDS YP_001486732.1 157692270 5620756 1544574..1545518 1 NC_009848.1 ACP S-malonyltransferase 1545518 fabD 5620756 fabD Bacillus pumilus SAFR-032 ACP S-malonyltransferase YP_001486732.1 1544574 D 315750 CDS YP_001486733.1 157692271 5620757 1545518..1546261 1 NC_009848.1 3-oxoacyl-ACP reductase 1546261 fabG1 5620757 fabG1 Bacillus pumilus SAFR-032 3-oxoacyl-ACP reductase YP_001486733.1 1545518 D 315750 CDS YP_001486734.1 157692272 5620758 1546343..1546576 1 NC_009848.1 carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1546576 acpP 5620758 acpP Bacillus pumilus SAFR-032 acyl carrier protein YP_001486734.1 1546343 D 315750 CDS YP_001486735.1 157692273 5620759 1546761..1547504 1 NC_009848.1 cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1547504 rnc 5620759 rnc Bacillus pumilus SAFR-032 ribonuclease III YP_001486735.1 1546761 D 315750 CDS YP_001486736.1 157692274 5620760 1547610..1551170 1 NC_009848.1 chromosome segregation protein Smc 1551170 smc 5620760 smc Bacillus pumilus SAFR-032 chromosome segregation protein Smc YP_001486736.1 1547610 D 315750 CDS YP_001486737.1 157692275 5620761 1551193..1552179 1 NC_009848.1 signal recognition particle-docking protein 1552179 ftsY 5620761 ftsY Bacillus pumilus SAFR-032 signal recognition particle-docking protein YP_001486737.1 1551193 D 315750 CDS YP_001486738.1 157692276 5620762 1552322..1552654 1 NC_009848.1 putative DNA-binding protein 1552654 ylxM 5620762 ylxM Bacillus pumilus SAFR-032 putative DNA-binding protein YP_001486738.1 1552322 D 315750 CDS YP_001486739.1 157692277 5620763 1552668..1554008 1 NC_009848.1 Sec family Type II general secretory pathway protein SRP54; signal recognition particle protein Ffh 1554008 ffh 5620763 ffh Bacillus pumilus SAFR-032 signal recognition particle protein Ffh YP_001486739.1 1552668 D 315750 CDS YP_001486740.1 157692278 5620764 1554114..1554386 1 NC_009848.1 binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1554386 rpsP 5620764 rpsP Bacillus pumilus SAFR-032 30S ribosomal protein S16 YP_001486740.1 1554114 D 315750 CDS YP_001486741.1 157692279 5620765 1554386..1554631 1 NC_009848.1 RNA binding protein 1554631 5620765 BPUM_1498 Bacillus pumilus SAFR-032 RNA binding protein YP_001486741.1 1554386 D 315750 CDS YP_001486742.1 157692280 5620766 1554735..1555121 1 NC_009848.1 hypothetical protein 1555121 5620766 BPUM_1499 Bacillus pumilus SAFR-032 hypothetical protein YP_001486742.1 1554735 D 315750 CDS YP_001486743.1 157692281 5620767 1555130..1555654 1 NC_009848.1 Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1555654 rimM 5620767 rimM Bacillus pumilus SAFR-032 16S rRNA-processing protein RimM YP_001486743.1 1555130 D 315750 CDS YP_001486744.1 157692282 5620768 1555651..1556385 1 NC_009848.1 methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1556385 trmD 5620768 trmD Bacillus pumilus SAFR-032 tRNA (guanine-N(1)-)-methyltransferase YP_001486744.1 1555651 D 315750 CDS YP_001486745.1 157692283 5620769 1556523..1556870 1 NC_009848.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1556870 rplS 5620769 rplS Bacillus pumilus SAFR-032 50S ribosomal protein L19 YP_001486745.1 1556523 D 315750 CDS YP_001486746.1 157692284 5620770 1556959..1557807 1 NC_009848.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 1557807 rbgA 5620770 rbgA Bacillus pumilus SAFR-032 ribosomal biogenesis GTPase YP_001486746.1 1556959 D 315750 CDS YP_001486747.1 157692285 5620771 1557883..1558647 1 NC_009848.1 RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1558647 rnhB 5620771 rnhB Bacillus pumilus SAFR-032 ribonuclease HII YP_001486747.1 1557883 D 315750 CDS YP_001486748.1 157692286 5620772 1558675..1560411 1 NC_009848.1 hypothetical protein 1560411 5620772 BPUM_1505 Bacillus pumilus SAFR-032 hypothetical protein YP_001486748.1 1558675 D 315750 CDS YP_001486749.1 157692287 5620773 1560408..1560683 1 NC_009848.1 flagellar biosynthesis protein FlhB 1560683 ylqH 5620773 ylqH Bacillus pumilus SAFR-032 flagellar biosynthesis protein FlhB YP_001486749.1 1560408 D 315750 CDS YP_001486750.1 157692288 5620774 1560860..1562020 1 NC_009848.1 catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1562020 sucC 5620774 sucC Bacillus pumilus SAFR-032 succinyl-CoA synthetase subunit beta YP_001486750.1 1560860 D 315750 CDS YP_001486751.1 157692289 5620775 1562043..1562945 1 NC_009848.1 Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 1562945 sucD 5620775 sucD Bacillus pumilus SAFR-032 succinyl-CoA synthetase subunit alpha YP_001486751.1 1562043 D 315750 CDS YP_001486752.1 157692290 5620776 1563009..1563911 1 NC_009848.1 Smf family DNA processing protein 1563911 smf 5620776 smf Bacillus pumilus SAFR-032 Smf family DNA processing protein YP_001486752.1 1563009 D 315750 CDS YP_001486753.1 157692291 5620777 1564105..1566180 1 NC_009848.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1566180 topA 5620777 topA Bacillus pumilus SAFR-032 DNA topoisomerase I YP_001486753.1 1564105 D 315750 CDS YP_001486754.1 157692292 5620778 1566251..1567555 1 NC_009848.1 TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 1567555 gidA1 5620778 gidA1 Bacillus pumilus SAFR-032 tRNA (uracil-5-)-methyltransferase Gid YP_001486754.1 1566251 D 315750 CDS YP_001486755.1 157692293 5620779 1567618..1568535 1 NC_009848.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 1568535 xerC 5620779 xerC Bacillus pumilus SAFR-032 site-specific tyrosine recombinase XerC YP_001486755.1 1567618 D 315750 CDS YP_001486756.1 157692294 5620780 1568550..1569095 1 NC_009848.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1569095 clpQ 5620780 clpQ Bacillus pumilus SAFR-032 ATP-dependent protease peptidase subunit YP_001486756.1 1568550 D 315750 CDS YP_001486757.1 157692295 5620781 1569112..1570512 1 NC_009848.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1570512 hslU 5620781 hslU Bacillus pumilus SAFR-032 ATP-dependent protease ATP-binding subunit HslU YP_001486757.1 1569112 D 315750 CDS YP_001486758.1 157692296 5620782 1570547..1571326 1 NC_009848.1 CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 1571326 codY 5620782 codY Bacillus pumilus SAFR-032 transcriptional repressor CodY YP_001486758.1 1570547 D 315750 CDS YP_001486759.1 157692297 5620783 1571613..1572002 1 NC_009848.1 with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1572002 flgB 5620783 flgB Bacillus pumilus SAFR-032 flagellar basal body rod protein FlgB YP_001486759.1 1571613 D 315750 CDS YP_001486760.1 157692298 5620784 1572002..1572454 1 NC_009848.1 with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1572454 flgC 5620784 flgC Bacillus pumilus SAFR-032 flagellar basal body rod protein FlgC YP_001486760.1 1572002 D 315750 CDS YP_001486761.1 157692299 5620785 1572466..1572783 1 NC_009848.1 forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 1572783 fliE 5620785 fliE Bacillus pumilus SAFR-032 flagellar hook-basal body protein FliE YP_001486761.1 1572466 D 315750 CDS YP_001486762.1 157692300 5620786 1572833..1574425 1 NC_009848.1 the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1574425 fliF 5620786 fliF Bacillus pumilus SAFR-032 flagellar MS-ring protein YP_001486762.1 1572833 D 315750 CDS YP_001486763.1 157692301 5620787 1574437..1575453 1 NC_009848.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1575453 fliG 5620787 fliG Bacillus pumilus SAFR-032 flagellar motor switch protein G YP_001486763.1 1574437 D 315750 CDS YP_001486764.1 157692302 5620788 1575446..1576210 1 NC_009848.1 binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1576210 fliH 5620788 fliH Bacillus pumilus SAFR-032 flagellar assembly protein H YP_001486764.1 1575446 D 315750 CDS YP_001486765.1 157692303 5620789 1576207..1577523 1 NC_009848.1 involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1577523 fliI 5620789 fliI Bacillus pumilus SAFR-032 flagellum-specific ATP synthase YP_001486765.1 1576207 D 315750 CDS YP_001486766.1 157692304 5620790 1577520..1577975 1 NC_009848.1 rod/hook and filament chaperone; flagellar biosynthesis chaperone 1577975 fliJ 5620790 fliJ Bacillus pumilus SAFR-032 flagellar biosynthesis chaperone YP_001486766.1 1577520 D 315750 CDS YP_001486767.1 157692305 5620791 1577988..1578686 1 NC_009848.1 possible flagellar motor switch protein FliG; hypothetical protein 1578686 ylxF 5620791 ylxF Bacillus pumilus SAFR-032 hypothetical protein YP_001486767.1 1577988 D 315750 CDS YP_001486768.1 157692306 5620792 1578687..1580018 1 NC_009848.1 flagellar hook-length control protein 1580018 fliK 5620792 fliK Bacillus pumilus SAFR-032 flagellar hook-length control protein YP_001486768.1 1578687 D 315750 CDS YP_001486769.1 157692307 5620793 1580018..1580464 1 NC_009848.1 acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein 1580464 flgD 5620793 flgD Bacillus pumilus SAFR-032 flagellar basal body rod modification protein YP_001486769.1 1580018 D 315750 CDS YP_001486770.1 157692308 5620794 1580482..1581273 1 NC_009848.1 makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1581273 flgG 5620794 flgG Bacillus pumilus SAFR-032 flagellar basal body rod protein FlgG YP_001486770.1 1580482 D 315750 CDS YP_001486771.1 157692309 5620795 1581311..1581526 1 NC_009848.1 hypothetical protein 1581526 5620795 BPUM_1528 Bacillus pumilus SAFR-032 hypothetical protein YP_001486771.1 1581311 D 315750 CDS YP_001486772.1 157692310 5620796 1581523..1581951 1 NC_009848.1 interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1581951 fliL 5620796 fliL Bacillus pumilus SAFR-032 flagellar basal body-associated protein FliL YP_001486772.1 1581523 D 315750 CDS YP_001486773.1 157692311 5620797 1581984..1582982 1 NC_009848.1 with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1582982 fliM 5620797 fliM Bacillus pumilus SAFR-032 flagellar motor switch protein FliM YP_001486773.1 1581984 D 315750 CDS YP_001486774.1 157692312 5620798 1582972..1584096 1 NC_009848.1 One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1584096 fliY 5620798 fliY Bacillus pumilus SAFR-032 flagellar motor switch protein YP_001486774.1 1582972 D 315750 CDS YP_001486775.1 157692313 5620799 1584124..1584486 1 NC_009848.1 chemotaxis protein CheB; response regulator CheY 1584486 cheY 5620799 cheY Bacillus pumilus SAFR-032 response regulator CheY YP_001486775.1 1584124 D 315750 CDS YP_001486776.1 157692314 5620800 1584505..1585164 1 NC_009848.1 possible structural component of the flagellum that anchors the rod to the membrane; flagella biosynthesis protein FliZ 1585164 fliZ 5620800 fliZ Bacillus pumilus SAFR-032 flagella biosynthesis protein FliZ YP_001486776.1 1584505 D 315750 CDS YP_001486777.1 157692315 5620801 1585157..1585822 1 NC_009848.1 FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1585822 fliP 5620801 fliP Bacillus pumilus SAFR-032 flagellar biosynthesis protein FliP YP_001486777.1 1585157 D 315750 CDS YP_001486778.1 157692316 5620802 1585839..1586108 1 NC_009848.1 with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 1586108 fliQ 5620802 fliQ Bacillus pumilus SAFR-032 flagellar biosynthesis protein FliQ YP_001486778.1 1585839 D 315750 CDS YP_001486779.1 157692317 5620803 1586115..1586894 1 NC_009848.1 FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1586894 fliR 5620803 fliR Bacillus pumilus SAFR-032 flagellar biosynthesis protein FliR YP_001486779.1 1586115 D 315750 CDS YP_001486780.1 157692318 5620804 1586891..1587979 1 NC_009848.1 membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1587979 flhB 5620804 flhB Bacillus pumilus SAFR-032 flagellar biosynthesis protein FlhB YP_001486780.1 1586891 D 315750 CDS YP_001486781.1 157692319 5620805 1588009..1590042 1 NC_009848.1 membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1590042 flhA 5620805 flhA Bacillus pumilus SAFR-032 flagellar biosynthesis protein FlhA YP_001486781.1 1588009 D 315750 CDS YP_001486782.1 157692320 5620806 1590042..1591157 1 NC_009848.1 positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1591157 flhF 5620806 flhF Bacillus pumilus SAFR-032 flagellar biosynthesis regulator FlhF YP_001486782.1 1590042 D 315750 CDS YP_001486783.1 157692321 5620807 1591154..1592059 1 NC_009848.1 possible ParA ATPase; ATPase 1592059 ylxH 5620807 ylxH Bacillus pumilus SAFR-032 ATPase YP_001486783.1 1591154 D 315750 CDS YP_001486784.1 157692322 5620808 1592056..1593129 1 NC_009848.1 regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1593129 cheB 5620808 cheB Bacillus pumilus SAFR-032 chemotaxis-specific methylesterase YP_001486784.1 1592056 D 315750 CDS YP_001486785.1 157692323 5620809 1593135..1595165 1 NC_009848.1 sensor histidine kinase CheA 1595165 cheA 5620809 cheA Bacillus pumilus SAFR-032 sensor histidine kinase CheA YP_001486785.1 1593135 D 315750 CDS YP_001486786.1 157692324 5620810 1595190..1595651 1 NC_009848.1 chemotaxis protein CheW 1595651 cheW 5620810 cheW Bacillus pumilus SAFR-032 chemotaxis protein CheW YP_001486786.1 1595190 D 315750 CDS YP_001486787.1 157692325 5620811 1595664..1596290 1 NC_009848.1 chemotaxis protein CheC 1596290 cheC 5620811 cheC Bacillus pumilus SAFR-032 chemotaxis protein CheC YP_001486787.1 1595664 D 315750 CDS YP_001486788.1 157692326 5620812 1596290..1596790 1 NC_009848.1 catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 1596790 cheD 5620812 cheD Bacillus pumilus SAFR-032 chemoreceptor glutamine deamidase CheD YP_001486788.1 1596290 D 315750 CDS YP_001486789.1 157692327 5620813 1596815..1597582 1 NC_009848.1 expressed in late exponential phase; controls the expression of genes coding cell surface proteins involved in chemotaxis, flagellar assembly, and autolysis; RNA polymerase sigma factor SigD 1597582 sigD 5620813 sigD Bacillus pumilus SAFR-032 RNA polymerase sigma factor SigD YP_001486789.1 1596815 D 315750 CDS YP_001486790.1 157692328 5620814 1597604..1598143 1 NC_009848.1 hypothetical protein 1598143 ylxL 5620814 ylxL Bacillus pumilus SAFR-032 hypothetical protein YP_001486790.1 1597604 D 315750 CDS YP_001486791.1 157692329 5620816 1599124..1600005 1 NC_009848.1 EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1600005 tsf 5620816 tsf Bacillus pumilus SAFR-032 elongation factor Ts YP_001486791.1 1599124 D 315750 CDS YP_001486792.1 157692330 5620817 1600210..1600863 1 NC_009848.1 UMP kinase 1600863 pyrH 5620817 pyrH Bacillus pumilus SAFR-032 UMP kinase YP_001486792.1 1600210 D 315750 CDS YP_001486793.1 157692331 5620818 1600865..1601422 1 NC_009848.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1601422 frr 5620818 frr Bacillus pumilus SAFR-032 ribosome recycling factor YP_001486793.1 1600865 D 315750 CDS YP_001486794.1 157692332 5620819 1601552..1602334 1 NC_009848.1 catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 1602334 uppS 5620819 uppS Bacillus pumilus SAFR-032 undecaprenyl pyrophosphate synthase YP_001486794.1 1601552 D 315750 CDS YP_001486795.1 157692333 5620820 1602443..1603141 1 NC_009848.1 phosphatidate cytidylyltransferase 1603141 cdsA 5620820 cdsA Bacillus pumilus SAFR-032 phosphatidate cytidylyltransferase YP_001486795.1 1602443 D 315750 CDS YP_001486796.1 157692334 5620821 1603180..1604331 1 NC_009848.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1604331 dxr 5620821 dxr Bacillus pumilus SAFR-032 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_001486796.1 1603180 D 315750 CDS YP_001486797.1 157692335 5620822 1604338..1605603 1 NC_009848.1 RseP; M50 family peptidase 1605603 yluC 5620822 yluC Bacillus pumilus SAFR-032 M50 family peptidase YP_001486797.1 1604338 D 315750 CDS YP_001486798.1 157692336 5620823 1605683..1607380 1 NC_009848.1 catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1607380 proS1 5620823 proS1 Bacillus pumilus SAFR-032 prolyl-tRNA synthetase YP_001486798.1 1605683 D 315750 CDS YP_001486799.1 157692337 5620824 1607456..1611769 1 NC_009848.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 1611769 polC 5620824 polC Bacillus pumilus SAFR-032 DNA polymerase III PolC YP_001486799.1 1607456 D 315750 CDS YP_001486800.1 157692338 5620825 1612188..1614038 1 NC_009848.1 Family 9 glycoside hydrolase CelA; cellulase 1614038 bglC 5620825 bglC Bacillus pumilus SAFR-032 cellulase YP_001486800.1 1612188 D 315750 CDS YP_001486801.1 157692339 5620826 1614069..1616174 1 NC_009848.1 Family 48 glycoside hydrolase; cellulose 1,4-beta-cellobiosidase 1616174 celB 5620826 celB Bacillus pumilus SAFR-032 cellulose 1,4-beta-cellobiosidase YP_001486801.1 1614069 D 315750 CDS YP_001486802.1 157692340 5620827 1616259..1617488 1 NC_009848.1 glycoside hydrolase 1617488 5620827 BPUM_1560 Bacillus pumilus SAFR-032 glycoside hydrolase YP_001486802.1 1616259 D 315750 CDS YP_001486803.1 157692341 5620828 1617507..1618640 1 NC_009848.1 Family 5 glycoside hydrolase YdhT; mannan endo-1,4-beta-mannosidase 1618640 5620828 BPUM_1561 Bacillus pumilus SAFR-032 mannan endo-1,4-beta-mannosidase YP_001486803.1 1617507 D 315750 CDS YP_001486804.1 157692342 5620829 1618879..1619352 1 NC_009848.1 in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1619352 ylxS 5620829 ylxS Bacillus pumilus SAFR-032 hypothetical protein YP_001486804.1 1618879 D 315750 CDS YP_001486805.1 157692343 5620830 1619385..1620500 1 NC_009848.1 modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1620500 nusA 5620830 nusA Bacillus pumilus SAFR-032 transcription elongation factor NusA YP_001486805.1 1619385 D 315750 CDS YP_001486806.1 157692344 5620831 1620507..1620806 1 NC_009848.1 hypothetical protein 1620806 ylxR 5620831 ylxR Bacillus pumilus SAFR-032 hypothetical protein YP_001486806.1 1620507 D 315750 CDS YP_001486807.1 157692345 5620832 1620793..1621095 1 NC_009848.1 hypothetical protein 1621095 ylxQ 5620832 ylxQ Bacillus pumilus SAFR-032 hypothetical protein YP_001486807.1 1620793 D 315750 CDS YP_001486808.1 157692346 5620833 1621115..1623235 1 NC_009848.1 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1623235 infB 5620833 infB Bacillus pumilus SAFR-032 translation initiation factor IF-2 YP_001486808.1 1621115 D 315750 CDS YP_001486809.1 157692347 5620834 1623232..1623510 1 NC_009848.1 hypothetical protein 1623510 5620834 BPUM_1567 Bacillus pumilus SAFR-032 hypothetical protein YP_001486809.1 1623232 D 315750 CDS YP_001486810.1 157692348 5620835 1623528..1623878 1 NC_009848.1 associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1623878 rbfA 5620835 rbfA Bacillus pumilus SAFR-032 ribosome-binding factor A YP_001486810.1 1623528 D 315750 CDS YP_001486811.1 157692349 5620836 1623947..1624876 1 NC_009848.1 catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1624876 truB 5620836 truB Bacillus pumilus SAFR-032 tRNA pseudouridine synthase B YP_001486811.1 1623947 D 315750 CDS YP_001486812.1 157692350 5620837 1624895..1625860 1 NC_009848.1 catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 1625860 ribC 5620837 ribC Bacillus pumilus SAFR-032 bifunctional riboflavin kinase/FMN adenylyltransferase YP_001486812.1 1624895 D 315750 CDS YP_001486813.1 157692351 5620838 1626001..1626270 1 NC_009848.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1626270 rpsO 5620838 rpsO Bacillus pumilus SAFR-032 30S ribosomal protein S15 YP_001486813.1 1626001 D 315750 CDS YP_001486814.1 157692352 5620839 1626451..1628568 1 NC_009848.1 polynucleotide phosphorylase/polyadenylase 1628568 pnpA 5620839 pnpA Bacillus pumilus SAFR-032 polynucleotide phosphorylase/polyadenylase YP_001486814.1 1626451 D 315750 CDS YP_001486815.1 157692353 5620840 1628683..1629636 1 NC_009848.1 polysaccharide deacetylase 1629636 ylxY 5620840 ylxY Bacillus pumilus SAFR-032 polysaccharide deacetylase YP_001486815.1 1628683 D 315750 CDS YP_001486816.1 157692354 5620841 1629670..1630899 1 NC_009848.1 M16B subfamily peptidase 1630899 mlpA 5620841 mlpA Bacillus pumilus SAFR-032 M16B subfamily peptidase YP_001486816.1 1629670 D 315750 CDS YP_001486817.1 157692355 5620842 1630973..1631896 1 NC_009848.1 aminoglycoside phosphotransferase; kanamycin kinase 1631896 aph 5620842 aph Bacillus pumilus SAFR-032 kanamycin kinase YP_001486817.1 1630973 D 315750 CDS YP_001486818.1 157692356 5620843 1631967..1632239 1 NC_009848.1 possible PRC-barrel domain protein; hypothetical protein 1632239 ymxH 5620843 ymxH Bacillus pumilus SAFR-032 hypothetical protein YP_001486818.1 1631967 D 315750 CDS YP_001486819.1 157692357 5620844 1632363..1633265 1 NC_009848.1 catalyzes the synthesis of dipicolinic acid from dihydroxydipicolinic acid; plays a role in spore heat resistance; dipicolinate synthase subunit A 1633265 spoVFA 5620844 spoVFA Bacillus pumilus SAFR-032 dipicolinate synthase subunit A YP_001486819.1 1632363 D 315750 CDS YP_001486820.1 157692358 5620845 1633262..1633855 1 NC_009848.1 involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme; dipicolinate synthase subunit B 1633855 spoVFB 5620845 spoVFB Bacillus pumilus SAFR-032 dipicolinate synthase subunit B YP_001486820.1 1633262 D 315750 CDS YP_001486821.1 157692359 5620846 1633995..1635014 1 NC_009848.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1635014 asd 5620846 asd Bacillus pumilus SAFR-032 aspartate-semialdehyde dehydrogenase YP_001486821.1 1633995 D 315750 CDS YP_001486822.1 157692360 5620847 1635107..1636321 1 NC_009848.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase I 1636321 dapG 5620847 dapG Bacillus pumilus SAFR-032 aspartate kinase I YP_001486822.1 1635107 D 315750 CDS YP_001486823.1 157692361 5620848 1636352..1637218 1 NC_009848.1 catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1637218 dapA2 5620848 dapA2 Bacillus pumilus SAFR-032 dihydrodipicolinate synthase YP_001486823.1 1636352 D 315750 CDS YP_001486824.1 157692362 5620849 1637390..1639057 1 NC_009848.1 metallo beta lactamase 1639057 5620849 BPUM_1582 Bacillus pumilus SAFR-032 metallo beta lactamase YP_001486824.1 1637390 D 315750 CDS YP_001486825.1 157692363 5620850 1639161..1639910 1 NC_009848.1 TepA; endopeptidase ClpP 1639910 clpP1 5620850 clpP1 Bacillus pumilus SAFR-032 endopeptidase ClpP YP_001486825.1 1639161 D 315750 CDS YP_001486826.1 157692364 5620851 1639907..1640143 1 NC_009848.1 hypothetical protein 1640143 5620851 BPUM_1584 Bacillus pumilus SAFR-032 hypothetical protein YP_001486826.1 1639907 D 315750 CDS YP_001486827.1 157692365 5620852 1640254..1642626 1 NC_009848.1 stage III sporulation DNA translocase E 1642626 spoIIIE 5620852 spoIIIE Bacillus pumilus SAFR-032 stage III sporulation DNA translocase E YP_001486827.1 1640254 D 315750 CDS YP_001486828.1 157692366 5620853 1642792..1643517 1 NC_009848.1 GntR family transcriptional regulator 1643517 ymfC 5620853 ymfC Bacillus pumilus SAFR-032 GntR family transcriptional regulator YP_001486828.1 1642792 D 315750 CDS YP_001486829.1 157692367 5620854 1645167..1648283 1 NC_009848.1 YdgH; resistance-nodulation-cell division acriflavin:proton (H+) antiporter 1648283 5620854 BPUM_1587 Bacillus pumilus SAFR-032 resistance-nodulation-cell division acriflavin:proton (H+) antiporter YP_001486829.1 1645167 D 315750 CDS YP_001486830.1 157692368 5620855 1648429..1649709 1 NC_009848.1 YmfG; M16 family metallopeptidase 1649709 5620855 BPUM_1588 Bacillus pumilus SAFR-032 M16 family metallopeptidase YP_001486830.1 1648429 D 315750 CDS YP_001486831.1 157692369 5620856 1649706..1650998 1 NC_009848.1 YmfH; M16C subfamily metallopeptidase 1650998 5620856 BPUM_1589 Bacillus pumilus SAFR-032 M16C subfamily metallopeptidase YP_001486831.1 1649706 D 315750 CDS YP_001486832.1 157692370 5620857 1651149..1651625 1 NC_009848.1 MarR family transcriptional regulator 1651625 5620857 BPUM_1590 Bacillus pumilus SAFR-032 MarR family transcriptional regulator YP_001486832.1 1651149 D 315750 CDS YP_001486833.1 157692371 5620858 1651603..1654722 1 NC_009848.1 resistance-nodulation-cell division acriflavin:proton (H+) antiporter 1654722 ydgH 5620858 ydgH Bacillus pumilus SAFR-032 resistance-nodulation-cell division acriflavin:proton (H+) antiporter YP_001486833.1 1651603 D 315750 CDS YP_001486834.1 157692372 5620859 1654754..1655482 1 NC_009848.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1655482 fabG 5620859 fabG Bacillus pumilus SAFR-032 3-ketoacyl-ACP reductase YP_001486834.1 1654754 D 315750 CDS YP_001486835.1 157692373 5620860 1655556..1655813 1 NC_009848.1 hypothetical protein 1655813 ymfJ 5620860 ymfJ Bacillus pumilus SAFR-032 hypothetical protein YP_001486835.1 1655556 D 315750 CDS YP_001486836.1 157692374 5620861 1655945..1656736 1 NC_009848.1 YmfK; hypothetical protein 1656736 5620861 BPUM_1594 Bacillus pumilus SAFR-032 hypothetical protein YP_001486836.1 1655945 D 315750 CDS YP_001486837.1 157692375 5620862 1656751..1657671 1 NC_009848.1 transcriptional regulation protein 1657671 ymfM 5620862 ymfM Bacillus pumilus SAFR-032 transcriptional regulation protein YP_001486837.1 1656751 D 315750 CDS YP_001486838.1 157692376 5620863 1657747..1658328 1 NC_009848.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1658328 pgsA 5620863 pgsA Bacillus pumilus SAFR-032 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_001486838.1 1657747 D 315750 CDS YP_001486839.1 157692377 5620864 1658345..1659595 1 NC_009848.1 competence damage-inducible protein A 1659595 cinA 5620864 cinA Bacillus pumilus SAFR-032 competence damage-inducible protein A YP_001486839.1 1658345 D 315750 CDS YP_001486840.1 157692378 5620865 1659772..1660812 1 NC_009848.1 catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1660812 recA 5620865 recA Bacillus pumilus SAFR-032 recombinase A YP_001486840.1 1659772 D 315750 CDS YP_001486841.1 157692379 5620866 1661118..1662680 1 NC_009848.1 protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1662680 ymdA 5620866 ymdA Bacillus pumilus SAFR-032 phosphodiesterase YP_001486841.1 1661118 D 315750 CDS YP_001486842.1 157692380 5620867 1662768..1663562 1 NC_009848.1 hypothetical protein 1663562 ymdB 5620867 ymdB Bacillus pumilus SAFR-032 hypothetical protein YP_001486842.1 1662768 D 315750 CDS YP_001486843.1 157692381 5620868 1663764..1664024 1 NC_009848.1 stage V sporulation protein S 1664024 spoVS 5620868 spoVS Bacillus pumilus SAFR-032 stage V sporulation protein S YP_001486843.1 1663764 D 315750 CDS YP_001486844.1 157692382 5620869 1664227..1667271 1 NC_009848.1 resistance-nodulation-cell division acriflavin:proton (H+) antiporter 1667271 yerP 5620869 yerP Bacillus pumilus SAFR-032 resistance-nodulation-cell division acriflavin:proton (H+) antiporter YP_001486844.1 1664227 D 315750 CDS YP_001486845.1 157692383 5620870 1667446..1668510 1 NC_009848.1 converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 1668510 tdh 5620870 tdh Bacillus pumilus SAFR-032 L-threonine 3-dehydrogenase YP_001486845.1 1667446 D 315750 CDS YP_001486846.1 157692384 5620871 1668507..1669688 1 NC_009848.1 catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 1669688 kbl 5620871 kbl Bacillus pumilus SAFR-032 2-amino-3-ketobutyrate coenzyme A ligase YP_001486846.1 1668507 D 315750 CDS YP_001486847.1 157692385 5620872 1669847..1671373 1 NC_009848.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1671373 ymcB 5620872 ymcB Bacillus pumilus SAFR-032 (dimethylallyl)adenosine tRNA methylthiotransferase YP_001486847.1 1669847 D 315750 CDS YP_001486848.1 157692386 5620873 1671375..1671809 1 NC_009848.1 hypothetical protein 1671809 ymcA 5620873 ymcA Bacillus pumilus SAFR-032 hypothetical protein YP_001486848.1 1671375 D 315750 CDS YP_001486849.1 157692387 5620874 1672261..1672806 1 NC_009848.1 outer spore coat protein E 1672806 cotE 5620874 cotE Bacillus pumilus SAFR-032 outer spore coat protein E YP_001486849.1 1672261 D 315750 CDS YP_001486850.1 157692388 5620875 1672931..1675507 1 NC_009848.1 This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1675507 mutS1 5620875 mutS1 Bacillus pumilus SAFR-032 DNA mismatch repair protein MutS YP_001486850.1 1672931 D 315750 CDS YP_001486851.1 157692389 5620876 1675528..1677429 1 NC_009848.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1677429 mutL 5620876 mutL Bacillus pumilus SAFR-032 DNA mismatch repair protein YP_001486851.1 1675528 D 315750 CDS YP_001486852.1 157692390 5620877 complement(1677505..1678038) 1 NC_009848.1 hypothetical protein 1678038 yuaB 5620877 yuaB Bacillus pumilus SAFR-032 hypothetical protein YP_001486852.1 1677505 R 315750 CDS YP_001486853.1 157692391 5620878 complement(1678164..1678574) 1 NC_009848.1 hypothetical protein 1678574 5620878 BPUM_1611 Bacillus pumilus SAFR-032 hypothetical protein YP_001486853.1 1678164 R 315750 CDS YP_001486854.1 157692392 5620879 complement(1678682..1678867) 1 NC_009848.1 hypothetical protein 1678867 5620879 BPUM_1612 Bacillus pumilus SAFR-032 hypothetical protein YP_001486854.1 1678682 R 315750 CDS YP_001486855.1 157692393 5620880 1679131..1679607 1 NC_009848.1 transcription factor CarD 1679607 carD 5620880 carD Bacillus pumilus SAFR-032 transcription factor CarD YP_001486855.1 1679131 D 315750 CDS YP_001486856.1 157692394 5620881 1679919..1680668 1 NC_009848.1 phage-related protein YmaC 1680668 ymaC 5620881 ymaC Bacillus pumilus SAFR-032 phage-related protein YmaC YP_001486856.1 1679919 D 315750 CDS YP_001486857.1 157692395 5620882 1680834..1681982 1 NC_009848.1 aspartate phosphatase response regulator; response regulator 1681982 5620882 BPUM_1615 Bacillus pumilus SAFR-032 response regulator YP_001486857.1 1680834 D 315750 CDS YP_001486858.1 157692396 5620883 complement(1682075..1683400) 1 NC_009848.1 protease 1683400 aprX 5620883 aprX Bacillus pumilus SAFR-032 protease YP_001486858.1 1682075 R 315750 CDS YP_001486859.1 157692397 5620884 1683986..1684720 1 NC_009848.1 hypothetical protein 1684720 5620884 BPUM_1617 Bacillus pumilus SAFR-032 hypothetical protein YP_001486859.1 1683986 D 315750 CDS YP_001486860.1 157692398 5620885 1684798..1685247 1 NC_009848.1 osmotic stress regulator 1685247 ymaD 5620885 ymaD Bacillus pumilus SAFR-032 osmotic stress regulator YP_001486860.1 1684798 D 315750 CDS YP_001486861.1 157692399 5620886 complement(1685294..1685662) 1 NC_009848.1 DMT superfamily drug/metabolite transporter 1685662 ebrB 5620886 ebrB Bacillus pumilus SAFR-032 DMT superfamily drug/metabolite transporter YP_001486861.1 1685294 R 315750 CDS YP_001486862.1 157692400 5620887 complement(1685676..1685993) 1 NC_009848.1 DMT superfamily drug/metabolite transporter 1685993 ebrA 5620887 ebrA Bacillus pumilus SAFR-032 DMT superfamily drug/metabolite transporter YP_001486862.1 1685676 R 315750 CDS YP_001486863.1 157692401 5620888 complement(1685993..1686538) 1 NC_009848.1 TetR family transcriptional regulator 1686538 5620888 BPUM_1621 Bacillus pumilus SAFR-032 TetR family transcriptional regulator YP_001486863.1 1685993 R 315750 CDS YP_001486864.1 157692402 5620889 complement(1686651..1686902) 1 NC_009848.1 spore protein YmaG 1686902 ymaG 5620889 ymaG Bacillus pumilus SAFR-032 spore protein YmaG YP_001486864.1 1686651 R 315750 CDS YP_001486865.1 157692403 5620890 1687007..1687408 1 NC_009848.1 hypothetical protein 1687408 ymaF 5620890 ymaF Bacillus pumilus SAFR-032 hypothetical protein YP_001486865.1 1687007 D 315750 CDS YP_001486866.1 157692404 5620891 1687439..1688434 1 NC_009848.1 IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1688434 miaA 5620891 miaA Bacillus pumilus SAFR-032 tRNA delta(2)-isopentenylpyrophosphate transferase YP_001486866.1 1687439 D 315750 CDS YP_001486867.1 157692405 5620892 1688460..1688681 1 NC_009848.1 Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 1688681 hfq 5620892 hfq Bacillus pumilus SAFR-032 RNA-binding protein Hfq YP_001486867.1 1688460 D 315750 CDS YP_001486868.1 157692406 5620893 1688839..1689168 1 NC_009848.1 hypothetical protein 1689168 ymzC 5620893 ymzC Bacillus pumilus SAFR-032 hypothetical protein YP_001486868.1 1688839 D 315750 CDS YP_001486869.1 157692407 5620894 1689248..1689460 1 NC_009848.1 hypothetical protein 1689460 ymzA 5620894 ymzA Bacillus pumilus SAFR-032 hypothetical protein YP_001486869.1 1689248 D 315750 CDS YP_001486870.1 157692408 5620895 1689721..1690119 1 NC_009848.1 in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 1690119 nrdI 5620895 nrdI Bacillus pumilus SAFR-032 ribonucleotide reductase stimulatory protein YP_001486870.1 1689721 D 315750 CDS YP_001486871.1 157692409 5620896 1690079..1692181 1 NC_009848.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1692181 nrdE 5620896 nrdE Bacillus pumilus SAFR-032 ribonucleotide-diphosphate reductase subunit alpha YP_001486871.1 1690079 D 315750 CDS YP_001486872.1 157692410 5620897 1692199..1693179 1 NC_009848.1 B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1693179 nrdF 5620897 nrdF Bacillus pumilus SAFR-032 ribonucleotide-diphosphate reductase subunit beta YP_001486872.1 1692199 D 315750 CDS YP_001486873.1 157692411 5620898 1693264..1693881 1 NC_009848.1 MutT/NUDIX family hydrolase 1693881 ymaB 5620898 ymaB Bacillus pumilus SAFR-032 MutT/NUDIX family hydrolase YP_001486873.1 1693264 D 315750 CDS YP_001486874.1 157692412 5620899 complement(1693948..1694706) 1 NC_009848.1 N-acetylmuramoyl-L-alanine amidase 1694706 cwlC 5620899 cwlC Bacillus pumilus SAFR-032 N-acetylmuramoyl-L-alanine amidase YP_001486874.1 1693948 R 315750 CDS YP_001486875.1 157692413 5620900 1695027..1695986 1 NC_009848.1 SpoVJ; stage V sporulation protein K 1695986 spoVK 5620900 spoVK Bacillus pumilus SAFR-032 stage V sporulation protein K YP_001486875.1 1695027 D 315750 CDS YP_001486876.1 157692414 5620901 1696108..1697370 1 NC_009848.1 YnbA; HflX family GTP-binding protein 1697370 5620901 BPUM_1634 Bacillus pumilus SAFR-032 HflX family GTP-binding protein YP_001486876.1 1696108 D 315750 CDS YP_001486877.1 157692415 5620902 1697389..1698669 1 NC_009848.1 aluminum resistance protein 1698669 ynbB 5620902 ynbB Bacillus pumilus SAFR-032 aluminum resistance protein YP_001486877.1 1697389 D 315750 CDS YP_001486878.1 157692416 5620903 1698760..1699170 1 NC_009848.1 glutamine synthetase 1699170 glnR 5620903 glnR Bacillus pumilus SAFR-032 glutamine synthetase YP_001486878.1 1698760 D 315750 CDS YP_001486879.1 157692417 5620904 1699230..1700564 1 NC_009848.1 glutamate--ammonia ligase 1700564 glnA 5620904 glnA Bacillus pumilus SAFR-032 glutamate--ammonia ligase YP_001486879.1 1699230 D 315750 CDS YP_001486880.1 157692418 5620905 1701045..1701197 1 NC_009848.1 hypothetical protein 1701197 5620905 BPUM_1638 Bacillus pumilus SAFR-032 hypothetical protein YP_001486880.1 1701045 D 315750 CDS YP_001486881.1 157692419 5620906 1701404..1702471 1 NC_009848.1 patatin phospholipase 1702471 5620906 BPUM_1639 Bacillus pumilus SAFR-032 patatin phospholipase YP_001486881.1 1701404 D 315750 CDS YP_001486882.1 157692420 5620907 1703198..1703776 1 NC_009848.1 hypothetical protein 1703776 5620907 BPUM_1640 Bacillus pumilus SAFR-032 hypothetical protein YP_001486882.1 1703198 D 315750 CDS YP_001486883.1 157692421 5620908 1703943..1704146 1 NC_009848.1 hypothetical protein 1704146 5620908 BPUM_1641 Bacillus pumilus SAFR-032 hypothetical protein YP_001486883.1 1703943 D 315750 CDS YP_001486884.1 157692422 5620909 1704147..1704380 1 NC_009848.1 hypothetical protein 1704380 5620909 BPUM_1642 Bacillus pumilus SAFR-032 hypothetical protein YP_001486884.1 1704147 D 315750 CDS YP_001486885.1 157692423 5620910 1704344..1704493 1 NC_009848.1 hypothetical protein 1704493 5620910 BPUM_1643 Bacillus pumilus SAFR-032 hypothetical protein YP_001486885.1 1704344 D 315750 CDS YP_001486886.1 157692424 5620912 1705102..1705584 1 NC_009848.1 hypothetical protein 1705584 yjcP 5620912 yjcP Bacillus pumilus SAFR-032 hypothetical protein YP_001486886.1 1705102 D 315750 CDS YP_001486887.1 157692425 5620913 1705664..1705870 1 NC_009848.1 hypothetical protein 1705870 5620913 BPUM_1646 Bacillus pumilus SAFR-032 hypothetical protein YP_001486887.1 1705664 D 315750 CDS YP_001486888.1 157692426 5620916 1707586..1708482 1 NC_009848.1 membrane protein 1708482 yobJ 5620916 yobJ Bacillus pumilus SAFR-032 membrane protein YP_001486888.1 1707586 D 315750 CDS YP_001486889.1 157692427 5620917 1708517..1708795 1 NC_009848.1 hypothetical protein 1708795 5620917 BPUM_1650 Bacillus pumilus SAFR-032 hypothetical protein YP_001486889.1 1708517 D 315750 CDS YP_001486890.1 157692428 5620918 1709199..1710332 1 NC_009848.1 aspartate phosphatase response regulator 1710332 5620918 BPUM_1651 Bacillus pumilus SAFR-032 aspartate phosphatase response regulator YP_001486890.1 1709199 D 315750 CDS YP_001486891.1 157692429 5620919 1710723..1712648 1 NC_009848.1 hypothetical protein 1712648 5620919 BPUM_1652 Bacillus pumilus SAFR-032 hypothetical protein YP_001486891.1 1710723 D 315750 CDS YP_001486892.1 157692430 5620920 1712654..1713136 1 NC_009848.1 hypothetical protein 1713136 5620920 BPUM_1653 Bacillus pumilus SAFR-032 hypothetical protein YP_001486892.1 1712654 D 315750 CDS YP_001486893.1 157692431 5620921 1713310..1714032 1 NC_009848.1 hypothetical protein 1714032 5620921 BPUM_1654 Bacillus pumilus SAFR-032 hypothetical protein YP_001486893.1 1713310 D 315750 CDS YP_001486894.1 157692432 5620922 1714032..1714505 1 NC_009848.1 hypothetical protein 1714505 5620922 BPUM_1655 Bacillus pumilus SAFR-032 hypothetical protein YP_001486894.1 1714032 D 315750 CDS YP_001486895.1 157692433 5620923 complement(1714770..1715219) 1 NC_009848.1 hypothetical protein 1715219 5620923 BPUM_1656 Bacillus pumilus SAFR-032 hypothetical protein YP_001486895.1 1714770 R 315750 CDS YP_001486896.1 157692434 5620924 1715432..1715974 1 NC_009848.1 GNAT family acetyltransferase 1715974 5620924 BPUM_1657 Bacillus pumilus SAFR-032 GNAT family acetyltransferase YP_001486896.1 1715432 D 315750 CDS YP_001486897.1 157692435 5620925 1716115..1716696 1 NC_009848.1 phosphatidate phosphatase 1716696 5620925 BPUM_1658 Bacillus pumilus SAFR-032 phosphatidate phosphatase YP_001486897.1 1716115 D 315750 CDS YP_001486898.1 157692436 5620926 complement(1716749..1717120) 1 NC_009848.1 hypothetical protein 1717120 ydhG 5620926 ydhG Bacillus pumilus SAFR-032 hypothetical protein YP_001486898.1 1716749 R 315750 CDS YP_001486899.1 157692437 5620927 1717512..1718180 1 NC_009848.1 hypothetical protein 1718180 5620927 BPUM_1660 Bacillus pumilus SAFR-032 hypothetical protein YP_001486899.1 1717512 D 315750 CDS YP_001486900.1 157692438 5620928 1718255..1718599 1 NC_009848.1 hypothetical protein 1718599 5620928 BPUM_1661 Bacillus pumilus SAFR-032 hypothetical protein YP_001486900.1 1718255 D 315750 CDS YP_001486901.1 157692439 5620929 1718644..1719681 1 NC_009848.1 collagen triple helix protein; hypothetical protein 1719681 5620929 BPUM_1662 Bacillus pumilus SAFR-032 hypothetical protein YP_001486901.1 1718644 D 315750 CDS YP_001486902.1 157692440 5620930 1719939..1721051 1 NC_009848.1 aspartate phosphatase response regulator 1721051 5620930 BPUM_1663 Bacillus pumilus SAFR-032 aspartate phosphatase response regulator YP_001486902.1 1719939 D 315750 CDS YP_001486903.1 157692441 5620931 1721511..1721744 1 NC_009848.1 hypothetical protein 1721744 5620931 BPUM_1664 Bacillus pumilus SAFR-032 hypothetical protein YP_001486903.1 1721511 D 315750 CDS YP_001486904.1 157692442 5620932 complement(1721785..1722480) 1 NC_009848.1 hypothetical protein 1722480 yoaK 5620932 yoaK Bacillus pumilus SAFR-032 hypothetical protein YP_001486904.1 1721785 R 315750 CDS YP_001486905.1 157692443 5620933 complement(1722515..1724380) 1 NC_009848.1 catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase 1724380 ligD 5620933 ligD Bacillus pumilus SAFR-032 ATP-dependent DNA ligase YP_001486905.1 1722515 R 315750 CDS YP_001486906.1 157692444 5620934 1724497..1725345 1 NC_009848.1 Ku; Ku-like DNA end-binding protein 1725345 ykoV 5620934 ykoV Bacillus pumilus SAFR-032 Ku-like DNA end-binding protein YP_001486906.1 1724497 D 315750 CDS YP_001486907.1 157692445 5620935 complement(1725369..1725812) 1 NC_009848.1 hypothetical protein 1725812 ydaT 5620935 ydaT Bacillus pumilus SAFR-032 hypothetical protein YP_001486907.1 1725369 R 315750 CDS YP_001486908.1 157692446 5620936 1725976..1726446 1 NC_009848.1 possible fosfomycin resistance protein; glutathione transferase 1726446 5620936 BPUM_1669 Bacillus pumilus SAFR-032 glutathione transferase YP_001486908.1 1725976 D 315750 CDS YP_001486909.1 157692447 5620937 1726495..1726908 1 NC_009848.1 possible rrf2 transcriptional regulator; transcriptional regulator 1726908 5620937 BPUM_1670 Bacillus pumilus SAFR-032 transcriptional regulator YP_001486909.1 1726495 D 315750 CDS YP_001486910.1 157692448 5620938 1727010..1727861 1 NC_009848.1 nucleoside diphosphate glycosyl epimerase 1727861 5620938 BPUM_1671 Bacillus pumilus SAFR-032 nucleoside diphosphate glycosyl epimerase YP_001486910.1 1727010 D 315750 CDS YP_001486911.1 157692449 5620939 1728028..1728744 1 NC_009848.1 (S)-2-hydroxy-acid oxidase 1728744 yvfV 5620939 yvfV Bacillus pumilus SAFR-032 (S)-2-hydroxy-acid oxidase YP_001486911.1 1728028 D 315750 CDS YP_001486912.1 157692450 5620940 1728766..1730187 1 NC_009848.1 iron-sulfur cluster-binding protein 1730187 yvfW 5620940 yvfW Bacillus pumilus SAFR-032 iron-sulfur cluster-binding protein YP_001486912.1 1728766 D 315750 CDS YP_001486913.1 157692451 5620941 1730187..1730909 1 NC_009848.1 hypothetical protein 1730909 5620941 BPUM_1674 Bacillus pumilus SAFR-032 hypothetical protein YP_001486913.1 1730187 D 315750 CDS YP_001486914.1 157692452 5620942 1731056..1731964 1 NC_009848.1 DMT superfamily drug/metabolite transporter 1731964 5620942 BPUM_1675 Bacillus pumilus SAFR-032 DMT superfamily drug/metabolite transporter YP_001486914.1 1731056 D 315750 CDS YP_001486915.1 157692453 5620943 complement(1731977..1732168) 1 NC_009848.1 hypothetical protein 1732168 5620943 BPUM_1676 Bacillus pumilus SAFR-032 hypothetical protein YP_001486915.1 1731977 R 315750 CDS YP_001486916.1 157692454 5620944 1732279..1734495 1 NC_009848.1 possible PP2A phosphatase; phosphoprotein phosphatase 1734495 5620944 BPUM_1677 Bacillus pumilus SAFR-032 phosphoprotein phosphatase YP_001486916.1 1732279 D 315750 CDS YP_001486917.1 157692455 5620946 1735497..1736075 1 NC_009848.1 possible AcrR family transcriptional regulator; transcriptional regulator 1736075 yrhI 5620946 yrhI Bacillus pumilus SAFR-032 transcriptional regulator YP_001486917.1 1735497 D 315750 CDS YP_001486918.1 157692456 5620947 1736097..1739240 1 NC_009848.1 NADPH--hemoprotein reductase 1739240 yrhJ 5620947 yrhJ Bacillus pumilus SAFR-032 NADPH--hemoprotein reductase YP_001486918.1 1736097 D 315750 CDS YP_001486919.1 157692457 5620948 1739432..1740343 1 NC_009848.1 extracellular metalloprotease; glutamyl endopeptidase 1740343 mpr 5620948 mpr Bacillus pumilus SAFR-032 glutamyl endopeptidase YP_001486919.1 1739432 D 315750 CDS YP_001486920.1 157692458 5620949 1740557..1740985 1 NC_009848.1 sporulation-specific nuclease 1740985 nucB 5620949 nucB Bacillus pumilus SAFR-032 sporulation-specific nuclease YP_001486920.1 1740557 D 315750 CDS YP_001486921.1 157692459 5620950 1741124..1741972 1 NC_009848.1 hypothetical protein 1741972 yojH 5620950 yojH Bacillus pumilus SAFR-032 hypothetical protein YP_001486921.1 1741124 D 315750 CDS YP_001486922.1 157692460 5620951 complement(1742004..1742546) 1 NC_009848.1 hypothetical protein 1742546 yoeB 5620951 yoeB Bacillus pumilus SAFR-032 hypothetical protein YP_001486922.1 1742004 R 315750 CDS YP_001486923.1 157692461 5620952 1742841..1743275 1 NC_009848.1 hypothetical protein 1743275 5620952 BPUM_1685 Bacillus pumilus SAFR-032 hypothetical protein YP_001486923.1 1742841 D 315750 CDS YP_001486924.1 157692462 5620953 complement(1743321..1743941) 1 NC_009848.1 Represses a number of genes involved in the response to DNA damage; LexA repressor 1743941 lexA 5620953 lexA Bacillus pumilus SAFR-032 LexA repressor YP_001486924.1 1743321 R 315750 CDS YP_001486925.1 157692463 5620954 1744101..1744412 1 NC_009848.1 cell division suppressor protein YneA 1744412 yneA 5620954 yneA Bacillus pumilus SAFR-032 cell division suppressor protein YneA YP_001486925.1 1744101 D 315750 CDS YP_001486926.1 157692464 5620955 1744430..1745077 1 NC_009848.1 possible resolvase; recombinase 1745077 yneB 5620955 yneB Bacillus pumilus SAFR-032 recombinase YP_001486926.1 1744430 D 315750 CDS YP_001486927.1 157692465 5620956 1745147..1745377 1 NC_009848.1 hypothetical protein 1745377 ynzC 5620956 ynzC Bacillus pumilus SAFR-032 hypothetical protein YP_001486927.1 1745147 D 315750 CDS YP_001486928.1 157692466 5620957 1745565..1747568 1 NC_009848.1 transketolase 1747568 tkt 5620957 tkt Bacillus pumilus SAFR-032 transketolase YP_001486928.1 1745565 D 315750 CDS YP_001486929.1 157692467 5620958 1747766..1748212 1 NC_009848.1 YoxF; hypothetical protein 1748212 yneE 5620958 yneE Bacillus pumilus SAFR-032 hypothetical protein YP_001486929.1 1747766 D 315750 CDS YP_001486930.1 157692468 5620959 1748297..1748515 1 NC_009848.1 YoxG; hypothetical protein 1748515 yneF 5620959 yneF Bacillus pumilus SAFR-032 hypothetical protein YP_001486930.1 1748297 D 315750 CDS YP_001486931.1 157692469 5620960 complement(1748779..1748967) 1 NC_009848.1 hypothetical protein 1748967 ynzD 5620960 ynzD Bacillus pumilus SAFR-032 hypothetical protein YP_001486931.1 1748779 R 315750 CDS YP_001486932.1 157692470 5620961 1749161..1749868 1 NC_009848.1 stage V sporulation thiol-disulfide oxidoreductase CcdA, DsbD family membrane protein; stage V sporulation cytochrome c-type biogenesis protein 1749868 ccdA 5620961 ccdA Bacillus pumilus SAFR-032 stage V sporulation cytochrome c-type biogenesis protein YP_001486932.1 1749161 D 315750 CDS YP_001486933.1 157692471 5620962 1749963..1750445 1 NC_009848.1 cytochrome c defective protein YoxI CcdC; hypothetical protein 1750445 yneJ 5620962 yneJ Bacillus pumilus SAFR-032 hypothetical protein YP_001486933.1 1749963 D 315750 CDS YP_001486934.1 157692472 5620963 complement(1750466..1750894) 1 NC_009848.1 hypothetical protein 1750894 yneK 5620963 yneK Bacillus pumilus SAFR-032 hypothetical protein YP_001486934.1 1750466 R 315750 CDS YP_001486935.1 157692473 5620964 complement(1751659..1751805) 1 NC_009848.1 CotL; small acid-soluble spore protein P 1751805 sspP 5620964 sspP Bacillus pumilus SAFR-032 small acid-soluble spore protein P YP_001486935.1 1751659 R 315750 CDS YP_001486936.1 157692474 5620965 complement(1751822..1751968) 1 NC_009848.1 SASP O; found in forespore compartment; acid-soluble spore protein O 1751968 sspO 5620965 sspO Bacillus pumilus SAFR-032 acid-soluble spore protein O YP_001486936.1 1751822 R 315750 CDS YP_001486937.1 157692475 5620966 1752189..1754918 1 NC_009848.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1754918 citB 5620966 citB Bacillus pumilus SAFR-032 aconitate hydratase YP_001486937.1 1752189 D 315750 CDS YP_001486938.1 157692476 5620967 1754993..1755496 1 NC_009848.1 possible thioredoxin; hypothetical protein 1755496 yneN 5620967 yneN Bacillus pumilus SAFR-032 hypothetical protein YP_001486938.1 1754993 D 315750 CDS YP_001486939.1 157692477 5620968 1755559..1755693 1 NC_009848.1 hypothetical protein 1755693 5620968 BPUM_1701 Bacillus pumilus SAFR-032 hypothetical protein YP_001486939.1 1755559 D 315750 CDS YP_001486940.1 157692478 5620969 1755742..1755888 1 NC_009848.1 SASP N; found in forespore compartment; acid-soluble spore protein N 1755888 sspN 5620969 sspN Bacillus pumilus SAFR-032 acid-soluble spore protein N YP_001486940.1 1755742 D 315750 CDS YP_001486941.1 157692479 5620970 1755902..1756144 1 NC_009848.1 small acid-soluble spore protein Tlp 1756144 tlp 5620970 tlp Bacillus pumilus SAFR-032 small acid-soluble spore protein Tlp YP_001486941.1 1755902 D 315750 CDS YP_001486942.1 157692480 5620971 1756248..1756670 1 NC_009848.1 4-hydroxybenzoyl-CoA thioesterase 1756670 yneP 5620971 yneP Bacillus pumilus SAFR-032 4-hydroxybenzoyl-CoA thioesterase YP_001486942.1 1756248 D 315750 CDS YP_001486943.1 157692481 5620972 1756674..1756985 1 NC_009848.1 hypothetical protein 1756985 yneQ 5620972 yneQ Bacillus pumilus SAFR-032 hypothetical protein YP_001486943.1 1756674 D 315750 CDS YP_001486944.1 157692482 5620973 complement(1757025..1757312) 1 NC_009848.1 hypothetical protein 1757312 yneR 5620973 yneR Bacillus pumilus SAFR-032 hypothetical protein YP_001486944.1 1757025 R 315750 CDS YP_001486945.1 157692483 5620974 complement(1757414..1758001) 1 NC_009848.1 involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY 1758001 yneS 5620974 yneS Bacillus pumilus SAFR-032 putative glycerol-3-phosphate acyltransferase PlsY YP_001486945.1 1757414 R 315750 CDS YP_001486946.1 157692484 5620975 1758150..1758563 1 NC_009848.1 CoA-binding protein 1758563 yneT 5620975 yneT Bacillus pumilus SAFR-032 CoA-binding protein YP_001486946.1 1758150 D 315750 CDS YP_001486947.1 157692485 5620976 1758954..1760921 1 NC_009848.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1760921 parE 5620976 parE Bacillus pumilus SAFR-032 DNA topoisomerase IV subunit B YP_001486947.1 1758954 D 315750 CDS YP_001486948.1 157692486 5620977 1760924..1763362 1 NC_009848.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1763362 parC 5620977 parC Bacillus pumilus SAFR-032 DNA topoisomerase IV subunit A YP_001486948.1 1760924 D 315750 CDS YP_001486949.1 157692487 5620978 complement(1763414..1763539) 1 NC_009848.1 hypothetical protein 1763539 5620978 BPUM_1711 Bacillus pumilus SAFR-032 hypothetical protein YP_001486949.1 1763414 R 315750 CDS YP_001486950.1 157692488 5620979 complement(1763583..1763918) 1 NC_009848.1 hypothetical protein 1763918 ynfC 5620979 ynfC Bacillus pumilus SAFR-032 hypothetical protein YP_001486950.1 1763583 R 315750 CDS YP_001486951.1 157692489 5620980 complement(1764113..1765291) 1 NC_009848.1 major facilitator superfamily transporter 1765291 5620980 BPUM_1713 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001486951.1 1764113 R 315750 CDS YP_001486952.1 157692490 5620981 complement(1765343..1765492) 1 NC_009848.1 hypothetical protein 1765492 5620981 BPUM_1714 Bacillus pumilus SAFR-032 hypothetical protein YP_001486952.1 1765343 R 315750 CDS YP_001486953.1 157692491 5620983 complement(1766349..1767383) 1 NC_009848.1 NADH-dependent flavin dehydrogenase 1767383 5620983 BPUM_1716 Bacillus pumilus SAFR-032 NADH-dependent flavin dehydrogenase YP_001486953.1 1766349 R 315750 CDS YP_001486954.1 157692492 5620984 complement(1767502..1767933) 1 NC_009848.1 MarR family transcriptional regulator 1767933 5620984 BPUM_1717 Bacillus pumilus SAFR-032 MarR family transcriptional regulator YP_001486954.1 1767502 R 315750 CDS YP_001486955.1 157692493 5620988 complement(1770270..1770851) 1 NC_009848.1 possible NAD(P)H dehydrogenase (quinone); flavodoxin 1770851 5620988 BPUM_1721 Bacillus pumilus SAFR-032 flavodoxin YP_001486955.1 1770270 R 315750 CDS YP_001486956.1 157692494 5620989 1770975..1771319 1 NC_009848.1 MarR family transcriptional regulator 1771319 ydzF 5620989 ydzF Bacillus pumilus SAFR-032 MarR family transcriptional regulator YP_001486956.1 1770975 D 315750 CDS YP_001486957.1 157692495 5620990 complement(1771472..1772575) 1 NC_009848.1 threonine synthase 1772575 thrC2 5620990 thrC2 Bacillus pumilus SAFR-032 threonine synthase YP_001486957.1 1771472 R 315750 CDS YP_001486958.1 157692496 5620991 complement(1772648..1773022) 1 NC_009848.1 YjgH; endoribonuclease L-PSP 1773022 yabJA 5620991 yabJA Bacillus pumilus SAFR-032 endoribonuclease L-PSP YP_001486958.1 1772648 R 315750 CDS YP_001486959.1 157692497 5620992 complement(1773034..1773684) 1 NC_009848.1 transcriptional regulator 1773684 5620992 BPUM_1725 Bacillus pumilus SAFR-032 transcriptional regulator YP_001486959.1 1773034 R 315750 CDS YP_001486960.1 157692498 5620994 1774351..1774539 1 NC_009848.1 hypothetical protein 1774539 5620994 BPUM_1727 Bacillus pumilus SAFR-032 hypothetical protein YP_001486960.1 1774351 D 315750 CDS YP_001486961.1 157692499 5620995 complement(1774610..1774957) 1 NC_009848.1 hypothetical protein 1774957 5620995 BPUM_1728 Bacillus pumilus SAFR-032 hypothetical protein YP_001486961.1 1774610 R 315750 CDS YP_001486962.1 157692500 5620996 complement(1775036..1775461) 1 NC_009848.1 MarR family transcriptional regulator 1775461 5620996 BPUM_1729 Bacillus pumilus SAFR-032 MarR family transcriptional regulator YP_001486962.1 1775036 R 315750 CDS YP_001486963.1 157692501 5620997 complement(1775534..1776103) 1 NC_009848.1 TetR family transcriptional regulator 1776103 5620997 BPUM_1730 Bacillus pumilus SAFR-032 TetR family transcriptional regulator YP_001486963.1 1775534 R 315750 CDS YP_001486964.1 157692502 5620998 1776284..1776844 1 NC_009848.1 flavin reductase 1776844 5620998 BPUM_1731 Bacillus pumilus SAFR-032 flavin reductase YP_001486964.1 1776284 D 315750 CDS YP_001486965.1 157692503 5620999 1776886..1777797 1 NC_009848.1 hypothetical protein 1777797 5620999 BPUM_1732 Bacillus pumilus SAFR-032 hypothetical protein YP_001486965.1 1776886 D 315750 CDS YP_001486966.1 157692504 5621000 1777809..1778126 1 NC_009848.1 hypothetical protein 1778126 5621000 BPUM_1733 Bacillus pumilus SAFR-032 hypothetical protein YP_001486966.1 1777809 D 315750 CDS YP_001486967.1 157692505 5621002 1778641..1778802 1 NC_009848.1 hypothetical protein 1778802 5621002 BPUM_1735 Bacillus pumilus SAFR-032 hypothetical protein YP_001486967.1 1778641 D 315750 CDS YP_001486968.1 157692506 5621003 1778900..1779667 1 NC_009848.1 hypothetical protein 1779667 5621003 BPUM_1736 Bacillus pumilus SAFR-032 hypothetical protein YP_001486968.1 1778900 D 315750 CDS YP_001486969.1 157692507 5621004 complement(1779711..1780133) 1 NC_009848.1 blasticidin S deaminase; hypothetical protein 1780133 5621004 BPUM_1737 Bacillus pumilus SAFR-032 hypothetical protein YP_001486969.1 1779711 R 315750 CDS YP_001486970.1 157692508 5621005 complement(1780252..1780524) 1 NC_009848.1 hypothetical protein 1780524 5621005 BPUM_1738 Bacillus pumilus SAFR-032 hypothetical protein YP_001486970.1 1780252 R 315750 CDS YP_001486971.1 157692509 5621006 complement(1780727..1781653) 1 NC_009848.1 esterase 1781653 5621006 BPUM_1739 Bacillus pumilus SAFR-032 esterase YP_001486971.1 1780727 R 315750 CDS YP_001486972.1 157692510 5621007 complement(1781684..1782082) 1 NC_009848.1 transcriptional regulator 1782082 5621007 BPUM_1740 Bacillus pumilus SAFR-032 transcriptional regulator YP_001486972.1 1781684 R 315750 CDS YP_001486973.1 157692511 5621008 complement(1782310..1783776) 1 NC_009848.1 possible beta-glucosidase; glycosyl hydrolase 1783776 5621008 BPUM_1741 Bacillus pumilus SAFR-032 glycosyl hydrolase YP_001486973.1 1782310 R 315750 CDS YP_001486974.1 157692512 5621009 complement(1783800..1785692) 1 NC_009848.1 PTS family glucose/glucoside (glc) porter component IIBCA 1785692 5621009 BPUM_1742 Bacillus pumilus SAFR-032 PTS family glucose/glucoside (glc) porter component IIBCA YP_001486974.1 1783800 R 315750 CDS YP_001486975.1 157692513 5621010 complement(1785812..1786654) 1 NC_009848.1 transcription antiterminator 1786654 5621010 BPUM_1743 Bacillus pumilus SAFR-032 transcription antiterminator YP_001486975.1 1785812 R 315750 CDS YP_001486976.1 157692514 5621011 1787029..1787337 1 NC_009848.1 hypothetical protein 1787337 5621011 BPUM_1744 Bacillus pumilus SAFR-032 hypothetical protein YP_001486976.1 1787029 D 315750 CDS YP_001486977.1 157692515 5621012 complement(1787392..1788795) 1 NC_009848.1 sensor histidine kinase 1788795 5621012 BPUM_1745 Bacillus pumilus SAFR-032 sensor histidine kinase YP_001486977.1 1787392 R 315750 CDS YP_001486978.1 157692516 5621013 complement(1788798..1789505) 1 NC_009848.1 response regulator 1789505 5621013 BPUM_1746 Bacillus pumilus SAFR-032 response regulator YP_001486978.1 1788798 R 315750 CDS YP_001486979.1 157692517 5621014 complement(1789638..1790903) 1 NC_009848.1 glycosyl hydrolase 1790903 ynfF 5621014 ynfF Bacillus pumilus SAFR-032 glycosyl hydrolase YP_001486979.1 1789638 R 315750 CDS YP_001486980.1 157692518 5621015 complement(1790938..1792473) 1 NC_009848.1 xylanase D; endo-1,4-beta-xylanase 1792473 xynD 5621015 xynD Bacillus pumilus SAFR-032 endo-1,4-beta-xylanase YP_001486980.1 1790938 R 315750 CDS YP_001486981.1 157692519 5621016 complement(1792697..1794157) 1 NC_009848.1 methylmalonate-semialdehyde dehydrogenase 1794157 mmsA 5621016 mmsA Bacillus pumilus SAFR-032 methylmalonate-semialdehyde dehydrogenase YP_001486981.1 1792697 R 315750 CDS YP_001486982.1 157692520 5621017 complement(1794496..1795836) 1 NC_009848.1 alpha-galactosidase 1795836 melA 5621017 melA Bacillus pumilus SAFR-032 alpha-galactosidase YP_001486982.1 1794496 R 315750 CDS YP_001486983.1 157692521 5621018 complement(1795870..1796700) 1 NC_009848.1 sugar ABC transporter ATP-binding protein 1796700 amyC 5621018 amyC Bacillus pumilus SAFR-032 sugar ABC transporter ATP-binding protein YP_001486983.1 1795870 R 315750 CDS YP_001486984.1 157692522 5621019 complement(1796700..1797632) 1 NC_009848.1 sugar ABC transporter ATP-binding protein 1797632 amyD 5621019 amyD Bacillus pumilus SAFR-032 sugar ABC transporter ATP-binding protein YP_001486984.1 1796700 R 315750 CDS YP_001486985.1 157692523 5621020 complement(1797663..1798919) 1 NC_009848.1 sugar ABC transporter ATP-binding protein 1798919 msmE 5621020 msmE Bacillus pumilus SAFR-032 sugar ABC transporter ATP-binding protein YP_001486985.1 1797663 R 315750 CDS YP_001486986.1 157692524 5621021 complement(1799138..1800178) 1 NC_009848.1 transcriptional regulator 1800178 msmR 5621021 msmR Bacillus pumilus SAFR-032 transcriptional regulator YP_001486986.1 1799138 R 315750 CDS YP_001486987.1 157692525 5621022 complement(1800360..1801052) 1 NC_009848.1 allulose-6-phosphate 3-epimerase 1801052 5621022 BPUM_1755 Bacillus pumilus SAFR-032 allulose-6-phosphate 3-epimerase YP_001486987.1 1800360 R 315750 CDS YP_001486988.1 157692526 5621023 complement(1801070..1802332) 1 NC_009848.1 membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC 1802332 ulaA 5621023 ulaA Bacillus pumilus SAFR-032 PTS system ascorbate-specific transporter subunit IIC YP_001486988.1 1801070 R 315750 CDS YP_001486989.1 157692527 5621024 complement(1802358..1802624) 1 NC_009848.1 PTS system, lactose/cellobiose specific IIB subunit; PTS family L-ascorbate (L-asc) porter component IIB 1802624 sgaB 5621024 sgaB Bacillus pumilus SAFR-032 PTS family L-ascorbate (L-asc) porter component IIB YP_001486989.1 1802358 R 315750 CDS YP_001486990.1 157692528 5621025 complement(1802640..1804676) 1 NC_009848.1 PTS family L-ascorbate (L-asc) porter component IIA 1804676 5621025 BPUM_1758 Bacillus pumilus SAFR-032 PTS family L-ascorbate (L-asc) porter component IIA YP_001486990.1 1802640 R 315750 CDS YP_001486991.1 157692529 5621026 complement(1804997..1805437) 1 NC_009848.1 hypothetical protein 1805437 5621026 BPUM_1759 Bacillus pumilus SAFR-032 hypothetical protein YP_001486991.1 1804997 R 315750 CDS YP_001486992.1 157692530 5621027 1805787..1806011 1 NC_009848.1 hypothetical protein 1806011 5621027 BPUM_1760 Bacillus pumilus SAFR-032 hypothetical protein YP_001486992.1 1805787 D 315750 CDS YP_001486993.1 157692531 5621028 complement(1806077..1806535) 1 NC_009848.1 hypothetical protein 1806535 5621028 BPUM_1761 Bacillus pumilus SAFR-032 hypothetical protein YP_001486993.1 1806077 R 315750 CDS YP_001486994.1 157692532 5621029 complement(1806628..1806990) 1 NC_009848.1 hypothetical protein 1806990 5621029 BPUM_1762 Bacillus pumilus SAFR-032 hypothetical protein YP_001486994.1 1806628 R 315750 CDS YP_001486995.1 157692533 5621030 complement(1807141..1807473) 1 NC_009848.1 hypothetical protein 1807473 5621030 BPUM_1763 Bacillus pumilus SAFR-032 hypothetical protein YP_001486995.1 1807141 R 315750 CDS YP_001486996.1 157692534 5621031 complement(1807520..1809148) 1 NC_009848.1 hypothetical protein 1809148 5621031 BPUM_1764 Bacillus pumilus SAFR-032 hypothetical protein YP_001486996.1 1807520 R 315750 CDS YP_001486997.1 157692535 5621032 complement(1809524..1809994) 1 NC_009848.1 MarR family transcriptional regulator 1809994 5621032 BPUM_1765 Bacillus pumilus SAFR-032 MarR family transcriptional regulator YP_001486997.1 1809524 R 315750 CDS YP_001486998.1 157692536 5621033 1810041..1811633 1 NC_009848.1 major facilitator superfamily transporter 1811633 5621033 BPUM_1766 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001486998.1 1810041 D 315750 CDS YP_001486999.1 157692537 5621034 complement(1811673..1812542) 1 NC_009848.1 fructose-bisphosphate aldolase 1812542 5621034 BPUM_1767 Bacillus pumilus SAFR-032 fructose-bisphosphate aldolase YP_001486999.1 1811673 R 315750 CDS YP_001487000.1 157692538 5621035 complement(1812545..1813003) 1 NC_009848.1 PTS family fructose/mannitol porter component IIA 1813003 5621035 BPUM_1768 Bacillus pumilus SAFR-032 PTS family fructose/mannitol porter component IIA YP_001487000.1 1812545 R 315750 CDS YP_001487001.1 157692539 5621036 complement(1813019..1814434) 1 NC_009848.1 PTS system, fructose-specific enzyme II, BC component; PTS family fructose porter component IIBC 1814434 fruAA 5621036 fruAA Bacillus pumilus SAFR-032 PTS family fructose porter component IIBC YP_001487001.1 1813019 R 315750 CDS YP_001487002.1 157692540 5621037 complement(1814447..1815361) 1 NC_009848.1 1-phosphofructokinase 1815361 5621037 BPUM_1770 Bacillus pumilus SAFR-032 1-phosphofructokinase YP_001487002.1 1814447 R 315750 CDS YP_001487003.1 157692541 5621038 complement(1815492..1816268) 1 NC_009848.1 transcriptional regulator 1816268 5621038 BPUM_1771 Bacillus pumilus SAFR-032 transcriptional regulator YP_001487003.1 1815492 R 315750 CDS YP_001487004.1 157692542 5621039 1816425..1817834 1 NC_009848.1 phospholipase D 1817834 5621039 BPUM_1772 Bacillus pumilus SAFR-032 phospholipase D YP_001487004.1 1816425 D 315750 CDS YP_001487005.1 157692543 5621040 complement(1817845..1818330) 1 NC_009848.1 hypothetical protein 1818330 5621040 BPUM_1773 Bacillus pumilus SAFR-032 hypothetical protein YP_001487005.1 1817845 R 315750 CDS YP_001487006.1 157692544 5621041 complement(1818352..1819032) 1 NC_009848.1 Crp family transcriptional regulator 1819032 5621041 BPUM_1774 Bacillus pumilus SAFR-032 Crp family transcriptional regulator YP_001487006.1 1818352 R 315750 CDS YP_001487007.1 157692545 5621042 complement(1819046..1819471) 1 NC_009848.1 hypothetical protein 1819471 5621042 BPUM_1775 Bacillus pumilus SAFR-032 hypothetical protein YP_001487007.1 1819046 R 315750 CDS YP_001487008.1 157692546 5621043 1819683..1821110 1 NC_009848.1 aldehyde dehydrogenase 1821110 5621043 BPUM_1776 Bacillus pumilus SAFR-032 aldehyde dehydrogenase YP_001487008.1 1819683 D 315750 CDS YP_001487009.1 157692547 5621044 1821322..1823142 1 NC_009848.1 YvgR; sulfite reductase (NADPH) alpha subunit 1823142 cysJ 5621044 cysJ Bacillus pumilus SAFR-032 sulfite reductase (NADPH) alpha subunit YP_001487009.1 1821322 D 315750 CDS YP_001487010.1 157692548 5621045 1823180..1824898 1 NC_009848.1 hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 1824898 cysI 5621045 cysI Bacillus pumilus SAFR-032 sulfite reductase subunit beta YP_001487010.1 1823180 D 315750 CDS YP_001487011.1 157692549 5621046 complement(1824928..1826859) 1 NC_009848.1 acetate--CoA ligase 1826859 acsA2 5621046 acsA2 Bacillus pumilus SAFR-032 acetate--CoA ligase YP_001487011.1 1824928 R 315750 CDS YP_001487012.1 157692550 5621047 complement(1826877..1828406) 1 NC_009848.1 acetyl-CoA carboxylase 1828406 yngE 5621047 yngE Bacillus pumilus SAFR-032 acetyl-CoA carboxylase YP_001487012.1 1826877 R 315750 CDS YP_001487013.1 157692551 5621048 complement(1828419..1829201) 1 NC_009848.1 enoyl-CoA hydratase 1829201 yngF 5621048 yngF Bacillus pumilus SAFR-032 enoyl-CoA hydratase YP_001487013.1 1828419 R 315750 CDS YP_001487014.1 157692552 5621049 complement(1829216..1830124) 1 NC_009848.1 catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; hydroxymethylglutaryl-CoA lyase 1830124 yngG 5621049 yngG Bacillus pumilus SAFR-032 hydroxymethylglutaryl-CoA lyase YP_001487014.1 1829216 R 315750 CDS YP_001487015.1 157692553 5621050 complement(1830136..1830351) 1 NC_009848.1 acetyl-CoA carboxylase 1830351 pycAA 5621050 pycAA Bacillus pumilus SAFR-032 acetyl-CoA carboxylase YP_001487015.1 1830136 R 315750 CDS YP_001487016.1 157692554 5621051 complement(1830348..1831697) 1 NC_009848.1 acetyl-CoA carboxylase alpha subunit 1831697 yngH 5621051 yngH Bacillus pumilus SAFR-032 acetyl-CoA carboxylase alpha subunit YP_001487016.1 1830348 R 315750 CDS YP_001487017.1 157692555 5621052 complement(1831706..1833343) 1 NC_009848.1 long-chain-fatty-acid--CoA ligase 1833343 yngI 5621052 yngI Bacillus pumilus SAFR-032 long-chain-fatty-acid--CoA ligase YP_001487017.1 1831706 R 315750 CDS YP_001487018.1 157692556 5621053 complement(1833386..1834528) 1 NC_009848.1 acyl-CoA dehydrogenase 1834528 yngJ 5621053 yngJ Bacillus pumilus SAFR-032 acyl-CoA dehydrogenase YP_001487018.1 1833386 R 315750 CDS YP_001487019.1 157692557 5621054 complement(1834671..1836089) 1 NC_009848.1 hypothetical protein 1836089 5621054 BPUM_1787 Bacillus pumilus SAFR-032 hypothetical protein YP_001487019.1 1834671 R 315750 CDS YP_001487020.1 157692558 5621055 complement(1836234..1837040) 1 NC_009848.1 protein-tyrosine-phosphatase 1837040 ptp 5621055 ptp Bacillus pumilus SAFR-032 protein-tyrosine-phosphatase YP_001487020.1 1836234 R 315750 CDS YP_001487021.1 157692559 5621056 1837163..1837927 1 NC_009848.1 DeoR family transcriptional regulator 1837927 iolR 5621056 iolR Bacillus pumilus SAFR-032 DeoR family transcriptional regulator YP_001487021.1 1837163 D 315750 CDS YP_001487022.1 157692560 5621057 complement(1837947..1838552) 1 NC_009848.1 hypothetical protein 1838552 5621057 BPUM_1790 Bacillus pumilus SAFR-032 hypothetical protein YP_001487022.1 1837947 R 315750 CDS YP_001487023.1 157692561 5621058 1838660..1839784 1 NC_009848.1 carbohydrate diacid transcriptional regulator 1839784 5621058 BPUM_1791 Bacillus pumilus SAFR-032 carbohydrate diacid transcriptional regulator YP_001487023.1 1838660 D 315750 CDS YP_001487024.1 157692562 5621059 1839856..1841271 1 NC_009848.1 (S)-2-hydroxy-acid oxidase subunit D 1841271 glcD 5621059 glcD Bacillus pumilus SAFR-032 (S)-2-hydroxy-acid oxidase subunit D YP_001487024.1 1839856 D 315750 CDS YP_001487025.1 157692563 5621060 1841268..1842611 1 NC_009848.1 (S)-2-hydroxy-acid oxidase subunit F 1842611 glcF 5621060 glcF Bacillus pumilus SAFR-032 (S)-2-hydroxy-acid oxidase subunit F YP_001487025.1 1841268 D 315750 CDS YP_001487026.1 157692564 5621061 1842676..1844169 1 NC_009848.1 spore germination protein A 1844169 gerA 5621061 gerA Bacillus pumilus SAFR-032 spore germination protein A YP_001487026.1 1842676 D 315750 CDS YP_001487027.1 157692565 5621062 1844182..1845282 1 NC_009848.1 spore germination protein B; APC family amino acid-polyamine-organocation transporter 1845282 gerB 5621062 gerB Bacillus pumilus SAFR-032 APC family amino acid-polyamine-organocation transporter YP_001487027.1 1844182 D 315750 CDS YP_001487028.1 157692566 5621063 1845261..1846379 1 NC_009848.1 spore germination protein C 1846379 gerC 5621063 gerC Bacillus pumilus SAFR-032 spore germination protein C YP_001487028.1 1845261 D 315750 CDS YP_001487029.1 157692567 5621064 complement(1846392..1846574) 1 NC_009848.1 hypothetical protein 1846574 5621064 BPUM_1797 Bacillus pumilus SAFR-032 hypothetical protein YP_001487029.1 1846392 R 315750 CDS YP_001487030.1 157692568 5621066 complement(1847189..1847419) 1 NC_009848.1 hypothetical protein 1847419 5621066 BPUM_1799 Bacillus pumilus SAFR-032 hypothetical protein YP_001487030.1 1847189 R 315750 CDS YP_001487031.1 157692569 5621067 1847690..1848292 1 NC_009848.1 hypothetical protein 1848292 5621067 BPUM_1800 Bacillus pumilus SAFR-032 hypothetical protein YP_001487031.1 1847690 D 315750 CDS YP_001487032.1 157692570 5621068 complement(1848333..1849154) 1 NC_009848.1 catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase 1849154 hemD 5621068 hemD Bacillus pumilus SAFR-032 uroporphyrinogen-III synthase YP_001487032.1 1848333 R 315750 CDS YP_001487033.1 157692571 5621069 1849298..1849918 1 NC_009848.1 GPR1/FUN34/yaaH family protein; hypothetical protein 1849918 5621069 BPUM_1802 Bacillus pumilus SAFR-032 hypothetical protein YP_001487033.1 1849298 D 315750 CDS YP_001487034.1 157692572 5621070 complement(1849957..1850991) 1 NC_009848.1 flavine monooxygenase 1850991 yvbT 5621070 yvbT Bacillus pumilus SAFR-032 flavine monooxygenase YP_001487034.1 1849957 R 315750 CDS YP_001487035.1 157692573 5621071 1851151..1856748 1 NC_009848.1 triple helix repeat-containing collagen 1856748 5621071 BPUM_1804 Bacillus pumilus SAFR-032 triple helix repeat-containing collagen YP_001487035.1 1851151 D 315750 CDS YP_001487036.1 157692574 5621072 complement(1856768..1857328) 1 NC_009848.1 chloramphenicol O-acetyltransferase 1857328 cat86 5621072 cat86 Bacillus pumilus SAFR-032 chloramphenicol O-acetyltransferase YP_001487036.1 1856768 R 315750 CDS YP_001487037.1 157692575 5621073 complement(1857393..1858760) 1 NC_009848.1 yoeA; MATE family multi-antimicrobial extrusion protein 1858760 5621073 BPUM_1806 Bacillus pumilus SAFR-032 MATE family multi-antimicrobial extrusion protein YP_001487037.1 1857393 R 315750 CDS YP_001487038.1 157692576 5621074 complement(1858780..1860264) 1 NC_009848.1 S13 family carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 1860264 dacC 5621074 dacC Bacillus pumilus SAFR-032 serine-type D-Ala-D-Ala carboxypeptidase YP_001487038.1 1858780 R 315750 CDS YP_001487039.1 157692577 5621075 complement(1860392..1861372) 1 NC_009848.1 pectinesterase 1861372 pme 5621075 pme Bacillus pumilus SAFR-032 pectinesterase YP_001487039.1 1860392 R 315750 CDS YP_001487040.1 157692578 5621076 complement(1861467..1862201) 1 NC_009848.1 hypothetical protein 1862201 yetF 5621076 yetF Bacillus pumilus SAFR-032 hypothetical protein YP_001487040.1 1861467 R 315750 CDS YP_001487041.1 157692579 5621077 complement(1862229..1862552) 1 NC_009848.1 nitrite reductase (NAD(P)H) small subunit 1862552 nasE 5621077 nasE Bacillus pumilus SAFR-032 nitrite reductase (NAD(P)H) small subunit YP_001487041.1 1862229 R 315750 CDS YP_001487042.1 157692580 5621078 complement(1862567..1864987) 1 NC_009848.1 nitrite reductase (NAD(P)H) large subunit 1864987 nasD 5621078 nasD Bacillus pumilus SAFR-032 nitrite reductase (NAD(P)H) large subunit YP_001487042.1 1862567 R 315750 CDS YP_001487043.1 157692581 5621079 1865497..1866852 1 NC_009848.1 transposase 1866852 5621079 BPUM_1812 Bacillus pumilus SAFR-032 transposase YP_001487043.1 1865497 D 315750 CDS YP_001487044.1 157692582 5621080 complement(1866990..1868474) 1 NC_009848.