-- dump date 20140618_223329 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 315750000001 SEQ_END SEQ_END NC_009848.1 3704465 3704465 DR NC_009848.1; contig end 3704465..3704465 Bacillus pumilus SAFR-032 YP_001485261.1 CDS dnaA NC_009848.1 1 1341 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1..1341 Bacillus pumilus SAFR-032 5623036 YP_001485262.1 CDS dnaN NC_009848.1 1409 2674 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1409..2674 Bacillus pumilus SAFR-032 5619212 YP_001485263.1 CDS yaaA NC_009848.1 2801 3040 D hypothetical protein 2801..3040 Bacillus pumilus SAFR-032 5619213 YP_001485264.1 CDS recF NC_009848.1 3057 4169 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 3057..4169 Bacillus pumilus SAFR-032 5619214 YP_001485265.1 CDS yaaB NC_009848.1 4178 4432 D hypothetical protein 4178..4432 Bacillus pumilus SAFR-032 5619215 YP_001485266.1 CDS gyrB NC_009848.1 4478 6406 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 4478..6406 Bacillus pumilus SAFR-032 5619216 YP_001485267.1 CDS gyrA NC_009848.1 6639 9158 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 6639..9158 Bacillus pumilus SAFR-032 5619217 YP_001485268.1 CDS csfB NC_009848.1 14579 14770 D possible sigma-F transcribed protein; hypothetical protein 14579..14770 Bacillus pumilus SAFR-032 5619221 YP_001485269.1 CDS xpaC NC_009848.1 14900 15514 D 5-bromo-4-chloroindolyl phosphate hydrolysis protein 14900..15514 Bacillus pumilus SAFR-032 5619222 YP_001485270.1 CDS yaaN NC_009848.1 15726 16592 D toxic anion resistance protein TelA 15726..16592 Bacillus pumilus SAFR-032 5619223 YP_001485271.1 CDS yaaO NC_009848.1 16670 18079 D LdcC; arginine/lysine/ornithine decarboxylase 16670..18079 Bacillus pumilus SAFR-032 5619224 YP_001485272.1 CDS tmk NC_009848.1 18076 18714 D catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase 18076..18714 Bacillus pumilus SAFR-032 5619225 YP_001485273.1 CDS yaaQ NC_009848.1 18794 19123 D hypothetical protein 18794..19123 Bacillus pumilus SAFR-032 5619226 YP_001485274.1 CDS yaaR NC_009848.1 19136 19576 D hypothetical protein 19136..19576 Bacillus pumilus SAFR-032 5619227 YP_001485275.1 CDS holB NC_009848.1 19588 20577 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 19588..20577 Bacillus pumilus SAFR-032 5619228 YP_001485276.1 CDS yaaT NC_009848.1 20580 21407 D possible stage 0 sporulation protein; signal peptidase II 20580..21407 Bacillus pumilus SAFR-032 5619229 YP_001485277.1 CDS yabA NC_009848.1 21422 21775 D in Bacillus subtilis this protein is involved in the negative regulation of DNA replication initiation; interacts with DnaN and DnaA; DNA replication intiation control protein YabA 21422..21775 Bacillus pumilus SAFR-032 5619230 YP_001485278.1 CDS yabB NC_009848.1 21831 22574 D O-methyltransferase 21831..22574 Bacillus pumilus SAFR-032 5619231 YP_001485279.1 CDS yazA NC_009848.1 22561 22857 D endonuclease 22561..22857 Bacillus pumilus SAFR-032 5619232 YP_001485280.1 CDS yabC NC_009848.1 22835 23713 D tetrapyrrole (corrin/porphyrin) methylase; methyltransferase 22835..23713 Bacillus pumilus SAFR-032 5619233 YP_001485281.1 CDS BPUM_0021 NC_009848.1 23759 24043 R transcriptional regulator complement(23759..24043) Bacillus pumilus SAFR-032 5619234 YP_001485282.1 CDS metG NC_009848.1 24570 26570 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 24570..26570 Bacillus pumilus SAFR-032 5619235 YP_001485283.1 CDS yabD NC_009848.1 26653 27420 D TatD deoxyribonuclease 26653..27420 Bacillus pumilus SAFR-032 5619236 YP_001485284.1 CDS yabE NC_009848.1 27665 28867 D hypothetical protein 27665..28867 Bacillus pumilus SAFR-032 5619237 YP_001485285.1 CDS rnmV NC_009848.1 29028 29588 D ribonuclease M5 29028..29588 Bacillus pumilus SAFR-032 5619238 YP_001485286.1 CDS ksgA NC_009848.1 29581 30459 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 29581..30459 Bacillus pumilus SAFR-032 5619239 YP_001485287.1 CDS yabG NC_009848.1 30590 31474 D spore coat protein YabG; sporulation-specific U57 family peptidase 30590..31474 Bacillus pumilus SAFR-032 5619240 YP_001485288.1 CDS veg NC_009848.1 31688 31945 D hypothetical protein 31688..31945 Bacillus pumilus SAFR-032 5619241 YP_001485289.1 CDS sspF NC_009848.1 32109 32294 D small acid-soluble spore protein F 32109..32294 Bacillus pumilus SAFR-032 5619242 YP_001485290.1 CDS ipk NC_009848.1 32441 33310 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 32441..33310 Bacillus pumilus SAFR-032 5619243 YP_001485291.1 CDS purR NC_009848.1 33366 34199 D pur operon repressor 33366..34199 Bacillus pumilus SAFR-032 5619244 YP_001485292.1 CDS yabJ NC_009848.1 34236 34613 D hypothetical protein 34236..34613 Bacillus pumilus SAFR-032 5619245 YP_001485293.1 CDS spoVG NC_009848.1 34839 35135 D stage V sporulation protein G; essential for spore formation and a negative regulator of asymmetric septation in Bacillus; involved in methicillin-resistance, biofilm formation and capsular polysaccharide synthesis in Staphylococcus; regulatory protein SpoVG 34839..35135 Bacillus pumilus SAFR-032 5619246 YP_001485294.1 CDS glmU NC_009848.1 35305 36705 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 35305..36705 Bacillus pumilus SAFR-032 5619247 YP_001485295.1 CDS prs NC_009848.1 36728 37681 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 36728..37681 Bacillus pumilus SAFR-032 5619248 YP_001485296.1 CDS ctc NC_009848.1 37819 38445 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 37819..38445 Bacillus pumilus SAFR-032 5619249 YP_001485297.1 CDS spoVC NC_009848.1 38585 39151 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 38585..39151 Bacillus pumilus SAFR-032 5619250 YP_001485298.1 CDS yabK NC_009848.1 39207 39437 D hypothetical protein 39207..39437 Bacillus pumilus SAFR-032 5619251 YP_001485299.1 CDS mfd NC_009848.1 39505 43038 D transcription-repair coupling factor 39505..43038 Bacillus pumilus SAFR-032 5619252 YP_001485300.1 CDS spoVT NC_009848.1 43178 43714 D stage V sporulation protein T 43178..43714 Bacillus pumilus SAFR-032 5619253 YP_001485301.1 CDS yabM NC_009848.1 43909 45513 D MOP superfamily multidrug/oligosaccharidyl-lipid/polysaccharide flippase transporter 43909..45513 Bacillus pumilus SAFR-032 5619254 YP_001485302.1 CDS yabN NC_009848.1 45503 46987 D MazG family protein; tetrapyrrole methyltransferase family protein 45503..46987 Bacillus pumilus SAFR-032 5619255 YP_001485303.1 CDS yabO NC_009848.1 46984 47244 D S4 RNA-binding domain-containing protein 46984..47244 Bacillus pumilus SAFR-032 5619256 YP_001485304.1 CDS yabP NC_009848.1 47319 47627 D hypothetical protein 47319..47627 Bacillus pumilus SAFR-032 5619257 YP_001485305.1 CDS yabQ NC_009848.1 47624 48262 D possible spore cortex biosynthesis protein; hypothetical protein 47624..48262 Bacillus pumilus SAFR-032 5619258 YP_001485306.1 CDS divIC NC_009848.1 48281 48655 D cell-division initiation protein 48281..48655 Bacillus pumilus SAFR-032 5619259 YP_001485307.1 CDS yabR NC_009848.1 48738 49136 D hypothetical protein 48738..49136 Bacillus pumilus SAFR-032 5619260 YP_001485308.1 CDS spoIIE NC_009848.1 49690 52173 D stage II sporulation phosphoprotein phosphatase; phosphoprotein phosphatase 49690..52173 Bacillus pumilus SAFR-032 5619263 YP_001485309.1 CDS yabS NC_009848.1 52250 52984 D hypothetical protein 52250..52984 Bacillus pumilus SAFR-032 5619264 YP_001485310.1 CDS yabT NC_009848.1 52968 53975 D serine/threonine protein kinase 52968..53975 Bacillus pumilus SAFR-032 5619265 YP_001485311.1 CDS tilS NC_009848.1 54072 55475 D YacA; tRNA(Ile)-lysidine synthase 54072..55475 Bacillus pumilus SAFR-032 5619266 YP_001485312.1 CDS hprT NC_009848.1 55491 56030 D hypoxanthine phosphoribosyltransferase 55491..56030 Bacillus pumilus SAFR-032 5619267 YP_001485313.1 CDS ftsH NC_009848.1 56126 58030 D class III heat-shock protein; ATP-dependent zinc (Zn2+) protease; M41 family endopeptidase FtsH 56126..58030 Bacillus pumilus SAFR-032 5619268 YP_001485314.1 CDS yacB NC_009848.1 58188 58970 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 58188..58970 Bacillus pumilus SAFR-032 5619269 YP_001485315.1 CDS hslO NC_009848.1 58986 59861 D becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin 58986..59861 Bacillus pumilus SAFR-032 5619270 YP_001485316.1 CDS yacD NC_009848.1 59908 60816 D peptidyl-prolyl isomerase 59908..60816 Bacillus pumilus SAFR-032 5619271 YP_001485317.1 CDS cysK NC_009848.1 60894 61817 D cysteine synthase 60894..61817 Bacillus pumilus SAFR-032 5619272 YP_001485318.1 CDS pabB NC_009848.1 61942 63360 D anthranilate synthase component I 61942..63360 Bacillus pumilus SAFR-032 5619273 YP_001485319.1 CDS pabA NC_009848.1 63374 63967 D amphibolic enzyme subunit from Bacillus subtilis performs both in anthranilate and para-aminobenzoate synthesis; para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II 63374..63967 Bacillus pumilus SAFR-032 5619274 YP_001485320.1 CDS pabC NC_009848.1 63964 64812 D catalyzes the formation of 4-aminobenzoate and pyruvate from 4-amino-4-deoxychorismate; 4-amino-4-deoxychorismate lyase 63964..64812 Bacillus pumilus SAFR-032 5619275 YP_001485321.1 CDS sul NC_009848.1 64823 65680 D dihydropteroate synthase 64823..65680 Bacillus pumilus SAFR-032 5619276 YP_001485322.1 CDS folB NC_009848.1 65697 66035 D YacE; dihydroneopterin aldolase 65697..66035 Bacillus pumilus SAFR-032 5619277 YP_001485323.1 CDS folK NC_009848.1 66032 66535 D 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase 66032..66535 Bacillus pumilus SAFR-032 5619278 YP_001485324.1 CDS yazB NC_009848.1 66487 66720 D transcriptional regulator 66487..66720 Bacillus pumilus SAFR-032 5619279 YP_001485325.1 CDS yacF NC_009848.1 66713 67714 D Dus1; dihydrouridine synthase 66713..67714 Bacillus pumilus SAFR-032 5619280 YP_001485326.1 CDS lysS NC_009848.1 67805 69304 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 67805..69304 Bacillus pumilus SAFR-032 5619281 YP_001485327.1 CDS BPUM_0067 NC_009848.1 70863 70973 D hypothetical protein 70863..70973 Bacillus pumilus SAFR-032 5619282 YP_001485328.1 CDS ctsR NC_009848.1 76194 76658 D CtsR family transcriptional regulator 76194..76658 Bacillus pumilus SAFR-032 5619286 YP_001485329.1 CDS mcsA NC_009848.1 76664 77230 D nucleotide excision repair protein; transcriptional regulator 76664..77230 Bacillus pumilus SAFR-032 5619287 YP_001485330.1 CDS mcsB NC_009848.1 77235 78326 D YacI; ATP:guanido phosphotransferase 77235..78326 Bacillus pumilus SAFR-032 5619288 YP_001485331.1 CDS clpC NC_009848.1 78323 80758 D negative regulator of genetic competence MecB; class III stress response-related ATPase 78323..80758 Bacillus pumilus SAFR-032 5619289 YP_001485332.1 CDS radA NC_009848.1 80912 82231 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 80912..82231 Bacillus pumilus SAFR-032 5619290 YP_001485333.1 CDS disA NC_009848.1 82234 83313 D non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA 82234..83313 Bacillus pumilus SAFR-032 5619291 YP_001485334.1 CDS yacL NC_009848.1 83467 84567 D hypothetical protein 83467..84567 Bacillus pumilus SAFR-032 5619292 YP_001485335.1 CDS ispD NC_009848.1 84581 85270 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 84581..85270 Bacillus pumilus SAFR-032 5619293 YP_001485336.1 CDS ispF NC_009848.1 85274 85750 D catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate into 2-C-methyl-D-erythritol 2,4-cyclodiphosphate; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 85274..85750 Bacillus pumilus SAFR-032 5619294 YP_001485337.1 CDS gltX NC_009848.1 85845 87296 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 85845..87296 Bacillus pumilus SAFR-032 5619295 YP_001485338.1 CDS cysE NC_009848.1 87608 88261 D serine O-acetyltransferase 87608..88261 Bacillus pumilus SAFR-032 5619296 YP_001485339.1 CDS cysS NC_009848.1 88258 89658 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 88258..89658 Bacillus pumilus SAFR-032 5619297 YP_001485340.1 CDS yazC NC_009848.1 89662 90093 D ribonuclease III 89662..90093 Bacillus pumilus SAFR-032 5619298 YP_001485341.1 CDS yacO NC_009848.1 90077 90826 D tRNA/rRNA methyltransferase 90077..90826 Bacillus pumilus SAFR-032 5619299 YP_001485342.1 CDS yacP NC_009848.1 90829 91341 D hypothetical protein 90829..91341 Bacillus pumilus SAFR-032 5619300 YP_001485343.1 CDS sigH NC_009848.1 91405 92061 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; RNA polymerase factor sigma-70 91405..92061 Bacillus pumilus SAFR-032 5619301 YP_001485344.1 CDS rpmG NC_009848.1 92138 92287 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group have the CXXC motif; 50S ribosomal protein L33 92138..92287 Bacillus pumilus SAFR-032 5619302 YP_001485345.1 CDS secE NC_009848.1 92323 92499 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 92323..92499 Bacillus pumilus SAFR-032 5619303 YP_001485346.1 CDS nusG NC_009848.1 92670 93203 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 92670..93203 Bacillus pumilus SAFR-032 5619304 