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 1868474 gltD 5621080 gltD Bacillus pumilus SAFR-032 glutamate synthase subunit beta YP_001487044.1 1866990 R 315750 CDS YP_001487045.1 157692583 5621081 complement(1868491..1873062) 1 NC_009848.1 glutamate synthase (NADPH) large subunit 1873062 gltA 5621081 gltA Bacillus pumilus SAFR-032 glutamate synthase (NADPH) large subunit YP_001487045.1 1868491 R 315750 CDS YP_001487046.1 157692584 5621082 1873216..1874118 1 NC_009848.1 LysR family transcriptional regulator 1874118 gltC 5621082 gltC Bacillus pumilus SAFR-032 LysR family transcriptional regulator YP_001487046.1 1873216 D 315750 CDS YP_001487047.1 157692585 5621083 1874213..1875946 1 NC_009848.1 ABC transporter ATP-binding protein 1875946 yfiB 5621083 yfiB Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001487047.1 1874213 D 315750 CDS YP_001487048.1 157692586 5621084 1875955..1877772 1 NC_009848.1 ABC transporter ATP-binding protein 1877772 yfiC 5621084 yfiC Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001487048.1 1875955 D 315750 CDS YP_001487049.1 157692587 5621085 complement(1877819..1878640) 1 NC_009848.1 multidrug-efflux transporter 2 regulator bmr2R bmtR; MerR family transcriptional regulator 1878640 bltR 5621085 bltR Bacillus pumilus SAFR-032 MerR family transcriptional regulator YP_001487049.1 1877819 R 315750 CDS YP_001487050.1 157692588 5621086 1878691..1879296 1 NC_009848.1 acetyltransferase 1879296 yrkN 5621086 yrkN Bacillus pumilus SAFR-032 acetyltransferase YP_001487050.1 1878691 D 315750 CDS YP_001487051.1 157692589 5621087 complement(1879416..1880771) 1 NC_009848.1 transposase 1880771 5621087 BPUM_1820 Bacillus pumilus SAFR-032 transposase YP_001487051.1 1879416 R 315750 CDS YP_001487052.1 157692590 5621088 complement(1880869..1881429) 1 NC_009848.1 ribosomal-protein-alanine N-acetyltransferase 1881429 yjcK 5621088 yjcK Bacillus pumilus SAFR-032 ribosomal-protein-alanine N-acetyltransferase YP_001487052.1 1880869 R 315750 CDS YP_001487053.1 157692591 5621089 complement(1881514..1882782) 1 NC_009848.1 glutamate-5-semialdehyde dehydrogenase 1882782 proA2 5621089 proA2 Bacillus pumilus SAFR-032 glutamate-5-semialdehyde dehydrogenase YP_001487053.1 1881514 R 315750 CDS YP_001487054.1 157692592 5621090 complement(1882796..1883914) 1 NC_009848.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1883914 proJ 5621090 proJ Bacillus pumilus SAFR-032 gamma-glutamyl kinase YP_001487054.1 1882796 R 315750 CDS YP_001487055.1 157692593 5621091 complement(1883942..1884739) 1 NC_009848.1 YoxE; pyrroline-5-carboxylate reductase 1 1884739 proH 5621091 proH Bacillus pumilus SAFR-032 pyrroline-5-carboxylate reductase 1 YP_001487055.1 1883942 R 315750 CDS YP_001487056.1 157692594 5621092 1885211..1886407 1 NC_009848.1 YjiB; cytochrome P450 1886407 5621092 BPUM_1825 Bacillus pumilus SAFR-032 cytochrome P450 YP_001487056.1 1885211 D 315750 CDS YP_001487057.1 157692595 5621093 1886529..1888571 1 NC_009848.1 molybdopterin dehydrogenase 1888571 yoaE 5621093 yoaE Bacillus pumilus SAFR-032 molybdopterin dehydrogenase YP_001487057.1 1886529 D 315750 CDS YP_001487058.1 157692596 5621094 complement(1888816..1889502) 1 NC_009848.1 glycoside hydrolase 1889502 5621094 BPUM_1827 Bacillus pumilus SAFR-032 glycoside hydrolase YP_001487058.1 1888816 R 315750 CDS YP_001487059.1 157692597 5621095 complement(1889593..1891092) 1 NC_009848.1 xylulokinase 1891092 xylB 5621095 xylB Bacillus pumilus SAFR-032 xylulokinase YP_001487059.1 1889593 R 315750 CDS YP_001487060.1 157692598 5621096 complement(1891128..1892465) 1 NC_009848.1 catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 1892465 xylA 5621096 xylA Bacillus pumilus SAFR-032 xylose isomerase YP_001487060.1 1891128 R 315750 CDS YP_001487061.1 157692599 5621097 1892679..1893839 1 NC_009848.1 transcriptional regulator 1893839 xylR 5621097 xylR Bacillus pumilus SAFR-032 transcriptional regulator YP_001487061.1 1892679 D 315750 CDS YP_001487062.1 157692600 5621098 complement(1893889..1895493) 1 NC_009848.1 xylan 1,4-beta-xylosidase 1895493 xynB 5621098 xynB Bacillus pumilus SAFR-032 xylan 1,4-beta-xylosidase YP_001487062.1 1893889 R 315750 CDS YP_001487063.1 157692601 5621099 complement(1895517..1896908) 1 NC_009848.1 GPH family glycoside-pentoside-hexuronide:cation symporter 1896908 xynP 5621099 xynP Bacillus pumilus SAFR-032 GPH family glycoside-pentoside-hexuronide:cation symporter YP_001487063.1 1895517 R 315750 CDS YP_001487064.1 157692602 5621100 complement(1897423..1897755) 1 NC_009848.1 secretion chaperone CsaA 1897755 csaA 5621100 csaA Bacillus pumilus SAFR-032 secretion chaperone CsaA YP_001487064.1 1897423 R 315750 CDS YP_001487065.1 157692603 5621101 1897985..1898464 1 NC_009848.1 hypothetical protein 1898464 ywmF 5621101 ywmF Bacillus pumilus SAFR-032 hypothetical protein YP_001487065.1 1897985 D 315750 CDS YP_001487066.1 157692604 5621102 complement(1898454..1900085) 1 NC_009848.1 YndJ; hypothetical protein 1900085 5621102 BPUM_1835 Bacillus pumilus SAFR-032 hypothetical protein YP_001487066.1 1898454 R 315750 CDS YP_001487067.1 157692605 5621103 complement(1900078..1900683) 1 NC_009848.1 hypothetical protein 1900683 5621103 BPUM_1836 Bacillus pumilus SAFR-032 hypothetical protein YP_001487067.1 1900078 R 315750 CDS YP_001487068.1 157692606 5621104 complement(1900646..1901527) 1 NC_009848.1 hypothetical protein 1901527 5621104 BPUM_1837 Bacillus pumilus SAFR-032 hypothetical protein YP_001487068.1 1900646 R 315750 CDS YP_001487069.1 157692607 5621105 complement(1901676..1902248) 1 NC_009848.1 TetR family transcriptional regulator 1902248 yobS 5621105 yobS Bacillus pumilus SAFR-032 TetR family transcriptional regulator YP_001487069.1 1901676 R 315750 CDS YP_001487070.1 157692608 5621106 complement(1902252..1902971) 1 NC_009848.1 zinc (Zn2+)-dependent hydrolase 1902971 5621106 BPUM_1839 Bacillus pumilus SAFR-032 zinc (Zn2+)-dependent hydrolase YP_001487070.1 1902252 R 315750 CDS YP_001487071.1 157692609 5621107 complement(1903009..1903482) 1 NC_009848.1 hypothetical protein 1903482 5621107 BPUM_1840 Bacillus pumilus SAFR-032 hypothetical protein YP_001487071.1 1903009 R 315750 CDS YP_001487072.1 157692610 5621108 complement(1903537..1904469) 1 NC_009848.1 transcriptional regulator 1904469 yobV 5621108 yobV Bacillus pumilus SAFR-032 transcriptional regulator YP_001487072.1 1903537 R 315750 CDS YP_001487073.1 157692611 5621109 1904588..1905112 1 NC_009848.1 hypothetical protein 1905112 5621109 BPUM_1842 Bacillus pumilus SAFR-032 hypothetical protein YP_001487073.1 1904588 D 315750 CDS YP_001487074.1 157692612 5621110 complement(1905348..1905677) 1 NC_009848.1 transcription regulator ArsR 1905677 yozA 5621110 yozA Bacillus pumilus SAFR-032 transcription regulator ArsR YP_001487074.1 1905348 R 315750 CDS YP_001487075.1 157692613 5621111 1905864..1907189 1 NC_009848.1 APC family amino acid-polyamine-organocation transporter 1907189 5621111 BPUM_1844 Bacillus pumilus SAFR-032 APC family amino acid-polyamine-organocation transporter YP_001487075.1 1905864 D 315750 CDS YP_001487076.1 157692614 5621112 1907287..1907949 1 NC_009848.1 hypothetical protein 1907949 yocA 5621112 yocA Bacillus pumilus SAFR-032 hypothetical protein YP_001487076.1 1907287 D 315750 CDS YP_001487077.1 157692615 5621113 complement(1908183..1909100) 1 NC_009848.1 carboxyvinyl-carboxyphosphonate phosphorylmutase 1909100 yqiQ 5621113 yqiQ Bacillus pumilus SAFR-032 carboxyvinyl-carboxyphosphonate phosphorylmutase YP_001487077.1 1908183 R 315750 CDS YP_001487078.1 157692616 5621114 complement(1909113..1910549) 1 NC_009848.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 1910549 prpD 5621114 prpD Bacillus pumilus SAFR-032 2-methylcitrate dehydratase YP_001487078.1 1909113 R 315750 CDS YP_001487079.1 157692617 5621115 complement(1910552..1911694) 1 NC_009848.1 forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle, glyoxylate cycle and respiration; citrate synthase 3 1911694 mmgD 5621115 mmgD Bacillus pumilus SAFR-032 citrate synthase 3 YP_001487079.1 1910552 R 315750 CDS YP_001487080.1 157692618 5621116 complement(1911863..1912402) 1 NC_009848.1 hypothetical protein 1912402 yozB 5621116 yozB Bacillus pumilus SAFR-032 hypothetical protein YP_001487080.1 1911863 R 315750 CDS YP_001487081.1 157692619 5621117 1912529..1913113 1 NC_009848.1 hypothetical protein 1913113 yocC 5621117 yocC Bacillus pumilus SAFR-032 hypothetical protein YP_001487081.1 1912529 D 315750 CDS YP_001487082.1 157692620 5621118 complement(1913267..1914058) 1 NC_009848.1 cell wall protein 1914058 yocH 5621118 yocH Bacillus pumilus SAFR-032 cell wall protein YP_001487082.1 1913267 R 315750 CDS YP_001487083.1 157692621 5621119 complement(1914315..1916096) 1 NC_009848.1 ATP-dependent helicase 1916096 yocI 5621119 yocI Bacillus pumilus SAFR-032 ATP-dependent helicase YP_001487083.1 1914315 R 315750 CDS YP_001487084.1 157692622 5621121 complement(1916548..1916955) 1 NC_009848.1 general stress protein 1916955 yocK 5621121 yocK Bacillus pumilus SAFR-032 general stress protein YP_001487084.1 1916548 R 315750 CDS YP_001487085.1 157692623 5621122 complement(1917140..1917787) 1 NC_009848.1 hypothetical protein 1917787 yhfK 5621122 yhfK Bacillus pumilus SAFR-032 hypothetical protein YP_001487085.1 1917140 R 315750 CDS YP_001487086.1 157692624 5621123 complement(1917965..1918303) 1 NC_009848.1 hypothetical protein 1918303 yozO 5621123 yozO Bacillus pumilus SAFR-032 hypothetical protein YP_001487086.1 1917965 R 315750 CDS YP_001487087.1 157692625 5621124 complement(1918770..1918982) 1 NC_009848.1 hypothetical protein 1918982 yozC 5621124 yozC Bacillus pumilus SAFR-032 hypothetical protein YP_001487087.1 1918770 R 315750 CDS YP_001487088.1 157692626 5621125 1919196..1920680 1 NC_009848.1 aldehyde dehydrogenase 1920680 dhaS 5621125 dhaS Bacillus pumilus SAFR-032 aldehyde dehydrogenase YP_001487088.1 1919196 D 315750 CDS YP_001487089.1 157692627 5621126 1920783..1922657 1 NC_009848.1 squalene-hopene cyclase 1922657 sqhC 5621126 sqhC Bacillus pumilus SAFR-032 squalene-hopene cyclase YP_001487089.1 1920783 D 315750 CDS YP_001487090.1 157692628 5621127 1922650..1923471 1 NC_009848.1 iron (Fe) superoxide dismutase 1923471 sodF 5621127 sodF Bacillus pumilus SAFR-032 iron (Fe) superoxide dismutase YP_001487090.1 1922650 D 315750 CDS YP_001487091.1 157692629 5621128 1923622..1924572 1 NC_009848.1 BASS family bile acid:sodium (Na+) symporter 1924572 yocS 5621128 yocS Bacillus pumilus SAFR-032 BASS family bile acid:sodium (Na+) symporter YP_001487091.1 1923622 D 315750 CDS YP_001487092.1 157692630 5621129 complement(1924607..1925863) 1 NC_009848.1 component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase 1925863 odhB 5621129 odhB Bacillus pumilus SAFR-032 dihydrolipoamide succinyltransferase YP_001487092.1 1924607 R 315750 CDS YP_001487093.1 157692631 5621130 complement(1925878..1928712) 1 NC_009848.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 1928712 sucA 5621130 sucA Bacillus pumilus SAFR-032 2-oxoglutarate dehydrogenase E1 component YP_001487093.1 1925878 R 315750 CDS YP_001487094.1 157692632 5621131 complement(1928938..1930854) 1 NC_009848.1 regulator of nitric oxide reductase 1930854 yojO 5621131 yojO Bacillus pumilus SAFR-032 regulator of nitric oxide reductase YP_001487094.1 1928938 R 315750 CDS YP_001487095.1 157692633 5621132 complement(1930866..1931744) 1 NC_009848.1 nitric oxide reductase 1931744 5621132 BPUM_1864 Bacillus pumilus SAFR-032 nitric oxide reductase YP_001487095.1 1930866 R 315750 CDS YP_001487096.1 157692634 5621133 complement(1931834..1932454) 1 NC_009848.1 copper/zinc (Cu/Zn) superoxide dismutase 1932454 yojM 5621133 yojM Bacillus pumilus SAFR-032 copper/zinc (Cu/Zn) superoxide dismutase YP_001487096.1 1931834 R 315750 CDS YP_001487097.1 157692635 5621135 complement(1934235..1934849) 1 NC_009848.1 YojJ; hypothetical protein 1934849 5621135 BPUM_1867 Bacillus pumilus SAFR-032 hypothetical protein YP_001487097.1 1934235 R 315750 CDS YP_001487098.1 157692636 5621136 1935113..1936474 1 NC_009848.1 NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein 1936474 5621136 BPUM_1868 Bacillus pumilus SAFR-032 multidrug efflux protein YP_001487098.1 1935113 D 315750 CDS YP_001487099.1 157692637 5621137 complement(1936520..1937185) 1 NC_009848.1 hypothetical protein 1937185 5621137 BPUM_1869 Bacillus pumilus SAFR-032 hypothetical protein YP_001487099.1 1936520 R 315750 CDS YP_001487100.1 157692638 5621138 complement(1937204..1937554) 1 NC_009848.1 YojF; hypothetical protein 1937554 5621138 BPUM_1870 Bacillus pumilus SAFR-032 hypothetical protein YP_001487100.1 1937204 R 315750 CDS YP_001487101.1 157692639 5621139 complement(1937551..1937832) 1 NC_009848.1 hypothetical protein 1937832 5621139 BPUM_1871 Bacillus pumilus SAFR-032 hypothetical protein YP_001487101.1 1937551 R 315750 CDS YP_001487102.1 157692640 5621140 complement(1937911..1938816) 1 NC_009848.1 YojE; DMT superfamily drug/metabolite transporter 1938816 rarD 5621140 rarD Bacillus pumilus SAFR-032 DMT superfamily drug/metabolite transporter YP_001487102.1 1937911 R 315750 CDS YP_001487103.1 157692641 5621141 1938912..1939385 1 NC_009848.1 hypothetical protein 1939385 yozR 5621141 yozR Bacillus pumilus SAFR-032 hypothetical protein YP_001487103.1 1938912 D 315750 CDS YP_001487104.1 157692642 5621142 complement(1939426..1939644) 1 NC_009848.1 hypothetical protein 1939644 5621142 BPUM_1874 Bacillus pumilus SAFR-032 hypothetical protein YP_001487104.1 1939426 R 315750 CDS YP_001487105.1 157692643 5621143 complement(1939720..1940052) 1 NC_009848.1 transcriptional regulator 1940052 yodB 5621143 yodB Bacillus pumilus SAFR-032 transcriptional regulator YP_001487105.1 1939720 R 315750 CDS YP_001487106.1 157692644 5621144 1940192..1940809 1 NC_009848.1 nitroreductase 1940809 5621144 BPUM_1876 Bacillus pumilus SAFR-032 nitroreductase YP_001487106.1 1940192 D 315750 CDS YP_001487107.1 157692645 5621145 1941046..1941249 1 NC_009848.1 hypothetical protein 1941249 5621145 BPUM_1877 Bacillus pumilus SAFR-032 hypothetical protein YP_001487107.1 1941046 D 315750 CDS YP_001487108.1 157692646 5621146 1941249..1942742 1 NC_009848.1 SSS family solute/sodium (Na+) symporter 1942742 yodF 5621146 yodF Bacillus pumilus SAFR-032 SSS family solute/sodium (Na+) symporter YP_001487108.1 1941249 D 315750 CDS YP_001487109.1 157692647 5621147 complement(1942821..1943735) 1 NC_009848.1 O-methyltransferase 1943735 5621147 BPUM_1879 Bacillus pumilus SAFR-032 O-methyltransferase YP_001487109.1 1942821 R 315750 CDS YP_001487110.1 157692648 5621148 complement(1944081..1945466) 1 NC_009848.1 peptidase 1945466 ctpA 5621148 ctpA Bacillus pumilus SAFR-032 peptidase YP_001487110.1 1944081 R 315750 CDS YP_001487111.1 157692649 5621149 1945618..1946316 1 NC_009848.1 YodH; hypothetical protein 1946316 5621149 BPUM_1881 Bacillus pumilus SAFR-032 hypothetical protein YP_001487111.1 1945618 D 315750 CDS YP_001487112.1 157692650 5621150 1946409..1946660 1 NC_009848.1 spore protein YodI 1946660 yodI 5621150 yodI Bacillus pumilus SAFR-032 spore protein YodI YP_001487112.1 1946409 D 315750 CDS YP_001487113.1 157692651 5621151 complement(1946711..1947541) 1 NC_009848.1 M15 family peptidase; serine-type D-Ala-D-Ala carboxypeptidase 1947541 yodJ 5621151 yodJ Bacillus pumilus SAFR-032 serine-type D-Ala-D-Ala carboxypeptidase YP_001487113.1 1946711 R 315750 CDS YP_001487114.1 157692652 5621152 complement(1947610..1948305) 1 NC_009848.1 catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase 1948305 deoD 5621152 deoD Bacillus pumilus SAFR-032 purine nucleoside phosphorylase YP_001487114.1 1947610 R 315750 CDS YP_001487115.1 157692653 5621153 complement(1948419..1948736) 1 NC_009848.1 hypothetical protein 1948736 5621153 BPUM_1885 Bacillus pumilus SAFR-032 hypothetical protein YP_001487115.1 1948419 R 315750 CDS YP_001487116.1 157692654 5621154 complement(1948791..1949399) 1 NC_009848.1 phosphatase 1949399 5621154 BPUM_1886 Bacillus pumilus SAFR-032 phosphatase YP_001487116.1 1948791 R 315750 CDS YP_001487117.1 157692655 5621155 complement(1949448..1949618) 1 NC_009848.1 hypothetical protein 1949618 yozD 5621155 yozD Bacillus pumilus SAFR-032 hypothetical protein YP_001487117.1 1949448 R 315750 CDS YP_001487118.1 157692656 5621156 1949639..1949872 1 NC_009848.1 hypothetical protein 1949872 5621156 BPUM_1888 Bacillus pumilus SAFR-032 hypothetical protein YP_001487118.1 1949639 D 315750 CDS YP_001487119.1 157692657 5621157 complement(1949869..1950549) 1 NC_009848.1 hypothetical protein 1950549 yodN 5621157 yodN Bacillus pumilus SAFR-032 hypothetical protein YP_001487119.1 1949869 R 315750 CDS YP_001487120.1 157692658 5621158 complement(1950694..1950918) 1 NC_009848.1 hypothetical protein 1950918 yozE 5621158 yozE Bacillus pumilus SAFR-032 hypothetical protein YP_001487120.1 1950694 R 315750 CDS YP_001487121.1 157692659 5621159 complement(1950997..1951278) 1 NC_009848.1 hypothetical protein 1951278 5621159 BPUM_1891 Bacillus pumilus SAFR-032 hypothetical protein YP_001487121.1 1950997 R 315750 CDS YP_001487122.1 157692660 5621160 complement(1951281..1952681) 1 NC_009848.1 lysine 2,3-aminomutase 1952681 kamA 5621160 kamA Bacillus pumilus SAFR-032 lysine 2,3-aminomutase YP_001487122.1 1951281 R 315750 CDS YP_001487123.1 157692661 5621161 complement(1952799..1954175) 1 NC_009848.1 transcriptional regulator 1954175 5621161 BPUM_1893 Bacillus pumilus SAFR-032 transcriptional regulator YP_001487123.1 1952799 R 315750 CDS YP_001487124.1 157692662 5621162 complement(1954334..1955629) 1 NC_009848.1 spore maturation protein CgeD 1955629 cgeD 5621162 cgeD Bacillus pumilus SAFR-032 spore maturation protein CgeD YP_001487124.1 1954334 R 315750 CDS YP_001487125.1 157692663 5621163 complement(1955647..1955967) 1 NC_009848.1 spore maturation protein CgeC 1955967 cgeC 5621163 cgeC Bacillus pumilus SAFR-032 spore maturation protein CgeC YP_001487125.1 1955647 R 315750 CDS YP_001487126.1 157692664 5621164 1956175..1956576 1 NC_009848.1 spore maturation protein CgeA 1956576 cgeA 5621164 cgeA Bacillus pumilus SAFR-032 spore maturation protein CgeA YP_001487126.1 1956175 D 315750 CDS YP_001487127.1 157692665 5621165 1956592..1957554 1 NC_009848.1 spore maturation protein CgeB 1957554 cgeB 5621165 cgeB Bacillus pumilus SAFR-032 spore maturation protein CgeB YP_001487127.1 1956592 D 315750 CDS YP_001487128.1 157692666 5621166 complement(1957589..1958305) 1 NC_009848.1 N-acylneuraminate cytidylyltransferase 1958305 neuA 5621166 neuA Bacillus pumilus SAFR-032 N-acylneuraminate cytidylyltransferase YP_001487128.1 1957589 R 315750 CDS YP_001487129.1 157692667 5621167 1958549..1959577 1 NC_009848.1 capsular polysaccharide biosynthesis protein D 1959577 capD 5621167 capD Bacillus pumilus SAFR-032 capsular polysaccharide biosynthesis protein D YP_001487129.1 1958549 D 315750 CDS YP_001487130.1 157692668 5621168 complement(1959628..1960059) 1 NC_009848.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1960059 msrB 5621168 msrB Bacillus pumilus SAFR-032 methionine sulfoxide reductase B YP_001487130.1 1959628 R 315750 CDS YP_001487131.1 157692669 5621169 complement(1960056..1960592) 1 NC_009848.1 this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A 1960592 msrA 5621169 msrA Bacillus pumilus SAFR-032 methionine sulfoxide reductase A YP_001487131.1 1960056 R 315750 CDS YP_001487132.1 157692670 5621170 1960730..1961161 1 NC_009848.1 MarR family transcriptional regulator 1961161 5621170 BPUM_1902 Bacillus pumilus SAFR-032 MarR family transcriptional regulator YP_001487132.1 1960730 D 315750 CDS YP_001487133.1 157692671 5621171 1961216..1961476 1 NC_009848.1 hypothetical protein 1961476 5621171 BPUM_1903 Bacillus pumilus SAFR-032 hypothetical protein YP_001487133.1 1961216 D 315750 CDS YP_001487134.1 157692672 5621172 1961597..1962262 1 NC_009848.1 hypothetical protein 1962262 5621172 BPUM_1904 Bacillus pumilus SAFR-032 hypothetical protein YP_001487134.1 1961597 D 315750 CDS YP_001487135.1 157692673 5621173 complement(1962295..1962492) 1 NC_009848.1 hypothetical protein 1962492 ypmT 5621173 ypmT Bacillus pumilus SAFR-032 hypothetical protein YP_001487135.1 1962295 R 315750 CDS YP_001487136.1 157692674 5621174 complement(1962515..1963081) 1 NC_009848.1 hypothetical protein 1963081 ypmS 5621174 ypmS Bacillus pumilus SAFR-032 hypothetical protein YP_001487136.1 1962515 R 315750 CDS YP_001487137.1 157692675 5621175 complement(1963091..1963852) 1 NC_009848.1 lipase 1963852 ypmR 5621175 ypmR Bacillus pumilus SAFR-032 lipase YP_001487137.1 1963091 R 315750 CDS YP_001487138.1 157692676 5621176 complement(1963922..1964512) 1 NC_009848.1 electron transport protein 1964512 ypmQ 5621176 ypmQ Bacillus pumilus SAFR-032 electron transport protein YP_001487138.1 1963922 R 315750 CDS YP_001487139.1 157692677 5621177 complement(1964537..1965379) 1 NC_009848.1 DegV family protein 1965379 5621177 BPUM_1909 Bacillus pumilus SAFR-032 DegV family protein YP_001487139.1 1964537 R 315750 CDS YP_001487140.1 157692678 5621178 complement(1965567..1965818) 1 NC_009848.1 hypothetical protein 1965818 ypmP 5621178 ypmP Bacillus pumilus SAFR-032 hypothetical protein YP_001487140.1 1965567 R 315750 CDS YP_001487141.1 157692679 5621179 complement(1965855..1967123) 1 NC_009848.1 catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic; threonine dehydratase 1967123 ilvA 5621179 ilvA Bacillus pumilus SAFR-032 threonine dehydratase YP_001487141.1 1965855 R 315750 CDS YP_001487142.1 157692680 5621180 1967305..1968273 1 NC_009848.1 sigma L dependent transcriptional regulator 1968273 yplP 5621180 yplP Bacillus pumilus SAFR-032 sigma L dependent transcriptional regulator YP_001487142.1 1967305 D 315750 CDS YP_001487143.1 157692681 5621181 1968288..1968926 1 NC_009848.1 hemolysin III 1968926 5621181 BPUM_1913 Bacillus pumilus SAFR-032 hemolysin III YP_001487143.1 1968288 D 315750 CDS YP_001487144.1 157692682 5621182 complement(1968961..1969584) 1 NC_009848.1 hypothetical protein 1969584 ypkP 5621182 ypkP Bacillus pumilus SAFR-032 hypothetical protein YP_001487144.1 1968961 R 315750 CDS YP_001487145.1 157692683 5621183 complement(1969604..1970089) 1 NC_009848.1 dihydrofolate reductase 1970089 dfrA 5621183 dfrA Bacillus pumilus SAFR-032 dihydrofolate reductase YP_001487145.1 1969604 R 315750 CDS YP_001487146.1 157692684 5621184 complement(1970086..1970880) 1 NC_009848.1 ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 1970880 thyA 5621184 thyA Bacillus pumilus SAFR-032 thymidylate synthase YP_001487146.1 1970086 R 315750 CDS YP_001487147.1 157692685 5621185 complement(1970984..1971523) 1 NC_009848.1 YpjQ; phosphatidylglycerophosphatase A 1971523 5621185 BPUM_1917 Bacillus pumilus SAFR-032 phosphatidylglycerophosphatase A YP_001487147.1 1970984 R 315750 CDS YP_001487148.1 157692686 5621186 complement(1971530..1972147) 1 NC_009848.1 hypothetical protein 1972147 ypjP 5621186 ypjP Bacillus pumilus SAFR-032 hypothetical protein YP_001487148.1 1971530 R 315750 CDS YP_001487149.1 157692687 5621187 1972301..1972375 1 NC_009848.1 hypothetical protein 1972375 5621187 BPUM_1919 Bacillus pumilus SAFR-032 hypothetical protein YP_001487149.1 1972301 D 315750 CDS YP_001487150.1 157692688 5621188 complement(1972579..1973367) 1 NC_009848.1 hypothetical protein 1973367 ypiP 5621188 ypiP Bacillus pumilus SAFR-032 hypothetical protein YP_001487150.1 1972579 R 315750 CDS YP_001487151.1 157692689 5621189 complement(1973434..1973868) 1 NC_009848.1 hypothetical protein 1973868 yphP 5621189 yphP Bacillus pumilus SAFR-032 hypothetical protein YP_001487151.1 1973434 R 315750 CDS YP_001487152.1 157692690 5621190 complement(1973950..1975626) 1 NC_009848.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1975626 ilvD 5621190 ilvD Bacillus pumilus SAFR-032 dihydroxy-acid dehydratase YP_001487152.1 1973950 R 315750 CDS YP_001487153.1 157692691 5621191 complement(1975934..1977070) 1 NC_009848.1 hypothetical protein 1977070 ypgR 5621191 ypgR Bacillus pumilus SAFR-032 hypothetical protein YP_001487153.1 1975934 R 315750 CDS YP_001487154.1 157692692 5621192 complement(1977101..1977712) 1 NC_009848.1 HD family metal dependent phosphohydrolase 1977712 ypgQ 5621192 ypgQ Bacillus pumilus SAFR-032 HD family metal dependent phosphohydrolase YP_001487154.1 1977101 R 315750 CDS YP_001487155.1 157692693 5621193 complement(1977726..1978208) 1 NC_009848.1 glutathione peroxidase 1978208 bsaA 5621193 bsaA Bacillus pumilus SAFR-032 glutathione peroxidase YP_001487155.1 1977726 R 315750 CDS YP_001487156.1 157692694 5621194 complement(1978283..1979965) 1 NC_009848.1 catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase 1979965 fhs 5621194 fhs Bacillus pumilus SAFR-032 formate--tetrahydrofolate ligase YP_001487156.1 1978283 R 315750 CDS YP_001487157.1 157692695 5621195 1980103..1981011 1 NC_009848.1 catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 1981011 metA 5621195 metA Bacillus pumilus SAFR-032 homoserine O-succinyltransferase YP_001487157.1 1980103 D 315750 CDS YP_001487158.1 157692696 5621196 1981240..1982391 1 NC_009848.1 processive; catalyzes the formation of mono-, di- and tri-glucosyldiacylglycerol by the progressive transfer of glucosyl residues to diacylglycerol; involved in the formation of membrane glycolipids; diacylglycerol glucosyltransferase 1982391 ugtP 5621196 ugtP Bacillus pumilus SAFR-032 diacylglycerol glucosyltransferase YP_001487158.1 1981240 D 315750 CDS YP_001487159.1 157692697 5621197 complement(1982425..1983126) 1 NC_009848.1 hypothetical protein 1983126 5621197 BPUM_1929 Bacillus pumilus SAFR-032 hypothetical protein YP_001487159.1 1982425 R 315750 CDS YP_001487160.1 157692698 5621198 1983385..1983585 1 NC_009848.1 cold shock protein 1983585 cspD 5621198 cspD Bacillus pumilus SAFR-032 cold shock protein YP_001487160.1 1983385 D 315750 CDS YP_001487161.1 157692699 5621199 complement(1983631..1983813) 1 NC_009848.1 regulatory protein DegR 1983813 degR 5621199 degR Bacillus pumilus SAFR-032 regulatory protein DegR YP_001487161.1 1983631 R 315750 CDS YP_001487162.1 157692700 5621200 complement(1983983..1984165) 1 NC_009848.1 hypothetical protein 1984165 ypeQ 5621200 ypeQ Bacillus pumilus SAFR-032 hypothetical protein YP_001487162.1 1983983 R 315750 CDS YP_001487163.1 157692701 5621201 complement(1984167..1984838) 1 NC_009848.1 hypothetical protein 1984838 ypeP 5621201 ypeP Bacillus pumilus SAFR-032 hypothetical protein YP_001487163.1 1984167 R 315750 CDS YP_001487164.1 157692702 5621202 1984933..1985622 1 NC_009848.1 hypothetical protein 1985622 ypdP 5621202 ypdP Bacillus pumilus SAFR-032 hypothetical protein YP_001487164.1 1984933 D 315750 CDS YP_001487165.1 157692703 5621203 1985624..1986019 1 NC_009848.1 ribonuclease H 1986019 rnhA 5621203 rnhA Bacillus pumilus SAFR-032 ribonuclease H YP_001487165.1 1985624 D 315750 CDS YP_001487166.1 157692704 5621204 1986064..1986189 1 NC_009848.1 small acid-soluble spore protein L 1986189 sspL 5621204 sspL Bacillus pumilus SAFR-032 small acid-soluble spore protein L YP_001487166.1 1986064 D 315750 CDS YP_001487167.1 157692705 5621205 complement(1986206..1987093) 1 NC_009848.1 5'-3' exonuclease 1987093 ypcP 5621205 ypcP Bacillus pumilus SAFR-032 5'-3' exonuclease YP_001487167.1 1986206 R 315750 CDS YP_001487168.1 157692706 5621206 complement(1987368..1987631) 1 NC_009848.1 hypothetical protein 1987631 ypbS 5621206 ypbS Bacillus pumilus SAFR-032 hypothetical protein YP_001487168.1 1987368 R 315750 CDS YP_001487169.1 157692707 5621207 complement(1987673..1991272) 1 NC_009848.1 YpbR; hypothetical protein 1991272 5621207 BPUM_1939 Bacillus pumilus SAFR-032 hypothetical protein YP_001487169.1 1987673 R 315750 CDS YP_001487170.1 157692708 5621208 complement(1991577..1992086) 1 NC_009848.1 isoprenylcysteine carboxyl methyltransferase 1992086 ypbQ 5621208 ypbQ Bacillus pumilus SAFR-032 isoprenylcysteine carboxyl methyltransferase YP_001487170.1 1991577 R 315750 CDS YP_001487171.1 157692709 5621209 complement(1992083..1993183) 1 NC_009848.1 naringenin-chalcone synthase 1993183 bcsA 5621209 bcsA Bacillus pumilus SAFR-032 naringenin-chalcone synthase YP_001487171.1 1992083 R 315750 CDS YP_001487172.1 157692710 5621210 1993753..1994556 1 NC_009848.1 polysaccharide deacetylase 1994556 yheN2 5621210 yheN2 Bacillus pumilus SAFR-032 polysaccharide deacetylase YP_001487172.1 1993753 D 315750 CDS YP_001487173.1 157692711 5621211 complement(1994748..1996067) 1 NC_009848.1 xanthine permease; NCS2 family uracil:xanthine symporter-2 1996067 pbuX 5621211 pbuX Bacillus pumilus SAFR-032 NCS2 family uracil:xanthine symporter-2 YP_001487173.1 1994748 R 315750 CDS YP_001487174.1 157692712 5621212 complement(1996064..1996648) 1 NC_009848.1 xanthine phosphoribosyltransferase 1996648 xpt 5621212 xpt Bacillus pumilus SAFR-032 xanthine phosphoribosyltransferase YP_001487174.1 1996064 R 315750 CDS YP_001487175.1 157692713 5621213 complement(1997002..1998507) 1 NC_009848.1 carboxypeptidase Taq; M32 family carboxypeptidase 1998507 ypwA 5621213 ypwA Bacillus pumilus SAFR-032 M32 family carboxypeptidase YP_001487175.1 1997002 R 315750 CDS YP_001487176.1 157692714 5621214 complement(1998635..2000572) 1 NC_009848.1 ATP-dependent helicase 2000572 ypvA 5621214 ypvA Bacillus pumilus SAFR-032 ATP-dependent helicase YP_001487176.1 1998635 R 315750 CDS YP_001487177.1 157692715 5621215 2000634..2000846 1 NC_009848.1 hypothetical protein 2000846 5621215 BPUM_1947 Bacillus pumilus SAFR-032 hypothetical protein YP_001487177.1 2000634 D 315750 CDS YP_001487178.1 157692716 5621216 complement(2000974..2001774) 1 NC_009848.1 integrase 2001774 5621216 BPUM_1948 Bacillus pumilus SAFR-032 integrase YP_001487178.1 2000974 R 315750 CDS YP_001487179.1 157692717 5621217 complement(2001792..2002124) 1 NC_009848.1 transposase 2002124 5621217 BPUM_1949 Bacillus pumilus SAFR-032 transposase YP_001487179.1 2001792 R 315750 CDS YP_001487180.1 157692718 5621218 complement(2002240..2003394) 1 NC_009848.1 YpsC; site-specific DNA-methyltransferase (adenine-specific) 2003394 5621218 BPUM_1950 Bacillus pumilus SAFR-032 site-specific DNA-methyltransferase (adenine-specific) YP_001487180.1 2002240 R 315750 CDS YP_001487181.1 157692719 5621220 complement(2003949..2004254) 1 NC_009848.1 GpsB; guiding PBP1 shuttling; similar to DivIVA; cell division protein GpsB 2004254 ypsB 5621220 ypsB Bacillus pumilus SAFR-032 cell division protein GpsB YP_001487181.1 2003949 R 315750 CDS YP_001487182.1 157692720 5621221 complement(2004312..2004944) 1 NC_009848.1 hypothetical protein 2004944 ypsA 5621221 ypsA Bacillus pumilus SAFR-032 hypothetical protein YP_001487182.1 2004312 R 315750 CDS YP_001487183.1 157692721 5621222 complement(2005474..2006721) 1 NC_009848.1 possible exonuclease; hypothetical protein 2006721 yprB 5621222 yprB Bacillus pumilus SAFR-032 hypothetical protein YP_001487183.1 2005474 R 315750 CDS YP_001487184.1 157692722 5621223 complement(2006745..2008991) 1 NC_009848.1 ATP-dependent helicase 2008991 yprA 5621223 yprA Bacillus pumilus SAFR-032 ATP-dependent helicase YP_001487184.1 2006745 R 315750 CDS YP_001487185.1 157692723 5621224 2009236..2010270 1 NC_009848.1 FMN reductase 2010270 yqiG 5621224 yqiG Bacillus pumilus SAFR-032 FMN reductase YP_001487185.1 2009236 D 315750 CDS YP_001487186.1 157692724 5621225 complement(2010319..2010825) 1 NC_009848.1 PTS family glucose/sucrose porter component IIA 2010825 ypqE 5621225 ypqE Bacillus pumilus SAFR-032 PTS family glucose/sucrose porter component IIA YP_001487186.1 2010319 R 315750 CDS YP_001487187.1 157692725 5621226 2010994..2011413 1 NC_009848.1 hypothetical protein 2011413 5621226 BPUM_1957 Bacillus pumilus SAFR-032 hypothetical protein YP_001487187.1 2010994 D 315750 CDS YP_001487188.1 157692726 5621227 complement(2011434..2011886) 1 NC_009848.1 hypothetical protein 2011886 yppG 5621227 yppG Bacillus pumilus SAFR-032 hypothetical protein YP_001487188.1 2011434 R 315750 CDS YP_001487189.1 157692727 5621228 complement(2011993..2012364) 1 NC_009848.1 hypothetical protein 2012364 yppE 5621228 yppE Bacillus pumilus SAFR-032 hypothetical protein YP_001487189.1 2011993 R 315750 CDS YP_001487190.1 157692728 5621229 2012436..2012756 1 NC_009848.1 hypothetical protein 2012756 5621229 BPUM_1960 Bacillus pumilus SAFR-032 hypothetical protein YP_001487190.1 2012436 D 315750 CDS YP_001487191.1 157692729 5621230 2012852..2012956 1 NC_009848.1 small acid-soluble spore protein M 2012956 sspM 5621230 sspM Bacillus pumilus SAFR-032 small acid-soluble spore protein M YP_001487191.1 2012852 D 315750 CDS YP_001487192.1 157692730 5621231 complement(2012979..2013935) 1 NC_009848.1 hypothetical protein 2013935 yppC 5621231 yppC Bacillus pumilus SAFR-032 hypothetical protein YP_001487192.1 2012979 R 315750 CDS YP_001487193.1 157692731 5621232 2013982..2014599 1 NC_009848.1 functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 2014599 recU 5621232 recU Bacillus pumilus SAFR-032 Holliday junction-specific endonuclease YP_001487193.1 2013982 D 315750 CDS YP_001487194.1 157692732 5621233 2014637..2017348 1 NC_009848.1 penicillin-binding proteins 1A and 1B 2017348 ponA 5621233 ponA Bacillus pumilus SAFR-032 penicillin-binding proteins 1A and 1B YP_001487194.1 2014637 D 315750 CDS YP_001487195.1 157692733 5621234 complement(2017383..2017892) 1 NC_009848.1 hypothetical protein 2017892 ypoC 5621234 ypoC Bacillus pumilus SAFR-032 hypothetical protein YP_001487195.1 2017383 R 315750 CDS YP_001487196.1 157692734 5621235 complement(2017889..2018551) 1 NC_009848.1 DNA-(apurinic or apyrimidinic site) lyase 2018551 nth 5621235 nth Bacillus pumilus SAFR-032 DNA-(apurinic or apyrimidinic site) lyase YP_001487196.1 2017889 R 315750 CDS YP_001487197.1 157692735 5621236 complement(2018569..2019273) 1 NC_009848.1 DNA replication protein DnaD 2019273 dnaD 5621236 dnaD Bacillus pumilus SAFR-032 DNA replication protein DnaD YP_001487197.1 2018569 R 315750 CDS YP_001487198.1 157692736 5621237 complement(2019371..2020729) 1 NC_009848.1 catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 2020729 asnC 5621237 asnC Bacillus pumilus SAFR-032 asparaginyl-tRNA synthetase YP_001487198.1 2019371 R 315750 CDS YP_001487199.1 157692737 5621238 complement(2020779..2021264) 1 NC_009848.1 hypothetical protein 2021264 ypmB 5621238 ypmB Bacillus pumilus SAFR-032 hypothetical protein YP_001487199.1 2020779 R 315750 CDS YP_001487200.1 157692738 5621239 complement(2021277..2021447) 1 NC_009848.1 hypothetical protein 2021447 ypmA 5621239 ypmA Bacillus pumilus SAFR-032 hypothetical protein YP_001487200.1 2021277 R 315750 CDS YP_001487201.1 157692739 5621240 complement(2021580..2024372) 1 NC_009848.1 unwinds DNA; bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon 2024372 dinG 5621240 dinG Bacillus pumilus SAFR-032 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon YP_001487201.1 2021580 R 315750 CDS YP_001487202.1 157692740 5621241 complement(2024486..2024869) 1 NC_009848.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 2024869 panD 5621241 panD Bacillus pumilus SAFR-032 aspartate alpha-decarboxylase YP_001487202.1 2024486 R 315750 CDS YP_001487203.1 157692741 5621242 complement(2024862..2025728) 1 NC_009848.1 pantoate--beta-alanine ligase 2025728 panC 5621242 panC Bacillus pumilus SAFR-032 pantoate--beta-alanine ligase YP_001487203.1 2024862 R 315750 CDS YP_001487204.1 157692742 5621243 complement(2025725..2026564) 1 NC_009848.1 catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2026564 panB 5621243 panB Bacillus pumilus SAFR-032 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_001487204.1 2025725 R 315750 CDS YP_001487205.1 157692743 5621244 complement(2026762..2027745) 1 NC_009848.1 bifunctional biotin repressor/biotin--[acetyl-CoA-carboxylase] ligase; bifunctional transcriptional regulator/biotin--[acetyl-CoA-carboxylase] ligase 2027745 birA 5621244 birA Bacillus pumilus SAFR-032 bifunctional transcriptional regulator/biotin--[acetyl-CoA-carboxylase] ligase YP_001487205.1 2026762 R 315750 CDS YP_001487206.1 157692744 5621245 complement(2027718..2028920) 1 NC_009848.1 catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase 2028920 cca 5621245 cca Bacillus pumilus SAFR-032 tRNA CCA-pyrophosphorylase YP_001487206.1 2027718 R 315750 CDS YP_001487207.1 157692745 5621246 complement(2028913..2030058) 1 NC_009848.1 YpjH; glycosyltransferase 2030058 5621246 BPUM_1977 Bacillus pumilus SAFR-032 glycosyltransferase YP_001487207.1 2028913 R 315750 CDS YP_001487208.1 157692746 5621247 complement(2030061..2030765) 1 NC_009848.1 hypothetical protein 2030765 ypjG 5621247 ypjG Bacillus pumilus SAFR-032 hypothetical protein YP_001487208.1 2030061 R 315750 CDS YP_001487209.1 157692747 5621248 complement(2030752..2031171) 1 NC_009848.1 methylglyoxal synthase 2031171 mgsA 5621248 mgsA Bacillus pumilus SAFR-032 methylglyoxal synthase YP_001487209.1 2030752 R 315750 CDS YP_001487210.1 157692748 5621249 complement(2031189..2031992) 1 NC_009848.1 catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 2031992 dapB 5621249 dapB Bacillus pumilus SAFR-032 dihydrodipicolinate reductase YP_001487210.1 2031189 R 315750 CDS YP_001487211.1 157692749 5621250 complement(2031998..2032333) 1 NC_009848.1 pyrophosphatase 2032333 ypjD 5621250 ypjD Bacillus pumilus SAFR-032 pyrophosphatase YP_001487211.1 2031998 R 315750 CDS YP_001487212.1 157692750 5621251 2032471..2033343 1 NC_009848.1 hypothetical protein 2033343 ypjC 5621251 ypjC Bacillus pumilus SAFR-032 hypothetical protein YP_001487212.1 2032471 D 315750 CDS YP_001487213.1 157692751 5621252 complement(2033374..2034177) 1 NC_009848.1 sporulation protein YpjB 2034177 ypjB 5621252 ypjB Bacillus pumilus SAFR-032 sporulation protein YpjB YP_001487213.1 2033374 R 315750 CDS YP_001487214.1 157692752 5621253 complement(2034243..2034800) 1 NC_009848.1 hypothetical protein 2034800 ypjA 5621253 ypjA Bacillus pumilus SAFR-032 hypothetical protein YP_001487214.1 2034243 R 315750 CDS YP_001487215.1 157692753 5621254 complement(2034938..2035705) 1 NC_009848.1 menaquinol:cytochrome c dehydrogenase cytochrome b/c subunit 2035705 qcrC 5621254 qcrC Bacillus pumilus SAFR-032 menaquinol:cytochrome c dehydrogenase cytochrome b/c subunit YP_001487215.1 2034938 R 315750 CDS YP_001487216.1 157692754 5621255 complement(2035748..2036422) 1 NC_009848.1 electron transport protein; cytochrome b6 2036422 qcrB 5621255 qcrB Bacillus pumilus SAFR-032 cytochrome b6 YP_001487216.1 2035748 R 315750 CDS YP_001487217.1 157692755 5621256 complement(2036425..2036931) 1 NC_009848.1 menaquinol:cytochrome c dehydrogenase iron-sulfur subunit 2036931 qcrA 5621256 qcrA Bacillus pumilus SAFR-032 menaquinol:cytochrome c dehydrogenase iron-sulfur subunit YP_001487217.1 2036425 R 315750 CDS YP_001487218.1 157692756 5621257 complement(2037076..2037522) 1 NC_009848.1 hypothetical protein 2037522 ypiF 5621257 ypiF Bacillus pumilus SAFR-032 hypothetical protein YP_001487218.1 2037076 R 315750 CDS YP_001487219.1 157692757 5621258 complement(2037584..2038123) 1 NC_009848.1 hypothetical protein 2038123 ypiB 5621258 ypiB Bacillus pumilus SAFR-032 hypothetical protein YP_001487219.1 2037584 R 315750 CDS YP_001487220.1 157692758 5621259 complement(2038199..2039497) 1 NC_009848.1 hypothetical protein 2039497 ypiA 5621259 ypiA Bacillus pumilus SAFR-032 hypothetical protein YP_001487220.1 2038199 R 315750 CDS YP_001487221.1 157692759 5621260 complement(2039762..2041048) 1 NC_009848.1 catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 2041048 aroE 5621260 aroE Bacillus pumilus SAFR-032 3-phosphoshikimate 1-carboxyvinyltransferase YP_001487221.1 2039762 R 315750 CDS YP_001487222.1 157692760 5621261 complement(2041059..2042213) 1 NC_009848.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase 2042213 tyrA 5621261 tyrA Bacillus pumilus SAFR-032 prephenate dehydrogenase YP_001487222.1 2041059 R 315750 CDS YP_001487223.1 157692761 5621262 complement(2042288..2043385) 1 NC_009848.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 2043385 hisC 5621262 hisC Bacillus pumilus SAFR-032 histidinol-phosphate aminotransferase YP_001487223.1 2042288 R 315750 CDS YP_001487224.1 157692762 5621263 complement(2043396..2044199) 1 NC_009848.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 2044199 trpA 5621263 trpA Bacillus pumilus SAFR-032 tryptophan synthase subunit alpha YP_001487224.1 2043396 R 315750 CDS YP_001487225.1 157692763 5621264 complement(2044196..2045395) 1 NC_009848.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 2045395 trpB 5621264 trpB Bacillus pumilus SAFR-032 tryptophan synthase subunit beta YP_001487225.1 2044196 R 315750 CDS YP_001487226.1 157692764 5621265 complement(2045376..2046035) 1 NC_009848.1 catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 2046035 trpF 5621265 trpF Bacillus pumilus SAFR-032 N-(5'-phosphoribosyl)anthranilate isomerase YP_001487226.1 2045376 R 315750 CDS YP_001487227.1 157692765 5621266 complement(2046041..2046793) 1 NC_009848.1 involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; Indole-3-glycerol phosphate synthase 2046793 trpC 5621266 trpC Bacillus pumilus SAFR-032 Indole-3-glycerol phosphate synthase YP_001487227.1 2046041 R 315750 CDS YP_001487228.1 157692766 5621267 complement(2046786..2047808) 1 NC_009848.1 Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 2047808 trpD 5621267 trpD Bacillus pumilus SAFR-032 anthranilate phosphoribosyltransferase YP_001487228.1 2046786 R 315750 CDS YP_001487229.1 157692767 5621268 complement(2047780..2049327) 1 NC_009848.1 with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 2049327 trpE 5621268 trpE Bacillus pumilus SAFR-032 anthranilate synthase component I YP_001487229.1 2047780 R 315750 CDS YP_001487230.1 157692768 5621269 complement(2049560..2049943) 1 NC_009848.1 chorismate mutase 2049943 aroH 5621269 aroH Bacillus pumilus SAFR-032 chorismate mutase YP_001487230.1 2049560 R 315750 CDS YP_001487231.1 157692769 5621270 complement(2049940..2051031) 1 NC_009848.1 catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 2051031 aroB 5621270 aroB Bacillus pumilus SAFR-032 3-dehydroquinate synthase YP_001487231.1 2049940 R 315750 CDS YP_001487232.1 157692770 5621271 complement(2051031..2052203) 1 NC_009848.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 2052203 aroF 5621271 aroF Bacillus pumilus SAFR-032 chorismate synthase YP_001487232.1 2051031 R 315750 CDS YP_001487233.1 157692771 5621272 complement(2052277..2053056) 1 NC_009848.1 protein-glutamate O-methyltransferase 2053056 cheR 5621272 cheR Bacillus pumilus SAFR-032 protein-glutamate O-methyltransferase YP_001487233.1 2052277 R 315750 CDS YP_001487234.1 157692772 5621273 complement(2053201..2053647) 1 NC_009848.1 nucleoside diphosphate kinase 2053647 ndk 5621273 ndk Bacillus pumilus SAFR-032 nucleoside diphosphate kinase YP_001487234.1 2053201 R 315750 CDS YP_001487235.1 157692773 5621274 complement(2053778..2054740) 1 NC_009848.1 heptaprenyl diphosphate synthase component II 2054740 hepT 5621274 hepT Bacillus pumilus SAFR-032 heptaprenyl diphosphate synthase component II YP_001487235.1 2053778 R 315750 CDS YP_001487236.1 157692774 5621275 complement(2054765..2055469) 1 NC_009848.1 Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase 2055469 ubiE 5621275 ubiE Bacillus pumilus SAFR-032 ubiquinone/menaquinone biosynthesis methyltransferase YP_001487236.1 2054765 R 315750 CDS YP_001487237.1 157692775 5621276 complement(2055473..2056240) 1 NC_009848.1 GerCA, HepA; trans-hexaprenyltranstransferase subunit 1 2056240 hepS 5621276 hepS Bacillus pumilus SAFR-032 trans-hexaprenyltranstransferase subunit 1 YP_001487237.1 2055473 R 315750 CDS YP_001487238.1 157692776 5621277 complement(2056355..2056555) 1 NC_009848.1 tryptophan RNA-binding attenuator protein; binds leader Trp transcript causing transcription termination; transcription attenuation protein MtrB 2056555 mtrB 5621277 mtrB Bacillus pumilus SAFR-032 transcription attenuation protein MtrB YP_001487238.1 2056355 R 315750 CDS YP_001487239.1 157692777 5621278 complement(2056610..2057179) 1 NC_009848.1 involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 2057179 folE 5621278 folE Bacillus pumilus SAFR-032 GTP cyclohydrolase I YP_001487239.1 2056610 R 315750 CDS YP_001487240.1 157692778 5621279 complement(2057370..2057648) 1 NC_009848.1 signal recognition particle-like (SRP) component DbpA HupA HbsU; non-specific DNA-binding protein HBsu 2057648 hbs 5621279 hbs Bacillus pumilus SAFR-032 non-specific DNA-binding protein HBsu YP_001487240.1 2057370 R 315750 CDS YP_001487241.1 157692779 5621280 complement(2058023..2059501) 1 NC_009848.1 stage IV sporulation protein A SpoVP; spore cortex-coat assembly protein 2059501 spoIVA 5621280 spoIVA Bacillus pumilus SAFR-032 spore cortex-coat assembly protein YP_001487241.1 2058023 R 315750 CDS YP_001487242.1 157692780 5621281 complement(2059706..2060431) 1 NC_009848.1 JohF; hypothetical protein 2060431 yphF 5621281 yphF Bacillus pumilus SAFR-032 hypothetical protein YP_001487242.1 2059706 R 315750 CDS YP_001487243.1 157692781 5621282 complement(2060449..2060652) 1 NC_009848.1 hypothetical protein 2060652 yphE 5621282 yphE Bacillus pumilus SAFR-032 hypothetical protein YP_001487243.1 2060449 R 315750 CDS YP_001487244.1 157692782 5621283 complement(2060918..2061955) 1 NC_009848.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 2061955 gpsA 5621283 gpsA Bacillus pumilus SAFR-032 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_001487244.1 2060918 R 315750 CDS YP_001487245.1 157692783 5621284 complement(2061970..2063280) 1 NC_009848.1 EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 2063280 engA 5621284 engA Bacillus pumilus SAFR-032 GTP-binding protein EngA YP_001487245.1 2061970 R 315750 CDS YP_001487246.1 157692784 5621285 complement(2063440..2063634) 1 NC_009848.1 hypothetical protein 2063634 5621285 BPUM_2016 Bacillus pumilus SAFR-032 hypothetical protein YP_001487246.1 2063440 R 315750 CDS YP_001487247.1 157692785 5621286 complement(2063641..2064525) 1 NC_009848.1 YphB; spore envelope protein 2064525 seaA 5621286 seaA Bacillus pumilus SAFR-032 spore envelope protein YP_001487247.1 2063641 R 315750 CDS YP_001487248.1 157692786 5621287 complement(2064522..2065124) 1 NC_009848.1 hypothetical protein 2065124 yphA 5621287 yphA Bacillus pumilus SAFR-032 hypothetical protein YP_001487248.1 2064522 R 315750 CDS YP_001487249.1 157692787 5621288 2065197..2065376 1 NC_009848.1 hypothetical protein 2065376 5621288 BPUM_2019 Bacillus pumilus SAFR-032 hypothetical protein YP_001487249.1 2065197 D 315750 CDS YP_001487250.1 157692788 5621289 complement(2065428..2066495) 1 NC_009848.1 catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase 2066495 fni 5621289 fni Bacillus pumilus SAFR-032 isopentenyl pyrophosphate isomerase YP_001487250.1 2065428 R 315750 CDS YP_001487251.1 157692789 5621290 complement(2066510..2067661) 1 NC_009848.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 2067661 rpsA 5621290 rpsA Bacillus pumilus SAFR-032 30S ribosomal protein S1 YP_001487251.1 2066510 R 315750 CDS YP_001487252.1 157692790 5621291 complement(2067885..2068562) 1 NC_009848.1 Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 2068562 cmk 5621291 cmk Bacillus pumilus SAFR-032 cytidylate kinase YP_001487252.1 2067885 R 315750 CDS YP_001487253.1 157692791 5621292 complement(2068634..2068816) 1 NC_009848.1 JofB; hypothetical protein 2068816 ypfB 5621292 ypfB Bacillus pumilus SAFR-032 hypothetical protein YP_001487253.1 2068634 R 315750 CDS YP_001487254.1 157692792 5621293 complement(2068880..2069527) 1 NC_009848.1 possible glycosyltransferase JofA; hypothetical protein 2069527 ypfA 5621293 ypfA Bacillus pumilus SAFR-032 hypothetical protein YP_001487254.1 2068880 R 315750 CDS YP_001487255.1 157692793 5621294 complement(2069629..2070978) 1 NC_009848.1 JoeB YzuA; hypothetical protein 2070978 ypeB 5621294 ypeB Bacillus pumilus SAFR-032 hypothetical protein YP_001487255.1 2069629 R 315750 CDS YP_001487256.1 157692794 5621295 complement(2070995..2071906) 1 NC_009848.1 YpeA; spore cortex-lytic protein 2071906 sleB 5621295 sleB Bacillus pumilus SAFR-032 spore cortex-lytic protein YP_001487256.1 2070995 R 315750 CDS YP_001487257.1 157692795 5621296 complement(2072035..2072691) 1 NC_009848.1 hypothetical protein 2072691 ypdC 5621296 ypdC Bacillus pumilus SAFR-032 hypothetical protein YP_001487257.1 2072035 R 315750 CDS YP_001487258.1 157692796 5621297 complement(2072846..2073817) 1 NC_009848.1 possible FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase 2073817 ypdA 5621297 ypdA Bacillus pumilus SAFR-032 thioredoxin reductase YP_001487258.1 2072846 R 315750 CDS YP_001487259.1 157692797 5621298 complement(2073940..2075214) 1 NC_009848.1 NAD-specific glutamate dehydrogenase YpcA; glutamate dehydrogenase 2075214 gudB 5621298 gudB Bacillus pumilus SAFR-032 glutamate dehydrogenase YP_001487259.1 2073940 R 315750 CDS YP_001487260.1 157692798 5621299 complement(2075409..2075990) 1 NC_009848.1 enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein 2075990 ypbH 5621299 ypbH Bacillus pumilus SAFR-032 adaptor protein YP_001487260.1 2075409 R 315750 CDS YP_001487261.1 157692799 5621300 complement(2076156..2076944) 1 NC_009848.1 metallophosphoesterase 2076944 ypbG 5621300 ypbG Bacillus pumilus SAFR-032 metallophosphoesterase YP_001487261.1 2076156 R 315750 CDS YP_001487262.1 157692800 5621301 complement(2077093..2077485) 1 NC_009848.1 hypothetical protein 2077485 ypbF 5621301 ypbF Bacillus pumilus SAFR-032 hypothetical protein YP_001487262.1 2077093 R 315750 CDS YP_001487263.1 157692801 5621302 complement(2077550..2078311) 1 NC_009848.1 possible LysM family protein; hypothetical protein 2078311 ypbE 5621302 ypbE Bacillus pumilus SAFR-032 hypothetical protein YP_001487263.1 2077550 R 315750 CDS YP_001487264.1 157692802 5621303 complement(2078256..2078897) 1 NC_009848.1 possible prenyl protease; hypothetical protein 2078897 ypbD 5621303 ypbD Bacillus pumilus SAFR-032 hypothetical protein YP_001487264.1 2078256 R 315750 CDS YP_001487265.1 157692803 5621304 complement(2078894..2080402) 1 NC_009848.1 RecS, YpbC; ATP-dependent helicase RecQ 2080402 recQ 5621304 recQ Bacillus pumilus SAFR-032 ATP-dependent helicase RecQ YP_001487265.1 2078894 R 315750 CDS YP_001487266.1 157692804 5621305 complement(2080395..2081447) 1 NC_009848.1 hypothetical protein 2081447 ypbB 5621305 ypbB Bacillus pumilus SAFR-032 hypothetical protein YP_001487266.1 2080395 R 315750 CDS YP_001487267.1 157692805 5621306 2081715..2081963 1 NC_009848.1 ferredoxin 2081963 fer 5621306 fer Bacillus pumilus SAFR-032 ferredoxin YP_001487267.1 2081715 D 315750 CDS YP_001487268.1 157692806 5621307 complement(2081998..2082579) 1 NC_009848.1 hypothetical protein 2082579 ypaA 5621307 ypaA Bacillus pumilus SAFR-032 hypothetical protein YP_001487268.1 2081998 R 315750 CDS YP_001487269.1 157692807 5621308 2083143..2084717 1 NC_009848.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 2084717 serA 5621308 serA Bacillus pumilus SAFR-032 D-3-phosphoglycerate dehydrogenase YP_001487269.1 2083143 D 315750 CDS YP_001487270.1 157692808 5621309 complement(2084752..2085396) 1 NC_009848.1 M23 family peptidase 2085396 5621309 BPUM_2040 Bacillus pumilus SAFR-032 M23 family peptidase YP_001487270.1 2084752 R 315750 CDS YP_001487271.1 157692809 5621310 complement(2085497..2086540) 1 NC_009848.1 sigma X negative regulator 2086540 rsiX 5621310 rsiX Bacillus pumilus SAFR-032 sigma X negative regulator YP_001487271.1 2085497 R 315750 CDS YP_001487272.1 157692810 5621311 complement(2086518..2087126) 1 NC_009848.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in B. subtilis has been shown to regulate cell envelope modification and may effect antibiotic resistance; RNA polymerase sigma factor SigX 2087126 sigX 5621311 sigX Bacillus pumilus SAFR-032 RNA polymerase sigma factor SigX YP_001487272.1 2086518 R 315750 CDS YP_001487273.1 157692811 5621312 complement(2087237..2087446) 1 NC_009848.1 hypothetical protein 2087446 5621312 BPUM_2043 Bacillus pumilus SAFR-032 hypothetical protein YP_001487273.1 2087237 R 315750 CDS YP_001487274.1 157692812 5621313 complement(2087532..2089313) 1 NC_009848.1 sensor histidine kinase 2089313 resE 5621313 resE Bacillus pumilus SAFR-032 sensor histidine kinase YP_001487274.1 2087532 R 315750 CDS YP_001487275.1 157692813 5621314 complement(2089310..2090032) 1 NC_009848.1 response regulator 2090032 resD 5621314 resD Bacillus pumilus SAFR-032 response regulator YP_001487275.1 2089310 R 315750 CDS YP_001487276.1 157692814 5621315 complement(2090120..2091298) 1 NC_009848.1 cytochrome c biogenesis protein ResC 2091298 resC 5621315 resC Bacillus pumilus SAFR-032 cytochrome c biogenesis protein ResC YP_001487276.1 2090120 R 315750 CDS YP_001487277.1 157692815 5621316 complement(2091282..2092961) 1 NC_009848.1 cytochrome c biogenesis protein ResB 2092961 resB 5621316 resB Bacillus pumilus SAFR-032 cytochrome c biogenesis protein ResB YP_001487277.1 2091282 R 315750 CDS YP_001487278.1 157692816 5621317 complement(2092963..2093493) 1 NC_009848.1 catalyzes the reduction of the disulfide bonds in the heme binding site of apocytochrome c; thiol-disulfide oxidoreductase 2093493 resA 5621317 resA Bacillus pumilus SAFR-032 thiol-disulfide oxidoreductase YP_001487278.1 2092963 R 315750 CDS YP_001487279.1 157692817 5621318 complement(2093584..2094429) 1 NC_009848.1 pseudouridylate synthase 2094429 rluB 5621318 rluB Bacillus pumilus SAFR-032 pseudouridylate synthase YP_001487279.1 2093584 R 315750 CDS YP_001487280.1 157692818 5621319 complement(2094456..2094992) 1 NC_009848.1 spore maturation protein B 2094992 spmB 5621319 spmB Bacillus pumilus SAFR-032 spore maturation protein B YP_001487280.1 2094456 R 315750 CDS YP_001487281.1 157692819 5621320 complement(2094997..2095584) 1 NC_009848.1 spore maturation protein A 2095584 spmA 5621320 spmA Bacillus pumilus SAFR-032 spore maturation protein A YP_001487281.1 2094997 R 315750 CDS YP_001487282.1 157692820 5621321 complement(2095572..2096729) 1 NC_009848.1 serine-type D-Ala-D-Ala carboxypeptidase 2096729 dacB 5621321 dacB Bacillus pumilus SAFR-032 serine-type D-Ala-D-Ala carboxypeptidase YP_001487282.1 2095572 R 315750 CDS YP_001487283.1 157692821 5621322 complement(2096835..2097314) 1 NC_009848.1 hypothetical protein 2097314 ypuI 5621322 ypuI Bacillus pumilus SAFR-032 hypothetical protein YP_001487283.1 2096835 R 315750 CDS YP_001487284.1 157692822 5621323 complement(2097428..2098021) 1 NC_009848.1 segregation and condensation protein B 2098021 scpB 5621323 scpB Bacillus pumilus SAFR-032 segregation and condensation protein B YP_001487284.1 2097428 R 315750 CDS YP_001487285.1 157692823 5621324 complement(2098011..2098769) 1 NC_009848.1 functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB; segregation and condensation protein A 2098769 scpA 5621324 scpA Bacillus pumilus SAFR-032 segregation and condensation protein A YP_001487285.1 2098011 R 315750 CDS YP_001487286.1 157692824 5621325 2098978..2099070 1 NC_009848.1 hypothetical protein 2099070 5621325 BPUM_2056 Bacillus pumilus SAFR-032 hypothetical protein YP_001487286.1 2098978 D 315750 CDS YP_001487287.1 157692825 5621326 2099158..2099682 1 NC_009848.1 hypothetical protein 2099682 ypuF 5621326 ypuF Bacillus pumilus SAFR-032 hypothetical protein YP_001487287.1 2099158 D 315750 CDS YP_001487288.1 157692826 5621327 complement(2099707..2100060) 1 NC_009848.1 reductase 2100060 ribT 5621327 ribT Bacillus pumilus SAFR-032 reductase YP_001487288.1 2099707 R 315750 CDS YP_001487289.1 157692827 5621328 complement(2100174..2100638) 1 NC_009848.1 RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 2100638 ribH 5621328 ribH Bacillus pumilus SAFR-032 6,7-dimethyl-8-ribityllumazine synthase YP_001487289.1 2100174 R 315750 CDS YP_001487290.1 157692828 5621329 complement(2100666..2101292) 1 NC_009848.1 bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase 2101292 ribA 5621329 ribA Bacillus pumilus SAFR-032 bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase YP_001487290.1 2100666 R 315750 CDS YP_001487291.1 157692829 5621330 complement(2101304..2101954) 1 NC_009848.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2101954 ribE 5621330 ribE Bacillus pumilus SAFR-032 riboflavin synthase subunit alpha YP_001487291.1 2101304 R 315750 CDS YP_001487292.1 157692830 5621331 complement(2102455..2102799) 1 NC_009848.1 lipoprotein 2102799 ypuD 5621331 ypuD Bacillus pumilus SAFR-032 lipoprotein YP_001487292.1 2102455 R 315750 CDS YP_001487293.1 157692831 5621332 complement(2103024..2103257) 1 NC_009848.1 hypothetical protein 2103257 5621332 BPUM_2063 Bacillus pumilus SAFR-032 hypothetical protein YP_001487293.1 2103024 R 315750 CDS YP_001487294.1 157692832 5621333 complement(2103470..2104051) 1 NC_009848.1 AcrR; TetR family transcriptional regulator 2104051 yezE 5621333 yezE Bacillus pumilus SAFR-032 TetR family transcriptional regulator YP_001487294.1 2103470 R 315750 CDS YP_001487295.1 157692833 5621334 2104292..2105551 1 NC_009848.1 major facilitator superfamily transporter 2105551 5621334 BPUM_2065 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001487295.1 2104292 D 315750 CDS YP_001487296.1 157692834 5621335 complement(2105596..2106033) 1 NC_009848.1 peptidyl-prolyl isomerase 2106033 ppiB 5621335 ppiB Bacillus pumilus SAFR-032 peptidyl-prolyl isomerase YP_001487296.1 2105596 R 315750 CDS YP_001487297.1 157692835 5621336 2106339..2107238 1 NC_009848.1 hypothetical protein 2107238 ypuA 5621336 ypuA Bacillus pumilus SAFR-032 hypothetical protein YP_001487297.1 2106339 D 315750 CDS YP_001487298.1 157692836 5621337 complement(2107278..2108609) 1 NC_009848.1 diaminopimelate decarboxylase 2108609 lysA 5621337 lysA Bacillus pumilus SAFR-032 diaminopimelate decarboxylase YP_001487298.1 2107278 R 315750 CDS YP_001487299.1 157692837 5621338 complement(2108719..2110191) 1 NC_009848.1 stage V sporulation protein AF 2110191 spoVAF 5621338 spoVAF Bacillus pumilus SAFR-032 stage V sporulation protein AF YP_001487299.1 2108719 R 315750 CDS YP_001487300.1 157692838 5621339 complement(2110145..2110753) 1 NC_009848.1 stage V sporulation protein AEA 2110753 spoVAEA 5621339 spoVAEA Bacillus pumilus SAFR-032 stage V sporulation protein AEA YP_001487300.1 2110145 R 315750 CDS YP_001487301.1 157692839 5621340 complement(2110760..2111110) 1 NC_009848.1 stage V sporulation protein AEB 2111110 spoVAEB 5621340 spoVAEB Bacillus pumilus SAFR-032 stage V sporulation protein AEB YP_001487301.1 2110760 R 315750 CDS YP_001487302.1 157692840 5621341 complement(2111110..2112126) 1 NC_009848.1 stage V sporulation protein AD 2112126 spoVAD 5621341 spoVAD Bacillus pumilus SAFR-032 stage V sporulation protein AD YP_001487302.1 2111110 R 315750 CDS YP_001487303.1 157692841 5621342 complement(2112139..2112591) 1 NC_009848.1 stage V sporulation protein AC 2112591 spoVAC 5621342 spoVAC Bacillus pumilus SAFR-032 stage V sporulation protein AC YP_001487303.1 2112139 R 315750 CDS YP_001487304.1 157692842 5621343 complement(2112611..2113027) 1 NC_009848.1 stage V sporulation protein AB 2113027 spoVAB 5621343 spoVAB Bacillus pumilus SAFR-032 stage V sporulation protein AB YP_001487304.1 2112611 R 315750 CDS YP_001487305.1 157692843 5621344 complement(2113017..2113637) 1 NC_009848.1 stage V sporulation protein AA 2113637 spoVAA 5621344 spoVAA Bacillus pumilus SAFR-032 stage V sporulation protein AA YP_001487305.1 2113017 R 315750 CDS YP_001487306.1 157692844 5621345 complement(2113752..2114519) 1 NC_009848.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore.; sporulation sigma factor SigF 2114519 sigF 5621345 sigF Bacillus pumilus SAFR-032 sporulation sigma factor SigF YP_001487306.1 2113752 R 315750 CDS YP_001487307.1 157692845 5621346 complement(2114533..2114973) 1 NC_009848.1 binds to sigma F preventing its association with RNA polymerase during sporulation; anti-sigma F factor 2114973 spoIIAB 5621346 spoIIAB Bacillus pumilus SAFR-032 anti-sigma F factor YP_001487307.1 2114533 R 315750 CDS YP_001487308.1 157692846 5621347 complement(2114970..2115323) 1 NC_009848.1 stage II sporulation protein AA, antagonist of SpoIIAB; stage II sporulation anti-anti-sigma factor 2115323 spoIIAA 5621347 spoIIAA Bacillus pumilus SAFR-032 stage II sporulation anti-anti-sigma factor YP_001487308.1 2114970 R 315750 CDS YP_001487309.1 157692847 5621348 complement(2115485..2116687) 1 NC_009848.1 S11 family D-Ala-D-Ala serine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase 2116687 dacF 5621348 dacF Bacillus pumilus SAFR-032 serine-type D-Ala-D-Ala carboxypeptidase YP_001487309.1 2115485 R 315750 CDS YP_001487310.1 157692848 5621349 complement(2116797..2117609) 1 NC_009848.1 DeoD YqkO Pnp; purine-nucleoside phosphorylase 2117609 punA 5621349 punA Bacillus pumilus SAFR-032 purine-nucleoside phosphorylase YP_001487310.1 2116797 R 315750 CDS YP_001487311.1 157692849 5621350 complement(2117621..2118805) 1 NC_009848.1 catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 2118805 drm 5621350 drm Bacillus pumilus SAFR-032 phosphopentomutase YP_001487311.1 2117621 R 315750 CDS YP_001487312.1 157692850 5621351 complement(2118957..2119847) 1 NC_009848.1 site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 2119847 xerD 5621351 xerD Bacillus pumilus SAFR-032 site-specific tyrosine recombinase XerD YP_001487312.1 2118957 R 315750 CDS YP_001487313.1 157692851 5621352 complement(2119854..2120090) 1 NC_009848.1 hypothetical protein 2120090 5621352 BPUM_2083 Bacillus pumilus SAFR-032 hypothetical protein YP_001487313.1 2119854 R 315750 CDS YP_001487314.1 157692852 5621353 complement(2120199..2120651) 1 NC_009848.1 Fur family transcriptional regulator Fur 2120651 fur 5621353 fur Bacillus pumilus SAFR-032 Fur family transcriptional regulator Fur YP_001487314.1 2120199 R 315750 CDS YP_001487315.1 157692853 5621354 complement(2120770..2121417) 1 NC_009848.1 stage II sporulation protein M 2121417 spoIIM 5621354 spoIIM Bacillus pumilus SAFR-032 stage II sporulation protein M YP_001487315.1 2120770 R 315750 CDS YP_001487316.1 157692854 5621356 complement(2122774..2122995) 1 NC_009848.1 hypothetical protein 2122995 yqkK 5621356 yqkK Bacillus pumilus SAFR-032 hypothetical protein YP_001487316.1 2122774 R 315750 CDS YP_001487317.1 157692855 5621357 complement(2123064..2123516) 1 NC_009848.1 acetyltransferase 2123516 yybD 5621357 yybD Bacillus pumilus SAFR-032 acetyltransferase YP_001487317.1 2123064 R 315750 CDS YP_001487318.1 157692856 5621358 complement(2123503..2124684) 1 NC_009848.1 hypothetical protein 2124684 yqxK 5621358 yqxK Bacillus pumilus SAFR-032 hypothetical protein YP_001487318.1 2123503 R 315750 CDS YP_001487319.1 157692857 5621359 complement(2124681..2125238) 1 NC_009848.1 ADP-ribose diphosphatase 2125238 nudF 5621359 nudF Bacillus pumilus SAFR-032 ADP-ribose diphosphatase YP_001487319.1 2124681 R 315750 CDS YP_001487320.1 157692858 5621360 2125406..2126329 1 NC_009848.1 Tas family dehydrogenase 2126329 yqkF 5621360 yqkF Bacillus pumilus SAFR-032 Tas family dehydrogenase YP_001487320.1 2125406 D 315750 CDS YP_001487321.1 157692859 5621361 complement(2126487..2126876) 1 NC_009848.1 hypothetical protein 2126876 5621361 BPUM_2092 Bacillus pumilus SAFR-032 hypothetical protein YP_001487321.1 2126487 R 315750 CDS YP_001487322.1 157692860 5621362 complement(2127048..2127197) 1 NC_009848.1 hypothetical protein 2127197 5621362 BPUM_2093 Bacillus pumilus SAFR-032 hypothetical protein YP_001487322.1 2127048 R 315750 CDS YP_001487323.1 157692861 5621363 2127249..2127398 1 NC_009848.1 hypothetical protein 2127398 5621363 BPUM_2094 Bacillus pumilus SAFR-032 hypothetical protein YP_001487323.1 2127249 D 315750 CDS YP_001487324.1 157692862 5621364 2127395..2128327 1 NC_009848.1 serine peptidase 2128327 yqkD 5621364 yqkD Bacillus pumilus SAFR-032 serine peptidase YP_001487324.1 2127395 D 315750 CDS YP_001487325.1 157692863 5621365 complement(2128354..2129616) 1 NC_009848.1 aspartate phosphatase response regulator 2129616 rapA3 5621365 rapA3 Bacillus pumilus SAFR-032 aspartate phosphatase response regulator YP_001487325.1 2128354 R 315750 CDS YP_001487326.1 157692864 5621366 complement(2129922..2130161) 1 NC_009848.1 hypothetical protein 2130161 yqkC 5621366 yqkC Bacillus pumilus SAFR-032 hypothetical protein YP_001487326.1 2129922 R 315750 CDS YP_001487327.1 157692865 5621367 complement(2130174..2130500) 1 NC_009848.1 hypothetical protein 2130500 yqkB 5621367 yqkB Bacillus pumilus SAFR-032 hypothetical protein YP_001487327.1 2130174 R 315750 CDS YP_001487328.1 157692866 5621368 complement(2130616..2131593) 1 NC_009848.1 possible GrpB family protein; hypothetical protein 2131593 yqkA 5621368 yqkA Bacillus pumilus SAFR-032 hypothetical protein YP_001487328.1 2130616 R 315750 CDS YP_001487329.1 157692867 5621369 complement(2131590..2132090) 1 NC_009848.1 possible GNAT family acetyltransferase; hypothetical protein 2132090 yqjY 5621369 yqjY Bacillus pumilus SAFR-032 hypothetical protein YP_001487329.1 2131590 R 315750 CDS YP_001487330.1 157692868 5621370 2132344..2132793 1 NC_009848.1 hypothetical protein 2132793 yfmQ 5621370 yfmQ Bacillus pumilus SAFR-032 hypothetical protein YP_001487330.1 2132344 D 315750 CDS YP_001487331.1 157692869 5621371 2132943..2134175 1 NC_009848.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 2134175 polY2 5621371 polY2 Bacillus pumilus SAFR-032 DNA polymerase IV YP_001487331.1 2132943 D 315750 CDS YP_001487332.1 157692870 5621372 2134191..2134535 1 NC_009848.1 YqjX; hypothetical protein 2134535 5621372 BPUM_2103 Bacillus pumilus SAFR-032 hypothetical protein YP_001487332.1 2134191 D 315750 CDS YP_001487333.1 157692871 5621373 2134725..2135960 1 NC_009848.1 YqjV; major facilitator superfamily sugar:cation symporter 2135960 5621373 BPUM_2104 Bacillus pumilus SAFR-032 major facilitator superfamily sugar:cation symporter YP_001487333.1 2134725 D 315750 CDS YP_001487334.1 157692872 5621374 complement(2135991..2136872) 1 NC_009848.1 catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 2136872 coaA 5621374 coaA Bacillus pumilus SAFR-032 pantothenate kinase YP_001487334.1 2135991 R 315750 CDS YP_001487335.1 157692873 5621375 2137137..2138465 1 NC_009848.1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase/NADH dehydrogenase; NADH dehydrogenase 2138465 5621375 BPUM_2106 Bacillus pumilus SAFR-032 NADH dehydrogenase YP_001487335.1 2137137 D 315750 CDS YP_001487336.1 157692874 5621376 complement(2138531..2139307) 1 NC_009848.1 dehydrogenase 2139307 yqjQ 5621376 yqjQ Bacillus pumilus SAFR-032 dehydrogenase YP_001487336.1 2138531 R 315750 CDS YP_001487337.1 157692875 5621377 complement(2139320..2140270) 1 NC_009848.1 zinc metallohydrolase 2140270 yqjP 5621377 yqjP Bacillus pumilus SAFR-032 zinc metallohydrolase YP_001487337.1 2139320 R 315750 CDS YP_001487338.1 157692876 5621378 2140693..2141520 1 NC_009848.1 pyrroline-5-carboxylate reductase 2 2141520 proI 5621378 proI Bacillus pumilus SAFR-032 pyrroline-5-carboxylate reductase 2 YP_001487338.1 2140693 D 315750 CDS YP_001487339.1 157692877 5621379 2141674..2141946 1 NC_009848.1 hypothetical protein 2141946 5621379 BPUM_2110 Bacillus pumilus SAFR-032 hypothetical protein YP_001487339.1 2141674 D 315750 CDS YP_001487340.1 157692878 5621380 complement(2142101..2143714) 1 NC_009848.1 possible arginine degradation protein RocB; M20A subfamily peptidase 2143714 yqjN 5621380 yqjN Bacillus pumilus SAFR-032 M20A subfamily peptidase YP_001487340.1 2142101 R 315750 CDS YP_001487341.1 157692879 5621381 2143856..2144872 1 NC_009848.1 catalyzes the reduction of alpha, beta-unsaturated aldehydes and ketones; reduces the nitro group nitroester and nitroaromatic compounds; NADPH dehydrogenase NamA 2144872 yqjM 5621381 yqjM Bacillus pumilus SAFR-032 NADPH dehydrogenase NamA YP_001487341.1 2143856 D 315750 CDS YP_001487342.1 157692880 5621382 2144993..2145757 1 NC_009848.1 hydrolase 2145757 yqjL 5621382 yqjL Bacillus pumilus SAFR-032 hydrolase YP_001487342.1 2144993 D 315750 CDS YP_001487343.1 157692881 5621383 complement(2145803..2147110) 1 NC_009848.1 aminotransferase 2147110 5621383 BPUM_2114 Bacillus pumilus SAFR-032 aminotransferase YP_001487343.1 2145803 R 315750 CDS YP_001487344.1 157692882 5621384 complement(2147250..2148179) 1 NC_009848.1 member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z 2148179 rnz 5621384 rnz Bacillus pumilus SAFR-032 ribonuclease Z YP_001487344.1 2147250 R 315750 CDS YP_001487345.1 157692883 5621385 2148402..2149877 1 NC_009848.1 catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2149877 zwf 5621385 zwf Bacillus pumilus SAFR-032 glucose-6-phosphate 1-dehydrogenase YP_001487345.1 2148402 D 315750 CDS YP_001487346.1 157692884 5621386 complement(2149924..2150646) 1 NC_009848.1 transcriptional regulator 2150646 ydhQ 5621386 ydhQ Bacillus pumilus SAFR-032 transcriptional regulator YP_001487346.1 2149924 R 315750 CDS YP_001487347.1 157692885 5621387 complement(2150800..2152206) 1 NC_009848.1 6-phospho-beta-glucosidase 2152206 ydhP 5621387 ydhP Bacillus pumilus SAFR-032 6-phospho-beta-glucosidase YP_001487347.1 2150800 R 315750 CDS YP_001487348.1 157692886 5621388 complement(2152190..2153536) 1 NC_009848.1 spore transporter YdhO; PTS family cellobiose porter component IIC 2153536 ydhO 5621388 ydhO Bacillus pumilus SAFR-032 PTS family cellobiose porter component IIC YP_001487348.1 2152190 R 315750 CDS YP_001487349.1 157692887 5621389 complement(2153562..2153894) 1 NC_009848.1 PTS system cellobiose transporter subunit IIA 2153894 ydhN 5621389 ydhN Bacillus pumilus SAFR-032 PTS system cellobiose transporter subunit IIA YP_001487349.1 2153562 R 315750 CDS YP_001487350.1 157692888 5621390 complement(2153898..2154209) 1 NC_009848.1 PTS family cellobiose porter component IIB 2154209 ydhM 5621390 ydhM Bacillus pumilus SAFR-032 PTS family cellobiose porter component IIB YP_001487350.1 2153898 R 315750 CDS YP_001487351.1 157692889 5621391 complement(2154352..2155137) 1 NC_009848.1 Converts glucose to D-glucono-1,5 lactone; glucose-1-dehydrogenase 2155137 gdh 5621391 gdh Bacillus pumilus SAFR-032 glucose-1-dehydrogenase YP_001487351.1 2154352 R 315750 CDS YP_001487352.1 157692890 5621392 complement(2155150..2155998) 1 NC_009848.1 glucose uptake protein YcxE; DMT superfamily drug/metabolite transporter 2155998 glcU 5621392 glcU Bacillus pumilus SAFR-032 DMT superfamily drug/metabolite transporter YP_001487352.1 2155150 R 315750 CDS YP_001487353.1 157692891 5621393 complement(2156116..2157525) 1 NC_009848.1 catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 2157525 yqjI 5621393 yqjI Bacillus pumilus SAFR-032 6-phosphogluconate dehydrogenase YP_001487353.1 2156116 R 315750 CDS YP_001487354.1 157692892 5621394 complement(2157624..2158868) 1 NC_009848.1 involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 2158868 polY1 5621394 polY1 Bacillus pumilus SAFR-032 DNA polymerase IV YP_001487354.1 2157624 R 315750 CDS YP_001487355.1 157692893 5621395 complement(2159014..2160021) 1 NC_009848.1 cyanide dihydratase 2160021 cynD 5621395 cynD Bacillus pumilus SAFR-032 cyanide dihydratase YP_001487355.1 2159014 R 315750 CDS YP_001487356.1 157692894 5621396 2160187..2160468 1 NC_009848.1 hypothetical protein 2160468 yqzJ 5621396 yqzJ Bacillus pumilus SAFR-032 hypothetical protein YP_001487356.1 2160187 D 315750 CDS YP_001487357.1 157692895 5621397 2160496..2161314 1 NC_009848.1 involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site; OxaA-like protein precursor 2161314 oxaA2 5621397 oxaA2 Bacillus pumilus SAFR-032 OxaA-like protein precursor YP_001487357.1 2160496 D 315750 CDS YP_001487358.1 157692896 5621398 complement(2161555..2162019) 1 NC_009848.1 chemotaxis signal transduction protein 2162019 5621398 BPUM_2129 Bacillus pumilus SAFR-032 chemotaxis signal transduction protein YP_001487358.1 2161555 R 315750 CDS YP_001487359.1 157692897 5621399 complement(2162034..2163155) 1 NC_009848.1 M20B subfamily peptidase 2163155 yqjE 5621399 yqjE Bacillus pumilus SAFR-032 M20B subfamily peptidase YP_001487359.1 2162034 R 315750 CDS YP_001487360.1 157692898 5621400 complement(2163172..2164641) 1 NC_009848.1 propionyl-CoA carboxylase subunit beta 2164641 yqjD 5621400 yqjD Bacillus pumilus SAFR-032 propionyl-CoA carboxylase subunit beta YP_001487360.1 2163172 R 315750 CDS YP_001487361.1 157692899 5621401 complement(2164628..2165050) 1 NC_009848.1 glyoxalase/bleomycin resistance protein/dioxygenase family protein 2165050 yqjC 5621401 yqjC Bacillus pumilus SAFR-032 glyoxalase/bleomycin resistance protein/dioxygenase family protein YP_001487361.1 2164628 R 315750 CDS YP_001487362.1 157692900 5621402 2165042..2165245 1 NC_009848.1 hypothetical protein 2165245 5621402 BPUM_2133 Bacillus pumilus SAFR-032 hypothetical protein YP_001487362.1 2165042 D 315750 CDS YP_001487363.1 157692901 5621403 complement(2165284..2165793) 1 NC_009848.1 hypothetical protein 2165793 5621403 BPUM_2134 Bacillus pumilus SAFR-032 hypothetical protein YP_001487363.1 2165284 R 315750 CDS YP_001487364.1 157692902 5621404 complement(2165846..2166799) 1 NC_009848.1 hypothetical protein 2166799 yqjA 5621404 yqjA Bacillus pumilus SAFR-032 hypothetical protein YP_001487364.1 2165846 R 315750 CDS YP_001487365.1 157692903 5621405 complement(2166921..2167643) 1 NC_009848.1 ABC transporter ATP-binding protein 2167643 yqiZ 5621405 yqiZ Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001487365.1 2166921 R 315750 CDS YP_001487366.1 157692904 5621406 complement(2167636..2168328) 1 NC_009848.1 ABC transporter ATP-binding protein 2168328 yqiY 5621406 yqiY Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001487366.1 2167636 R 315750 CDS YP_001487367.1 157692905 5621407 complement(2168419..2169183) 1 NC_009848.1 amino acid ABC transporter ATP-binding protein 2169183 yqiX 5621407 yqiX Bacillus pumilus SAFR-032 amino acid ABC transporter ATP-binding protein YP_001487367.1 2168419 R 315750 CDS YP_001487368.1 157692906 5621408 complement(2169379..2169816) 1 NC_009848.1 hypothetical protein 2169816 yqiW 5621408 yqiW Bacillus pumilus SAFR-032 hypothetical protein YP_001487368.1 2169379 R 315750 CDS YP_001487369.1 157692907 5621409 2169987..2170880 1 NC_009848.1 diacylglycerol kinase 2170880 bmrU 5621409 bmrU Bacillus pumilus SAFR-032 diacylglycerol kinase YP_001487369.1 2169987 D 315750 CDS YP_001487370.1 157692908 5621410 complement(2170896..2171288) 1 NC_009848.1 hypothetical protein 2171288 yesK 5621410 yesK Bacillus pumilus SAFR-032 hypothetical protein YP_001487370.1 2170896 R 315750 CDS YP_001487371.1 157692909 5621411 complement(2171254..2172510) 1 NC_009848.1 BkdB; branched-chain alpha-keto acid dehydrogenase subunit E2 2172510 bfmBB 5621411 bfmBB Bacillus pumilus SAFR-032 branched-chain alpha-keto acid dehydrogenase subunit E2 YP_001487371.1 2171254 R 315750 CDS YP_001487372.1 157692910 5621412 complement(2172529..2173512) 1 NC_009848.1 BkdA2; 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) beta subunit 2173512 bfmBAB 5621412 bfmBAB Bacillus pumilus SAFR-032 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) beta subunit YP_001487372.1 2172529 R 315750 CDS YP_001487373.1 157692911 5621413 complement(2173525..2174517) 1 NC_009848.1 BkdA1; 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) alpha subunit 2174517 bfmBAA 5621413 bfmBAA Bacillus pumilus SAFR-032 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) alpha subunit YP_001487373.1 2173525 R 315750 CDS YP_001487374.1 157692912 5621414 complement(2174535..2175959) 1 NC_009848.1 E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 2175959 bfmBC 5621414 bfmBC Bacillus pumilus SAFR-032 dihydrolipoamide dehydrogenase YP_001487374.1 2174535 R 315750 CDS YP_001487375.1 157692913 5621415 complement(2175949..2177070) 1 NC_009848.1 catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase 2177070 buk 5621415 buk Bacillus pumilus SAFR-032 butyrate kinase YP_001487375.1 2175949 R 315750 CDS YP_001487376.1 157692914 5621416 complement(2177104..2178198) 1 NC_009848.1 YqiT; leucine dehydrogenase 2178198 bcd 5621416 bcd Bacillus pumilus SAFR-032 leucine dehydrogenase YP_001487376.1 2177104 R 315750 CDS YP_001487377.1 157692915 5621417 complement(2178224..2179117) 1 NC_009848.1 catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate; phosphate butyryltransferase 2179117 5621417 BPUM_2148 Bacillus pumilus SAFR-032 phosphate butyryltransferase YP_001487377.1 2178224 R 315750 CDS YP_001487378.1 157692916 5621418 complement(2179244..2181316) 1 NC_009848.1 sigma L-dependent transcriptional regulator; transcriptional regulator 2181316 rocR 5621418 rocR Bacillus pumilus SAFR-032 transcriptional regulator YP_001487378.1 2179244 R 315750 CDS YP_001487379.1 157692917 5621419 2181466..2181702 1 NC_009848.1 hypothetical protein 2181702 yqzF 5621419 yqzF Bacillus pumilus SAFR-032 hypothetical protein YP_001487379.1 2181466 D 315750 CDS YP_001487380.1 157692918 5621420 complement(2181738..2182475) 1 NC_009848.1 glycerophosphodiester phosphodiesterase 2182475 glpQ 5621420 glpQ Bacillus pumilus SAFR-032 glycerophosphodiester phosphodiesterase YP_001487380.1 2181738 R 315750 CDS YP_001487381.1 157692919 5621421 complement(2182706..2183806) 1 NC_009848.1 hypothetical protein 2183806 5621421 BPUM_2152 Bacillus pumilus SAFR-032 hypothetical protein YP_001487381.1 2182706 R 315750 CDS YP_001487382.1 157692920 5621422 complement(2183794..2184084) 1 NC_009848.1 hypothetical protein 2184084 5621422 BPUM_2153 Bacillus pumilus SAFR-032 hypothetical protein YP_001487382.1 2183794 R 315750 CDS YP_001487383.1 157692921 5621423 complement(2184263..2185066) 1 NC_009848.1 stage 0 sporulation protein A 2185066 spo0A 5621423 spo0A Bacillus pumilus SAFR-032 stage 0 sporulation protein A YP_001487383.1 2184263 R 315750 CDS YP_001487384.1 157692922 5621424 complement(2185352..2186629) 1 NC_009848.1 stage IV sporulation S55 family serine peptidase 2186629 spoIVB 5621424 spoIVB Bacillus pumilus SAFR-032 stage IV sporulation S55 family serine peptidase YP_001487384.1 2185352 R 315750 CDS YP_001487385.1 157692923 5621425 complement(2186828..2188564) 1 NC_009848.1 DNA repair protein RecN 2188564 recN 5621425 recN Bacillus pumilus SAFR-032 DNA repair protein RecN YP_001487385.1 2186828 R 315750 CDS YP_001487386.1 157692924 5621426 complement(2188598..2189047) 1 NC_009848.1 regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor 2189047 ahrC 5621426 ahrC Bacillus pumilus SAFR-032 arginine repressor YP_001487386.1 2188598 R 315750 CDS YP_001487387.1 157692925 5621427 complement(2189208..2190062) 1 NC_009848.1 hemolysin A 2190062 yqxC 5621427 yqxC Bacillus pumilus SAFR-032 hemolysin A YP_001487387.1 2189208 R 315750 CDS YP_001487388.1 157692926 5621428 complement(2190059..2191960) 1 NC_009848.1 catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 2191960 dxs 5621428 dxs Bacillus pumilus SAFR-032 1-deoxy-D-xylulose-5-phosphate synthase YP_001487388.1 2190059 R 315750 CDS YP_001487389.1 157692927 5621429 complement(2192111..2193001) 1 NC_009848.1 geranyltranstransferase 2193001 yqiD 5621429 yqiD Bacillus pumilus SAFR-032 geranyltranstransferase YP_001487389.1 2192111 R 315750 CDS YP_001487390.1 157692928 5621430 complement(2192991..2193251) 1 NC_009848.1 catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit 2193251 xseB 5621430 xseB Bacillus pumilus SAFR-032 exodeoxyribonuclease VII small subunit YP_001487390.1 2192991 R 315750 CDS YP_001487391.1 157692929 5621431 complement(2193248..2194594) 1 NC_009848.1 bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 2194594 xseA 5621431 xseA Bacillus pumilus SAFR-032 exodeoxyribonuclease VII large subunit YP_001487391.1 2193248 R 315750 CDS YP_001487392.1 157692930 5621432 complement(2194665..2195516) 1 NC_009848.1 catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase 2195516 folD 5621432 folD Bacillus pumilus SAFR-032 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase YP_001487392.1 2194665 R 315750 CDS YP_001487393.1 157692931 5621433 complement(2195528..2195923) 1 NC_009848.1 Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 2195923 nusB 5621433 nusB Bacillus pumilus SAFR-032 transcription antitermination protein NusB YP_001487393.1 2195528 R 315750 CDS YP_001487394.1 157692932 5621434 complement(2196134..2196541) 1 NC_009848.1 hypothetical protein 2196541 yqhY 5621434 yqhY Bacillus pumilus SAFR-032 hypothetical protein YP_001487394.1 2196134 R 315750 CDS YP_001487395.1 157692933 5621435 complement(2196567..2197916) 1 NC_009848.1 an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 2197916 accC 5621435 accC Bacillus pumilus SAFR-032 acetyl-CoA carboxylase biotin carboxylase subunit YP_001487395.1 2196567 R 315750 CDS YP_001487396.1 157692934 5621436 complement(2197928..2198410) 1 NC_009848.1 composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 2198410 accB 5621436 accB Bacillus pumilus SAFR-032 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit YP_001487396.1 2197928 R 315750 CDS YP_001487397.1 157692935 5621437 complement(2198607..2199242) 1 NC_009848.1 stage III sporulation protein AH 2199242 spoIIIAH 5621437 spoIIIAH Bacillus pumilus SAFR-032 stage III sporulation protein AH YP_001487397.1 2198607 R 315750 CDS YP_001487398.1 157692936 5621438 complement(2199239..2199910) 1 NC_009848.1 stage III sporulation protein AG 2199910 spoIIIAG 5621438 spoIIIAG Bacillus pumilus SAFR-032 stage III sporulation protein AG YP_001487398.1 2199239 R 315750 CDS YP_001487399.1 157692937 5621439 complement(2199903..2200535) 1 NC_009848.1 stage III sporulation protein AF 2200535 spoIIIAF 5621439 spoIIIAF Bacillus pumilus SAFR-032 stage III sporulation protein AF YP_001487399.1 2199903 R 315750 CDS YP_001487400.1 157692938 5621440 complement(2200550..2201743) 1 NC_009848.1 stage III sporulation protein AE 2201743 spoIIIAE 5621440 spoIIIAE Bacillus pumilus SAFR-032 stage III sporulation protein AE YP_001487400.1 2200550 R 315750 CDS YP_001487401.1 157692939 5621441 complement(2201763..2202071) 1 NC_009848.1 stage III sporulation protein AD 2202071 spoIIIAD 5621441 spoIIIAD Bacillus pumilus SAFR-032 stage III sporulation protein AD YP_001487401.1 2201763 R 315750 CDS YP_001487402.1 157692940 5621442 complement(2202173..2202379) 1 NC_009848.1 stage III sporulation protein AC 2202379 spoIIIAC 5621442 spoIIIAC Bacillus pumilus SAFR-032 stage III sporulation protein AC YP_001487402.1 2202173 R 315750 CDS YP_001487403.1 157692941 5621443 complement(2202399..2202914) 1 NC_009848.1 necessary for complete engulfment of forespore; stage III sporulation protein SpoAB 2202914 spoIIIAB 5621443 spoIIIAB Bacillus pumilus SAFR-032 stage III sporulation protein SpoAB YP_001487403.1 2202399 R 315750 CDS YP_001487404.1 157692942 5621444 complement(2202908..2203831) 1 NC_009848.1 stage III sporulation protein AA 2203831 spoIIIAA 5621444 spoIIIAA Bacillus pumilus SAFR-032 stage III sporulation protein AA YP_001487404.1 2202908 R 315750 CDS YP_001487405.1 157692943 5621445 complement(2203898..2204179) 1 NC_009848.1 hypothetical protein 2204179 yqhV 5621445 yqhV Bacillus pumilus SAFR-032 hypothetical protein YP_001487405.1 2203898 R 315750 CDS YP_001487406.1 157692944 5621446 complement(2204559..2205116) 1 NC_009848.1 Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 2205116 efp 5621446 efp Bacillus pumilus SAFR-032 elongation factor P YP_001487406.1 2204559 R 315750 CDS YP_001487407.1 157692945 5621447 complement(2205142..2206203) 1 NC_009848.1 M24B subfamily peptidase 2206203 yqhT 5621447 yqhT Bacillus pumilus SAFR-032 M24B subfamily peptidase YP_001487407.1 2205142 R 315750 CDS YP_001487408.1 157692946 5621448 complement(2206200..2206643) 1 NC_009848.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 2206643 aroQ 5621448 aroQ Bacillus pumilus SAFR-032 3-dehydroquinate dehydratase YP_001487408.1 2206200 R 315750 CDS YP_001487409.1 157692947 5621449 complement(2206752..2207279) 1 NC_009848.1 hypothetical protein 2207279 yqhR 5621449 yqhR Bacillus pumilus SAFR-032 hypothetical protein YP_001487409.1 2206752 R 315750 CDS YP_001487410.1 157692948 5621450 2207502..2208458 1 NC_009848.1 hypothetical protein 2208458 yqhQ 5621450 yqhQ Bacillus pumilus SAFR-032 hypothetical protein YP_001487410.1 2207502 D 315750 CDS YP_001487411.1 157692949 5621451 2208497..2208892 1 NC_009848.1 hypothetical protein 2208892 yqhP 5621451 yqhP Bacillus pumilus SAFR-032 hypothetical protein YP_001487411.1 2208497 D 315750 CDS YP_001487412.1 157692950 5621452 complement(2208889..2209764) 1 NC_009848.1 esterase 2209764 yqhO 5621452 yqhO Bacillus pumilus SAFR-032 esterase YP_001487412.1 2208889 R 315750 CDS YP_001487413.1 157692951 5621453 complement(2209868..2210302) 1 NC_009848.1 involved in manganese homeostasis; activates the transcription of the mntABCD operon; manganese transport transcriptional regulator 2210302 5621453 BPUM_2184 Bacillus pumilus SAFR-032 manganese transport transcriptional regulator YP_001487413.1 2209868 R 315750 CDS YP_001487414.1 157692952 5621454 complement(2210389..2211225) 1 NC_009848.1 YqhM; lipoate protein ligase A 2211225 5621454 BPUM_2185 Bacillus pumilus SAFR-032 lipoate protein ligase A YP_001487414.1 2210389 R 315750 CDS YP_001487415.1 157692953 5621455 2211440..2211826 1 NC_009848.1 possible rhodanese homology domain containing protein; hypothetical protein 2211826 yqhL 5621455 yqhL Bacillus pumilus SAFR-032 hypothetical protein YP_001487415.1 2211440 D 315750 CDS YP_001487416.1 157692954 5621456 complement(2211870..2213360) 1 NC_009848.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 2213360 gcvPB 5621456 gcvPB Bacillus pumilus SAFR-032 glycine dehydrogenase subunit 2 YP_001487416.1 2211870 R 315750 CDS YP_001487417.1 157692955 5621457 complement(2213320..2214666) 1 NC_009848.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 2214666 gcvPA 5621457 gcvPA Bacillus pumilus SAFR-032 glycine dehydrogenase subunit 1 YP_001487417.1 2213320 R 315750 CDS YP_001487418.1 157692956 5621458 complement(2214683..2215780) 1 NC_009848.1 glycine cleavage system protein T; aminomethyltransferase 2215780 gcvT 5621458 gcvT Bacillus pumilus SAFR-032 aminomethyltransferase YP_001487418.1 2214683 R 315750 CDS YP_001487419.1 157692957 5621459 2216342..2218012 1 NC_009848.1 possible DEAD/DEAH box helicase; SNF2 family helicase 2218012 yqhH 5621459 yqhH Bacillus pumilus SAFR-032 SNF2 family helicase YP_001487419.1 2216342 D 315750 CDS YP_001487420.1 157692958 5621460 2218027..2218824 1 NC_009848.1 hypothetical protein 2218824 yqhG 5621460 yqhG Bacillus pumilus SAFR-032 hypothetical protein YP_001487420.1 2218027 D 315750 CDS YP_001487421.1 157692959 5621461 2219007..2219171 1 NC_009848.1 SinR antagonist 2219171 sinI 5621461 sinI Bacillus pumilus SAFR-032 SinR antagonist YP_001487421.1 2219007 D 315750 CDS YP_001487422.1 157692960 5621462 2219205..2219540 1 NC_009848.1 transcriptional regulator SinR 2219540 sinR 5621462 sinR Bacillus pumilus SAFR-032 transcriptional regulator SinR YP_001487422.1 2219205 D 315750 CDS YP_001487423.1 157692961 5621463 complement(2219608..2220408) 1 NC_009848.1 spore coat-associated protein TasA,YqhF; translocation-dependent anti spore component 2220408 cotN 5621463 cotN Bacillus pumilus SAFR-032 translocation-dependent anti spore component YP_001487423.1 2219608 R 315750 CDS YP_001487424.1 157692962 5621464 complement(2220466..2221038) 1 NC_009848.1 signal peptidase 2221038 sipW 5621464 sipW Bacillus pumilus SAFR-032 signal peptidase YP_001487424.1 2220466 R 315750 CDS YP_001487425.1 157692963 5621465 complement(2221090..2221617) 1 NC_009848.1 hypothetical protein 2221617 yqxM 5621465 yqxM Bacillus pumilus SAFR-032 hypothetical protein YP_001487425.1 2221090 R 315750 CDS YP_001487426.1 157692964 5621466 2221869..2222195 1 NC_009848.1 hypothetical protein 2222195 yqzG 5621466 yqzG Bacillus pumilus SAFR-032 hypothetical protein YP_001487426.1 2221869 D 315750 CDS YP_001487427.1 157692965 5621467 complement(2222230..2222424) 1 NC_009848.1 hypothetical protein 2222424 yqzE 5621467 yqzE Bacillus pumilus SAFR-032 hypothetical protein YP_001487427.1 2222230 R 315750 CDS YP_001487428.1 157692966 5621468 complement(2222484..2222867) 1 NC_009848.1 hypothetical protein 2222867 5621468 BPUM_2199 Bacillus pumilus SAFR-032 hypothetical protein YP_001487428.1 2222484 R 315750 CDS YP_001487429.1 157692967 5621469 complement(2222864..2223313) 1 NC_009848.1 competence protein GF 2223313 comGF 5621469 comGF Bacillus pumilus SAFR-032 competence protein GF YP_001487429.1 2222864 R 315750 CDS YP_001487430.1 157692968 5621470 complement(2223303..2223620) 1 NC_009848.1 competence protein GE 2223620 comGE 5621470 comGE Bacillus pumilus SAFR-032 competence protein GE YP_001487430.1 2223303 R 315750 CDS YP_001487431.1 157692969 5621471 complement(2223604..2223999) 1 NC_009848.1 competence protein GD 2223999 comGD 5621471 comGD Bacillus pumilus SAFR-032 competence protein GD YP_001487431.1 2223604 R 315750 CDS YP_001487432.1 157692970 5621472 complement(2224043..2224336) 1 NC_009848.1 exogenous DNA-binding protein; competence protein GC 2224336 comGC 5621472 comGC Bacillus pumilus SAFR-032 competence protein GC YP_001487432.1 2224043 R 315750 CDS YP_001487433.1 157692971 5621473 complement(2224353..2225393) 1 NC_009848.1 competence protein GB 2225393 comGB 5621473 comGB Bacillus pumilus SAFR-032 competence protein GB YP_001487433.1 2224353 R 315750 CDS YP_001487434.1 157692972 5621474 complement(2225374..2226444) 1 NC_009848.1 competence protein GA 2226444 comGA 5621474 comGA Bacillus pumilus SAFR-032 competence protein GA YP_001487434.1 2225374 R 315750 CDS YP_001487435.1 157692973 5621475 complement(2226622..2227494) 1 NC_009848.1 possible stage II sporulation anti-anti-sigma factor SpoIIAA; hypothetical protein 2227494 yqhA 5621475 yqhA Bacillus pumilus SAFR-032 hypothetical protein YP_001487435.1 2226622 R 315750 CDS YP_001487436.1 157692974 5621477 complement(2227717..2228097) 1 NC_009848.1 ArsC family transcription regulator 2228097 yqgZ 5621477 yqgZ Bacillus pumilus SAFR-032 ArsC family transcription regulator YP_001487436.1 2227717 R 315750 CDS YP_001487437.1 157692975 5621478 2228311..2228553 1 NC_009848.1 hypothetical protein 2228553 yqgY 5621478 yqgY Bacillus pumilus SAFR-032 hypothetical protein YP_001487437.1 2228311 D 315750 CDS YP_001487438.1 157692976 5621479 complement(2228600..2229244) 1 NC_009848.1 possible zinc (Zn) dependent hydrolase; hypothetical protein 2229244 yqgX 5621479 yqgX Bacillus pumilus SAFR-032 hypothetical protein YP_001487438.1 2228600 R 315750 CDS YP_001487439.1 157692977 5621480 2229372..2229569 1 NC_009848.1 hypothetical protein 2229569 yqgW 5621480 yqgW Bacillus pumilus SAFR-032 hypothetical protein YP_001487439.1 2229372 D 315750 CDS YP_001487440.1 157692978 5621481 complement(2229794..2230108) 1 NC_009848.1 hypothetical protein 2230108 yqgV 5621481 yqgV Bacillus pumilus SAFR-032 hypothetical protein YP_001487440.1 2229794 R 315750 CDS YP_001487441.1 157692979 5621482 complement(2230187..2231641) 1 NC_009848.1 major facilitator superfamily transporter 2231641 yvqJ2 5621482 yvqJ2 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001487441.1 2230187 R 315750 CDS YP_001487442.1 157692980 5621483 complement(2231598..2232722) 1 NC_009848.1 possible zinc (Zn) peptidase; M14 family gamma-D-glutamyl-{L}-meso-diaminopimelate peptidase 1 2232722 yqgT 5621483 yqgT Bacillus pumilus SAFR-032 M14 family gamma-D-glutamyl-{L}-meso-diaminopimelate peptidase 1 YP_001487442.1 2231598 R 315750 CDS YP_001487443.1 157692981 5621484 complement(2232809..2234728) 1 NC_009848.1 MdoB; phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase 2234728 yqgS 5621484 yqgS Bacillus pumilus SAFR-032 phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase YP_001487443.1 2232809 R 315750 CDS YP_001487444.1 157692982 5621485 complement(2234942..2235895) 1 NC_009848.1 transcriptional regulator NagC; glucokinase 2235895 glcK 5621485 glcK Bacillus pumilus SAFR-032 glucokinase YP_001487444.1 2234942 R 315750 CDS YP_001487445.1 157692983 5621486 complement(2235909..2236124) 1 NC_009848.1 hypothetical protein 2236124 yqgQ 5621486 yqgQ Bacillus pumilus SAFR-032 hypothetical protein YP_001487445.1 2235909 R 315750 CDS YP_001487446.1 157692984 5621487 complement(2236183..2237721) 1 NC_009848.1 possible rhomboid family protease; peptidase 2237721 yqgP 5621487 yqgP Bacillus pumilus SAFR-032 peptidase YP_001487446.1 2236183 R 315750 CDS YP_001487447.1 157692985 5621488 complement(2237808..2237984) 1 NC_009848.1 hypothetical protein 2237984 yqgO 5621488 yqgO Bacillus pumilus SAFR-032 hypothetical protein YP_001487447.1 2237808 R 315750 CDS YP_001487448.1 157692986 5621489 complement(2238218..2238778) 1 NC_009848.1 5-formyltetrahydrofolate cyclo-ligase 2238778 yqgN 5621489 yqgN Bacillus pumilus SAFR-032 5-formyltetrahydrofolate cyclo-ligase YP_001487448.1 2238218 R 315750 CDS YP_001487449.1 157692987 5621490 complement(2238827..2238976) 1 NC_009848.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 2238976 rpmG 5621490 rpmG Bacillus pumilus SAFR-032 50S ribosomal protein L33 YP_001487449.1 2238827 R 315750 CDS YP_001487450.1 157692988 5621491 2239396..2239743 1 NC_009848.1 hypothetical protein 2239743 yqzD 5621491 yqzD Bacillus pumilus SAFR-032 hypothetical protein YP_001487450.1 2239396 D 315750 CDS YP_001487451.1 157692989 5621492 2239740..2240240 1 NC_009848.1 hypothetical protein 2240240 yqzC 5621492 yqzC Bacillus pumilus SAFR-032 hypothetical protein YP_001487451.1 2239740 D 315750 CDS YP_001487452.1 157692990 5621493 complement(2240283..2241074) 1 NC_009848.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 2241074 pstBB 5621493 pstBB Bacillus pumilus SAFR-032 phosphate ABC transporter ATP-binding protein YP_001487452.1 2240283 R 315750 CDS YP_001487453.1 157692991 5621494 complement(2241080..2241892) 1 NC_009848.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein 2241892 pstBA 5621494 pstBA Bacillus pumilus SAFR-032 phosphate ABC transporter ATP-binding protein YP_001487453.1 2241080 R 315750 CDS YP_001487454.1 157692992 5621495 complement(2241916..2242800) 1 NC_009848.1 phosphate ABC transporter ATP-binding protein 2242800 pstA 5621495 pstA Bacillus pumilus SAFR-032 phosphate ABC transporter ATP-binding protein YP_001487454.1 2241916 R 315750 CDS YP_001487455.1 157692993 5621496 complement(2242800..2243726) 1 NC_009848.1 phosphate ABC transporter ATP-binding protein 2243726 pstC 5621496 pstC Bacillus pumilus SAFR-032 phosphate ABC transporter ATP-binding protein YP_001487455.1 2242800 R 315750 CDS YP_001487456.1 157692994 5621497 complement(2243806..2244723) 1 NC_009848.1 phosphate ABC transporter ATP-binding protein 2244723 pstS 5621497 pstS Bacillus pumilus SAFR-032 phosphate ABC transporter ATP-binding protein YP_001487456.1 2243806 R 315750 CDS YP_001487457.1 157692995 5621498 complement(2244938..2247139) 1 NC_009848.1 cell division protein FtsI; penicillin-binding protein 2A 2247139 pbpA 5621498 pbpA Bacillus pumilus SAFR-032 penicillin-binding protein 2A YP_001487457.1 2244938 R 315750 CDS YP_001487458.1 157692996 5621499 complement(2247196..2248482) 1 NC_009848.1 major facilitator superfamily sugar transporter 2248482 yqgE 5621499 yqgE Bacillus pumilus SAFR-032 major facilitator superfamily sugar transporter YP_001487458.1 2247196 R 315750 CDS YP_001487459.1 157692997 5621500 complement(2248605..2249213) 1 NC_009848.1 manganese (Mn) superoxide dismutase SodA 2249213 sodA 5621500 sodA Bacillus pumilus SAFR-032 manganese (Mn) superoxide dismutase SodA YP_001487459.1 2248605 R 315750 CDS YP_001487460.1 157692998 5621501 complement(2249400..2249885) 1 NC_009848.1 hypothetical protein 2249885 yqgC 5621501 yqgC Bacillus pumilus SAFR-032 hypothetical protein YP_001487460.1 2249400 R 315750 CDS YP_001487461.1 157692999 5621502 2250029..2250799 1 NC_009848.1 hypothetical protein 2250799 yqgB 5621502 yqgB Bacillus pumilus SAFR-032 hypothetical protein YP_001487461.1 2250029 D 315750 CDS YP_001487462.1 157693000 5621503 complement(2250855..2251484) 1 NC_009848.1 ribosomal-protein-alanine N-acetyltransferase 2251484 5621503 BPUM_2233 Bacillus pumilus SAFR-032 ribosomal-protein-alanine N-acetyltransferase YP_001487462.1 2250855 R 315750 CDS YP_001487463.1 157693001 5621504 2251590..2251892 1 NC_009848.1 possible LysM family peptidoglycan catabolism protein; hypothetical protein 2251892 yqfZ 5621504 yqfZ Bacillus pumilus SAFR-032 hypothetical protein YP_001487463.1 2251590 D 315750 CDS YP_001487464.1 157693002 5621505 2251998..2253110 1 NC_009848.1 catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2253110 ispG 5621505 ispG Bacillus pumilus SAFR-032 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_001487464.1 2251998 D 315750 CDS YP_001487465.1 157693003 5621506 complement(2253157..2253519) 1 NC_009848.1 hypothetical protein 2253519 yqfX 5621506 yqfX Bacillus pumilus SAFR-032 hypothetical protein YP_001487465.1 2253157 R 315750 CDS YP_001487466.1 157693004 5621507 2253659..2254237 1 NC_009848.1 hypothetical protein 2254237 yqfW 5621507 yqfW Bacillus pumilus SAFR-032 hypothetical protein YP_001487466.1 2253659 D 315750 CDS YP_001487467.1 157693005 5621508 complement(2254457..2255374) 1 NC_009848.1 NagC/XylR family transcriptional regulator 2255374 5621508 BPUM_2238 Bacillus pumilus SAFR-032 NagC/XylR family transcriptional regulator YP_001487467.1 2254457 R 315750 CDS YP_001487468.1 157693006 5621509 complement(2255596..2256210) 1 NC_009848.1 internalin G 2256210 5621509 BPUM_2239 Bacillus pumilus SAFR-032 internalin G YP_001487468.1 2255596 R 315750 CDS YP_001487469.1 157693007 5621510 complement(2256247..2256408) 1 NC_009848.1 hypothetical protein 2256408 5621510 BPUM_2240 Bacillus pumilus SAFR-032 hypothetical protein YP_001487469.1 2256247 R 315750 CDS YP_001487470.1 157693008 5621511 complement(2256646..2257074) 1 NC_009848.1 zinc-specific metalloregulatory protein YqfV; Fur family transcriptional regulator Zur 2257074 zur 5621511 zur Bacillus pumilus SAFR-032 Fur family transcriptional regulator Zur YP_001487470.1 2256646 R 315750 CDS YP_001487471.1 157693009 5621512 complement(2257052..2257912) 1 NC_009848.1 ABC transporter ATP-binding protein 2257912 yceA 5621512 yceA Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001487471.1 2257052 R 315750 CDS YP_001487472.1 157693010 5621513 complement(2257912..2258688) 1 NC_009848.1 iron ABC transporter permease 2258688 ycdI 5621513 ycdI Bacillus pumilus SAFR-032 iron ABC transporter permease YP_001487472.1 2257912 R 315750 CDS YP_001487473.1 157693011 5621514 complement(2258824..2259702) 1 NC_009848.1 hypothetical protein 2259702 yqfU 5621514 yqfU Bacillus pumilus SAFR-032 hypothetical protein YP_001487473.1 2258824 R 315750 CDS YP_001487474.1 157693012 5621515 2259842..2260096 1 NC_009848.1 hypothetical protein 2260096 yqfT 5621515 yqfT Bacillus pumilus SAFR-032 hypothetical protein YP_001487474.1 2259842 D 315750 CDS YP_001487475.1 157693013 5621516 complement(2260145..2261035) 1 NC_009848.1 Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV 2261035 nfo 5621516 nfo Bacillus pumilus SAFR-032 endonuclease IV YP_001487475.1 2260145 R 315750 CDS YP_001487476.1 157693014 5621517 complement(2261049..2262368) 1 NC_009848.1 ATP-dependent RNA helicase 2262368 yqfR 5621517 yqfR Bacillus pumilus SAFR-032 ATP-dependent RNA helicase YP_001487476.1 2261049 R 315750 CDS YP_001487477.1 157693015 5621518 2262524..2263225 1 NC_009848.1 spore protein YqfQ 2263225 yqfQ 5621518 yqfQ Bacillus pumilus SAFR-032 spore protein YqfQ YP_001487477.1 2262524 D 315750 CDS YP_001487478.1 157693016 5621519 2263383..2264327 1 NC_009848.1 catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2264327 ispH 5621519 ispH Bacillus pumilus SAFR-032 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_001487478.1 2263383 D 315750 CDS YP_001487479.1 157693017 5621520 complement(2264366..2265487) 1 NC_009848.1 hypothetical protein 2265487 yqfO 5621520 yqfO Bacillus pumilus SAFR-032 hypothetical protein YP_001487479.1 2264366 R 315750 CDS YP_001487480.1 157693018 5621521 complement(2265480..2266196) 1 NC_009848.1 possible S-adenosylmethionine (SAM)-dependent methyltransferase; hypothetical protein 2266196 yqfN 5621521 yqfN Bacillus pumilus SAFR-032 hypothetical protein YP_001487480.1 2265480 R 315750 CDS YP_001487481.1 157693019 5621522 complement(2266307..2266594) 1 NC_009848.1 cytochrome c550 2266594 cccA 5621522 cccA Bacillus pumilus SAFR-032 cytochrome c550 YP_001487481.1 2266307 R 315750 CDS YP_001487482.1 157693020 5621523 complement(2266970..2268091) 1 NC_009848.1 sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD 2268091 sigA 5621523 sigA Bacillus pumilus SAFR-032 RNA polymerase sigma factor RpoD YP_001487482.1 2266970 R 315750 CDS YP_001487483.1 157693021 5621524 complement(2268293..2270122) 1 NC_009848.1 synthesizes RNA primers at the replication forks; DNA primase 2270122 dnaG 5621524 dnaG Bacillus pumilus SAFR-032 DNA primase YP_001487483.1 2268293 R 315750 CDS YP_001487484.1 157693022 5621525 complement(2270156..2270656) 1 NC_009848.1 YqfM; hypothetical protein 2270656 yqxD 5621525 yqxD Bacillus pumilus SAFR-032 hypothetical protein YP_001487484.1 2270156 R 315750 CDS YP_001487485.1 157693023 5621526 complement(2270918..2271739) 1 NC_009848.1 hypothetical protein 2271739 yqfL 5621526 yqfL Bacillus pumilus SAFR-032 hypothetical protein YP_001487485.1 2270918 R 315750 CDS YP_001487486.1 157693024 5621527 complement(2271765..2272502) 1 NC_009848.1 possible CBS domain protein; transcriptional regulator 2272502 yqzB 5621527 yqzB Bacillus pumilus SAFR-032 transcriptional regulator YP_001487486.1 2271765 R 315750 CDS YP_001487487.1 157693025 5621528 complement(2272570..2274615) 1 NC_009848.1 glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 2274615 glyS 5621528 glyS Bacillus pumilus SAFR-032 glycyl-tRNA synthetase subunit beta YP_001487487.1 2272570 R 315750 CDS YP_001487488.1 157693026 5621529 complement(2274608..2275495) 1 NC_009848.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 2275495 glyQ 5621529 glyQ Bacillus pumilus SAFR-032 glycyl-tRNA synthetase subunit alpha YP_001487488.1 2274608 R 315750 CDS YP_001487489.1 157693027 5621530 complement(2275825..2276595) 1 NC_009848.1 involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 2276595 recO 5621530 recO Bacillus pumilus SAFR-032 DNA repair protein RecO YP_001487489.1 2275825 R 315750 CDS YP_001487490.1 157693028 5621531 complement(2276631..2276774) 1 NC_009848.1 hypothetical protein 2276774 5621531 BPUM_2261 Bacillus pumilus SAFR-032 hypothetical protein YP_001487490.1 2276631 R 315750 CDS YP_001487491.1 157693029 5621532 complement(2276924..2277829) 1 NC_009848.1 Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 2277829 era 5621532 era Bacillus pumilus SAFR-032 GTP-binding protein Era YP_001487491.1 2276924 R 315750 CDS YP_001487492.1 157693030 5621533 complement(2277822..2278220) 1 NC_009848.1 cytidine deaminase 2278220 cdd 5621533 cdd Bacillus pumilus SAFR-032 cytidine deaminase YP_001487492.1 2277822 R 315750 CDS YP_001487493.1 157693031 5621534 complement(2278698..2279177) 1 NC_009848.1 putative metalloprotease 2279177 yqfG 5621534 yqfG Bacillus pumilus SAFR-032 putative metalloprotease YP_001487493.1 2278698 R 315750 CDS YP_001487494.1 157693032 5621535 complement(2279178..2281370) 1 NC_009848.1 possible metal-dependent phosphohydrolase; HD family hydrolase 2281370 yqfF 5621535 yqfF Bacillus pumilus SAFR-032 HD family hydrolase YP_001487494.1 2279178 R 315750 CDS YP_001487495.1 157693033 5621536 complement(2281404..2282363) 1 NC_009848.1 YqfE; phosphate starvation-induced protein 2282363 phoH2 5621536 phoH2 Bacillus pumilus SAFR-032 phosphate starvation-induced protein YP_001487495.1 2281404 R 315750 CDS YP_001487496.1 157693034 5621537 complement(2282367..2283557) 1 NC_009848.1 stage IV sporulation protein 2283557 yqfD 5621537 yqfD Bacillus pumilus SAFR-032 stage IV sporulation protein YP_001487496.1 2282367 R 315750 CDS YP_001487497.1 157693035 5621538 complement(2283576..2283857) 1 NC_009848.1 sporulation protein YqfC 2283857 yqfC 5621538 yqfC Bacillus pumilus SAFR-032 sporulation protein YqfC YP_001487497.1 2283576 R 315750 CDS YP_001487498.1 157693036 5621539 complement(2284074..2285123) 1 NC_009848.1 hypothetical protein 2285123 5621539 BPUM_2269 Bacillus pumilus SAFR-032 hypothetical protein YP_001487498.1 2284074 R 315750 CDS YP_001487499.1 157693037 5621540 complement(2285180..2285653) 1 NC_009848.1 hypothetical protein 2285653 yqfB 5621540 yqfB Bacillus pumilus SAFR-032 hypothetical protein YP_001487499.1 2285180 R 315750 CDS YP_001487500.1 157693038 5621541 complement(2285685..2286677) 1 NC_009848.1 hypothetical protein 2286677 yqfA 5621541 yqfA Bacillus pumilus SAFR-032 hypothetical protein YP_001487500.1 2285685 R 315750 CDS YP_001487501.1 157693039 5621542 complement(2286705..2288018) 1 NC_009848.1 possible membrane-bound ClpP family serine protease; serine peptidase 2288018 yqeZ 5621542 yqeZ Bacillus pumilus SAFR-032 serine peptidase YP_001487501.1 2286705 R 315750 CDS YP_001487502.1 157693040 5621543 complement(2288160..2288609) 1 NC_009848.1 hypothetical protein 2288609 yqeY 5621543 yqeY Bacillus pumilus SAFR-032 hypothetical protein YP_001487502.1 2288160 R 315750 CDS YP_001487503.1 157693041 5621544 complement(2288624..2288797) 1 NC_009848.1 a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 2288797 rpsU 5621544 rpsU Bacillus pumilus SAFR-032 30S ribosomal protein S21 YP_001487503.1 2288624 R 315750 CDS YP_001487504.1 157693042 5621545 2288980..2289909 1 NC_009848.1 PnaS family phosphate:sodium (Na+) symporter 2289909 yqeW 5621545 yqeW Bacillus pumilus SAFR-032 PnaS family phosphate:sodium (Na+) symporter YP_001487504.1 2288980 D 315750 CDS YP_001487505.1 157693043 5621546 complement(2289950..2291311) 1 NC_009848.1 YqeV; 2-methylthioadenine synthetase 2291311 miaB 5621546 miaB Bacillus pumilus SAFR-032 2-methylthioadenine synthetase YP_001487505.1 2289950 R 315750 CDS YP_001487506.1 157693044 5621547 complement(2291308..2292078) 1 NC_009848.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 2292078 yqeU 5621547 yqeU Bacillus pumilus SAFR-032 16S ribosomal RNA methyltransferase RsmE YP_001487506.1 2291308 R 315750 CDS YP_001487507.1 157693045 5621548 complement(2292102..2293037) 1 NC_009848.1 methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase 2293037 prmA 5621548 prmA Bacillus pumilus SAFR-032 50S ribosomal protein L11 methyltransferase YP_001487507.1 2292102 R 315750 CDS YP_001487508.1 157693046 5621549 complement(2293060..2294193) 1 NC_009848.1 chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 2294193 dnaJ 5621549 dnaJ Bacillus pumilus SAFR-032 chaperone protein DnaJ YP_001487508.1 2293060 R 315750 CDS YP_001487509.1 157693047 5621550 complement(2294359..2296200) 1 NC_009848.1 heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 2296200 dnaK 5621550 dnaK Bacillus pumilus SAFR-032 molecular chaperone DnaK YP_001487509.1 2294359 R 315750 CDS YP_001487510.1 157693048 5621551 complement(2296225..2296782) 1 NC_009848.1 with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 2296782 grpE 5621551 grpE Bacillus pumilus SAFR-032 heat shock protein GrpE YP_001487510.1 2296225 R 315750 CDS YP_001487511.1 157693049 5621552 complement(2296846..2297877) 1 NC_009848.1 Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 2297877 hrcA 5621552 hrcA Bacillus pumilus SAFR-032 heat-inducible transcription repressor YP_001487511.1 2296846 R 315750 CDS YP_001487512.1 157693050 5621553 complement(2297959..2299098) 1 NC_009848.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2299098 hemN 5621553 hemN Bacillus pumilus SAFR-032 coproporphyrinogen III oxidase YP_001487512.1 2297959 R 315750 CDS YP_001487513.1 157693051 5621554 complement(2299216..2301054) 1 NC_009848.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 2301054 lepA 5621554 lepA Bacillus pumilus SAFR-032 GTP-binding protein LepA YP_001487513.1 2299216 R 315750 CDS YP_001487514.1 157693052 5621555 complement(2301186..2301518) 1 NC_009848.1 YqxA; hypothetical protein 2301518 yqeP 5621555 yqeP Bacillus pumilus SAFR-032 hypothetical protein YP_001487514.1 2301186 R 315750 CDS YP_001487515.1 157693053 5621556 complement(2301533..2302741) 1 NC_009848.1 stage II sporulation protein P 2302741 spoIIP 5621556 spoIIP Bacillus pumilus SAFR-032 stage II sporulation protein P YP_001487515.1 2301533 R 315750 CDS YP_001487516.1 157693054 5621557 complement(2302808..2303923) 1 NC_009848.1 Initiates the rapid degradation of small, acid-soluble proteins during spore germination; germination protease 2303923 gpr 5621557 gpr Bacillus pumilus SAFR-032 germination protease YP_001487516.1 2302808 R 315750 CDS YP_001487517.1 157693055 5621558 2304122..2304388 1 NC_009848.1 binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 2304388 rpsT 5621558 rpsT Bacillus pumilus SAFR-032 30S ribosomal protein S20 YP_001487517.1 2304122 D 315750 CDS YP_001487518.1 157693056 5621559 complement(2304524..2305543) 1 NC_009848.1 required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 2305543 holA 5621559 holA Bacillus pumilus SAFR-032 DNA polymerase III subunit delta YP_001487518.1 2304524 R 315750 CDS YP_001487519.1 157693057 5621560 2305780..2305914 1 NC_009848.1 hypothetical protein 2305914 5621560 BPUM_2290 Bacillus pumilus SAFR-032 hypothetical protein YP_001487519.1 2305780 D 315750 CDS YP_001487520.1 157693058 5621561 complement(2305954..2308281) 1 NC_009848.1 possible integral membrane protein; competence protein EC 2308281 comEC 5621561 comEC Bacillus pumilus SAFR-032 competence protein EC YP_001487520.1 2305954 R 315750 CDS YP_001487521.1 157693059 5621562 complement(2308274..2308843) 1 NC_009848.1 competence protein EB; dCMP deaminase 2308843 comEB 5621562 comEB Bacillus pumilus SAFR-032 dCMP deaminase YP_001487521.1 2308274 R 315750 CDS YP_001487522.1 157693060 5621563 complement(2308909..2309538) 1 NC_009848.1 competence protein EA 2309538 comEA 5621563 comEA Bacillus pumilus SAFR-032 competence protein EA YP_001487522.1 2308909 R 315750 CDS YP_001487523.1 157693061 5621564 2309629..2310477 1 NC_009848.1 may be involved in regulation of competence genes; late competence protein ComER 2310477 comER 5621564 comER Bacillus pumilus SAFR-032 late competence protein ComER YP_001487523.1 2309629 D 315750 CDS YP_001487524.1 157693062 5621565 complement(2310525..2311268) 1 NC_009848.1 UbiE; SAM dependent methyltransferase 2311268 yqeM 5621565 yqeM Bacillus pumilus SAFR-032 SAM dependent methyltransferase YP_001487524.1 2310525 R 315750 CDS YP_001487525.1 157693063 5621566 complement(2311265..2311621) 1 NC_009848.1 hypothetical protein 2311621 5621566 BPUM_2296 Bacillus pumilus SAFR-032 hypothetical protein YP_001487525.1 2311265 R 315750 CDS YP_001487526.1 157693064 5621567 complement(2311634..2312197) 1 NC_009848.1 hypothetical protein 2312197 yqeK 5621567 yqeK Bacillus pumilus SAFR-032 hypothetical protein YP_001487526.1 2311634 R 315750 CDS YP_001487527.1 157693065 5621568 complement(2312187..2312756) 1 NC_009848.1 transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase 2312756 nadD 5621568 nadD Bacillus pumilus SAFR-032 nicotinic acid mononucleotide adenylyltransferase YP_001487527.1 2312187 R 315750 CDS YP_001487528.1 157693066 5621569 complement(2312770..2313060) 1 NC_009848.1 RNA binding protein 2313060 yqeI 5621569 yqeI Bacillus pumilus SAFR-032 RNA binding protein YP_001487528.1 2312770 R 315750 CDS YP_001487529.1 157693067 5621570 complement(2313054..2313896) 1 NC_009848.1 AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 2313896 aroE 5621570 aroE Bacillus pumilus SAFR-032 shikimate 5-dehydrogenase YP_001487529.1 2313054 R 315750 CDS YP_001487530.1 157693068 5621571 complement(2313918..2315018) 1 NC_009848.1 in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH 2315018 yqeH 5621571 yqeH Bacillus pumilus SAFR-032 GTP-binding protein YqeH YP_001487530.1 2313918 R 315750 CDS YP_001487531.1 157693069 5621572 complement(2315021..2315371) 1 NC_009848.1 HAD family phosphatase 2315371 yqeG 5621572 yqeG Bacillus pumilus SAFR-032 HAD family phosphatase YP_001487531.1 2315021 R 315750 CDS YP_001487532.1 157693070 5621573 2315490..2315642 1 NC_009848.1 hypothetical protein 2315642 5621573 BPUM_2303 Bacillus pumilus SAFR-032 hypothetical protein YP_001487532.1 2315490 D 315750 CDS YP_001487533.1 157693071 5621574 2315905..2316045 1 NC_009848.1 sporulation inhibitor Sda 2316045 sda 5621574 sda Bacillus pumilus SAFR-032 sporulation inhibitor Sda YP_001487533.1 2315905 D 315750 CDS YP_001487534.1 157693072 5621575 complement(2316181..2316330) 1 NC_009848.1 hypothetical protein 2316330 5621575 BPUM_2305 Bacillus pumilus SAFR-032 hypothetical protein YP_001487534.1 2316181 R 315750 CDS YP_001487535.1 157693073 5621576 complement(2316409..2317137) 1 NC_009848.1 lipoprotein 2317137 yqeF 5621576 yqeF Bacillus pumilus SAFR-032 lipoprotein YP_001487535.1 2316409 R 315750 CDS YP_001487536.1 157693074 5621577 complement(2317220..2317981) 1 NC_009848.1 polysaccharide deacetylase 2317981 5621577 BPUM_2307 Bacillus pumilus SAFR-032 polysaccharide deacetylase YP_001487536.1 2317220 R 315750 CDS YP_001487537.1 157693075 5621578 complement(2318137..2319348) 1 NC_009848.1 aspartate phosphatase response regulator 2319348 rapA4 5621578 rapA4 Bacillus pumilus SAFR-032 aspartate phosphatase response regulator YP_001487537.1 2318137 R 315750 CDS YP_001487538.1 157693076 5621579 2319349..2320218 1 NC_009848.1 sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment; sporulation sigma factor SigK 2320218 spoIIIC 5621579 spoIIIC Bacillus pumilus SAFR-032 sporulation sigma factor SigK YP_001487538.1 2319349 D 315750 CDS YP_001487539.1 157693077 5621580 2320335..2321690 1 NC_009848.1 transposase 2321690 5621580 BPUM_2310 Bacillus pumilus SAFR-032 transposase YP_001487539.1 2320335 D 315750 CDS YP_001487540.1 157693078 5621581 complement(2321873..2322388) 1 NC_009848.1 hypothetical protein 2322388 5621581 BPUM_2312 Bacillus pumilus SAFR-032 hypothetical protein YP_001487540.1 2321873 R 315750 CDS YP_001487541.1 157693079 5621582 2322788..2322991 1 NC_009848.1 hypothetical protein 2322991 5621582 BPUM_2313 Bacillus pumilus SAFR-032 hypothetical protein YP_001487541.1 2322788 D 315750 CDS YP_001487542.1 157693080 5621583 2323091..2323750 1 NC_009848.1 lipoprotein 2323750 5621583 BPUM_2314 Bacillus pumilus SAFR-032 lipoprotein YP_001487542.1 2323091 D 315750 CDS YP_001487543.1 157693081 5621585 complement(2324275..2324526) 1 NC_009848.1 hypothetical protein 2324526 5621585 BPUM_2316 Bacillus pumilus SAFR-032 hypothetical protein YP_001487543.1 2324275 R 315750 CDS YP_001487544.1 157693082 5621586 complement(2324581..2324997) 1 NC_009848.1 hypothetical protein 2324997 5621586 BPUM_2317 Bacillus pumilus SAFR-032 hypothetical protein YP_001487544.1 2324581 R 315750 CDS YP_001487545.1 157693083 5621588 complement(2325786..2325977) 1 NC_009848.1 hypothetical protein 2325977 5621588 BPUM_2319 Bacillus pumilus SAFR-032 hypothetical protein YP_001487545.1 2325786 R 315750 CDS YP_001487546.1 157693084 5621589 complement(2326084..2327487) 1 NC_009848.1 polysaccharide deacetylase 2327487 yjeA 5621589 yjeA Bacillus pumilus SAFR-032 polysaccharide deacetylase YP_001487546.1 2326084 R 315750 CDS YP_001487547.1 157693085 5621590 complement(2327656..2328210) 1 NC_009848.1 hypothetical protein 2328210 5621590 BPUM_2321 Bacillus pumilus SAFR-032 hypothetical protein YP_001487547.1 2327656 R 315750 CDS YP_001487548.1 157693086 5621591 complement(2328227..2328643) 1 NC_009848.1 GNAT family acetyltransferase 2328643 5621591 BPUM_2322 Bacillus pumilus SAFR-032 GNAT family acetyltransferase YP_001487548.1 2328227 R 315750 CDS YP_001487549.1 157693087 5621592 complement(2328847..2329134) 1 NC_009848.1 hypothetical protein 2329134 5621592 BPUM_2323 Bacillus pumilus SAFR-032 hypothetical protein YP_001487549.1 2328847 R 315750 CDS YP_001487550.1 157693088 5621593 2329281..2329565 1 NC_009848.1 hypothetical protein 2329565 5621593 BPUM_2324 Bacillus pumilus SAFR-032 hypothetical protein YP_001487550.1 2329281 D 315750 CDS YP_001487551.1 157693089 5621594 complement(2329545..2329733) 1 NC_009848.1 hypothetical protein 2329733 5621594 BPUM_2325 Bacillus pumilus SAFR-032 hypothetical protein YP_001487551.1 2329545 R 315750 CDS YP_001487552.1 157693090 5621595 complement(2329807..2331147) 1 NC_009848.1 major facilitator superfamily transporter 2331147 5621595 BPUM_2326 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001487552.1 2329807 R 315750 CDS YP_001487553.1 157693091 5621596 complement(2331229..2332650) 1 NC_009848.1 catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase 2332650 araA 5621596 araA Bacillus pumilus SAFR-032 L-arabinose isomerase YP_001487553.1 2331229 R 315750 CDS YP_001487554.1 157693092 5621597 complement(2332668..2333372) 1 NC_009848.1 catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 2333372 araD 5621597 araD Bacillus pumilus SAFR-032 L-ribulose-5-phosphate 4-epimerase YP_001487554.1 2332668 R 315750 CDS YP_001487555.1 157693093 5621598 complement(2333366..2334991) 1 NC_009848.1 xylulokinase 2334991 5621598 BPUM_2329 Bacillus pumilus SAFR-032 xylulokinase YP_001487555.1 2333366 R 315750 CDS YP_001487556.1 157693094 5621599 2335265..2336365 1 NC_009848.1 transcriptional regulator 2336365 5621599 BPUM_2330 Bacillus pumilus SAFR-032 transcriptional regulator YP_001487556.1 2335265 D 315750 CDS YP_001487557.1 157693095 5621600 complement(2336613..2337338) 1 NC_009848.1 protein disulfide-isomerase 2337338 5621600 BPUM_2331 Bacillus pumilus SAFR-032 protein disulfide-isomerase YP_001487557.1 2336613 R 315750 CDS YP_001487558.1 157693096 5621601 complement(2337480..2338037) 1 NC_009848.1 3-hexulose-6-phosphate isomerase 2338037 hxlB 5621601 hxlB Bacillus pumilus SAFR-032 3-hexulose-6-phosphate