YP_001485347.1 CDS rplK NC_009848.1 93321 93800 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 93321..93800 Bacillus pumilus SAFR-032 5619305 YP_001485348.1 CDS rplA NC_009848.1 93900 94598 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 93900..94598 Bacillus pumilus SAFR-032 5619306 YP_001485349.1 CDS rplJ NC_009848.1 94857 95357 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 94857..95357 Bacillus pumilus SAFR-032 5619307 YP_001485350.1 CDS rplL NC_009848.1 95399 95764 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 95399..95764 Bacillus pumilus SAFR-032 5619308 YP_001485351.1 CDS ybxB NC_009848.1 95862 96467 D 16S rRNA methyltransferase 95862..96467 Bacillus pumilus SAFR-032 5619309 YP_001485352.1 CDS BPUM_0092 NC_009848.1 96554 96703 R hypothetical protein complement(96554..96703) Bacillus pumilus SAFR-032 5619310 YP_001485353.1 CDS rpoB NC_009848.1 96714 100304 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 96714..100304 Bacillus pumilus SAFR-032 5619311 YP_001485354.1 CDS rpoC NC_009848.1 100366 103965 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 100366..103965 Bacillus pumilus SAFR-032 5619312 YP_001485355.1 CDS ybxF NC_009848.1 104111 104359 D in Bacillus subtilis this non-essential protein associates with the ribosome; putative ribosomal protein L7Ae-like 104111..104359 Bacillus pumilus SAFR-032 5619313 YP_001485356.1 CDS rpsL NC_009848.1 104472 104891 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 104472..104891 Bacillus pumilus SAFR-032 5619314 YP_001485357.1 CDS rpsG NC_009848.1 105012 105482 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 105012..105482 Bacillus pumilus SAFR-032 5619315 YP_001485358.1 CDS fusA NC_009848.1 105537 107615 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 105537..107615 Bacillus pumilus SAFR-032 5619316 YP_001485359.1 CDS tufA NC_009848.1 107734 108924 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 107734..108924 Bacillus pumilus SAFR-032 5619317 YP_001485360.1 CDS ybaC NC_009848.1 109035 109994 D alpha/beta fold family hydrolase 109035..109994 Bacillus pumilus SAFR-032 5619318 YP_001485361.1 CDS rpsJ NC_009848.1 110213 110521 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 110213..110521 Bacillus pumilus SAFR-032 5619319 YP_001485362.1 CDS rplC NC_009848.1 110559 111188 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 110559..111188 Bacillus pumilus SAFR-032 5619320 YP_001485363.1 CDS rplD NC_009848.1 111216 111839 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 111216..111839 Bacillus pumilus SAFR-032 5619321 YP_001485364.1 CDS rplW NC_009848.1 111839 112126 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 111839..112126 Bacillus pumilus SAFR-032 5619322 YP_001485365.1 CDS rplB NC_009848.1 112155 112988 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 112155..112988 Bacillus pumilus SAFR-032 5619323 YP_001485366.1 CDS rpsS NC_009848.1 113046 113324 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 113046..113324 Bacillus pumilus SAFR-032 5619324 YP_001485367.1 CDS rplV NC_009848.1 113342 113683 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 113342..113683 Bacillus pumilus SAFR-032 5619325 YP_001485368.1 CDS rpsC NC_009848.1 113687 114343 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 113687..114343 Bacillus pumilus SAFR-032 5619326 YP_001485369.1 CDS rplP NC_009848.1 114345 114779 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 114345..114779 Bacillus pumilus SAFR-032 5619327 YP_001485370.1 CDS rpmC NC_009848.1 114745 114969 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 114745..114969 Bacillus pumilus SAFR-032 5619328 YP_001485371.1 CDS rpsQ NC_009848.1 114995 115258 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 114995..115258 Bacillus pumilus SAFR-032 5619329 YP_001485372.1 CDS rplN NC_009848.1 115298 115666 D 50S ribosomal protein L14 115298..115666 Bacillus pumilus SAFR-032 5619330 YP_001485373.1 CDS rplX NC_009848.1 115702 116013 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 115702..116013 Bacillus pumilus SAFR-032 5619331 YP_001485374.1 CDS rplE NC_009848.1 116039 116578 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 116039..116578 Bacillus pumilus SAFR-032 5619332 YP_001485375.1 CDS rpsN NC_009848.1 116601 116786 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 116601..116786 Bacillus pumilus SAFR-032 5619333 YP_001485376.1 CDS rpsH NC_009848.1 116818 117216 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 116818..117216 Bacillus pumilus SAFR-032 5619334 YP_001485377.1 CDS rplF NC_009848.1 117233 117784 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 117233..117784 Bacillus pumilus SAFR-032 5619335 YP_001485378.1 CDS rplR NC_009848.1 117817 118179 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 117817..118179 Bacillus pumilus SAFR-032 5619336 YP_001485379.1 CDS rpsE NC_009848.1 118204 118704 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 118204..118704 Bacillus pumilus SAFR-032 5619337 YP_001485380.1 CDS rpmD NC_009848.1 118718 118900 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 118718..118900 Bacillus pumilus SAFR-032 5619338 YP_001485381.1 CDS rplO NC_009848.1 118931 119371 D late assembly protein; 50S ribosomal protein L15 118931..119371 Bacillus pumilus SAFR-032 5619339 YP_001485382.1 CDS secY NC_009848.1 119373 120665 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 119373..120665 Bacillus pumilus SAFR-032 5619340 YP_001485383.1 CDS adk NC_009848.1 120721 121374 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 120721..121374 Bacillus pumilus SAFR-032 5619341 YP_001485384.1 CDS map NC_009848.1 121371 122117 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 121371..122117 Bacillus pumilus SAFR-032 5619342 YP_001485385.1 CDS infA NC_009848.1 122430 122648 D stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 122430..122648 Bacillus pumilus SAFR-032 5619344 YP_001485386.1 CDS rpmJ NC_009848.1 122680 122793 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 122680..122793 Bacillus pumilus SAFR-032 5619345 YP_001485387.1 CDS rpsM NC_009848.1 122815 123180 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 122815..123180 Bacillus pumilus SAFR-032 5619346 YP_001485388.1 CDS rpsK NC_009848.1 123201 123596 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 123201..123596 Bacillus pumilus SAFR-032 5619347 YP_001485389.1 CDS rpoA NC_009848.1 123772 124716 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 123772..124716 Bacillus pumilus SAFR-032 5619348 YP_001485390.1 CDS rplQ NC_009848.1 124793 125155 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 124793..125155 Bacillus pumilus SAFR-032 5619349 YP_001485391.1 CDS cbiO NC_009848.1 125280 126122 D with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 125280..126122 Bacillus pumilus SAFR-032 5619350 YP_001485392.1 CDS cbiO NC_009848.1 126098 126967 D with CbiNQ forms the ABC transporter for cobalt import; Bacillus spp. have two adjacent copies of this gene; cobalt transporter ATP-binding subunit 126098..126967 Bacillus pumilus SAFR-032 5619351 YP_001485393.1 CDS ybaF NC_009848.1 126964 127761 D cobalt ABC transporter 126964..127761 Bacillus pumilus SAFR-032 5619352 YP_001485394.1 CDS truA NC_009848.1 127773 128516 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 127773..128516 Bacillus pumilus SAFR-032 5619353 YP_001485395.1 CDS rplM NC_009848.1 128683 129120 D in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 128683..129120 Bacillus pumilus SAFR-032 5619354 YP_001485396.1 CDS rpsI NC_009848.1 129141 129533 D forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 129141..129533 Bacillus pumilus SAFR-032 5619355 YP_001485397.1 CDS ynaD NC_009848.1 129726 130241 D ribosomal protein acetyltransferase 129726..130241 Bacillus pumilus SAFR-032 5619356 YP_001485398.1 CDS BPUM_0139 NC_009848.1 130339 131085 D metal-dependent hydrolase 130339..131085 Bacillus pumilus SAFR-032 5619357 YP_001485399.1 CDS BPUM_0140 NC_009848.1 131105 131578 D transcriptional regulator 131105..131578 Bacillus pumilus SAFR-032 5619358 YP_001485400.1 CDS BPUM_0141 NC_009848.1 131669 132685 D D-alanyl-D-alanine carboxypeptidase 131669..132685 Bacillus pumilus SAFR-032 5619359 YP_001485401.1 CDS BPUM_0142 NC_009848.1 132722 133291 R hypothetical protein complement(132722..133291) Bacillus pumilus SAFR-032 5619360 YP_001485402.1 CDS ybaK NC_009848.1 133438 133881 D hypothetical protein 133438..133881 Bacillus pumilus SAFR-032 5619361 YP_001485403.1 CDS cwlD NC_009848.1 133940 134653 D N-acetylmuramoyl-L-alanine amidase 133940..134653 Bacillus pumilus SAFR-032 5619362 YP_001485404.1 CDS ybaL NC_009848.1 134757 135815 D ATPase 134757..135815 Bacillus pumilus SAFR-032 5619363 YP_001485405.1 CDS gerD NC_009848.1 135854 136429 R spore germination protein D complement(135854..136429) Bacillus pumilus SAFR-032 5619364 YP_001485406.1 CDS kbaA NC_009848.1 136520 137122 D KinB signaling pathway activation protein KbaA 136520..137122 Bacillus pumilus SAFR-032 5619365 YP_001485407.1 CDS ybaN NC_009848.1 137115 137879 R sporulation polysaccharide deacetylase complement(137115..137879) Bacillus pumilus SAFR-032 5619366 YP_001485408.1 CDS BPUM_0149 NC_009848.1 144100 144294 D hypothetical protein 144100..144294 Bacillus pumilus SAFR-032 5619371 YP_001485409.1 CDS hag1 NC_009848.1 144291 145259 D structural flagella protein; flagellin 144291..145259 Bacillus pumilus SAFR-032 5619372 YP_001485410.1 CDS sulP NC_009848.1 145590 147032 D SulP family sulfate permease 145590..147032 Bacillus pumilus SAFR-032 5619373 YP_001485411.1 CDS BPUM_0152 NC_009848.1 147091 148056 D bile acid:sodium (Na+) symporter 147091..148056 Bacillus pumilus SAFR-032 5619374 YP_001485412.1 CDS ybbC NC_009848.1 148096 149343 R hypothetical protein complement(148096..149343) Bacillus pumilus SAFR-032 5619375 YP_001485413.1 CDS ybbD NC_009848.1 149355 151274 R glycoside hydrolase complement(149355..151274) Bacillus pumilus SAFR-032 5619376 YP_001485414.1 CDS ybbE NC_009848.1 151288 152643 R hypothetical protein complement(151288..152643) Bacillus pumilus SAFR-032 5619377 YP_001485415.1 CDS ybbF NC_009848.1 152663 154036 R PTS family sucrose (suc) porter component IIBC complement(152663..154036) Bacillus pumilus SAFR-032 5619378 YP_001485416.1 CDS BPUM_0157 NC_009848.1 154033 154902 R ybbH; transcriptional regulator complement(154033..154902) Bacillus pumilus SAFR-032 5619379 YP_001485417.1 CDS murQ NC_009848.1 154917 155828 R catalyzes the cleavage of the lactyl ether moiety of N-acetylmuramic acid-6-phosphate (MurNAc-6-P) to form N-acetylglucosamine-6-phosphate (GlcNAc-6-P) and lactate; involved in MurNAc dissimilation pathway; N-acetylmuramic acid 6-phosphate etherase complement(154917..155828) Bacillus pumilus SAFR-032 5619380 YP_001485418.1 CDS rocF NC_009848.1 156606 157517 D arginase 156606..157517 Bacillus pumilus SAFR-032 5619386 YP_001485419.1 CDS sigW NC_009848.1 157677 158264 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: this protein is involved in detoxification and protection against antimicrobial; RNA polymerase sigma factor SigW 157677..158264 Bacillus pumilus SAFR-032 5619387 YP_001485420.1 CDS ybbM NC_009848.1 158279 158905 D hypothetical protein 158279..158905 Bacillus pumilus SAFR-032 5619388 YP_001485421.1 CDS ybbP NC_009848.1 159124 159945 D YbbQ; hypothetical protein 159124..159945 Bacillus pumilus SAFR-032 5619389 YP_001485422.1 CDS ybbR NC_009848.1 159938 161347 D hypothetical protein 159938..161347 Bacillus pumilus SAFR-032 5619390 YP_001485423.1 CDS glmM NC_009848.1 161373 162719 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 161373..162719 Bacillus pumilus SAFR-032 5619391 YP_001485424.1 CDS glmS NC_009848.1 163295 165097 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 163295..165097 Bacillus pumilus SAFR-032 5619392 YP_001485425.1 CDS BPUM_0166 NC_009848.1 165160 165357 D hypothetical protein 165160..165357 Bacillus pumilus SAFR-032 5619393 YP_001485426.1 CDS BPUM_0167 NC_009848.1 165605 165961 D hypothetical protein 165605..165961 Bacillus pumilus SAFR-032 5619394 YP_001485427.1 CDS BPUM_0168 NC_009848.1 166124 166315 D hypothetical protein 166124..166315 Bacillus pumilus SAFR-032 5619395 YP_001485428.1 CDS BPUM_0169 NC_009848.1 166334 167251 D ABC transporter ATP-binding protein 166334..167251 Bacillus pumilus SAFR-032 5619396 YP_001485429.1 CDS BPUM_0170 NC_009848.1 167248 168012 D hypothetical protein 167248..168012 Bacillus pumilus SAFR-032 5619397 YP_001485430.1 CDS BPUM_0171 NC_009848.1 168129 168518 D hypothetical protein 168129..168518 Bacillus pumilus SAFR-032 5619398 YP_001485431.1 CDS BPUM_0172 NC_009848.1 168720 168917 D hypothetical protein 168720..168917 Bacillus pumilus SAFR-032 5619399 YP_001485432.1 CDS BPUM_0173 NC_009848.1 169066 170193 D hypothetical protein 169066..170193 Bacillus pumilus SAFR-032 5619400 YP_001485433.1 CDS BPUM_0174 NC_009848.1 