isomerase YP_001487558.1 2337480 R 315750 CDS YP_001487559.1 157693097 5621602 complement(2338034..2338666) 1 NC_009848.1 3-hexulose-6-phosphate synthase 2338666 hxlA 5621602 hxlA Bacillus pumilus SAFR-032 3-hexulose-6-phosphate synthase YP_001487559.1 2338034 R 315750 CDS YP_001487560.1 157693098 5621603 complement(2338917..2339273) 1 NC_009848.1 transcriptional regulator 2339273 hxlR 5621603 hxlR Bacillus pumilus SAFR-032 transcriptional regulator YP_001487560.1 2338917 R 315750 CDS YP_001487561.1 157693099 5621604 complement(2339350..2340219) 1 NC_009848.1 possible lipase/esterase; peptidase 2340219 5621604 BPUM_2335 Bacillus pumilus SAFR-032 peptidase YP_001487561.1 2339350 R 315750 CDS YP_001487562.1 157693100 5621605 complement(2340466..2340813) 1 NC_009848.1 hypothetical protein 2340813 yxiJ 5621605 yxiJ Bacillus pumilus SAFR-032 hypothetical protein YP_001487562.1 2340466 R 315750 CDS YP_001487563.1 157693101 5621606 complement(2340984..2341154) 1 NC_009848.1 hypothetical protein 2341154 5621606 BPUM_2337 Bacillus pumilus SAFR-032 hypothetical protein YP_001487563.1 2340984 R 315750 CDS YP_001487564.1 157693102 5621607 complement(2341348..2342001) 1 NC_009848.1 hypothetical protein 2342001 5621607 BPUM_2338 Bacillus pumilus SAFR-032 hypothetical protein YP_001487564.1 2341348 R 315750 CDS YP_001487565.1 157693103 5621608 complement(2342031..2349053) 1 NC_009848.1 cell wall-associated protein 2349053 wapA 5621608 wapA Bacillus pumilus SAFR-032 cell wall-associated protein YP_001487565.1 2342031 R 315750 CDS YP_001487566.1 157693104 5621609 complement(2349222..2350097) 1 NC_009848.1 penicillin binding protein transpeptidase; beta-lactamase 2350097 5621609 BPUM_2340 Bacillus pumilus SAFR-032 beta-lactamase YP_001487566.1 2349222 R 315750 CDS YP_001487567.1 157693105 5621610 complement(2350137..2351300) 1 NC_009848.1 acyl-CoA dehydrogenase 2351300 ydbM 5621610 ydbM Bacillus pumilus SAFR-032 acyl-CoA dehydrogenase YP_001487567.1 2350137 R 315750 CDS YP_001487568.1 157693106 5621611 2351421..2352209 1 NC_009848.1 amino acid ABC transporter ATP-binding protein 2352209 5621611 BPUM_2342 Bacillus pumilus SAFR-032 amino acid ABC transporter ATP-binding protein YP_001487568.1 2351421 D 315750 CDS YP_001487569.1 157693107 5621612 2352206..2353066 1 NC_009848.1 amino acid ABC transporter ATP-binding protein 2353066 5621612 BPUM_2343 Bacillus pumilus SAFR-032 amino acid ABC transporter ATP-binding protein YP_001487569.1 2352206 D 315750 CDS YP_001487570.1 157693108 5621613 2353063..2353761 1 NC_009848.1 amino acid ABC transporter ATP-binding protein 2353761 5621613 BPUM_2344 Bacillus pumilus SAFR-032 amino acid ABC transporter ATP-binding protein YP_001487570.1 2353063 D 315750 CDS YP_001487571.1 157693109 5621614 2353774..2354487 1 NC_009848.1 amino acid ABC transporter ATP-binding protein 2354487 5621614 BPUM_2345 Bacillus pumilus SAFR-032 amino acid ABC transporter ATP-binding protein YP_001487571.1 2353774 D 315750 CDS YP_001487572.1 157693110 5621615 complement(2354524..2355354) 1 NC_009848.1 sporulation related manganese (Mn) catalase 2355354 yjqC 5621615 yjqC Bacillus pumilus SAFR-032 sporulation related manganese (Mn) catalase YP_001487572.1 2354524 R 315750 CDS YP_001487573.1 157693111 5621616 complement(2355483..2356523) 1 NC_009848.1 zinc (Zn) alcohol dehydrogenase 2356523 ydjL 5621616 ydjL Bacillus pumilus SAFR-032 zinc (Zn) alcohol dehydrogenase YP_001487573.1 2355483 R 315750 CDS YP_001487574.1 157693112 5621617 complement(2356595..2357815) 1 NC_009848.1 major facilitator superfamily transporter 2357815 5621617 BPUM_2348 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001487574.1 2356595 R 315750 CDS YP_001487575.1 157693113 5621618 complement(2358188..2358937) 1 NC_009848.1 short chain dehydrogenase/reductase 2358937 5621618 BPUM_2349 Bacillus pumilus SAFR-032 short chain dehydrogenase/reductase YP_001487575.1 2358188 R 315750 CDS YP_001487576.1 157693114 5621619 complement(2359067..2360230) 1 NC_009848.1 class IV alcohol dehydrogenase, iron-containing alcohol dehydrogenase, GbsB EutG; 1,3-propanediol dehydrogenase 2360230 dhaT 5621619 dhaT Bacillus pumilus SAFR-032 1,3-propanediol dehydrogenase YP_001487576.1 2359067 R 315750 CDS YP_001487577.1 157693115 5621620 complement(2360227..2361678) 1 NC_009848.1 AGCS family alanine or glycine:sodium (Na+) or proton (H+) symporter 2361678 5621620 BPUM_2351 Bacillus pumilus SAFR-032 AGCS family alanine or glycine:sodium (Na+) or proton (H+) symporter YP_001487577.1 2360227 R 315750 CDS YP_001487578.1 157693116 5621621 2361818..2362711 1 NC_009848.1 LysR family transcriptional regulator 2362711 ywqM 5621621 ywqM Bacillus pumilus SAFR-032 LysR family transcriptional regulator YP_001487578.1 2361818 D 315750 CDS YP_001487579.1 157693117 5621622 complement(2363168..2364886) 1 NC_009848.1 multidrug ABC transporter ATP-binding protein 2364886 5621622 BPUM_2353 Bacillus pumilus SAFR-032 multidrug ABC transporter ATP-binding protein YP_001487579.1 2363168 R 315750 CDS YP_001487580.1 157693118 5621623 complement(2364886..2365449) 1 NC_009848.1 YrkN; hypothetical protein 2365449 5621623 BPUM_2354 Bacillus pumilus SAFR-032 hypothetical protein YP_001487580.1 2364886 R 315750 CDS YP_001487581.1 157693119 5621624 complement(2366166..2367380) 1 NC_009848.1 zinc (Zn) alcohol dehydrogenase 2367380 yycR 5621624 yycR Bacillus pumilus SAFR-032 zinc (Zn) alcohol dehydrogenase YP_001487581.1 2366166 R 315750 CDS YP_001487582.1 157693120 5621625 complement(2367801..2368403) 1 NC_009848.1 methyltransferase 2368403 yrhH 5621625 yrhH Bacillus pumilus SAFR-032 methyltransferase YP_001487582.1 2367801 R 315750 CDS YP_001487583.1 157693121 5621626 2368671..2368796 1 NC_009848.1 hypothetical protein 2368796 5621626 BPUM_2357 Bacillus pumilus SAFR-032 hypothetical protein YP_001487583.1 2368671 D 315750 CDS YP_001487584.1 157693122 5621627 complement(2369162..2369296) 1 NC_009848.1 hypothetical protein 2369296 yrzI 5621627 yrzI Bacillus pumilus SAFR-032 hypothetical protein YP_001487584.1 2369162 R 315750 CDS YP_001487585.1 157693123 5621628 complement(2369743..2369982) 1 NC_009848.1 hypothetical protein 2369982 yrhC 5621628 yrhC Bacillus pumilus SAFR-032 hypothetical protein YP_001487585.1 2369743 R 315750 CDS YP_001487586.1 157693124 5621629 complement(2370046..2371194) 1 NC_009848.1 catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 2371194 yrhB 5621629 yrhB Bacillus pumilus SAFR-032 cystathionine beta-lyase YP_001487586.1 2370046 R 315750 CDS YP_001487587.1 157693125 5621630 complement(2371196..2372119) 1 NC_009848.1 cysteine synthase 2372119 yrhA 5621630 yrhA Bacillus pumilus SAFR-032 cysteine synthase YP_001487587.1 2371196 R 315750 CDS YP_001487588.1 157693126 5621631 complement(2372166..2372861) 1 NC_009848.1 enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2372861 mtnN 5621631 mtnN Bacillus pumilus SAFR-032 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase YP_001487588.1 2372166 R 315750 CDS YP_001487589.1 157693127 5621632 complement(2372877..2373518) 1 NC_009848.1 S-adenosylmethionine(SAM)-dependent methyltransferase 2373518 yrrT 5621632 yrrT Bacillus pumilus SAFR-032 S-adenosylmethionine(SAM)-dependent methyltransferase YP_001487589.1 2372877 R 315750 CDS YP_001487590.1 157693128 5621633 2373675..2373908 1 NC_009848.1 hypothetical protein 2373908 yrzA 5621633 yrzA Bacillus pumilus SAFR-032 hypothetical protein YP_001487590.1 2373675 D 315750 CDS YP_001487591.1 157693129 5621634 complement(2373944..2374609) 1 NC_009848.1 hypothetical protein 2374609 yrrS 5621634 yrrS Bacillus pumilus SAFR-032 hypothetical protein YP_001487591.1 2373944 R 315750 CDS YP_001487592.1 157693130 5621635 complement(2374677..2376419) 1 NC_009848.1 penicillin-binding protein 2376419 5621635 BPUM_2366 Bacillus pumilus SAFR-032 penicillin-binding protein YP_001487592.1 2374677 R 315750 CDS YP_001487593.1 157693131 5621636 complement(2376470..2376943) 1 NC_009848.1 necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 2376943 greA 5621636 greA Bacillus pumilus SAFR-032 transcription elongation factor GreA YP_001487593.1 2376470 R 315750 CDS YP_001487594.1 157693132 5621637 2377652..2379007 1 NC_009848.1 transposase 2379007 5621637 BPUM_2368 Bacillus pumilus SAFR-032 transposase YP_001487594.1 2377652 D 315750 CDS YP_001487595.1 157693133 5621638 complement(2379124..2379756) 1 NC_009848.1 functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 2379756 udk 5621638 udk Bacillus pumilus SAFR-032 uridine kinase YP_001487595.1 2379124 R 315750 CDS YP_001487596.1 157693134 5621639 complement(2379764..2381032) 1 NC_009848.1 U32 family peptidase 2381032 yrrO 5621639 yrrO Bacillus pumilus SAFR-032 U32 family peptidase YP_001487596.1 2379764 R 315750 CDS YP_001487597.1 157693135 5621640 complement(2381053..2381982) 1 NC_009848.1 U32 family peptidase 2381982 yrrN 5621640 yrrN Bacillus pumilus SAFR-032 U32 family peptidase YP_001487597.1 2381053 R 315750 CDS YP_001487598.1 157693136 5621641 complement(2381979..2382644) 1 NC_009848.1 O-methyltransferase 2382644 yrrM 5621641 yrrM Bacillus pumilus SAFR-032 O-methyltransferase YP_001487598.1 2381979 R 315750 CDS YP_001487599.1 157693137 5621642 complement(2382855..2383937) 1 NC_009848.1 aminodeoxychorismate lyase 2383937 yrrL 5621642 yrrL Bacillus pumilus SAFR-032 aminodeoxychorismate lyase YP_001487599.1 2382855 R 315750 CDS YP_001487600.1 157693138 5621643 complement(2384011..2385099) 1 NC_009848.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2385099 yhfS 5621643 yhfS Bacillus pumilus SAFR-032 acetyl-CoA acetyltransferase YP_001487600.1 2384011 R 315750 CDS YP_001487601.1 157693139 5621644 complement(2385087..2386550) 1 NC_009848.1 activates fatty acids by binding to coenzyme A; acyl-CoA synthetase 2386550 yhfT 5621644 yhfT Bacillus pumilus SAFR-032 acyl-CoA synthetase YP_001487601.1 2385087 R 315750 CDS YP_001487602.1 157693140 5621645 complement(2386547..2387113) 1 NC_009848.1 BioY family protein; hypothetical protein 2387113 yhfU 5621645 yhfU Bacillus pumilus SAFR-032 hypothetical protein YP_001487602.1 2386547 R 315750 CDS YP_001487603.1 157693141 5621646 complement(2387268..2387555) 1 NC_009848.1 hypothetical protein 2387555 yrzB 5621646 yrzB Bacillus pumilus SAFR-032 hypothetical protein YP_001487603.1 2387268 R 315750 CDS YP_001487604.1 157693142 5621647 complement(2387572..2387988) 1 NC_009848.1 similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein 2387988 yrrK 5621647 yrrK Bacillus pumilus SAFR-032 Holliday junction resolvase-like protein YP_001487604.1 2387572 R 315750 CDS YP_001487605.1 157693143 5621648 complement(2387992..2388270) 1 NC_009848.1 hypothetical protein 2388270 yrzL 5621648 yrzL Bacillus pumilus SAFR-032 hypothetical protein YP_001487605.1 2387992 R 315750 CDS YP_001487606.1 157693144 5621649 complement(2388349..2390985) 1 NC_009848.1 Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 2390985 alaS 5621649 alaS Bacillus pumilus SAFR-032 alanyl-tRNA synthetase YP_001487606.1 2388349 R 315750 CDS YP_001487607.1 157693145 5621650 complement(2391322..2392386) 1 NC_009848.1 possible permease; hypothetical protein 2392386 yrrI 5621650 yrrI Bacillus pumilus SAFR-032 hypothetical protein YP_001487607.1 2391322 R 315750 CDS YP_001487608.1 157693146 5621651 2392552..2393280 1 NC_009848.1 glutamine ABC transporter ATP-binding protein 2393280 glnQ1 5621651 glnQ1 Bacillus pumilus SAFR-032 glutamine ABC transporter ATP-binding protein YP_001487608.1 2392552 D 315750 CDS YP_001487609.1 157693147 5621652 2393294..2394103 1 NC_009848.1 glutamine ABC transporter binding protein 2394103 glnH 5621652 glnH Bacillus pumilus SAFR-032 glutamine ABC transporter binding protein YP_001487609.1 2393294 D 315750 CDS YP_001487610.1 157693148 5621653 2394171..2394824 1 NC_009848.1 glutamine ABC transporter membrane protein 2394824 glnM 5621653 glnM Bacillus pumilus SAFR-032 glutamine ABC transporter membrane protein YP_001487610.1 2394171 D 315750 CDS YP_001487611.1 157693149 5621654 2394840..2395490 1 NC_009848.1 glutamine ABC transporter membrane protein 2395490 glnP 5621654 glnP Bacillus pumilus SAFR-032 glutamine ABC transporter membrane protein YP_001487611.1 2394840 D 315750 CDS YP_001487612.1 157693150 5621655 complement(2395724..2395855) 1 NC_009848.1 hypothetical protein 2395855 5621655 BPUM_2386 Bacillus pumilus SAFR-032 hypothetical protein YP_001487612.1 2395724 R 315750 CDS YP_001487613.1 157693151 5621656 complement(2395876..2396067) 1 NC_009848.1 hypothetical protein 2396067 5621656 BPUM_2387 Bacillus pumilus SAFR-032 hypothetical protein YP_001487613.1 2395876 R 315750 CDS YP_001487614.1 157693152 5621657 complement(2396081..2396599) 1 NC_009848.1 hypothetical protein 2396599 yrrD 5621657 yrrD Bacillus pumilus SAFR-032 hypothetical protein YP_001487614.1 2396081 R 315750 CDS YP_001487615.1 157693153 5621658 complement(2396675..2399059) 1 NC_009848.1 YrrC; exodeoxyribonuclease V subunit alpha 2399059 recD 5621658 recD Bacillus pumilus SAFR-032 exodeoxyribonuclease V subunit alpha YP_001487615.1 2396675 R 315750 CDS YP_001487616.1 157693154 5621659 complement(2399079..2399732) 1 NC_009848.1 hypothetical protein 2399732 yrrB 5621659 yrrB Bacillus pumilus SAFR-032 hypothetical protein YP_001487616.1 2399079 R 315750 CDS YP_001487617.1 157693155 5621660 complement(2399793..2400911) 1 NC_009848.1 catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2400911 mnmA 5621660 mnmA Bacillus pumilus SAFR-032 tRNA-specific 2-thiouridylase MnmA YP_001487617.1 2399793 R 315750 CDS YP_001487618.1 157693156 5621661 complement(2401007..2402149) 1 NC_009848.1 bifunctional protein cysteine desulfurase/selenocysteine lyase 2402149 yrvO 5621661 yrvO Bacillus pumilus SAFR-032 bifunctional protein cysteine desulfurase/selenocysteine lyase YP_001487618.1 2401007 R 315750 CDS YP_001487619.1 157693157 5621662 complement(2402168..2402587) 1 NC_009848.1 transcriptional regulator 2402587 yrzC 5621662 yrzC Bacillus pumilus SAFR-032 transcriptional regulator YP_001487619.1 2402168 R 315750 CDS YP_001487620.1 157693158 5621663 2402797..2404062 1 NC_009848.1 recombination factor protein RarA 2404062 yrvN 5621663 yrvN Bacillus pumilus SAFR-032 recombination factor protein RarA YP_001487620.1 2402797 D 315750 CDS YP_001487621.1 157693159 5621664 complement(2404292..2405056) 1 NC_009848.1 ThiF/MoeB/HesA family protein 2405056 yrvM 5621664 yrvM Bacillus pumilus SAFR-032 ThiF/MoeB/HesA family protein YP_001487621.1 2404292 R 315750 CDS YP_001487622.1 157693160 5621665 complement(2405407..2407191) 1 NC_009848.1 catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 2407191 aspS 5621665 aspS Bacillus pumilus SAFR-032 aspartyl-tRNA synthetase YP_001487622.1 2405407 R 315750 CDS YP_004777017.1 342675149 5621666 complement(2407361..2408500) 1 NC_009848.1 histidyl-tRNA synthetase 2408500 hisS 5621666 hisS Bacillus pumilus SAFR-032 histidyl-tRNA synthetase YP_004777017.1 2407361 R 315750 CDS YP_001487623.1 157693161 5621667 complement(2408851..2409021) 1 NC_009848.1 hypothetical protein 2409021 5621667 BPUM_2398 Bacillus pumilus SAFR-032 hypothetical protein YP_001487623.1 2408851 R 315750 CDS YP_001487624.1 157693162 5621668 2409231..2410739 1 NC_009848.1 YrvJ; N-acetylmuramoyl-L-alanine amidase 2410739 blyA 5621668 blyA Bacillus pumilus SAFR-032 N-acetylmuramoyl-L-alanine amidase YP_001487624.1 2409231 D 315750 CDS YP_001487625.1 157693163 5621669 complement(2410836..2411279) 1 NC_009848.1 D-tyrosyl-tRNA deacylase 2411279 5621669 BPUM_2400 Bacillus pumilus SAFR-032 D-tyrosyl-tRNA deacylase YP_001487625.1 2410836 R 315750 CDS YP_001487626.1 157693164 5621670 complement(2411298..2413508) 1 NC_009848.1 GTP diphosphokinase 2413508 relA 5621670 relA Bacillus pumilus SAFR-032 GTP diphosphokinase YP_001487626.1 2411298 R 315750 CDS YP_001487627.1 157693165 5621671 complement(2413651..2414163) 1 NC_009848.1 catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 2414163 apt 5621671 apt Bacillus pumilus SAFR-032 adenine phosphoribosyltransferase YP_001487627.1 2413651 R 315750 CDS YP_001487628.1 157693166 5621672 complement(2414187..2416511) 1 NC_009848.1 yrvE; recombination protein J 2416511 recJ 5621672 recJ Bacillus pumilus SAFR-032 recombination protein J YP_001487628.1 2414187 R 315750 CDS YP_001487629.1 157693167 5621673 complement(2416593..2416946) 1 NC_009848.1 hypothetical protein 2416946 yrvD 5621673 yrvD Bacillus pumilus SAFR-032 hypothetical protein YP_001487629.1 2416593 R 315750 CDS YP_001487630.1 157693168 5621675 complement(2417472..2419700) 1 NC_009848.1 part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF 2419700 secDF 5621675 secDF Bacillus pumilus SAFR-032 bifunctional preprotein translocase subunit SecD/SecF YP_001487630.1 2417472 R 315750 CDS YP_001487631.1 157693169 5621676 complement(2419742..2420038) 1 NC_009848.1 hypothetical protein 2420038 yrzD 5621676 yrzD Bacillus pumilus SAFR-032 hypothetical protein YP_001487631.1 2419742 R 315750 CDS YP_001487632.1 157693170 5621677 2420142..2421704 1 NC_009848.1 stage V sporulation protein B 2421704 spoVB 5621677 spoVB Bacillus pumilus SAFR-032 stage V sporulation protein B YP_001487632.1 2420142 D 315750 CDS YP_001487633.1 157693171 5621678 complement(2421706..2422368) 1 NC_009848.1 hypothetical protein 2422368 yrbG 5621678 yrbG Bacillus pumilus SAFR-032 hypothetical protein YP_001487633.1 2421706 R 315750 CDS YP_001487634.1 157693172 5621679 2422534..2422911 1 NC_009848.1 hypothetical protein 2422911 yrzE 5621679 yrzE Bacillus pumilus SAFR-032 hypothetical protein YP_001487634.1 2422534 D 315750 CDS YP_001487635.1 157693173 5621680 complement(2422963..2423229) 1 NC_009848.1 member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 2423229 yajC 5621680 yajC Bacillus pumilus SAFR-032 preprotein translocase subunit YajC YP_001487635.1 2422963 R 315750 CDS YP_001487636.1 157693174 5621681 complement(2423277..2424422) 1 NC_009848.1 Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 2424422 tgt 5621681 tgt Bacillus pumilus SAFR-032 queuine tRNA-ribosyltransferase YP_001487636.1 2423277 R 315750 CDS YP_001487637.1 157693175 5621682 complement(2424453..2425481) 1 NC_009848.1 Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 2425481 queA 5621682 queA Bacillus pumilus SAFR-032 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_001487637.1 2424453 R 315750 CDS YP_001487638.1 157693176 5621683 complement(2425516..2425716) 1 NC_009848.1 hypothetical protein 2425716 5621683 BPUM_2414 Bacillus pumilus SAFR-032 hypothetical protein YP_001487638.1 2425516 R 315750 CDS YP_001487639.1 157693177 5621684 complement(2425709..2426713) 1 NC_009848.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2426713 ruvB 5621684 ruvB Bacillus pumilus SAFR-032 Holliday junction DNA helicase RuvB YP_001487639.1 2425709 R 315750 CDS YP_001487640.1 157693178 5621685 complement(2426725..2427330) 1 NC_009848.1 plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2427330 ruvA 5621685 ruvA Bacillus pumilus SAFR-032 Holliday junction DNA helicase RuvA YP_001487640.1 2426725 R 315750 CDS YP_001487641.1 157693179 5621686 complement(2427479..2427991) 1 NC_009848.1 forespore regulator of the sigma-K checkpoint; bypass-of-forespore protein C 2427991 bofC 5621686 bofC Bacillus pumilus SAFR-032 bypass-of-forespore protein C YP_001487641.1 2427479 R 315750 CDS YP_001487642.1 157693180 5621687 2428217..2428861 1 NC_009848.1 hypothetical protein 2428861 yrzF 5621687 yrzF Bacillus pumilus SAFR-032 hypothetical protein YP_001487642.1 2428217 D 315750 CDS YP_001487643.1 157693181 5621688 complement(2429092..2429295) 1 NC_009848.1 hypothetical protein 2429295 5621688 BPUM_2419 Bacillus pumilus SAFR-032 hypothetical protein YP_001487643.1 2429092 R 315750 CDS YP_001487644.1 157693182 5621689 2429472..2429618 1 NC_009848.1 hypothetical protein 2429618 5621689 BPUM_2420 Bacillus pumilus SAFR-032 hypothetical protein YP_001487644.1 2429472 D 315750 CDS YP_001487645.1 157693183 5621690 complement(2429642..2431399) 1 NC_009848.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2431399 thiC 5621690 thiC Bacillus pumilus SAFR-032 thiamine biosynthesis protein ThiC YP_001487645.1 2429642 R 315750 CDS YP_001487646.1 157693184 5621691 2431874..2432506 1 NC_009848.1 homoserine/threonine resistance transporter 2432506 5621691 BPUM_2422 Bacillus pumilus SAFR-032 homoserine/threonine resistance transporter YP_001487646.1 2431874 D 315750 CDS YP_001487647.1 157693185 5621692 complement(2432555..2433232) 1 NC_009848.1 spore cortex protein CoxA 2433232 coxA 5621692 coxA Bacillus pumilus SAFR-032 spore cortex protein CoxA YP_001487647.1 2432555 R 315750 CDS YP_001487648.1 157693186 5621693 complement(2433306..2434550) 1 NC_009848.1 spore coat assembly protein YrbA; SpoVID-associated morphogenetic protein 2434550 safA 5621693 safA Bacillus pumilus SAFR-032 SpoVID-associated morphogenetic protein YP_001487648.1 2433306 R 315750 CDS YP_001487649.1 157693187 5621694 complement(2434682..2435791) 1 NC_009848.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 2435791 nadA 5621694 nadA Bacillus pumilus SAFR-032 quinolinate synthetase YP_001487649.1 2434682 R 315750 CDS YP_001487650.1 157693188 5621695 complement(2435778..2436641) 1 NC_009848.1 catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 2436641 nadC 5621695 nadC Bacillus pumilus SAFR-032 nicotinate-nucleotide pyrophosphorylase YP_001487650.1 2435778 R 315750 CDS YP_001487651.1 157693189 5621696 complement(2436623..2438197) 1 NC_009848.1 catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase 2438197 nadB 5621696 nadB Bacillus pumilus SAFR-032 L-aspartate oxidase YP_001487651.1 2436623 R 315750 CDS YP_001487652.1 157693190 5621698 2439434..2439976 1 NC_009848.1 hypothetical protein 2439976 yrxA 5621698 yrxA Bacillus pumilus SAFR-032 hypothetical protein YP_001487652.1 2439434 D 315750 CDS YP_001487653.1 157693191 5621699 complement(2440203..2441081) 1 NC_009848.1 catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; prephenate dehydratase 2441081 pheA 5621699 pheA Bacillus pumilus SAFR-032 prephenate dehydratase YP_001487653.1 2440203 R 315750 CDS YP_001487654.1 157693192 5621700 complement(2441100..2441543) 1 NC_009848.1 hypothetical protein 2441543 pheB 5621700 pheB Bacillus pumilus SAFR-032 hypothetical protein YP_001487654.1 2441100 R 315750 CDS YP_001487655.1 157693193 5621701 complement(2441599..2442885) 1 NC_009848.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 2442885 obgE 5621701 obgE Bacillus pumilus SAFR-032 GTPase ObgE YP_001487655.1 2441599 R 315750 CDS YP_001487656.1 157693194 5621702 complement(2442916..2443500) 1 NC_009848.1 stage 0 sporulation initiation phosphotransferase B 2443500 spo0B 5621702 spo0B Bacillus pumilus SAFR-032 stage 0 sporulation initiation phosphotransferase B YP_001487656.1 2442916 R 315750 CDS YP_001487657.1 157693195 5621703 complement(2443756..2444040) 1 NC_009848.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 2444040 rpmA 5621703 rpmA Bacillus pumilus SAFR-032 50S ribosomal protein L27 YP_001487657.1 2443756 R 315750 CDS YP_001487658.1 157693196 5621704 complement(2444053..2444334) 1 NC_009848.1 hypothetical protein 2444334 ysxB 5621704 ysxB Bacillus pumilus SAFR-032 hypothetical protein YP_001487658.1 2444053 R 315750 CDS YP_001487659.1 157693197 5621705 complement(2444406..2444714) 1 NC_009848.1 50S ribosomal protein L21 2444714 rplU 5621705 rplU Bacillus pumilus SAFR-032 50S ribosomal protein L21 YP_001487659.1 2444406 R 315750 CDS YP_001487660.1 157693198 5621706 complement(2444866..2445735) 1 NC_009848.1 stage IV sporulation M50 family membrane metalloprotease FB 2445735 spoIVFB 5621706 spoIVFB Bacillus pumilus SAFR-032 stage IV sporulation M50 family membrane metalloprotease FB YP_001487660.1 2444866 R 315750 CDS YP_001487661.1 157693199 5621707 complement(2445728..2446519) 1 NC_009848.1 inhibitor of stage IV sporulation protein FB; stage IV sporulation protein FA 2446519 spoIVFA 5621707 spoIVFA Bacillus pumilus SAFR-032 stage IV sporulation protein FA YP_001487661.1 2445728 R 315750 CDS YP_001487662.1 157693200 5621708 complement(2446632..2447435) 1 NC_009848.1 ATPase activator of MinC; septum site determining protein 2447435 minD 5621708 minD Bacillus pumilus SAFR-032 septum site determining protein YP_001487662.1 2446632 R 315750 CDS YP_001487663.1 157693201 5621709 complement(2447438..2448121) 1 NC_009848.1 blocks the formation of polar Z-ring septums; septum formation inhibitor 2448121 minC 5621709 minC Bacillus pumilus SAFR-032 septum formation inhibitor YP_001487663.1 2447438 R 315750 CDS YP_001487664.1 157693202 5621710 complement(2448176..2448694) 1 NC_009848.1 cell-shape determining protein 2448694 mreD 5621710 mreD Bacillus pumilus SAFR-032 cell-shape determining protein YP_001487664.1 2448176 R 315750 CDS YP_001487665.1 157693203 5621711 complement(2448691..2449590) 1 NC_009848.1 in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 2449590 mreC 5621711 mreC Bacillus pumilus SAFR-032 rod shape-determining protein MreC YP_001487665.1 2448691 R 315750 CDS YP_001487666.1 157693204 5621712 complement(2449618..2450637) 1 NC_009848.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 2450637 mreB 5621712 mreB Bacillus pumilus SAFR-032 rod shape-determining protein MreB YP_001487666.1 2449618 R 315750 CDS YP_001487667.1 157693205 5621713 complement(2450728..2451426) 1 NC_009848.1 Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 2451426 radC 5621713 radC Bacillus pumilus SAFR-032 DNA repair protein RadC YP_001487667.1 2450728 R 315750 CDS YP_001487668.1 157693206 5621714 complement(2451451..2452020) 1 NC_009848.1 Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein 2452020 maf 5621714 maf Bacillus pumilus SAFR-032 Maf-like protein YP_001487668.1 2451451 R 315750 CDS YP_001487669.1 157693207 5621715 complement(2452198..2453211) 1 NC_009848.1 stage II sporulation protein B 2453211 spoIIB 5621715 spoIIB Bacillus pumilus SAFR-032 stage II sporulation protein B YP_001487669.1 2452198 R 315750 CDS YP_001487670.1 157693208 5621716 complement(2453386..2454105) 1 NC_009848.1 ComC protein; A24 unassigned peptidase family protein 2454105 5621716 BPUM_2447 Bacillus pumilus SAFR-032 A24 unassigned peptidase family protein YP_001487670.1 2453386 R 315750 CDS YP_001487671.1 157693209 5621717 complement(2454253..2455557) 1 NC_009848.1 tetrahydrofolate synthase 2455557 folC 5621717 folC Bacillus pumilus SAFR-032 tetrahydrofolate synthase YP_001487671.1 2454253 R 315750 CDS YP_001487672.1 157693210 5621718 complement(2455623..2458265) 1 NC_009848.1 valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 2458265 valS 5621718 valS Bacillus pumilus SAFR-032 valyl-tRNA synthetase YP_001487672.1 2455623 R 315750 CDS YP_001487673.1 157693211 5621719 2458723..2458911 1 NC_009848.1 hypothetical protein 2458911 5621719 BPUM_2450 Bacillus pumilus SAFR-032 hypothetical protein YP_001487673.1 2458723 D 315750 CDS YP_001487674.1 157693212 5621720 complement(2458958..2459989) 1 NC_009848.1 hypothetical protein 2459989 ysxE 5621720 ysxE Bacillus pumilus SAFR-032 hypothetical protein YP_001487674.1 2458958 R 315750 CDS YP_001487675.1 157693213 5621721 complement(2460027..2461304) 1 NC_009848.1 stage VI sporulation protein D; spore coat assembly protein SpoVID 2461304 spoVID 5621721 spoVID Bacillus pumilus SAFR-032 spore coat assembly protein SpoVID YP_001487675.1 2460027 R 315750 CDS YP_001487676.1 157693214 5621722 complement(2461627..2462919) 1 NC_009848.1 Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 2462919 hemL 5621722 hemL Bacillus pumilus SAFR-032 glutamate-1-semialdehyde aminotransferase YP_001487676.1 2461627 R 315750 CDS YP_001487677.1 157693215 5621723 complement(2462947..2463918) 1 NC_009848.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 2463918 hemB 5621723 hemB Bacillus pumilus SAFR-032 delta-aminolevulinic acid dehydratase YP_001487677.1 2462947 R 315750 CDS YP_001487678.1 157693216 5621724 complement(2463915..2464706) 1 NC_009848.1 uroporphyrinogen III synthase 2464706 hemD 5621724 hemD Bacillus pumilus SAFR-032 uroporphyrinogen III synthase YP_001487678.1 2463915 R 315750 CDS YP_001487679.1 157693217 5621725 complement(2464703..2465638) 1 NC_009848.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 2465638 hemC 5621725 hemC Bacillus pumilus SAFR-032 porphobilinogen deaminase YP_001487679.1 2464703 R 315750 CDS YP_001487680.1 157693218 5621726 complement(2465680..2466510) 1 NC_009848.1 cytochrome C biogenesis protein 2466510 hemX 5621726 hemX Bacillus pumilus SAFR-032 cytochrome C biogenesis protein YP_001487680.1 2465680 R 315750 CDS YP_001487681.1 157693219 5621727 complement(2466518..2467885) 1 NC_009848.1 catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 2467885 hemA 5621727 hemA Bacillus pumilus SAFR-032 glutamyl-tRNA reductase YP_001487681.1 2466518 R 315750 CDS YP_001487682.1 157693220 5621728 2468128..2468613 1 NC_009848.1 hypothetical protein 2468613 ysxD 5621728 ysxD Bacillus pumilus SAFR-032 hypothetical protein YP_001487682.1 2468128 D 315750 CDS YP_001487683.1 157693221 5621729 complement(2468657..2469244) 1 NC_009848.1 binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 2469244 engB 5621729 engB Bacillus pumilus SAFR-032 ribosome biogenesis GTP-binding protein YsxC YP_001487683.1 2468657 R 315750 CDS YP_001487684.1 157693222 5621730 complement(2469241..2471565) 1 NC_009848.1 class III heat-shock ATP-dependent Lon protease 2471565 lonA 5621730 lonA Bacillus pumilus SAFR-032 class III heat-shock ATP-dependent Lon protease YP_001487684.1 2469241 R 315750 CDS YP_001487685.1 157693223 5621731 complement(2471737..2473398) 1 NC_009848.1 ATP-dependent protease 2473398 lonB 5621731 lonB Bacillus pumilus SAFR-032 ATP-dependent protease YP_001487685.1 2471737 R 315750 CDS YP_001487686.1 157693224 5621732 complement(2473535..2474800) 1 NC_009848.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 2474800 clpX 5621732 clpX Bacillus pumilus SAFR-032 ATP-dependent protease ATP-binding subunit ClpX YP_001487686.1 2473535 R 315750 CDS YP_001487687.1 157693225 5621733 complement(2475052..2476326) 1 NC_009848.1 Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 2476326 tig 5621733 tig Bacillus pumilus SAFR-032 trigger factor YP_001487687.1 2475052 R 315750 CDS YP_001487688.1 157693226 5621734 complement(2476566..2477573) 1 NC_009848.1 hypothetical protein 2477573 ysoA 5621734 ysoA Bacillus pumilus SAFR-032 hypothetical protein YP_001487688.1 2476566 R 315750 CDS YP_001487689.1 157693227 5621735 complement(2477699..2478298) 1 NC_009848.1 catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 2478298 leuD 5621735 leuD Bacillus pumilus SAFR-032 isopropylmalate isomerase small subunit YP_001487689.1 2477699 R 315750 CDS YP_001487690.1 157693228 5621736 complement(2478312..2479727) 1 NC_009848.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 2479727 leuC 5621736 leuC Bacillus pumilus SAFR-032 isopropylmalate isomerase large subunit YP_001487690.1 2478312 R 315750 CDS YP_001487691.1 157693229 5621737 complement(2479768..2480865) 1 NC_009848.1 catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 2480865 leuB 5621737 leuB Bacillus pumilus SAFR-032 3-isopropylmalate dehydrogenase YP_001487691.1 2479768 R 315750 CDS YP_001487692.1 157693230 5621738 complement(2480884..2482437) 1 NC_009848.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 2482437 leuA 5621738 leuA Bacillus pumilus SAFR-032 2-isopropylmalate synthase YP_001487692.1 2480884 R 315750 CDS YP_001487693.1 157693231 5621739 complement(2482424..2483452) 1 NC_009848.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2483452 ilvC 5621739 ilvC Bacillus pumilus SAFR-032 ketol-acid reductoisomerase YP_001487693.1 2482424 R 315750 CDS YP_001487694.1 157693232 5621740 complement(2483471..2483989) 1 NC_009848.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 2483989 ilvH 5621740 ilvH Bacillus pumilus SAFR-032 acetolactate synthase 3 regulatory subunit YP_001487694.1 2483471 R 315750 CDS YP_001487695.1 157693233 5621741 complement(2483986..2485710) 1 NC_009848.1 catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase catalytic subunit 2485710 ilvB 5621741 ilvB Bacillus pumilus SAFR-032 acetolactate synthase catalytic subunit YP_001487695.1 2483986 R 315750 CDS YP_001487696.1 157693234 5621742 complement(2486088..2487002) 1 NC_009848.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 2487002 5621742 BPUM_2473 Bacillus pumilus SAFR-032 branched-chain amino acid aminotransferase YP_001487696.1 2486088 R 315750 CDS YP_001487697.1 157693235 5621743 2487437..2488480 1 NC_009848.1 6-phosphogluconolactonase 2488480 5621743 BPUM_2474 Bacillus pumilus SAFR-032 6-phosphogluconolactonase YP_001487697.1 2487437 D 315750 CDS YP_001487698.1 157693236 5621744 complement(2488711..2489130) 1 NC_009848.1 hypothetical protein 2489130 5621744 BPUM_2475 Bacillus pumilus SAFR-032 hypothetical protein YP_001487698.1 2488711 R 315750 CDS YP_001487699.1 157693237 5621745 complement(2489226..2490392) 1 NC_009848.1 D-alanine esterification of lipoteichoic acid and wall teichoic protein; D-alanine esterase DltD 2490392 dltD 5621745 dltD Bacillus pumilus SAFR-032 D-alanine esterase DltD YP_001487699.1 2489226 R 315750 CDS YP_001487700.1 157693238 5621746 complement(2490392..2490628) 1 NC_009848.1 D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 2 2490628 dltC 5621746 dltC Bacillus pumilus SAFR-032 D-alanine--poly(phosphoribitol) ligase subunit 2 YP_001487700.1 2490392 R 315750 CDS YP_001487701.1 157693239 5621747 complement(2490650..2491834) 1 NC_009848.1 D-alanine esterification of lipoteichoic acid and wall teichoic protein; D-alanine esterase DltB 2491834 dltB 5621747 dltB Bacillus pumilus SAFR-032 D-alanine esterase DltB YP_001487701.1 2490650 R 315750 CDS YP_001487702.1 157693240 5621748 complement(2491831..2493336) 1 NC_009848.1 transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 1 2493336 dltA 5621748 dltA Bacillus pumilus SAFR-032 D-alanine--poly(phosphoribitol) ligase subunit 1 YP_001487702.1 2491831 R 315750 CDS YP_001487703.1 157693241 5621749 complement(2493351..2493494) 1 NC_009848.1 D-Ala-teichoic acid biosynthesis protein 2493494 5621749 BPUM_2480 Bacillus pumilus SAFR-032 D-Ala-teichoic acid biosynthesis protein YP_001487703.1 2493351 R 315750 CDS YP_001487704.1 157693242 5621750 2493834..2494229 1 NC_009848.1 glyoxalase 2494229 5621750 BPUM_2481 Bacillus pumilus SAFR-032 glyoxalase YP_001487704.1 2493834 D 315750 CDS YP_001487705.1 157693243 5621751 complement(2494460..2494639) 1 NC_009848.1 hypothetical protein 2494639 5621751 BPUM_2482 Bacillus pumilus SAFR-032 hypothetical protein YP_001487705.1 2494460 R 315750 CDS YP_001487706.1 157693244 5621752 2494814..2495002 1 NC_009848.1 hypothetical protein 2495002 5621752 BPUM_2483 Bacillus pumilus SAFR-032 hypothetical protein YP_001487706.1 2494814 D 315750 CDS YP_001487707.1 157693245 5621753 2495174..2496715 1 NC_009848.1 transposase 2496715 5621753 BPUM_2484 Bacillus pumilus SAFR-032 transposase YP_001487707.1 2495174 D 315750 CDS YP_001487708.1 157693246 5621754 2496741..2497076 1 NC_009848.1 hypothetical protein 2497076 5621754 BPUM_2485 Bacillus pumilus SAFR-032 hypothetical protein YP_001487708.1 2496741 D 315750 CDS YP_001487709.1 157693247 5621756 2497413..2497610 1 NC_009848.1 hypothetical protein 2497610 5621756 BPUM_2487 Bacillus pumilus SAFR-032 hypothetical protein YP_001487709.1 2497413 D 315750 CDS YP_001487710.1 157693248 5621757 2497974..2498954 1 NC_009848.1 short-chain alcohol dehydrogenase; dehydrogenase 2498954 5621757 BPUM_2488 Bacillus pumilus SAFR-032 dehydrogenase YP_001487710.1 2497974 D 315750 CDS YP_001487711.1 157693249 5621759 complement(2499582..2500106) 1 NC_009848.1 phosphoesterase 2500106 ysnB 5621759 ysnB Bacillus pumilus SAFR-032 phosphoesterase YP_001487711.1 2499582 R 315750 CDS YP_001487712.1 157693250 5621760 complement(2500121..2500714) 1 NC_009848.1 hydrolyzes non-standard nucleotides such as xanthine and inosine; nucleoside-triphosphatase 2500714 ysnA 5621760 ysnA Bacillus pumilus SAFR-032 nucleoside-triphosphatase YP_001487712.1 2500121 R 315750 CDS YP_001487713.1 157693251 5621761 complement(2500734..2501462) 1 NC_009848.1 RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 2501462 rph 5621761 rph Bacillus pumilus SAFR-032 ribonuclease PH YP_001487713.1 2500734 R 315750 CDS YP_001487714.1 157693252 5621762 complement(2501614..2502675) 1 NC_009848.1 spore germination protein M 2502675 gerM 5621762 gerM Bacillus pumilus SAFR-032 spore germination protein M YP_001487714.1 2501614 R 315750 CDS YP_001487715.1 157693253 5621763 complement(2502777..2503595) 1 NC_009848.1 converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 2503595 racE 5621763 racE Bacillus pumilus SAFR-032 glutamate racemase YP_001487715.1 2502777 R 315750 CDS YP_001487716.1 157693254 5621764 complement(2503603..2504043) 1 NC_009848.1 MarR family transcriptional regulator 2504043 ysmB 5621764 ysmB Bacillus pumilus SAFR-032 MarR family transcriptional regulator YP_001487716.1 2503603 R 315750 CDS YP_001487717.1 157693255 5621765 complement(2504192..2504416) 1 NC_009848.1 transcriptional regulator of spore coat genes; spore germination protein E 2504416 gerE 5621765 gerE Bacillus pumilus SAFR-032 spore germination protein E YP_001487717.1 2504192 R 315750 CDS YP_001487718.1 157693256 5621766 complement(2504622..2505938) 1 NC_009848.1 YraO; CitMHS family citrate-magnesium (Mg2+):proton (H+) citrate-calcium (Ca2+): proton (H+) symporter 2505938 5621766 BPUM_2496 Bacillus pumilus SAFR-032 CitMHS family citrate-magnesium (Mg2+):proton (H+) citrate-calcium (Ca2+): proton (H+) symporter YP_001487718.1 2504622 R 315750 CDS YP_001487719.1 157693257 5621767 complement(2506091..2506951) 1 NC_009848.1 LysR family transcriptional regulator 2506951 yraN 5621767 yraN Bacillus pumilus SAFR-032 LysR family transcriptional regulator YP_001487719.1 2506091 R 315750 CDS YP_001487720.1 157693258 5621768 2507087..2508217 1 NC_009848.1 DUF485/possible polyaromatic hydrocarbon fluorene degradation protein; hypothetical protein 2508217 yraM 5621768 yraM Bacillus pumilus SAFR-032 hypothetical protein YP_001487720.1 2507087 D 315750 CDS YP_001487721.1 157693259 5621769 complement(2508245..2508964) 1 NC_009848.1 biotin-(acetyl-CoA carboxylase) ligase 2508964 5621769 BPUM_2499 Bacillus pumilus SAFR-032 biotin-(acetyl-CoA carboxylase) ligase YP_001487721.1 2508245 R 315750 CDS YP_001487722.1 157693260 5621770 complement(2509043..2509504) 1 NC_009848.1 possible 4-hydroxybenzoyl-CoA thioesterase; thioesterase 2509504 ysmA 5621770 ysmA Bacillus pumilus SAFR-032 thioesterase YP_001487722.1 2509043 R 315750 CDS YP_001487723.1 157693261 5621771 complement(2509625..2510389) 1 NC_009848.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 2510389 sdhB 5621771 sdhB Bacillus pumilus SAFR-032 succinate dehydrogenase iron-sulfur subunit YP_001487723.1 2509625 R 315750 CDS YP_001487724.1 157693262 5621772 complement(2510391..2512151) 1 NC_009848.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 2512151 sdhA 5621772 sdhA Bacillus pumilus SAFR-032 succinate dehydrogenase flavoprotein subunit YP_001487724.1 2510391 R 315750 CDS YP_001487725.1 157693263 5621773 complement(2512189..2512797) 1 NC_009848.1 succinate dehydrogenase cytochrome b558 subunit 2512797 sdhC 5621773 sdhC Bacillus pumilus SAFR-032 succinate dehydrogenase cytochrome b558 subunit YP_001487725.1 2512189 R 315750 CDS YP_001487726.1 157693264 5621774 2513078..2513521 1 NC_009848.1 hypothetical protein 2513521 yslB 5621774 yslB Bacillus pumilus SAFR-032 hypothetical protein YP_001487726.1 2513078 D 315750 CDS YP_001487727.1 157693265 5621775 complement(2513689..2514918) 1 NC_009848.1 catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 2514918 lysC 5621775 lysC Bacillus pumilus SAFR-032 aspartate kinase YP_001487727.1 2513689 R 315750 CDS YP_001487728.1 157693266 5621776 complement(2515300..2517072) 1 NC_009848.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 2517072 uvrC 5621776 uvrC Bacillus pumilus SAFR-032 excinuclease ABC subunit C YP_001487728.1 2515300 R 315750 CDS YP_001487729.1 157693267 5621777 complement(2517212..2517526) 1 NC_009848.1 thioredoxin 2517526 trxA 5621777 trxA Bacillus pumilus SAFR-032 thioredoxin YP_001487729.1 2517212 R 315750 CDS YP_001487730.1 157693268 5621778 complement(2517772..2519250) 1 NC_009848.1 alpha-N-arabinofuranosidase 2519250 abfA 5621778 abfA Bacillus pumilus SAFR-032 alpha-N-arabinofuranosidase YP_001487730.1 2517772 R 315750 CDS YP_001487731.1 157693269 5621779 complement(2519326..2520303) 1 NC_009848.1 electron transfer flavoprotein subunit alpha 2520303 etfA 5621779 etfA Bacillus pumilus SAFR-032 electron transfer flavoprotein subunit alpha YP_001487731.1 2519326 R 315750 CDS YP_001487732.1 157693270 5621780 complement(2520348..2521121) 1 NC_009848.1 electron transfer flavoprotein subunit beta 2521121 etfB 5621780 etfB Bacillus pumilus SAFR-032 electron transfer flavoprotein subunit beta YP_001487732.1 2520348 R 315750 CDS YP_001487733.1 157693271 5621781 complement(2521152..2521931) 1 NC_009848.1 Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 2521931 ysiB 5621781 ysiB Bacillus pumilus SAFR-032 enoyl-CoA hydratase YP_001487733.1 2521152 R 315750 CDS YP_001487734.1 157693272 5621782 complement(2521958..2522542) 1 NC_009848.1 transcriptional regulator 2522542 ysiA 5621782 ysiA Bacillus pumilus SAFR-032 transcriptional regulator YP_001487734.1 2521958 R 315750 CDS YP_001487735.1 157693273 5621783 complement(2522708..2524429) 1 NC_009848.1 long-chain-fatty-acid--CoA ligase 2524429 lcfA2 5621783 lcfA2 Bacillus pumilus SAFR-032 long-chain-fatty-acid--CoA ligase YP_001487735.1 2522708 R 315750 CDS YP_001487736.1 157693274 5621784 complement(2524531..2524986) 1 NC_009848.1 hypothetical protein 2524986 5621784 BPUM_2514 Bacillus pumilus SAFR-032 hypothetical protein YP_001487736.1 2524531 R 315750 CDS YP_001487737.1 157693275 5621785 complement(2525150..2525554) 1 NC_009848.1 hypothetical protein 2525554 yshE 5621785 yshE Bacillus pumilus SAFR-032 hypothetical protein YP_001487737.1 2525150 R 315750 CDS YP_001487738.1 157693276 5621786 complement(2525569..2527929) 1 NC_009848.1 MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein 2527929 mutS2 5621786 mutS2 Bacillus pumilus SAFR-032 recombination and DNA strand exchange inhibitor protein YP_001487738.1 2525569 R 315750 CDS YP_001487739.1 157693277 5621787 complement(2527948..2529660) 1 NC_009848.1 hypothetical protein 2529660 yshC 5621787 yshC Bacillus pumilus SAFR-032 hypothetical protein YP_001487739.1 2527948 R 315750 CDS YP_001487740.1 157693278 5621788 complement(2529775..2530308) 1 NC_009848.1 possible Colicin V production protein; hypothetical protein 2530308 yshB 5621788 yshB Bacillus pumilus SAFR-032 hypothetical protein YP_001487740.1 2529775 R 315750 CDS YP_001487741.1 157693279 5621789 complement(2530316..2530573) 1 NC_009848.1 cell division protein ZapA 2530573 yshA 5621789 yshA Bacillus pumilus SAFR-032 cell division protein ZapA YP_001487741.1 2530316 R 315750 CDS YP_001487742.1 157693280 5621790 2530708..2531631 1 NC_009848.1 An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII 2531631 rnhC 5621790 rnhC Bacillus pumilus SAFR-032 ribonuclease HIII YP_001487742.1 2530708 D 315750 CDS YP_001487743.1 157693281 5621791 complement(2531670..2534084) 1 NC_009848.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 2534084 pheT 5621791 pheT Bacillus pumilus SAFR-032 phenylalanyl-tRNA synthetase subunit beta YP_001487743.1 2531670 R 315750 CDS YP_001487744.1 157693282 5621792 complement(2534100..2535134) 1 NC_009848.1 catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 2535134 pheS 5621792 pheS Bacillus pumilus SAFR-032 phenylalanyl-tRNA synthetase subunit alpha YP_001487744.1 2534100 R 315750 CDS YP_001487745.1 157693283 5621793 complement(2535511..2536254) 1 NC_009848.1 SpoU rRNA methylase family 2536254 ysgA 5621793 ysgA Bacillus pumilus SAFR-032 SpoU rRNA methylase family YP_001487745.1 2535511 R 315750 CDS YP_001487746.1 157693284 5621794 2536368..2536589 1 NC_009848.1 small acid-soluble spore protein SspI 2536589 sspI 5621794 sspI Bacillus pumilus SAFR-032 small acid-soluble spore protein SspI YP_001487746.1 2536368 D 315750 CDS YP_001487747.1 157693285 5621795 complement(2536631..2538427) 1 NC_009848.1 carbon starvation-induced protein 2538427 cstA 5621795 cstA Bacillus pumilus SAFR-032 carbon starvation-induced protein YP_001487747.1 2536631 R 315750 CDS YP_001487748.1 157693286 5621796 complement(2538457..2538612) 1 NC_009848.1 hypothetical protein 2538612 5621796 BPUM_2526 Bacillus pumilus SAFR-032 hypothetical protein YP_001487748.1 2538457 R 315750 CDS YP_001487749.1 157693287 5621797 complement(2538779..2539867) 1 NC_009848.1 M42 family glutamyl aminopeptidase 2539867 ysdC 5621797 ysdC Bacillus pumilus SAFR-032 M42 family glutamyl aminopeptidase YP_001487749.1 2538779 R 315750 CDS YP_001487750.1 157693288 5621798 2540047..2540451 1 NC_009848.1 hypothetical protein 2540451 ysdB 5621798 ysdB Bacillus pumilus SAFR-032 hypothetical protein YP_001487750.1 2540047 D 315750 CDS YP_001487751.1 157693289 5621799 complement(2540469..2540732) 1 NC_009848.1 hypothetical protein 2540732 ysdA 5621799 ysdA Bacillus pumilus SAFR-032 hypothetical protein YP_001487751.1 2540469 R 315750 CDS YP_001487752.1 157693290 5621800 complement(2540796..2541155) 1 NC_009848.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2541155 rplT 5621800 rplT Bacillus pumilus SAFR-032 50S ribosomal protein L20 YP_001487752.1 2540796 R 315750 CDS YP_001487753.1 157693291 5621801 complement(2541187..2541387) 1 NC_009848.1 50S ribosomal protein L35 2541387 rpmI 5621801 rpmI Bacillus pumilus SAFR-032 50S ribosomal protein L35 YP_001487753.1 2541187 R 315750 CDS YP_001487754.1 157693292 5621803 complement(2542260..2542955) 1 NC_009848.1 in conjunction with LrgA this protein inhibits the expression or activity of extracellular murein hydrolases; antiholin-like protein LrgB 2542955 ysbB 5621803 ysbB Bacillus pumilus SAFR-032 antiholin-like protein LrgB YP_001487754.1 2542260 R 315750 CDS YP_001487755.1 157693293 5621804 complement(2542970..2543413) 1 NC_009848.1 negatively regulates murein hydrolase activity; murein hydrolase regulator LrgA 2543413 ysbA 5621804 ysbA Bacillus pumilus SAFR-032 murein hydrolase regulator LrgA YP_001487755.1 2542970 R 315750 CDS YP_001487756.1 157693294 5621805 complement(2543550..2544287) 1 NC_009848.1 response regulator 2544287 lytT 5621805 lytT Bacillus pumilus SAFR-032 response regulator YP_001487756.1 2543550 R 315750 CDS YP_001487757.1 157693295 5621806 complement(2544284..2546041) 1 NC_009848.1 sensor histidine kinase 2546041 lytS 5621806 lytS Bacillus pumilus SAFR-032 sensor histidine kinase YP_001487757.1 2544284 R 315750 CDS YP_001487758.1 157693296 5621807 2546217..2546996 1 NC_009848.1 HAD family phosphatase 2546996 ysaA 5621807 ysaA Bacillus pumilus SAFR-032 HAD family phosphatase YP_001487758.1 2546217 D 315750 CDS YP_001487759.1 157693297 5621808 complement(2547055..2547984) 1 NC_009848.1 methyl-accepting chemotaxis protein 2547984 5621808 BPUM_2538 Bacillus pumilus SAFR-032 methyl-accepting chemotaxis protein YP_001487759.1 2547055 R 315750 CDS YP_001487760.1 157693298 5621809 complement(2548144..2550084) 1 NC_009848.1 catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2550084 thrS 5621809 thrS Bacillus pumilus SAFR-032 threonyl-tRNA synthetase YP_001487760.1 2548144 R 315750 CDS YP_001487761.1 157693299 5621810 complement(2550421..2551290) 1 NC_009848.1 hypothetical protein 2551290 ytxC 5621810 ytxC Bacillus pumilus SAFR-032 hypothetical protein YP_001487761.1 2550421 R 315750 CDS YP_001487762.1 157693300 5621811 complement(2551351..2551989) 1 NC_009848.1 hypothetical protein 2551989 ytxB 5621811 ytxB Bacillus pumilus SAFR-032 hypothetical protein YP_001487762.1 2551351 R 315750 CDS YP_001487763.1 157693301 5621812 complement(2552023..2552952) 1 NC_009848.1 Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI 2552952 dnaI 5621812 dnaI Bacillus pumilus SAFR-032 primosomal protein DnaI YP_001487763.1 2552023 R 315750 CDS YP_001487764.1 157693302 5621813 complement(2552970..2554394) 1 NC_009848.1 replication initiation and membrane attachment protein; replicative DNA helicase 2554394 dnaB 5621813 dnaB Bacillus pumilus SAFR-032 replicative DNA helicase YP_001487764.1 2552970 R 315750 CDS YP_001487765.1 157693303 5621815 complement(2554959..2555345) 1 NC_009848.1 hypothetical protein 2555345 5621815 BPUM_2545 Bacillus pumilus SAFR-032 hypothetical protein YP_001487765.1 2554959 R 315750 CDS YP_001487766.1 157693304 5621816 complement(2555532..2555915) 1 NC_009848.1 Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 2555915 speD 5621816 speD Bacillus pumilus SAFR-032 S-adenosylmethionine decarboxylase YP_001487766.1 2555532 R 315750 CDS YP_001487767.1 157693305 5621817 complement(2556147..2557169) 1 NC_009848.1 NADP-dependent; catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; active during gluconeogenesis; glyceraldehyde-3-phosphate dehydrogenase 2557169 gapB 5621817 gapB Bacillus pumilus SAFR-032 glyceraldehyde-3-phosphate dehydrogenase YP_001487767.1 2556147 R 315750 CDS YP_001487768.1 157693306 5621818 complement(2557342..2557947) 1 NC_009848.1 catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 2557947 coaE 5621818 coaE Bacillus pumilus SAFR-032 dephospho-CoA kinase YP_001487768.1 2557342 R 315750 CDS YP_001487769.1 157693307 5621819 complement(2557962..2558594) 1 NC_009848.1 hypothetical protein 2558594 ytaF 5621819 ytaF Bacillus pumilus SAFR-032 hypothetical protein YP_001487769.1 2557962 R 315750 CDS YP_001487770.1 157693308 5621820 complement(2558771..2559601) 1 NC_009848.1 Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 2559601 mutM 5621820 mutM Bacillus pumilus SAFR-032 formamidopyrimidine-DNA glycosylase YP_001487770.1 2558771 R 315750 CDS YP_001487771.1 157693309 5621821 complement(2559630..2562269) 1 NC_009848.1 has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 2562269 polA 5621821 polA Bacillus pumilus SAFR-032 DNA polymerase I YP_001487771.1 2559630 R 315750 CDS YP_001487772.1 157693310 5621822 complement(2562523..2564265) 1 NC_009848.1 sensor histidine kinase PhoR 2564265 phoR 5621822 phoR Bacillus pumilus SAFR-032 sensor histidine kinase PhoR YP_001487772.1 2562523 R 315750 CDS YP_001487773.1 157693311 5621823 complement(2564258..2564986) 1 NC_009848.1 response regulator PhoP 2564986 phoP 5621823 phoP Bacillus pumilus SAFR-032 response regulator PhoP YP_001487773.1 2564258 R 315750 CDS YP_001487774.1 157693312 5621824 complement(2565174..2566112) 1 NC_009848.1 Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase 2566112 mdh 5621824 mdh Bacillus pumilus SAFR-032 malate dehydrogenase YP_001487774.1 2565174 R 315750 CDS YP_001487775.1 157693313 5621825 complement(2566147..2567418) 1 NC_009848.1 Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase 2567418 icd 5621825 icd Bacillus pumilus SAFR-032 isocitrate dehydrogenase YP_001487775.1 2566147 R 315750 CDS YP_001487776.1 157693314 5621826 complement(2567566..2568684) 1 NC_009848.1 catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase 2568684 citZ 5621826 citZ Bacillus pumilus SAFR-032 citrate synthase YP_001487776.1 2567566 R 315750 CDS YP_001487777.1 157693315 5621827 2568838..2569071 1 NC_009848.1 hypothetical protein 2569071 5621827 BPUM_2557 Bacillus pumilus SAFR-032 hypothetical protein YP_001487777.1 2568838 D 315750 CDS YP_001487778.1 157693316 5621828 complement(2569061..2569525) 1 NC_009848.1 hypothetical protein 2569525 ytwI 5621828 ytwI Bacillus pumilus SAFR-032 hypothetical protein YP_001487778.1 2569061 R 315750 CDS YP_001487779.1 157693317 5621829 2569626..2570744 1 NC_009848.1 sporulation integral membrane protein YtvI 2570744 ytvI 5621829 ytvI Bacillus pumilus SAFR-032 sporulation integral membrane protein YtvI YP_001487779.1 2569626 D 315750 CDS YP_001487780.1 157693318 5621830 complement(2570770..2571159) 1 NC_009848.1 F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein 2571159 fxsA 5621830 fxsA Bacillus pumilus SAFR-032 FxsA protein YP_001487780.1 2570770 R 315750 CDS YP_001487781.1 157693319 5621831 complement(2571262..2573022) 1 NC_009848.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 2573022 pyk 5621831 pyk Bacillus pumilus SAFR-032 pyruvate kinase YP_001487781.1 2571262 R 315750 CDS YP_001487782.1 157693320 5621832 complement(2573050..2574009) 1 NC_009848.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 2574009 pfkA 5621832 pfkA Bacillus pumilus SAFR-032 6-phosphofructokinase YP_001487782.1 2573050 R 315750 CDS YP_001487783.1 157693321 5621833 complement(2574351..2575328) 1 NC_009848.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 2575328 accA2 5621833 accA2 Bacillus pumilus SAFR-032 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_001487783.1 2574351 R 315750 CDS YP_001487784.1 157693322 5621834 complement(2575313..2576188) 1 NC_009848.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 2576188 accD 5621834 accD Bacillus pumilus SAFR-032 acetyl-CoA carboxylase subunit beta YP_001487784.1 2575313 R 315750 CDS YP_001487785.1 157693323 5621835 complement(2576493..2577725) 1 NC_009848.1 malate dehydrogenase 2577725 5621835 BPUM_2565 Bacillus pumilus SAFR-032 malate dehydrogenase YP_001487785.1 2576493 R 315750 CDS YP_001487786.1 157693324 5621836 complement(2577867..2581202) 1 NC_009848.1 catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE 2581202 dnaE 5621836 dnaE Bacillus pumilus SAFR-032 DNA polymerase III DnaE YP_001487786.1 2577867 R 315750 CDS YP_001487787.1 157693325 5621837 2581340..2581681 1 NC_009848.1 sporulation protein YtrH 2581681 ytrH 5621837 ytrH Bacillus pumilus SAFR-032 sporulation protein YtrH YP_001487787.1 2581340 D 315750 CDS YP_001487788.1 157693326 5621838 2581678..2582181 1 NC_009848.1 sporulation protein YtrI 2582181 ytrI 5621838 ytrI Bacillus pumilus SAFR-032 sporulation protein YtrI YP_001487788.1 2581678 D 315750 CDS YP_001487789.1 157693327 5621839 2582291..2582476 1 NC_009848.1 hypothetical protein 2582476 5621839 BPUM_2569 Bacillus pumilus SAFR-032 hypothetical protein YP_001487789.1 2582291 D 315750 CDS YP_001487790.1 157693328 5621840 complement(2582527..2583468) 1 NC_009848.1 hypothetical protein 2583468 ytqI 5621840 ytqI Bacillus pumilus SAFR-032 hypothetical protein YP_001487790.1 2582527 R 315750 CDS YP_001487791.1 157693329 5621841 2583616..2583918 1 NC_009848.1 hypothetical protein 2583918 ytpI 5621841 ytpI Bacillus pumilus SAFR-032 hypothetical protein YP_001487791.1 2583616 D 315750 CDS YP_001487792.1 157693330 5621842 complement(2583986..2585308) 1 NC_009848.1 hypothetical protein 2585308 ytoI 5621842 ytoI Bacillus pumilus SAFR-032 hypothetical protein YP_001487792.1 2583986 R 315750 CDS YP_001487793.1 157693331 5621843 complement(2585455..2586138) 1 NC_009848.1 catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins; metal-dependent hydrolase 2586138 ytkL 5621843 ytkL Bacillus pumilus SAFR-032 metal-dependent hydrolase YP_001487793.1 2585455 R 315750 CDS YP_001487794.1 157693332 5621844 complement(2586205..2586960) 1 NC_009848.1 catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 2586960 fabG 5621844 fabG Bacillus pumilus SAFR-032 3-ketoacyl-ACP reductase YP_001487794.1 2586205 R 315750 CDS YP_001487795.1 157693333 5621845 complement(2587067..2587969) 1 NC_009848.1 hypothetical protein 2587969 5621845 BPUM_2575 Bacillus pumilus SAFR-032 hypothetical protein YP_001487795.1 2587067 R 315750 CDS YP_001487796.1 157693334 5621846 complement(2588090..2589463) 1 NC_009848.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 2589463 argH 5621846 argH Bacillus pumilus SAFR-032 argininosuccinate lyase YP_001487796.1 2588090 R 315750 CDS YP_001487797.1 157693335 5621847 complement(2589460..2590671) 1 NC_009848.1 catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 2590671 argG 5621847 argG Bacillus pumilus SAFR-032 argininosuccinate synthase YP_001487797.1 2589460 R 315750 CDS YP_001487798.1 157693336 5621849 complement(2591466..2592650) 1 NC_009848.1 AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 2592650 ackA 5621849 ackA Bacillus pumilus SAFR-032 acetate kinase YP_001487798.1 2591466 R 315750 CDS YP_001487799.1 157693337 5621850 complement(2592880..2593854) 1 NC_009848.1 adenine specific DNA methyltransferase 2593854 ytxK 5621850 ytxK Bacillus pumilus SAFR-032 adenine specific DNA methyltransferase YP_001487799.1 2592880 R 315750 CDS YP_001487800.1 157693338 5621851 complement(2593944..2594444) 1 NC_009848.1 antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 2594444 tpx 5621851 tpx Bacillus pumilus SAFR-032 thiol peroxidase YP_001487800.1 2593944 R 315750 CDS YP_001487801.1 157693339 5621852 complement(2594557..2595009) 1 NC_009848.1 sporulation protein YtfJ 2595009 ytfJ 5621852 ytfJ Bacillus pumilus SAFR-032 sporulation protein YtfJ YP_001487801.1 2594557 R 315750 CDS YP_001487802.1 157693340 5621853 complement(2595024..2595731) 1 NC_009848.1 hypothetical protein 2595731 ytfI 5621853 ytfI Bacillus pumilus SAFR-032 hypothetical protein YP_001487802.1 2595024 R 315750 CDS YP_001487803.1 157693341 5621854 complement(2595830..2596351) 1 NC_009848.1 hypothetical protein 2596351 yteJ 5621854 yteJ Bacillus pumilus SAFR-032 hypothetical protein YP_001487803.1 2595830 R 315750 CDS YP_001487804.1 157693342 5621855 complement(2596366..2597367) 1 NC_009848.1 periplasmic serine protease; peptidase 2597367 sppA 5621855 sppA Bacillus pumilus SAFR-032 peptidase YP_001487804.1 2596366 R 315750 CDS YP_001487805.1 157693343 5621856 2597813..2598616 1 NC_009848.1 catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2598616 ppnK 5621856 ppnK Bacillus pumilus SAFR-032 inorganic polyphosphate/ATP-NAD kinase YP_001487805.1 2597813 D 315750 CDS YP_001487806.1 157693344 5621857 2598868..2600310 1 NC_009848.1 DEAD/DEAH box helicase 2600310 5621857 BPUM_2587 Bacillus pumilus SAFR-032 DEAD/DEAH box helicase YP_001487806.1 2598868 D 315750 CDS YP_001487807.1 157693345 5621858 2600498..2601553 1 NC_009848.1 fatty acid desaturase 2601553 des 5621858 des Bacillus pumilus SAFR-032 fatty acid desaturase YP_001487807.1 2600498 D 315750 CDS YP_001487808.1 157693346 5621859 2601670..2602806 1 NC_009848.1 YocF; sensor histidine kinase 2602806 desK 5621859 desK Bacillus pumilus SAFR-032 sensor histidine kinase YP_001487808.1 2601670 D 315750 CDS YP_001487809.1 157693347 5621860 2602803..2603402 1 NC_009848.1 response regulator 2603402 desR 5621860 desR Bacillus pumilus SAFR-032 response regulator YP_001487809.1 2602803 D 315750 CDS YP_001487810.1 157693348 5621861 2603603..2604523 1 NC_009848.1 YxeB; iron ABC transporter binding protein 2604523 5621861 BPUM_2591 Bacillus pumilus SAFR-032 iron ABC transporter binding protein YP_001487810.1 2603603 D 315750 CDS YP_001487811.1 157693349 5621862 2604547..2605323 1 NC_009848.1 response regulator 2605323 ytsA 5621862 ytsA Bacillus pumilus SAFR-032 response regulator YP_001487811.1 2604547 D 315750 CDS YP_001487812.1 157693350 5621863 2605323..2606327 1 NC_009848.1 sensor histidine kinase 2606327 ytsB 5621863 ytsB Bacillus pumilus SAFR-032 sensor histidine kinase YP_001487812.1 2605323 D 315750 CDS YP_001487813.1 157693351 5621864 2606433..2607194 1 NC_009848.1 BceA; ABC transporter ATP-binding protein 2607194 ytsC 5621864 ytsC Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001487813.1 2606433 D 315750 CDS YP_001487814.1 157693352 5621865 2607184..2609121 1 NC_009848.1 BceB; ABC transporter ATP-binding protein 2609121 ytsD 5621865 ytsD Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001487814.1 2607184 D 315750 CDS YP_001487815.1 157693353 5621866 complement(2609161..2610513) 1 NC_009848.1 hypothetical protein 2610513 5621866 BPUM_2596 Bacillus pumilus SAFR-032 hypothetical protein YP_001487815.1 2609161 R 315750 CDS YP_001487816.1 157693354 5621867 complement(2610616..2611203) 1 NC_009848.1 NAD(P)H dehydrogenase (quinone) 2611203 5621867 BPUM_2597 Bacillus pumilus SAFR-032 NAD(P)H dehydrogenase (quinone) YP_001487816.1 2610616 R 315750 CDS YP_001487817.1 157693355 5621868 2611321..2611767 1 NC_009848.1 transcriptional regulator 2611767 5621868 BPUM_2598 Bacillus pumilus SAFR-032 transcriptional regulator YP_001487817.1 2611321 D 315750 CDS YP_001487818.1 157693356 5621869 complement(2611839..2612453) 1 NC_009848.1 LysE family L-lysine exporter 2612453 yisU 5621869 yisU Bacillus pumilus SAFR-032 LysE family L-lysine exporter YP_001487818.1 2611839 R 315750 CDS YP_001487819.1 157693357 5621870 complement(2612584..2614164) 1 NC_009848.1 bifunctional AMP-dependent acyl-coenzyme A synthetase/ligase 2614164 ytcI 5621870 ytcI Bacillus pumilus SAFR-032 bifunctional AMP-dependent acyl-coenzyme A synthetase/ligase YP_001487819.1 2612584 R 315750 CDS YP_001487820.1 157693358 5621871 complement(2614390..2614602) 1 NC_009848.1 small acid-soluble spore protein A 2614602 sspA 5621871 sspA Bacillus pumilus SAFR-032 small acid-soluble spore protein A YP_001487820.1 2614390 R 315750 CDS YP_001487821.1 157693359 5621872 complement(2614692..2615897) 1 NC_009848.1 Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI 2615897 thiI 5621872 thiI Bacillus pumilus SAFR-032 thiamine biosynthesis protein ThiI YP_001487821.1 2614692 R 315750 CDS YP_001487822.1 157693360 5621874 2617247..2618590 1 NC_009848.1 LIVCS family branched chain amino acid:cation symporter 2618590 braB1 5621874 braB1 Bacillus pumilus SAFR-032 LIVCS family branched chain amino acid:cation symporter YP_001487822.1 2617247 D 315750 CDS YP_001487823.1 157693361 5621875 2618805..2620148 1 NC_009848.1 LIVCS family branched chain amino acid:cation symporter 2620148 braB2 5621875 braB2 Bacillus pumilus SAFR-032 LIVCS family branched chain amino acid:cation symporter YP_001487823.1 2618805 D 315750 CDS YP_001487824.1 157693362 5621876 complement(2620189..2621892) 1 NC_009848.1 acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA 2621892 ezrA 5621876 ezrA Bacillus pumilus SAFR-032 septation ring formation regulator EzrA YP_001487824.1 2620189 R 315750 CDS YP_001487825.1 157693363 5621877 2622233..2623048 1 NC_009848.1 catalyzes the formation of L-histidinol from L-histidinol phosphate; histidinol-phosphatase 2623048 hisK 5621877 hisK Bacillus pumilus SAFR-032 histidinol-phosphatase YP_001487825.1 2622233 D 315750 CDS YP_001487826.1 157693364 5621878 complement(2623018..2623683) 1 NC_009848.1 transcriptional regulator 2623683 yttP 5621878 yttP Bacillus pumilus SAFR-032 transcriptional regulator YP_001487826.1 2623018 R 315750 CDS YP_001487827.1 157693365 5621879 2623810..2624307 1 NC_009848.1 hypothetical protein 2624307 ytsP 5621879 ytsP Bacillus pumilus SAFR-032 hypothetical protein YP_001487827.1 2623810 D 315750 CDS YP_001487828.1 157693366 5621880 2624606..2625208 1 NC_009848.1 primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 2625208 rpsD 5621880 rpsD Bacillus pumilus SAFR-032 30S ribosomal protein S4 YP_001487828.1 2624606 D 315750 CDS YP_001487829.1 157693367 5621881 2625361..2625969 1 NC_009848.1 hypothetical protein 2625969 5621881 BPUM_2611 Bacillus pumilus SAFR-032 hypothetical protein YP_001487829.1 2625361 D 315750 CDS YP_001487830.1 157693368 5621882 complement(2626012..2626575) 1 NC_009848.1 amidohydrolase 2626575 yrdC 5621882 yrdC Bacillus pumilus SAFR-032 amidohydrolase YP_001487830.1 2626012 R 315750 CDS YP_001487831.1 157693369 5621883 complement(2626791..2627438) 1 NC_009848.1 triacylglycerol lipase 2627438 lip 5621883 lip Bacillus pumilus SAFR-032 triacylglycerol lipase YP_001487831.1 2626791 R 315750 CDS YP_001487832.1 157693370 5621884 2627640..2627942 1 NC_009848.1 antibiotic biosynthesis monooxygenase 2627942 5621884 BPUM_2614 Bacillus pumilus SAFR-032 antibiotic biosynthesis monooxygenase YP_001487832.1 2627640 D 315750 CDS YP_001487833.1 157693371 5621885 complement(2628110..2629378) 1 NC_009848.1 catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 2629378 tyrS 5621885 tyrS Bacillus pumilus SAFR-032 tyrosyl-tRNA synthetase YP_001487833.1 2628110 R 315750 CDS YP_001487834.1 157693372 5621886 complement(2629728..2631452) 1 NC_009848.1 Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase 2631452 acsA1 5621886 acsA1 Bacillus pumilus SAFR-032 acetyl-CoA synthetase YP_001487834.1 2629728 R 315750 CDS YP_001487835.1 157693373 5621887 2631608..2632240 1 NC_009848.1 acetoin dehydrogenase AcuA 2632240 acuA 5621887 acuA Bacillus pumilus SAFR-032 acetoin dehydrogenase AcuA YP_001487835.1 2631608 D 315750 CDS YP_001487836.1 157693374 5621888 2632280..2632921 1 NC_009848.1 acetoin dehydrogenase AcuB 2632921 acuB 5621888 acuB Bacillus pumilus SAFR-032 acetoin dehydrogenase AcuB YP_001487836.1 2632280 D 315750 CDS YP_001487837.1 157693375 5621889 2632918..2634078 1 NC_009848.1 acetoin dehydrogenase AcuC 2634078 acuC 5621889 acuC Bacillus pumilus SAFR-032 acetoin dehydrogenase AcuC YP_001487837.1 2632918 D 315750 CDS YP_001487838.1 157693376 5621890 complement(2634121..2635122) 1 NC_009848.1 catabolite control protein A; PurR family transcriptional regulator 2635122 ccpA 5621890 ccpA Bacillus pumilus SAFR-032 PurR family transcriptional regulator YP_001487838.1 2634121 R 315750 CDS YP_001487839.1 157693377 5621891 complement(2635575..2636651) 1 NC_009848.1 catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase 2636651 aroA 5621891 aroA Bacillus pumilus SAFR-032 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase YP_001487839.1 2635575 R 315750 CDS YP_001487840.1 157693378 5621892 2636641..2636805 1 NC_009848.1 hypothetical protein 2636805 5621892 BPUM_2622 Bacillus pumilus SAFR-032 hypothetical protein YP_001487840.1 2636641 D 315750 CDS YP_001487841.1 157693379 5621893 complement(2636869..2637192) 1 NC_009848.1 hypothetical protein 2637192 ytxJ 5621893 ytxJ Bacillus pumilus SAFR-032 hypothetical protein YP_001487841.1 2636869 R 315750 CDS YP_001487842.1 157693380 5621894 complement(2637226..2637696) 1 NC_009848.1 hypothetical protein 2637696 ytxH 5621894 ytxH Bacillus pumilus SAFR-032 hypothetical protein YP_001487842.1 2637226 R 315750 CDS YP_001487843.1 157693381 5621895 complement(2637723..2638142) 1 NC_009848.1 hypothetical protein 2638142 ytxG 5621895 ytxG Bacillus pumilus SAFR-032 hypothetical protein YP_001487843.1 2637723 R 315750 CDS YP_001487844.1 157693382 5621896 complement(2638367..2639665) 1 NC_009848.1 Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 2639665 murC 5621896 murC Bacillus pumilus SAFR-032 UDP-N-acetylmuramate--L-alanine ligase YP_001487844.1 2638367 R 315750 CDS YP_001487845.1 157693383 5621897 complement(2639969..2642650) 1 NC_009848.1 FtsK/SpoIIIE family cell division protein 2642650 ytpT 5621897 ytpT Bacillus pumilus SAFR-032 FtsK/SpoIIIE family cell division protein YP_001487845.1 2639969 R 315750 CDS YP_001487846.1 157693384 5621898 complement(2642912..2643517) 1 NC_009848.1 PheRS aminoacylate phenylalanine transfer RNA 2643517 ytpR 5621898 ytpR Bacillus pumilus SAFR-032 PheRS aminoacylate phenylalanine transfer RNA YP_001487846.1 2642912 R 315750 CDS YP_001487847.1 157693385 5621899 complement(2643534..2644346) 1 NC_009848.1 hypothetical protein 2644346 ytpQ 5621899 ytpQ Bacillus pumilus SAFR-032 hypothetical protein YP_001487847.1 2643534 R 315750 CDS YP_001487848.1 157693386 5621900 complement(2644366..2644686) 1 NC_009848.1 thioredoxin protein 2644686 ytpP 5621900 ytpP Bacillus pumilus SAFR-032 thioredoxin protein YP_001487848.1 2644366 R 315750 CDS YP_001487849.1 157693387 5621901 complement(2644673..2645701) 1 NC_009848.1 possible PfoR family toxin regulator; toxin regulator 2645701 5621901 BPUM_2631 Bacillus pumilus SAFR-032 toxin regulator YP_001487849.1 2644673 R 315750 CDS YP_001487850.1 157693388 5621902 2645902..2646348 1 NC_009848.1 hypothetical protein 2646348 ytoQ 5621902 ytoQ Bacillus pumilus SAFR-032 hypothetical protein YP_001487850.1 2645902 D 315750 CDS YP_001487851.1 157693389 5621903 complement(2646562..2647635) 1 NC_009848.1 M42 family peptidase; glutamyl aminopeptidase 2647635 ytoP 5621903 ytoP Bacillus pumilus SAFR-032 glutamyl aminopeptidase YP_001487851.1 2646562 R 315750 CDS YP_001487852.1 157693390 5621904 2647835..2648149 1 NC_009848.1 hypothetical protein 2648149 ytzB 5621904 ytzB Bacillus pumilus SAFR-032 hypothetical protein YP_001487852.1 2647835 D 315750 CDS YP_001487853.1 157693391 5621905 complement(2648193..2649890) 1 NC_009848.