170355 170726 D GntR family transcriptional regulator 170355..170726 Bacillus pumilus SAFR-032 5619401 YP_001485434.1 CDS BPUM_0175 NC_009848.1 170732 171607 D ABC transporter ATP-binding protein 170732..171607 Bacillus pumilus SAFR-032 5619402 YP_001485435.1 CDS BPUM_0176 NC_009848.1 171591 172196 D ABC transporter ATP-binding protein 171591..172196 Bacillus pumilus SAFR-032 5619403 YP_001485436.1 CDS BPUM_0177 NC_009848.1 172384 172599 D transcriptional regulator 172384..172599 Bacillus pumilus SAFR-032 5619404 YP_001485437.1 CDS BPUM_0178 NC_009848.1 172596 172895 D hypothetical protein 172596..172895 Bacillus pumilus SAFR-032 5619405 YP_001485438.1 CDS BPUM_0179 NC_009848.1 172951 173898 D alpha/beta fold family hydrolase 172951..173898 Bacillus pumilus SAFR-032 5619406 YP_001485439.1 CDS ybxG NC_009848.1 174128 175516 D YbdP; APC family amino acid-polyamine-organocation transporter 174128..175516 Bacillus pumilus SAFR-032 5619407 YP_001485440.1 CDS BPUM_0181 NC_009848.1 175555 176436 R glycerophosphoryl diester phosphodiesterase YbeD; glycerophosphodiester phosphodiesterase complement(175555..176436) Bacillus pumilus SAFR-032 5619408 YP_001485441.1 CDS glpT NC_009848.1 176529 177863 R major facilitator superfamily glycerol-3-phosphate:cation symporter complement(176529..177863) Bacillus pumilus SAFR-032 5619409 YP_001485442.1 CDS BPUM_0183 NC_009848.1 177891 178049 D hypothetical protein 177891..178049 Bacillus pumilus SAFR-032 5619410 YP_001485443.1 CDS BPUM_0184 NC_009848.1 178090 178860 R possible lytic transglycosylase YomI; peptidyl-prolyl isomerase complement(178090..178860) Bacillus pumilus SAFR-032 5619411 YP_001485444.1 CDS BPUM_0185 NC_009848.1 178835 178996 D hypothetical protein 178835..178996 Bacillus pumilus SAFR-032 5619412 YP_001485445.1 CDS yyaL NC_009848.1 179002 181065 R possible carboxypeptidase; thioredoxin complement(179002..181065) Bacillus pumilus SAFR-032 5619413 YP_001485446.1 CDS BPUM_0187 NC_009848.1 181488 181697 D hypothetical protein 181488..181697 Bacillus pumilus SAFR-032 5619414 YP_001485447.1 CDS BPUM_0188 NC_009848.1 181828 182334 R hypothetical protein complement(181828..182334) Bacillus pumilus SAFR-032 5619415 YP_001485448.1 CDS yrkD NC_009848.1 182508 182768 D hypothetical protein 182508..182768 Bacillus pumilus SAFR-032 5619416 YP_001485449.1 CDS yrkE NC_009848.1 182893 183375 D hypothetical protein 182893..183375 Bacillus pumilus SAFR-032 5619417 YP_001485450.1 CDS BPUM_0191 NC_009848.1 183390 183743 D rhodanese-domain-containing protein 183390..183743 Bacillus pumilus SAFR-032 5619418 YP_001485451.1 CDS yrkF NC_009848.1 183791 184351 D response regulator 183791..184351 Bacillus pumilus SAFR-032 5619419 YP_001485452.1 CDS BPUM_0193 NC_009848.1 184366 185493 D zinc (Zn) dependent hydrolase 184366..185493 Bacillus pumilus SAFR-032 5619420 YP_001485453.1 CDS yrkI NC_009848.1 185527 185757 D response regulator 185527..185757 Bacillus pumilus SAFR-032 5619421 YP_001485454.1 CDS yrkJ NC_009848.1 185816 186592 D hypothetical protein 185816..186592 Bacillus pumilus SAFR-032 5619422 YP_001485455.1 CDS BPUM_0196 NC_009848.1 186628 186804 R hypothetical protein complement(186628..186804) Bacillus pumilus SAFR-032 5619423 YP_001485456.1 CDS proS2 NC_009848.1 186939 188372 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(186939..188372) Bacillus pumilus SAFR-032 5619424 YP_001485457.1 CDS ydhL NC_009848.1 188946 190118 D major facilitator superfamily transporter 188946..190118 Bacillus pumilus SAFR-032 5619425 YP_001485458.1 CDS BPUM_0199 NC_009848.1 190159 191004 R acetyltransferase complement(190159..191004) Bacillus pumilus SAFR-032 5619426 YP_001485459.1 CDS BPUM_0200 NC_009848.1 191142 191600 D MarR family transcriptional regulator 191142..191600 Bacillus pumilus SAFR-032 5619427 YP_001485460.1 CDS BPUM_0201 NC_009848.1 191651 191956 D hypothetical protein 191651..191956 Bacillus pumilus SAFR-032 5619428 YP_001485461.1 CDS BPUM_0202 NC_009848.1 191953 192414 D hypothetical protein 191953..192414 Bacillus pumilus SAFR-032 5619429 YP_001485462.1 CDS yvgN NC_009848.1 192849 193676 D aldo/keto reductase 192849..193676 Bacillus pumilus SAFR-032 5619430 YP_001485463.1 CDS gldA NC_009848.1 193716 194801 R glycerol dehydrogenase complement(193716..194801) Bacillus pumilus SAFR-032 5619431 YP_001485464.1 CDS ybfQ NC_009848.1 194988 195956 D hypothetical protein 194988..195956 Bacillus pumilus SAFR-032 5619432 YP_001485465.1 CDS ybeC NC_009848.1 196283 197902 D APC family amino acid-polyamine-organocation transporter 196283..197902 Bacillus pumilus SAFR-032 5619433 YP_001485466.1 CDS BPUM_0207 NC_009848.1 197937 198137 R hypothetical protein complement(197937..198137) Bacillus pumilus SAFR-032 5619434 YP_001485467.1 CDS BPUM_0208 NC_009848.1 198323 199159 D transcriptional antiterminator 198323..199159 Bacillus pumilus SAFR-032 5619435 YP_001485468.1 CDS BPUM_0209 NC_009848.1 199394 201253 D protein-N(pi)-phosphohistidine--sugar phosphotransferase SytA; PTS family glucose/glucoside (glc) porter component IIBCA 199394..201253 Bacillus pumilus SAFR-032 5619436 YP_001485469.1 CDS BPUM_0210 NC_009848.1 201272 202693 D family 1 glycosyl hydrolase 201272..202693 Bacillus pumilus SAFR-032 5619437 YP_001485470.1 CDS BPUM_0211 NC_009848.1 203164 203901 D hypothetical protein 203164..203901 Bacillus pumilus SAFR-032 5619438 YP_001485471.1 CDS BPUM_0212 NC_009848.1 203909 204226 R hypothetical protein complement(203909..204226) Bacillus pumilus SAFR-032 5619439 YP_001485472.1 CDS BPUM_0213 NC_009848.1 204527 204943 D rifampin ADP-ribosyl transferase 204527..204943 Bacillus pumilus SAFR-032 5619440 YP_001485473.1 CDS BPUM_0214 NC_009848.1 205002 206921 R transcription antiterminator complement(205002..206921) Bacillus pumilus SAFR-032 5619441 YP_001485474.1 CDS ydhR NC_009848.1 206918 207802 R fructokinase complement(206918..207802) Bacillus pumilus SAFR-032 5619442 YP_001485475.1 CDS BPUM_0216 NC_009848.1 207860 210523 R alpha-mannosidase complement(207860..210523) Bacillus pumilus SAFR-032 5619443 YP_001485476.1 CDS BPUM_0217 NC_009848.1 210552 211670 R PTS family fructose/mannitol (fru) porter component IIC complement(210552..211670) Bacillus pumilus SAFR-032 5619444 YP_001485477.1 CDS BPUM_0218 NC_009848.1 211710 212036 R PTS family fructose/mannitol (fru) porter component IIB complement(211710..212036) Bacillus pumilus SAFR-032 5619445 YP_001485478.1 CDS BPUM_0219 NC_009848.1 212033 212491 R PTS family fructose/mannitol (fru) porter component IIA complement(212033..212491) Bacillus pumilus SAFR-032 5619446 YP_001485479.1 CDS wprA NC_009848.1 212733 215402 D possible subtilisin; serine protease 212733..215402 Bacillus pumilus SAFR-032 5619447 YP_001485480.1 CDS ylqB NC_009848.1 215509 215991 D hypothetical protein 215509..215991 Bacillus pumilus SAFR-032 5619448 YP_001485481.1 CDS BPUM_0222 NC_009848.1 216335 216955 R hypothetical protein complement(216335..216955) Bacillus pumilus SAFR-032 5619449 YP_001485482.1 CDS ybgF NC_009848.1 217077 218480 R APC family amino acid-polyamine-organocation transporter complement(217077..218480) Bacillus pumilus SAFR-032 5619450 YP_001485483.1 CDS mmuM NC_009848.1 218527 219465 R converts homocysteine and S-adenosyl-methionine to methionine and S-adenosyl-homocysteine or S-methyl-methionine and homocysteine to two methionines; homocysteine methyltransferase complement(218527..219465) Bacillus pumilus SAFR-032 5619451 YP_001485484.1 CDS BPUM_0226 NC_009848.1 220729 221046 D transcriptional regulator 220729..221046 Bacillus pumilus SAFR-032 5619453 YP_001485485.1 CDS BPUM_0227 NC_009848.1 221039 221626 D hypothetical protein 221039..221626 Bacillus pumilus SAFR-032 5619454 YP_001485486.1 CDS BPUM_0228 NC_009848.1 221623 221793 D hypothetical protein 221623..221793 Bacillus pumilus SAFR-032 5619455 YP_001485487.1 CDS tcaB NC_009848.1 222003 223220 R major facilitator superfamily multidrug:cation symporter complement(222003..223220) Bacillus pumilus SAFR-032 5619456 YP_001485488.1 CDS BPUM_0230 NC_009848.1 223433 223981 D acetyltransferase 223433..223981 Bacillus pumilus SAFR-032 5619457 YP_001485489.1 CDS BPUM_0231 NC_009848.1 224028 224231 R hypothetical protein complement(224028..224231) Bacillus pumilus SAFR-032 5619458 YP_001485490.1 CDS BPUM_0232 NC_009848.1 224346 224885 D hypothetical protein 224346..224885 Bacillus pumilus SAFR-032 5619459 YP_001485491.1 CDS epr NC_009848.1 224925 226556 R possible subtilisin; serine protease complement(224925..226556) Bacillus pumilus SAFR-032 5619460 YP_001485492.1 CDS BPUM_0234 NC_009848.1 226718 228205 D amidase 226718..228205 Bacillus pumilus SAFR-032 5619461 YP_001485493.1 CDS yxaF NC_009848.1 228243 228806 D transcriptional regulator 228243..228806 Bacillus pumilus SAFR-032 5619462 YP_001485494.1 CDS yxaG NC_009848.1 228887 229909 D dioxygenase 228887..229909 Bacillus pumilus SAFR-032 5619463 YP_001485495.1 CDS adhB NC_009848.1 230059 231192 D S-(hydroxymethyl)glutathione dehydrogenase 230059..231192 Bacillus pumilus SAFR-032 5619464 YP_001485496.1 CDS BPUM_0238 NC_009848.1 231215 231652 R transcriptional regulator complement(231215..231652) Bacillus pumilus SAFR-032 5619465 YP_001485497.1 CDS ydaB NC_009848.1 231914 233422 D AMP-dependent synthetase/ligase; long-chain-fatty-acid--CoA ligase 231914..233422 Bacillus pumilus SAFR-032 5619466 YP_001485498.1 CDS BPUM_0240 NC_009848.1 233489 234871 D APC family amino acid-polyamine-organocation transporter 233489..234871 Bacillus pumilus SAFR-032 5619467 YP_001485499.1 CDS BPUM_0241 NC_009848.1 234972 235337 D hypothetical protein 234972..235337 Bacillus pumilus SAFR-032 5619468 YP_001485500.1 CDS yfhM NC_009848.1 235646 236506 D S33 family non-peptidase; alpha/beta fold family hydrolase 235646..236506 Bacillus pumilus SAFR-032 5619469 YP_001485501.1 CDS glnT NC_009848.1 236546 237961 R ybgH; AGCS family alanine or glycine:sodium (Na+) or proton (H+) symporter complement(236546..237961) Bacillus pumilus SAFR-032 5619470 YP_001485502.1 CDS glsA1 NC_009848.1 237992 238972 R catalyzes the formation of glutamate from glutamine; glutaminase complement(237992..238972) Bacillus pumilus SAFR-032 5619471 YP_001485503.1 CDS ycbA NC_009848.1 239490 240776 D sensor histidine kinase 239490..240776 Bacillus pumilus SAFR-032 5619472 YP_001485504.1 CDS ycbB NC_009848.1 240781 241722 D response regulator 240781..241722 Bacillus pumilus SAFR-032 5619473 YP_001485505.1 CDS yccF NC_009848.1 241914 242999 D hypothetical protein 241914..242999 Bacillus pumilus SAFR-032 5619474 YP_001485506.1 CDS BPUM_0248 NC_009848.1 243054 244094 R lipoprotein complement(243054..244094) Bacillus pumilus SAFR-032 5619475 YP_001485507.1 CDS yccK NC_009848.1 244527 245420 D dehydrogenase 244527..245420 Bacillus pumilus SAFR-032 5619476 YP_001485508.1 CDS yccG NC_009848.1 245449 246414 R sensor histidine kinase complement(245449..246414) Bacillus pumilus SAFR-032 5619477 YP_001485509.1 CDS yccH NC_009848.1 246426 247127 R response regulator complement(246426..247127) Bacillus pumilus SAFR-032 5619478 YP_001485510.1 CDS natA NC_009848.1 247289 248029 D sodium (Na+) ABC transporter ATP binding protein 247289..248029 Bacillus pumilus SAFR-032 5619479 YP_001485511.1 CDS natB NC_009848.1 248029 249204 D sodium (Na+) ABC transporter ATP binding protein 248029..249204 Bacillus pumilus SAFR-032 5619480 YP_001485512.1 CDS BPUM_0254 NC_009848.1 249343 249681 D hypothetical protein 249343..249681 Bacillus pumilus SAFR-032 5619481 YP_001485513.1 CDS ycdA NC_009848.1 249727 250785 R spore lipoprotein YcdA complement(249727..250785) Bacillus pumilus SAFR-032 5619482 YP_001485514.1 CDS cwlJ NC_009848.1 251324 251752 D corex lytic enzyme YcbQ; spore germination cell wall hydrolase 251324..251752 Bacillus pumilus SAFR-032 5619483 YP_001485515.1 CDS ycdF NC_009848.1 251872 252651 D short chain dehydrogenase/reductase 251872..252651 Bacillus pumilus SAFR-032 5619484 YP_001485516.1 CDS BPUM_0258 NC_009848.1 252672 253712 R acyltransferase complement(252672..253712) Bacillus pumilus SAFR-032 5619485 YP_001485517.1 CDS BPUM_0259 NC_009848.1 253922 254914 R monooxygenase complement(253922..254914) Bacillus pumilus SAFR-032 5619486 YP_001485518.1 CDS yceC NC_009848.1 255327 255929 D tellurium resistance protein 255327..255929 Bacillus pumilus SAFR-032 5619487 YP_001485519.1 CDS yceD NC_009848.1 255950 256531 D TerD family tellurium resistance protein 255950..256531 Bacillus pumilus SAFR-032 5619488 YP_001485520.1 CDS yceE NC_009848.1 256573 257151 D TerD family tellurium resistance protein 256573..257151 Bacillus pumilus SAFR-032 5619489 YP_001485521.1 CDS BPUM_0263 NC_009848.1 257293 258072 D TerC family membrane protein 257293..258072 Bacillus pumilus SAFR-032 5619490 YP_001485522.1 CDS BPUM_0264 NC_009848.1 258167 259357 D citE; ATP/GTP-binding protein 258167..259357 Bacillus pumilus SAFR-032 5619491 YP_001485523.1 CDS BPUM_0265 NC_009848.1 259347 260678 D hypothetical