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 2649890 malS 5621905 malS Bacillus pumilus SAFR-032 malate dehydrogenase YP_001487853.1 2648193 R 315750 CDS YP_001487854.1 157693392 5621906 complement(2649964..2650812) 1 NC_009848.1 metal dependent hydrolase 2650812 ytnP 5621906 ytnP Bacillus pumilus SAFR-032 metal dependent hydrolase YP_001487854.1 2649964 R 315750 CDS YP_001487855.1 157693393 5621907 complement(2650927..2651568) 1 NC_009848.1 tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 2651568 trmB 5621907 trmB Bacillus pumilus SAFR-032 tRNA (guanine-N(7)-)-methyltransferase YP_001487855.1 2650927 R 315750 CDS YP_001487856.1 157693394 5621908 2651757..2652032 1 NC_009848.1 hypothetical protein 2652032 ytzH 5621908 ytzH Bacillus pumilus SAFR-032 hypothetical protein YP_001487856.1 2651757 D 315750 CDS YP_001487857.1 157693395 5621909 complement(2652029..2652841) 1 NC_009848.1 choline kinase 2652841 ytmP 5621909 ytmP Bacillus pumilus SAFR-032 choline kinase YP_001487857.1 2652029 R 315750 CDS YP_001487858.1 157693396 5621910 complement(2653115..2654044) 1 NC_009848.1 sphingosine kinase 2654044 ytlR 5621910 ytlR Bacillus pumilus SAFR-032 sphingosine kinase YP_001487858.1 2653115 R 315750 CDS YP_001487859.1 157693397 5621911 complement(2654093..2655028) 1 NC_009848.1 hypothetical protein 2655028 ytlQ 5621911 ytlQ Bacillus pumilus SAFR-032 hypothetical protein YP_001487859.1 2654093 R 315750 CDS YP_001487860.1 157693398 5621912 complement(2655054..2655605) 1 NC_009848.1 2'-5' RNA ligase 2655605 ytlP 5621912 ytlP Bacillus pumilus SAFR-032 2'-5' RNA ligase YP_001487860.1 2655054 R 315750 CDS YP_001487861.1 157693399 5621913 2655700..2656629 1 NC_009848.1 cysteine synthase 2656629 ytkP 5621913 ytkP Bacillus pumilus SAFR-032 cysteine synthase YP_001487861.1 2655700 D 315750 CDS YP_001487862.1 157693400 5621914 complement(2656681..2657307) 1 NC_009848.1 S51 peptidase 2657307 5621914 BPUM_2644 Bacillus pumilus SAFR-032 S51 peptidase YP_001487862.1 2656681 R 315750 CDS YP_001487863.1 157693401 5621915 complement(2657331..2658740) 1 NC_009848.1 divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV 2658740 ytjP 5621915 ytjP Bacillus pumilus SAFR-032 dipeptidase PepV YP_001487863.1 2657331 R 315750 CDS YP_001487864.1 157693402 5621916 2658827..2660125 1 NC_009848.1 NCS2 family nucleobase:cation symporter-2 2660125 ytiP 5621916 ytiP Bacillus pumilus SAFR-032 NCS2 family nucleobase:cation symporter-2 YP_001487864.1 2658827 D 315750 CDS YP_001487865.1 157693403 5621917 2660497..2660718 1 NC_009848.1 hypothetical protein 2660718 ytzE 5621917 ytzE Bacillus pumilus SAFR-032 hypothetical protein YP_001487865.1 2660497 D 315750 CDS YP_001487866.1 157693404 5621918 complement(2660915..2661631) 1 NC_009848.1 pseudouridylate synthase 2661631 rsuA 5621918 rsuA Bacillus pumilus SAFR-032 pseudouridylate synthase YP_001487866.1 2660915 R 315750 CDS YP_001487867.1 157693405 5621919 complement(2661649..2663286) 1 NC_009848.1 PST family polysaccharide transporter 2663286 ytgP 5621919 ytgP Bacillus pumilus SAFR-032 PST family polysaccharide transporter YP_001487867.1 2661649 R 315750 CDS YP_001487868.1 157693406 5621920 2663447..2664718 1 NC_009848.1 flavoprotein 2664718 ytfP 5621920 ytfP Bacillus pumilus SAFR-032 flavoprotein YP_001487868.1 2663447 D 315750 CDS YP_001487869.1 157693407 5621921 2664715..2664912 1 NC_009848.1 hypothetical protein 2664912 5621921 BPUM_2651 Bacillus pumilus SAFR-032 hypothetical protein YP_001487869.1 2664715 D 315750 CDS YP_001487870.1 157693408 5621922 2665053..2666585 1 NC_009848.1 BCCT family betaine transporter 2666585 opuD 5621922 opuD Bacillus pumilus SAFR-032 BCCT family betaine transporter YP_001487870.1 2665053 D 315750 CDS YP_001487871.1 157693409 5621923 2666688..2667236 1 NC_009848.1 hypothetical protein 2667236 cbrC 5621923 cbrC Bacillus pumilus SAFR-032 hypothetical protein YP_001487871.1 2666688 D 315750 CDS YP_001487872.1 157693410 5621924 complement(2667279..2667470) 1 NC_009848.1 hypothetical protein 2667470 yteV 5621924 yteV Bacillus pumilus SAFR-032 hypothetical protein YP_001487872.1 2667279 R 315750 CDS YP_001487873.1 157693411 5621925 complement(2667563..2667874) 1 NC_009848.1 rhodanese protein 2667874 ytwF 5621925 ytwF Bacillus pumilus SAFR-032 rhodanese protein YP_001487873.1 2667563 R 315750 CDS YP_001487874.1 157693412 5621926 complement(2667929..2668612) 1 NC_009848.1 integral membrane protein 2668612 yteU 5621926 yteU Bacillus pumilus SAFR-032 integral membrane protein YP_001487874.1 2667929 R 315750 CDS YP_001487875.1 157693413 5621927 complement(2668634..2669926) 1 NC_009848.1 dehydrogenase 2669926 yteT 5621927 yteT Bacillus pumilus SAFR-032 dehydrogenase YP_001487875.1 2668634 R 315750 CDS YP_001487876.1 157693414 5621928 complement(2669944..2670468) 1 NC_009848.1 hypothetical protein 2670468 yteS 5621928 yteS Bacillus pumilus SAFR-032 hypothetical protein YP_001487876.1 2669944 R 315750 CDS YP_001487877.1 157693415 5621929 complement(2670465..2671577) 1 NC_009848.1 unsaturated glucuronyl hydrolase 2671577 yteR 5621929 yteR Bacillus pumilus SAFR-032 unsaturated glucuronyl hydrolase YP_001487877.1 2670465 R 315750 CDS YP_001487878.1 157693416 5621930 complement(2671596..2672561) 1 NC_009848.1 ABC transporter ATP-binding protein 2672561 lplBA 5621930 lplBA Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001487878.1 2671596 R 315750 CDS YP_001487879.1 157693417 5621931 2672781..2675093 1 NC_009848.1 transcriptional regulator 2675093 ytdP 5621931 ytdP Bacillus pumilus SAFR-032 transcriptional regulator YP_001487879.1 2672781 D 315750 CDS YP_001487880.1 157693418 5621932 complement(2675129..2675533) 1 NC_009848.1 transcriptional regulator 2675533 ytcD 5621932 ytcD Bacillus pumilus SAFR-032 transcriptional regulator YP_001487880.1 2675129 R 315750 CDS YP_001487881.1 157693419 5621933 2675656..2676861 1 NC_009848.1 major facilitator superfamily transporter 2676861 5621933 BPUM_2663 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001487881.1 2675656 D 315750 CDS YP_001487882.1 157693420 5621934 2676858..2677697 1 NC_009848.1 Ara1; aldo/keto reductase 2677697 ytbE 5621934 ytbE Bacillus pumilus SAFR-032 aldo/keto reductase YP_001487882.1 2676858 D 315750 CDS YP_001487883.1 157693421 5621935 complement(2677743..2679242) 1 NC_009848.1 ABC transporter ATP-binding protein 2679242 ytcQ 5621935 ytcQ Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001487883.1 2677743 R 315750 CDS YP_001487884.1 157693422 5621936 complement(2679268..2680146) 1 NC_009848.1 ABC transporter ATP-binding protein 2680146 ytcP 5621936 ytcP Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001487884.1 2679268 R 315750 CDS YP_001487885.1 157693423 5621937 complement(2680348..2681097) 1 NC_009848.1 hypothetical protein 2681097 ytbQ 5621937 ytbQ Bacillus pumilus SAFR-032 hypothetical protein YP_001487885.1 2680348 R 315750 CDS YP_001487886.1 157693424 5621938 complement(2681147..2682076) 1 NC_009848.1 possible S09C acylaminoacyl peptidase; hypothetical protein 2682076 ytaP 5621938 ytaP Bacillus pumilus SAFR-032 hypothetical protein YP_001487886.1 2681147 R 315750 CDS YP_001487887.1 157693425 5621939 complement(2682179..2684728) 1 NC_009848.1 leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 2684728 leuS 5621939 leuS Bacillus pumilus SAFR-032 leucyl-tRNA synthetase YP_001487887.1 2682179 R 315750 CDS YP_001487888.1 157693426 5621940 complement(2685016..2685432) 1 NC_009848.1 hypothetical protein 2685432 ytvB 5621940 ytvB Bacillus pumilus SAFR-032 hypothetical protein YP_001487888.1 2685016 R 315750 CDS YP_001487889.1 157693427 5621941 2685771..2686574 1 NC_009848.1 hypothetical protein 2686574 ytvA1 5621941 ytvA1 Bacillus pumilus SAFR-032 hypothetical protein YP_001487889.1 2685771 D 315750 CDS YP_001487890.1 157693428 5621942 2686664..2687362 1 NC_009848.1 hypothetical protein 2687362 yttA 5621942 yttA Bacillus pumilus SAFR-032 hypothetical protein YP_001487890.1 2686664 D 315750 CDS YP_001487891.1 157693429 5621943 complement(2687426..2688736) 1 NC_009848.1 ABC transporter ATP-binding protein 2688736 ytrF 5621943 ytrF Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001487891.1 2687426 R 315750 CDS YP_001487892.1 157693430 5621944 complement(2688726..2689424) 1 NC_009848.1 ABC transporter ATP-binding protein 2689424 ytrE 5621944 ytrE Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001487892.1 2688726 R 315750 CDS YP_001487893.1 157693431 5621945 complement(2689445..2690437) 1 NC_009848.1 ABC transporter ATP-binding protein 2690437 ytrC 5621945 ytrC Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001487893.1 2689445 R 315750 CDS YP_001487894.1 157693432 5621946 complement(2690431..2691327) 1 NC_009848.1 possible CcmAABC superfamily ATP binding cassette transporter, ABC protein; ABC transporter ATP-binding protein 2691327 ytrB 5621946 ytrB Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001487894.1 2690431 R 315750 CDS YP_001487895.1 157693433 5621947 complement(2691302..2691715) 1 NC_009848.1 transcriptional regulator 2691715 ytrA 5621947 ytrA Bacillus pumilus SAFR-032 transcriptional regulator YP_001487895.1 2691302 R 315750 CDS YP_001487896.1 157693434 5621948 complement(2691712..2691891) 1 NC_009848.1 hypothetical protein 2691891 5621948 BPUM_2678 Bacillus pumilus SAFR-032 hypothetical protein YP_001487896.1 2691712 R 315750 CDS YP_001487897.1 157693435 5621949 complement(2692033..2692332) 1 NC_009848.1 hypothetical protein 2692332 ytzC 5621949 ytzC Bacillus pumilus SAFR-032 hypothetical protein YP_001487897.1 2692033 R 315750 CDS YP_001487898.1 157693436 5621950 2692461..2693426 1 NC_009848.1 hypothetical protein 2693426 5621950 BPUM_2680 Bacillus pumilus SAFR-032 hypothetical protein YP_001487898.1 2692461 D 315750 CDS YP_001487899.1 157693437 5621951 2693423..2693998 1 NC_009848.1 rRNA methyltransferase 2693998 ytqB 5621951 ytqB Bacillus pumilus SAFR-032 rRNA methyltransferase YP_001487899.1 2693423 D 315750 CDS YP_001487900.1 157693438 5621952 complement(2694014..2695093) 1 NC_009848.1 hypothetical protein 2695093 ytpB 5621952 ytpB Bacillus pumilus SAFR-032 hypothetical protein YP_001487900.1 2694014 R 315750 CDS YP_001487901.1 157693439 5621953 complement(2695124..2695903) 1 NC_009848.1 possible PldB family lysophospholipase; lysophospholipase 2695903 ytpA 5621953 ytpA Bacillus pumilus SAFR-032 lysophospholipase YP_001487901.1 2695124 R 315750 CDS YP_001487902.1 157693440 5621954 2695949..2696464 1 NC_009848.1 possible PaaY family carbonic anhydrase; acetyltransferase 2696464 ytoA 5621954 ytoA Bacillus pumilus SAFR-032 acetyltransferase YP_001487902.1 2695949 D 315750 CDS YP_001487903.1 157693441 5621955 complement(2696606..2698504) 1 NC_009848.1 asparagine synthase 2698504 asnB 5621955 asnB Bacillus pumilus SAFR-032 asparagine synthase YP_001487903.1 2696606 R 315750 CDS YP_001487904.1 157693442 5621956 complement(2698653..2699855) 1 NC_009848.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 2699855 metK 5621956 metK Bacillus pumilus SAFR-032 S-adenosylmethionine synthetase YP_001487904.1 2698653 R 315750 CDS YP_001487905.1 157693443 5621957 2700412..2701998 1 NC_009848.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 2701998 pckA 5621957 pckA Bacillus pumilus SAFR-032 phosphoenolpyruvate carboxykinase YP_001487905.1 2700412 D 315750 CDS YP_001487906.1 157693444 5621958 complement(2702041..2702283) 1 NC_009848.1 hypothetical protein 2702283 5621958 BPUM_2688 Bacillus pumilus SAFR-032 hypothetical protein YP_001487906.1 2702041 R 315750 CDS YP_001487907.1 157693445 5621959 complement(2702323..2703117) 1 NC_009848.1 peptidase 2703117 ytmA 5621959 ytmA Bacillus pumilus SAFR-032 peptidase YP_001487907.1 2702323 R 315750 CDS YP_001487908.1 157693446 5621960 complement(2703144..2704625) 1 NC_009848.1 phytoene dehydrogenase 2704625 5621960 BPUM_2690 Bacillus pumilus SAFR-032 phytoene dehydrogenase YP_001487908.1 2703144 R 315750 CDS YP_001487909.1 157693447 5621961 complement(2704622..2705749) 1 NC_009848.1 glycosyltransferase 2705749 5621961 BPUM_2691 Bacillus pumilus SAFR-032 glycosyltransferase YP_001487909.1 2704622 R 315750 CDS YP_001487910.1 157693448 5621962 complement(2705734..2706390) 1 NC_009848.1 phospholipid/glycerol acyltransferase 2706390 5621962 BPUM_2692 Bacillus pumilus SAFR-032 phospholipid/glycerol acyltransferase YP_001487910.1 2705734 R 315750 CDS YP_001487911.1 157693449 5621963 complement(2706449..2707177) 1 NC_009848.1 hypothetical protein 2707177 5621963 BPUM_2693 Bacillus pumilus SAFR-032 hypothetical protein YP_001487911.1 2706449 R 315750 CDS YP_001487912.1 157693450 5621964 2707351..2708352 1 NC_009848.1 ABC transporter ATP-binding protein 2708352 5621964 BPUM_2694 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001487912.1 2707351 D 315750 CDS YP_001487913.1 157693451 5621965 2708368..2709138 1 NC_009848.1 ABC transporter ATP-binding protein 2709138 ytlC 5621965 ytlC Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001487913.1 2708368 D 315750 CDS YP_001487914.1 157693452 5621966 2709125..2709919 1 NC_009848.1 ABC transporter ATP-binding protein 2709919 ytlD 5621966 ytlD Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001487914.1 2709125 D 315750 CDS YP_001487915.1 157693453 5621967 complement(2709952..2710428) 1 NC_009848.1 MutT/NUDIX family phosphohydrolase 2710428 ytkD 5621967 ytkD Bacillus pumilus SAFR-032 MutT/NUDIX family phosphohydrolase YP_001487915.1 2709952 R 315750 CDS YP_001487916.1 157693454 5621968 2710677..2711330 1 NC_009848.1 stress protein 2711330 5621968 BPUM_2698 Bacillus pumilus SAFR-032 stress protein YP_001487916.1 2710677 D 315750 CDS YP_001487917.1 157693455 5621969 2711353..2712144 1 NC_009848.1 hypothetical protein 2712144 5621969 BPUM_2699 Bacillus pumilus SAFR-032 hypothetical protein YP_001487917.1 2711353 D 315750 CDS YP_001487918.1 157693456 5621970 complement(2712174..2712482) 1 NC_009848.1 possible hydrolase; hypothetical protein 2712482 5621970 BPUM_2700 Bacillus pumilus SAFR-032 hypothetical protein YP_001487918.1 2712174 R 315750 CDS YP_001487919.1 157693457 5621971 complement(2712526..2712930) 1 NC_009848.1 possible phage holin; hypothetical protein 2712930 ytkC 5621971 ytkC Bacillus pumilus SAFR-032 hypothetical protein YP_001487919.1 2712526 R 315750 CDS YP_001487920.1 157693458 5621972 complement(2713068..2713259) 1 NC_009848.1 hypothetical protein 2713259 5621972 BPUM_2702 Bacillus pumilus SAFR-032 hypothetical protein YP_001487920.1 2713068 R 315750 CDS YP_001487921.1 157693459 5621973 complement(2713385..2713822) 1 NC_009848.1 YtkB; DNA-binding protein DpsA 2713822 dpsA 5621973 dpsA Bacillus pumilus SAFR-032 DNA-binding protein DpsA YP_001487921.1 2713385 R 315750 CDS YP_001487922.1 157693460 5621974 complement(2714109..2714543) 1 NC_009848.1 hypothetical protein 2714543 ytkA 5621974 ytkA Bacillus pumilus SAFR-032 hypothetical protein YP_001487922.1 2714109 R 315750 CDS YP_001487923.1 157693461 5621975 complement(2714658..2715131) 1 NC_009848.1 catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 2715131 luxS 5621975 luxS Bacillus pumilus SAFR-032 S-ribosylhomocysteinase YP_001487923.1 2714658 R 315750 CDS YP_001487924.1 157693462 5621976 2715258..2715482 1 NC_009848.1 hypothetical protein 2715482 ytjA 5621976 ytjA Bacillus pumilus SAFR-032 hypothetical protein YP_001487924.1 2715258 D 315750 CDS YP_001487925.1 157693463 5621977 complement(2715484..2716047) 1 NC_009848.1 carbonate dehydratase 2716047 ytiB 5621977 ytiB Bacillus pumilus SAFR-032 carbonate dehydratase YP_001487925.1 2715484 R 315750 CDS YP_001487926.1 157693464 5621978 2716262..2717251 1 NC_009848.1 ABC transporter ATP-binding protein 2717251 5621978 BPUM_2708 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001487926.1 2716262 D 315750 CDS YP_001487927.1 157693465 5621979 complement(2717345..2717587) 1 NC_009848.1 RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 2717587 rpmE2 5621979 rpmE2 Bacillus pumilus SAFR-032 50S ribosomal protein L31 YP_001487927.1 2717345 R 315750 CDS YP_001487928.1 157693466 5621980 2717763..2719094 1 NC_009848.1 YthA; cytochrome bd ubiquinol oxidase, subunit I 2719094 5621980 BPUM_2710 Bacillus pumilus SAFR-032 cytochrome bd ubiquinol oxidase, subunit I YP_001487928.1 2717763 D 315750 CDS YP_001487929.1 157693467 5621981 2719110..2720162 1 NC_009848.1 cytochrome bd quinol oxidase, subunit II 2720162 5621981 BPUM_2711 Bacillus pumilus SAFR-032 cytochrome bd quinol oxidase, subunit II YP_001487929.1 2719110 D 315750 CDS YP_001487930.1 157693468 5621982 2720231..2720389 1 NC_009848.1 hypothetical protein 2720389 5621982 BPUM_2712 Bacillus pumilus SAFR-032 hypothetical protein YP_001487930.1 2720231 D 315750 CDS YP_001487931.1 157693469 5621983 2720415..2720606 1 NC_009848.1 hypothetical protein 2720606 5621983 BPUM_2713 Bacillus pumilus SAFR-032 hypothetical protein YP_001487931.1 2720415 D 315750 CDS YP_001487932.1 157693470 5621984 complement(2720713..2721837) 1 NC_009848.1 o-succinylbenzoate-CoA synthase 2721837 menC 5621984 menC Bacillus pumilus SAFR-032 o-succinylbenzoate-CoA synthase YP_001487932.1 2720713 R 315750 CDS YP_001487933.1 157693471 5621985 complement(2721824..2723284) 1 NC_009848.1 converts O-succinylbenzoate to O-succinylbenzoyl-CoA; O-succinylbenzoic acid--CoA ligase 2723284 menE 5621985 menE Bacillus pumilus SAFR-032 O-succinylbenzoic acid--CoA ligase YP_001487933.1 2721824 R 315750 CDS YP_001487934.1 157693472 5621986 complement(2723356..2724174) 1 NC_009848.1 catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 2724174 menB 5621986 menB Bacillus pumilus SAFR-032 naphthoate synthase YP_001487934.1 2723356 R 315750 CDS YP_001487935.1 157693473 5621987 complement(2724189..2725013) 1 NC_009848.1 hydrolase 2725013 ytxM 5621987 ytxM Bacillus pumilus SAFR-032 hydrolase YP_001487935.1 2724189 R 315750 CDS YP_001487936.1 157693474 5621988 complement(2724998..2726740) 1 NC_009848.1 SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 2726740 menD 5621988 menD Bacillus pumilus SAFR-032 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase YP_001487936.1 2724998 R 315750 CDS YP_001487937.1 157693475 5621989 complement(2726733..2728151) 1 NC_009848.1 isochorismate synthase 2728151 menF 5621989 menF Bacillus pumilus SAFR-032 isochorismate synthase YP_001487937.1 2726733 R 315750 CDS YP_001487938.1 157693476 5621990 2728533..2729471 1 NC_009848.1 catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 2729471 menA 5621990 menA Bacillus pumilus SAFR-032 1,4-dihydroxy-2-naphthoate octaprenyltransferase YP_001487938.1 2728533 D 315750 CDS YP_001487939.1 157693477 5621991 2729464..2729586 1 NC_009848.1 hypothetical protein 2729586 5621991 BPUM_2721 Bacillus pumilus SAFR-032 hypothetical protein YP_001487939.1 2729464 D 315750 CDS YP_001487940.1 157693478 5621992 2729595..2730326 1 NC_009848.1 YteA; DnaK suppressor protein 2730326 dksA 5621992 dksA Bacillus pumilus SAFR-032 DnaK suppressor protein YP_001487940.1 2729595 D 315750 CDS YP_001487941.1 157693479 5621993 2730412..2730888 1 NC_009848.1 YtaB; hypothetical protein 2730888 5621993 BPUM_2723 Bacillus pumilus SAFR-032 hypothetical protein YP_001487941.1 2730412 D 315750 CDS YP_001487942.1 157693480 5622018 2738885..2739460 1 NC_009848.1 YuaJ; PTT family thiamin transporter 2739460 5622018 BPUM_2725 Bacillus pumilus SAFR-032 PTT family thiamin transporter YP_001487942.1 2738885 D 315750 CDS YP_001487943.1 157693481 5622019 2739553..2739741 1 NC_009848.1 hypothetical protein 2739741 5622019 BPUM_2726 Bacillus pumilus SAFR-032 hypothetical protein YP_001487943.1 2739553 D 315750 CDS YP_001487944.1 157693482 5622020 complement(2739701..2740255) 1 NC_009848.1 YuaI; acetyltransferase 2740255 5622020 BPUM_2727 Bacillus pumilus SAFR-032 acetyltransferase YP_001487944.1 2739701 R 315750 CDS YP_001487945.1 157693483 5622021 2740424..2741059 1 NC_009848.1 hypothetical protein 2741059 5622021 BPUM_2728 Bacillus pumilus SAFR-032 hypothetical protein YP_001487945.1 2740424 D 315750 CDS YP_001487946.1 157693484 5622022 2741074..2742228 1 NC_009848.1 possible stage V sporulation protein E SpoVE; FtsW/RodA/SpoVE family cell division protein 2742228 5622022 BPUM_2729 Bacillus pumilus SAFR-032 FtsW/RodA/SpoVE family cell division protein YP_001487946.1 2741074 D 315750 CDS YP_001487947.1 157693485 5622024 complement(2743396..2744943) 1 NC_009848.1 flotillin 2744943 5622024 BPUM_2731 Bacillus pumilus SAFR-032 flotillin YP_001487947.1 2743396 R 315750 CDS YP_001487948.1 157693486 5622025 complement(2744955..2745485) 1 NC_009848.1 hypothetical protein 2745485 yuaF 5622025 yuaF Bacillus pumilus SAFR-032 hypothetical protein YP_001487948.1 2744955 R 315750 CDS YP_001487949.1 157693487 5622026 2745660..2746169 1 NC_009848.1 hypothetical protein 2746169 yuaE 5622026 yuaE Bacillus pumilus SAFR-032 hypothetical protein YP_001487949.1 2745660 D 315750 CDS YP_001487950.1 157693488 5622027 complement(2746209..2747417) 1 NC_009848.1 alcohol dehydrogenase 2747417 gbsB 5622027 gbsB Bacillus pumilus SAFR-032 alcohol dehydrogenase YP_001487950.1 2746209 R 315750 CDS YP_001487951.1 157693489 5622028 complement(2747445..2748914) 1 NC_009848.1 betaine aldehyde dehydrogenase 2748914 gbsA 5622028 gbsA Bacillus pumilus SAFR-032 betaine aldehyde dehydrogenase YP_001487951.1 2747445 R 315750 CDS YP_001487952.1 157693490 5622029 2749122..2749679 1 NC_009848.1 transcriptional regulator 2749679 yuaC 5622029 yuaC Bacillus pumilus SAFR-032 transcriptional regulator YP_001487952.1 2749122 D 315750 CDS YP_001487953.1 157693491 5622031 complement(2749879..2750067) 1 NC_009848.1 hypothetical protein 2750067 5622031 BPUM_2737 Bacillus pumilus SAFR-032 hypothetical protein YP_001487953.1 2749879 R 315750 CDS YP_001487954.1 157693492 5622032 complement(2750182..2751006) 1 NC_009848.1 M15C subfamily peptidase 2751006 5622032 BPUM_2738 Bacillus pumilus SAFR-032 M15C subfamily peptidase YP_001487954.1 2750182 R 315750 CDS YP_001487955.1 157693493 5622033 complement(2751063..2752133) 1 NC_009848.1 YkrP; acyltransferase 2752133 5622033 BPUM_2739 Bacillus pumilus SAFR-032 acyltransferase YP_001487955.1 2751063 R 315750 CDS YP_001487956.1 157693494 5622034 complement(2752196..2752459) 1 NC_009848.1 holin XhlB 2752459 xhlB 5622034 xhlB Bacillus pumilus SAFR-032 holin XhlB YP_001487956.1 2752196 R 315750 CDS YP_001487957.1 157693495 5622035 complement(2752471..2752683) 1 NC_009848.1 possible bacteriocin precursor; holin BhlA 2752683 bhlA 5622035 bhlA Bacillus pumilus SAFR-032 holin BhlA YP_001487957.1 2752471 R 315750 CDS YP_001487958.1 157693496 5622036 complement(2752818..2753903) 1 NC_009848.1 hypothetical protein 2753903 5622036 BPUM_2742 Bacillus pumilus SAFR-032 hypothetical protein YP_001487958.1 2752818 R 315750 CDS YP_001487959.1 157693497 5622037 complement(2754046..2754156) 1 NC_009848.1 hypothetical protein 2754156 5622037 BPUM_2743 Bacillus pumilus SAFR-032 hypothetical protein YP_001487959.1 2754046 R 315750 CDS YP_001487960.1 157693498 5622038 complement(2754157..2754252) 1 NC_009848.1 hypothetical protein 2754252 5622038 BPUM_2744 Bacillus pumilus SAFR-032 hypothetical protein YP_001487960.1 2754157 R 315750 CDS YP_001487961.1 157693499 5622039 complement(2754320..2755534) 1 NC_009848.1 hypothetical protein 2755534 5622039 BPUM_2745 Bacillus pumilus SAFR-032 hypothetical protein YP_001487961.1 2754320 R 315750 CDS YP_001487962.1 157693500 5622040 complement(2755874..2756047) 1 NC_009848.1 hypothetical protein 2756047 5622040 BPUM_2746 Bacillus pumilus SAFR-032 hypothetical protein YP_001487962.1 2755874 R 315750 CDS YP_001487963.1 157693501 5622041 complement(2756044..2756373) 1 NC_009848.1 hypothetical protein 2756373 5622041 BPUM_2747 Bacillus pumilus SAFR-032 hypothetical protein YP_001487963.1 2756044 R 315750 CDS YP_001487964.1 157693502 5622042 complement(2756383..2757261) 1 NC_009848.1 hypothetical protein 2757261 5622042 BPUM_2748 Bacillus pumilus SAFR-032 hypothetical protein YP_001487964.1 2756383 R 315750 CDS YP_001487965.1 157693503 5622043 complement(2757276..2757659) 1 NC_009848.1 hypothetical protein 2757659 5622043 BPUM_2749 Bacillus pumilus SAFR-032 hypothetical protein YP_001487965.1 2757276 R 315750 CDS YP_001487966.1 157693504 5622044 complement(2757671..2758594) 1 NC_009848.1 hypothetical protein 2758594 xkdU 5622044 xkdU Bacillus pumilus SAFR-032 hypothetical protein YP_001487966.1 2757671 R 315750 CDS YP_001487967.1 157693505 5622045 complement(2758578..2759627) 1 NC_009848.1 bacteriophage baseplate assembly protein J 2759627 xkdT 5622045 xkdT Bacillus pumilus SAFR-032 bacteriophage baseplate assembly protein J YP_001487967.1 2758578 R 315750 CDS YP_001487968.1 157693506 5622046 complement(2759620..2760042) 1 NC_009848.1 hypothetical protein 2760042 xkdS 5622046 xkdS Bacillus pumilus SAFR-032 hypothetical protein YP_001487968.1 2759620 R 315750 CDS YP_001487969.1 157693507 5622047 complement(2760057..2760323) 1 NC_009848.1 hypothetical protein 2760323 xkdR 5622047 xkdR Bacillus pumilus SAFR-032 hypothetical protein YP_001487969.1 2760057 R 315750 CDS YP_001487970.1 157693508 5622048 complement(2760320..2761330) 1 NC_009848.1 XkdQ; hypothetical protein 2761330 yqbQ 5622048 yqbQ Bacillus pumilus SAFR-032 hypothetical protein YP_001487970.1 2760320 R 315750 CDS YP_001487971.1 157693509 5622049 complement(2761342..2762010) 1 NC_009848.1 hypothetical protein 2762010 xkdP 5622049 xkdP Bacillus pumilus SAFR-032 hypothetical protein YP_001487971.1 2761342 R 315750 CDS YP_001487972.1 157693510 5622050 complement(2762003..2766136) 1 NC_009848.1 hypothetical protein 2766136 xkdO 5622050 xkdO Bacillus pumilus SAFR-032 hypothetical protein YP_001487972.1 2762003 R 315750 CDS YP_001487973.1 157693511 5622051 complement(2766137..2766292) 1 NC_009848.1 hypothetical protein 2766292 xkdN2 5622051 xkdN2 Bacillus pumilus SAFR-032 hypothetical protein YP_001487973.1 2766137 R 315750 CDS YP_001487974.1 157693512 5622052 complement(2766316..2766756) 1 NC_009848.1 hypothetical protein 2766756 xkdN1 5622052 xkdN1 Bacillus pumilus SAFR-032 hypothetical protein YP_001487974.1 2766316 R 315750 CDS YP_001487976.1 157693514 5622054 complement(2767284..2767727) 1 NC_009848.1 hypothetical protein 2767727 xkdM 5622054 xkdM Bacillus pumilus SAFR-032 hypothetical protein YP_001487976.1 2767284 R 315750 CDS YP_001487977.1 157693515 5622055 complement(2767729..2769075) 1 NC_009848.1 hypothetical protein 2769075 xkdK 5622055 xkdK Bacillus pumilus SAFR-032 hypothetical protein YP_001487977.1 2767729 R 315750 CDS YP_001487978.1 157693516 5622056 complement(2769079..2769291) 1 NC_009848.1 hypothetical protein 2769291 5622056 BPUM_2762 Bacillus pumilus SAFR-032 hypothetical protein YP_001487978.1 2769079 R 315750 CDS YP_001487979.1 157693517 5622057 complement(2769278..2769733) 1 NC_009848.1 XkdJ; hypothetical protein 2769733 yqbJ 5622057 yqbJ Bacillus pumilus SAFR-032 hypothetical protein YP_001487979.1 2769278 R 315750 CDS YP_001487980.1 157693518 5622058 complement(2769738..2770235) 1 NC_009848.1 XkdI; hypothetical protein 2770235 yqbI 5622058 yqbI Bacillus pumilus SAFR-032 hypothetical protein YP_001487980.1 2769738 R 315750 CDS YP_001487981.1 157693519 5622059 complement(2770232..2770588) 1 NC_009848.1 hypothetical protein 2770588 yqbH 5622059 yqbH Bacillus pumilus SAFR-032 hypothetical protein YP_001487981.1 2770232 R 315750 CDS YP_001487982.1 157693520 5622060 complement(2770585..2770968) 1 NC_009848.1 hypothetical protein 2770968 yqbG 5622060 yqbG Bacillus pumilus SAFR-032 hypothetical protein YP_001487982.1 2770585 R 315750 CDS YP_001487983.1 157693521 5622061 complement(2770982..2771905) 1 NC_009848.1 hypothetical protein 2771905 xkdG 5622061 xkdG Bacillus pumilus SAFR-032 hypothetical protein YP_001487983.1 2770982 R 315750 CDS YP_001487984.1 157693522 5622062 complement(2771928..2773016) 1 NC_009848.1 XkdF; hypothetical protein 2773016 yqbD 5622062 yqbD Bacillus pumilus SAFR-032 hypothetical protein YP_001487984.1 2771928 R 315750 CDS YP_001487985.1 157693523 5622063 complement(2773055..2774512) 1 NC_009848.1 XkdE; capsid portal protein 2774512 yqbA 5622063 yqbA Bacillus pumilus SAFR-032 capsid portal protein YP_001487985.1 2773055 R 315750 CDS YP_001487986.1 157693524 5622064 complement(2774509..2775822) 1 NC_009848.1 terminase large subunit 2775822 yqaT 5622064 yqaT Bacillus pumilus SAFR-032 terminase large subunit YP_001487986.1 2774509 R 315750 CDS YP_001487987.1 157693525 5622065 complement(2775819..2776463) 1 NC_009848.1 terminase small subunit 2776463 yqaS 5622065 yqaS Bacillus pumilus SAFR-032 terminase small subunit YP_001487987.1 2775819 R 315750 CDS YP_001487988.1 157693526 5622066 complement(2776616..2777134) 1 NC_009848.1 Positive regulatory protein that acts at the late promoter PL; positive control sigma-like factor 2777134 xpf 5622066 xpf Bacillus pumilus SAFR-032 positive control sigma-like factor YP_001487988.1 2776616 R 315750 CDS YP_001487989.1 157693527 5622067 complement(2777260..2777466) 1 NC_009848.1 hypothetical protein 2777466 yqaO 5622067 yqaO Bacillus pumilus SAFR-032 hypothetical protein YP_001487989.1 2777260 R 315750 CDS YP_001487990.1 157693528 5622068 complement(2777479..2777865) 1 NC_009848.1 hypothetical protein 2777865 yqaN 5622068 yqaN Bacillus pumilus SAFR-032 hypothetical protein YP_001487990.1 2777479 R 315750 CDS YP_001487991.1 157693529 5622069 complement(2777916..2778158) 1 NC_009848.1 hypothetical protein 2778158 5622069 BPUM_2775 Bacillus pumilus SAFR-032 hypothetical protein YP_001487991.1 2777916 R 315750 CDS YP_001487992.1 157693530 5622070 complement(2778285..2778548) 1 NC_009848.1 hypothetical protein 2778548 5622070 BPUM_2776 Bacillus pumilus SAFR-032 hypothetical protein YP_001487992.1 2778285 R 315750 CDS YP_001487993.1 157693531 5622071 2778707..2779084 1 NC_009848.1 transcriptional regulator 2779084 xre 5622071 xre Bacillus pumilus SAFR-032 transcriptional regulator YP_001487993.1 2778707 D 315750 CDS YP_001487994.1 157693532 5622072 2779282..2779632 1 NC_009848.1 hypothetical protein 2779632 5622072 BPUM_2778 Bacillus pumilus SAFR-032 hypothetical protein YP_001487994.1 2779282 D 315750 CDS YP_001487995.1 157693533 5622073 2779837..2780832 1 NC_009848.1 catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine; biotin synthase 2780832 bioB 5622073 bioB Bacillus pumilus SAFR-032 biotin synthase YP_001487995.1 2779837 D 315750 CDS YP_001487996.1 157693534 5622074 complement(2780874..2781347) 1 NC_009848.1 hypothetical protein 2781347 5622074 BPUM_2780 Bacillus pumilus SAFR-032 hypothetical protein YP_001487996.1 2780874 R 315750 CDS YP_001487997.1 157693535 5622076 complement(2783045..2783923) 1 NC_009848.1 BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase 2783923 uppP 5622076 uppP Bacillus pumilus SAFR-032 undecaprenyl pyrophosphate phosphatase YP_001487997.1 2783045 R 315750 CDS YP_001487998.1 157693536 5622077 complement(2784006..2785148) 1 NC_009848.1 hypothetical protein 2785148 yubA 5622077 yubA Bacillus pumilus SAFR-032 hypothetical protein YP_001487998.1 2784006 R 315750 CDS YP_001487999.1 157693537 5622078 complement(2785214..2785606) 1 NC_009848.1 hypothetical protein 2785606 5622078 BPUM_2784 Bacillus pumilus SAFR-032 hypothetical protein YP_001487999.1 2785214 R 315750 CDS YP_001488000.1 157693538 5622079 2785808..2786791 1 NC_009848.1 YulF; dehydrogenase 2786791 5622079 BPUM_2785 Bacillus pumilus SAFR-032 dehydrogenase YP_001488000.1 2785808 D 315750 CDS YP_001488001.1 157693539 5622080 complement(2786875..2787399) 1 NC_009848.1 C56 family peptidase 2787399 5622080 BPUM_2786 Bacillus pumilus SAFR-032 C56 family peptidase YP_001488001.1 2786875 R 315750 CDS YP_001488002.1 157693540 5622081 complement(2787490..2789478) 1 NC_009848.1 sensor histidine kinase 2789478 5622081 BPUM_2787 Bacillus pumilus SAFR-032 sensor histidine kinase YP_001488002.1 2787490 R 315750 CDS YP_001488003.1 157693541 5622082 complement(2789644..2791620) 1 NC_009848.1 sensor histidine kinase 2791620 5622082 BPUM_2788 Bacillus pumilus SAFR-032 sensor histidine kinase YP_001488003.1 2789644 R 315750 CDS YP_001488004.1 157693542 5622083 complement(2791798..2793789) 1 NC_009848.1 methyl-accepting chemotaxis protein 2793789 5622083 BPUM_2789 Bacillus pumilus SAFR-032 methyl-accepting chemotaxis protein YP_001488004.1 2791798 R 315750 CDS YP_001488005.1 157693543 5622084 complement(2793915..2795906) 1 NC_009848.1 methyl-accepting chemotaxis protein 2795906 5622084 BPUM_2790 Bacillus pumilus SAFR-032 methyl-accepting chemotaxis protein YP_001488005.1 2793915 R 315750 CDS YP_001488006.1 157693544 5622085 complement(2795932..2796033) 1 NC_009848.1 hypothetical protein 2796033 5622085 BPUM_2791 Bacillus pumilus SAFR-032 hypothetical protein YP_001488006.1 2795932 R 315750 CDS YP_001488007.1 157693545 5622086 2796063..2796803 1 NC_009848.1 involved in assembly of spore coat proteins such as GerQ by catalyzing epsilon-(gamma-glutamyl)lysine cross links; transglutaminase 2796803 tgl 5622086 tgl Bacillus pumilus SAFR-032 transglutaminase YP_001488007.1 2796063 D 315750 CDS YP_001488008.1 157693546 5622087 complement(2796825..2797073) 1 NC_009848.1 hypothetical protein 2797073 5622087 BPUM_2793 Bacillus pumilus SAFR-032 hypothetical protein YP_001488008.1 2796825 R 315750 CDS YP_001488009.1 157693547 5622088 complement(2797098..2798129) 1 NC_009848.1 2-nitropropane dioxygenase 2798129 5622088 BPUM_2794 Bacillus pumilus SAFR-032 2-nitropropane dioxygenase YP_001488009.1 2797098 R 315750 CDS YP_001488010.1 157693548 5622089 complement(2798146..2798547) 1 NC_009848.1 hypothetical protein 2798547 5622089 BPUM_2795 Bacillus pumilus SAFR-032 hypothetical protein YP_001488010.1 2798146 R 315750 CDS YP_001488011.1 157693549 5622090 complement(2798681..2799973) 1 NC_009848.1 YugS; HCC family HlyC/CorC transporter 2799973 5622090 BPUM_2796 Bacillus pumilus SAFR-032 HCC family HlyC/CorC transporter YP_001488011.1 2798681 R 315750 CDS YP_001488012.1 157693550 5622091 complement(2800022..2800699) 1 NC_009848.1 hypothetical protein 2800699 5622091 BPUM_2797 Bacillus pumilus SAFR-032 hypothetical protein YP_001488012.1 2800022 R 315750 CDS YP_001488013.1 157693551 5622092 complement(2800778..2801002) 1 NC_009848.1 hypothetical protein 2801002 5622092 BPUM_2798 Bacillus pumilus SAFR-032 hypothetical protein YP_001488013.1 2800778 R 315750 CDS YP_001488014.1 157693552 5622093 2801120..2802106 1 NC_009848.1 YugO; VIC family voltage gated ion channel 2802106 5622093 BPUM_2799 Bacillus pumilus SAFR-032 VIC family voltage gated ion channel YP_001488014.1 2801120 D 315750 CDS YP_001488015.1 157693553 5622094 complement(2802103..2802504) 1 NC_009848.1 hypothetical protein 2802504 yugN 5622094 yugN Bacillus pumilus SAFR-032 hypothetical protein YP_001488015.1 2802103 R 315750 CDS YP_001488016.1 157693554 5622095 complement(2802537..2802755) 1 NC_009848.1 hypothetical protein 2802755 5622095 BPUM_2801 Bacillus pumilus SAFR-032 hypothetical protein YP_001488016.1 2802537 R 315750 CDS YP_001488017.1 157693555 5622096 complement(2802868..2804223) 1 NC_009848.1 functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 2804223 pgi 5622096 pgi Bacillus pumilus SAFR-032 glucose-6-phosphate isomerase YP_001488017.1 2802868 R 315750 CDS YP_001488018.1 157693556 5622097 complement(2804351..2805523) 1 NC_009848.1 alcohol dehydrogenase 2805523 yugK 5622097 yugK Bacillus pumilus SAFR-032 alcohol dehydrogenase YP_001488018.1 2804351 R 315750 CDS YP_001488019.1 157693557 5622098 complement(2805645..2806808) 1 NC_009848.1 alcohol dehydrogenase 2806808 yugJ 5622098 yugJ Bacillus pumilus SAFR-032 alcohol dehydrogenase YP_001488019.1 2805645 R 315750 CDS YP_001488020.1 157693558 5622099 2806953..2807189 1 NC_009848.1 YuzA; hypothetical protein 2807189 5622099 BPUM_2805 Bacillus pumilus SAFR-032 hypothetical protein YP_001488020.1 2806953 D 315750 CDS YP_001488021.1 157693559 5622100 complement(2807258..2807650) 1 NC_009848.1 induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation; general stress protein 13 2807650 yugI 5622100 yugI Bacillus pumilus SAFR-032 general stress protein 13 YP_001488021.1 2807258 R 315750 CDS YP_001488022.1 157693560 5622101 complement(2807849..2809042) 1 NC_009848.1 hypothetical protein 2809042 5622101 BPUM_2807 Bacillus pumilus SAFR-032 hypothetical protein YP_001488022.1 2807849 R 315750 CDS YP_001488023.1 157693561 5622102 complement(2809043..2809543) 1 NC_009848.1 YugG; hypothetical protein 2809543 5622102 BPUM_2808 Bacillus pumilus SAFR-032 hypothetical protein YP_001488023.1 2809043 R 315750 CDS YP_001488024.1 157693562 5622103 2809720..2810544 1 NC_009848.1 YugF; alpha/beta hydrolase 2810544 5622103 BPUM_2809 Bacillus pumilus SAFR-032 alpha/beta hydrolase YP_001488024.1 2809720 D 315750 CDS YP_001488025.1 157693563 5622104 complement(2810541..2810801) 1 NC_009848.1 hypothetical protein 2810801 yugE 5622104 yugE Bacillus pumilus SAFR-032 hypothetical protein YP_001488025.1 2810541 R 315750 CDS YP_001488026.1 157693564 5622105 2810885..2812060 1 NC_009848.1 aminotransferase 2812060 5622105 BPUM_2811 Bacillus pumilus SAFR-032 aminotransferase YP_001488026.1 2810885 D 315750 CDS YP_001488027.1 157693565 5622106 2812194..2813486 1 NC_009848.1 sensor histidine kinase 2813486 5622106 BPUM_2812 Bacillus pumilus SAFR-032 sensor histidine kinase YP_001488027.1 2812194 D 315750 CDS YP_001488028.1 157693566 5622107 complement(2813487..2813666) 1 NC_009848.1 hypothetical protein 2813666 5622107 BPUM_2813 Bacillus pumilus SAFR-032 hypothetical protein YP_001488028.1 2813487 R 315750 CDS YP_001488029.1 157693567 5622108 2813758..2814150 1 NC_009848.1 kinase associated protein B 2814150 kapB 5622108 kapB Bacillus pumilus SAFR-032 kinase associated protein B YP_001488029.1 2813758 D 315750 CDS YP_001488030.1 157693568 5622109 complement(2814147..2814767) 1 NC_009848.1 inhibitor of the KinA pathway of sporulation; sporulation inhibitor KapD 2814767 kapD 5622109 kapD Bacillus pumilus SAFR-032 sporulation inhibitor KapD YP_001488030.1 2814147 R 315750 CDS YP_001488031.1 157693569 5622110 2814974..2816161 1 NC_009848.1 major facilitator superfamily transporter 2816161 5622110 BPUM_2816 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001488031.1 2814974 D 315750 CDS YP_001488032.1 157693570 5622111 2816270..2818171 1 NC_009848.1 penicillin binding protein 4 2818171 pbpD 5622111 pbpD Bacillus pumilus SAFR-032 penicillin binding protein 4 YP_001488032.1 2816270 D 315750 CDS YP_001488033.1 157693571 5622112 2818190..2818600 1 NC_009848.1 thiol-disulfide dehydrogenase 2818600 5622112 BPUM_2818 Bacillus pumilus SAFR-032 thiol-disulfide dehydrogenase YP_001488033.1 2818190 D 315750 CDS YP_001488034.1 157693572 5622113 complement(2818645..2819202) 1 NC_009848.1 hypothetical protein 2819202 5622113 BPUM_2819 Bacillus pumilus SAFR-032 hypothetical protein YP_001488034.1 2818645 R 315750 CDS YP_001488035.1 157693573 5622114 2819389..2820990 1 NC_009848.1 C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS 2820990 5622114 BPUM_2820 Bacillus pumilus SAFR-032 sensory histidine kinase DcuS YP_001488035.1 2819389 D 315750 CDS YP_001488036.1 157693574 5622115 2820983..2821690 1 NC_009848.1 response regulator 2821690 5622115 BPUM_2821 Bacillus pumilus SAFR-032 response regulator YP_001488036.1 2820983 D 315750 CDS YP_001488037.1 157693575 5622116 2821692..2821850 1 NC_009848.1 hypothetical protein 2821850 5622116 BPUM_2822 Bacillus pumilus SAFR-032 hypothetical protein YP_001488037.1 2821692 D 315750 CDS YP_001488038.1 157693576 5622117 2822085..2823167 1 NC_009848.1 ABC transporter ATP-binding protein 2823167 5622117 BPUM_2823 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488038.1 2822085 D 315750 CDS YP_001488039.1 157693577 5622118 2823327..2824862 1 NC_009848.1 ABC transporter ATP-binding protein 2824862 5622118 BPUM_2824 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488039.1 2823327 D 315750 CDS YP_001488040.1 157693578 5622119 2824855..2825901 1 NC_009848.1 ABC transporter ATP-binding protein 2825901 5622119 BPUM_2825 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488040.1 2824855 D 315750 CDS YP_001488041.1 157693579 5622120 2825902..2826861 1 NC_009848.1 ABC transporter ATP-binding protein 2826861 5622120 BPUM_2826 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488041.1 2825902 D 315750 CDS YP_001488042.1 157693580 5622121 2827037..2828374 1 NC_009848.1 CCS family citrate:cation symporter 2828374 5622121 BPUM_2827 Bacillus pumilus SAFR-032 CCS family citrate:cation symporter YP_001488042.1 2827037 D 315750 CDS YP_001488043.1 157693581 5622122 complement(2828446..2828655) 1 NC_009848.1 hypothetical protein 2828655 yufS 5622122 yufS Bacillus pumilus SAFR-032 hypothetical protein YP_001488043.1 2828446 R 315750 CDS YP_001488044.1 157693582 5622123 2828875..2831280 1 NC_009848.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit A 2831280 mrpA 5622123 mrpA Bacillus pumilus SAFR-032 monovalent cation/H+ antiporter subunit A YP_001488044.1 2828875 D 315750 CDS YP_001488045.1 157693583 5622124 2831277..2831708 1 NC_009848.1 subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in the case of S. meliloti it was proved to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit B 2831708 mrpB 5622124 mrpB Bacillus pumilus SAFR-032 putative monovalent cation/H+ antiporter subunit B YP_001488045.1 2831277 D 315750 CDS YP_001488046.1 157693584 5622125 2831708..2832049 1 NC_009848.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 2832049 mrpC 5622125 mrpC Bacillus pumilus SAFR-032 putative monovalent cation/H+ antiporter subunit C YP_001488046.1 2831708 D 315750 CDS YP_001488047.1 157693585 5622126 2832033..2833520 1 NC_009848.1 subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 2833520 mrpD 5622126 mrpD Bacillus pumilus SAFR-032 putative monovalent cation/H+ antiporter subunit D YP_001488047.1 2832033 D 315750 CDS YP_001488048.1 157693586 5622127 2833527..2834006 1 NC_009848.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit E 2834006 mrpE 5622127 mrpE Bacillus pumilus SAFR-032 putative monovalent cation/H+ antiporter subunit E YP_001488048.1 2833527 D 315750 CDS YP_001488049.1 157693587 5622128 2834006..2834287 1 NC_009848.1 subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit F 2834287 mrpF 5622128 mrpF Bacillus pumilus SAFR-032 putative monovalent cation/H+ antiporter subunit F YP_001488049.1 2834006 D 315750 CDS YP_001488050.1 157693588 5622129 2834271..2834645 1 NC_009848.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G 2834645 mrpG 5622129 mrpG Bacillus pumilus SAFR-032 putative monovalent cation/H+ antiporter subunit G YP_001488050.1 2834271 D 315750 CDS YP_001488051.1 157693589 5622130 complement(2834731..2835120) 1 NC_009848.1 thioesterase 2835120 5622130 BPUM_2836 Bacillus pumilus SAFR-032 thioesterase YP_001488051.1 2834731 R 315750 CDS YP_001488052.1 157693590 5622131 complement(2835144..2835785) 1 NC_009848.1 response regulator ComA 2835785 comA 5622131 comA Bacillus pumilus SAFR-032 response regulator ComA YP_001488052.1 2835144 R 315750 CDS YP_001488053.1 157693591 5622132 complement(2835866..2838172) 1 NC_009848.1 sensor histidine kinase ComP 2838172 comP 5622132 comP Bacillus pumilus SAFR-032 sensor histidine kinase ComP YP_001488053.1 2835866 R 315750 CDS YP_001488054.1 157693592 5622133 complement(2838186..2838356) 1 NC_009848.1 competence pheromone precursor ComX 2838356 comX 5622133 comX Bacillus pumilus SAFR-032 competence pheromone precursor ComX YP_001488054.1 2838186 R 315750 CDS YP_001488055.1 157693593 5622134 complement(2838334..2839257) 1 NC_009848.1 hypothetical protein 2839257 5622134 BPUM_2840 Bacillus pumilus SAFR-032 hypothetical protein YP_001488055.1 2838334 R 315750 CDS YP_001488056.1 157693594 5622135 complement(2839409..2839549) 1 NC_009848.1 degradation enzyme regulation protein DegQ 2839549 degQ 5622135 degQ Bacillus pumilus SAFR-032 degradation enzyme regulation protein DegQ YP_001488056.1 2839409 R 315750 CDS YP_001488057.1 157693595 5622136 2840055..2840408 1 NC_009848.1 YuzC; hypothetical protein 2840408 5622136 BPUM_2842 Bacillus pumilus SAFR-032 hypothetical protein YP_001488057.1 2840055 D 315750 CDS YP_001488058.1 157693596 5622137 complement(2840440..2841666) 1 NC_009848.1 metal-dependent hydrolase 2841666 5622137 BPUM_2843 Bacillus pumilus SAFR-032 metal-dependent hydrolase YP_001488058.1 2840440 R 315750 CDS YP_001488059.1 157693597 5622138 complement(2841806..2843275) 1 NC_009848.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 2843275 pncB 5622138 pncB Bacillus pumilus SAFR-032 nicotinate phosphoribosyltransferase YP_001488059.1 2841806 R 315750 CDS YP_001488060.1 157693598 5622139 complement(2843293..2843844) 1 NC_009848.1 nicotinamidase 2843844 pncA 5622139 pncA Bacillus pumilus SAFR-032 nicotinamidase YP_001488060.1 2843293 R 315750 CDS YP_001488061.1 157693599 5622140 complement(2843905..2844312) 1 NC_009848.1 hypothetical protein 2844312 5622140 BPUM_2846 Bacillus pumilus SAFR-032 hypothetical protein YP_001488061.1 2843905 R 315750 CDS YP_001488062.1 157693600 5622141 complement(2844339..2844677) 1 NC_009848.1 YueF; hypothetical protein 2844677 5622141 BPUM_2847 Bacillus pumilus SAFR-032 hypothetical protein YP_001488062.1 2844339 R 315750 CDS YP_001488063.1 157693601 5622142 complement(2844684..2844905) 1 NC_009848.1 spore germination protein YueG1 2844905 yueG1 5622142 yueG1 Bacillus pumilus SAFR-032 spore germination protein YueG1 YP_001488063.1 2844684 R 315750 CDS YP_001488064.1 157693602 5622143 complement(2845005..2845226) 1 NC_009848.1 spore germination protein YueG2 2845226 yueG2 5622143 yueG2 Bacillus pumilus SAFR-032 spore germination protein YueG2 YP_001488064.1 2845005 R 315750 CDS YP_001488065.1 157693603 5622144 complement(2845293..2846396) 1 NC_009848.1 hypothetical protein 2846396 5622144 BPUM_2850 Bacillus pumilus SAFR-032 hypothetical protein YP_001488065.1 2845293 R 315750 CDS YP_001488066.1 157693604 5622145 complement(2846582..2846818) 1 NC_009848.1 hypothetical protein 2846818 5622145 BPUM_2851 Bacillus pumilus SAFR-032 hypothetical protein YP_001488066.1 2846582 R 315750 CDS YP_001488067.1 157693605 5622146 2847001..2848485 1 NC_009848.1 hypothetical protein 2848485 5622146 BPUM_2852 Bacillus pumilus SAFR-032 hypothetical protein YP_001488067.1 2847001 D 315750 CDS YP_001488068.1 157693606 5622147 complement(2848482..2849015) 1 NC_009848.1 metal-dependent phosphohydrolase 2849015 5622147 BPUM_2853 Bacillus pumilus SAFR-032 metal-dependent phosphohydrolase YP_001488068.1 2848482 R 315750 CDS YP_001488069.1 157693607 5622148 complement(2849161..2849853) 1 NC_009848.1 short chain dehydrogenase 2849853 5622148 BPUM_2854 Bacillus pumilus SAFR-032 short chain dehydrogenase YP_001488069.1 2849161 R 315750 CDS YP_001488070.1 157693608 5622149 complement(2850003..2850488) 1 NC_009848.1 hypothetical protein 2850488 5622149 BPUM_2855 Bacillus pumilus SAFR-032 hypothetical protein YP_001488070.1 2850003 R 315750 CDS YP_001488071.1 157693609 5622150 complement(2850478..2853375) 1 NC_009848.1 hypothetical protein 2853375 5622150 BPUM_2856 Bacillus pumilus SAFR-032 hypothetical protein YP_001488071.1 2850478 R 315750 CDS YP_001488072.1 157693610 5622151 complement(2853372..2857847) 1 NC_009848.1 FtsK/SpoIIIE family cell division protein YukA 2857847 5622151 BPUM_2857 Bacillus pumilus SAFR-032 FtsK/SpoIIIE family cell division protein YukA YP_001488072.1 2853372 R 315750 CDS YP_001488073.1 157693611 5622152 complement(2857899..2859215) 1 NC_009848.1 hypothetical protein 2859215 5622152 BPUM_2858 Bacillus pumilus SAFR-032 hypothetical protein YP_001488073.1 2857899 R 315750 CDS YP_001488074.1 157693612 5622153 complement(2859230..2859469) 1 NC_009848.1 hypothetical protein 2859469 yukD 5622153 yukD Bacillus pumilus SAFR-032 hypothetical protein YP_001488074.1 2859230 R 315750 CDS YP_001488075.1 157693613 5622154 complement(2859565..2859858) 1 NC_009848.1 hypothetical protein 2859858 5622154 BPUM_2860 Bacillus pumilus SAFR-032 hypothetical protein YP_001488075.1 2859565 R 315750 CDS YP_001488076.1 157693614 5622155 2860263..2861492 1 NC_009848.1 hypothetical protein 2861492 5622155 BPUM_2861 Bacillus pumilus SAFR-032 hypothetical protein YP_001488076.1 2860263 D 315750 CDS YP_001488077.1 157693615 5622156 2861603..2862739 1 NC_009848.1 stage V sporulation protein N SpoVN; alanine dehydrogenase 2862739 ald 5622156 ald Bacillus pumilus SAFR-032 alanine dehydrogenase YP_001488077.1 2861603 D 315750 CDS YP_001488078.1 157693616 5622157 2862855..2863451 1 NC_009848.1 YuiG; biotin synthase 2863451 bioY 5622157 bioY Bacillus pumilus SAFR-032 biotin synthase YP_001488078.1 2862855 D 315750 CDS YP_001488079.1 157693617 5622158 complement(2863509..2864285) 1 NC_009848.1 stage 0 sporulation control protein M 2864285 spo0M 5622158 spo0M Bacillus pumilus SAFR-032 stage 0 sporulation control protein M YP_001488079.1 2863509 R 315750 CDS YP_001488080.1 157693618 5622159 complement(2864463..2865791) 1 NC_009848.1 YuiF; GntP family gluconate:proton (H+) symporter 2865791 5622159 BPUM_2865 Bacillus pumilus SAFR-032 GntP family gluconate:proton (H+) symporter YP_001488080.1 2864463 R 315750 CDS YP_001488081.1 157693619 5622160 complement(2865933..2867423) 1 NC_009848.1 catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 2867423 pepA 5622160 pepA Bacillus pumilus SAFR-032 leucyl aminopeptidase YP_001488081.1 2865933 R 315750 CDS YP_001488082.1 157693620 5622161 2867463..2867576 1 NC_009848.1 hypothetical protein 2867576 5622161 BPUM_2867 Bacillus pumilus SAFR-032 hypothetical protein YP_001488082.1 2867463 D 315750 CDS YP_001488083.1 157693621 5622162 2867749..2868225 1 NC_009848.1 YuiD; acid phosphatase/vanadium-dependent haloperoxidase 2868225 5622162 BPUM_2868 Bacillus pumilus SAFR-032 acid phosphatase/vanadium-dependent haloperoxidase YP_001488083.1 2867749 D 315750 CDS YP_001488084.1 157693622 5622163 complement(2868269..2868913) 1 NC_009848.1 YuiC; lipoprotein 2868913 5622163 BPUM_2869 Bacillus pumilus SAFR-032 lipoprotein YP_001488084.1 2868269 R 315750 CDS YP_001488085.1 157693623 5622164 complement(2869014..2869334) 1 NC_009848.1 YuiB; hypothetical protein 2869334 5622164 BPUM_2870 Bacillus pumilus SAFR-032 hypothetical protein YP_001488085.1 2869014 R 315750 CDS YP_001488086.1 157693624 5622165 complement(2869416..2869643) 1 NC_009848.1 YuiA; hypothetical protein 2869643 5622165 BPUM_2871 Bacillus pumilus SAFR-032 hypothetical protein YP_001488086.1 2869416 R 315750 CDS YP_001488087.1 157693625 5622166 complement(2869672..2870883) 1 NC_009848.1 NADH dehydrogenase 2870883 5622166 BPUM_2872 Bacillus pumilus SAFR-032 NADH dehydrogenase YP_001488087.1 2869672 R 315750 CDS YP_001488088.1 157693626 5622167 2871280..2872278 1 NC_009848.1 YumC; ferredoxin--NAD(+) reductase 2872278 5622167 BPUM_2873 Bacillus pumilus SAFR-032 ferredoxin--NAD(+) reductase YP_001488088.1 2871280 D 315750 CDS YP_001488089.1 157693627 5622168 complement(2872325..2872531) 1 NC_009848.1 hypothetical protein 2872531 5622168 BPUM_2874 Bacillus pumilus SAFR-032 hypothetical protein YP_001488089.1 2872325 R 315750 CDS YP_001488090.1 157693628 5622169 2872727..2873143 1 NC_009848.1 hypothetical protein 2873143 5622169 BPUM_2875 Bacillus pumilus SAFR-032 hypothetical protein YP_001488090.1 2872727 D 315750 CDS YP_001488091.1 157693629 5622170 complement(2873264..2873626) 1 NC_009848.1 iron sulfur assembly protein 2873626 5622170 BPUM_2876 Bacillus pumilus SAFR-032 iron sulfur assembly protein YP_001488091.1 2873264 R 315750 CDS YP_001488092.1 157693630 5622171 complement(2873700..2874554) 1 NC_009848.1 involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 2874554 dapF 5622171 dapF Bacillus pumilus SAFR-032 diaminopimelate epimerase YP_001488092.1 2873700 R 315750 CDS YP_001488093.1 157693631 5622172 2874573..2874737 1 NC_009848.1 hypothetical protein 2874737 5622172 BPUM_2878 Bacillus pumilus SAFR-032 hypothetical protein YP_001488093.1 2874573 D 315750 CDS YP_001488094.1 157693632 5622173 complement(2874825..2875061) 1 NC_009848.1 YuzB; hypothetical protein 2875061 5622173 BPUM_2879 Bacillus pumilus SAFR-032 hypothetical protein YP_001488094.1 2874825 R 315750 CDS YP_001488095.1 157693633 5622174 2875063..2875230 1 NC_009848.1 hypothetical protein 2875230 5622174 BPUM_2880 Bacillus pumilus SAFR-032 hypothetical protein YP_001488095.1 2875063 D 315750 CDS YP_001488096.1 157693634 5622175 2875317..2876384 1 NC_009848.1 YutJ; NADH dehydrogenase 2876384 5622175 BPUM_2881 Bacillus pumilus SAFR-032 NADH dehydrogenase YP_001488096.1 2875317 D 315750 CDS YP_001488097.1 157693635 5622176 complement(2876434..2876664) 1 NC_009848.1 hypothetical protein 2876664 5622176 BPUM_2882 Bacillus pumilus SAFR-032 hypothetical protein YP_001488097.1 2876434 R 315750 CDS YP_001488098.1 157693636 5622177 complement(2876765..2877094) 1 NC_009848.1 YuzD; hypothetical protein 2877094 5622177 BPUM_2883 Bacillus pumilus SAFR-032 hypothetical protein YP_001488098.1 2876765 R 315750 CDS YP_001488099.1 157693637 5622178 2877279..2877515 1 NC_009848.1 YutI; iron-sulfur assembly protein 2877515 5622178 BPUM_2884 Bacillus pumilus SAFR-032 iron-sulfur assembly protein YP_001488099.1 2877279 D 315750 CDS YP_001488100.1 157693638 5622179 complement(2877559..2879529) 1 NC_009848.1 Dipeptidyl aminopeptidase/acylaminoacyl-peptidase Dap2; peptidase 2879529 5622179 BPUM_2885 Bacillus pumilus SAFR-032 peptidase YP_001488100.1 2877559 R 315750 CDS YP_001488101.1 157693639 5622180 complement(2879833..2880765) 1 NC_009848.1 catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 2880765 thrB 5622180 thrB Bacillus pumilus SAFR-032 homoserine kinase YP_001488101.1 2879833 R 315750 CDS YP_001488102.1 157693640 5622181 complement(2880762..2881823) 1 NC_009848.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 2881823 thrC1 5622181 thrC1 Bacillus pumilus SAFR-032 threonine synthase YP_001488102.1 2880762 R 315750 CDS YP_001488103.1 157693641 5622182 complement(2881823..2883124) 1 NC_009848.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 2883124 thrA 5622182 thrA Bacillus pumilus SAFR-032 homoserine dehydrogenase YP_001488103.1 2881823 R 315750 CDS YP_001488104.1 157693642 5622183 complement(2883333..2884316) 1 NC_009848.1 D-isomer specific 2-hydroxyacid dehydrogenase 2884316 5622183 BPUM_2889 Bacillus pumilus SAFR-032 D-isomer specific 2-hydroxyacid dehydrogenase YP_001488104.1 2883333 R 315750 CDS YP_001488105.1 157693643 5622184 complement(2884402..2885430) 1 NC_009848.1 YutH; spore coat protein 2885430 cotS 5622184 cotS Bacillus pumilus SAFR-032 spore coat protein YP_001488105.1 2884402 R 315750 CDS YP_001488106.1 157693644 5622185 2885545..2886045 1 NC_009848.1 YutG; phosphatidylglycerophosphatase 2886045 pgpA 5622185 pgpA Bacillus pumilus SAFR-032 phosphatidylglycerophosphatase YP_001488106.1 2885545 D 315750 CDS YP_001488107.1 157693645 5622186 complement(2886087..2886857) 1 NC_009848.1 YutF; HAD family hydrolase 2886857 5622186 BPUM_2892 Bacillus pumilus SAFR-032 HAD family hydrolase YP_001488107.1 2886087 R 315750 CDS YP_001488108.1 157693646 5622187 complement(2886879..2887313) 1 NC_009848.1 YutE; hypothetical protein 2887313 5622187 BPUM_2893 Bacillus pumilus SAFR-032 hypothetical protein YP_001488108.1 2886879 R 315750 CDS YP_001488109.1 157693647 5622188 complement(2887333..2887608) 1 NC_009848.1 YutD; hypothetical protein 2887608 5622188 BPUM_2894 Bacillus pumilus SAFR-032 hypothetical protein YP_001488109.1 2887333 R 315750 CDS YP_001488110.1 157693648 5622189 2887729..2888364 1 NC_009848.1 YutC; lipoprotein 2888364 5622189 BPUM_2895 Bacillus pumilus SAFR-032 lipoprotein YP_001488110.1 2887729 D 315750 CDS YP_001488111.1 157693649 5622190 complement(2888404..2889300) 1 NC_009848.