protein 259347..260678 Bacillus pumilus SAFR-032 5619492 YP_001485524.1 CDS BPUM_0266 NC_009848.1 260671 261780 D hypothetical protein 260671..261780 Bacillus pumilus SAFR-032 5619493 YP_001485525.1 CDS BPUM_0267 NC_009848.1 261777 262592 D hypothetical protein 261777..262592 Bacillus pumilus SAFR-032 5619494 YP_001485526.1 CDS BPUM_0268 NC_009848.1 262663 264279 D tellurium resistance protein 262663..264279 Bacillus pumilus SAFR-032 5619495 YP_001485527.1 CDS yceH NC_009848.1 264294 265388 D toxic anion resistance protein 264294..265388 Bacillus pumilus SAFR-032 5619496 YP_001485528.1 CDS opuAA NC_009848.1 265789 267054 D glycine betaine ABC transporter ATP-binding protein 265789..267054 Bacillus pumilus SAFR-032 5619497 YP_001485529.1 CDS opuAB NC_009848.1 267065 267910 D glycine betaine ABC transporter membrane protein 267065..267910 Bacillus pumilus SAFR-032 5619498 YP_001485530.1 CDS opuAC NC_009848.1 267910 268791 D glycine betaine ABC transporter binding protein 267910..268791 Bacillus pumilus SAFR-032 5619499 YP_001485531.1 CDS BPUM_0273 NC_009848.1 268831 269655 D peptidase 268831..269655 Bacillus pumilus SAFR-032 5619500 YP_001485532.1 CDS BPUM_0274 NC_009848.1 269780 270502 D short chain dehydrogenase/reductase 269780..270502 Bacillus pumilus SAFR-032 5619501 YP_001485533.1 CDS amhX NC_009848.1 270748 271875 R amidohydrolase complement(270748..271875) Bacillus pumilus SAFR-032 5619502 YP_001485534.1 CDS ycgA NC_009848.1 272029 273459 D DcuC; major facilitator superfamily transporter 272029..273459 Bacillus pumilus SAFR-032 5619503 YP_001485535.1 CDS ldh NC_009848.1 273674 274621 D Converts (S)-lactate and NAD(+) to pyruvate and NADH; L-lactate dehydrogenase 273674..274621 Bacillus pumilus SAFR-032 5619504 YP_001485536.1 CDS lctP NC_009848.1 274661 276283 D LctP family L-lactate permease 274661..276283 Bacillus pumilus SAFR-032 5619505 YP_001485537.1 CDS yhjM NC_009848.1 276530 277519 R LacI family transcriptional regulator complement(276530..277519) Bacillus pumilus SAFR-032 5619506 YP_001485538.1 CDS yhjL NC_009848.1 277629 278954 D pyridoxal-phosphate-dependent aminotransferase 277629..278954 Bacillus pumilus SAFR-032 5619507 YP_001485539.1 CDS yhjK NC_009848.1 278929 279795 D HAD family hydrolase 278929..279795 Bacillus pumilus SAFR-032 5619508 YP_001485540.1 CDS yhjJ NC_009848.1 279792 280838 D GFO/IDH/MocA family dehydrogenase 279792..280838 Bacillus pumilus SAFR-032 5619509 YP_001485541.1 CDS glcP NC_009848.1 280893 282080 D spore transporter YhjI; major facilitator superfamily glucose/mannose:H(+) symporter 280893..282080 Bacillus pumilus SAFR-032 5619510 YP_001485542.1 CDS ycgF NC_009848.1 282193 282822 D possible lysine exporter protein; homoserine/threonine resistance transporter 282193..282822 Bacillus pumilus SAFR-032 5619511 YP_001485543.1 CDS BPUM_0285 NC_009848.1 282923 283324 D hypothetical protein 282923..283324 Bacillus pumilus SAFR-032 5619512 YP_001485544.1 CDS yqcI NC_009848.1 283505 284263 D hypothetical protein 283505..284263 Bacillus pumilus SAFR-032 5619513 YP_001485545.1 CDS ycgH NC_009848.1 284258 285610 R APC family amino acid-polyamine-organocation transporter complement(284258..285610) Bacillus pumilus SAFR-032 5619514 YP_001485546.1 CDS ycgI NC_009848.1 285690 286286 D hypothetical protein 285690..286286 Bacillus pumilus SAFR-032 5619515 YP_001485547.1 CDS nadE NC_009848.1 286485 287306 D catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 286485..287306 Bacillus pumilus SAFR-032 5619516 YP_001485548.1 CDS aroK NC_009848.1 287441 287998 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 287441..287998 Bacillus pumilus SAFR-032 5619517 YP_001485549.1 CDS dap1 NC_009848.1 288360 289307 D dihydrodipicolinate synthase 288360..289307 Bacillus pumilus SAFR-032 5619518 YP_001485550.1 CDS BPUM_0292 NC_009848.1 289385 290392 D transcriptional regulator 289385..290392 Bacillus pumilus SAFR-032 5619519 YP_001485551.1 CDS BPUM_0293 NC_009848.1 290513 291889 D major facilitator superfamily transporter 290513..291889 Bacillus pumilus SAFR-032 5619520 YP_001485552.1 CDS ycgK NC_009848.1 292978 293901 D LysR family transcriptional regulator 292978..293901 Bacillus pumilus SAFR-032 5619522 YP_001485553.1 CDS ykrU NC_009848.1 293947 294732 R cyanide hydratase complement(293947..294732) Bacillus pumilus SAFR-032 5619523 YP_001485554.1 CDS cah NC_009848.1 294970 295926 D acetyl xylan esterase; cephalosporin-C deacetylase 294970..295926 Bacillus pumilus SAFR-032 5619524 YP_001485555.1 CDS BPUM_0298 NC_009848.1 296165 296479 R hypothetical protein complement(296165..296479) Bacillus pumilus SAFR-032 5619525 YP_001485556.1 CDS ycgL NC_009848.1 296573 297343 D hypothetical protein 296573..297343 Bacillus pumilus SAFR-032 5619526 YP_001485557.1 CDS ycgM NC_009848.1 297504 298421 D proline dehydrogenase 297504..298421 Bacillus pumilus SAFR-032 5619527 YP_001485558.1 CDS ycgN NC_009848.1 298445 299992 D catalyzes the conversion of 1-proline-5-carboxylate dehydrogenase to L-glutamate; 1-pyrroline-5-carboxylate dehydrogenase 298445..299992 Bacillus pumilus SAFR-032 5619528 YP_001485559.1 CDS ycgP NC_009848.1 300119 301351 D possible transcriptional regulator; hypothetical protein 300119..301351 Bacillus pumilus SAFR-032 5619529 YP_001485560.1 CDS arsB NC_009848.1 301473 302771 D arsenite-antimonite efflux family transporter membrane protein ArsB 301473..302771 Bacillus pumilus SAFR-032 5619530 YP_001485561.1 CDS yckA NC_009848.1 302819 303496 R amino acid ABC transporter ATP-binding protein complement(302819..303496) Bacillus pumilus SAFR-032 5619531 YP_001485562.1 CDS yckB NC_009848.1 303509 304381 R amino acid ABC transporter ATP-binding protein complement(303509..304381) Bacillus pumilus SAFR-032 5619532 YP_001485563.1 CDS yckD NC_009848.1 304562 304891 D hypothetical protein 304562..304891 Bacillus pumilus SAFR-032 5619533 YP_001485564.1 CDS BPUM_0307 NC_009848.1 304939 305703 R beta-lactamase complement(304939..305703) Bacillus pumilus SAFR-032 5619534 YP_001485565.1 CDS lrpA NC_009848.1 305819 306235 D Lrp/AsnC family transcriptional regulator 305819..306235 Bacillus pumilus SAFR-032 5619535 YP_001485566.1 CDS yokD NC_009848.1 306265 307071 D aminoglycoside N(3')-acetyltransferase 306265..307071 Bacillus pumilus SAFR-032 5619536 YP_001485567.1 CDS nin NC_009848.1 307073 307459 R Competence protein ComJ; DNA-entry nuclease inhibitor complement(307073..307459) Bacillus pumilus SAFR-032 5619537 YP_001485568.1 CDS tlpC NC_009848.1 307580 309277 R possible Amt family ammonium or ammonia transporter; methyl-accepting chemotaxis protein complement(307580..309277) Bacillus pumilus SAFR-032 5619538 YP_001485569.1 CDS nucA NC_009848.1 309405 309833 R competence-specific nuclease ComI; nuclease complement(309405..309833) Bacillus pumilus SAFR-032 5619539 YP_001485570.1 CDS BPUM_0313 NC_009848.1 309836 310231 D hypothetical protein 309836..310231 Bacillus pumilus SAFR-032 5619540 YP_001485571.1 CDS BPUM_0314 NC_009848.1 310201 312270 D hydantoin utilization protein A 310201..312270 Bacillus pumilus SAFR-032 5619541 YP_001485572.1 CDS BPUM_0315 NC_009848.1 312260 314245 D hydantoin utilization protein B 312260..314245 Bacillus pumilus SAFR-032 5619542 YP_001485573.1 CDS BPUM_0316 NC_009848.1 314242 315327 D ABC transporter ATP-binding protein 314242..315327 Bacillus pumilus SAFR-032 5619543 YP_001485574.1 CDS BPUM_0317 NC_009848.1 315336 316427 D ABC transporter ATP-binding protein 315336..316427 Bacillus pumilus SAFR-032 5619544 YP_001485575.1 CDS BPUM_0318 NC_009848.1 316466 317296 D ABC transporter ATP-binding protein 316466..317296 Bacillus pumilus SAFR-032 5619545 YP_001485576.1 CDS BPUM_0319 NC_009848.1 318695 329407 D nonribosomal peptide synthetase subunit 318695..329407 Bacillus pumilus SAFR-032 5619546 YP_001485577.1 CDS BPUM_0320 NC_009848.1 329428 340116 D nonribosomal peptide synthetase subunit 329428..340116 Bacillus pumilus SAFR-032 5619547 YP_001485578.1 CDS BPUM_0321 NC_009848.1 340161 343994 D nonribosomal peptide synthetase subunit 340161..343994 Bacillus pumilus SAFR-032 5619548 YP_001485579.1 CDS BPUM_0322 NC_009848.1 344058 354188 D nonribosomal peptide synthetase subunit 344058..354188 Bacillus pumilus SAFR-032 5619549 YP_001485580.1 CDS BPUM_0323 NC_009848.1 354202 362397 D nonribosomal peptide synthetase subunit 354202..362397 Bacillus pumilus SAFR-032 5619550 YP_001485581.1 CDS BPUM_0324 NC_009848.1 362404 363144 D thioesterase 362404..363144 Bacillus pumilus SAFR-032 5619551 YP_001485582.1 CDS ycxC NC_009848.1 363180 364094 R DMT superfamily drug/metabolite transporter complement(363180..364094) Bacillus pumilus SAFR-032 5619552 YP_001485583.1 CDS ycxD NC_009848.1 364225 365562 D GntR family transcriptional regulator 364225..365562 Bacillus pumilus SAFR-032 5619553 YP_001485584.1 CDS sfp NC_009848.1 365559 366251 R phosphopantetheinyl transferase complement(365559..366251) Bacillus pumilus SAFR-032 5619554 YP_001485585.1 CDS BPUM_0328 NC_009848.1 366341 366931 R hypothetical protein complement(366341..366931) Bacillus pumilus SAFR-032 5619555 YP_001485586.1 CDS yczE NC_009848.1 367016 367660 R hypothetical protein complement(367016..367660) Bacillus pumilus SAFR-032 5619556 YP_001485587.1 CDS BPUM_0330 NC_009848.1 367747 367845 R hypothetical protein complement(367747..367845) Bacillus pumilus SAFR-032 5619557 YP_001485588.1 CDS yhcS1 NC_009848.1 372257 372817 D C60A subfamily peptidase 372257..372817 Bacillus pumilus SAFR-032 5619559 YP_001485589.1 CDS abrB NC_009848.1 372905 373207 D transcriptional regulator 372905..373207 Bacillus pumilus SAFR-032 5619560 YP_001485590.1 CDS BPUM_0334 NC_009848.1 373812 374198 D hypothetical protein 373812..374198 Bacillus pumilus SAFR-032 5619561 YP_001485591.1 CDS BPUM_0335 NC_009848.1 374230 375210 D hypothetical protein 374230..375210 Bacillus pumilus SAFR-032 5619562 YP_001485592.1 CDS BPUM_0336 NC_009848.1 375216 376502 D ABC transporter ATP-binding protein 375216..376502 Bacillus pumilus SAFR-032 5619563 YP_001485593.1 CDS BPUM_0337 NC_009848.1 376503 377177 D ABC transporter ATP-binding protein 376503..377177 Bacillus pumilus SAFR-032 5619564 YP_001485594.1 CDS yckI NC_009848.1 377358 378101 R L-cystine ABC transporter ATP-binding protein complement(377358..378101) Bacillus pumilus SAFR-032 5619565 YP_001485595.1 CDS yckJ NC_009848.1 378114 378806 R L-cystine ABC transporter membrane protein complement(378114..378806) Bacillus pumilus SAFR-032 5619566 YP_001485596.1 CDS yckK NC_009848.1 378793 379608 R spore transporter YckK; L-cystine ABC transporter substrate-binding protein complement(378793..379608) Bacillus pumilus SAFR-032 5619567 YP_001485597.1 CDS BPUM_0341 NC_009848.1 380004 380588 D dienelactone hydrolase 380004..380588 Bacillus pumilus SAFR-032 5619568 YP_001485598.1 CDS BPUM_0343 NC_009848.1 382377 383870 R POT family proton (H+)-dependent oligopeptide transporter complement(382377..383870) Bacillus pumilus SAFR-032 5619570 YP_001485599.1 CDS yclG NC_009848.1 384110 385918 D hypothetical protein 384110..385918 Bacillus pumilus SAFR-032 5619571 YP_001485600.1 CDS yxeK NC_009848.1 386119 387444 D nitrilotriacetate monoxygenase 386119..387444 Bacillus pumilus SAFR-032 5619572 YP_001485601.1 CDS yxeL NC_009848.1 387462 387965 D hypothetical protein 387462..387965 Bacillus pumilus SAFR-032 5619573 YP_001485602.1 CDS yxeM NC_009848.1 387988 388782 D amino acid ABC transporter ATP-binding protein 387988..388782 Bacillus pumilus SAFR-032 5619574 YP_001485603.1 CDS yxeN NC_009848.1 388807 389481 D amino acid ABC transporter ATP-binding protein 388807..389481 Bacillus pumilus SAFR-032 5619575 YP_001485604.1 CDS yxeO NC_009848.1 389494 390240 D amino acid ABC transporter ATP-binding protein 389494..390240 Bacillus pumilus SAFR-032 5619576 YP_001485605.1 CDS yxeP NC_009848.1 390274 391431 D M20D subfamily unassigned peptidase 390274..391431 Bacillus pumilus SAFR-032 5619577 YP_001485606.1 CDS yxeQ NC_009848.1 391422 392756 D MmgE/PrpD family protein 391422..392756 Bacillus pumilus SAFR-032 5619578 YP_001485607.1 CDS BPUM_0352 NC_009848.1 393076 394431 R transposase complement(393076..394431) Bacillus pumilus SAFR-032 5619579 YP_001485608.1 CDS BPUM_0353 NC_009848.1 394722 395405 D response regulator 394722..395405 Bacillus pumilus SAFR-032 5619580 YP_001485609.1 CDS BPUM_0354 NC_009848.1 395395 396822 D sensor histidine kinase 395395..396822 Bacillus pumilus SAFR-032 5619581 YP_001485610.1 CDS BPUM_0355 NC_009848.1 396851 397696 R hypothetical protein complement(396851..397696) Bacillus pumilus SAFR-032 5619582 YP_001485611.1 CDS yclM NC_009848.1 397861 399237 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; lysine and threonine sensitive; aspartate kinase complement(397861..399237) Bacillus pumilus SAFR-032 5619583 YP_001485612.1 CDS ycnB NC_009848.1 399410 400843 R major facilitator superfamily multidrug:cation symporter complement(399410..400843) Bacillus pumilus SAFR-032 5619584 YP_001485613.1 CDS ycnC NC_009848.1 400860 401759 R transcriptional regulator complement(400860..401759) Bacillus pumilus SAFR-032 5619585 YP_001485614.1 CDS BPUM_0359 NC_009848.1 401865 402239 R hypothetical protein complement(401865..402239) Bacillus pumilus SAFR-032 5619586 YP_001485615.1 CDS yczG NC_009848.1 402352 402663 D transcription regulator ArsR 402352..402663 Bacillus pumilus SAFR-032 5619587 YP_001485616.1 CDS gabR NC_009848.1 402694 404118 R GntR family transcriptional regulator complement(402694..404118) Bacillus pumilus SAFR-032 5619588 YP_001485617.1 CDS gabT NC_009848.1 404227 405543 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 404227..405543 Bacillus pumilus SAFR-032 5619589 YP_001485618.1 CDS BPUM_0363 NC_009848.1 405565 406953 D APC family amino acid-polyamine-organocation transporter 405565..406953 Bacillus pumilus SAFR-032 5619590 YP_001485619.1 CDS gabD NC_009848.1 406928 408322 D succinate-semialdehyde dehydrogenase (NAD(P)(+)) 406928..408322 Bacillus pumilus SAFR-032 5619591 YP_001485620.1 CDS BPUM_0365 NC_009848.1 408556 409152 R NAD(P)H dehydrogenase (quinone) complement(408556..409152) Bacillus pumilus SAFR-032 5619592 YP_001485621.1 CDS BPUM_0366 NC_009848.1 409168 409323 D hypothetical protein 409168..409323 Bacillus pumilus SAFR-032 5619593 YP_001485622.1 CDS ycnI NC_009848.1 409310 409924 R hypothetical protein complement(409310..409924) Bacillus pumilus SAFR-032 5619594 YP_001485623.1 CDS ycnJ NC_009848.1 409941 411575 R possible copper (Cu) resistance protein; copper (Cu) export protein complement(409941..411575) Bacillus pumilus SAFR-032 5619595 YP_001485624.1 CDS mtlA NC_009848.1 412082 413524 D PTS family mannitol-permease II, BC component 412082..413524 Bacillus pumilus SAFR-032 5619596 YP_001485625.1 CDS BPUM_0370 NC_009848.1 413621 414055 D possible PTS family mannitol porter component IIA; hypothetical protein 413621..414055 Bacillus pumilus SAFR-032 5619597 YP_001485626.1 CDS mtlD NC_009848.1 414057 415178 D mannitol-1-phosphate 5-dehydrogenase 414057..415178 Bacillus pumilus SAFR-032 5619598 YP_001485627.1 CDS BPUM_0372 NC_009848.1 415278 417026 D methyl accepting chemotaxis protein 415278..417026 Bacillus pumilus SAFR-032 5619599 YP_001485628.1 CDS BPUM_0373 NC_009848.1 417253 417645 D hypothetical protein 417253..417645 Bacillus pumilus SAFR-032 5619600 YP_001485629.1 CDS yycQ NC_009848.1 417677 417916 R hypothetical protein complement(417677..417916) Bacillus pumilus SAFR-032 5619601 YP_001485630.1 CDS BPUM_0375 NC_009848.1 417942 418235 R hypothetical protein complement(417942..418235) Bacillus pumilus SAFR-032 5619602 YP_001485631.1 CDS BPUM_0376 NC_009848.1 418260 418637 R glyoxylase complement(418260..418637) Bacillus pumilus SAFR-032 5619603 YP_001485632.1 CDS BPUM_0377 NC_009848.1 418822 419091 D hypothetical protein 418822..419091 Bacillus pumilus SAFR-032 5619604 YP_001485633.1 CDS ycsE NC_009848.1 419219 419974 D HAD superfamily hydrolase 419219..419974 Bacillus pumilus SAFR-032 5619605 YP_001485634.1 CDS ycsF NC_009848.1 420145 420903 D LamB/YcsF family protein 420145..420903 Bacillus pumilus SAFR-032 5619606 YP_001485635.1 CDS ycsG NC_009848.1 420930 422147 D manganese transporter NRAMP 420930..422147 Bacillus pumilus SAFR-032 5619607 YP_001485636.1 CDS ycsI NC_009848.1 422153 422944 D hypothetical protein 422153..422944 Bacillus pumilus SAFR-032 5619608 YP_001485637.1 CDS kipI NC_009848.1 422963 423709 D possible kinase inhibitor KipI; allophanate hydrolase subunit 1 422963..423709 Bacillus pumilus SAFR-032 5619609 YP_001485638.1 CDS kipA NC_009848.1 423706 424719 D possible transcriptional regulator KipA; allophanate hydrolase subunit 2 423706..424719 Bacillus pumilus SAFR-032 5619610 YP_001485639.1 CDS kipR NC_009848.1 424735 425496 D IclR family transcriptional regulator 424735..425496 Bacillus pumilus SAFR-032 5619611 YP_001485640.1 CDS acpD NC_009848.1 425542 426177 R FMN-dependent; requires NADH; catalyzes the cleavage of azo bond in aromatic azo compounds; azoreductase complement(425542..426177) Bacillus pumilus SAFR-032 5619612 YP_001485641.1 CDS lipC NC_009848.1 426581 427213 D YcsK; lipolytic enzyme LipC 426581..427213 Bacillus pumilus SAFR-032 5619613 YP_001485642.1 CDS BPUM_0387 NC_009848.1 427303 428382 D choloylglycine hydrolase 427303..428382 Bacillus pumilus SAFR-032 5619614 YP_001485643.1 CDS mtlR NC_009848.1 428513 430600 D MtlR transcriptional regulator 428513..430600 Bacillus pumilus SAFR-032 5619615 YP_001485644.1 CDS ydaC NC_009848.1 430618 431274 R hypothetical protein complement(430618..431274) Bacillus pumilus SAFR-032 5619616 YP_001485645.1 CDS ydaD NC_009848.1 431385 432254 D short chain dehydrogenase 431385..432254 Bacillus pumilus SAFR-032 5619617 YP_001485646.1 CDS ydaG NC_009848.1 432543 432965 D general stress protein 432543..432965 Bacillus pumilus SAFR-032 5619618 YP_001485647.1 CDS BPUM_0392 NC_009848.1 432991 433140 R hypothetical protein complement(432991..433140) Bacillus pumilus SAFR-032 5619619 YP_001485648.1 CDS BPUM_0393 NC_009848.1 433585 433767 R hypothetical protein complement(433585..433767) Bacillus pumilus SAFR-032 5619620 YP_001485649.1 CDS BPUM_0394 NC_009848.1 433781 433999 R hypothetical protein complement(433781..433999) Bacillus pumilus SAFR-032 5619621 YP_001485650.1 CDS BPUM_0395 NC_009848.1 434142 436412 D hypothetical protein 434142..436412 Bacillus pumilus SAFR-032 5619622 YP_001485651.1 CDS ydzA NC_009848.1 436591 436887 R hypothetical protein complement(436591..436887) Bacillus pumilus SAFR-032 5619623 YP_001485652.1 CDS ydhC NC_009848.1 437024 437698 R GntR family transcriptional regulator complement(437024..437698) Bacillus pumilus SAFR-032 5619624 YP_001485653.1 CDS BPUM_0398 NC_009848.1 437736 438017 D hypothetical protein 437736..438017 Bacillus pumilus SAFR-032 5619625 YP_001485654.1 CDS ycsA NC_009848.1 438114 439169 D catalyzes the formation of oxaloglycolate from tartrate; also catalyzes the formation of pyruvate from malate and glycerate from tartrate; tartrate dehydrogenase 438114..439169 Bacillus pumilus SAFR-032 5619626 YP_001485655.1 CDS topB NC_009848.1 439242 441428 D decatenates replicating daughter chromosomes; DNA topoisomerase III 439242..441428 Bacillus pumilus SAFR-032 5619627 YP_001485656.1 CDS ydaJ NC_009848.1 441626 442708 D hypothetical protein 441626..442708 Bacillus pumilus SAFR-032 5619628 YP_001485657.1 CDS ydaK NC_009848.1 442689 443540 D hypothetical protein 442689..443540 Bacillus pumilus SAFR-032 5619629 YP_001485658.1 CDS ydaL NC_009848.1 443530 445245 D hypothetical protein 443530..445245 Bacillus pumilus SAFR-032 5619630 YP_001485659.1 CDS ydaM NC_009848.1 445238 446506 D glycosyltransferase 445238..446506 Bacillus pumilus SAFR-032 5619631 YP_001485660.1 CDS ydaN NC_009848.1 446529 448598 D hypothetical protein 446529..448598 Bacillus pumilus SAFR-032 5619632 YP_001485661.1 CDS ydaO NC_009848.1 448926 450752 D APC family amino acid-polyamine-organocation transporter 448926..450752 Bacillus pumilus SAFR-032 5619633 YP_001485662.1 CDS ydaP NC_009848.1 450823 452544 D catalyzes the formation of acetyl phosphate from pyruvate; pyruvate oxidase 450823..452544 Bacillus pumilus SAFR-032 5619634 YP_001485663.1 CDS yqcG NC_009848.1 452781 454334 D hypothetical protein 452781..454334 Bacillus pumilus SAFR-032 5619635 YP_001485664.1 CDS BPUM_0409 NC_009848.1 454339 454818 D hypothetical protein 454339..454818 Bacillus pumilus SAFR-032 5619636 YP_001485665.1 CDS BPUM_0410 NC_009848.1 455086 455310 D hypothetical protein 455086..455310 Bacillus pumilus SAFR-032 5619637 YP_001485666.1 CDS BPUM_0411 NC_009848.1 455351 455614 R hypothetical protein complement(455351..455614) Bacillus pumilus SAFR-032 5619638 YP_001485667.1 CDS ydaF NC_009848.1 455713 456282 R acetyltransferase complement(455713..456282) Bacillus pumilus SAFR-032 5619639 YP_001485668.1 CDS mntH NC_009848.1 456353 457630 R manganese transport protein MntH complement(456353..457630) Bacillus pumilus SAFR-032 5619640 YP_001485669.1 CDS ydaS NC_009848.1 457853 458113 R hypothetical protein complement(457853..458113) Bacillus pumilus SAFR-032 5619641 YP_001485670.1 CDS ydbA NC_009848.1 458270 459100 D ABC transporter ATP-binding protein 458270..459100 Bacillus pumilus SAFR-032 5619642 YP_001485671.1 CDS dctB NC_009848.1 459306 460403 R TRAP-T family tripartite ATP-independent periplasmic binding protein complement(459306..460403) Bacillus pumilus SAFR-032 5619643 YP_001485672.1 CDS dctS NC_009848.1 460627 462090 D histidine kinase 460627..462090 Bacillus pumilus SAFR-032 5619644 YP_001485673.1 CDS dctR NC_009848.1 462087 462770 D possible citrate/malate metabolism transcriptional regulator YdbG; response regulator 462087..462770 Bacillus pumilus SAFR-032 5619645 YP_001485674.1 CDS dctP NC_009848.1 462895 464163 D involved in the transport of C4-dicarboxylates across the membrane; C4-dicarboxylate transporter DctA 462895..464163 Bacillus pumilus SAFR-032 5619646 YP_001485675.1 CDS ydbI NC_009848.1 464373 465395 D hypothetical protein 464373..465395 Bacillus pumilus SAFR-032 5619647 YP_001485676.1 CDS BPUM_0421 NC_009848.1 465671 466912 D DAACS family dicarboxylate/amino acid:cation symporter 465671..466912 Bacillus pumilus SAFR-032 5619648 YP_001485677.1 CDS ydbJ NC_009848.1 467049 467975 D ABC transporter ATP-binding protein 467049..467975 Bacillus pumilus SAFR-032 5619649 YP_001485678.1 CDS BPUM_0423 NC_009848.1 467953 468720 D ABC transporter ATP-binding protein 467953..468720 Bacillus pumilus SAFR-032 5619650 YP_001485679.1 CDS ydbL NC_009848.1 468838 469173 D hypothetical protein 468838..469173 Bacillus pumilus SAFR-032 5619651 YP_001485680.1 CDS ydbN NC_009848.1 469273 469422 R hypothetical protein complement(469273..469422) Bacillus pumilus SAFR-032 5619652 YP_001485681.1 CDS ydbP NC_009848.1 469769 470089 R thioredoxin family protein complement(469769..470089) Bacillus pumilus SAFR-032 5619653 YP_001485682.1 CDS ddl NC_009848.1 470273 471355 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanyl-alanine synthetase A 470273..471355 Bacillus pumilus SAFR-032 5619654 YP_001485683.1 CDS murF NC_009848.1 471437 472801 D UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 471437..472801 Bacillus pumilus SAFR-032 5619655 YP_001485684.1 CDS BPUM_0429 NC_009848.1 472829 473521 D carboxylesterase 472829..473521 Bacillus pumilus SAFR-032 5619656 YP_001485685.1 CDS BPUM_0430 NC_009848.1 473649 473987 D hypothetical protein 473649..473987 Bacillus pumilus SAFR-032 5619657 YP_001485686.1 CDS ydbR NC_009848.1 474102 475643 D sporulation-related DEAD-box helicase; ATP-dependent RNA helicase 474102..475643 Bacillus pumilus SAFR-032 5619658 YP_001485687.1 CDS ydbS NC_009848.1 475754 476233 D hypothetical protein 475754..476233 Bacillus pumilus SAFR-032 5619659 YP_001485688.1 CDS ydbT NC_009848.1 476223 477722 D hypothetical protein 476223..477722 Bacillus pumilus SAFR-032 5619660 YP_001485689.1 CDS ydcA NC_009848.1 477779 478384 R serine peptidase complement(477779..478384) Bacillus pumilus SAFR-032 5619661 YP_001485690.1 CDS acpS NC_009848.1 478479 478844 D Catalyzes the formation of holo-ACP, which mediates the essential transfer of acyl fatty acid intermediates during the biosynthesis of fatty acids and lipids; 4'-phosphopantetheinyl transferase 478479..478844 Bacillus pumilus SAFR-032 5619662 YP_001485691.1 CDS ydcC NC_009848.1 479014 480021 D sporulation protein YdcC 479014..480021 Bacillus pumilus SAFR-032 5619663 YP_001485692.1 CDS alr NC_009848.1 480363 481541 D dal; alanine racemase 480363..481541 Bacillus pumilus SAFR-032 5619664 YP_001485693.1 CDS ydcD NC_009848.1 481838 482119 D possible transcriptional regulator; hypothetical protein 481838..482119 Bacillus pumilus SAFR-032 5619665 YP_001485694.1 CDS ydcE NC_009848.1 482124 482474 D PemK family growth inhibitor 482124..482474 Bacillus pumilus SAFR-032 5619666 YP_001485695.1 CDS rsbR NC_009848.1 482589 483419 D anti-sigma factor antagonist YcxR; anti-anti-sigma-B regulator 482589..483419 Bacillus pumilus SAFR-032 5619667 YP_001485696.1 CDS rsbS NC_009848.1 483424 483792 D RsbT antagonist 483424..483792 Bacillus pumilus SAFR-032 5619668 YP_001485697.1 CDS rsbT NC_009848.1 483795 484196 D switch protein, anti-sigma-B factor; non-specific serine/threonine protein kinase 483795..484196 Bacillus pumilus SAFR-032 5619669 YP_001485698.1 CDS rsbU NC_009848.1 484207 485214 D sigma factor SigB regulation protein; phosphoserine phosphatase 484207..485214 Bacillus pumilus SAFR-032 5619670 YP_001485699.1 CDS rsbV NC_009848.1 485274 485603 D anti-sigma-B factor antagonist; anti-anti-sigma factor (RsbW antagonist) 485274..485603 Bacillus pumilus SAFR-032 5619671 YP_001485700.1 CDS rsbW NC_009848.1 485600 486088 D binds to sigma-B preventing the formation of an RNA polymerase holoenzyme; serine-protein kinase RsbW 485600..486088 Bacillus pumilus SAFR-032 5619672 YP_001485701.1 CDS