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 2889300 lipA 5622190 lipA Bacillus pumilus SAFR-032 lipoyl synthase YP_001488111.1 2888404 R 315750 CDS YP_001488112.1 157693650 5622191 2889591..2890571 1 NC_009848.1 M23B subfamily peptidase 2890571 5622191 BPUM_2897 Bacillus pumilus SAFR-032 M23B subfamily peptidase YP_001488112.1 2889591 D 315750 CDS YP_001488113.1 157693651 5622192 complement(2890628..2890858) 1 NC_009848.1 hypothetical protein 2890858 5622192 BPUM_2898 Bacillus pumilus SAFR-032 hypothetical protein YP_001488113.1 2890628 R 315750 CDS YP_001488114.1 157693652 5622193 complement(2890985..2891755) 1 NC_009848.1 sporulation protein YunB 2891755 yunB 5622193 yunB Bacillus pumilus SAFR-032 sporulation protein YunB YP_001488114.1 2890985 R 315750 CDS YP_001488115.1 157693653 5622194 complement(2891825..2892130) 1 NC_009848.1 YunC; hypothetical protein 2892130 5622194 BPUM_2900 Bacillus pumilus SAFR-032 hypothetical protein YP_001488115.1 2891825 R 315750 CDS YP_001488116.1 157693654 5622195 complement(2892198..2893571) 1 NC_009848.1 YunD; bifunctional 5'-nucleotidase/2',3'-cyclic phosphodiesterase 2893571 ushA 5622195 ushA Bacillus pumilus SAFR-032 bifunctional 5'-nucleotidase/2',3'-cyclic phosphodiesterase YP_001488116.1 2892198 R 315750 CDS YP_001488117.1 157693655 5622196 complement(2893635..2894486) 1 NC_009848.1 YunF; hypothetical protein 2894486 5622196 BPUM_2902 Bacillus pumilus SAFR-032 hypothetical protein YP_001488117.1 2893635 R 315750 CDS YP_001488118.1 157693656 5622197 2894805..2895965 1 NC_009848.1 transcriptional regulator 2895965 5622197 BPUM_2903 Bacillus pumilus SAFR-032 transcriptional regulator YP_001488118.1 2894805 D 315750 CDS YP_001488119.1 157693657 5622198 2896030..2897190 1 NC_009848.1 hypothetical protein 2897190 5622198 BPUM_2904 Bacillus pumilus SAFR-032 hypothetical protein YP_001488119.1 2896030 D 315750 CDS YP_001488120.1 157693658 5622199 complement(2897242..2898432) 1 NC_009848.1 major facilitator superfamily multidrug:cation symporter 2898432 5622199 BPUM_2905 Bacillus pumilus SAFR-032 major facilitator superfamily multidrug:cation symporter YP_001488120.1 2897242 R 315750 CDS YP_001488121.1 157693659 5622200 complement(2898593..2899846) 1 NC_009848.1 YurG; aminotransferase 2899846 5622200 BPUM_2906 Bacillus pumilus SAFR-032 aminotransferase YP_001488121.1 2898593 R 315750 CDS YP_001488122.1 157693660 5622201 2899997..2900875 1 NC_009848.1 deoxyribonuclease I 2900875 end1 5622201 end1 Bacillus pumilus SAFR-032 deoxyribonuclease I YP_001488122.1 2899997 D 315750 CDS YP_001488123.1 157693661 5622202 complement(2900890..2901633) 1 NC_009848.1 hypothetical protein 2901633 5622202 BPUM_2908 Bacillus pumilus SAFR-032 hypothetical protein YP_001488123.1 2900890 R 315750 CDS YP_001488124.1 157693662 5622203 complement(2901656..2902693) 1 NC_009848.1 YfhA; iron ABC transporter membrane protein 2902693 5622203 BPUM_2909 Bacillus pumilus SAFR-032 iron ABC transporter membrane protein YP_001488124.1 2901656 R 315750 CDS YP_001488125.1 157693663 5622204 complement(2902686..2903702) 1 NC_009848.1 YfiZ; iron ABC transporter membrane protein 2903702 5622204 BPUM_2910 Bacillus pumilus SAFR-032 iron ABC transporter membrane protein YP_001488125.1 2902686 R 315750 CDS YP_001488126.1 157693664 5622205 complement(2903773..2904726) 1 NC_009848.1 YfiY; iron ABC transporter 2904726 5622205 BPUM_2911 Bacillus pumilus SAFR-032 iron ABC transporter YP_001488126.1 2903773 R 315750 CDS YP_001488127.1 157693665 5622206 complement(2904866..2905774) 1 NC_009848.1 lysophospholipase 2905774 5622206 BPUM_2912 Bacillus pumilus SAFR-032 lysophospholipase YP_001488127.1 2904866 R 315750 CDS YP_001488128.1 157693666 5622207 complement(2905840..2906739) 1 NC_009848.1 hydrolase 2906739 5622207 BPUM_2913 Bacillus pumilus SAFR-032 hydrolase YP_001488128.1 2905840 R 315750 CDS YP_001488129.1 157693667 5622208 complement(2907047..2907475) 1 NC_009848.1 phosphate-starvation-inducible protein PsiE 2907475 psiE 5622208 psiE Bacillus pumilus SAFR-032 phosphate-starvation-inducible protein PsiE YP_001488129.1 2907047 R 315750 CDS YP_001488130.1 157693668 5622209 complement(2907513..2908820) 1 NC_009848.1 YrkQ; sensor histidine kinase 2908820 5622209 BPUM_2915 Bacillus pumilus SAFR-032 sensor histidine kinase YP_001488130.1 2907513 R 315750 CDS YP_001488131.1 157693669 5622210 complement(2908807..2909502) 1 NC_009848.1 YrkP; response regulator 2909502 5622210 BPUM_2916 Bacillus pumilus SAFR-032 response regulator YP_001488131.1 2908807 R 315750 CDS YP_001488132.1 157693670 5622211 2909601..2909699 1 NC_009848.1 hypothetical protein 2909699 5622211 BPUM_2917 Bacillus pumilus SAFR-032 hypothetical protein YP_001488132.1 2909601 D 315750 CDS YP_001488133.1 157693671 5622212 2909755..2910963 1 NC_009848.1 YrkO; hypothetical protein 2910963 5622212 BPUM_2918 Bacillus pumilus SAFR-032 hypothetical protein YP_001488133.1 2909755 D 315750 CDS YP_001488134.1 157693672 5622213 complement(2911073..2913076) 1 NC_009848.1 hypothetical protein 2913076 5622213 BPUM_2919 Bacillus pumilus SAFR-032 hypothetical protein YP_001488134.1 2911073 R 315750 CDS YP_001488135.1 157693673 5622215 complement(2914129..2915061) 1 NC_009848.1 hypothetical protein 2915061 5622215 BPUM_2921 Bacillus pumilus SAFR-032 hypothetical protein YP_001488135.1 2914129 R 315750 CDS YP_001488136.1 157693674 5622216 2915146..2915796 1 NC_009848.1 [acyl-carrier-protein] phosphodiesterase 2915796 acpH 5622216 acpH Bacillus pumilus SAFR-032 [acyl-carrier-protein] phosphodiesterase YP_001488136.1 2915146 D 315750 CDS YP_001488137.1 157693675 5622217 complement(2915861..2917258) 1 NC_009848.1 FeS cluster assembly protein; ABC transporter ATP-binding protein 2917258 sufB 5622217 sufB Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488137.1 2915861 R 315750 CDS YP_001488138.1 157693676 5622218 complement(2917276..2917722) 1 NC_009848.1 Fe-S cluster assembly protein NifU 2917722 nifU 5622218 nifU Bacillus pumilus SAFR-032 Fe-S cluster assembly protein NifU YP_001488138.1 2917276 R 315750 CDS YP_001488139.1 157693677 5622219 complement(2917712..2918932) 1 NC_009848.1 cysteine desulfurase 2918932 csd 5622219 csd Bacillus pumilus SAFR-032 cysteine desulfurase YP_001488139.1 2917712 R 315750 CDS YP_001488140.1 157693678 5622220 complement(2918932..2920245) 1 NC_009848.1 FeS cluster assembly protein YurX; iron ABC transporter membrane protein 2920245 sufD 5622220 sufD Bacillus pumilus SAFR-032 iron ABC transporter membrane protein YP_001488140.1 2918932 R 315750 CDS YP_001488141.1 157693679 5622221 complement(2920264..2921049) 1 NC_009848.1 FeS cluster assembly protein YurY; iron ABC transporter ATP-binding protein 2921049 sufC 5622221 sufC Bacillus pumilus SAFR-032 iron ABC transporter ATP-binding protein YP_001488141.1 2920264 R 315750 CDS YP_001488142.1 157693680 5622222 complement(2921261..2921428) 1 NC_009848.1 hypothetical protein 2921428 5622222 BPUM_2928 Bacillus pumilus SAFR-032 hypothetical protein YP_001488142.1 2921261 R 315750 CDS YP_001488143.1 157693681 5622223 complement(2921614..2921982) 1 NC_009848.1 YurZ; carboxymuconolactone decarboxylase 2921982 5622223 BPUM_2929 Bacillus pumilus SAFR-032 carboxymuconolactone decarboxylase YP_001488143.1 2921614 R 315750 CDS YP_001488144.1 157693682 5622224 complement(2922087..2922908) 1 NC_009848.1 YusA; ABC transporter ATP-binding protein 2922908 5622224 BPUM_2930 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488144.1 2922087 R 315750 CDS YP_001488145.1 157693683 5622225 complement(2922923..2923591) 1 NC_009848.1 YusB; ABC transporter ATP-binding protein 2923591 5622225 BPUM_2931 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488145.1 2922923 R 315750 CDS YP_001488146.1 157693684 5622226 complement(2923584..2924609) 1 NC_009848.1 YusC; ABC transporter ATP-binding protein 2924609 5622226 BPUM_2932 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488146.1 2923584 R 315750 CDS YP_001488147.1 157693685 5622227 2924645..2924797 1 NC_009848.1 hypothetical protein 2924797 5622227 BPUM_2933 Bacillus pumilus SAFR-032 hypothetical protein YP_001488147.1 2924645 D 315750 CDS YP_001488148.1 157693686 5622228 complement(2924975..2925316) 1 NC_009848.1 YusD; hypothetical protein 2925316 5622228 BPUM_2934 Bacillus pumilus SAFR-032 hypothetical protein YP_001488148.1 2924975 R 315750 CDS YP_001488149.1 157693687 5622229 complement(2925437..2925739) 1 NC_009848.1 YusE; thioredoxin 2925739 5622229 BPUM_2935 Bacillus pumilus SAFR-032 thioredoxin YP_001488149.1 2925437 R 315750 CDS YP_001488150.1 157693688 5622230 complement(2925752..2926105) 1 NC_009848.1 TOPRIM domain-containing protein 2926105 5622230 BPUM_2936 Bacillus pumilus SAFR-032 TOPRIM domain-containing protein YP_001488150.1 2925752 R 315750 CDS YP_001488151.1 157693689 5622231 complement(2926225..2926470) 1 NC_009848.1 YusG; hypothetical protein 2926470 5622231 BPUM_2937 Bacillus pumilus SAFR-032 hypothetical protein YP_001488151.1 2926225 R 315750 CDS YP_001488152.1 157693690 5622232 complement(2926506..2926889) 1 NC_009848.1 glycine cleavage system protein H 2926889 gcvH 5622232 gcvH Bacillus pumilus SAFR-032 glycine cleavage system protein H YP_001488152.1 2926506 R 315750 CDS YP_001488153.1 157693691 5622233 complement(2926956..2927315) 1 NC_009848.1 YusI; arsenate reductase (glutaredoxin) 2927315 arsC 5622233 arsC Bacillus pumilus SAFR-032 arsenate reductase (glutaredoxin) YP_001488153.1 2926956 R 315750 CDS YP_001488154.1 157693692 5622234 complement(2927485..2929266) 1 NC_009848.1 YusJ; acyl-CoA dehydrogenase 2929266 5622234 BPUM_2940 Bacillus pumilus SAFR-032 acyl-CoA dehydrogenase YP_001488154.1 2927485 R 315750 CDS YP_001488155.1 157693693 5622235 complement(2929281..2930456) 1 NC_009848.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2930456 5622235 BPUM_2941 Bacillus pumilus SAFR-032 acetyl-CoA acetyltransferase YP_001488155.1 2929281 R 315750 CDS YP_001488156.1 157693694 5622236 complement(2930469..2932856) 1 NC_009848.1 YusL; 3-hydroxyacyl-CoA dehydrogenase 2932856 5622236 BPUM_2942 Bacillus pumilus SAFR-032 3-hydroxyacyl-CoA dehydrogenase YP_001488156.1 2930469 R 315750 CDS YP_001488157.1 157693695 5622237 2933056..2933193 1 NC_009848.1 hypothetical protein 2933193 5622237 BPUM_2943 Bacillus pumilus SAFR-032 hypothetical protein YP_001488157.1 2933056 D 315750 CDS YP_001488158.1 157693696 5622238 2933223..2933471 1 NC_009848.1 hypothetical protein 2933471 5622238 BPUM_2944 Bacillus pumilus SAFR-032 hypothetical protein YP_001488158.1 2933223 D 315750 CDS YP_001488159.1 157693697 5622239 2933484..2933831 1 NC_009848.1 YusN; hypothetical protein 2933831 5622239 BPUM_2945 Bacillus pumilus SAFR-032 hypothetical protein YP_001488159.1 2933484 D 315750 CDS YP_001488160.1 157693698 5622240 2934035..2934898 1 NC_009848.1 hypothetical protein 2934898 5622240 BPUM_2946 Bacillus pumilus SAFR-032 hypothetical protein YP_001488160.1 2934035 D 315750 CDS YP_001488161.1 157693699 5622241 2934917..2935180 1 NC_009848.1 hypothetical protein 2935180 5622241 BPUM_2947 Bacillus pumilus SAFR-032 hypothetical protein YP_001488161.1 2934917 D 315750 CDS YP_001488162.1 157693700 5622242 complement(2935225..2935479) 1 NC_009848.1 YusU; hypothetical protein 2935479 5622242 BPUM_2948 Bacillus pumilus SAFR-032 hypothetical protein YP_001488162.1 2935225 R 315750 CDS YP_001488163.1 157693701 5622243 complement(2935552..2936382) 1 NC_009848.1 YusV; iron ABC transporter 2936382 5622243 BPUM_2949 Bacillus pumilus SAFR-032 iron ABC transporter YP_001488163.1 2935552 R 315750 CDS YP_001488164.1 157693702 5622244 complement(2936531..2936977) 1 NC_009848.1 YusW; hypothetical protein 2936977 5622244 BPUM_2950 Bacillus pumilus SAFR-032 hypothetical protein YP_001488164.1 2936531 R 315750 CDS YP_001488165.1 157693703 5622245 2937092..2937934 1 NC_009848.1 YusZ; short chain dehydrogenase 2937934 5622245 BPUM_2951 Bacillus pumilus SAFR-032 short chain dehydrogenase YP_001488165.1 2937092 D 315750 CDS YP_001488166.1 157693704 5622246 complement(2937981..2939351) 1 NC_009848.1 YvtA; peptidase 2939351 5622246 BPUM_2952 Bacillus pumilus SAFR-032 peptidase YP_001488166.1 2937981 R 315750 CDS YP_001488167.1 157693705 5622247 2939688..2940365 1 NC_009848.1 response regulator 2940365 cssR 5622247 cssR Bacillus pumilus SAFR-032 response regulator YP_001488167.1 2939688 D 315750 CDS YP_001488168.1 157693706 5622248 2940362..2941693 1 NC_009848.1 sensor histidine kinase 2941693 cssS 5622248 cssS Bacillus pumilus SAFR-032 sensor histidine kinase YP_001488168.1 2940362 D 315750 CDS YP_001488169.1 157693707 5622249 complement(2941714..2941878) 1 NC_009848.1 hypothetical protein 2941878 5622249 BPUM_2955 Bacillus pumilus SAFR-032 hypothetical protein YP_001488169.1 2941714 R 315750 CDS YP_001488170.1 157693708 5622250 2942071..2942949 1 NC_009848.1 YuxN; TetR family transcriptional regulator 2942949 5622250 BPUM_2956 Bacillus pumilus SAFR-032 TetR family transcriptional regulator YP_001488170.1 2942071 D 315750 CDS YP_001488171.1 157693709 5622251 complement(2943029..2944423) 1 NC_009848.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 2944423 fumC 5622251 fumC Bacillus pumilus SAFR-032 fumarate hydratase YP_001488171.1 2943029 R 315750 CDS YP_001488172.1 157693710 5622252 complement(2944513..2944680) 1 NC_009848.1 hypothetical protein 2944680 5622252 BPUM_2958 Bacillus pumilus SAFR-032 hypothetical protein YP_001488172.1 2944513 R 315750 CDS YP_001488173.1 157693711 5622253 2944795..2946219 1 NC_009848.1 spore germination protein AA 2946219 gerAA 5622253 gerAA Bacillus pumilus SAFR-032 spore germination protein AA YP_001488173.1 2944795 D 315750 CDS YP_001488174.1 157693712 5622254 2946206..2947300 1 NC_009848.1 spore germination protein AB 2947300 gerAB 5622254 gerAB Bacillus pumilus SAFR-032 spore germination protein AB YP_001488174.1 2946206 D 315750 CDS YP_001488175.1 157693713 5622255 2947297..2948418 1 NC_009848.1 spore germination protein AC 2948418 gerAC 5622255 gerAC Bacillus pumilus SAFR-032 spore germination protein AC YP_001488175.1 2947297 D 315750 CDS YP_001488176.1 157693714 5622256 2948456..2948824 1 NC_009848.1 hypothetical protein 2948824 5622256 BPUM_2962 Bacillus pumilus SAFR-032 hypothetical protein YP_001488176.1 2948456 D 315750 CDS YP_001488177.1 157693715 5622257 complement(2948872..2949507) 1 NC_009848.1 YvqC; response regulator 2949507 5622257 BPUM_2963 Bacillus pumilus SAFR-032 response regulator YP_001488177.1 2948872 R 315750 CDS YP_001488178.1 157693716 5622258 complement(2949504..2950568) 1 NC_009848.1 YvqE; sensor histidine kinase 2950568 5622258 BPUM_2964 Bacillus pumilus SAFR-032 sensor histidine kinase YP_001488178.1 2949504 R 315750 CDS YP_001488179.1 157693717 5622259 complement(2950565..2951290) 1 NC_009848.1 YvqF; hypothetical protein 2951290 5622259 BPUM_2965 Bacillus pumilus SAFR-032 hypothetical protein YP_001488179.1 2950565 R 315750 CDS YP_001488180.1 157693718 5622260 complement(2951360..2952229) 1 NC_009848.1 YvqG; hypothetical protein 2952229 5622260 BPUM_2966 Bacillus pumilus SAFR-032 hypothetical protein YP_001488180.1 2951360 R 315750 CDS YP_001488181.1 157693719 5622261 complement(2952341..2953006) 1 NC_009848.1 YvqH; bacteriophage shock protein A 2953006 5622261 BPUM_2967 Bacillus pumilus SAFR-032 bacteriophage shock protein A YP_001488181.1 2952341 R 315750 CDS YP_001488182.1 157693720 5622262 complement(2953022..2953414) 1 NC_009848.1 YvqI; hypothetical protein 2953414 5622262 BPUM_2968 Bacillus pumilus SAFR-032 hypothetical protein YP_001488182.1 2953022 R 315750 CDS YP_001488183.1 157693721 5622263 complement(2953749..2954318) 1 NC_009848.1 YvqK; cob(I)yrinic acid a,c-diamide adenosyltransferase 2954318 5622263 BPUM_2969 Bacillus pumilus SAFR-032 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_001488183.1 2953749 R 315750 CDS YP_001488184.1 157693722 5622264 2954367..2954489 1 NC_009848.1 hypothetical protein 2954489 5622264 BPUM_2970 Bacillus pumilus SAFR-032 hypothetical protein YP_001488184.1 2954367 D 315750 CDS YP_001488185.1 157693723 5622265 2954508..2955254 1 NC_009848.1 3-oxoacyl-ACP reductase 2955254 5622265 BPUM_2971 Bacillus pumilus SAFR-032 3-oxoacyl-ACP reductase YP_001488185.1 2954508 D 315750 CDS YP_001488186.1 157693724 5622266 complement(2955272..2956297) 1 NC_009848.1 4-hydroxythreonine-4-phosphate dehydrogenase 2956297 pdxA 5622266 pdxA Bacillus pumilus SAFR-032 4-hydroxythreonine-4-phosphate dehydrogenase YP_001488186.1 2955272 R 315750 CDS YP_001488187.1 157693725 5622267 complement(2956273..2957616) 1 NC_009848.1 hypothetical protein 2957616 5622267 BPUM_2973 Bacillus pumilus SAFR-032 hypothetical protein YP_001488187.1 2956273 R 315750 CDS YP_001488188.1 157693726 5622268 complement(2957642..2959423) 1 NC_009848.1 possible sigma-L-dependent transcriptional regulator; transcriptional regulator 2959423 5622268 BPUM_2974 Bacillus pumilus SAFR-032 transcriptional regulator YP_001488188.1 2957642 R 315750 CDS YP_001488189.1 157693727 5622269 complement(2959570..2960745) 1 NC_009848.1 hypothetical protein 2960745 5622269 BPUM_2975 Bacillus pumilus SAFR-032 hypothetical protein YP_001488189.1 2959570 R 315750 CDS YP_001488190.1 157693728 5622270 complement(2960742..2962148) 1 NC_009848.1 SSS family solute/sodium (Na+) symporter 2962148 5622270 BPUM_2976 Bacillus pumilus SAFR-032 SSS family solute/sodium (Na+) symporter YP_001488190.1 2960742 R 315750 CDS YP_001488191.1 157693729 5622271 complement(2962222..2963394) 1 NC_009848.1 alcohol dehydrogenase 2963394 5622271 BPUM_2977 Bacillus pumilus SAFR-032 alcohol dehydrogenase YP_001488191.1 2962222 R 315750 CDS YP_001488192.1 157693730 5622272 complement(2963402..2964301) 1 NC_009848.1 dihydrodipicolinate synthase 2964301 dapA3 5622272 dapA3 Bacillus pumilus SAFR-032 dihydrodipicolinate synthase YP_001488192.1 2963402 R 315750 CDS YP_001488193.1 157693731 5622273 complement(2964483..2965766) 1 NC_009848.1 YvrA; iron ABC transporter ATP-binding protein 2965766 5622273 BPUM_2979 Bacillus pumilus SAFR-032 iron ABC transporter ATP-binding protein YP_001488193.1 2964483 R 315750 CDS YP_001488194.1 157693732 5622274 complement(2965763..2966821) 1 NC_009848.1 YvrB; iron ABC transporter membrane protein 2966821 5622274 BPUM_2980 Bacillus pumilus SAFR-032 iron ABC transporter membrane protein YP_001488194.1 2965763 R 315750 CDS YP_001488195.1 157693733 5622275 complement(2966787..2967737) 1 NC_009848.1 YvrC; iron ABC transporter binding protein 2967737 5622275 BPUM_2981 Bacillus pumilus SAFR-032 iron ABC transporter binding protein YP_001488195.1 2966787 R 315750 CDS YP_001488196.1 157693734 5622276 complement(2967814..2967906) 1 NC_009848.1 hypothetical protein 2967906 5622276 BPUM_2982 Bacillus pumilus SAFR-032 hypothetical protein YP_001488196.1 2967814 R 315750 CDS YP_001488197.1 157693735 5622277 complement(2967912..2969303) 1 NC_009848.1 glycoside hydrolase 2969303 5622277 BPUM_2983 Bacillus pumilus SAFR-032 glycoside hydrolase YP_001488197.1 2967912 R 315750 CDS YP_001488198.1 157693736 5622278 complement(2969324..2970817) 1 NC_009848.1 mannonate dehydratase 2970817 uxaA 5622278 uxaA Bacillus pumilus SAFR-032 mannonate dehydratase YP_001488198.1 2969324 R 315750 CDS YP_001488199.1 157693737 5622279 complement(2970814..2972271) 1 NC_009848.1 catalyzes the formation of D-tagaturonate from D-altronate; altronate oxidoreductase 2972271 uxaB 5622279 uxaB Bacillus pumilus SAFR-032 altronate oxidoreductase YP_001488199.1 2970814 R 315750 CDS YP_001488200.1 157693738 5622280 complement(2972331..2973341) 1 NC_009848.1 LacI family transcriptional regulator 2973341 5622280 BPUM_2986 Bacillus pumilus SAFR-032 LacI family transcriptional regulator YP_001488200.1 2972331 R 315750 CDS YP_001488201.1 157693739 5622281 complement(2973410..2974846) 1 NC_009848.1 catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 2974846 uxaC 5622281 uxaC Bacillus pumilus SAFR-032 glucuronate isomerase YP_001488201.1 2973410 R 315750 CDS YP_001488202.1 157693740 5622282 complement(2974983..2976737) 1 NC_009848.1 YvrG; sensor histidine kinase 2976737 5622282 BPUM_2988 Bacillus pumilus SAFR-032 sensor histidine kinase YP_001488202.1 2974983 R 315750 CDS YP_001488203.1 157693741 5622283 complement(2976741..2977463) 1 NC_009848.1 YvrH; response regulator 2977463 5622283 BPUM_2989 Bacillus pumilus SAFR-032 response regulator YP_001488203.1 2976741 R 315750 CDS YP_001488204.1 157693742 5622284 complement(2977640..2978455) 1 NC_009848.1 ferrichrome ABC transporter 2978455 fhuC 5622284 fhuC Bacillus pumilus SAFR-032 ferrichrome ABC transporter YP_001488204.1 2977640 R 315750 CDS YP_001488205.1 157693743 5622285 complement(2978475..2979497) 1 NC_009848.1 ferrichrome ABC transporter membrane protein 2979497 fhuG 5622285 fhuG Bacillus pumilus SAFR-032 ferrichrome ABC transporter membrane protein YP_001488205.1 2978475 R 315750 CDS YP_001488206.1 157693744 5622286 complement(2979498..2980550) 1 NC_009848.1 ferrichrome ABC transporter membrane protein 2980550 fhuB 5622286 fhuB Bacillus pumilus SAFR-032 ferrichrome ABC transporter membrane protein YP_001488206.1 2979498 R 315750 CDS YP_001488207.1 157693745 5622287 complement(2980625..2980702) 1 NC_009848.1 hypothetical protein 2980702 5622287 BPUM_2993 Bacillus pumilus SAFR-032 hypothetical protein YP_001488207.1 2980625 R 315750 CDS YP_001488208.1 157693746 5622288 2980810..2981748 1 NC_009848.1 ferrichrome ABC transporter 2981748 5622288 BPUM_2994 Bacillus pumilus SAFR-032 ferrichrome ABC transporter YP_001488208.1 2980810 D 315750 CDS YP_001488209.1 157693747 5622289 complement(2981784..2983190) 1 NC_009848.1 YvsH; APC family amino acid-polyamine-organocation transporter 2983190 5622289 BPUM_2995 Bacillus pumilus SAFR-032 APC family amino acid-polyamine-organocation transporter YP_001488209.1 2981784 R 315750 CDS YP_001488210.1 157693748 5622290 complement(2983322..2983522) 1 NC_009848.1 hypothetical protein 2983522 5622290 BPUM_2996 Bacillus pumilus SAFR-032 hypothetical protein YP_001488210.1 2983322 R 315750 CDS YP_001488211.1 157693749 5622291 complement(2983680..2983823) 1 NC_009848.1 small acid-soluble spore protein J 2983823 sspJ 5622291 sspJ Bacillus pumilus SAFR-032 small acid-soluble spore protein J YP_001488211.1 2983680 R 315750 CDS YP_001488212.1 157693750 5622292 complement(2983906..2984334) 1 NC_009848.1 MarR family transcriptional regulator 2984334 5622292 BPUM_2998 Bacillus pumilus SAFR-032 MarR family transcriptional regulator YP_001488212.1 2983906 R 315750 CDS YP_001488213.1 157693751 5622293 complement(2984380..2984526) 1 NC_009848.1 hypothetical protein 2984526 5622293 BPUM_2999 Bacillus pumilus SAFR-032 hypothetical protein YP_001488213.1 2984380 R 315750 CDS YP_001488214.1 157693752 5622294 2984507..2985007 1 NC_009848.1 YvsG; hypothetical protein 2985007 5622294 BPUM_3000 Bacillus pumilus SAFR-032 hypothetical protein YP_001488214.1 2984507 D 315750 CDS YP_001488215.1 157693753 5622295 2985124..2986974 1 NC_009848.1 YvgJ; sulfatase 2986974 5622295 BPUM_3001 Bacillus pumilus SAFR-032 sulfatase YP_001488215.1 2985124 D 315750 CDS YP_001488216.1 157693754 5622296 2987108..2987902 1 NC_009848.1 YvgL; molybdenum ABC transporter ATP-binding protein 2987902 5622296 BPUM_3002 Bacillus pumilus SAFR-032 molybdenum ABC transporter ATP-binding protein YP_001488216.1 2987108 D 315750 CDS YP_001488217.1 157693755 5622297 2987902..2988564 1 NC_009848.1 molybdenum ABC transporter membrane protein 2988564 5622297 BPUM_3003 Bacillus pumilus SAFR-032 molybdenum ABC transporter membrane protein YP_001488217.1 2987902 D 315750 CDS YP_001488218.1 157693756 5622298 complement(2988605..2989450) 1 NC_009848.1 YvgN; aldo/keto reductase 2989450 5622298 BPUM_3004 Bacillus pumilus SAFR-032 aldo/keto reductase YP_001488218.1 2988605 R 315750 CDS YP_001488219.1 157693757 5622299 complement(2989520..2990389) 1 NC_009848.1 ROK family protein 2990389 5622299 BPUM_3005 Bacillus pumilus SAFR-032 ROK family protein YP_001488219.1 2989520 R 315750 CDS YP_001488220.1 157693758 5622300 complement(2990453..2992468) 1 NC_009848.1 YvgP; CPA1 family monovalent cation:proton (H+) antiporter-1 2992468 5622300 BPUM_3006 Bacillus pumilus SAFR-032 CPA1 family monovalent cation:proton (H+) antiporter-1 YP_001488220.1 2990453 R 315750 CDS YP_001488221.1 157693759 5622301 complement(2992787..2993398) 1 NC_009848.1 YvgT; hypothetical protein 2993398 5622301 BPUM_3007 Bacillus pumilus SAFR-032 hypothetical protein YP_001488221.1 2992787 R 315750 CDS YP_001488222.1 157693760 5622302 complement(2993545..2993958) 1 NC_009848.1 disulfide dehydrogenase C 2993958 bdbC 5622302 bdbC Bacillus pumilus SAFR-032 disulfide dehydrogenase C YP_001488222.1 2993545 R 315750 CDS YP_001488223.1 157693761 5622303 complement(2993955..2994641) 1 NC_009848.1 disulfide dehydrogenase D 2994641 bdbD 5622303 bdbD Bacillus pumilus SAFR-032 disulfide dehydrogenase D YP_001488223.1 2993955 R 315750 CDS YP_001488224.1 157693762 5622304 complement(2994786..2996885) 1 NC_009848.1 P-ATPase superfamily P-type ATPase metal transporter 2996885 5622304 BPUM_3010 Bacillus pumilus SAFR-032 P-ATPase superfamily P-type ATPase metal transporter YP_001488224.1 2994786 R 315750 CDS YP_001488225.1 157693763 5622305 2997311..2998054 1 NC_009848.1 metal cation ABC transporter ATP-binding protein 2998054 mntB 5622305 mntB Bacillus pumilus SAFR-032 metal cation ABC transporter ATP-binding protein YP_001488225.1 2997311 D 315750 CDS YP_001488226.1 157693764 5622306 2998054..2998926 1 NC_009848.1 metal cation ABC transporter membrane protein 2998926 mntD 5622306 mntD Bacillus pumilus SAFR-032 metal cation ABC transporter membrane protein YP_001488226.1 2998054 D 315750 CDS YP_001488227.1 157693765 5622307 2998940..2999878 1 NC_009848.1 metal cation ABC transporter ATP-binding protein 2999878 mntA 5622307 mntA Bacillus pumilus SAFR-032 metal cation ABC transporter ATP-binding protein YP_001488227.1 2998940 D 315750 CDS YP_001488228.1 157693766 5622308 complement(2999913..3000461) 1 NC_009848.1 YmcC; hypothetical protein 3000461 5622308 BPUM_3014 Bacillus pumilus SAFR-032 hypothetical protein YP_001488228.1 2999913 R 315750 CDS YP_001488229.1 157693767 5622309 3000551..3001159 1 NC_009848.1 transcriptional regulator 3001159 pksA 5622309 pksA Bacillus pumilus SAFR-032 transcriptional regulator YP_001488229.1 3000551 D 315750 CDS YP_001488230.1 157693768 5622310 complement(3001175..3002107) 1 NC_009848.1 response regulator 3002107 5622310 BPUM_3016 Bacillus pumilus SAFR-032 response regulator YP_001488230.1 3001175 R 315750 CDS YP_001488231.1 157693769 5622311 complement(3002104..3003420) 1 NC_009848.1 sensor histidine kinase 3003420 5622311 BPUM_3017 Bacillus pumilus SAFR-032 sensor histidine kinase YP_001488231.1 3002104 R 315750 CDS YP_001488232.1 157693770 5622312 complement(3003537..3004982) 1 NC_009848.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 3004982 ansB1 5622312 ansB1 Bacillus pumilus SAFR-032 aspartate ammonia-lyase YP_001488232.1 3003537 R 315750 CDS YP_001488233.1 157693771 5622313 complement(3004999..3006276) 1 NC_009848.1 DAACS family dicarboxylate/amino acid:sodium or proton symporter 3006276 5622313 BPUM_3019 Bacillus pumilus SAFR-032 DAACS family dicarboxylate/amino acid:sodium or proton symporter YP_001488233.1 3004999 R 315750 CDS YP_001488234.1 157693772 5622314 complement(3006453..3006587) 1 NC_009848.1 hypothetical protein 3006587 5622314 BPUM_3020 Bacillus pumilus SAFR-032 hypothetical protein YP_001488234.1 3006453 R 315750 CDS YP_001488235.1 157693773 5622315 complement(3006584..3009019) 1 NC_009848.1 P-ATPase superfamily P-type ATPase heavy metal transporter 3009019 5622315 BPUM_3021 Bacillus pumilus SAFR-032 P-ATPase superfamily P-type ATPase heavy metal transporter YP_001488235.1 3006584 R 315750 CDS YP_001488236.1 157693774 5622316 complement(3009296..3009502) 1 NC_009848.1 CopZ; MerTP family mercury (Hg2+) permease, binding protein MerP 3009502 merP 5622316 merP Bacillus pumilus SAFR-032 MerTP family mercury (Hg2+) permease, binding protein MerP YP_001488236.1 3009296 R 315750 CDS YP_001488237.1 157693775 5622317 complement(3009575..3009880) 1 NC_009848.1 YvgZ; hypothetical protein 3009880 5622317 BPUM_3023 Bacillus pumilus SAFR-032 hypothetical protein YP_001488237.1 3009575 R 315750 CDS YP_001488238.1 157693776 5622318 complement(3009982..3010437) 1 NC_009848.1 YybP; hypothetical protein 3010437 5622318 BPUM_3024 Bacillus pumilus SAFR-032 hypothetical protein YP_001488238.1 3009982 R 315750 CDS YP_001488239.1 157693777 5622319 complement(3010444..3010596) 1 NC_009848.1 hypothetical protein 3010596 5622319 BPUM_3025 Bacillus pumilus SAFR-032 hypothetical protein YP_001488239.1 3010444 R 315750 CDS YP_001488240.1 157693778 5622320 complement(3010716..3012305) 1 NC_009848.1 GGDEF domain containing protein; diguanylate cyclase 3012305 5622320 BPUM_3026 Bacillus pumilus SAFR-032 diguanylate cyclase YP_001488240.1 3010716 R 315750 CDS YP_001488241.1 157693779 5622321 3012550..3012789 1 NC_009848.1 hypothetical protein 3012789 5622321 BPUM_3027 Bacillus pumilus SAFR-032 hypothetical protein YP_001488241.1 3012550 D 315750 CDS YP_001488242.1 157693780 5622322 complement(3012927..3013478) 1 NC_009848.1 hypothetical protein 3013478 5622322 BPUM_3028 Bacillus pumilus SAFR-032 hypothetical protein YP_001488242.1 3012927 R 315750 CDS YP_001488243.1 157693781 5622323 3014188..3015018 1 NC_009848.1 hypothetical protein 3015018 5622323 BPUM_3029 Bacillus pumilus SAFR-032 hypothetical protein YP_001488243.1 3014188 D 315750 CDS YP_001488244.1 157693782 5622324 complement(3015643..3016113) 1 NC_009848.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 3016113 smpB 5622324 smpB Bacillus pumilus SAFR-032 SsrA-binding protein YP_001488244.1 3015643 R 315750 CDS YP_001488245.1 157693783 5622325 complement(3016253..3018595) 1 NC_009848.1 ribonuclease R 3018595 rnr 5622325 rnr Bacillus pumilus SAFR-032 ribonuclease R YP_001488245.1 3016253 R 315750 CDS YP_001488246.1 157693784 5622326 complement(3018615..3019361) 1 NC_009848.1 carboxylesterase 3019361 bioH 5622326 bioH Bacillus pumilus SAFR-032 carboxylesterase YP_001488246.1 3018615 R 315750 CDS YP_001488247.1 157693785 5622327 complement(3019486..3019719) 1 NC_009848.1 preprotein translocase subunit SecG 3019719 secG 5622327 secG Bacillus pumilus SAFR-032 preprotein translocase subunit SecG YP_001488247.1 3019486 R 315750 CDS YP_001488248.1 157693786 5622328 3019714..3019932 1 NC_009848.1 hypothetical protein 3019932 5622328 BPUM_3034 Bacillus pumilus SAFR-032 hypothetical protein YP_001488248.1 3019714 D 315750 CDS YP_001488249.1 157693787 5622329 complement(3019906..3020196) 1 NC_009848.1 transcriptional regulator 3020196 abhA 5622329 abhA Bacillus pumilus SAFR-032 transcriptional regulator YP_001488249.1 3019906 R 315750 CDS YP_001488250.1 157693788 5622330 complement(3020223..3020456) 1 NC_009848.1 transcriptional regulator 3020456 yvzC 5622330 yvzC Bacillus pumilus SAFR-032 transcriptional regulator YP_001488250.1 3020223 R 315750 CDS YP_001488251.1 157693789 5622331 3020610..3021014 1 NC_009848.1 transcriptional regulator 3021014 5622331 BPUM_3037 Bacillus pumilus SAFR-032 transcriptional regulator YP_001488251.1 3020610 D 315750 CDS YP_001488252.1 157693790 5622332 3021145..3021543 1 NC_009848.1 hypothetical protein 3021543 5622332 BPUM_3038 Bacillus pumilus SAFR-032 hypothetical protein YP_001488252.1 3021145 D 315750 CDS YP_001488253.1 157693791 5622333 3021626..3021946 1 NC_009848.1 hypothetical protein 3021946 5622333 BPUM_3039 Bacillus pumilus SAFR-032 hypothetical protein YP_001488253.1 3021626 D 315750 CDS YP_001488254.1 157693792 5622334 complement(3022027..3022716) 1 NC_009848.1 glycine betaine/carnitine/choline ABC transporter membrane protein 3022716 opuCD 5622334 opuCD Bacillus pumilus SAFR-032 glycine betaine/carnitine/choline ABC transporter membrane protein YP_001488254.1 3022027 R 315750 CDS YP_001488255.1 157693793 5622335 complement(3022738..3023655) 1 NC_009848.1 glycine betaine/carnitine/choline ABC transporter binding protein 3023655 opuCC 5622335 opuCC Bacillus pumilus SAFR-032 glycine betaine/carnitine/choline ABC transporter binding protein YP_001488255.1 3022738 R 315750 CDS YP_001488256.1 157693794 5622336 complement(3023669..3024322) 1 NC_009848.1 glycine betaine/carnitine/choline ABC transporter membrane protein 3024322 opuCB 5622336 opuCB Bacillus pumilus SAFR-032 glycine betaine/carnitine/choline ABC transporter membrane protein YP_001488256.1 3023669 R 315750 CDS YP_001488257.1 157693795 5622337 complement(3024336..3025484) 1 NC_009848.1 glycine betaine/carnitine/choline ABC transporter ATP-binding protein 3025484 opuCA 5622337 opuCA Bacillus pumilus SAFR-032 glycine betaine/carnitine/choline ABC transporter ATP-binding protein YP_001488257.1 3024336 R 315750 CDS YP_001488258.1 157693796 5622338 3025754..3026290 1 NC_009848.1 transcriptional regulator 3026290 5622338 BPUM_3044 Bacillus pumilus SAFR-032 transcriptional regulator YP_001488258.1 3025754 D 315750 CDS YP_001488259.1 157693797 5622339 complement(3026346..3026978) 1 NC_009848.1 hypothetical protein 3026978 5622339 BPUM_3045 Bacillus pumilus SAFR-032 hypothetical protein YP_001488259.1 3026346 R 315750 CDS YP_001488260.1 157693798 5622340 3027096..3027560 1 NC_009848.1 hypothetical protein 3027560 5622340 BPUM_3046 Bacillus pumilus SAFR-032 hypothetical protein YP_001488260.1 3027096 D 315750 CDS YP_001488261.1 157693799 5622341 3027576..3028040 1 NC_009848.1 GNAT family acetyltransferase 3028040 yvbK 5622341 yvbK Bacillus pumilus SAFR-032 GNAT family acetyltransferase YP_001488261.1 3027576 D 315750 CDS YP_001488262.1 157693800 5622342 complement(3028060..3028341) 1 NC_009848.1 hypothetical protein 3028341 5622342 BPUM_3048 Bacillus pumilus SAFR-032 hypothetical protein YP_001488262.1 3028060 R 315750 CDS YP_001488263.1 157693801 5622343 complement(3028338..3028706) 1 NC_009848.1 hypothetical protein 3028706 5622343 BPUM_3049 Bacillus pumilus SAFR-032 hypothetical protein YP_001488263.1 3028338 R 315750 CDS YP_001488264.1 157693802 5622344 complement(3028703..3030100) 1 NC_009848.1 hypothetical protein 3030100 5622344 BPUM_3050 Bacillus pumilus SAFR-032 hypothetical protein YP_001488264.1 3028703 R 315750 CDS YP_001488265.1 157693803 5622345 complement(3030072..3030839) 1 NC_009848.1 ABC transporter ATP-binding protein 3030839 5622345 BPUM_3051 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488265.1 3030072 R 315750 CDS YP_001488266.1 157693804 5622346 complement(3030898..3031167) 1 NC_009848.1 hypothetical protein 3031167 5622346 BPUM_3052 Bacillus pumilus SAFR-032 hypothetical protein YP_001488266.1 3030898 R 315750 CDS YP_001488267.1 157693805 5622347 complement(3031425..3032717) 1 NC_009848.1 enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 3032717 eno 5622347 eno Bacillus pumilus SAFR-032 phosphopyruvate hydratase YP_001488267.1 3031425 R 315750 CDS YP_001488268.1 157693806 5622348 complement(3032747..3034282) 1 NC_009848.1 catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase 3034282 gpmI 5622348 gpmI Bacillus pumilus SAFR-032 phosphoglyceromutase YP_001488268.1 3032747 R 315750 CDS YP_001488269.1 157693807 5622349 complement(3034275..3035036) 1 NC_009848.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 3035036 tpiA 5622349 tpiA Bacillus pumilus SAFR-032 triosephosphate isomerase YP_001488269.1 3034275 R 315750 CDS YP_001488270.1 157693808 5622350 complement(3035067..3036251) 1 NC_009848.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3036251 pgk 5622350 pgk Bacillus pumilus SAFR-032 phosphoglycerate kinase YP_001488270.1 3035067 R 315750 CDS YP_001488271.1 157693809 5622351 complement(3036465..3037472) 1 NC_009848.1 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) 3037472 gapA 5622351 gapA Bacillus pumilus SAFR-032 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) YP_001488271.1 3036465 R 315750 CDS YP_001488272.1 157693810 5622352 complement(3037504..3038541) 1 NC_009848.1 transcriptional regulator 3038541 cggR 5622352 cggR Bacillus pumilus SAFR-032 transcriptional regulator YP_001488272.1 3037504 R 315750 CDS YP_001488273.1 157693811 5622353 complement(3038855..3040270) 1 NC_009848.1 APC family amino acid-polyamine-organocation transporter 3040270 rocC 5622353 rocC Bacillus pumilus SAFR-032 APC family amino acid-polyamine-organocation transporter YP_001488273.1 3038855 R 315750 CDS YP_001488274.1 157693812 5622354 complement(3040377..3041570) 1 NC_009848.1 ornithine--oxo-acid transaminase 3041570 rocD 5622354 rocD Bacillus pumilus SAFR-032 ornithine--oxo-acid transaminase YP_001488274.1 3040377 R 315750 CDS YP_001488275.1 157693813 5622355 3041780..3043222 1 NC_009848.1 transcriptional regulator 3043222 5622355 BPUM_3061 Bacillus pumilus SAFR-032 transcriptional regulator YP_001488275.1 3041780 D 315750 CDS YP_001488276.1 157693814 5622356 complement(3043250..3043987) 1 NC_009848.1 YvfI; GntR family transcriptional regulator 3043987 5622356 BPUM_3062 Bacillus pumilus SAFR-032 GntR family transcriptional regulator YP_001488276.1 3043250 R 315750 CDS YP_001488277.1 157693815 5622357 complement(3044159..3045463) 1 NC_009848.1 DNA-directed RNA polymerase sigma subunit SigL 3045463 sigL 5622357 sigL Bacillus pumilus SAFR-032 DNA-directed RNA polymerase sigma subunit SigL YP_001488277.1 3044159 R 315750 CDS YP_001488278.1 157693816 5622358 3045534..3045749 1 NC_009848.1 YvfG; hypothetical protein 3045749 5622358 BPUM_3064 Bacillus pumilus SAFR-032 hypothetical protein YP_001488278.1 3045534 D 315750 CDS YP_001488279.1 157693817 5622359 complement(3045770..3047095) 1 NC_009848.1 MATE family multi antimicrobial extrusion protein 3047095 5622359 BPUM_3065 Bacillus pumilus SAFR-032 MATE family multi antimicrobial extrusion protein YP_001488279.1 3045770 R 315750 CDS YP_001488280.1 157693818 5622360 complement(3047158..3047973) 1 NC_009848.1 oligopeptide ABC transporter ATP-binding protein 3047973 5622360 BPUM_3066 Bacillus pumilus SAFR-032 oligopeptide ABC transporter ATP-binding protein YP_001488280.1 3047158 R 315750 CDS YP_001488281.1 157693819 5622361 complement(3047987..3048829) 1 NC_009848.1 oligopeptide ABC transporter ATP-binding protein 3048829 appDB 5622361 appDB Bacillus pumilus SAFR-032 oligopeptide ABC transporter ATP-binding protein YP_001488281.1 3047987 R 315750 CDS YP_001488282.1 157693820 5622362 complement(3048807..3049640) 1 NC_009848.1 oligopeptide ABC transporter membrane protein 3049640 appCB 5622362 appCB Bacillus pumilus SAFR-032 oligopeptide ABC transporter membrane protein YP_001488282.1 3048807 R 315750 CDS YP_001488283.1 157693821 5622363 complement(3049637..3050581) 1 NC_009848.1 oligopeptide ABC transporter membrane protein 3050581 appBB 5622363 appBB Bacillus pumilus SAFR-032 oligopeptide ABC transporter membrane protein YP_001488283.1 3049637 R 315750 CDS YP_001488284.1 157693822 5622364 complement(3050600..3052222) 1 NC_009848.1 oligopeptide ABC transporter substrate-binding protein 3052222 appAB 5622364 appAB Bacillus pumilus SAFR-032 oligopeptide ABC transporter substrate-binding protein YP_001488284.1 3050600 R 315750 CDS YP_001488285.1 157693823 5622365 complement(3052372..3053553) 1 NC_009848.1 polysaccharide biosynthesis protein YvfE; pyridoxal-phosphate-dependent aminotransferase 3053553 5622365 BPUM_3071 Bacillus pumilus SAFR-032 pyridoxal-phosphate-dependent aminotransferase YP_001488285.1 3052372 R 315750 CDS YP_001488286.1 157693824 5622366 complement(3053550..3054239) 1 NC_009848.1 YvfD; hypothetical protein 3054239 5622366 BPUM_3072 Bacillus pumilus SAFR-032 hypothetical protein YP_001488286.1 3053550 R 315750 CDS YP_001488287.1 157693825 5622367 complement(3054202..3054795) 1 NC_009848.1 YvfC; sugar transferase 3054795 5622367 BPUM_3073 Bacillus pumilus SAFR-032 sugar transferase YP_001488287.1 3054202 R 315750 CDS YP_001488288.1 157693826 5622368 complement(3054816..3056330) 1 NC_009848.1 polysaccharide biosynthesis protein 3056330 5622368 BPUM_3074 Bacillus pumilus SAFR-032 polysaccharide biosynthesis protein YP_001488288.1 3054816 R 315750 CDS YP_001488289.1 157693827 5622369 complement(3056359..3057381) 1 NC_009848.1 YveS; polysaccharide biosynthesis protein 3057381 5622369 BPUM_3075 Bacillus pumilus SAFR-032 polysaccharide biosynthesis protein YP_001488289.1 3056359 R 315750 CDS YP_001488290.1 157693828 5622370 complement(3057393..3058415) 1 NC_009848.1 YveR; glycosyltransferase 3058415 5622370 BPUM_3076 Bacillus pumilus SAFR-032 glycosyltransferase YP_001488290.1 3057393 R 315750 CDS YP_001488291.1 157693829 5622371 complement(3058443..3059546) 1 NC_009848.1 YveQ; hypothetical protein 3059546 5622371 BPUM_3077 Bacillus pumilus SAFR-032 hypothetical protein YP_001488291.1 3058443 R 315750 CDS YP_001488292.1 157693830 5622372 complement(3059561..3060691) 1 NC_009848.1 YveP; glycosyltransferase 3060691 5622372 BPUM_3078 Bacillus pumilus SAFR-032 glycosyltransferase YP_001488292.1 3059561 R 315750 CDS YP_001488293.1 157693831 5622373 complement(3060684..3061529) 1 NC_009848.1 YveO; glycosyltransferase 3061529 5622373 BPUM_3079 Bacillus pumilus SAFR-032 glycosyltransferase YP_001488293.1 3060684 R 315750 CDS YP_001488294.1 157693832 5622374 complement(3061526..3062665) 1 NC_009848.1 YveN; glycosyltransferase 3062665 5622374 BPUM_3080 Bacillus pumilus SAFR-032 glycosyltransferase YP_001488294.1 3061526 R 315750 CDS YP_001488295.1 157693833 5622375 complement(3062631..3064505) 1 NC_009848.1 YveM; capsular polysaccharide biosynthesis protein 3064505 5622375 BPUM_3081 Bacillus pumilus SAFR-032 capsular polysaccharide biosynthesis protein YP_001488295.1 3062631 R 315750 CDS YP_001488296.1 157693834 5622376 complement(3064670..3065353) 1 NC_009848.1 YveL; capsular polysaccharide biosynthesis protein 3065353 5622376 BPUM_3082 Bacillus pumilus SAFR-032 capsular polysaccharide biosynthesis protein YP_001488296.1 3064670 R 315750 CDS YP_001488297.1 157693835 5622377 complement(3065343..3066074) 1 NC_009848.1 YveK; capsular polysaccharide biosynthesis protein 3066074 5622377 BPUM_3083 Bacillus pumilus SAFR-032 capsular polysaccharide biosynthesis protein YP_001488297.1 3065343 R 315750 CDS YP_001488298.1 157693836 5622378 3066332..3066802 1 NC_009848.1 transcriptional regulator 3066802 5622378 BPUM_3084 Bacillus pumilus SAFR-032 transcriptional regulator YP_001488298.1 3066332 D 315750 CDS YP_001488299.1 157693837 5622379 complement(3066891..3067115) 1 NC_009848.1 holin 3067115 5622379 BPUM_3085 Bacillus pumilus SAFR-032 holin YP_001488299.1 3066891 R 315750 CDS YP_001488300.1 157693838 5622380 complement(3067255..3068157) 1 NC_009848.1 ferrichrome ABC transporter 3068157 5622380 BPUM_3086 Bacillus pumilus SAFR-032 ferrichrome ABC transporter YP_001488300.1 3067255 R 315750 CDS YP_001488301.1 157693839 5622381 complement(3068178..3069179) 1 NC_009848.1 ferrichrome ABC transporter membrane protein 3069179 5622381 BPUM_3087 Bacillus pumilus SAFR-032 ferrichrome ABC transporter membrane protein YP_001488301.1 3068178 R 315750 CDS YP_001488302.1 157693840 5622382 complement(3069176..3070204) 1 NC_009848.1 ferrichrome ABC transporter membrane protein 3070204 5622382 BPUM_3088 Bacillus pumilus SAFR-032 ferrichrome ABC transporter membrane protein YP_001488302.1 3069176 R 315750 CDS YP_001488303.1 157693841 5622383 complement(3070194..3070295) 1 NC_009848.1 hypothetical protein 3070295 5622383 BPUM_3089 Bacillus pumilus SAFR-032 hypothetical protein YP_001488303.1 3070194 R 315750 CDS YP_001488304.1 157693842 5622384 3070514..3071923 1 NC_009848.1 YjeA; polysaccharide deacetylase 3071923 5622384 BPUM_3090 Bacillus pumilus SAFR-032 polysaccharide deacetylase YP_001488304.1 3070514 D 315750 CDS YP_001488305.1 157693843 5622385 complement(3071938..3073527) 1 NC_009848.1 ABC transporter ATP-binding protein 3073527 5622385 BPUM_3091 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488305.1 3071938 R 315750 CDS YP_001488306.1 157693844 5622386 complement(3073830..3074600) 1 NC_009848.1 ABC transporter ATP-binding protein 3074600 5622386 BPUM_3092 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488306.1 3073830 R 315750 CDS YP_001488307.1 157693845 5622387 complement(3074594..3075409) 1 NC_009848.1 ABC transporter ATP-binding protein 3075409 5622387 BPUM_3093 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488307.1 3074594 R 315750 CDS YP_001488308.1 157693846 5622388 complement(3075372..3076262) 1 NC_009848.1 ABC transporter ATP-binding protein 3076262 5622388 BPUM_3094 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488308.1 3075372 R 315750 CDS YP_001488309.1 157693847 5622389 complement(3076265..3077194) 1 NC_009848.1 ABC transporter ATP-binding protein 3077194 5622389 BPUM_3095 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488309.1 3076265 R 315750 CDS YP_001488310.1 157693848 5622390 complement(3077210..3078841) 1 NC_009848.1 ABC transporter ATP-binding protein 3078841 5622390 BPUM_3096 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488310.1 3077210 R 315750 CDS YP_001488311.1 157693849 5622391 complement(3078965..3080134) 1 NC_009848.1 YdhE; glucuronosyltransferase 3080134 5622391 BPUM_3097 Bacillus pumilus SAFR-032 glucuronosyltransferase YP_001488311.1 3078965 R 315750 CDS YP_001488312.1 157693850 5622392 complement(3080378..3080929) 1 NC_009848.1 hypothetical protein 3080929 5622392 BPUM_3098 Bacillus pumilus SAFR-032 hypothetical protein YP_001488312.1 3080378 R 315750 CDS YP_001488313.1 157693851 5622393 3081030..3081212 1 NC_009848.1 hypothetical protein 3081212 5622393 BPUM_3099 Bacillus pumilus SAFR-032 hypothetical protein YP_001488313.1 3081030 D 315750 CDS YP_001488314.1 157693852 5622395 complement(3081597..3081902) 1 NC_009848.1 hypothetical protein 3081902 5622395 BPUM_3100 Bacillus pumilus SAFR-032 hypothetical protein YP_001488314.1 3081597 R 315750 CDS YP_001488315.1 157693853 5622396 complement(3081872..3082090) 1 NC_009848.1 hypothetical protein 3082090 5622396 BPUM_3101 Bacillus pumilus SAFR-032 hypothetical protein YP_001488315.1 3081872 R 315750 CDS YP_001488316.1 157693854 5622397 3082130..3082726 1 NC_009848.1 hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 3082726 clpP 5622397 clpP Bacillus pumilus SAFR-032 ATP-dependent Clp protease proteolytic subunit YP_001488316.1 3082130 D 315750 CDS YP_001488317.1 157693855 5622398 complement(3082786..3083379) 1 NC_009848.1 YvdD; lysine decarboxylase 3083379 5622398 BPUM_3103 Bacillus pumilus SAFR-032 lysine decarboxylase YP_001488317.1 3082786 R 315750 CDS YP_001488318.1 157693856 5622399 3083502..3083831 1 NC_009848.1 YvdC; nucleotide pyrophosphohydrolase 3083831 mazG 5622399 mazG Bacillus pumilus SAFR-032 nucleotide pyrophosphohydrolase YP_001488318.1 3083502 D 315750 CDS YP_001488319.1 157693857 5622400 complement(3083860..3085482) 1 NC_009848.1 YvdB; SulP family sulfate permease 3085482 5622400 BPUM_3105 Bacillus pumilus SAFR-032 SulP family sulfate permease YP_001488319.1 3083860 R 315750 CDS YP_001488320.1 157693858 5622401 complement(3085520..3086173) 1 NC_009848.1 YvdA; carbonate dehydratase 3086173 5622401 BPUM_3106 Bacillus pumilus SAFR-032 carbonate dehydratase YP_001488320.1 3085520 R 315750 CDS YP_001488321.1 157693859 5622402 complement(3086372..3086446) 1 NC_009848.1 hypothetical protein 3086446 5622402 BPUM_3107 Bacillus pumilus SAFR-032 hypothetical protein YP_001488321.1 3086372 R 315750 CDS YP_001488322.1 157693860 5622403 3086655..3087626 1 NC_009848.1 YvcT; gluconate 2-dehydrogenase 3087626 5622403 BPUM_3108 Bacillus pumilus SAFR-032 gluconate 2-dehydrogenase YP_001488322.1 3086655 D 315750 CDS YP_001488323.1 157693861 5622404 3087623..3087712 1 NC_009848.1 hypothetical protein 3087712 5622404 BPUM_3109 Bacillus pumilus SAFR-032 hypothetical protein YP_001488323.1 3087623 D 315750 CDS YP_001488324.1 157693862 5622405 3087817..3088305 1 NC_009848.1 barnase; guanine-specific ribonuclease 3088305 5622405 BPUM_3110 Bacillus pumilus SAFR-032 guanine-specific ribonuclease YP_001488324.1 3087817 D 315750 CDS YP_001488325.1 157693863 5622406 complement(3088352..3089098) 1 NC_009848.1 YvcN; N-hydroxyarylamine O-acetyltransferase 3089098 5622406 BPUM_3111 Bacillus pumilus SAFR-032 N-hydroxyarylamine O-acetyltransferase YP_001488325.1 3088352 R 315750 CDS YP_001488326.1 157693864 5622407 complement(3089136..3089393) 1 NC_009848.1 phosphocarrier protein Chr 3089393 5622407 BPUM_3112 Bacillus pumilus SAFR-032 phosphocarrier protein Chr YP_001488326.1 3089136 R 315750 CDS YP_001488327.1 157693865 5622408 complement(3089420..3090370) 1 NC_009848.1 YvcL; hypothetical protein 3090370 5622408 BPUM_3113 Bacillus pumilus SAFR-032 hypothetical protein YP_001488327.1 3089420 R 315750 CDS YP_001488328.1 157693866 5622409 complement(3090388..3091347) 1 NC_009848.1 YvcK; hypothetical protein 3091347 5622409 BPUM_3114 Bacillus pumilus SAFR-032 hypothetical protein YP_001488328.1 3090388 R 315750 CDS YP_001488329.1 157693867 5622410 complement(3091348..3092271) 1 NC_009848.1 YvcJ; hypothetical protein 3092271 5622410 BPUM_3115 Bacillus pumilus SAFR-032 hypothetical protein YP_001488329.1 3091348 R 315750 CDS YP_001488330.1 157693868 5622411 complement(3092275..3092739) 1 NC_009848.1 NUDIX family hydrolase 3092739 5622411 BPUM_3116 Bacillus pumilus SAFR-032 NUDIX family hydrolase YP_001488330.1 3092275 R 315750 CDS YP_001488331.1 157693869 5622412 complement(3093097..3094047) 1 NC_009848.1 thioredoxin-disulfide reductase 3094047 trxB 5622412 trxB Bacillus pumilus SAFR-032 thioredoxin-disulfide reductase YP_001488331.1 3093097 R 315750 CDS YP_001488332.1 157693870 5622413 3094102..3094233 1 NC_009848.1 hypothetical protein 3094233 5622413 BPUM_3118 Bacillus pumilus SAFR-032 hypothetical protein YP_001488332.1 3094102 D 315750 CDS YP_001488333.1 157693871 5622414 complement(3094281..3095672) 1 NC_009848.1 YvcE; C40 family peptidase 3095672 5622414 BPUM_3119 Bacillus pumilus SAFR-032 C40 family peptidase YP_001488333.1 3094281 R 315750 CDS YP_001488334.1 157693872 5622415 complement(3096036..3097493) 1 NC_009848.1 transcriptional regulator 3097493 5622415 BPUM_3120 Bacillus pumilus SAFR-032 transcriptional regulator YP_001488334.1 3096036 R 315750 CDS YP_001488335.1 157693873 5622416 complement(3097625..3098254) 1 NC_009848.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase 3098254 hisI 5622416 hisI Bacillus pumilus SAFR-032 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase YP_001488335.1 3097625 R 315750 CDS YP_001488336.1 157693874 5622417 complement(3098251..3099009) 1 NC_009848.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 3099009 hisF 5622417 hisF Bacillus pumilus SAFR-032 imidazole glycerol phosphate synthase subunit HisF YP_001488336.1 3098251 R 315750 CDS YP_001488337.1 157693875 5622418 complement(3099006..3099743) 1 NC_009848.1 catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 3099743 hisA 5622418 hisA Bacillus pumilus SAFR-032 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase YP_001488337.1 3099006 R 315750 CDS YP_001488338.1 157693876 5622419 complement(3099740..3100378) 1 NC_009848.1 with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 3100378 hisH 5622419 hisH Bacillus pumilus SAFR-032 imidazole glycerol phosphate synthase subunit HisH YP_001488338.1 3099740 R 315750 CDS YP_001488339.1 157693877 5622420 complement(3100378..3100962) 1 NC_009848.1 catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 3100962 hisB 5622420 hisB Bacillus pumilus SAFR-032 imidazoleglycerol-phosphate dehydratase YP_001488339.1 3100378 R 315750 CDS YP_001488340.1 157693878 5622421 complement(3100959..3102248) 1 NC_009848.1 catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase 3102248 hisD 5622421 hisD Bacillus pumilus SAFR-032 histidinol dehydrogenase YP_001488340.1 3100959 R 315750 CDS YP_001488341.1 157693879 5622422 complement(3102245..3102886) 1 NC_009848.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit 3102886 hisG 5622422 hisG Bacillus pumilus SAFR-032 ATP phosphoribosyltransferase catalytic subunit YP_001488341.1 3102245 R 315750 CDS YP_001488342.1 157693880 5622423 complement(3102879..3104054) 1 NC_009848.1 May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit 3104054 hisZ 5622423 hisZ Bacillus pumilus SAFR-032 ATP phosphoribosyltransferase regulatory subunit YP_001488342.1 3102879 R 315750 CDS YP_001488343.1 157693881 5622424 3104288..3105082 1 NC_009848.1 hypothetical protein 3105082 5622424 BPUM_3129 Bacillus pumilus SAFR-032 hypothetical protein YP_001488343.1 3104288 D 315750 CDS YP_001488344.1 157693882 5622425 complement(3105143..3105781) 1 NC_009848.1 thioredoxin 3105781 5622425 BPUM_3130 Bacillus pumilus SAFR-032 thioredoxin YP_001488344.1 3105143 R 315750 CDS YP_001488345.1 157693883 5622426 complement(3105826..3106467) 1 NC_009848.1 FMN reductase 3106467 5622426 BPUM_3131 Bacillus pumilus SAFR-032 FMN reductase YP_001488345.1 3105826 R 315750 CDS YP_001488346.1 157693884 5622427 complement(3106553..3106981) 1 NC_009848.1 transcriptional regulator 3106981 5622427 BPUM_3132 Bacillus pumilus SAFR-032 transcriptional regulator YP_001488346.1 3106553 R 315750 CDS YP_001488347.1 157693885 5622428 complement(3107051..3107569) 1 NC_009848.1 hypothetical protein 3107569 5622428 BPUM_3133 Bacillus pumilus SAFR-032 hypothetical protein YP_001488347.1 3107051 R 315750 CDS YP_001488348.1 157693886 5622429 complement(3107571..3108221) 1 NC_009848.1 hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr dephosphorylation; pyrophosphatase PpaX 3108221 5622429 BPUM_3134 Bacillus pumilus SAFR-032 pyrophosphatase PpaX YP_001488348.1 3107571 R 315750 CDS YP_001488349.1 157693887 5622430 complement(3108218..3109162) 1 NC_009848.1 YvoD; hypothetical protein 3109162 5622430 BPUM_3135 Bacillus pumilus SAFR-032 hypothetical protein YP_001488349.1 3108218 R 315750 CDS YP_001488350.1 157693888 5622431 complement(3109182..3110006) 1 NC_009848.1 transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 3110006 lgt 5622431 lgt Bacillus pumilus SAFR-032 prolipoprotein diacylglyceryl transferase YP_001488350.1 3109182 R 315750 CDS YP_001488351.1 157693889 5622432 complement(3110018..3110950) 1 NC_009848.1 catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase 3110950 hprK 5622432 hprK Bacillus pumilus SAFR-032 HPr kinase/phosphorylase YP_001488351.1 3110018 R 315750 CDS YP_001488352.1 157693890 5622433 3111128..3112315 1 NC_009848.1 N-acetylglucosamine-6-phosphate deacetylase 3112315 nagA 5622433 nagA Bacillus pumilus SAFR-032 N-acetylglucosamine-6-phosphate deacetylase YP_001488352.1 3111128 D 315750 CDS YP_001488353.1 157693891 5622434 3112315..3113040 1 NC_009848.1 glucosamine-6-phosphate deaminase 3113040 nagB 5622434 nagB Bacillus pumilus SAFR-032 glucosamine-6-phosphate deaminase YP_001488353.1 3112315 D 315750 CDS YP_001488354.1 157693892 5622435 3113065..3113790 1 NC_009848.1 YvoA; transcriptional regulator 3113790 5622435 BPUM_3140 Bacillus pumilus SAFR-032 transcriptional regulator YP_001488354.1 3113065 D 315750 CDS YP_001488355.1 157693893 5622436 complement(3113820..3117677) 1 NC_009848.1 YvnB; metallophosphoesterase 3117677 5622436 BPUM_3141 Bacillus pumilus SAFR-032 metallophosphoesterase YP_001488355.1 3113820 R 315750 CDS YP_001488356.1 157693894 5622437 complement(3117772..3118158) 1 NC_009848.1 YvlD; hypothetical protein 3118158 5622437 BPUM_3142 Bacillus pumilus SAFR-032 hypothetical protein YP_001488356.1 3117772 R 315750 CDS YP_001488357.1 157693895 5622438 complement(3118159..3118353) 1 NC_009848.1 YvlC; bacteriophage shock protein C 3118353 pspC 5622438 pspC Bacillus pumilus SAFR-032 bacteriophage shock protein C YP_001488357.1 3118159 R 315750 CDS YP_001488358.1 157693896 5622439 complement(3118360..3119451) 1 NC_009848.1 YvlB; hypothetical protein 3119451 5622439 BPUM_3144 Bacillus pumilus SAFR-032 hypothetical protein YP_001488358.1 3118360 R 315750 CDS YP_001488359.1 157693897 5622440 complement(3119463..3119798) 1 NC_009848.1 YvlA; hypothetical protein 3119798 5622440 BPUM_3145 Bacillus pumilus SAFR-032 hypothetical protein YP_001488359.1 3119463 R 315750 CDS YP_001488360.1 157693898 5622441 3119996..3120226 1 NC_009848.1 YkvN; hypothetical protein 3120226 5622441 BPUM_3146 Bacillus pumilus SAFR-032 hypothetical protein YP_001488360.1 3119996 D 315750 CDS YP_001488361.1 157693899 5622442 complement(3120456..3123332) 1 NC_009848.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 3123332 uvrA 5622442 uvrA Bacillus pumilus SAFR-032 excinuclease ABC subunit A YP_001488361.1 3120456 R 315750 CDS YP_001488362.1 157693900 5622443 complement(3123340..3125325) 1 NC_009848.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 3125325 uvrB 5622443 uvrB Bacillus pumilus SAFR-032 excinuclease ABC subunit B YP_001488362.1 3123340 R 315750 CDS YP_001488363.1 157693901 5622444 complement(3125437..3125601) 1 NC_009848.1 hypothetical protein 3125601 5622444 BPUM_3149 Bacillus pumilus SAFR-032 hypothetical protein YP_001488363.1 3125437 R 315750 CDS YP_001488364.1 157693902 5622445 complement(3125620..3125865) 1 NC_009848.1 hypothetical protein 3125865 5622445 BPUM_3150 Bacillus pumilus SAFR-032 hypothetical protein YP_001488364.1 3125620 R 315750 CDS YP_001488365.1 157693903 5622446 3126150..3128681 1 NC_009848.1 YvkC; pyruvate, water dikinase 3128681 ppsA 5622446 ppsA Bacillus pumilus SAFR-032 pyruvate, water dikinase YP_001488365.1 3126150 D 315750 CDS YP_001488366.1 157693904 5622447 3128762..3129334 1 NC_009848.1 YvkB; TetR family transcriptional regulator 3129334 5622447 BPUM_3152 Bacillus pumilus SAFR-032 TetR family transcriptional regulator YP_001488366.1 3128762 D 315750 CDS YP_001488367.1 157693905 5622448 3129375..3130709 1 NC_009848.1 YvkA; major facilitator superfamily transporter 3130709 5622448 BPUM_3153 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001488367.1 3129375 D 315750 CDS YP_001488368.1 157693906 5622449 3130986..3131969 1 NC_009848.1 lipoprotein 3131969 5622449 BPUM_3154 Bacillus pumilus SAFR-032 lipoprotein YP_001488368.1 3130986 D 315750 CDS YP_001488369.1 157693907 5622450 3131966..3132652 1 NC_009848.1 YclJ; response regulator 3132652 5622450 BPUM_3155 Bacillus pumilus SAFR-032 response regulator YP_001488369.1 3131966 D 315750 CDS YP_001488370.1 157693908 5622451 3132649..3134067 1 NC_009848.1 sensor histidine kinase 3134067 5622451 BPUM_3156 Bacillus pumilus SAFR-032 sensor histidine kinase YP_001488370.1 3132649 D 315750 CDS YP_001488371.1 157693909 5622452 3134211..3136334 1 NC_009848.1 YkcB; glycosyltransferase 3136334 5622452 BPUM_3157 Bacillus pumilus SAFR-032 glycosyltransferase YP_001488371.1 3134211 D 315750 CDS YP_001488372.1 157693910 5622453 3136365..3137357 1 NC_009848.1 YkcC; glycosyltransferase 3137357 5622453 BPUM_3158 Bacillus pumilus SAFR-032 glycosyltransferase YP_001488372.1 3136365 D 315750 CDS YP_001488373.1 157693911 5622454 complement(3137404..3138753) 1 NC_009848.1 YvbW; APC family amino acid-polyamine-organocation transporter 3138753 5622454 BPUM_3159 Bacillus pumilus SAFR-032 APC family amino acid-polyamine-organocation transporter YP_001488373.1 3137404 R 315750 CDS YP_001488374.1 157693912 5622455 complement(3138933..3139061) 1 NC_009848.1 hypothetical protein 3139061 5622455 BPUM_3160 Bacillus pumilus SAFR-032 hypothetical protein YP_001488374.1 3138933 R 315750 CDS YP_001488375.1 157693913 5622456 complement(3139145..3139819) 1 NC_009848.1 YfkO; nitroreductase 3139819 5622456 BPUM_3161 Bacillus pumilus SAFR-032 nitroreductase YP_001488375.1 3139145 R 315750 CDS YP_001488376.1 157693914 5622457 3140051..3140416 1 NC_009848.1 YdeP; hypothetical protein 3140416 5622457 BPUM_3162 Bacillus pumilus SAFR-032 hypothetical protein YP_001488376.1 3140051 D 315750 CDS YP_001488377.1 157693915 5622458 complement(3140426..3141613) 1 NC_009848.1 hypothetical protein 3141613 5622458 BPUM_3163 Bacillus pumilus SAFR-032 hypothetical protein YP_001488377.1 3140426 R 315750 CDS YP_001488378.1 157693916 5622459 complement(3141682..3142035) 1 NC_009848.1 possible swarming motility protein YvzD; hypothetical protein 3142035 5622459 BPUM_3164 Bacillus pumilus SAFR-032 hypothetical protein YP_001488378.1 3141682 R 315750 CDS YP_001488379.1 157693917 5622460 3142023..3142136 1 NC_009848.1 hypothetical protein 3142136 5622460 BPUM_3165 Bacillus pumilus SAFR-032 hypothetical protein YP_001488379.1 3142023 D 315750 CDS YP_001488380.1 157693918 5622461 complement(3142380..3143828) 1 NC_009848.1 YvjB; peptidase 3143828 5622461 BPUM_3166 Bacillus pumilus SAFR-032 peptidase YP_001488380.1 3142380 R 315750 CDS YP_001488381.1 157693919 5622462 3143982..3144722 1 NC_009848.1 YdhB; hypothetical protein 3144722 5622462 BPUM_3167 Bacillus pumilus SAFR-032 hypothetical protein YP_001488381.1 3143982 D 315750 CDS YP_001488382.1 157693920 5622463 complement(3144773..3146038) 1 NC_009848.1 M23B subfamily peptidase 3146038 5622463 BPUM_3168 Bacillus pumilus SAFR-032 M23B subfamily peptidase YP_001488382.1 3144773 R 315750 CDS YP_001488383.1 157693921 5622464 complement(3146151..3147041) 1 NC_009848.1 cell division protein FtsX 3147041 ftsX 5622464 ftsX Bacillus pumilus SAFR-032 cell division protein FtsX YP_001488383.1 3146151 R 315750 CDS YP_001488384.1 157693922 5622465 complement(3147034..3147720) 1 NC_009848.1 cell-division ATP-binding protein 3147720 ftsE 5622465 ftsE Bacillus pumilus SAFR-032 cell-division ATP-binding protein YP_001488384.1 3147034 R 315750 CDS YP_001488385.1 157693923 5622466 3147796..3147951 1 NC_009848.1 hypothetical protein 3147951 5622466 BPUM_3171 Bacillus pumilus SAFR-032 hypothetical protein YP_001488385.1 3147796 D 315750 CDS YP_001488386.1 157693924 5622467 complement(3148101..3148430) 1 NC_009848.1 cytochrome c551 3148430 cccB 5622467 cccB Bacillus pumilus SAFR-032 cytochrome c551 YP_001488386.1 3148101 R 315750 CDS YP_001488387.1 157693925 5622468 complement(3148479..3149327) 1 NC_009848.1 YvjA; hypothetical protein 3149327 5622468 BPUM_3173 Bacillus pumilus SAFR-032 hypothetical protein YP_001488387.1 3148479 R 315750 CDS YP_001488388.1 157693926 5622469 complement(3149429..3149539) 1 NC_009848.1 hypothetical protein 3149539 5622469 BPUM_3174 Bacillus pumilus SAFR-032 hypothetical protein YP_001488388.1 3149429 R 315750 CDS YP_001488389.1 157693927 5622470 3149517..3150251 1 NC_009848.1 hypothetical protein 3150251 5622470 BPUM_3175 Bacillus pumilus SAFR-032 hypothetical protein YP_001488389.1 3149517 D 315750 CDS YP_001488390.1 157693928 5622471 complement(3150268..3152061) 1 NC_009848.1 M3B subfamily peptidase 3152061 yusX 5622471 yusX Bacillus pumilus SAFR-032 M3B subfamily peptidase YP_001488390.1 3150268 R 315750 CDS YP_001488391.1 157693929 5622472 complement(3152186..3153169) 1 NC_009848.1 peptide chain release factor RF2 3153169 prfB 5622472 prfB Bacillus pumilus SAFR-032 peptide chain release factor RF2 YP_001488391.1 3152186 R 315750 CDS YP_001488392.1 157693930 5622473 complement(3153355..3155880) 1 NC_009848.1 functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 3155880 secA 5622473 secA Bacillus pumilus SAFR-032 preprotein translocase subunit SecA YP_001488392.1 3153355 R 315750 CDS YP_001488393.1 157693931 5622474 complement(3156067..3156630) 1 NC_009848.1 Protein Y; ribosome-associated inhibitor A 3156630 raiA 5622474 raiA Bacillus pumilus SAFR-032 ribosome-associated inhibitor A YP_001488393.1 3156067 R 315750 CDS YP_001488394.1 157693932 5622475 complement(3156820..3158505) 1 NC_009848.1 methyl-accepting chemotaxis protein 3158505 5622475 BPUM_3180 Bacillus pumilus SAFR-032 methyl-accepting chemotaxis protein YP_001488394.1 3156820 R 315750 CDS YP_001488395.1 157693933 5622476 complement(3158538..3158918) 1 NC_009848.1 hypothetical protein 3158918 5622476 BPUM_3181 Bacillus pumilus SAFR-032 hypothetical protein YP_001488395.1 3158538 R 315750 CDS YP_001488396.1 157693934 5622477 complement(3158932..3159273) 1 NC_009848.1 flagellar protein FliT 3159273 fliT 5622477 fliT Bacillus pumilus SAFR-032 flagellar protein FliT YP_001488396.1 3158932 R 315750 CDS YP_001488397.1 157693935 5622478 complement(3159270..3159674) 1 NC_009848.1 flagellin specific chaperone; flagellar protein FliS 3159674 fliS 5622478 fliS Bacillus pumilus SAFR-032 flagellar protein FliS YP_001488397.1 3159270 R 315750 CDS YP_001488398.1 157693936 5622479 complement(3159692..3161206) 1 NC_009848.1 involved in flagellin assembly; flagellar capping protein 3161206 fliD 5622479 fliD Bacillus pumilus SAFR-032 flagellar capping protein YP_001488398.1 3159692 R 315750 CDS YP_001488399.1 157693937 5622480 complement(3161227..3161568) 1 NC_009848.1 possibly involved in flagella export; flagellar protein FlaG 3161568 flaG 5622480 flaG Bacillus pumilus SAFR-032 flagellar protein FlaG YP_001488399.1 3161227 R 315750 CDS YP_001488400.1 157693938 5622481 complement(3161730..3161954) 1 NC_009848.1 affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator 3161954 csrA 5622481 csrA Bacillus pumilus SAFR-032 carbon storage regulator YP_001488400.1 3161730 R 315750 CDS YP_001488401.1 157693939 5622482 complement(3161948..3162382) 1 NC_009848.1 binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW 3162382 5622482 BPUM_3187 Bacillus pumilus SAFR-032 flagellar assembly protein FliW YP_001488401.1 3161948 R 315750 CDS YP_001488402.1 157693940 5622483 complement(3162411..3162989) 1 NC_009848.1 YviE; hypothetical protein 3162989 5622483 BPUM_3188 Bacillus pumilus SAFR-032 hypothetical protein YP_001488402.1 3162411 R 315750 CDS YP_001488403.1 157693941 5622484 complement(3163038..3163949) 1 NC_009848.1 with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL 3163949 flgL 5622484 flgL Bacillus pumilus SAFR-032 flagellar hook-associated protein FlgL YP_001488403.1 3163038 R 315750 CDS YP_001488404.1 157693942 5622485 complement(3163959..3165479) 1 NC_009848.1 with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 3165479 flgK 5622485 flgK Bacillus pumilus SAFR-032 flagellar hook-associated protein FlgK YP_001488404.1 3163959 R 315750 CDS YP_001488405.1 157693943 5622486 complement(3165495..3165977) 1 NC_009848.1 hypothetical protein 3165977 yvyG 5622486 yvyG Bacillus pumilus SAFR-032 hypothetical protein YP_001488405.1 3165495 R 315750 CDS YP_001488406.1 157693944 5622487 complement(3165996..3166259) 1 NC_009848.1 anti-sigma-28 factor; transcriptional repressor FlgM 3166259 flgM 5622487 flgM Bacillus pumilus SAFR-032 transcriptional repressor FlgM YP_001488406.1 3165996 R 315750 CDS YP_001488407.1 157693945 5622488 complement(3166339..3166758) 1 NC_009848.1 YvyF; flagellar protein 3166758 5622488 BPUM_3193 Bacillus pumilus SAFR-032 flagellar protein YP_001488407.1 3166339 R 315750 CDS YP_001488408.1 157693946 5622489 complement(3166815..3167501) 1 NC_009848.1 competence protein FC 3167501 comFC 5622489 comFC Bacillus pumilus SAFR-032 competence protein FC YP_001488408.1 3166815 R 315750 CDS YP_001488409.1 157693947 5622490 complement(3167498..3167791) 1 NC_009848.1 competence protein FB 3167791 comFB 5622490 comFB Bacillus pumilus SAFR-032 competence protein FB YP_001488409.1 3167498 R 315750 CDS YP_001488410.1 157693948 5622491 complement(3167858..3169237) 1 NC_009848.1 competence protein FA 3169237 comFA 5622491 comFA Bacillus pumilus SAFR-032 competence protein FA YP_001488410.1 3167858 R 315750 CDS YP_001488411.1 157693949 5622492 complement(3169357..3170199) 1 NC_009848.1 YviA; hypothetical protein 3170199 degV 5622492 degV Bacillus pumilus SAFR-032 hypothetical protein YP_001488411.1 3169357 R 315750 CDS YP_001488412.1 157693950 5622493 complement(3170417..3171106) 1 NC_009848.1 response regulator DegU 3171106 degU 5622493 degU Bacillus pumilus SAFR-032 response regulator DegU YP_001488412.1 3170417 R 315750 CDS YP_001488413.1 157693951 5622494 complement(3171171..3172346) 1 NC_009848.1 sensor histidine kinase DegS 3172346 degS 5622494 degS Bacillus pumilus SAFR-032 sensor histidine kinase DegS YP_001488413.1 3171171 R 315750 CDS YP_001488414.1 157693952 5622495 3172568..3173236 1 NC_009848.1 YvyE; hypothetical protein 3173236 5622495 BPUM_3200 Bacillus pumilus SAFR-032 hypothetical protein YP_001488414.1 3172568 D 315750 CDS YP_001488415.1 157693953 5622496 3173221..3174312 1 NC_009848.1 YvhJ; transcriptional attenuator 3174312 5622496 BPUM_3201 Bacillus pumilus SAFR-032 transcriptional attenuator YP_001488415.1 3173221 D 315750 CDS YP_001488416.1 157693954 5622497 complement(3174348..3175415) 1 NC_009848.1 TagO; phospho-N-acetylmuramoyl-pentapeptide- transferase 3175415 mraY2 5622497 mraY2 Bacillus pumilus SAFR-032 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_001488416.1 3174348 R 315750 CDS YP_001488417.1 157693955 5622498 complement(3175546..3176745) 1 NC_009848.1 glycosyltransferase 3176745 tuaH 5622498 tuaH Bacillus pumilus SAFR-032 glycosyltransferase YP_001488417.1 3175546 R 315750 CDS YP_001488418.1 157693956 5622499 complement(3176762..3177517) 1 NC_009848.1 YvhG; family 2 glycosyltransferase 3177517 tuaG 5622499 tuaG Bacillus pumilus SAFR-032 family 2 glycosyltransferase YP_001488418.1 3176762 R 315750 CDS YP_001488419.1 157693957 5622500 complement(3177542..3178219) 1 NC_009848.1 hypothetical protein 3178219 tuaF 5622500 tuaF Bacillus pumilus SAFR-032 hypothetical protein YP_001488419.1 3177542 R 315750 CDS YP_001488420.1 157693958 5622501 complement(3178292..3179749) 1 NC_009848.1 possible lipopolysaccharide biosynthesis protein TuaE; hypothetical protein 3179749 5622501 BPUM_3206 Bacillus pumilus SAFR-032 hypothetical protein YP_001488420.1 3178292 R 315750 CDS YP_001488421.1 157693959 5622502 complement(3179789..3180718) 1 NC_009848.1 UDP-glucose 4-epimerase 3180718 galE2 5622502 galE2 Bacillus pumilus SAFR-032 UDP-glucose 4-epimerase YP_001488421.1 3179789 R 315750 CDS YP_001488422.1 157693960 5622503 complement(3180737..3182071) 1 NC_009848.1 UDP-glucose 6-dehydrogenase 3182071 tuaD 5622503 tuaD Bacillus pumilus SAFR-032 UDP-glucose 6-dehydrogenase YP_001488422.1 3180737 R 315750 CDS YP_001488423.1 157693961 5622504 complement(3182151..3183335) 1 NC_009848.1 glycosyltransferase 3183335 tuaC 5622504 tuaC Bacillus pumilus SAFR-032 glycosyltransferase YP_001488423.1 3182151 R 315750 CDS YP_001488424.1 157693962 5622505 complement(3183332..3184783) 1 NC_009848.1 colanic acid exporter 3184783 tuaB 5622505 tuaB Bacillus pumilus SAFR-032 colanic acid exporter YP_001488424.1 3183332 R 315750 CDS YP_001488425.1 157693963 5622506 complement(3184802..3185461) 1 NC_009848.1 sugar transferase 3185461 tuaA 5622506 tuaA Bacillus pumilus SAFR-032 sugar transferase YP_001488425.1 3184802 R 315750 CDS YP_001488426.1 157693964 5622508 complement(3185815..3186246) 1 NC_009848.1 hypothetical protein 3186246 5622508 BPUM_3213 Bacillus pumilus SAFR-032 hypothetical protein YP_001488426.1 3185815 R 315750 CDS YP_001488427.1 157693965 5622509 complement(3186470..3187960) 1 NC_009848.1 major autolysin LytC; N-acetylmuramoyl-L-alanine amidase 3187960 lytC 5622509 lytC Bacillus pumilus SAFR-032 N-acetylmuramoyl-L-alanine amidase YP_001488427.1 3186470 R 315750 CDS YP_001488428.1 157693966 5622510 complement(3187983..3190091) 1 NC_009848.1 stage II sporulation protein 3190091 lytB 5622510 lytB Bacillus pumilus SAFR-032 stage II sporulation protein YP_001488428.1 3187983 R 315750 CDS YP_001488429.1 157693967 5622511 complement(3190113..3190436) 1 NC_009848.1 lipoprotein 3190436 5622511 BPUM_3216 Bacillus pumilus SAFR-032 lipoprotein YP_001488429.1 3190113 R 315750 CDS YP_001488430.1 157693968 5622512 3190619..3191539 1 NC_009848.1 attenuator function for control of operon expression; membrane-bound transcriptional regulator LytR 3191539 lytR 5622512 lytR Bacillus pumilus SAFR-032 membrane-bound transcriptional regulator LytR YP_001488430.1 3190619 D 315750 CDS YP_001488431.1 157693969 5622513 complement(3191622..3192761) 1 NC_009848.1 YvyH; UDP-N-acetylglucosamine 2-epimerase 3192761 mnaA 5622513 mnaA Bacillus pumilus SAFR-032 UDP-N-acetylglucosamine 2-epimerase YP_001488431.1 3191622 R 315750 CDS YP_001488432.1 157693970 5622514 3193001..3193882 1 NC_009848.1 UTP--glucose-1-phosphate uridylyltransferase 3193882 gtaB 5622514 gtaB Bacillus pumilus SAFR-032 UTP--glucose-1-phosphate uridylyltransferase YP_001488432.1 3193001 D 315750 CDS YP_001488433.1 157693971 5622515 complement(3193909..3195510) 1 NC_009848.1 with TagG is involved in the export of teichoic acids; teichoic acids export protein ATP-binding subunit 3195510 tagH 5622515 tagH Bacillus pumilus SAFR-032 teichoic acids export protein ATP-binding subunit YP_001488433.1 3193909 R 315750 CDS YP_001488434.1 157693972 5622516 complement(3195530..3196357) 1 NC_009848.1 ABC transporter ATP-binding protein 3196357 tagG 5622516 tagG Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488434.1 3195530 R 315750 CDS YP_001488435.1 157693973 5622517 complement(3196510..3198342) 1 NC_009848.1 glycosyltransferase 3198342 5622517 BPUM_3222 Bacillus pumilus SAFR-032 glycosyltransferase YP_001488435.1 3196510 R 315750 CDS YP_001488436.1 157693974 5622518 complement(3198329..3199507) 1 NC_009848.1 aminotransferase 3199507 5622518 BPUM_3223 Bacillus pumilus SAFR-032 aminotransferase YP_001488436.1 3198329 R 315750 CDS YP_001488437.1 157693975 5622519 complement(3199508..3200788) 1 NC_009848.1 carbamoylphosphate synthase large subunit short form 3200788 5622519 BPUM_3224 Bacillus pumilus SAFR-032 carbamoylphosphate synthase large subunit short form YP_001488437.1 3199508 R 315750 CDS YP_001488438.1 157693976 5622520 complement(3200801..3202804) 1 NC_009848.1 teichoic acid biosynthesis protein F; CDP-glycerol glycerophosphotransferase 3202804 5622520 BPUM_3225 Bacillus pumilus SAFR-032 CDP-glycerol glycerophosphotransferase YP_001488438.1 3200801 R 315750 CDS YP_001488439.1 157693977 5622521 complement(3202901..3203962) 1 NC_009848.1 dTDP-glucose 4,6-dehydratase 3203962 rfbB 5622521 rfbB Bacillus pumilus SAFR-032 dTDP-glucose 4,6-dehydratase YP_001488439.1 3202901 R 315750 CDS YP_001488440.1 157693978 5622522 complement(3203982..3204866) 1 NC_009848.1 glucose-1-phosphate thymidylyltransferase 3204866 5622522 BPUM_3227 Bacillus pumilus SAFR-032 glucose-1-phosphate thymidylyltransferase YP_001488440.1 3203982 R 315750 CDS YP_001488441.1 157693979 5622523 complement(3205081..3207336) 1 NC_009848.1 CDP-glycerol glycerophosphotransferase 3207336 tagF 5622523 tagF Bacillus pumilus SAFR-032 CDP-glycerol glycerophosphotransferase YP_001488441.1 3205081 R 315750 CDS YP_001488442.1 157693980 5622524 complement(3207424..3209454) 1 NC_009848.1 poly(glycerol-phosphate) alpha-glucosyltransferase 3209454 tagE 5622524 tagE Bacillus pumilus SAFR-032 poly(glycerol-phosphate) alpha-glucosyltransferase YP_001488442.1 3207424 R 315750 CDS YP_001488443.1 157693981 5622525 complement(3209547..3209945) 1 NC_009848.1 teichoic acid synthase; glycerol-3-phosphate cytidylyltransferase 3209945 tagD 5622525 tagD Bacillus pumilus SAFR-032 glycerol-3-phosphate cytidylyltransferase YP_001488443.1 3209547 R 315750 CDS YP_001488444.1 157693982 5622526 3210306..3211076 1 NC_009848.1 teichoic acid synthase; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D- mannosaminyltransferase 3211076 tagA 5622526 tagA Bacillus pumilus SAFR-032 N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D- mannosaminyltransferase YP_001488444.1 3210306 D 315750 CDS YP_001488445.1 157693983 5622527 3211088..3212275 1 NC_009848.1 teichoic acid synthase; CDP-glycerol glycerophosphotransferase 3212275 tagB 5622527 tagB Bacillus pumilus SAFR-032 CDP-glycerol glycerophosphotransferase YP_001488445.1 3211088 D 315750 CDS YP_001488446.1 157693984 5622528 complement(3212293..3214923) 1 NC_009848.1 beta-N-acetylhexosaminidase 3214923 lytD 5622528 lytD Bacillus pumilus SAFR-032 beta-N-acetylhexosaminidase YP_001488446.1 3212293 R 315750 CDS YP_001488447.1 157693985 5622529 3215244..3218858 1 NC_009848.1 glycosyltransferase 3218858 tagFA 5622529 tagFA Bacillus pumilus SAFR-032 glycosyltransferase YP_001488447.1 3215244 D 315750 CDS YP_001488448.1 157693986 5622530 complement(3218924..3219874) 1 NC_009848.1 mannose-6-phosphate isomerase 3219874 pmi 5622530 pmi Bacillus pumilus SAFR-032 mannose-6-phosphate isomerase YP_001488448.1 3218924 R 315750 CDS YP_001488449.1 157693987 5622531 complement(3220021..3220842) 1 NC_009848.1 sugar ABC transporter ATP-binding protein 3220842 5622531 BPUM_3236 Bacillus pumilus SAFR-032 sugar ABC transporter ATP-binding protein YP_001488449.1 3220021 R 315750 CDS YP_001488450.1 157693988 5622532 complement(3220839..3221810) 1 NC_009848.1 sugar ABC transporter ATP-binding protein 3221810 5622532 BPUM_3237 Bacillus pumilus SAFR-032 sugar ABC transporter ATP-binding protein YP_001488450.1 3220839 R 315750 CDS YP_001488451.1 157693989 5622533 complement(3221866..3223131) 1 NC_009848.1 sugar ABC transporter ATP-binding protein 3223131 5622533 BPUM_3238 Bacillus pumilus SAFR-032 sugar ABC transporter ATP-binding protein YP_001488451.1 3221866 R 315750 CDS YP_001488452.1 157693990 5622534 complement(3223234..3224652) 1 NC_009848.1 response regulator 3224652 5622534 BPUM_3239 Bacillus pumilus SAFR-032 response regulator YP_001488452.1 3223234 R 315750 CDS YP_001488453.1 157693991 5622535 complement(3224646..3225920) 1 NC_009848.1 sensor histidine kinase 3225920 5622535 BPUM_3240 Bacillus pumilus SAFR-032 sensor histidine kinase YP_001488453.1 3224646 R 315750 CDS YP_001488454.1 157693992 5622536 complement(3226085..3227089) 1 NC_009848.1 sugar ABC transporter ATP-binding protein 3227089 5622536 BPUM_3241 Bacillus pumilus SAFR-032 sugar ABC transporter ATP-binding protein YP_001488454.1 3226085 R 315750 CDS YP_001488455.1 157693993 5622537 complement(3227154..3227621) 1 NC_009848.1 GNAT family acetyltransferase 3227621 ysnE 5622537 ysnE Bacillus pumilus SAFR-032 GNAT family acetyltransferase YP_001488455.1 3227154 R 315750 CDS YP_001488456.1 157693994 5622538 complement(3227731..3228330) 1 NC_009848.1 2-keto-3-deoxygluconate-6-phosphate aldolase 3228330 kdgA 5622538 kdgA Bacillus pumilus SAFR-032 2-keto-3-deoxygluconate-6-phosphate aldolase YP_001488456.1 3227731 R 315750 CDS YP_001488457.1 157693995 5622539 complement(3228302..3229318) 1 NC_009848.1 2-dehydro-3-deoxygluconokinase 3229318 kdgK 5622539 kdgK Bacillus pumilus SAFR-032 2-dehydro-3-deoxygluconokinase YP_001488457.1 3228302 R 315750 CDS YP_001488458.1 157693996 5622540 complement(3229405..3230415) 1 NC_009848.1 PurR family transcriptional regulator 3230415 kdgR 5622540 kdgR Bacillus pumilus SAFR-032 PurR family transcriptional regulator YP_001488458.1 3229405 R 315750 CDS YP_001488459.1 157693997 5622541 3230678..3231505 1 NC_009848.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 3231505 kduI 5622541 kduI Bacillus pumilus SAFR-032 5-keto-4-deoxyuronate isomerase YP_001488459.1 3230678 D 315750 CDS YP_001488460.1 157693998 5622542 3231510..3232283 1 NC_009848.1 Involved in the metabolism of 2-deoxyglucose; 2-deoxy-D-gluconate 3-dehydrogenase 3232283 kduD 5622542 kduD Bacillus pumilus SAFR-032 2-deoxy-D-gluconate 3-dehydrogenase YP_001488460.1 3231510 D 315750 CDS YP_001488461.1 157693999 5622543 3232389..3233855 1 NC_009848.1 spore germination protein B1; spore germination protein BA 3233855 gerBA 5622543 gerBA Bacillus pumilus SAFR-032 spore germination protein BA YP_001488461.1 3232389 D 315750 CDS YP_001488462.1 157694000 5622544 3233859..3234959 1 NC_009848.1 spore germination protein BB 3234959 gerBB 5622544 gerBB Bacillus pumilus SAFR-032 spore germination protein BB YP_001488462.1 3233859 D 315750 CDS YP_001488463.1 157694001 5622545 3234956..3236101 1 NC_009848.1 spore germination protein BC 3236101 gerBC 5622545 gerBC Bacillus pumilus SAFR-032 spore germination protein BC YP_001488463.1 3234956 D 315750 CDS YP_001488464.1 157694002 5622546 complement(3236114..3237652) 1 NC_009848.1 glycosyltransferase 3237652 5622546 BPUM_3251 Bacillus pumilus SAFR-032 glycosyltransferase YP_001488464.1 3236114 R 315750 CDS YP_001488465.1 157694003 5622547 complement(3237649..3239013) 1 NC_009848.1 sugar transporter; major facilitator superfamily transporter 3239013 ywtG 5622547 ywtG Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001488465.1 3237649 R 315750 CDS YP_001488466.1 157694004 5622548 3239284..3240249 1 NC_009848.1 LytR family transcriptional regulator 3240249 ywtF 5622548 ywtF Bacillus pumilus SAFR-032 LytR family transcriptional regulator YP_001488466.1 3239284 D 315750 CDS YP_001488467.1 157694005 5622549 3240418..3241320 1 NC_009848.1 HAD family hydrolase 3241320 ywtE 5622549 ywtE Bacillus pumilus SAFR-032 HAD family hydrolase YP_001488467.1 3240418 D 315750 CDS YP_001488468.1 157694006 5622550 complement(3241377..3242600) 1 NC_009848.1 gamma-glutamyl DD-amidohydrolase, poly-gamma-glutamate hydrolase PgdS; C40 family peptidase 3242600 ywtD 5622550 ywtD Bacillus pumilus SAFR-032 C40 family peptidase YP_001488468.1 3241377 R 315750 CDS YP_001488469.1 157694007 5622551 complement(3242708..3242878) 1 NC_009848.1 poly-gamma-glutamate synthesis protein YwtC 3242878 ywtC 5622551 ywtC Bacillus pumilus SAFR-032 poly-gamma-glutamate synthesis protein YwtC YP_001488469.1 3242708 R 315750 CDS YP_001488470.1 157694008 5622552 complement(3242875..3244041) 1 NC_009848.1 PgsA; poly-gamma-glutamate synthesis protein YwtB 3244041 ywtB 5622552 ywtB Bacillus pumilus SAFR-032 poly-gamma-glutamate synthesis protein YwtB YP_001488470.1 3242875 R 315750 CDS YP_001488471.1 157694009 5622553 complement(3244060..3244509) 1 NC_009848.1 PgsC; poly-gamma-glutamate synthesis protein YwtA 3244509 ywtA 5622553 ywtA Bacillus pumilus SAFR-032 poly-gamma-glutamate synthesis protein YwtA YP_001488471.1 3244060 R 315750 CDS YP_001488472.1 157694010 5622554 complement(3244525..3245706) 1 NC_009848.1 gamma-polyglutamic acid synthetase PgsB CapB; capsule biosynthesis protein YwsC 3245706 ywsC 5622554 ywsC Bacillus pumilus SAFR-032 capsule biosynthesis protein YwsC YP_001488472.1 3244525 R 315750 CDS YP_001488473.1 157694011 5622555 3246452..3247933 1 NC_009848.1 spore germination protein KA 3247933 gerKA 5622555 gerKA Bacillus pumilus SAFR-032 spore germination protein KA YP_001488473.1 3246452 D 315750 CDS YP_001488474.1 157694012 5622556 3247923..3249020 1 NC_009848.1 spore germination protein KB 3249020 gerKB 5622556 gerKB Bacillus pumilus SAFR-032 spore germination protein KB YP_001488474.1 3247923 D 315750 CDS YP_001488475.1 157694013 5622557 3249010..3250152 1 NC_009848.1 spore germination protein KC 3250152 gerKC 5622557 gerKC Bacillus pumilus SAFR-032 spore germination protein KC YP_001488475.1 3249010 D 315750 CDS YP_001488476.1 157694014 5622558 3250270..3251256 1 NC_009848.1 LacI family transcriptional regulator 3251256 rbsR 5622558 rbsR Bacillus pumilus SAFR-032 LacI family transcriptional regulator YP_001488476.1 3250270 D 315750 CDS YP_001488477.1 157694015 5622559 3251253..3252131 1 NC_009848.1 ribokinase 3252131 rbsK 5622559 rbsK Bacillus pumilus SAFR-032 ribokinase YP_001488477.1 3251253 D 315750 CDS YP_001488478.1 157694016 5622560 3252128..3252520 1 NC_009848.1 ribose ABC transporter ATP-binding protein 3252520 rbsD 5622560 rbsD Bacillus pumilus SAFR-032 ribose ABC transporter ATP-binding protein YP_001488478.1 3252128 D 315750 CDS YP_001488479.1 157694017 5622561 3252536..3254017 1 NC_009848.1 ribose ABC transporter ATP-binding protein 3254017 rbsA 5622561 rbsA Bacillus pumilus SAFR-032 ribose ABC transporter ATP-binding protein YP_001488479.1 3252536 D 315750 CDS YP_001488480.1 157694018 5622562 3254019..3254972 1 NC_009848.1 ribose ABC transporter ATP-binding protein 3254972 rbsC 5622562 rbsC Bacillus pumilus SAFR-032 ribose ABC transporter ATP-binding protein YP_001488480.1 3254019 D 315750 CDS YP_001488481.1 157694019 5622563 3254986..3255903 1 NC_009848.1 ribose ABC transporter ATP-binding protein 3255903 rbsB 5622563 rbsB Bacillus pumilus SAFR-032 ribose ABC transporter ATP-binding protein YP_001488481.1 3254986 D 315750 CDS YP_001488482.1 157694020 5622564 complement(3256142..3256744) 1 NC_009848.1 hypothetical protein 3256744 ywrF 5622564 ywrF Bacillus pumilus SAFR-032 hypothetical protein YP_001488482.1 3256142 R 315750 CDS YP_001488483.1 157694021 5622565 complement(3256810..3257706) 1 NC_009848.1 LysR family transcriptional regulator 3257706 alsR 5622565 alsR Bacillus pumilus SAFR-032 LysR family transcriptional regulator YP_001488483.1 3256810 R 315750 CDS YP_001488484.1 157694022 5622566 3257857..3259557 1 NC_009848.1 catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase 3259557 alsS 5622566 alsS Bacillus pumilus SAFR-032 acetolactate synthase YP_001488484.1 3257857 D 315750 CDS YP_001488485.1 157694023 5622567 3259593..3260363 1 NC_009848.1 acetolactate decarboxylase 3260363 alsD 5622567 alsD Bacillus pumilus SAFR-032 acetolactate decarboxylase YP_001488485.1 3259593 D 315750 CDS YP_001488486.1 157694024 5622568 3260481..3260993 1 NC_009848.1 Lrp/AsnC family transcriptional regulator 3260993 ywrC 5622568 ywrC Bacillus pumilus SAFR-032 Lrp/AsnC family transcriptional regulator YP_001488486.1 3260481 D 315750 CDS YP_001488487.1 157694025 5622569 3261040..3261591 1 NC_009848.1 CHR family chromate ion transporter 3261591 ywrB 5622569 ywrB Bacillus pumilus SAFR-032 CHR family chromate ion transporter YP_001488487.1 3261040 D 315750 CDS YP_001488488.1 157694026 5622570 3261588..3262124 1 NC_009848.1 CHR family chromate ion transporter 3262124 ywrA 5622570 ywrA Bacillus pumilus SAFR-032 CHR family chromate ion transporter YP_001488488.1 3261588 D 315750 CDS YP_001488489.1 157694027 5622571 complement(3262160..3263479) 1 NC_009848.1 UDP-glucose 6-dehydrogenase 3263479 ywqF 5622571 ywqF Bacillus pumilus SAFR-032 UDP-glucose 6-dehydrogenase YP_001488489.1 3262160 R 315750 CDS YP_001488490.1 157694028 5622572 complement(3263596..3263739) 1 NC_009848.1 hypothetical protein 3263739 5622572 BPUM_3277 Bacillus pumilus SAFR-032 hypothetical protein YP_001488490.1 3263596 R 315750 CDS YP_001488491.1 157694029 5622573 3263926..3265533 1 NC_009848.1 hypothetical protein 3265533 ywqB 5622573 ywqB Bacillus pumilus SAFR-032 hypothetical protein YP_001488491.1 3263926 D 315750 CDS YP_001488492.1 157694030 5622574 3265520..3268297 1 NC_009848.1 HepA; SNF2 family helicase 3268297 ywqA 5622574 ywqA Bacillus pumilus SAFR-032 SNF2 family helicase YP_001488492.1 3265520 D 315750 CDS YP_001488493.1 157694031 5622575 complement(3268368..3269156) 1 NC_009848.1 hypothetical protein 3269156 ytvA2 5622575 ytvA2 Bacillus pumilus SAFR-032 hypothetical protein YP_001488493.1 3268368 R 315750 CDS YP_001488494.1 157694032 5622576 complement(3269310..3270134) 1 NC_009848.1 HAD family hydrolase 3270134 ywpJ 5622576 ywpJ Bacillus pumilus SAFR-032 HAD family hydrolase YP_001488494.1 3269310 R 315750 CDS YP_001488495.1 157694033 5622577 3270241..3270396 1 NC_009848.1 hypothetical protein 3270396 5622577 BPUM_3282 Bacillus pumilus SAFR-032 hypothetical protein YP_001488495.1 3270241 D 315750 CDS YP_001488496.1 157694034 5622578 complement(3270541..3270918) 1 NC_009848.1 hypothetical protein 3270918 ywpG 5622578 ywpG Bacillus pumilus SAFR-032 hypothetical protein YP_001488496.1 3270541 R 315750 CDS YP_001488497.1 157694035 5622579 3271015..3271425 1 NC_009848.1 hypothetical protein 3271425 ywpF 5622579 ywpF Bacillus pumilus SAFR-032 hypothetical protein YP_001488497.1 3271015 D 315750 CDS YP_001488498.1 157694036 5622580 complement(3271615..3272010) 1 NC_009848.1 large conductance mechanosensitive channel protein YwpC; MscL family large conductance mechanosensitive ion channel protein 3272010 mscL 5622580 mscL Bacillus pumilus SAFR-032 MscL family large conductance mechanosensitive ion channel protein YP_001488498.1 3271615 R 315750 CDS YP_001488499.1 157694037 5622581 complement(3272137..3272571) 1 NC_009848.1 3-hydroxydecanoyl-ACP dehydratase 3272571 fabZ 5622581 fabZ Bacillus pumilus SAFR-032 3-hydroxydecanoyl-ACP dehydratase YP_001488499.1 3272137 R 315750 CDS YP_001488500.1 157694038 5622582 3272790..3273845 1 NC_009848.1 aspartate phosphatase response regulator 3273845 rapD1 5622582 rapD1 Bacillus pumilus SAFR-032 aspartate phosphatase response regulator YP_001488500.1 3272790 D 315750 CDS YP_001488501.1 157694039 5622583 complement(3273860..3274678) 1 NC_009848.1 flagellar hook-basal body protein 3274678 flhP 5622583 flhP Bacillus pumilus SAFR-032 flagellar hook-basal body protein YP_001488501.1 3273860 R 315750 CDS YP_001488502.1 157694040 5622584 complement(3274709..3275548) 1 NC_009848.1 flagellar basal-body rod protein 3275548 flhO 5622584 flhO Bacillus pumilus SAFR-032 flagellar basal-body rod protein YP_001488502.1 3274709 R 315750 CDS YP_001488503.1 157694041 5622585 complement(3275673..3276674) 1 NC_009848.1 rod shape-determining protein Mbl 3276674 mbl 5622585 mbl Bacillus pumilus SAFR-032 rod shape-determining protein Mbl YP_001488503.1 3275673 R 315750 CDS YP_001488504.1 157694042 5622586 complement(3276859..3277137) 1 NC_009848.1 stage III sporulation protein D 3277137 spoIIID 5622586 spoIIID Bacillus pumilus SAFR-032 stage III sporulation protein D YP_001488504.1 3276859 R 315750 CDS YP_001488505.1 157694043 5622587 3277476..3277889 1 NC_009848.1 MarR family transcriptional regulator 3277889 ywoH 5622587 ywoH Bacillus pumilus SAFR-032 MarR family transcriptional regulator YP_001488505.1 3277476 D 315750 CDS YP_001488506.1 157694044 5622588 3277903..3279090 1 NC_009848.1 possible quinolone resistance protein; major facilitator superfamily transporter 3279090 ywoG 5622588 ywoG Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001488506.1 3277903 D 315750 CDS YP_001488507.1 157694045 5622589 3279165..3279794 1 NC_009848.1 possible acid phosphatase/vanadium-dependent haloperoxidase BcrC; phosphatase 3279794 ywoA 5622589 ywoA Bacillus pumilus SAFR-032 phosphatase YP_001488507.1 3279165 D 315750 CDS YP_001488508.1 157694046 5622590 complement(3279832..3281220) 1 NC_009848.1 major facilitator superfamily transporter 3281220 ywoD 5622590 ywoD Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001488508.1 3279832 R 315750 CDS YP_001488509.1 157694047 5622591 3281399..3282286 1 NC_009848.1 PbpB; amino acid ABC transporter ATP-binding protein 3282286 5622591 BPUM_3296 Bacillus pumilus SAFR-032 amino acid ABC transporter ATP-binding protein YP_001488509.1 3281399 D 315750 CDS YP_001488510.1 157694048 5622592 3282327..3283004 1 NC_009848.1 amino acid ABC transporter ATP-binding protein 3283004 5622592 BPUM_3297 Bacillus pumilus SAFR-032 amino acid ABC transporter ATP-binding protein YP_001488510.1 3282327 D 315750 CDS YP_001488511.1 157694049 5622593 3282958..3283755 1 NC_009848.1 glutamine ABC transporter ATP-binding protein 3283755 glnQ2 5622593 glnQ2 Bacillus pumilus SAFR-032 glutamine ABC transporter ATP-binding protein YP_001488511.1 3282958 D 315750 CDS YP_001488512.1 157694050 5622594 3283777..3283962 1 NC_009848.1 hypothetical protein 3283962 5622594 BPUM_3299 Bacillus pumilus SAFR-032 hypothetical protein YP_001488512.1 3283777 D 315750 CDS YP_001488513.1 157694051 5622595 3283949..3285157 1 NC_009848.1 ammonium transporter 3285157 nrgA 5622595 nrgA Bacillus pumilus SAFR-032 ammonium transporter YP_001488513.1 3283949 D 315750 CDS YP_001488514.1 157694052 5622596 3285176..3285523 1 NC_009848.1 nitrogen-regulated PII-like protein 3285523 nrgB 5622596 nrgB Bacillus pumilus SAFR-032 nitrogen-regulated PII-like protein YP_001488514.1 3285176 D 315750 CDS YP_001488515.1 157694053 5622597 complement(3285603..3286499) 1 NC_009848.1 stage II sporulation membrane protein Q 3286499 spoIIQ 5622597 spoIIQ Bacillus pumilus SAFR-032 stage II sporulation membrane protein Q YP_001488515.1 3285603 R 315750 CDS YP_001488516.1 157694054 5622598 3286631..3287125 1 NC_009848.1 phosphinothricin acetyltransferase; acetyltransferase 3287125 ywnH 5622598 ywnH Bacillus pumilus SAFR-032 acetyltransferase YP_001488516.1 3286631 D 315750 CDS YP_001488517.1 157694055 5622599 complement(3287360..3287890) 1 NC_009848.1 hypothetical protein 3287890 5622599 BPUM_3304 Bacillus pumilus SAFR-032 hypothetical protein YP_001488517.1 3287360 R 315750 CDS YP_001488518.1 157694056 5622600 complement(3287887..3288444) 1 NC_009848.1 possible methylamine utilisation protein MauE; hypothetical protein 3288444 5622600 BPUM_3305 Bacillus pumilus SAFR-032 hypothetical protein YP_001488518.1 3287887 R 315750 CDS YP_001488519.1 157694057 5622601 complement(3288446..3290257) 1 NC_009848.1 ABC transporter ATP-binding protein 3290257 ygaD 5622601 ygaD Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488519.1 3288446 R 315750 CDS YP_001488520.1 157694058 5622602 3290302..3290853 1 NC_009848.1 hypothetical protein 3290853 5622602 BPUM_3307 Bacillus pumilus SAFR-032 hypothetical protein YP_001488520.1 3290302 D 315750 CDS YP_001488521.1 157694059 5622603 complement(3290899..3291303) 1 NC_009848.1 hypothetical protein 3291303 5622603 BPUM_3308 Bacillus pumilus SAFR-032 hypothetical protein YP_001488521.1 3290899 R 315750 CDS YP_001488522.1 157694060 5622604 3291831..3292253 1 NC_009848.1 hypothetical protein 3292253 ywnG 5622604 ywnG Bacillus pumilus SAFR-032 hypothetical protein YP_001488522.1 3291831 D 315750 CDS YP_001488523.1 157694061 5622605 3292396..3292545 1 NC_009848.1 in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 3292545 rpmG 5622605 rpmG Bacillus pumilus SAFR-032 50S ribosomal protein L33 YP_001488523.1 3292396 D 315750 CDS YP_001488524.1 157694062 5622606 3292627..3293823 1 NC_009848.1 cobalamin synthesis protein 3293823 yciC 5622606 yciC Bacillus pumilus SAFR-032 cobalamin synthesis protein YP_001488524.1 3292627 D 315750 CDS YP_001488525.1 157694063 5622607 3293840..3294109 1 NC_009848.1 YhzA; 30S ribosomal protein S14 3294109 rpsN2 5622607 rpsN2 Bacillus pumilus SAFR-032 30S ribosomal protein S14 YP_001488525.1 3293840 D 315750 CDS YP_001488526.1 157694064 5622608 complement(3294184..3294363) 1 NC_009848.1 hypothetical protein 3294363 5622608 BPUM_3313 Bacillus pumilus SAFR-032 hypothetical protein YP_001488526.1 3294184 R 315750 CDS YP_001488527.1 157694065 5622609 complement(3294363..3295370) 1 NC_009848.1 together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A 3295370 moaA 5622609 moaA Bacillus pumilus SAFR-032 molybdenum cofactor biosynthesis protein A YP_001488527.1 3294363 R 315750 CDS YP_001488528.1 157694066 5622610 complement(3295381..3296169) 1 NC_009848.1 involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein 3296169 fdhD 5622610 fdhD Bacillus pumilus SAFR-032 formate dehydrogenase accessory protein YP_001488528.1 3295381 R 315750 CDS YP_001488529.1 157694067 5622611 3296304..3297569 1 NC_009848.1 major facilitator superfamily oxalate:formate antiporter 3297569 ybfB 5622611 ybfB Bacillus pumilus SAFR-032 major facilitator superfamily oxalate:formate antiporter YP_001488529.1 3296304 D 315750 CDS YP_001488530.1 157694068 5622612 3297652..3300000 1 NC_009848.1 dehydrogenase alpha (molybdopterin) subunit 3300000 5622612 BPUM_3317 Bacillus pumilus SAFR-032 dehydrogenase alpha (molybdopterin) subunit YP_001488530.1 3297652 D 315750 CDS YP_001488531.1 157694069 5622613 complement(3300053..3300730) 1 NC_009848.1 possible D-amino acid dehydrogenase, large subunit; hypothetical protein 3300730 ywmD 5622613 ywmD Bacillus pumilus SAFR-032 hypothetical protein YP_001488531.1 3300053 R 315750 CDS YP_001488532.1 157694070 5622614 complement(3300813..3301514) 1 NC_009848.1 possible D-amino acid dehydrogenase, large subunit; hypothetical protein 3301514 ywmC 5622614 ywmC Bacillus pumilus SAFR-032 hypothetical protein YP_001488532.1 3300813 R 315750 CDS YP_001488533.1 157694071 5622615 complement(3301837..3302862) 1 NC_009848.1 stage II sporulation protein D 3302862 spoIID 5622615 spoIID Bacillus pumilus SAFR-032 stage II sporulation protein D YP_001488533.1 3301837 R 315750 CDS YP_001488534.1 157694072 5622616 complement(3303118..3304425) 1 NC_009848.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3304425 murAA 5622616 murAA Bacillus pumilus SAFR-032 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001488534.1 3303118 R 315750 CDS YP_001488535.1 157694073 5622617 complement(3304458..3305192) 1 NC_009848.1 hypothetical protein 3305192 ywmB 5622617 ywmB Bacillus pumilus SAFR-032 hypothetical protein YP_001488535.1 3304458 R 315750 CDS YP_001488536.1 157694074 5622618 complement(3305321..3305551) 1 NC_009848.1 hypothetical protein 3305551 ywzB 5622618 ywzB Bacillus pumilus SAFR-032 hypothetical protein YP_001488536.1 3305321 R 315750 CDS YP_001488537.1 157694075 5622619 3305689..3306195 1 NC_009848.1 hypothetical protein 3306195 ywmA 5622619 ywmA Bacillus pumilus SAFR-032 hypothetical protein YP_001488537.1 3305689 D 315750 CDS YP_001488538.1 157694076 5622620 complement(3306237..3306632) 1 NC_009848.1 proton (H+) translocating F-type ATPase (F-ATPase), F(1) epsilon subunit; H(+)-transporting two-sector ATPase, F(1) epsilon subunit 3306632 atpC 5622620 atpC Bacillus pumilus SAFR-032 H(+)-transporting two-sector ATPase, F(1) epsilon subunit YP_001488538.1 3306237 R 315750 CDS YP_001488539.1 157694077 5622621 complement(3306657..3308078) 1 NC_009848.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 3308078 atpD 5622621 atpD Bacillus pumilus SAFR-032 F0F1 ATP synthase subunit beta YP_001488539.1 3306657 R 315750 CDS YP_001488540.1 157694078 5622622 complement(3308103..3308969) 1 NC_009848.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 3308969 atpG 5622622 atpG Bacillus pumilus SAFR-032 F0F1 ATP synthase subunit gamma YP_001488540.1 3308103 R 315750 CDS YP_001488541.1 157694079 5622623 complement(3309058..3310566) 1 NC_009848.1 produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 3310566 atpA 5622623 atpA Bacillus pumilus SAFR-032 F0F1 ATP synthase subunit alpha YP_001488541.1 3309058 R 315750 CDS YP_001488542.1 157694080 5622624 complement(3310583..3311128) 1 NC_009848.1 Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 3311128 atpH 5622624 atpH Bacillus pumilus SAFR-032 F0F1 ATP synthase subunit delta YP_001488542.1 3310583 R 315750 CDS YP_001488543.1 157694081 5622625 complement(3311125..3311637) 1 NC_009848.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 3311637 atpF 5622625 atpF Bacillus pumilus SAFR-032 F0F1 ATP synthase subunit B YP_001488543.1 3311125 R 315750 CDS YP_001488544.1 157694082 5622626 complement(3311758..3311970) 1 NC_009848.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 3311970 atpE 5622626 atpE Bacillus pumilus SAFR-032 F0F1 ATP synthase subunit C YP_001488544.1 3311758 R 315750 CDS YP_001488545.1 157694083 5622627 complement(3312019..3312753) 1 NC_009848.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 3312753 atpB 5622627 atpB Bacillus pumilus SAFR-032 F0F1 ATP synthase subunit A YP_001488545.1 3312019 R 315750 CDS YP_001488546.1 157694084 5622628 complement(3312761..3313144) 1 NC_009848.1 proton (H+) translocating F-type ATPase (F-ATPase), F(0) subunit I; H(+)-transporting two-sector ATPase, F(0) subunit I 3313144 atpI 5622628 atpI Bacillus pumilus SAFR-032 H(+)-transporting two-sector ATPase, F(0) subunit I YP_001488546.1 3312761 R 315750 CDS YP_001488547.1 157694085 5622629 complement(3313641..3314270) 1 NC_009848.1 Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 3314270 upp 5622629 upp Bacillus pumilus SAFR-032 uracil phosphoribosyltransferase YP_001488547.1 3313641 R 315750 CDS YP_001488548.1 157694086 5622630 complement(3314418..3315665) 1 NC_009848.1 catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 3315665 glyA 5622630 glyA Bacillus pumilus SAFR-032 serine hydroxymethyltransferase YP_001488548.1 3314418 R 315750 CDS YP_001488549.1 157694087 5622631 complement(3315842..3316381) 1 NC_009848.1 hypothetical protein 3316381 ywlG 5622631 ywlG Bacillus pumilus SAFR-032 hypothetical protein YP_001488549.1 3315842 R 315750 CDS YP_001488550.1 157694088 5622632 complement(3316394..3316843) 1 NC_009848.1 catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B 3316843 ywlF 5622632 ywlF Bacillus pumilus SAFR-032 ribose-5-phosphate isomerase B YP_001488550.1 3316394 R 315750 CDS YP_001488551.1 157694089 5622633 complement(3316984..3317442) 1 NC_009848.1 protein-tyrosine-phosphatase YwlE 3317442 ywlE 5622633 ywlE Bacillus pumilus SAFR-032 protein-tyrosine-phosphatase YwlE YP_001488551.1 3316984 R 315750 CDS YP_001488552.1 157694090 5622634 complement(3317506..3318060) 1 NC_009848.1 hypothetical protein 3318060 ywlD 5622634 ywlD Bacillus pumilus SAFR-032 hypothetical protein YP_001488552.1 3317506 R 315750 CDS YP_001488553.1 157694091 5622635 complement(3318121..3319176) 1 NC_009848.1 possible translation protein YwlC; hypothetical protein 3319176 ywlC 5622635 ywlC Bacillus pumilus SAFR-032 hypothetical protein YP_001488553.1 3318121 R 315750 CDS YP_001488554.1 157694092 5622636 complement(3319335..3319778) 1 NC_009848.1 possible acyl-CoA N-acyltransferase; hypothetical protein 3319778 ywlB 5622636 ywlB Bacillus pumilus SAFR-032 hypothetical protein YP_001488554.1 3319335 R 315750 CDS YP_001488555.1 157694093 5622637 complement(3319842..3320498) 1 NC_009848.1 stage II sporulation protein R 3320498 spoIIR 5622637 spoIIR Bacillus pumilus SAFR-032 stage II sporulation protein R YP_001488555.1 3319842 R 315750 CDS YP_001488556.1 157694094 5622638 complement(3320618..3321097) 1 NC_009848.1 hypothetical protein 3321097 5622638 BPUM_3343 Bacillus pumilus SAFR-032 hypothetical protein YP_001488556.1 3320618 R 315750 CDS YP_001488557.1 157694095 5622639 complement(3321236..3322123) 1 NC_009848.1 YwkE; polypeptide chain release factor methyltransferase 3322123 hemK 5622639 hemK Bacillus pumilus SAFR-032 polypeptide chain release factor methyltransferase YP_001488557.1 3321236 R 315750 CDS YP_001488558.1 157694096 5622640 complement(3322113..3323180) 1 NC_009848.1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 3323180 prfA 5622640 prfA Bacillus pumilus SAFR-032 peptide chain release factor 1 YP_001488558.1 3322113 R 315750 CDS YP_001488559.1 157694097 5622641 3323391..3323939 1 NC_009848.1 remodeling and anchoring of the chromosome protein; in Bacillus subtilis this protein functions in polar chromosome segregation during sporulation; binds inverted sequence motifs called ram along the chromosome; condenses DNA via RacA-RacA interactions; polar chromosome segregation protein 3323939 racA 5622641 racA Bacillus pumilus SAFR-032 polar chromosome segregation protein YP_001488559.1 3323391 D 315750 CDS YP_001488560.1 157694098 5622642 complement(3323974..3324930) 1 NC_009848.1 malonate efflux carrier 3324930 ywkB 5622642 ywkB Bacillus pumilus SAFR-032 malonate efflux carrier YP_001488560.1 3323974 R 315750 CDS YP_001488561.1 157694099 5622643 complement(3325023..3326723) 1 NC_009848.1 malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 3326723 ywkA 5622643 ywkA Bacillus pumilus SAFR-032 malate dehydrogenase YP_001488561.1 3325023 R 315750 CDS YP_001488562.1 157694100 5622644 complement(3327003..3327605) 1 NC_009848.1 catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase 3327605 tdk 5622644 tdk Bacillus pumilus SAFR-032 thymidine kinase YP_001488562.1 3327003 R 315750 CDS YP_001488563.1 157694101 5622645 complement(3327693..3327893) 1 NC_009848.1 RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 3327893 rpmE 5622645 rpmE Bacillus pumilus SAFR-032 50S ribosomal protein L31 YP_001488563.1 3327693 R 315750 CDS YP_001488564.1 157694102 5622647 3329455..3329610 1 NC_009848.1 hypothetical protein 3329610 5622647 BPUM_3352 Bacillus pumilus SAFR-032 hypothetical protein YP_001488564.1 3329455 D 315750 CDS YP_001488565.1 157694103 5622648 complement(3329673..3330638) 1 NC_009848.1 type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 3330638 glpX 5622648 glpX Bacillus pumilus SAFR-032 fructose 1,6-bisphosphatase II YP_001488565.1 3329673 R 315750 CDS YP_001488566.1 157694104 5622649 complement(3330671..3331960) 1 NC_009848.1 adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3331960 murAB 5622649 murAB Bacillus pumilus SAFR-032 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_001488566.1 3330671 R 315750 CDS YP_001488567.1 157694105 5622650 complement(3332043..3332207) 1 NC_009848.1 hypothetical protein 3332207 5622650 BPUM_3355 Bacillus pumilus SAFR-032 hypothetical protein YP_001488567.1 3332043 R 315750 CDS YP_001488568.1 157694106 5622651 complement(3332208..3332846) 1 NC_009848.1 similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; putative translaldolase 3332846 ywjH 5622651 ywjH Bacillus pumilus SAFR-032 putative translaldolase YP_001488568.1 3332208 R 315750 CDS YP_001488569.1 157694107 5622652 complement(3332958..3333815) 1 NC_009848.1 catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; induced by anaerobic conditions in Bacillus subtilis; fructose-bisphosphate aldolase 3333815 fbaA 5622652 fbaA Bacillus pumilus SAFR-032 fructose-bisphosphate aldolase YP_001488569.1 3332958 R 315750 CDS YP_001488570.1 157694108 5622653 complement(3333994..3334368) 1 NC_009848.1 stage 0 sporulation initiation phosphotransferase F 3334368 spo0F 5622653 spo0F Bacillus pumilus SAFR-032 stage 0 sporulation initiation phosphotransferase F YP_001488570.1 3333994 R 315750 CDS YP_001488571.1 157694109 5622654 3334549..3335079 1 NC_009848.1 hypothetical protein 3335079 ywjG 5622654 ywjG Bacillus pumilus SAFR-032 hypothetical protein YP_001488571.1 3334549 D 315750 CDS YP_001488572.1 157694110 5622655 complement(3335122..3336729) 1 NC_009848.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 3336729 pyrG 5622655 pyrG Bacillus pumilus SAFR-032 CTP synthetase YP_001488572.1 3335122 R 315750 CDS YP_001488573.1 157694111 5622656 complement(3336968..3337507) 1 NC_009848.1 participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta 3337507 5622656 BPUM_3361 Bacillus pumilus SAFR-032 DNA-directed RNA polymerase subunit delta YP_001488573.1 3336968 R 315750 CDS YP_001488574.1 157694112 5622657 complement(3337947..3338450) 1 NC_009848.1 hypothetical protein 3338450 5622657 BPUM_3362 Bacillus pumilus SAFR-032 hypothetical protein YP_001488574.1 3337947 R 315750 CDS YP_001488575.1 157694113 5622658 complement(3338429..3339043) 1 NC_009848.1 lantibiotic immunity protein LanH; ABC transporter ATP-binding protein 3339043 lanH 5622658 lanH Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488575.1 3338429 R 315750 CDS YP_001488576.1 157694114 5622659 complement(3339074..3339604) 1 NC_009848.1 hypothetical protein 3339604 5622659 BPUM_3364 Bacillus pumilus SAFR-032 hypothetical protein YP_001488576.1 3339074 R 315750 CDS YP_001488577.1 157694115 5622660 complement(3339618..3340751) 1 NC_009848.1 hypothetical protein 3340751 5622660 BPUM_3365 Bacillus pumilus SAFR-032 hypothetical protein YP_001488577.1 3339618 R 315750 CDS YP_001488578.1 157694116 5622661 complement(3340760..3340936) 1 NC_009848.1 hypothetical protein 3340936 5622661 BPUM_3366 Bacillus pumilus SAFR-032 hypothetical protein YP_001488578.1 3340760 R 315750 CDS YP_001488579.1 157694117 5622662 complement(3341088..3341303) 1 NC_009848.1 hypothetical protein 3341303 5622662 BPUM_3367 Bacillus pumilus SAFR-032 hypothetical protein YP_001488579.1 3341088 R 315750 CDS YP_001488580.1 157694118 5622663 complement(3341601..3341756) 1 NC_009848.1 hypothetical protein 3341756 5622663 BPUM_3368 Bacillus pumilus SAFR-032 hypothetical protein YP_001488580.1 3341601 R 315750 CDS YP_001488581.1 157694119 5622664 complement(3342380..3342571) 1 NC_009848.1 hypothetical protein 3342571 5622664 BPUM_3369 Bacillus pumilus SAFR-032 hypothetical protein YP_001488581.1 3342380 R 315750 CDS YP_001488582.1 157694120 5622665 complement(3342879..3344021) 1 NC_009848.1 acyl-CoA dehydrogenase (NADP(+)) 3344021 5622665 BPUM_3370 Bacillus pumilus SAFR-032 acyl-CoA dehydrogenase (NADP(+)) YP_001488582.1 3342879 R 315750 CDS YP_001488583.1 157694121 5622666 complement(3344038..3345150) 1 NC_009848.1 acyl-CoA dehydrogenase (NADP(+)) 3345150 mmgC 5622666 mmgC Bacillus pumilus SAFR-032 acyl-CoA dehydrogenase (NADP(+)) YP_001488583.1 3344038 R 315750 CDS YP_001488584.1 157694122 5622667 complement(3345162..3346025) 1 NC_009848.1 3-hydroxybutyryl-CoA dehydrogenase 3346025 mmgB 5622667 mmgB Bacillus pumilus SAFR-032 3-hydroxybutyryl-CoA dehydrogenase YP_001488584.1 3345162 R 315750 CDS YP_001488585.1 157694123 5622668 complement(3346045..3347220) 1 NC_009848.1 acetyl-CoA C-acetyltransferase 3347220 mmgA 5622668 mmgA Bacillus pumilus SAFR-032 acetyl-CoA C-acetyltransferase YP_001488585.1 3346045 R 315750 CDS YP_001488586.1 157694124 5622669 complement(3347323..3349434) 1 NC_009848.1 Fe-S dehydrogenase 3349434 ywjF 5622669 ywjF Bacillus pumilus SAFR-032 Fe-S dehydrogenase YP_001488586.1 3347323 R 315750 CDS YP_001488587.1 157694125 5622670 3349578..3350774 1 NC_009848.1 phospholipase D 3350774 ywjE 5622670 ywjE Bacillus pumilus SAFR-032 phospholipase D YP_001488587.1 3349578 D 315750 CDS YP_001488588.1 157694126 5622671 3350787..3351749 1 NC_009848.1 YwjD; putative UV damage endonuclease 3351749 uvsE 5622671 uvsE Bacillus pumilus SAFR-032 putative UV damage endonuclease YP_001488588.1 3350787 D 315750 CDS YP_001488589.1 157694127 5622672 3351823..3352077 1 NC_009848.1 hypothetical protein 3352077 ywjC 5622672 ywjC Bacillus pumilus SAFR-032 hypothetical protein YP_001488589.1 3351823 D 315750 CDS YP_001488590.1 157694128 5622673 complement(3352104..3353102) 1 NC_009848.1 microcin immunity protein 3353102 5622673 BPUM_3378 Bacillus pumilus SAFR-032 microcin immunity protein YP_001488590.1 3352104 R 315750 CDS YP_001488591.1 157694129 5622674 complement(3353373..3355088) 1 NC_009848.1 ABC transporter ATP-binding protein 3355088 ywjA 5622674 ywjA Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488591.1 3353373 R 315750 CDS YP_001488592.1 157694130 5622675 complement(3355194..3356696) 1 NC_009848.1 cardiolipin synthetase 3356696 ywiE 5622675 ywiE Bacillus pumilus SAFR-032 cardiolipin synthetase YP_001488592.1 3355194 R 315750 CDS YP_001488593.1 157694131 5622676 3356853..3357824 1 NC_009848.1 possible microcin immunity protein; U61 family carboxypeptidase 3357824 5622676 BPUM_3381 Bacillus pumilus SAFR-032 U61 family carboxypeptidase YP_001488593.1 3356853 D 315750 CDS YP_001488594.1 157694132 5622677 3358215..3358493 1 NC_009848.1 hypothetical protein 3358493 yozM 5622677 yozM Bacillus pumilus SAFR-032 hypothetical protein YP_001488594.1 3358215 D 315750 CDS YP_001488595.1 157694133 5622678 complement(3358544..3360217) 1 NC_009848.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 3360217 argS 5622678 argS Bacillus pumilus SAFR-032 arginyl-tRNA synthetase YP_001488595.1 3358544 R 315750 CDS YP_001488596.1 157694134 5622679 complement(3360214..3360636) 1 NC_009848.1 hypothetical protein 3360636 ywiB 5622679 ywiB Bacillus pumilus SAFR-032 hypothetical protein YP_001488596.1 3360214 R 315750 CDS YP_001488597.1 157694135 5622680 complement(3360761..3361108) 1 NC_009848.1 hypothetical protein 3361108 5622680 BPUM_3385 Bacillus pumilus SAFR-032 hypothetical protein YP_001488597.1 3360761 R 315750 CDS YP_001488598.1 157694136 5622681 complement(3361185..3362057) 1 NC_009848.1 agmatinase 3362057 speB 5622681 speB Bacillus pumilus SAFR-032 agmatinase YP_001488598.1 3361185 R 315750 CDS YP_001488599.1 157694137 5622682 complement(3362127..3362957) 1 NC_009848.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 3362957 speE 5622682 speE Bacillus pumilus SAFR-032 spermidine synthase YP_001488599.1 3362127 R 315750 CDS YP_001488600.1 157694138 5622683 3363182..3365251 1 NC_009848.1 penicillin-binding protein 3365251 ywhE 5622683 ywhE Bacillus pumilus SAFR-032 penicillin-binding protein YP_001488600.1 3363182 D 315750 CDS YP_001488601.1 157694139 5622684 complement(3365385..3365903) 1 NC_009848.1 hypothetical protein 3365903 ywhD 5622684 ywhD Bacillus pumilus SAFR-032 hypothetical protein YP_001488601.1 3365385 R 315750 CDS YP_001488602.1 157694140 5622685 complement(3365916..3366578) 1 NC_009848.1 M50 family membrane metalloprotease 3366578 ywhC 5622685 ywhC Bacillus pumilus SAFR-032 M50 family membrane metalloprotease YP_001488602.1 3365916 R 315750 CDS YP_001488603.1 157694141 5622686 3366686..3366871 1 NC_009848.1 4-oxalocrotonate tautomerase 3366871 ywhB 5622686 ywhB Bacillus pumilus SAFR-032 4-oxalocrotonate tautomerase YP_001488603.1 3366686 D 315750 CDS YP_001488604.1 157694142 5622687 complement(3366921..3367733) 1 NC_009848.1 hypothetical protein 3367733 5622687 BPUM_3392 Bacillus pumilus SAFR-032 hypothetical protein YP_001488604.1 3366921 R 315750 CDS YP_001488605.1 157694143 5622688 complement(3367959..3368459) 1 NC_009848.1 hypothetical protein 3368459 ywgA 5622688 ywgA Bacillus pumilus SAFR-032 hypothetical protein YP_001488605.1 3367959 R 315750 CDS YP_001488606.1 157694144 5622689 complement(3368490..3369791) 1 NC_009848.1 HD superfamily phosphohydrolase 3369791 ywfO 5622689 ywfO Bacillus pumilus SAFR-032 HD superfamily phosphohydrolase YP_001488606.1 3368490 R 315750 CDS YP_001488607.1 157694145 5622690 complement(3369962..3370249) 1 NC_009848.1 hypothetical protein 3370249 ywzC 5622690 ywzC Bacillus pumilus SAFR-032 hypothetical protein YP_001488607.1 3369962 R 315750 CDS YP_001488608.1 157694146 5622691 3370422..3371222 1 NC_009848.1 prespore-specific transcriptional regulator; transcriptional regulator 3371222 rsfA 5622691 rsfA Bacillus pumilus SAFR-032 transcriptional regulator YP_001488608.1 3370422 D 315750 CDS YP_001488609.1 157694147 5622692 complement(3371257..3371490) 1 NC_009848.1 hypothetical protein 3371490 5622692 BPUM_3397 Bacillus pumilus SAFR-032 hypothetical protein YP_001488609.1 3371257 R 315750 CDS YP_001488610.1 157694148 5622693 complement(3371487..3373763) 1 NC_009848.1 glycosyltransferase 3373763 5622693 BPUM_3398 Bacillus pumilus SAFR-032 glycosyltransferase YP_001488610.1 3371487 R 315750 CDS YP_001488611.1 157694149 5622694 complement(3373883..3374416) 1 NC_009848.1 hypothetical protein 3374416 5622694 BPUM_3399 Bacillus pumilus SAFR-032 hypothetical protein YP_001488611.1 3373883 R 315750 CDS YP_001488612.1 157694150 5622695 complement(3374397..3375242) 1 NC_009848.1 YwfL; lipoate--protein ligase 3375242 5622695 BPUM_3400 Bacillus pumilus SAFR-032 lipoate--protein ligase YP_001488612.1 3374397 R 315750 CDS YP_001488613.1 157694151 5622696 complement(3375399..3375785) 1 NC_009848.1 hypothetical protein 3375785 5622696 BPUM_3401 Bacillus pumilus SAFR-032 hypothetical protein YP_001488613.1 3375399 R 315750 CDS YP_001488614.1 157694152 5622697 complement(3376046..3376363) 1 NC_009848.1 hypothetical protein 3376363 5622697 BPUM_3402 Bacillus pumilus SAFR-032 hypothetical protein YP_001488614.1 3376046 R 315750 CDS YP_001488615.1 157694153 5622698 complement(3376385..3376660) 1 NC_009848.1 hypothetical protein 3376660 5622698 BPUM_3403 Bacillus pumilus SAFR-032 hypothetical protein YP_001488615.1 3376385 R 315750 CDS YP_001488616.1 157694154 5622699 complement(3376641..3376826) 1 NC_009848.1 hypothetical protein 3376826 5622699 BPUM_3404 Bacillus pumilus SAFR-032 hypothetical protein YP_001488616.1 3376641 R 315750 CDS YP_001488617.1 157694155 5622700 complement(3377115..3377510) 1 NC_009848.1 hypothetical protein 3377510 5622700 BPUM_3405 Bacillus pumilus SAFR-032 hypothetical protein YP_001488617.1 3377115 R 315750 CDS YP_001488618.1 157694156 5622701 complement(3377799..3378125) 1 NC_009848.1 hypothetical protein 3378125 5622701 BPUM_3406 Bacillus pumilus SAFR-032 hypothetical protein YP_001488618.1 3377799 R 315750 CDS YP_001488619.1 157694157 5622702 complement(3378141..3379664) 1 NC_009848.1 transposase 3379664 5622702 BPUM_3407 Bacillus pumilus SAFR-032 transposase YP_001488619.1 3378141 R 315750 CDS YP_001488620.1 157694158 5622703 complement(3379676..3379954) 1 NC_009848.1 hypothetical protein 3379954 5622703 BPUM_3408 Bacillus pumilus SAFR-032 hypothetical protein YP_001488620.1 3379676 R 315750 CDS YP_001488621.1 157694159 5622705 complement(3380532..3380798) 1 NC_009848.1 hypothetical protein 3380798 5622705 BPUM_3410 Bacillus pumilus SAFR-032 hypothetical protein YP_001488621.1 3380532 R 315750 CDS YP_001488622.1 157694160 5622706 complement(3380812..3382146) 1 NC_009848.1 TRAP-T family tripartite ATP-independent periplasmic membrane protein 3382146 5622706 BPUM_3411 Bacillus pumilus SAFR-032 TRAP-T family tripartite ATP-independent periplasmic membrane protein YP_001488622.1 3380812 R 315750 CDS YP_001488623.1 157694161 5622707 complement(3382188..3383063) 1 NC_009848.1 3-hydroxyisobutyrate dehydrogenase 3383063 5622707 BPUM_3412 Bacillus pumilus SAFR-032 3-hydroxyisobutyrate dehydrogenase YP_001488623.1 3382188 R 315750 CDS YP_001488624.1 157694162 5622708 complement(3383076..3383747) 1 NC_009848.1 dimethylmenaquinone methyltransferase 3383747 5622708 BPUM_3413 Bacillus pumilus SAFR-032 dimethylmenaquinone methyltransferase YP_001488624.1 3383076 R 315750 CDS YP_001488625.1 157694163 5622709 complement(3383892..3384743) 1 NC_009848.1 transcriptional regulator 3384743 5622709 BPUM_3414 Bacillus pumilus SAFR-032 transcriptional regulator YP_001488625.1 3383892 R 315750 CDS YP_001488626.1 157694164 5622710 complement(3384859..3385830) 1 NC_009848.1 in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase 3385830 eutD 5622710 eutD Bacillus pumilus SAFR-032 phosphotransacetylase YP_001488626.1 3384859 R 315750 CDS YP_001488627.1 157694165 5622711 3386071..3386841 1 NC_009848.1 putative heme peroxidase 3386841 ywfI 5622711 ywfI Bacillus pumilus SAFR-032 putative heme peroxidase YP_001488627.1 3386071 D 315750 CDS YP_001488628.1 157694166 5622712 3386908..3388068 1 NC_009848.1 major facilitator superfamily transporter 3388068 5622712 BPUM_3417 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001488628.1 3386908 D 315750 CDS YP_001488629.1 157694167 5622713 complement(3388082..3388627) 1 NC_009848.1 Lrp/Asn family transcriptional regulator 3388627 5622713 BPUM_3418 Bacillus pumilus SAFR-032 Lrp/Asn family transcriptional regulator YP_001488629.1 3388082 R 315750 CDS YP_001488630.1 157694168 5622714 3388707..3389939 1 NC_009848.1 major facilitator superfamily transporter 3389939 ywfA 5622714 ywfA Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001488630.1 3388707 D 315750 CDS YP_001488631.1 157694169 5622715 3390089..3390691 1 NC_009848.1 ywfB; bacilysin biosynthesis protein BacA 3390691 bacA 5622715 bacA Bacillus pumilus SAFR-032 bacilysin biosynthesis protein BacA YP_001488631.1 3390089 D 315750 CDS YP_001488632.1 157694170 5622716 3390693..3391400 1 NC_009848.1 ywfC; bacilysin biosynthesis protein BacB 3391400 bacB 5622716 bacB Bacillus pumilus SAFR-032 bacilysin biosynthesis protein BacB YP_001488632.1 3390693 D 315750 CDS YP_001488633.1 157694171 5622717 3391397..3392158 1 NC_009848.1 oxidoreductase YwfD; bacilysin biosynthesis protein BacC 3392158 bacC 5622717 bacC Bacillus pumilus SAFR-032 bacilysin biosynthesis protein BacC YP_001488633.1 3391397 D 315750 CDS YP_001488634.1 157694172 5622718 3392174..3393595 1 NC_009848.1 alanine-anticapsin ligase YwfE; bacilysin biosynthesis protein BacD 3393595 bacD 5622718 bacD Bacillus pumilus SAFR-032 bacilysin biosynthesis protein BacD YP_001488634.1 3392174 D 315750 CDS YP_001488635.1 157694173 5622719 3393611..3394807 1 NC_009848.1 produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however; transaminase 3394807 ywfG 5622719 ywfG Bacillus pumilus SAFR-032 transaminase YP_001488635.1 3393611 D 315750 CDS YP_001488636.1 157694174 5622720 complement(3394822..3395658) 1 NC_009848.1 short chain dehydrogenase 3395658 ywfH 5622720 ywfH Bacillus pumilus SAFR-032 short chain dehydrogenase YP_001488636.1 3394822 R 315750 CDS YP_001488637.1 157694175 5622721 complement(3395715..3396170) 1 NC_009848.1 dTDP-4-dehydrorhamnose 3,5-epimerase RfbC; spore coat polysaccharide biosynthesis protein SpsL 3396170 spsL 5622721 spsL Bacillus pumilus SAFR-032 spore coat polysaccharide biosynthesis protein SpsL YP_001488637.1 3395715 R 315750 CDS YP_001488638.1 157694176 5622722 complement(3396163..3397017) 1 NC_009848.1 dTDP-4-dehydrorhamnose reductase RfbD; spore coat polysaccharide biosynthesis protein SpsK 3397017 spsK 5622722 spsK Bacillus pumilus SAFR-032 spore coat polysaccharide biosynthesis protein SpsK YP_001488638.1 3396163 R 315750 CDS YP_001488639.1 157694177 5622723 complement(3397021..3397986) 1 NC_009848.1 dTDP-D-glucose 4,6-dehydratase RfbB; spore coat polysaccharide biosynthesis protein SpsJ 3397986 spsJ 5622723 spsJ Bacillus pumilus SAFR-032 spore coat polysaccharide biosynthesis protein SpsJ YP_001488639.1 3397021 R 315750 CDS YP_001488640.1 157694178 5622724 complement(3397983..3398723) 1 NC_009848.1 spore coat polysaccharide biosynthesis protein SpsI 3398723 spsI 5622724 spsI Bacillus pumilus SAFR-032 spore coat polysaccharide biosynthesis protein SpsI YP_001488640.1 3397983 R 315750 CDS YP_001488641.1 157694179 5622725 complement(3398726..3399754) 1 NC_009848.1 spore coat polysaccharide biosynthesis protein SpsG 3399754 spsG 5622725 spsG Bacillus pumilus SAFR-032 spore coat polysaccharide biosynthesis protein SpsG YP_001488641.1 3398726 R 315750 CDS YP_001488642.1 157694180 5622726 complement(3399751..3400491) 1 NC_009848.1 spore coat polysaccharide biosynthesis protein SpsF 3400491 spsF 5622726 spsF Bacillus pumilus SAFR-032 spore coat polysaccharide biosynthesis protein SpsF YP_001488642.1 3399751 R 315750 CDS YP_001488643.1 157694181 5622727 complement(3400481..3401605) 1 NC_009848.1 sialic acid synthase; spore coat polysaccharide biosynthesis protein SpsE 3401605 spsE 5622727 spsE Bacillus pumilus SAFR-032 spore coat polysaccharide biosynthesis protein SpsE YP_001488643.1 3400481 R 315750 CDS YP_001488644.1 157694182 5622728 complement(3401607..3402482) 1 NC_009848.1 spore coat polysaccharide biosynthesis protein SpsD 3402482 spsD 5622728 spsD Bacillus pumilus SAFR-032 spore coat polysaccharide biosynthesis protein SpsD YP_001488644.1 3401607 R 315750 CDS YP_001488645.1 157694183 5622729 complement(3402479..3403657) 1 NC_009848.1 spore coat polysaccharide biosynthesis protein SpsC 3403657 spsC 5622729 spsC Bacillus pumilus SAFR-032 spore coat polysaccharide biosynthesis protein SpsC YP_001488645.1 3402479 R 315750 CDS YP_001488646.1 157694184 5622730 complement(3403679..3405091) 1 NC_009848.1 spore coat polysaccharide biosynthesis protein SpsB 3405091 spsB 5622730 spsB Bacillus pumilus SAFR-032 spore coat polysaccharide biosynthesis protein SpsB YP_001488646.1 3403679 R 315750 CDS YP_001488647.1 157694185 5622731 complement(3405098..3405877) 1 NC_009848.1 spore coat polysaccharide biosynthesis protein SpsA 3405877 spsA 5622731 spsA Bacillus pumilus SAFR-032 spore coat polysaccharide biosynthesis protein SpsA YP_001488647.1 3405098 R 315750 CDS YP_001488648.1 157694186 5622732 3406044..3406718 1 NC_009848.1 hypothetical protein 3406718 5622732 BPUM_3437 Bacillus pumilus SAFR-032 hypothetical protein YP_001488648.1 3406044 D 315750 CDS YP_001488649.1 157694187 5622733 3406942..3407484 1 NC_009848.1 YwdL; spore coat protein GerQ 3407484 gerQ 5622733 gerQ Bacillus pumilus SAFR-032 spore coat protein GerQ YP_001488649.1 3406942 D 315750 CDS YP_001488650.1 157694188 5622734 3407614..3408231 1 NC_009848.1 possible cupin family protein; hypothetical protein 3408231 5622734 BPUM_3439 Bacillus pumilus SAFR-032 hypothetical protein YP_001488650.1 3407614 D 315750 CDS YP_001488651.1 157694189 5622735 complement(3408272..3408643) 1 NC_009848.1 hypothetical protein 3408643 ywdK 5622735 ywdK Bacillus pumilus SAFR-032 hypothetical protein YP_001488651.1 3408272 R 315750 CDS YP_001488652.1 157694190 5622736 complement(3408714..3410021) 1 NC_009848.1 NCS2 family nucleobase:cation symporter-2 3410021 ywdJ 5622736 ywdJ Bacillus pumilus SAFR-032 NCS2 family nucleobase:cation symporter-2 YP_001488652.1 3408714 R 315750 CDS YP_001488653.1 157694191 5622737 complement(3410055..3410387) 1 NC_009848.1 hypothetical protein 3410387 ywdI 5622737 ywdI Bacillus pumilus SAFR-032 hypothetical protein YP_001488653.1 3410055 R 315750 CDS YP_001488654.1 157694192 5622739 complement(3411951..3412631) 1 NC_009848.1 Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase 3412631 ung 5622739 ung Bacillus pumilus SAFR-032 uracil-DNA glycosylase YP_001488654.1 3411951 R 315750 CDS YP_001488655.1 157694193 5622740 complement(3412628..3413455) 1 NC_009848.1 glycosyltransferase 3413455 ywdF 5622740 ywdF Bacillus pumilus SAFR-032 glycosyltransferase YP_001488655.1 3412628 R 315750 CDS YP_001488656.1 157694194 5622741 3413584..3413763 1 NC_009848.1 hypothetical protein 3413763 5622741 BPUM_3446 Bacillus pumilus SAFR-032 hypothetical protein YP_001488656.1 3413584 D 315750 CDS YP_001488657.1 157694195 5622742 3413760..3413924 1 NC_009848.1 hypothetical protein 3413924 5622742 BPUM_3447 Bacillus pumilus SAFR-032 hypothetical protein YP_001488657.1 3413760 D 315750 CDS YP_001488658.1 157694196 5622743 3414051..3414860 1 NC_009848.1 catalyzes the phosphorylation of three vitamin B6 precursors, pyridoxal, pyridoxine and pyridoxamine; pyridoxal kinase 3414860 thiD 5622743 thiD Bacillus pumilus SAFR-032 pyridoxal kinase YP_001488658.1 3414051 D 315750 CDS YP_001488659.1 157694197 5622744 complement(3414906..3415982) 1 NC_009848.1 peptidase 3415982 5622744 BPUM_3449 Bacillus pumilus SAFR-032 peptidase YP_001488659.1 3414906 R 315750 CDS YP_001488660.1 157694198 5622745 complement(3416131..3416469) 1 NC_009848.1 hypothetical protein 3416469 ywdA 5622745 ywdA Bacillus pumilus SAFR-032 hypothetical protein YP_001488660.1 3416131 R 315750 CDS YP_001488661.1 157694199 5622746 complement(3416575..3418044) 1 NC_009848.1 sucrose-6-phosphate hydrolase O-Glycosyl hydrolase; beta-fructofuranosidase 3418044 sacA 5622746 sacA Bacillus pumilus SAFR-032 beta-fructofuranosidase YP_001488661.1 3416575 R 315750 CDS YP_001488662.1 157694200 5622747 complement(3418052..3419440) 1 NC_009848.1 protein-N(pi)-phosphohistidine--sugar phosphotransferase; PTS family sucrose (suc) porter component IIBC 3419440 sacP 5622747 sacP Bacillus pumilus SAFR-032 PTS family sucrose (suc) porter component IIBC YP_001488662.1 3418052 R 315750 CDS YP_001488663.1 157694201 5622748 complement(3419695..3420528) 1 NC_009848.1 possible PTS family fructose/mannitol (fru) porter component II; transcriptional antiterminator 3420528 sacT 5622748 sacT Bacillus pumilus SAFR-032 transcriptional antiterminator