sigB NC_009848.1 486054 486842 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma B is not essential for sporulation; rather it is required for maximal expression of ctc and csbA which are transcribed in the early stationary phase under conditions inimical to sporulation; induced by heat shock, salt stress, oxidative stress, glucose limitation, oxygen limitation and entry into stationary phase; RNA polymerase sigma factor SigB 486054..486842 Bacillus pumilus SAFR-032 5619673 YP_001485702.1 CDS rsbX NC_009848.1 486842 487441 D sigma B-dependent serine phosphatase; phosphoserine phosphatase 486842..487441 Bacillus pumilus SAFR-032 5619674 YP_001485703.1 CDS ydcI NC_009848.1 487518 489677 D RNA binding transcriptional accessory protein 487518..489677 Bacillus pumilus SAFR-032 5619675 YP_001485704.1 CDS BPUM_0449 NC_009848.1 489698 489832 R hypothetical protein complement(489698..489832) Bacillus pumilus SAFR-032 5619676 YP_001485705.1 CDS ydcK NC_009848.1 489932 490405 D hypothetical protein 489932..490405 Bacillus pumilus SAFR-032 5619677 YP_001485706.1 CDS acoA NC_009848.1 490599 491576 D acetoin dehydrogenase E1 alpha subunit; dihydrolipoyl dehydrogenase E1 alpha subunit 490599..491576 Bacillus pumilus SAFR-032 5619678 YP_001485707.1 CDS acoB NC_009848.1 491597 492634 D acetoin dehydrogenase E1 beta subunit; dihydrolipoyl dehydrogenase E1 beta subunit 491597..492634 Bacillus pumilus SAFR-032 5619679 YP_001485708.1 CDS acoC NC_009848.1 492652 493791 D acetoin dehydrogenase E2 subunit; branched-chain alpha-keto acid dehydrogenase subunit E2 492652..493791 Bacillus pumilus SAFR-032 5619680 YP_001485709.1 CDS acoL NC_009848.1 493810 495189 D E3 component of acetoin cleaving system; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 493810..495189 Bacillus pumilus SAFR-032 5619681 YP_001485710.1 CDS acoR NC_009848.1 495298 497145 D transcriptional regulator 495298..497145 Bacillus pumilus SAFR-032 5619682 YP_001485711.1 CDS BPUM_0456 NC_009848.1 498006 498167 D hypothetical protein 498006..498167 Bacillus pumilus SAFR-032 5619690 YP_001485712.1 CDS BPUM_0457 NC_009848.1 498191 498985 D S33 family serine peptidase; alpha/beta fold family hydrolase 498191..498985 Bacillus pumilus SAFR-032 5619691 YP_001485713.1 CDS grpB NC_009848.1 499198 499704 D hypothetical protein 499198..499704 Bacillus pumilus SAFR-032 5619692 YP_001485714.1 CDS cspC NC_009848.1 499990 500193 D cold-shock protein 499990..500193 Bacillus pumilus SAFR-032 5619693 YP_001485715.1 CDS ydeB NC_009848.1 500484 500945 R transcription regulator CarD complement(500484..500945) Bacillus pumilus SAFR-032 5619694 YP_001485716.1 CDS adhA NC_009848.1 501186 502235 R NADP-dependent alcohol dehydrogenase complement(501186..502235) Bacillus pumilus SAFR-032 5619695 YP_001485717.1 CDS yraB NC_009848.1 502459 502860 D MerR family transcriptional regulator 502459..502860 Bacillus pumilus SAFR-032 5619696 YP_001485718.1 CDS bglS NC_009848.1 502903 503634 R licheninase complement(502903..503634) Bacillus pumilus SAFR-032 5619697 YP_001485719.1 CDS BPUM_0464 NC_009848.1 503940 504518 D TetR family transcriptional regulator 503940..504518 Bacillus pumilus SAFR-032 5619698 YP_001485720.1 CDS lmrB NC_009848.1 504591 506030 D lincomycin resistance protein; major facilitator superfamily transporter 504591..506030 Bacillus pumilus SAFR-032 5619699 YP_001485721.1 CDS BPUM_0466 NC_009848.1 506225 507118 D S9C family serine non-peptidase homolog; carboxylesterase A 506225..507118 Bacillus pumilus SAFR-032 5619700 YP_001485722.1 CDS BPUM_0467 NC_009848.1 507260 507625 D hypothetical protein 507260..507625 Bacillus pumilus SAFR-032 5619701 YP_001485723.1 CDS dltE NC_009848.1 507730 508491 D short-chain dehydrogenase/reductase SDR 507730..508491 Bacillus pumilus SAFR-032 5619702 YP_001485724.1 CDS BPUM_0469 NC_009848.1 508641 509009 R hypothetical protein complement(508641..509009) Bacillus pumilus SAFR-032 5619703 YP_001485725.1 CDS yccC NC_009848.1 509287 510435 D asparaginase 509287..510435 Bacillus pumilus SAFR-032 5619704 YP_001485726.1 CDS BPUM_0471 NC_009848.1 510469 511368 R peptidase complement(510469..511368) Bacillus pumilus SAFR-032 5619705 YP_001485727.1 CDS BPUM_0472 NC_009848.1 511425 511871 R MarR family transcriptional regulator complement(511425..511871) Bacillus pumilus SAFR-032 5619706 YP_001485728.1 CDS BPUM_0473 NC_009848.1 511957 512106 D hypothetical protein 511957..512106 Bacillus pumilus SAFR-032 5619707 YP_001485729.1 CDS BPUM_0474 NC_009848.1 512081 512686 D TetR family transcriptional regulator 512081..512686 Bacillus pumilus SAFR-032 5619708 YP_001485730.1 CDS blt NC_009848.1 512718 513914 D multidrug-efflux transporter AcfA Bmr2 Bmt; major facilitator superfamily transporter 512718..513914 Bacillus pumilus SAFR-032 5619709 YP_001485731.1 CDS BPUM_0476 NC_009848.1 514149 514565 R hypothetical protein complement(514149..514565) Bacillus pumilus SAFR-032 5619710 YP_001485732.1 CDS BPUM_0477 NC_009848.1 514562 515002 R hypothetical protein complement(514562..515002) Bacillus pumilus SAFR-032 5619711 YP_001485733.1 CDS ydfB NC_009848.1 515144 515950 D hypothetical protein 515144..515950 Bacillus pumilus SAFR-032 5619712 YP_001485734.1 CDS BPUM_0479 NC_009848.1 515945 516415 R GNAT family acetyltransferase complement(515945..516415) Bacillus pumilus SAFR-032 5619713 YP_001485735.1 CDS BPUM_0480 NC_009848.1 516468 516737 D hypothetical protein 516468..516737 Bacillus pumilus SAFR-032 5619714 YP_001485736.1 CDS BPUM_0481 NC_009848.1 516734 517273 R acetyltransferase complement(516734..517273) Bacillus pumilus SAFR-032 5619715 YP_001485737.1 CDS BPUM_0482 NC_009848.1 517270 517665 R dioxygenase complement(517270..517665) Bacillus pumilus SAFR-032 5619716 YP_001485738.1 CDS BPUM_0483 NC_009848.1 517734 518357 R histone acetyltransferase HPA2 and related acetyltransferases; histone acetyltransferase HPA2-like protein complement(517734..518357) Bacillus pumilus SAFR-032 5619717 YP_001485739.1 CDS BPUM_0484 NC_009848.1 518507 519058 D transcriptional regulator 518507..519058 Bacillus pumilus SAFR-032 5619718 YP_001485740.1 CDS BPUM_0485 NC_009848.1 519148 519690 D dihydrofolate reductase family protein 519148..519690 Bacillus pumilus SAFR-032 5619719 YP_001485741.1 CDS BPUM_0486 NC_009848.1 519799 520272 D transcriptional regulator 519799..520272 Bacillus pumilus SAFR-032 5619720 YP_001485742.1 CDS BPUM_0487 NC_009848.1 520223 520879 D nitroreductase family protein 520223..520879 Bacillus pumilus SAFR-032 5619721 YP_001485743.1 CDS BPUM_0488 NC_009848.1 520897 521949 D hypothetical protein 520897..521949 Bacillus pumilus SAFR-032 5619722 YP_001485744.1 CDS BPUM_0489 NC_009848.1 521997 522203 R hypothetical protein complement(521997..522203) Bacillus pumilus SAFR-032 5619723 YP_001485745.1 CDS BPUM_0490 NC_009848.1 522253 522591 D hypothetical protein 522253..522591 Bacillus pumilus SAFR-032 5619724 YP_001485746.1 CDS BPUM_0491 NC_009848.1 522633 523187 R transcriptional regulator complement(522633..523187) Bacillus pumilus SAFR-032 5619725 YP_001485747.1 CDS BPUM_0492 NC_009848.1 523299 523886 D homoserine/threonine resistance transporter 523299..523886 Bacillus pumilus SAFR-032 5619726 YP_001485748.1 CDS BPUM_0493 NC_009848.1 523891 524442 R acetyltransferase complement(523891..524442) Bacillus pumilus SAFR-032 5619727 YP_001485749.1 CDS BPUM_0494 NC_009848.1 524565 525554 R LysR family transcriptional regulator complement(524565..525554) Bacillus pumilus SAFR-032 5619728 YP_001485750.1 CDS BPUM_0495 NC_009848.1 525608 526396 D aldo/keto dehydrogenase 525608..526396 Bacillus pumilus SAFR-032 5619729 YP_001485751.1 CDS BPUM_0496 NC_009848.1 526559 526744 D hypothetical protein 526559..526744 Bacillus pumilus SAFR-032 5619730 YP_001485752.1 CDS BPUM_0497 NC_009848.1 526893 527555 D O-methyltransferase 526893..527555 Bacillus pumilus SAFR-032 5619731 YP_001485753.1 CDS BPUM_0498 NC_009848.1 527592 527912 R hypothetical protein complement(527592..527912) Bacillus pumilus SAFR-032 5619732 YP_001485754.1 CDS azlC NC_009848.1 527909 528634 R LIV-E family branched chain amino acid exporter complement(527909..528634) Bacillus pumilus SAFR-032 5619733 YP_001485755.1 CDS BPUM_0500 NC_009848.1 528929 529804 D DMT family permease 528929..529804 Bacillus pumilus SAFR-032 5619734 YP_001485756.1 CDS BPUM_0501 NC_009848.1 530048 531298 R DAACS family dicarboxylate/amino acid:cation symporter complement(530048..531298) Bacillus pumilus SAFR-032 5619735 YP_001485757.1 CDS BPUM_0502 NC_009848.1 531363 531533 D hypothetical protein 531363..531533 Bacillus pumilus SAFR-032 5619736 YP_001485758.1 CDS yaaC NC_009848.1 537040 538008 R hypothetical protein complement(537040..538008) Bacillus pumilus SAFR-032 5619744 YP_001485759.1 CDS guaB NC_009848.1 538130 539596 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase 538130..539596 Bacillus pumilus SAFR-032 5619745 YP_001485760.1 CDS dacA NC_009848.1 539757 541082 D penicillin-binding protein 5; serine-type D-Ala-D-Ala carboxypeptidase 539757..541082 Bacillus pumilus SAFR-032 5619746 YP_001485761.1 CDS BPUM_0506 NC_009848.1 541123 542601 R GntR family transcriptional regulator complement(541123..542601) Bacillus pumilus SAFR-032 5619747 YP_001485762.1 CDS yaaD NC_009848.1 542847 543731 D with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 542847..543731 Bacillus pumilus SAFR-032 5619748 YP_001485763.1 CDS yaaE NC_009848.1 543752 544342 D with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT 543752..544342 Bacillus pumilus SAFR-032 5619749 YP_001485764.1 CDS serS NC_009848.1 544662 545936 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 544662..545936 Bacillus pumilus SAFR-032 5619750 YP_001485765.1 CDS BPUM_0510 NC_009848.1 546039 546869 D chemotaxis sensory transducer protein 546039..546869 Bacillus pumilus SAFR-032 5619751 YP_001485766.1 CDS dck NC_009848.1 547179 547838 R deoxynucleoside kinase complement(547179..547838) Bacillus pumilus SAFR-032 5619753 YP_001485767.1 CDS dgk NC_009848.1 547835 548458 R yaaG; deoxyguanosine kinase complement(547835..548458) Bacillus pumilus SAFR-032 5619754 YP_001485768.1 CDS yaaH NC_009848.1 548538 549839 R spore cortex-lytic enzyme, L-alanine-stimulated germination protein YaaH; spore germination protein complement(548538..549839) Bacillus pumilus SAFR-032 5619755 YP_001485769.1 CDS yaaI NC_009848.1 549885 550439 R cysteine hydrolase family protein complement(549885..550439) Bacillus pumilus SAFR-032 5619756 YP_001485770.1 CDS yaaJ NC_009848.1 550519 550995 D possible cytidine/deoxycytidylate deaminase; nucleoside deaminase 550519..550995 Bacillus pumilus SAFR-032 5619757 YP_001485771.1 CDS dnaX NC_009848.1 551666 553378 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 551666..553378 Bacillus pumilus SAFR-032 5619759 YP_001485772.1 CDS yaaK NC_009848.1 553384 553728 D hypothetical protein 553384..553728 Bacillus pumilus SAFR-032 5619760 YP_001485773.1 CDS recR NC_009848.1 553744 554340 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 553744..554340 Bacillus pumilus SAFR-032 5619761 YP_001485774.1 CDS yaaL NC_009848.1 554359 554583 D hypothetical protein 554359..554583 Bacillus pumilus SAFR-032 5619762 YP_001485775.1 CDS bofA NC_009848.1 554650 554913 D sigma-K factor-processing regulatory protein BofA 554650..554913 Bacillus pumilus SAFR-032 5619763 YP_001485776.1 CDS thiL NC_009848.1 560530 561507 D catalyzes the formation of thiamine diphosphate from thiamine phosphate ant ATP; thiamine monophosphate kinase 560530..561507 Bacillus pumilus SAFR-032 5619769 YP_001485777.1 CDS ydiB NC_009848.1 561530 561997 D ATP-binding protein 561530..561997 Bacillus pumilus SAFR-032 5619770 YP_001485778.1 CDS ydiC NC_009848.1 561978 562667 D M22 family peptidase 561978..562667 Bacillus pumilus SAFR-032 5619771 YP_001485779.1 CDS rimI NC_009848.1 562651 563121 D YdiD; ribosomal-protein-alanine N-acetyltransferase 562651..563121 Bacillus pumilus SAFR-032 5619772 YP_001485780.1 CDS gcp NC_009848.1 563114 564142 D in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease 563114..564142 Bacillus pumilus SAFR-032 5619773 YP_001485781.1 CDS ydiF NC_009848.1 564414 566336 R ABC transporter ATP-binding protein complement(564414..566336) Bacillus pumilus SAFR-032 5619774 YP_001485782.1 CDS moaC NC_009848.1 566476 566967 D MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis; molybdenum cofactor biosynthesis protein MoaC 566476..566967 Bacillus pumilus SAFR-032 5619775 YP_001485783.1 CDS rex NC_009848.1 566983 567636 D modulates transcription in response to the NADH/NAD(+) redox state; redox-sensing transcriptional repressor Rex 566983..567636 Bacillus pumilus SAFR-032 5619776 YP_001485784.1 CDS tatA NC_009848.1 567664 567843 D TatA; similar to TatE that is found in some proteobacteria; part of system that translocates proteins with a conserved twin arginine motif across the inner membrane; capable of translocating folded