YP_001488663.1 3419695 R 315750 CDS YP_001488664.1 157694202 5622749 complement(3420581..3420859) 1 NC_009848.1 hypothetical protein 3420859 5622749 BPUM_3454 Bacillus pumilus SAFR-032 hypothetical protein YP_001488664.1 3420581 R 315750 CDS YP_001488665.1 157694203 5622750 3421360..3423786 1 NC_009848.1 subtilisin-like extracellular serine protease AprE; endopeptidase 3423786 vpr 5622750 vpr Bacillus pumilus SAFR-032 endopeptidase YP_001488665.1 3421360 D 315750 CDS YP_001488666.1 157694204 5622751 complement(3423774..3423941) 1 NC_009848.1 hypothetical protein 3423941 5622751 BPUM_3456 Bacillus pumilus SAFR-032 hypothetical protein YP_001488666.1 3423774 R 315750 CDS YP_001488667.1 157694205 5622752 complement(3424111..3425112) 1 NC_009848.1 flavin utilizing monoxygenase 3425112 ywcH 5622752 ywcH Bacillus pumilus SAFR-032 flavin utilizing monoxygenase YP_001488667.1 3424111 R 315750 CDS YP_001488668.1 157694206 5622753 complement(3425168..3425917) 1 NC_009848.1 FMN-containing NADPH-linked nitro/flavin reductase; flavin reductase 3425917 nfrA 5622753 nfrA Bacillus pumilus SAFR-032 flavin reductase YP_001488668.1 3425168 R 315750 CDS YP_001488669.1 157694207 5622754 complement(3426028..3427239) 1 NC_009848.1 YwcF; cell wall protein 3427239 rodA 5622754 rodA Bacillus pumilus SAFR-032 cell wall protein YP_001488669.1 3426028 R 315750 CDS YP_001488670.1 157694208 5622755 3427716..3427982 1 NC_009848.1 spore morphogenesis and germination protein YwcE 3427982 ywcE 5622755 ywcE Bacillus pumilus SAFR-032 spore morphogenesis and germination protein YwcE YP_001488670.1 3427716 D 315750 CDS YP_001488671.1 157694209 5622756 complement(3428061..3428441) 1 NC_009848.1 cytochrome aa3 quinol oxidase subunit IV 3428441 qoxD 5622756 qoxD Bacillus pumilus SAFR-032 cytochrome aa3 quinol oxidase subunit IV YP_001488671.1 3428061 R 315750 CDS YP_001488672.1 157694210 5622757 complement(3428443..3429060) 1 NC_009848.1 cytochrome aa3 quinol oxidase subunit III 3429060 qoxC 5622757 qoxC Bacillus pumilus SAFR-032 cytochrome aa3 quinol oxidase subunit III YP_001488672.1 3428443 R 315750 CDS YP_001488673.1 157694211 5622758 complement(3429060..3431018) 1 NC_009848.1 cytochrome aa3 quinol oxidase subunit I 3431018 qoxB 5622758 qoxB Bacillus pumilus SAFR-032 cytochrome aa3 quinol oxidase subunit I YP_001488673.1 3429060 R 315750 CDS YP_001488674.1 157694212 5622759 complement(3431046..3432005) 1 NC_009848.1 cytochrome aa3 quinol oxidase subunit II 3432005 qoxA 5622759 qoxA Bacillus pumilus SAFR-032 cytochrome aa3 quinol oxidase subunit II YP_001488674.1 3431046 R 315750 CDS YP_001488675.1 157694213 5622760 complement(3432519..3433601) 1 NC_009848.1 M24 family peptidase-like protein 3433601 5622760 BPUM_3465 Bacillus pumilus SAFR-032 M24 family peptidase-like protein YP_001488675.1 3432519 R 315750 CDS YP_001488676.1 157694214 5622761 complement(3433606..3435126) 1 NC_009848.1 catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase 3435126 galT 5622761 galT Bacillus pumilus SAFR-032 galactose-1-phosphate uridylyltransferase YP_001488676.1 3433606 R 315750 CDS YP_001488677.1 157694215 5622762 complement(3435161..3436153) 1 NC_009848.1 cell envelope biogenesis protein; UDP-glucose 4-epimerase 3436153 galE1 5622762 galE1 Bacillus pumilus SAFR-032 UDP-glucose 4-epimerase YP_001488677.1 3435161 R 315750 CDS YP_001488678.1 157694216 5622763 complement(3436153..3437337) 1 NC_009848.1 catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 3437337 galK 5622763 galK Bacillus pumilus SAFR-032 galactokinase YP_001488678.1 3436153 R 315750 CDS YP_001488679.1 157694217 5622764 3437514..3438359 1 NC_009848.1 possible arabinose operon control protein; AraC family transcription regulator 3438359 yesS 5622764 yesS Bacillus pumilus SAFR-032 AraC family transcription regulator YP_001488679.1 3437514 D 315750 CDS YP_001488680.1 157694218 5622765 complement(3438395..3438652) 1 NC_009848.1 hypothetical protein 3438652 5622765 BPUM_3470 Bacillus pumilus SAFR-032 hypothetical protein YP_001488680.1 3438395 R 315750 CDS YP_001488681.1 157694219 5622766 complement(3438680..3439063) 1 NC_009848.1 GtrA family integral membrane protein 3439063 ywcD 5622766 ywcD Bacillus pumilus SAFR-032 GtrA family integral membrane protein YP_001488681.1 3438680 R 315750 CDS YP_001488682.1 157694220 5622767 3439959..3440648 1 NC_009848.1 O-antigen biosynthesis protein 3440648 5622767 BPUM_3472 Bacillus pumilus SAFR-032 O-antigen biosynthesis protein YP_001488682.1 3439959 D 315750 CDS YP_001488683.1 157694221 5622768 3440641..3441309 1 NC_009848.1 StrF; streptomycin biosynthesis protein 3441309 5622768 BPUM_3473 Bacillus pumilus SAFR-032 streptomycin biosynthesis protein YP_001488683.1 3440641 D 315750 CDS YP_001488684.1 157694222 5622769 complement(3441589..3441834) 1 NC_009848.1 hypothetical protein 3441834 5622769 BPUM_3474 Bacillus pumilus SAFR-032 hypothetical protein YP_001488684.1 3441589 R 315750 CDS YP_001488685.1 157694223 5622770 complement(3441824..3442951) 1 NC_009848.1 aspartate phosphatase response regulator Rap40 YqcH; aspartate phosphatase response regulator 3442951 rapE 5622770 rapE Bacillus pumilus SAFR-032 aspartate phosphatase response regulator YP_001488685.1 3441824 R 315750 CDS YP_001488686.1 157694224 5622771 complement(3443413..3443658) 1 NC_009848.1 hypothetical protein 3443658 5622771 BPUM_3476 Bacillus pumilus SAFR-032 hypothetical protein YP_001488686.1 3443413 R 315750 CDS YP_001488687.1 157694225 5622772 3443692..3444360 1 NC_009848.1 hypothetical protein 3444360 5622772 BPUM_3477 Bacillus pumilus SAFR-032 hypothetical protein YP_001488687.1 3443692 D 315750 CDS YP_001488688.1 157694226 5622773 3444786..3445100 1 NC_009848.1 hypothetical protein 3445100 ywcB 5622773 ywcB Bacillus pumilus SAFR-032 hypothetical protein YP_001488688.1 3444786 D 315750 CDS YP_001488689.1 157694227 5622774 3445097..3446638 1 NC_009848.1 SSS family solute/sodium (Na+) symporter 3446638 ywcA 5622774 ywcA Bacillus pumilus SAFR-032 SSS family solute/sodium (Na+) symporter YP_001488689.1 3445097 D 315750 CDS YP_001488690.1 157694228 5622775 complement(3446633..3446788) 1 NC_009848.1 hypothetical protein 3446788 5622775 BPUM_3480 Bacillus pumilus SAFR-032 hypothetical protein YP_001488690.1 3446633 R 315750 CDS YP_001488691.1 157694229 5622776 3447130..3447468 1 NC_009848.1 hypothetical protein 3447468 5622776 BPUM_3481 Bacillus pumilus SAFR-032 hypothetical protein YP_001488691.1 3447130 D 315750 CDS YP_001488692.1 157694230 5622777 complement(3447494..3447868) 1 NC_009848.1 hypothetical protein 3447868 5622777 BPUM_3482 Bacillus pumilus SAFR-032 hypothetical protein YP_001488692.1 3447494 R 315750 CDS YP_001488693.1 157694231 5622778 complement(3448003..3448671) 1 NC_009848.1 Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase 3448671 thiE 5622778 thiE Bacillus pumilus SAFR-032 thiamine-phosphate pyrophosphorylase YP_001488693.1 3448003 R 315750 CDS YP_001488694.1 157694232 5622779 complement(3448668..3449483) 1 NC_009848.1 catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase 3449483 thiM 5622779 thiM Bacillus pumilus SAFR-032 hydroxyethylthiazole kinase YP_001488694.1 3448668 R 315750 CDS YP_001488695.1 157694233 5622780 complement(3449501..3450388) 1 NC_009848.1 transcriptional regulator 3450388 ywbI 5622780 ywbI Bacillus pumilus SAFR-032 transcriptional regulator YP_001488695.1 3449501 R 315750 CDS YP_001488696.1 157694234 5622781 3450554..3450937 1 NC_009848.1 increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation; inhibited by the antiholin-like proteins lrgAB; holin-like protein 3450937 lrgA 5622781 lrgA Bacillus pumilus SAFR-032 holin-like protein YP_001488696.1 3450554 D 315750 CDS YP_001488697.1 157694235 5622782 3450931..3451611 1 NC_009848.1 possible peptidoglycan hydrolase; murein hydrolase LrgB 3451611 lrgB 5622782 lrgB Bacillus pumilus SAFR-032 murein hydrolase LrgB YP_001488697.1 3450931 D 315750 CDS YP_001488698.1 157694236 5622783 complement(3451649..3452830) 1 NC_009848.1 S-adenosylmethionine (SAM)-dependent methyltransferase 3452830 ywbD 5622783 ywbD Bacillus pumilus SAFR-032 S-adenosylmethionine (SAM)-dependent methyltransferase YP_001488698.1 3451649 R 315750 CDS YP_001488699.1 157694237 5622784 3452948..3453331 1 NC_009848.1 glyoxalase 3453331 ywbC 5622784 ywbC Bacillus pumilus SAFR-032 glyoxalase YP_001488699.1 3452948 D 315750 CDS YP_001488700.1 157694238 5622785 complement(3453411..3454139) 1 NC_009848.1 glutamine ABC transporter ATP-binding protein 3454139 5622785 BPUM_3490 Bacillus pumilus SAFR-032 glutamine ABC transporter ATP-binding protein YP_001488700.1 3453411 R 315750 CDS YP_001488701.1 157694239 5622787 complement(3455774..3455947) 1 NC_009848.1 hypothetical protein 3455947 5622787 BPUM_3493 Bacillus pumilus SAFR-032 hypothetical protein YP_001488701.1 3455774 R 315750 CDS YP_001488702.1 157694240 5622788 3456142..3457227 1 NC_009848.1 aspartate phosphatase response regulator 3457227 rapD2 5622788 rapD2 Bacillus pumilus SAFR-032 aspartate phosphatase response regulator YP_001488702.1 3456142 D 315750 CDS YP_001488703.1 157694241 5622789 complement(3457436..3458068) 1 NC_009848.1 hypothetical protein 3458068 ywaC 5622789 ywaC Bacillus pumilus SAFR-032 hypothetical protein YP_001488703.1 3457436 R 315750 CDS YP_001488704.1 157694242 5622790 complement(3458163..3459176) 1 NC_009848.1 possible AraH ABC superfamily ATP binding cassette transporter, membrane protein; sugar ABC transporter ATP-binding protein 3459176 5622790 BPUM_3496 Bacillus pumilus SAFR-032 sugar ABC transporter ATP-binding protein YP_001488704.1 3458163 R 315750 CDS YP_001488705.1 157694243 5622791 complement(3459173..3460669) 1 NC_009848.1 sugar ABC transporter ATP-binding protein 3460669 5622791 BPUM_3497 Bacillus pumilus SAFR-032 sugar ABC transporter ATP-binding protein YP_001488705.1 3459173 R 315750 CDS YP_001488706.1 157694244 5622792 complement(3460739..3461857) 1 NC_009848.1 sugar ABC transporter ATP-binding protein 3461857 5622792 BPUM_3498 Bacillus pumilus SAFR-032 sugar ABC transporter ATP-binding protein YP_001488706.1 3460739 R 315750 CDS YP_001488707.1 157694245 5622793 complement(3462252..3463679) 1 NC_009848.1 YwoF; hypothetical protein 3463679 5622793 BPUM_3499 Bacillus pumilus SAFR-032 hypothetical protein YP_001488707.1 3462252 R 315750 CDS YP_001488708.1 157694246 5622794 3464046..3465137 1 NC_009848.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 3465137 ywaA 5622794 ywaA Bacillus pumilus SAFR-032 branched-chain amino acid aminotransferase YP_001488708.1 3464046 D 315750 CDS YP_001488709.1 157694247 5622795 3465242..3465430 1 NC_009848.1 hypothetical protein 3465430 5622795 BPUM_3501 Bacillus pumilus SAFR-032 hypothetical protein YP_001488709.1 3465242 D 315750 CDS YP_001488710.1 157694248 5622796 complement(3465456..3465908) 1 NC_009848.1 hypothetical protein 3465908 5622796 BPUM_3502 Bacillus pumilus SAFR-032 hypothetical protein YP_001488710.1 3465456 R 315750 CDS YP_001488711.1 157694249 5622797 complement(3465973..3467301) 1 NC_009848.1 6-phospho-beta-glucosidase 3467301 licH2 5622797 licH2 Bacillus pumilus SAFR-032 6-phospho-beta-glucosidase YP_001488711.1 3465973 R 315750 CDS YP_001488712.1 157694250 5622798 complement(3467298..3467624) 1 NC_009848.1 protein-N(pi)-phosphohistidine--sugar phosphotransferase; PTS family oligomeric beta-glucoside porter component IIA 3467624 licA 5622798 licA Bacillus pumilus SAFR-032 PTS family oligomeric beta-glucoside porter component IIA YP_001488712.1 3467298 R 315750 CDS YP_001488713.1 157694251 5622799 complement(3467651..3469000) 1 NC_009848.1 PTS family oligomeric beta-glucoside porter component IIC 3469000 licC 5622799 licC Bacillus pumilus SAFR-032 PTS family oligomeric beta-glucoside porter component IIC YP_001488713.1 3467651 R 315750 CDS YP_001488714.1 157694252 5622800 complement(3469015..3469320) 1 NC_009848.1 protein-N(pi)-phosphohistidine--sugar phosphotransferase; PTS family oligomeric beta-glucoside porter component IIB 3469320 licB 5622800 licB Bacillus pumilus SAFR-032 PTS family oligomeric beta-glucoside porter component IIB YP_001488714.1 3469015 R 315750 CDS YP_001488715.1 157694253 5622801 complement(3469440..3471386) 1 NC_009848.1 transcription antiterminator BglG 3471386 5622801 BPUM_3507 Bacillus pumilus SAFR-032 transcription antiterminator BglG YP_001488715.1 3469440 R 315750 CDS YP_001488716.1 157694254 5622802 complement(3471624..3472238) 1 NC_009848.1 C60 family sortase A 3472238 5622802 BPUM_3508 Bacillus pumilus SAFR-032 C60 family sortase A YP_001488716.1 3471624 R 315750 CDS YP_001488717.1 157694255 5622803 complement(3472308..3473690) 1 NC_009848.1 hypothetical protein 3473690 5622803 BPUM_3509 Bacillus pumilus SAFR-032 hypothetical protein YP_001488717.1 3472308 R 315750 CDS YP_001488718.1 157694256 5622804 complement(3473816..3473929) 1 NC_009848.1 hypothetical protein 3473929 yxzF 5622804 yxzF Bacillus pumilus SAFR-032 hypothetical protein YP_001488718.1 3473816 R 315750 CDS YP_001488719.1 157694257 5622805 complement(3474013..3475383) 1 NC_009848.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 3475383 gdhA 5622805 gdhA Bacillus pumilus SAFR-032 glutamate dehydrogenase YP_001488719.1 3474013 R 315750 CDS YP_001488720.1 157694258 5622806 complement(3475698..3475910) 1 NC_009848.1 hypothetical protein 3475910 yxlD 5622806 yxlD Bacillus pumilus SAFR-032 hypothetical protein YP_001488720.1 3475698 R 315750 CDS YP_001488721.1 157694259 5622807 complement(3475907..3476218) 1 NC_009848.1 hypothetical protein 3476218 yxlC 5622807 yxlC Bacillus pumilus SAFR-032 hypothetical protein YP_001488721.1 3475907 R 315750 CDS YP_001488722.1 157694260 5622808 complement(3476218..3476748) 1 NC_009848.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor SigY 3476748 sigY 5622808 sigY Bacillus pumilus SAFR-032 RNA polymerase sigma factor SigY YP_001488722.1 3476218 R 315750 CDS YP_001488723.1 157694261 5622809 3477232..3478260 1 NC_009848.1 pectate lyase 3478260 pelB 5622809 pelB Bacillus pumilus SAFR-032 pectate lyase YP_001488723.1 3477232 D 315750 CDS YP_001488724.1 157694262 5622810 complement(3478318..3480051) 1 NC_009848.1 ABC transporter ATP-binding protein 3480051 cydD 5622810 cydD Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488724.1 3478318 R 315750 CDS YP_001488725.1 157694263 5622811 complement(3480041..3481777) 1 NC_009848.1 ABC transporter ATP-binding protein 3481777 cydC 5622811 cydC Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488725.1 3480041 R 315750 CDS YP_001488726.1 157694264 5622812 complement(3481777..3482793) 1 NC_009848.1 cytochrome bd ubiquinol oxidase subunit II 3482793 cydB 5622812 cydB Bacillus pumilus SAFR-032 cytochrome bd ubiquinol oxidase subunit II YP_001488726.1 3481777 R 315750 CDS YP_001488727.1 157694265 5622813 complement(3482780..3484195) 1 NC_009848.1 cytochrome bd ubiquinol oxidase subunit I 3484195 cydA 5622813 cydA Bacillus pumilus SAFR-032 cytochrome bd ubiquinol oxidase subunit I YP_001488727.1 3482780 R 315750 CDS YP_001488728.1 157694266 5622814 complement(3484527..3485648) 1 NC_009848.1 iron ABC transporter ATP-binding protein 3485648 5622814 BPUM_3520 Bacillus pumilus SAFR-032 iron ABC transporter ATP-binding protein YP_001488728.1 3484527 R 315750 CDS YP_001488729.1 157694267 5622815 complement(3485650..3486663) 1 NC_009848.1 iron ABC transporter membrane protein 3486663 5622815 BPUM_3521 Bacillus pumilus SAFR-032 iron ABC transporter membrane protein YP_001488729.1 3485650 R 315750 CDS YP_001488730.1 157694268 5622816 complement(3486660..3487598) 1 NC_009848.1 iron ABC transporter binding protein 3487598 5622816 BPUM_3522 Bacillus pumilus SAFR-032 iron ABC transporter binding protein YP_001488730.1 3486660 R 315750 CDS YP_001488731.1 157694269 5622817 complement(3487617..3488369) 1 NC_009848.1 C60 family sortase B 3488369 5622817 BPUM_3523 Bacillus pumilus SAFR-032 C60 family sortase B YP_001488731.1 3487617 R 315750 CDS YP_001488732.1 157694270 5622818 complement(3488396..3489166) 1 NC_009848.1 iron ABC transporter ATP-binding protein 3489166 5622818 BPUM_3524 Bacillus pumilus SAFR-032 iron ABC transporter ATP-binding protein YP_001488732.1 3488396 R 315750 CDS YP_001488733.1 157694271 5622819 complement(3489153..3490139) 1 NC_009848.1 iron ABC transporter membrane protein 3490139 5622819 BPUM_3525 Bacillus pumilus SAFR-032 iron ABC transporter membrane protein YP_001488733.1 3489153 R 315750 CDS YP_001488734.1 157694272 5622820 complement(3490173..3491060) 1 NC_009848.1 iron ABC transporter binding protein 3491060 5622820 BPUM_3526 Bacillus pumilus SAFR-032 iron ABC transporter binding protein YP_001488734.1 3490173 R 315750 CDS YP_001488735.1 157694273 5622823 complement(3494480..3494812) 1 NC_009848.1 hypothetical protein 3494812 5622823 BPUM_3529 Bacillus pumilus SAFR-032 hypothetical protein YP_001488735.1 3494480 R 315750 CDS YP_001488736.1 157694274 5622824 3494988..3495881 1 NC_009848.1 glyoxalase family protein 3495881 5622824 BPUM_3530 Bacillus pumilus SAFR-032 glyoxalase family protein YP_001488736.1 3494988 D 315750 CDS YP_001488737.1 157694275 5622825 3495859..3496620 1 NC_009848.1 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II 3496620 ribAB 5622825 ribAB Bacillus pumilus SAFR-032 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II YP_001488737.1 3495859 D 315750 CDS YP_001488738.1 157694276 5622826 3496607..3497698 1 NC_009848.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 3497698 ribD1 5622826 ribD1 Bacillus pumilus SAFR-032 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase YP_001488738.1 3496607 D 315750 CDS YP_001488739.1 157694277 5622828 3498161..3498316 1 NC_009848.1 hypothetical protein 3498316 5622828 BPUM_3534 Bacillus pumilus SAFR-032 hypothetical protein YP_001488739.1 3498161 D 315750 CDS YP_001488740.1 157694278 5622829 complement(3498932..3499792) 1 NC_009848.1 polysaccharide deacetylase 3499792 yxkH 5622829 yxkH Bacillus pumilus SAFR-032 polysaccharide deacetylase YP_001488740.1 3498932 R 315750 CDS YP_001488741.1 157694279 5622830 complement(3499858..3500202) 1 NC_009848.1 PTS system cellobiose transporter subunit IIA 3500202 ptcA 5622830 ptcA Bacillus pumilus SAFR-032 PTS system cellobiose transporter subunit IIA YP_001488741.1 3499858 R 315750 CDS YP_001488742.1 157694280 5622831 complement(3500207..3500530) 1 NC_009848.1 PTS family cellobiose porter component IIB 3500530 5622831 BPUM_3537 Bacillus pumilus SAFR-032 PTS family cellobiose porter component IIB YP_001488742.1 3500207 R 315750 CDS YP_001488743.1 157694281 5622832 complement(3500543..3501976) 1 NC_009848.1 YdhP; beta-glucosidase 3501976 5622832 BPUM_3538 Bacillus pumilus SAFR-032 beta-glucosidase YP_001488743.1 3500543 R 315750 CDS YP_001488744.1 157694282 5622834 complement(3502546..3503856) 1 NC_009848.1 PTS system transporter subunit IIC 3503856 5622834 BPUM_3540 Bacillus pumilus SAFR-032 PTS system transporter subunit IIC YP_001488744.1 3502546 R 315750 CDS YP_001488745.1 157694283 5622835 complement(3503946..3505904) 1 NC_009848.1 possible LicABCH operon regulator CelR; transcriptional regulator 3505904 5622835 BPUM_3541 Bacillus pumilus SAFR-032 transcriptional regulator YP_001488745.1 3503946 R 315750 CDS YP_001488746.1 157694284 5622836 3506011..3506256 1 NC_009848.1 hypothetical protein 3506256 5622836 BPUM_3542 Bacillus pumilus SAFR-032 hypothetical protein YP_001488746.1 3506011 D 315750 CDS YP_001488747.1 157694285 5622837 complement(3506301..3506726) 1 NC_009848.1 hypothetical protein 3506726 5622837 BPUM_3543 Bacillus pumilus SAFR-032 hypothetical protein YP_001488747.1 3506301 R 315750 CDS YP_001488748.1 157694286 5622838 complement(3507009..3507272) 1 NC_009848.1 hypothetical protein 3507272 ywqIA 5622838 ywqIA Bacillus pumilus SAFR-032 hypothetical protein YP_001488748.1 3507009 R 315750 CDS YP_001488749.1 157694287 5622839 complement(3507310..3507735) 1 NC_009848.1 hypothetical protein 3507735 5622839 BPUM_3545 Bacillus pumilus SAFR-032 hypothetical protein YP_001488749.1 3507310 R 315750 CDS YP_001488750.1 157694288 5622840 complement(3508034..3509443) 1 NC_009848.1 NhaC family H(+)/lactate-Na(+) antiporter 3509443 mleN 5622840 mleN Bacillus pumilus SAFR-032 NhaC family H(+)/lactate-Na(+) antiporter YP_001488750.1 3508034 R 315750 CDS YP_001488751.1 157694289 5622841 complement(3509587..3511008) 1 NC_009848.1 catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase 3511008 ansB2 5622841 ansB2 Bacillus pumilus SAFR-032 aspartate ammonia-lyase YP_001488751.1 3509587 R 315750 CDS YP_001488752.1 157694290 5622842 complement(3511037..3512026) 1 NC_009848.1 asparaginase 3512026 ansA 5622842 ansA Bacillus pumilus SAFR-032 asparaginase YP_001488752.1 3511037 R 315750 CDS YP_001488753.1 157694291 5622843 3512234..3512581 1 NC_009848.1 ans operon repressor protein; transcriptional regulator 3512581 ansR 5622843 ansR Bacillus pumilus SAFR-032 transcriptional regulator YP_001488753.1 3512234 D 315750 CDS YP_001488754.1 157694292 5622844 complement(3512635..3513102) 1 NC_009848.1 helix-turn-helix domain protein; DNA-binding protein 3513102 5622844 BPUM_3550 Bacillus pumilus SAFR-032 DNA-binding protein YP_001488754.1 3512635 R 315750 CDS YP_001488755.1 157694293 5622845 complement(3513201..3513728) 1 NC_009848.1 hypothetical protein 3513728 yfjD 5622845 yfjD Bacillus pumilus SAFR-032 hypothetical protein YP_001488755.1 3513201 R 315750 CDS YP_001488756.1 157694294 5622846 complement(3513750..3514508) 1 NC_009848.1 hypothetical protein 3514508 yfjC 5622846 yfjC Bacillus pumilus SAFR-032 hypothetical protein YP_001488756.1 3513750 R 315750 CDS YP_001488757.1 157694295 5622847 complement(3514521..3515717) 1 NC_009848.1 hypothetical protein 3515717 yfjB 5622847 yfjB Bacillus pumilus SAFR-032 hypothetical protein YP_001488757.1 3514521 R 315750 CDS YP_001488758.1 157694296 5622848 complement(3515722..3516054) 1 NC_009848.1 hypothetical protein 3516054 yfjA 5622848 yfjA Bacillus pumilus SAFR-032 hypothetical protein YP_001488758.1 3515722 R 315750 CDS YP_001488759.1 157694297 5622849 3516272..3517504 1 NC_009848.1 catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 3517504 pepT 5622849 pepT Bacillus pumilus SAFR-032 peptidase T YP_001488759.1 3516272 D 315750 CDS YP_001488760.1 157694298 5622850 3517778..3517972 1 NC_009848.1 hypothetical protein 3517972 5622850 BPUM_3556 Bacillus pumilus SAFR-032 hypothetical protein YP_001488760.1 3517778 D 315750 CDS YP_001488761.1 157694299 5622851 complement(3518057..3518749) 1 NC_009848.1 hypothetical protein 3518749 5622851 BPUM_3557 Bacillus pumilus SAFR-032 hypothetical protein YP_001488761.1 3518057 R 315750 CDS YP_001488762.1 157694300 5622852 3518896..3519756 1 NC_009848.1 transcriptional regulator 3519756 5622852 BPUM_3558 Bacillus pumilus SAFR-032 transcriptional regulator YP_001488762.1 3518896 D 315750 CDS YP_001488763.1 157694301 5622853 3519955..3520848 1 NC_009848.1 catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase 3520848 garR 5622853 garR Bacillus pumilus SAFR-032 tartronate semialdehyde reductase YP_001488763.1 3519955 D 315750 CDS YP_001488764.1 157694302 5622854 3520850..3522277 1 NC_009848.1 hypothetical protein 3522277 5622854 BPUM_3560 Bacillus pumilus SAFR-032 hypothetical protein YP_001488764.1 3520850 D 315750 CDS YP_001488765.1 157694303 5622855 3522329..3523648 1 NC_009848.1 GntP family gluconate:proton (H+) symporter 3523648 5622855 BPUM_3561 Bacillus pumilus SAFR-032 GntP family gluconate:proton (H+) symporter YP_001488765.1 3522329 D 315750 CDS YP_001488766.1 157694304 5622856 3523929..3525050 1 NC_009848.1 YxjG; hypothetical protein 3525050 5622856 BPUM_3562 Bacillus pumilus SAFR-032 hypothetical protein YP_001488766.1 3523929 D 315750 CDS YP_001488767.1 157694305 5622857 complement(3525317..3526432) 1 NC_009848.1 hypothetical protein 3526432 5622857 BPUM_3563 Bacillus pumilus SAFR-032 hypothetical protein YP_001488767.1 3525317 R 315750 CDS YP_001488768.1 157694306 5622858 complement(3526429..3527082) 1 NC_009848.1 ABC transporter ATP-binding protein 3527082 mglA 5622858 mglA Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488768.1 3526429 R 315750 CDS YP_001488769.1 157694307 5622859 complement(3527444..3528880) 1 NC_009848.1 beta-glucosidase 3528880 bglH 5622859 bglH Bacillus pumilus SAFR-032 beta-glucosidase YP_001488769.1 3527444 R 315750 CDS YP_001488770.1 157694308 5622860 complement(3528834..3530741) 1 NC_009848.1 PTS family glucose/glucoside (glc) porter component IIABC 3530741 5622860 BPUM_3566 Bacillus pumilus SAFR-032 PTS family glucose/glucoside (glc) porter component IIABC YP_001488770.1 3528834 R 315750 CDS YP_001488771.1 157694309 5622861 complement(3531069..3531902) 1 NC_009848.1 transcription antiterminator 3531902 licT1 5622861 licT1 Bacillus pumilus SAFR-032 transcription antiterminator YP_001488771.1 3531069 R 315750 CDS YP_001488772.1 157694310 5622862 3532189..3533544 1 NC_009848.1 transposase 3533544 5622862 BPUM_3568 Bacillus pumilus SAFR-032 transposase YP_001488772.1 3532189 D 315750 CDS YP_001488773.1 157694311 5622863 complement(3533664..3534479) 1 NC_009848.1 hypothetical protein 3534479 ywqG 5622863 ywqG Bacillus pumilus SAFR-032 hypothetical protein YP_001488773.1 3533664 R 315750 CDS YP_001488774.1 157694312 5622864 complement(3534653..3535492) 1 NC_009848.1 chemotaxis sensory transducer protein 3535492 5622864 BPUM_3570 Bacillus pumilus SAFR-032 chemotaxis sensory transducer protein YP_001488774.1 3534653 R 315750 CDS YP_001488775.1 157694313 5622865 complement(3535645..3536379) 1 NC_009848.1 cobalt ABC transporter 3536379 ykoC 5622865 ykoC Bacillus pumilus SAFR-032 cobalt ABC transporter YP_001488775.1 3535645 R 315750 CDS YP_001488776.1 157694314 5622866 complement(3536369..3537967) 1 NC_009848.1 ABC transporter ATP-binding protein 3537967 5622866 BPUM_3572 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488776.1 3536369 R 315750 CDS YP_001488777.1 157694315 5622867 complement(3537942..3538541) 1 NC_009848.1 ABC transporter ATP-binding protein 3538541 ykoE 5622867 ykoE Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488777.1 3537942 R 315750 CDS YP_001488778.1 157694316 5622868 complement(3538538..3539224) 1 NC_009848.1 thiaminase 3539224 5622868 BPUM_3574 Bacillus pumilus SAFR-032 thiaminase YP_001488778.1 3538538 R 315750 CDS YP_001488779.1 157694317 5622869 complement(3539472..3540599) 1 NC_009848.1 hypothetical protein 3540599 5622869 BPUM_3575 Bacillus pumilus SAFR-032 hypothetical protein YP_001488779.1 3539472 R 315750 CDS YP_001488780.1 157694318 5622870 complement(3540741..3541397) 1 NC_009848.1 C56 family peptidase 3541397 yraA 5622870 yraA Bacillus pumilus SAFR-032 C56 family peptidase YP_001488780.1 3540741 R 315750 CDS YP_001488781.1 157694319 5622871 3541652..3541816 1 NC_009848.1 hypothetical protein 3541816 5622871 BPUM_3577 Bacillus pumilus SAFR-032 hypothetical protein YP_001488781.1 3541652 D 315750 CDS YP_001488782.1 157694320 5622872 complement(3541851..3542222) 1 NC_009848.1 hypothetical protein 3542222 5622872 BPUM_3578 Bacillus pumilus SAFR-032 hypothetical protein YP_001488782.1 3541851 R 315750 CDS YP_001488783.1 157694321 5622873 complement(3542228..3542482) 1 NC_009848.1 hypothetical protein 3542482 5622873 BPUM_3579 Bacillus pumilus SAFR-032 hypothetical protein YP_001488783.1 3542228 R 315750 CDS YP_001488784.1 157694322 5622874 complement(3542690..3545071) 1 NC_009848.1 M6 family metalloendopeptidase 3545071 5622874 BPUM_3580 Bacillus pumilus SAFR-032 M6 family metalloendopeptidase YP_001488784.1 3542690 R 315750 CDS YP_001488785.1 157694323 5622875 complement(3545261..3545554) 1 NC_009848.1 possible antibiotic biosynthesis monooxygenase; hypothetical protein 3545554 ycnE 5622875 ycnE Bacillus pumilus SAFR-032 hypothetical protein YP_001488785.1 3545261 R 315750 CDS YP_001488786.1 157694324 5622876 complement(3545580..3546218) 1 NC_009848.1 NAD(P)H nitroreductase 3546218 ydgI 5622876 ydgI Bacillus pumilus SAFR-032 NAD(P)H nitroreductase YP_001488786.1 3545580 R 315750 CDS YP_001488787.1 157694325 5622877 complement(3546233..3546676) 1 NC_009848.1 MarR family transcriptional regulator 3546676 ydgJ 5622877 ydgJ Bacillus pumilus SAFR-032 MarR family transcriptional regulator YP_001488787.1 3546233 R 315750 CDS YP_001488788.1 157694326 5622878 3546704..3546859 1 NC_009848.1 hypothetical protein 3546859 5622878 BPUM_3584 Bacillus pumilus SAFR-032 hypothetical protein YP_001488788.1 3546704 D 315750 CDS YP_001488789.1 157694327 5622879 complement(3546884..3548185) 1 NC_009848.1 Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway; pyrimidine-nucleoside phosphorylase 3548185 pdp 5622879 pdp Bacillus pumilus SAFR-032 pyrimidine-nucleoside phosphorylase YP_001488789.1 3546884 R 315750 CDS YP_001488790.1 157694328 5622880 complement(3548211..3549392) 1 NC_009848.1 CNT family concentrative nucleoside transporter 3549392 nupC 5622880 nupC Bacillus pumilus SAFR-032 CNT family concentrative nucleoside transporter YP_001488790.1 3548211 R 315750 CDS YP_001488791.1 157694329 5622881 complement(3549559..3550230) 1 NC_009848.1 Dra; deoxyribose-phosphate aldolase 3550230 deoC 5622881 deoC Bacillus pumilus SAFR-032 deoxyribose-phosphate aldolase YP_001488791.1 3549559 R 315750 CDS YP_001488792.1 157694330 5622882 complement(3550314..3551258) 1 NC_009848.1 YxxC; DeoR family transcriptional regulator 3551258 deoR 5622882 deoR Bacillus pumilus SAFR-032 DeoR family transcriptional regulator YP_001488792.1 3550314 R 315750 CDS YP_001488793.1 157694331 5622883 complement(3551319..3552329) 1 NC_009848.1 aldose 1-epimerase 3552329 5622883 BPUM_3589 Bacillus pumilus SAFR-032 aldose 1-epimerase YP_001488793.1 3551319 R 315750 CDS YP_001488794.1 157694332 5622884 3552436..3554259 1 NC_009848.1 acyltransferase 3554259 yrhL 5622884 yrhL Bacillus pumilus SAFR-032 acyltransferase YP_001488794.1 3552436 D 315750 CDS YP_001488795.1 157694333 5622885 complement(3554398..3555669) 1 NC_009848.1 major facilitator superfamily transporter 3555669 ydeG 5622885 ydeG Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001488795.1 3554398 R 315750 CDS YP_001488796.1 157694334 5622886 complement(3555914..3557011) 1 NC_009848.1 hypothetical protein 3557011 5622886 BPUM_3592 Bacillus pumilus SAFR-032 hypothetical protein YP_001488796.1 3555914 R 315750 CDS YP_001488797.1 157694335 5622887 complement(3557008..3557715) 1 NC_009848.1 possible UbiE family methyltransferase; SAM-dependent methyltransferase 3557715 5622887 BPUM_3593 Bacillus pumilus SAFR-032 SAM-dependent methyltransferase YP_001488797.1 3557008 R 315750 CDS YP_001488798.1 157694336 5622888 3557845..3558852 1 NC_009848.1 LuxR family transcriptional regulator 3558852 5622888 BPUM_3594 Bacillus pumilus SAFR-032 LuxR family transcriptional regulator YP_001488798.1 3557845 D 315750 CDS YP_001488799.1 157694337 5622889 complement(3559094..3559906) 1 NC_009848.1 possible HAD superfamily hydrolase; HAD family hydrolase 3559906 yxeH 5622889 yxeH Bacillus pumilus SAFR-032 HAD family hydrolase YP_001488799.1 3559094 R 315750 CDS YP_001488800.1 157694338 5622890 3560216..3560575 1 NC_009848.1 transcriptional regulator 3560575 yyaN 5622890 yyaN Bacillus pumilus SAFR-032 transcriptional regulator YP_001488800.1 3560216 D 315750 CDS YP_001488801.1 157694339 5622891 3560685..3561701 1 NC_009848.1 YulF; dehydrogenase 3561701 5622891 BPUM_3597 Bacillus pumilus SAFR-032 dehydrogenase YP_001488801.1 3560685 D 315750 CDS YP_001488802.1 157694340 5622892 complement(3561744..3563258) 1 NC_009848.1 sensor histidine kinase 3563258 5622892 BPUM_3598 Bacillus pumilus SAFR-032 sensor histidine kinase YP_001488802.1 3561744 R 315750 CDS YP_001488803.1 157694341 5622893 3563578..3564915 1 NC_009848.1 amino acid APC transporter 3564915 5622893 BPUM_3599 Bacillus pumilus SAFR-032 amino acid APC transporter YP_001488803.1 3563578 D 315750 CDS YP_001488804.1 157694342 5622894 complement(3564949..3566055) 1 NC_009848.1 DNA alkylation repair protein 3566055 yhaZ 5622894 yhaZ Bacillus pumilus SAFR-032 DNA alkylation repair protein YP_001488804.1 3564949 R 315750 CDS YP_001488805.1 157694343 5622895 complement(3566146..3567474) 1 NC_009848.1 GntP family gluconate:proton (H+) symporter 3567474 5622895 BPUM_3601 Bacillus pumilus SAFR-032 GntP family gluconate:proton (H+) symporter YP_001488805.1 3566146 R 315750 CDS YP_001488806.1 157694344 5622896 complement(3567499..3569043) 1 NC_009848.1 gluconokinase 3569043 gntK 5622896 gntK Bacillus pumilus SAFR-032 gluconokinase YP_001488806.1 3567499 R 315750 CDS YP_001488807.1 157694345 5622897 complement(3569228..3570085) 1 NC_009848.1 transcriptional regulator 3570085 ybbH 5622897 ybbH Bacillus pumilus SAFR-032 transcriptional regulator YP_001488807.1 3569228 R 315750 CDS YP_001488808.1 157694346 5622898 complement(3570177..3571112) 1 NC_009848.1 purine nucleosidase 3571112 5622898 BPUM_3604 Bacillus pumilus SAFR-032 purine nucleosidase YP_001488808.1 3570177 R 315750 CDS YP_001488809.1 157694347 5622899 complement(3571207..3571689) 1 NC_009848.1 hypothetical protein 3571689 5622899 BPUM_3605 Bacillus pumilus SAFR-032 hypothetical protein YP_001488809.1 3571207 R 315750 CDS YP_001488810.1 157694348 5622900 complement(3571772..3572254) 1 NC_009848.1 hypothetical protein 3572254 5622900 BPUM_3606 Bacillus pumilus SAFR-032 hypothetical protein YP_001488810.1 3571772 R 315750 CDS YP_001488811.1 157694349 5622901 complement(3572338..3572835) 1 NC_009848.1 hypothetical protein 3572835 5622901 BPUM_3607 Bacillus pumilus SAFR-032 hypothetical protein YP_001488811.1 3572338 R 315750 CDS YP_001488812.1 157694350 5622902 3572960..3574450 1 NC_009848.1 hypothetical protein 3574450 5622902 BPUM_3608 Bacillus pumilus SAFR-032 hypothetical protein YP_001488812.1 3572960 D 315750 CDS YP_001488813.1 157694351 5622903 3574463..3574873 1 NC_009848.1 hypothetical protein 3574873 5622903 BPUM_3609 Bacillus pumilus SAFR-032 hypothetical protein YP_001488813.1 3574463 D 315750 CDS YP_001488814.1 157694352 5622904 3574956..3576632 1 NC_009848.1 hypothetical protein 3576632 5622904 BPUM_3610 Bacillus pumilus SAFR-032 hypothetical protein YP_001488814.1 3574956 D 315750 CDS YP_001488815.1 157694353 5622905 complement(3576648..3577547) 1 NC_009848.1 LysR family transcriptional regulator 3577547 ywfK 5622905 ywfK Bacillus pumilus SAFR-032 LysR family transcriptional regulator YP_001488815.1 3576648 R 315750 CDS YP_001488816.1 157694354 5622906 3577720..3578715 1 NC_009848.1 LacI family transcriptional regulator LacR 3578715 lacR 5622906 lacR Bacillus pumilus SAFR-032 LacI family transcriptional regulator LacR YP_001488816.1 3577720 D 315750 CDS YP_001488817.1 157694355 5622907 3578886..3580151 1 NC_009848.1 YvfK; cyclodextrin ABC transporter binding protein 3580151 cycB 5622907 cycB Bacillus pumilus SAFR-032 cyclodextrin ABC transporter binding protein YP_001488817.1 3578886 D 315750 CDS YP_001488818.1 157694356 5622908 3580290..3581528 1 NC_009848.1 cyclodextrin ABC transporter membrane protein 3581528 yvfL 5622908 yvfL Bacillus pumilus SAFR-032 cyclodextrin ABC transporter membrane protein YP_001488818.1 3580290 D 315750 CDS YP_001488819.1 157694357 5622909 3581530..3582372 1 NC_009848.1 cyclodextrin ABC transporter membrane protein 3582372 yvfM 5622909 yvfM Bacillus pumilus SAFR-032 cyclodextrin ABC transporter membrane protein YP_001488819.1 3581530 D 315750 CDS YP_001488820.1 157694358 5622910 3582384..3583592 1 NC_009848.1 arabinogalactan endo-1,4-beta-galactosidase 3583592 yvfO 5622910 yvfO Bacillus pumilus SAFR-032 arabinogalactan endo-1,4-beta-galactosidase YP_001488820.1 3582384 D 315750 CDS YP_001488821.1 157694359 5622911 3583616..3585682 1 NC_009848.1 beta-galactosidase 3585682 lacA 5622911 lacA Bacillus pumilus SAFR-032 beta-galactosidase YP_001488821.1 3583616 D 315750 CDS YP_001488822.1 157694360 5622912 3585981..3587309 1 NC_009848.1 CitMHS family citrate-divalent cation:proton (H+) symporter 3587309 5622912 BPUM_3618 Bacillus pumilus SAFR-032 CitMHS family citrate-divalent cation:proton (H+) symporter YP_001488822.1 3585981 D 315750 CDS YP_001488823.1 157694361 5622913 complement(3587351..3587779) 1 NC_009848.1 hypothetical protein 3587779 5622913 BPUM_3619 Bacillus pumilus SAFR-032 hypothetical protein YP_001488823.1 3587351 R 315750 CDS YP_001488824.1 157694362 5622914 complement(3587807..3588760) 1 NC_009848.1 ABC transporter ATP-binding protein 3588760 yhcI 5622914 yhcI Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488824.1 3587807 R 315750 CDS YP_001488825.1 157694363 5622915 complement(3588757..3589686) 1 NC_009848.1 spore transporter YhcH; ABC transporter ATP-binding protein 3589686 yhcH 5622915 yhcH Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488825.1 3588757 R 315750 CDS YP_001488826.1 157694364 5622916 complement(3589877..3590797) 1 NC_009848.1 ABC transporter ATP-binding protein 3590797 5622916 BPUM_3622 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488826.1 3589877 R 315750 CDS YP_001488827.1 157694365 5622917 complement(3590800..3591693) 1 NC_009848.1 ABC transporter ATP-binding protein 3591693 5622917 BPUM_3623 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488827.1 3590800 R 315750 CDS YP_001488828.1 157694366 5622918 complement(3591686..3592036) 1 NC_009848.1 response regulator 3592036 5622918 BPUM_3624 Bacillus pumilus SAFR-032 response regulator YP_001488828.1 3591686 R 315750 CDS YP_001488829.1 157694367 5622919 complement(3592046..3592567) 1 NC_009848.1 hypothetical protein 3592567 5622919 BPUM_3625 Bacillus pumilus SAFR-032 hypothetical protein YP_001488829.1 3592046 R 315750 CDS YP_001488830.1 157694368 5622920 complement(3592570..3593094) 1 NC_009848.1 hypothetical protein 3593094 5622920 BPUM_3626 Bacillus pumilus SAFR-032 hypothetical protein YP_001488830.1 3592570 R 315750 CDS YP_001488831.1 157694369 5622921 complement(3593113..3593334) 1 NC_009848.1 hypothetical protein 3593334 5622921 BPUM_3627 Bacillus pumilus SAFR-032 hypothetical protein YP_001488831.1 3593113 R 315750 CDS YP_001488832.1 157694370 5622922 3593574..3593858 1 NC_009848.1 hypothetical protein 3593858 5622922 BPUM_3628 Bacillus pumilus SAFR-032 hypothetical protein YP_001488832.1 3593574 D 315750 CDS YP_001488833.1 157694371 5622923 complement(3594054..3594392) 1 NC_009848.1 alkylphosphonate uptake protein 3594392 phnA 5622923 phnA Bacillus pumilus SAFR-032 alkylphosphonate uptake protein YP_001488833.1 3594054 R 315750 CDS YP_001488834.1 157694372 5622924 complement(3594485..3595624) 1 NC_009848.1 YxaA; glycerate kinase 3595624 glxK 5622924 glxK Bacillus pumilus SAFR-032 glycerate kinase YP_001488834.1 3594485 R 315750 CDS YP_001488835.1 157694373 5622925 complement(3595656..3596942) 1 NC_009848.1 GntP family gluconate:proton (H+) symporter 3596942 yojA 5622925 yojA Bacillus pumilus SAFR-032 GntP family gluconate:proton (H+) symporter YP_001488835.1 3595656 R 315750 CDS YP_001488836.1 157694374 5622926 complement(3597045..3598157) 1 NC_009848.1 possible transcriptional regulator CdaR; sugar diacid utilization regulator 3598157 ysfB 5622926 ysfB Bacillus pumilus SAFR-032 sugar diacid utilization regulator YP_001488836.1 3597045 R 315750 CDS YP_001488837.1 157694375 5622927 3598319..3598969 1 NC_009848.1 AcrR family transcriptional regulator; TetR family transcriptional regulator 3598969 ydgC 5622927 ydgC Bacillus pumilus SAFR-032 TetR family transcriptional regulator YP_001488837.1 3598319 D 315750 CDS YP_001488838.1 157694376 5622928 3599030..3600292 1 NC_009848.1 major facilitator superfamily macrolide:cation symporter (or antiporter or uniporter) 3600292 5622928 BPUM_3634 Bacillus pumilus SAFR-032 major facilitator superfamily macrolide:cation symporter (or antiporter or uniporter) YP_001488838.1 3599030 D 315750 CDS YP_001488839.1 157694377 5622929 3600289..3602616 1 NC_009848.1 ABC transporter ATP-binding protein 3602616 5622929 BPUM_3635 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488839.1 3600289 D 315750 CDS YP_001488840.1 157694378 5622930 3602621..3603391 1 NC_009848.1 ABC transporter ATP-binding protein 3603391 5622930 BPUM_3636 Bacillus pumilus SAFR-032 ABC transporter ATP-binding protein YP_001488840.1 3602621 D 315750 CDS YP_001488841.1 157694379 5622931 complement(3603423..3603635) 1 NC_009848.1 hypothetical protein 3603635 5622931 BPUM_3637 Bacillus pumilus SAFR-032 hypothetical protein YP_001488841.1 3603423 R 315750 CDS YP_001488842.1 157694380 5622932 3604335..3604529 1 NC_009848.1 hypothetical protein 3604529 5622932 BPUM_3638 Bacillus pumilus SAFR-032 hypothetical protein YP_001488842.1 3604335 D 315750 CDS YP_001488843.1 157694381 5622933 3604540..3605283 1 NC_009848.1 hypothetical protein 3605283 5622933 BPUM_3639 Bacillus pumilus SAFR-032 hypothetical protein YP_001488843.1 3604540 D 315750 CDS YP_001488844.1 157694382 5622934 complement(3605471..3605659) 1 NC_009848.1 hypothetical protein 3605659 5622934 BPUM_3640 Bacillus pumilus SAFR-032 hypothetical protein YP_001488844.1 3605471 R 315750 CDS YP_001488845.1 157694383 5622935 3606160..3607338 1 NC_009848.1 aspartate phosphatase response regulator K 3607338 rapK 5622935 rapK Bacillus pumilus SAFR-032 aspartate phosphatase response regulator K YP_001488845.1 3606160 D 315750 CDS YP_001488846.1 157694384 5622936 complement(3607438..3608286) 1 NC_009848.1 transcription antiterminator 3608286 licT2 5622936 licT2 Bacillus pumilus SAFR-032 transcription antiterminator YP_001488846.1 3607438 R 315750 CDS YP_001488847.1 157694385 5622937 complement(3608317..3609783) 1 NC_009848.1 beta-glucosidase 3609783 5622937 BPUM_3643 Bacillus pumilus SAFR-032 beta-glucosidase YP_001488847.1 3608317 R 315750 CDS YP_001488848.1 157694386 5622938 complement(3609788..3611647) 1 NC_009848.1 protein-N(pi)-phosphohistidine--sugar phosphotransferase SytA; PTS family beta-glucoside (glc) porter component IIBCA 3611647 5622938 BPUM_3644 Bacillus pumilus SAFR-032 PTS family beta-glucoside (glc) porter component IIBCA YP_001488848.1 3609788 R 315750 CDS YP_001488849.1 157694387 5622939 complement(3611995..3612960) 1 NC_009848.1 hypothetical protein 3612960 5622939 BPUM_3645 Bacillus pumilus SAFR-032 hypothetical protein YP_001488849.1 3611995 R 315750 CDS YP_001488850.1 157694388 5622940 complement(3612989..3613882) 1 NC_009848.1 hypothetical protein 3613882 5622940 BPUM_3646 Bacillus pumilus SAFR-032 hypothetical protein YP_001488850.1 3612989 R 315750 CDS YP_001488851.1 157694389 5622941 3614062..3614613 1 NC_009848.1 transcriptional regulator 3614613 5622941 BPUM_3647 Bacillus pumilus SAFR-032 transcriptional regulator YP_001488851.1 3614062 D 315750 CDS YP_001488852.1 157694390 5622942 3614618..3615100 1 NC_009848.1 hypothetical protein 3615100 5622942 BPUM_3648 Bacillus pumilus SAFR-032 hypothetical protein YP_001488852.1 3614618 D 315750 CDS YP_001488853.1 157694391 5622943 complement(3615112..3615735) 1 NC_009848.1 nucleoside diphosphate hydrolase 3615735 5622943 BPUM_3649 Bacillus pumilus SAFR-032 nucleoside diphosphate hydrolase YP_001488853.1 3615112 R 315750 CDS YP_001488854.1 157694392 5622944 3615906..3616112 1 NC_009848.1 transcriptional regulator 3616112 5622944 BPUM_3650 Bacillus pumilus SAFR-032 transcriptional regulator YP_001488854.1 3615906 D 315750 CDS YP_001488855.1 157694393 5622945 3616109..3616789 1 NC_009848.1 hypothetical protein 3616789 5622945 BPUM_3651 Bacillus pumilus SAFR-032 hypothetical protein YP_001488855.1 3616109 D 315750 CDS YP_001488856.1 157694394 5622946 complement(3616838..3618184) 1 NC_009848.1 AnsP YdgF; APC family amino acid-polyamine-organocation transporter 3618184 aapA 5622946 aapA Bacillus pumilus SAFR-032 APC family amino acid-polyamine-organocation transporter YP_001488856.1 3616838 R 315750 CDS YP_001488857.1 157694395 5622947 3618691..3619713 1 NC_009848.1 PurR; LacI family transcriptional regulator 3619713 degA 5622947 degA Bacillus pumilus SAFR-032 LacI family transcriptional regulator YP_001488857.1 3618691 D 315750 CDS YP_001488858.1 157694396 5622948 3619710..3620006 1 NC_009848.1 hypothetical protein 3620006 5622948 BPUM_3654 Bacillus pumilus SAFR-032 hypothetical protein YP_001488858.1 3619710 D 315750 CDS YP_001488859.1 157694397 5622949 3620158..3621339 1 NC_009848.1 major facilitator superfamily transporter 3621339 yfkL1 5622949 yfkL1 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001488859.1 3620158 D 315750 CDS YP_001488860.1 157694398 5622950 3621358..3622260 1 NC_009848.1 shikimate dehydrogenase 3622260 5622950 BPUM_3656 Bacillus pumilus SAFR-032 shikimate dehydrogenase YP_001488860.1 3621358 D 315750 CDS YP_001488861.1 157694399 5622951 complement(3622489..3623682) 1 NC_009848.1 major facilitator superfamily transporter 3623682 yfkL2 5622951 yfkL2 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001488861.1 3622489 R 315750 CDS YP_001488862.1 157694400 5622952 complement(3624015..3624629) 1 NC_009848.1 hypothetical protein 3624629 5622952 BPUM_3658 Bacillus pumilus SAFR-032 hypothetical protein YP_001488862.1 3624015 R 315750 CDS YP_001488863.1 157694401 5622953 complement(3625067..3626302) 1 NC_009848.1 tellurium resistance protein 3626302 5622953 BPUM_3659 Bacillus pumilus SAFR-032 tellurium resistance protein YP_001488863.1 3625067 R 315750 CDS YP_001488864.1 157694402 5622954 3626464..3626625 1 NC_009848.1 hypothetical protein 3626625 5622954 BPUM_3660 Bacillus pumilus SAFR-032 hypothetical protein YP_001488864.1 3626464 D 315750 CDS YP_001488865.1 157694403 5622955 complement(3626630..3627610) 1 NC_009848.1 hypothetical protein 3627610 5622955 BPUM_3661 Bacillus pumilus SAFR-032 hypothetical protein YP_001488865.1 3626630 R 315750 CDS YP_001488866.1 157694404 5622956 complement(3627766..3629202) 1 NC_009848.1 6-phospho-beta-glucosidase 3629202 bglA 5622956 bglA Bacillus pumilus SAFR-032 6-phospho-beta-glucosidase YP_001488866.1 3627766 R 315750 CDS YP_001488867.1 157694405 5622957 3629391..3630101 1 NC_009848.1 PhnF; transcriptional regulator 3630101 yydK 5622957 yydK Bacillus pumilus SAFR-032 transcriptional regulator YP_001488867.1 3629391 D 315750 CDS YP_001488868.1 157694406 5622958 complement(3630151..3631161) 1 NC_009848.1 hypothetical protein 3631161 5622958 BPUM_3664 Bacillus pumilus SAFR-032 hypothetical protein YP_001488868.1 3630151 R 315750 CDS YP_001488869.1 157694407 5622959 complement(3631243..3633354) 1 NC_009848.1 hypothetical protein 3633354 5622959 BPUM_3665 Bacillus pumilus SAFR-032 hypothetical protein YP_001488869.1 3631243 R 315750 CDS YP_001488870.1 157694408 5622960 3633667..3634563 1 NC_009848.1 phenazine biosynthesis protein 3634563 5622960 BPUM_3666 Bacillus pumilus SAFR-032 phenazine biosynthesis protein YP_001488870.1 3633667 D 315750 CDS YP_001488871.1 157694409 5622961 complement(3634607..3635479) 1 NC_009848.1 LysR family transcriptional regulator 3635479 yvbU 5622961 yvbU Bacillus pumilus SAFR-032 LysR family transcriptional regulator YP_001488871.1 3634607 R 315750 CDS YP_001488872.1 157694410 5622962 complement(3635485..3635994) 1 NC_009848.1 hypothetical protein 3635994 yxjI 5622962 yxjI Bacillus pumilus SAFR-032 hypothetical protein YP_001488872.1 3635485 R 315750 CDS YP_001488873.1 157694411 5622963 complement(3636100..3636345) 1 NC_009848.1 hypothetical protein 3636345 5622963 BPUM_3669 Bacillus pumilus SAFR-032 hypothetical protein YP_001488873.1 3636100 R 315750 CDS YP_001488874.1 157694412 5622964 complement(3636512..3637057) 1 NC_009848.1 hypothetical protein 3637057 5622964 BPUM_3670 Bacillus pumilus SAFR-032 hypothetical protein YP_001488874.1 3636512 R 315750 CDS YP_001488875.1 157694413 5622965 3637140..3637406 1 NC_009848.1 hypothetical protein 3637406 5622965 BPUM_3671 Bacillus pumilus SAFR-032 hypothetical protein YP_001488875.1 3637140 D 315750 CDS YP_001488876.1 157694414 5622966 3637403..3637663 1 NC_009848.1 hypothetical protein 3637663 5622966 BPUM_3672 Bacillus pumilus SAFR-032 hypothetical protein YP_001488876.1 3637403 D 315750 CDS YP_001488877.1 157694415 5622967 complement(3637721..3638569) 1 NC_009848.1 Zn-dependent hydrolase 3638569 5622967 BPUM_3673 Bacillus pumilus SAFR-032 Zn-dependent hydrolase YP_001488877.1 3637721 R 315750 CDS YP_001488878.1 157694416 5622968 complement(3638676..3641123) 1 NC_009848.1 DNA helicase 3641123 5622968 BPUM_3674 Bacillus pumilus SAFR-032 DNA helicase YP_001488878.1 3638676 R 315750 CDS YP_001488879.1 157694417 5622969 complement(3641133..3641894) 1 NC_009848.1 hypothetical protein 3641894 5622969 BPUM_3675 Bacillus pumilus SAFR-032 hypothetical protein YP_001488879.1 3641133 R 315750 CDS YP_001488880.1 157694418 5622970 complement(3642589..3643068) 1 NC_009848.1 SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 3643068 yydA 5622970 yydA Bacillus pumilus SAFR-032 rRNA large subunit methyltransferase YP_001488880.1 3642589 R 315750 CDS YP_001488881.1 157694419 5622971 complement(3643481..3644311) 1 NC_009848.1 YbaF; cobalt ABC transporter 3644311 cbiQ 5622971 cbiQ Bacillus pumilus SAFR-032 cobalt ABC transporter YP_001488881.1 3643481 R 315750 CDS YP_001488882.1 157694420 5622972 complement(3644302..3646017) 1 NC_009848.1 cobalt ABC transporter ATP-binding protein 3646017 ykoD 5622972 ykoD Bacillus pumilus SAFR-032 cobalt ABC transporter ATP-binding protein YP_001488882.1 3644302 R 315750 CDS YP_001488883.1 157694421 5622973 complement(3646037..3646594) 1 NC_009848.1 hypothetical protein 3646594 5622973 BPUM_3679 Bacillus pumilus SAFR-032 hypothetical protein YP_001488883.1 3646037 R 315750 CDS YP_001488884.1 157694422 5622974 complement(3646609..3647469) 1 NC_009848.1 hypothetical protein 3647469 5622974 BPUM_3680 Bacillus pumilus SAFR-032 hypothetical protein YP_001488884.1 3646609 R 315750 CDS YP_001488885.1 157694423 5622975 3648043..3648732 1 NC_009848.1 hypothetical protein 3648732 5622975 BPUM_3681 Bacillus pumilus SAFR-032 hypothetical protein YP_001488885.1 3648043 D 315750 CDS YP_001488886.1 157694424 5622976 3648733..3649614 1 NC_009848.1 multidrug ABC transporter ATP-binding protein 3649614 5622976 BPUM_3682 Bacillus pumilus SAFR-032 multidrug ABC transporter ATP-binding protein YP_001488886.1 3648733 D 315750 CDS YP_001488887.1 157694425 5622977 complement(3649654..3650190) 1 NC_009848.1 GNAT family acetyltransferase 3650190 yycN 5622977 yycN Bacillus pumilus SAFR-032 GNAT family acetyltransferase YP_001488887.1 3649654 R 315750 CDS YP_001488888.1 157694426 5622978 complement(3650187..3651374) 1 NC_009848.1 YycK; peptidase 3651374 yyxA 5622978 yyxA Bacillus pumilus SAFR-032 peptidase YP_001488888.1 3650187 R 315750 CDS YP_001488889.1 157694427 5622979 complement(3651456..3652250) 1 NC_009848.1 metallo-beta-lactamase family protein 3652250 yycJ 5622979 yycJ Bacillus pumilus SAFR-032 metallo-beta-lactamase family protein YP_001488889.1 3651456 R 315750 CDS YP_001488890.1 157694428 5622980 complement(3652257..3653120) 1 NC_009848.1 hypothetical protein 3653120 yycI 5622980 yycI Bacillus pumilus SAFR-032 hypothetical protein YP_001488890.1 3652257 R 315750 CDS YP_001488891.1 157694429 5622981 complement(3653107..3654495) 1 NC_009848.1 hypothetical protein 3654495 yycH 5622981 yycH Bacillus pumilus SAFR-032 hypothetical protein YP_001488891.1 3653107 R 315750 CDS YP_001488892.1 157694430 5622982 complement(3654476..3656314) 1 NC_009848.1 sensor histidine kinase 3656314 yycG 5622982 yycG Bacillus pumilus SAFR-032 sensor histidine kinase YP_001488892.1 3654476 R 315750 CDS YP_001488893.1 157694431 5622983 complement(3656322..3657029) 1 NC_009848.1 response regulator 3657029 yycF 5622983 yycF Bacillus pumilus SAFR-032 response regulator YP_001488893.1 3656322 R 315750 CDS YP_001488894.1 157694432 5622988 3658119..3658643 1 NC_009848.1 peroxiredoxin 3658643 5622988 BPUM_3690 Bacillus pumilus SAFR-032 peroxiredoxin YP_001488894.1 3658119 D 315750 CDS YP_001488895.1 157694433 5622989 complement(3658874..3659083) 1 NC_009848.1 hypothetical protein 3659083 5622989 BPUM_3691 Bacillus pumilus SAFR-032 hypothetical protein YP_001488895.1 3658874 R 315750 CDS YP_001488896.1 157694434 5622990 complement(3659099..3660232) 1 NC_009848.1 hypothetical protein 3660232 5622990 BPUM_3692 Bacillus pumilus SAFR-032 hypothetical protein YP_001488896.1 3659099 R 315750 CDS YP_001488897.1 157694435 5622991 complement(3660369..3661658) 1 NC_009848.1 catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase 3661658 purA 5622991 purA Bacillus pumilus SAFR-032 adenylosuccinate synthetase YP_001488897.1 3660369 R 315750 CDS YP_001488898.1 157694436 5622992 complement(3661875..3662486) 1 NC_009848.1 TetR family transcriptional regulator 3662486 5622992 BPUM_3694 Bacillus pumilus SAFR-032 TetR family transcriptional regulator YP_001488898.1 3661875 R 315750 CDS YP_001488899.1 157694437 5622993 3662593..3663798 1 NC_009848.1 YjiB; cytochrome P450 3663798 5622993 BPUM_3695 Bacillus pumilus SAFR-032 cytochrome P450 YP_001488899.1 3662593 D 315750 CDS YP_001488900.1 157694438 5622994 complement(3663829..3664242) 1 NC_009848.1 possible glyoxalase; hypothetical protein 3664242 yycE 5622994 yycE Bacillus pumilus SAFR-032 hypothetical protein YP_001488900.1 3663829 R 315750 CDS YP_001488901.1 157694439 5622995 complement(3664372..3665736) 1 NC_009848.1 unwinds double stranded DNA; replicative DNA helicase 3665736 dnaC 5622995 dnaC Bacillus pumilus SAFR-032 replicative DNA helicase YP_001488901.1 3664372 R 315750 CDS YP_001488902.1 157694440 5622996 complement(3665947..3666912) 1 NC_009848.1 hypothetical protein 3666912 ybdO 5622996 ybdO Bacillus pumilus SAFR-032 hypothetical protein YP_001488902.1 3665947 R 315750 CDS YP_001488903.1 157694441 5622997 3667022..3667879 1 NC_009848.1 hypothetical protein 3667879 ybdN 5622997 ybdN Bacillus pumilus SAFR-032 hypothetical protein YP_001488903.1 3667022 D 315750 CDS YP_001488904.1 157694442 5622998 3668226..3669842 1 NC_009848.1 AraC family transcription regulator 3669842 ybbB 5622998 ybbB Bacillus pumilus SAFR-032 AraC family transcription regulator YP_001488904.1 3668226 D 315750 CDS YP_001488905.1 157694443 5622999 3669941..3670912 1 NC_009848.1 iron-binding ABC transporter ATP-binding protein 3670912 feuA 5622999 feuA Bacillus pumilus SAFR-032 iron-binding ABC transporter ATP-binding protein YP_001488905.1 3669941 D 315750 CDS YP_001488906.1 157694444 5623000 3670959..3671690 1 NC_009848.1 esterase 3671690 ybbA 5623000 ybbA Bacillus pumilus SAFR-032 esterase YP_001488906.1 3670959 D 315750 CDS YP_001488907.1 157694445 5623001 3671757..3671927 1 NC_009848.1 hypothetical protein 3671927 yycC 5623001 yycC Bacillus pumilus SAFR-032 hypothetical protein YP_001488907.1 3671757 D 315750 CDS YP_001488908.1 157694446 5623002 3671949..3673157 1 NC_009848.1 YycB; major facilitator superfamily transporter 3673157 5623002 BPUM_3704 Bacillus pumilus SAFR-032 major facilitator superfamily transporter YP_001488908.1 3671949 D 315750 CDS YP_001488909.1 157694447 5623003 complement(3673203..3673652) 1 NC_009848.1 in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 3673652 rplI 5623003 rplI Bacillus pumilus SAFR-032 50S ribosomal protein L9 YP_001488909.1 3673203 R 315750 CDS YP_001488910.1 157694448 5623004 complement(3673649..3675637) 1 NC_009848.1 DHH family phosphoesterase 3675637 yybT 5623004 yybT Bacillus pumilus SAFR-032 DHH family phosphoesterase YP_001488910.1 3673649 R 315750 CDS YP_001488911.1 157694449 5623005 complement(3675659..3676615) 1 NC_009848.1 hypothetical protein 3676615 yybS 5623005 yybS Bacillus pumilus SAFR-032 hypothetical protein YP_001488911.1 3675659 R 315750 CDS YP_001488912.1 157694450 5623006 3676900..3677826 1 NC_009848.1 catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 3677826 ppaC 5623006 ppaC Bacillus pumilus SAFR-032 putative manganese-dependent inorganic pyrophosphatase YP_001488912.1 3676900 D 315750 CDS YP_001488913.1 157694451 5623007 complement(3677874..3678731) 1 NC_009848.1 anti-SigV factor 3678731 yrhM 5623007 yrhM Bacillus pumilus SAFR-032 anti-SigV factor YP_001488913.1 3677874 R 315750 CDS YP_001488914.1 157694452 5623008 complement(3678732..3679226) 1 NC_009848.1 ECF family DNA-directed RNA polymerase sigma subunit SigV 3679226 sigV 5623008 sigV Bacillus pumilus SAFR-032 ECF family DNA-directed RNA polymerase sigma subunit SigV YP_001488914.1 3678732 R 315750 CDS YP_001488915.1 157694453 5623009 complement(3679375..3680031) 1 NC_009848.1 hypothetical protein 3680031 5623009 BPUM_3711 Bacillus pumilus SAFR-032 hypothetical protein YP_001488915.1 3679375 R 315750 CDS YP_001488916.1 157694454 5623010 3680119..3681726 1 NC_009848.1 YxlI; catalase KatX1 3681726 katX1 5623010 katX1 Bacillus pumilus SAFR-032 catalase KatX1 YP_001488916.1 3680119 D 315750 CDS YP_001488917.1 157694455 5623011 complement(3681775..3682398) 1 NC_009848.1 trp repressor binding protein 3682398 5623011 BPUM_3713 Bacillus pumilus SAFR-032 trp repressor binding protein YP_001488917.1 3681775 R 315750 CDS YP_001488918.1 157694456 5623012 complement(3682462..3683070) 1 NC_009848.1 phospholipase/carboxylesterase family protein 3683070 5623012 BPUM_3714 Bacillus pumilus SAFR-032 phospholipase/carboxylesterase family protein YP_001488918.1 3682462 R 315750 CDS YP_001488919.1 157694457 5623013 complement(3683067..3684059) 1 NC_009848.1 glyoxalase/bleomycin resistance protein; lactoylglutathione lyase 3684059 5623013 BPUM_3715 Bacillus pumilus SAFR-032 lactoylglutathione lyase YP_001488919.1 3683067 R 315750 CDS YP_001488920.1 157694458 5623014 complement(3684229..3685746) 1 NC_009848.1 glycine betaine/L-proline ABC transporter binding protein 3685746 5623014 BPUM_3716 Bacillus pumilus SAFR-032 glycine betaine/L-proline ABC transporter binding protein YP_001488920.1 3684229 R 315750 CDS YP_001488921.1 157694459 5623015 complement(3685739..3686704) 1 NC_009848.1 glycine betaine/L-proline ABC transporter ATP-binding protein 3686704 5623015 BPUM_3717 Bacillus pumilus SAFR-032 glycine betaine/L-proline ABC transporter ATP-binding protein YP_001488921.1 3685739 R 315750 CDS YP_001488922.1 157694460 5623016 complement(3686906..3687145) 1 NC_009848.1 binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 3687145 rpsR 5623016 rpsR Bacillus pumilus SAFR-032 30S ribosomal protein S18 YP_001488922.1 3686906 R 315750 CDS YP_001488923.1 157694461 5623017 complement(3687189..3687734) 1 NC_009848.1 single-strand DNA-binding protein 3687734 ssb 5623017 ssb Bacillus pumilus SAFR-032 single-strand DNA-binding protein YP_001488923.1 3687189 R 315750 CDS YP_001488924.1 157694462 5623018 complement(3687771..3688058) 1 NC_009848.1 binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 3688058 rpsF 5623018 rpsF Bacillus pumilus SAFR-032 30S ribosomal protein S6 YP_001488924.1 3687771 R 315750 CDS YP_001488925.1 157694463 5623019 complement(3688167..3689267) 1 NC_009848.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 3689267 yyaF 5623019 yyaF Bacillus pumilus SAFR-032 GTP-dependent nucleic acid-binding protein EngD YP_001488925.1 3688167 R 315750 CDS YP_001488926.1 157694464 5623020 complement(3689484..3689690) 1 NC_009848.1 hypothetical protein 3689690 5623020 BPUM_3722 Bacillus pumilus SAFR-032 hypothetical protein YP_001488926.1 3689484 R 315750 CDS YP_001488927.1 157694465 5623021 3689952..3691295 1 NC_009848.1 hypothetical protein 3691295 5623021 BPUM_3723 Bacillus pumilus SAFR-032 hypothetical protein YP_001488927.1 3689952 D 315750 CDS YP_001488928.1 157694466 5623022 3691311..3691721 1 NC_009848.1 hypothetical protein 3691721 5623022 BPUM_3724 Bacillus pumilus SAFR-032 hypothetical protein YP_001488928.1 3691311 D 315750 CDS YP_001488929.1 157694467 5623023 complement(3691747..3692805) 1 NC_009848.1 hypothetical protein 3692805 yyaD 5623023 yyaD Bacillus pumilus SAFR-032 hypothetical protein YP_001488929.1 3691747 R 315750 CDS YP_001488930.1 157694468 5623024 3692827..3693501 1 NC_009848.1 hypothetical protein 3693501 yyaC 5623024 yyaC Bacillus pumilus SAFR-032 hypothetical protein YP_001488930.1 3692827 D 315750 CDS YP_001488931.1 157694469 5623025 complement(3693527..3694387) 1 NC_009848.1 stage 0 DNA-binding protein 3694387 spo0J 5623025 spo0J Bacillus pumilus SAFR-032 stage 0 DNA-binding protein YP_001488931.1 3693527 R 315750 CDS YP_001488932.1 157694470 5623026 complement(3694374..3695174) 1 NC_009848.1 chromosome partitioning protein transcriptional regulator 3695174 soj 5623026 soj Bacillus pumilus SAFR-032 chromosome partitioning protein transcriptional regulator YP_001488932.1 3694374 R 315750 CDS YP_001488933.1 157694471 5623027 complement(3695369..3696193) 1 NC_009848.1 hypothetical protein 3696193 5623027 BPUM_3729 Bacillus pumilus SAFR-032 hypothetical protein YP_001488933.1 3695369 R 315750 CDS YP_001488934.1 157694472 5623028 complement(3696312..3697187) 1 NC_009848.1 stage 0 sporulation protein J; stage 0 DNA-binding protein 3697187 spoOJ 5623028 spoOJ Bacillus pumilus SAFR-032 stage 0 DNA-binding protein YP_001488934.1 3696312 R 315750 CDS YP_001488935.1 157694473 5623029 complement(3697293..3698012) 1 NC_009848.1 glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 3698012 gidB 5623029 gidB Bacillus pumilus SAFR-032 16S rRNA methyltransferase GidB YP_001488935.1 3697293 R 315750 CDS YP_001488936.1 157694474 5623030 complement(3698026..3699912) 1 NC_009848.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 3699912 gidA2 5623030 gidA2 Bacillus pumilus SAFR-032 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_001488936.1 3698026 R 315750 CDS YP_001488937.1 157694475 5623031 complement(3699930..3701309) 1 NC_009848.1 in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 3701309 trmE 5623031 trmE Bacillus pumilus SAFR-032 tRNA modification GTPase TrmE YP_001488937.1 3699930 R 315750 CDS YP_001488938.1 157694476 5623032 complement(3701713..3702336) 1 NC_009848.1 SpoIIIJ-associated protein 3702336 jag 5623032 jag Bacillus pumilus SAFR-032 SpoIIIJ-associated protein YP_001488938.1 3701713 R 315750 CDS YP_001488939.1 157694477 5623033 complement(3702333..3703124) 1 NC_009848.1 involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site; necessary for sporulation; OxaA-like protein precursor 3703124 spoIIIJ 5623033 spoIIIJ Bacillus pumilus SAFR-032 OxaA-like protein precursor YP_001488939.1 3702333 R 315750 CDS YP_001488940.1 157694478 5623034 complement(3703273..3703632) 1 NC_009848.1 protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 3703632 rnpA 5623034 rnpA Bacillus pumilus SAFR-032 ribonuclease P YP_001488940.1 3703273 R 315750 CDS YP_001488941.1 157694479 5623035 complement(3703711..3703845) 1 NC_009848.1 50S ribosomal protein L34 3703845 rpmH 5623035 rpmH Bacillus pumilus SAFR-032 50S ribosomal protein L34 YP_001488941.1 3703711 R 315750 CDS