substrates typically those with bound cofactors; similar to a protein import system in thylakoid membranes; twin arginine translocase protein A 567664..567843 Bacillus pumilus SAFR-032 5619777 YP_001485785.1 CDS tatCY NC_009848.1 567850 568614 D TAT family twin arginine targeting transporter 567850..568614 Bacillus pumilus SAFR-032 5619778 YP_001485786.1 CDS BPUM_0531 NC_009848.1 568653 569279 R hydrolase complement(568653..569279) Bacillus pumilus SAFR-032 5619779 YP_001485787.1 CDS ydiK NC_009848.1 569336 569530 R hypothetical protein complement(569336..569530) Bacillus pumilus SAFR-032 5619780 YP_001485788.1 CDS ydiL NC_009848.1 569527 570261 R hypothetical protein complement(569527..570261) Bacillus pumilus SAFR-032 5619781 YP_001485789.1 CDS groES NC_009848.1 570492 570776 D 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES 570492..570776 Bacillus pumilus SAFR-032 5619782 YP_001485790.1 CDS groEL NC_009848.1 570832 572466 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 570832..572466 Bacillus pumilus SAFR-032 5619783 YP_001485791.1 CDS BPUM_0537 NC_009848.1 573469 573936 R hypothetical protein complement(573469..573936) Bacillus pumilus SAFR-032 5619785 YP_001485792.1 CDS BPUM_0538 NC_009848.1 574061 574735 R hypothetical protein complement(574061..574735) Bacillus pumilus SAFR-032 5619786 YP_001485793.1 CDS ydjM NC_009848.1 574946 575314 D hypothetical protein 574946..575314 Bacillus pumilus SAFR-032 5619787 YP_001485794.1 CDS ydjN NC_009848.1 575388 576437 D hypothetical protein 575388..576437 Bacillus pumilus SAFR-032 5619788 YP_001485795.1 CDS BPUM_0541 NC_009848.1 576653 577027 R 4-carboxymuconolactone decarboxylase complement(576653..577027) Bacillus pumilus SAFR-032 5619789 YP_001485796.1 CDS cotA NC_009848.1 577315 578844 R Pig; outer spore coat protein A complement(577315..578844) Bacillus pumilus SAFR-032 5619790 YP_001485797.1 CDS gabP NC_009848.1 578944 580350 R gamma-aminobutyrate (GABA) permease; APC family amino acid-polyamine-organocation transporter complement(578944..580350) Bacillus pumilus SAFR-032 5619791 YP_001485798.1 CDS yeaB NC_009848.1 580815 581714 D cation efflux protein; hypothetical protein 580815..581714 Bacillus pumilus SAFR-032 5619792 YP_001485799.1 CDS yeaC NC_009848.1 581816 582778 D methanol dehydrogenase regulatory protein 581816..582778 Bacillus pumilus SAFR-032 5619793 YP_001485800.1 CDS yeaD NC_009848.1 582775 583965 D hypothetical protein 582775..583965 Bacillus pumilus SAFR-032 5619794 YP_001485801.1 CDS yebA NC_009848.1 583975 586179 D possible transglutaminase, cysteine protease YebA; hypothetical protein 583975..586179 Bacillus pumilus SAFR-032 5619795 YP_001485802.1 CDS guaA NC_009848.1 586366 587907 D contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 586366..587907 Bacillus pumilus SAFR-032 5619796 YP_001485803.1 CDS yopK NC_009848.1 588295 589413 D spore transcriptional regulator YopK 588295..589413 Bacillus pumilus SAFR-032 5619797 YP_001485804.1 CDS BPUM_0550 NC_009848.1 589733 590119 R transcriptional regulator complement(589733..590119) Bacillus pumilus SAFR-032 5619798 YP_001485805.1 CDS BPUM_0552 NC_009848.1 590560 590802 D hypothetical protein 590560..590802 Bacillus pumilus SAFR-032 5619800 YP_001485806.1 CDS BPUM_0553 NC_009848.1 592152 593117 D hypothetical protein 592152..593117 Bacillus pumilus SAFR-032 5619801 YP_001485807.1 CDS ydcQ NC_009848.1 593151 594485 D FtsK/SpoIIIE family protein 593151..594485 Bacillus pumilus SAFR-032 5619802 YP_001485808.1 CDS ydcR NC_009848.1 594559 595659 D transcriptional regulator 594559..595659 Bacillus pumilus SAFR-032 5619803 YP_001485809.1 CDS BPUM_0556 NC_009848.1 595915 596172 D hypothetical protein 595915..596172 Bacillus pumilus SAFR-032 5619804 YP_001485810.1 CDS yddA NC_009848.1 596179 596457 D hypothetical protein 596179..596457 Bacillus pumilus SAFR-032 5619805 YP_001485811.1 CDS BPUM_0558 NC_009848.1 596536 597186 D hypothetical protein 596536..597186 Bacillus pumilus SAFR-032 5619806 YP_001485812.1 CDS BPUM_0559 NC_009848.1 597247 599790 D hypothetical protein 597247..599790 Bacillus pumilus SAFR-032 5619807 YP_001485813.1 CDS BPUM_0560 NC_009848.1 600179 601003 R hypothetical protein complement(600179..601003) Bacillus pumilus SAFR-032 5619808 YP_001485814.1 CDS ydiP NC_009848.1 601232 602017 D DNA (cytosine-5-)-methyltransferase 601232..602017 Bacillus pumilus SAFR-032 5619809 YP_001485815.1 CDS BPUM_0562 NC_009848.1 602089 602385 D hypothetical protein 602089..602385 Bacillus pumilus SAFR-032 5619810 YP_001485816.1 CDS BPUM_0563 NC_009848.1 602375 602656 D hypothetical protein 602375..602656 Bacillus pumilus SAFR-032 5619811 YP_001485817.1 CDS BPUM_0564 NC_009848.1 602685 603077 D hypothetical protein 602685..603077 Bacillus pumilus SAFR-032 5619812 YP_001485818.1 CDS BPUM_0565 NC_009848.1 603074 604303 D type II/IV secretion system protein 603074..604303 Bacillus pumilus SAFR-032 5619813 YP_001485819.1 CDS BPUM_0566 NC_009848.1 604290 605102 D hypothetical protein 604290..605102 Bacillus pumilus SAFR-032 5619814 YP_001485820.1 CDS BPUM_0567 NC_009848.1 605107 605868 D hypothetical protein 605107..605868 Bacillus pumilus SAFR-032 5619815 YP_001485821.1 CDS BPUM_0568 NC_009848.1 605875 606234 D hypothetical protein 605875..606234 Bacillus pumilus SAFR-032 5619816 YP_001485822.1 CDS BPUM_0569 NC_009848.1 606407 606574 D hypothetical protein 606407..606574 Bacillus pumilus SAFR-032 5619817 YP_001485823.1 CDS BPUM_0570 NC_009848.1 606833 607081 D hypothetical protein 606833..607081 Bacillus pumilus SAFR-032 5619818 YP_001485824.1 CDS yddB NC_009848.1 607062 608057 D hypothetical protein 607062..608057 Bacillus pumilus SAFR-032 5619819 YP_001485825.1 CDS yddC NC_009848.1 608069 608329 D hypothetical protein 608069..608329 Bacillus pumilus SAFR-032 5619820 YP_001485826.1 CDS yddD NC_009848.1 608341 608808 D hypothetical protein 608341..608808 Bacillus pumilus SAFR-032 5619821 YP_001485827.1 CDS yddE NC_009848.1 608786 611242 D hypothetical protein 608786..611242 Bacillus pumilus SAFR-032 5619822 YP_001485828.1 CDS yddG NC_009848.1 612013 614394 D hypothetical protein 612013..614394 Bacillus pumilus SAFR-032 5619823 YP_001485829.1 CDS yddH NC_009848.1 614391 615368 D possible C40 family dipeptidyl peptidase VI; C40 family peptidase 614391..615368 Bacillus pumilus SAFR-032 5619824 YP_001485830.1 CDS yddI NC_009848.1 615378 615869 D hypothetical protein 615378..615869 Bacillus pumilus SAFR-032 5619825 YP_001485831.1 CDS BPUM_0578 NC_009848.1 615897 616106 D hypothetical protein 615897..616106 Bacillus pumilus SAFR-032 5619826 YP_001485832.1 CDS int NC_009848.1 616312 617589 D YdcL; integrase 616312..617589 Bacillus pumilus SAFR-032 5619828 YP_001485833.1 CDS BPUM_0581 NC_009848.1 617863 618921 R AraC family transcription regulator complement(617863..618921) Bacillus pumilus SAFR-032 5619829 YP_001485834.1 CDS BPUM_0582 NC_009848.1 618922 620583 R 2-isopropylmalate synthase complement(618922..620583) Bacillus pumilus SAFR-032 5619830 YP_001485835.1 CDS ybfP NC_009848.1 621147 622034 R AraC family transcription regulator complement(621147..622034) Bacillus pumilus SAFR-032 5619831 YP_001485836.1 CDS ydeE NC_009848.1 622244 623116 D transcriptional regulator 622244..623116 Bacillus pumilus SAFR-032 5619832 YP_001485837.1 CDS BPUM_0585 NC_009848.1 623130 623705 D acetyltransferase 623130..623705 Bacillus pumilus SAFR-032 5619833 YP_001485838.1 CDS BPUM_0586 NC_009848.1 623842 624408 R acetyltransferase complement(623842..624408) Bacillus pumilus SAFR-032 5619834 YP_001485839.1 CDS BPUM_0587 NC_009848.1 624413 624598 R hypothetical protein complement(624413..624598) Bacillus pumilus SAFR-032 5619835 YP_001485840.1 CDS BPUM_0588 NC_009848.1 624778 625323 D ECF family DNA-directed RNA polymerase sigma factor 624778..625323 Bacillus pumilus SAFR-032 5619836 YP_001485841.1 CDS BPUM_0589 NC_009848.1 625292 626740 D hypothetical protein 625292..626740 Bacillus pumilus SAFR-032 5619837 YP_001485842.1 CDS BPUM_0590 NC_009848.1 626759 627946 R major facilitator superfamily transporter complement(626759..627946) Bacillus pumilus SAFR-032 5619838 YP_001485843.1 CDS lysR NC_009848.1 628047 628943 D LysR family transcriptional regulator 628047..628943 Bacillus pumilus SAFR-032 5619839 YP_001485844.1 CDS pbuG NC_009848.1 629305 630630 D NCS2 family nucleobase:cation symporter-2 629305..630630 Bacillus pumilus SAFR-032 5619840 YP_001485845.1 CDS yebC NC_009848.1 631012 631812 D hypothetical protein 631012..631812 Bacillus pumilus SAFR-032 5619841 YP_001485846.1 CDS yebE NC_009848.1 631947 632573 D hypothetical protein 631947..632573 Bacillus pumilus SAFR-032 5619842 YP_001485847.1 CDS yebG NC_009848.1 632570 632770 D hypothetical protein 632570..632770 Bacillus pumilus SAFR-032 5619843 YP_001485848.1 CDS purE NC_009848.1 633121 633609 D phosphoribosylaminoimidazole carboxylase catalytic subunit 633121..633609 Bacillus pumilus SAFR-032 5619844 YP_001485849.1 CDS purK NC_009848.1 633602 634744 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 633602..634744 Bacillus pumilus SAFR-032 5619845 YP_001485850.1 CDS purB NC_009848.1 634741 636036 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 634741..636036 Bacillus pumilus SAFR-032 5619846 YP_001485851.1 CDS purC NC_009848.1 636109 636831 D catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase 636109..636831 Bacillus pumilus SAFR-032 5619847 YP_001485852.1 CDS purS NC_009848.1 636824 637078 D With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway; phosphoribosylformylglycinamidine synthase subunit PurS 636824..637078 Bacillus pumilus SAFR-032 5619848 YP_001485853.1 CDS purQ NC_009848.1 637075 637758 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 637075..637758 Bacillus pumilus SAFR-032 5619849 YP_001485854.1 CDS purL NC_009848.1 637742 639973 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 637742..639973 Bacillus pumilus SAFR-032 5619850 YP_001485855.1 CDS purF NC_009848.1 639949 641379 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 639949..641379 Bacillus pumilus SAFR-032 5619851 YP_001485856.1 CDS purM NC_009848.1 641475 642515 D catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase 641475..642515 Bacillus pumilus SAFR-032 5619852 YP_001485857.1 CDS purN NC_009848.1 642512 643081 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 642512..643081 Bacillus pumilus SAFR-032 5619853 YP_001485858.1 CDS purH NC_009848.1 643097 644635 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 643097..644635 Bacillus pumilus SAFR-032 5619854 YP_001485859.1 CDS purD NC_009848.1 644648 645922 D catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase 644648..645922 Bacillus pumilus SAFR-032 5619855 YP_001485860.1 CDS BPUM_0608 NC_009848.1 646194 649241 D helicase 646194..649241 Bacillus pumilus SAFR-032 5619856 YP_001485861.1 CDS BPUM_0609 NC_009848.1 649392 649586 D hypothetical protein 649392..649586 Bacillus pumilus SAFR-032 5619857 YP_001485862.1 CDS BPUM_0610 NC_009848.1 649608 650453 D acetyltransferase 649608..650453 Bacillus pumilus SAFR-032 5619858 YP_001485863.1 CDS BPUM_0611 NC_009848.1 650448 652106 R possible purine catabolism related protein YcgP; hypothetical protein complement(650448..652106) Bacillus pumilus SAFR-032 5619859 YP_001485864.1 CDS yodT NC_009848.1 652297 653661 D BioA; hypothetical protein 652297..653661 Bacillus pumilus SAFR-032 5619860 YP_001485865.1 CDS atoD NC_009848.1 653674 654360 D acetate CoA-transferase subunit alpha 653674..654360 Bacillus pumilus SAFR-032 5619861 YP_001485866.1 CDS yodR NC_009848.1 654336 655001 D 3-ketoacid CoA transferase; acetate CoA-transferase subunit beta 654336..655001 Bacillus pumilus SAFR-032 5619862 YP_001485867.1 CDS yodQ NC_009848.1 655016 656287 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 655016..656287 Bacillus pumilus SAFR-032 5619863 YP_001485868.1 CDS BPUM_0616 NC_009848.1 656372 656593 R hypothetical protein complement(656372..656593) Bacillus pumilus SAFR-032 5619864 YP_001485869.1 CDS yerA NC_009848.1 656718 658460 D M38 family peptidase; adenine deaminase 656718..658460 Bacillus pumilus SAFR-032 5619865 YP_001485870.1 CDS BPUM_0618 NC_009848.1 658728 658913 R hypothetical protein complement(658728..658913) Bacillus pumilus SAFR-032 5619866 YP_001485871.1 CDS yerC NC_009848.1 659010 659324 D sporulation protein YerC 659010..659324 Bacillus pumilus SAFR-032 5619867 YP_001485872.1 CDS BPUM_0620 NC_009848.1 659384 659605 D hypothetical protein 659384..659605 Bacillus pumilus SAFR-032 5619868 YP_001485873.1 CDS yerD NC_009848.1 659623 661203 R glutamate synthase complement(659623..661203) Bacillus pumilus SAFR-032 5619869 YP_001485874.1 CDS ybyB NC_009848.1 661343 661573 D hypothetical protein 661343..661573 Bacillus pumilus SAFR-032 5619870 YP_001485875.1 CDS BPUM_0623 NC_009848.1 661554 661967 R YuzE; hypothetical protein complement(661554..661967) Bacillus pumilus SAFR-032 5619871 YP_001485876.1 CDS pcrB NC_009848.1 662123 662932 D PcrB-like protein; GGGP synthase; member of prenyltransferases that transfer isoprenoid groups to nonisoprenoid acceptors; functions in form GGGP from glycerol-1-phosphate (G-1-P) and geranylgeranyl pyrophosphate (GGPP); important in lipid metabolism and especially important as the ether linkages in archaea are different than those in bacteria; GGGP synthase lies at the branch point for membrane lipid biosynthesis; cytosolic; T acidophilum protein acts as a homodimer while M thermoautotrophicum protein has been reported to function as a pentamer; geranylgeranylglyceryl phosphate synthase 662123..662932 Bacillus pumilus SAFR-032 5619872 YP_001485877.1 CDS pcrA NC_009848.1 662990 665212 D ATP-dependent DNA helicase 662990..665212 Bacillus pumilus SAFR-032 5619873 YP_001485878.1 CDS ligA NC_009848.1 665257 667263 D this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 665257..667263 Bacillus pumilus SAFR-032 5619874 YP_001485879.1 CDS yerH NC_009848.1 667279 668466 D hypothetical protein 667279..668466 Bacillus pumilus SAFR-032 5619875 YP_001485880.1 CDS yfmI NC_009848.1 668567 669799 D major facilitator superfamily macrolide:cation transporter 668567..669799 Bacillus pumilus SAFR-032 5619876 YP_001485881.1 CDS BPUM_0629 NC_009848.1 669948 674360 D nonribosomal peptide synthetase subunit 669948..674360 Bacillus pumilus SAFR-032 5619877 YP_001485882.1 CDS pbpX NC_009848.1 674357 675898 D beta-lactamase 674357..675898 Bacillus pumilus SAFR-032 5619878 YP_001485883.1 CDS bacT NC_009848.1 676838 677548 D GrsT; thioesterase 676838..677548 Bacillus pumilus SAFR-032 5619879 YP_001485884.1 CDS BPUM_0632 NC_009848.1 677545 678402 D YqiM; 3-hydroxybutyryl-CoA dehydrogenase 677545..678402 Bacillus pumilus SAFR-032 5619880 YP_001485885.1 CDS BPUM_0633 NC_009848.1 678417 679472 D FkbH; methoxymalonyl-ACP biosynthesis protein 678417..679472 Bacillus pumilus SAFR-032 5619881 YP_001485886.1 CDS BPUM_0634 NC_009848.1 679500 679769 D possible acyl carrier protein; hypothetical protein 679500..679769 Bacillus pumilus SAFR-032 5619882 YP_001485887.1 CDS BPUM_0635 NC_009848.1 679756 680898 D acyl-CoA dehydrogenase (NADP(+)) 679756..680898 Bacillus pumilus SAFR-032 5619883 YP_001485888.1 CDS BPUM_0636 NC_009848.1 690025 692694 D nonribosomal peptide synthetase subunit 690025..692694 Bacillus pumilus SAFR-032 5619884 YP_001485889.1 CDS BPUM_0637 NC_009848.1 692687 697192 D polyketide synthase subunit 692687..697192 Bacillus pumilus SAFR-032 5619885 YP_001485890.1 CDS BPUM_0638 NC_009848.1 697193 704443 D polyketide synthase subunit 697193..704443 Bacillus pumilus SAFR-032 5619886 YP_001485891.1 CDS BPUM_0639 NC_009848.1 704436 710846 D polyketide synthase subunit 704436..710846 Bacillus pumilus SAFR-032 5619887 YP_001485892.1 CDS yerI NC_009848.1 710839 711846 D homoserine kinase type II 710839..711846 Bacillus pumilus SAFR-032 5619888 YP_001485893.1 CDS phoB NC_009848.1 711888 713294 R alkaline phosphatase complement(711888..713294) Bacillus pumilus SAFR-032 5619889 YP_001485894.1 CDS sapB NC_009848.1 713408 714100 R membrane protein SapB complement(713408..714100) Bacillus pumilus SAFR-032 5619890 YP_001485895.1 CDS opuE NC_009848.1 714264 715745 R SSS family proline/sodium (Na+) symporter OpuE complement(714264..715745) Bacillus pumilus SAFR-032 5619891 YP_001485896.1 CDS gatC NC_009848.1 716144 716434 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; some Mycoplasma proteins contain an N-terminal fusion to an unknown domain; aspartyl/glutamyl-tRNA amidotransferase subunit C 716144..716434 Bacillus pumilus SAFR-032 5619892 YP_001485897.1 CDS gatA NC_009848.1 716449 717906 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 716449..717906 Bacillus pumilus SAFR-032 5619893 YP_001485898.1 CDS gatB NC_009848.1 717920 719350 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 717920..719350 Bacillus pumilus SAFR-032 5619894 YP_001485899.1 CDS yerO NC_009848.1 719533 720378 R transcriptional regulator complement(719533..720378) Bacillus pumilus SAFR-032 5619895 YP_001485900.1 CDS swrC NC_009848.1 720510 723734 D resistance-nodulation-cell division acriflavin:proton (H+) antiporter 720510..723734 Bacillus pumilus SAFR-032 5619896 YP_001485901.1 CDS BPUM_0649 NC_009848.1 723766 724719 R purine nucleosidase complement(723766..724719) Bacillus pumilus SAFR-032 5619897 YP_001485902.1 CDS yerQ NC_009848.1 724901 725809 D similar to YegS from E. coli; putative lipid kinase 724901..725809 Bacillus pumilus SAFR-032 5619898 YP_001485903.1 CDS yefA NC_009848.1 725867 727264 D TrmA family RNA methyltransferase 725867..727264 Bacillus pumilus SAFR-032 5619899 YP_001485904.1 CDS BPUM_0652 NC_009848.1 727814 729304 D ATP-binding protein 727814..729304 Bacillus pumilus SAFR-032 5619900 YP_001485905.1 CDS BPUM_0653 NC_009848.1 729297 732107 D endonuclease 729297..732107 Bacillus pumilus SAFR-032 5619901 YP_001485906.1 CDS BPUM_0654 NC_009848.1 732089 733117 D hypothetical protein 732089..733117 Bacillus pumilus SAFR-032 5619902 YP_001485907.1 CDS BPUM_0655 NC_009848.1 733114 734883 D hypothetical protein 733114..734883 Bacillus pumilus SAFR-032 5619903 YP_001485908.1 CDS BPUM_0656 NC_009848.1 734880 736526 R DNA (cytosine-5-)-methyltransferase complement(734880..736526) Bacillus pumilus SAFR-032 5619904 YP_001485909.1 CDS yfjN NC_009848.1 736808 737782 D tRNA-dihydrouridine synthase 736808..737782 Bacillus pumilus SAFR-032 5619905 YP_001485910.1 CDS BPUM_0658 NC_009848.1 737890 738342 D hypothetical protein 737890..738342 Bacillus pumilus SAFR-032 5619906 YP_001485911.1 CDS glvR NC_009848.1 738474 739238 R transcriptional regulator complement(738474..739238) Bacillus pumilus SAFR-032 5619907 YP_001485912.1 CDS malP NC_009848.1 739387 740967 D PTS family porter component IIBC 739387..740967 Bacillus pumilus SAFR-032 5619908 YP_001485913.1 CDS glvA NC_009848.1 740994 742322 D maltose-6'-phosphate glucosidase 740994..742322 Bacillus pumilus SAFR-032 5619909 YP_001485914.1 CDS BPUM_0662 NC_009848.1 742435 742806 R hypothetical protein complement(742435..742806) Bacillus pumilus SAFR-032 5619910 YP_001485915.1 CDS BPUM_0663 NC_009848.1 742990 743427 D transcriptional regulator 742990..743427 Bacillus pumilus SAFR-032 5619911 YP_001485916.1 CDS BPUM_0664 NC_009848.1 743493 744407 D thioredoxin-disulfide reductase 743493..744407 Bacillus pumilus SAFR-032 5619912 YP_001485917.1 CDS BPUM_0665 NC_009848.1 744417 744617 R hypothetical protein complement(744417..744617) Bacillus pumilus SAFR-032 5619913 YP_001485918.1 CDS BPUM_0666 NC_009848.1 744731 745378 D hypothetical protein 744731..745378 Bacillus pumilus SAFR-032 5619914 YP_001485919.1 CDS licH1 NC_009848.1 745412 746740 R 6-phospho-beta-glucosidase complement(745412..746740) Bacillus pumilus SAFR-032 5619915 YP_001485920.1 CDS BPUM_0668 NC_009848.1 746940 747671 D transcriptional regulator 746940..747671 Bacillus pumilus SAFR-032 5619916 YP_001485921.1 CDS BPUM_0671 NC_009848.1 749039 749518 D prolyl-tRNA synthetase 749039..749518 Bacillus pumilus SAFR-032 5619918 YP_001485922.1 CDS cisL NC_009848.1 749549 750502 R LysR family transcriptional regulator complement(749549..750502) Bacillus pumilus SAFR-032 5619919 YP_001485923.1 CDS BPUM_0673 NC_009848.1 750561 751760 D major facilitator superfamily transporter 750561..751760 Bacillus pumilus SAFR-032 5619920 YP_001485924.1 CDS yetN NC_009848.1 751825 752904 R hypothetical protein complement(751825..752904) Bacillus pumilus SAFR-032 5619921 YP_001485925.1 CDS BPUM_0675 NC_009848.1 753103 753252 R hypothetical protein complement(753103..753252) Bacillus pumilus SAFR-032 5619922 YP_001485926.1 CDS yfnH NC_009848.1 753608 754372 D glucose-1-phosphate cytidylyltransferase 753608..754372 Bacillus pumilus SAFR-032 5619923 YP_001485927.1 CDS yfnG NC_009848.1 754344 755348 D NAD-dependent epimerase/dehydratase 754344..755348 Bacillus pumilus SAFR-032 5619924 YP_001485928.1 CDS yfnF NC_009848.1 755361 756272 D glycosyltransferase 755361..756272 Bacillus pumilus SAFR-032 5619925 YP_001485929.1 CDS yfnE NC_009848.1 756269 757459 D glycosyltransferase 756269..757459 Bacillus pumilus SAFR-032 5619926 YP_001485930.1 CDS yfnD NC_009848.1 757460 758389 D glycosyltransferase 757460..758389 Bacillus pumilus SAFR-032 5619927 YP_001485931.1 CDS BPUM_0681 NC_009848.1 758425 759663 R major facilitator superfamily fosmidomycin:cation antiporter complement(758425..759663) Bacillus pumilus SAFR-032 5619928 YP_001485932.1 CDS BPUM_0682 NC_009848.1 759663 759818 D hypothetical protein 759663..759818 Bacillus pumilus SAFR-032 5619929 YP_001485933.1 CDS BPUM_0683 NC_009848.1 759997 762036 R penicillin-binding protein complement(759997..762036) Bacillus pumilus SAFR-032 5619930 YP_001485934.1 CDS BPUM_0684 NC_009848.1 762298 763713 D DASS family divalent anion:sodium (Na+) symporter 762298..763713 Bacillus pumilus SAFR-032 5619931 YP_001485935.1 CDS yocL NC_009848.1 763719 764072 R hypothetical protein complement(763719..764072) Bacillus pumilus SAFR-032 5619932 YP_001485936.1 CDS yocM NC_009848.1 764364 764843 R heat shock protein complement(764364..764843) Bacillus pumilus SAFR-032 5619933 YP_001485937.1 CDS yozN NC_009848.1 764909 765166 D hypothetical protein 764909..765166 Bacillus pumilus SAFR-032 5619934 YP_001485938.1 CDS yocN NC_009848.1 765173 765406 D hypothetical protein 765173..765406 Bacillus pumilus SAFR-032 5619935 YP_001485939.1 CDS yfnA NC_009848.1 765443 766834 R APC family amino acid-polyamine-organocation transporter complement(765443..766834) Bacillus pumilus SAFR-032 5619936 YP_001485940.1 CDS BPUM_0690 NC_009848.1 767015 768088 R glycosyltransferase complement(767015..768088) Bacillus pumilus SAFR-032 5619937 YP_001485941.1 CDS yfmR NC_009848.1 768222 770105 D ABC transporter ATP-binding protein 768222..770105 Bacillus pumilus SAFR-032 5619938 YP_001485942.1 CDS yfmP NC_009848.1 770266 770691 D transcriptional regulator 770266..770691 Bacillus pumilus SAFR-032 5619939 YP_001485943.1 CDS yfmO NC_009848.1 770748 771938 D major facilitator superfamily multidrug:cation symporter 770748..771938 Bacillus pumilus SAFR-032 5619940 YP_001485944.1 CDS yfmM NC_009848.1 771984 773537 R ABC transporter ATP-binding protein complement(771984..773537) Bacillus pumilus SAFR-032 5619941 YP_001485945.1 CDS yfmL NC_009848.1 773690 774832 D ATP-dependent RNA helicase 773690..774832 Bacillus pumilus SAFR-032 5619942 YP_001485946.1 CDS yfmJ NC_009848.1 775066 776070 R NADP-dependent dehydrogenase complement(775066..776070) Bacillus pumilus SAFR-032 5619943 YP_001485947.1 CDS yfmB NC_009848.1 776179 776568 R hypothetical protein complement(776179..776568) Bacillus pumilus SAFR-032 5619944 YP_001485948.1 CDS BPUM_0698 NC_009848.1 776790 777137 D general stress protein 776790..777137 Bacillus pumilus SAFR-032 5619945 YP_001485949.1 CDS BPUM_0699 NC_009848.1 778107 778763 D hypothetical protein 778107..778763 Bacillus pumilus SAFR-032 5619946 YP_001485950.1 CDS BPUM_0700 NC_009848.1 779044 779769 D GTP cyclohydrolase II 779044..779769 Bacillus pumilus SAFR-032 5619947 YP_001485951.1 CDS BPUM_0702 NC_009848.1 780611 782368 D WD-40 repeat-containing protein 780611..782368 Bacillus pumilus SAFR-032 5619949 YP_001485952.1 CDS ribD2 NC_009848.1 782645 783730 D bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase 782645..783730 Bacillus pumilus SAFR-032 5619950 YP_001485953.1 CDS BPUM_0706 NC_009848.1 786048 786719 D hypothetical protein 786048..786719 Bacillus pumilus SAFR-032 5619952 YP_001485954.1 CDS citS NC_009848.1 786826 788460 D sensor histidine kinase 786826..788460 Bacillus pumilus SAFR-032 5619953 YP_001485955.1 CDS citT NC_009848.1 788461 789162 D response regulator 788461..789162 Bacillus pumilus SAFR-032 5619954 YP_001485956.1 CDS yflP NC_009848.1 789166 790146 D TTT family tricarboxylate membrane protein 789166..790146 Bacillus pumilus SAFR-032 5619955 YP_001485957.1 CDS citM NC_009848.1 790338 791636 D CitMHS family citrate-magnesium (Mg2+):citrate symporter 790338..791636 Bacillus pumilus SAFR-032 5619956 YP_001485958.1 CDS BPUM_0711 NC_009848.1 791817 793448 D M14 family carboxypeptidase 791817..793448 Bacillus pumilus SAFR-032 5619957 YP_001485959.1 CDS padC NC_009848.1 793521 794006 R phenolic acid decarboxylase complement(793521..794006) Bacillus pumilus SAFR-032 5619958 YP_001485960.1 CDS padR NC_009848.1 794119 794676 D transcriptional regulator 794119..794676 Bacillus pumilus SAFR-032 5619959 YP_001485961.1 CDS nos NC_009848.1 794781 795887 D nitric oxide synthase 794781..795887 Bacillus pumilus SAFR-032 5619960 YP_001485962.1 CDS BPUM_0715 NC_009848.1 795974 796282 R acylphosphate phosphohydrolase; acylphosphatase complement(795974..796282) Bacillus pumilus SAFR-032 5619961 YP_001485963.1 CDS yflK NC_009848.1 796361 797020 D possible molybdenum cofactor sulphurase; hypothetical protein 796361..797020 Bacillus pumilus SAFR-032 5619962 YP_001485964.1 CDS BPUM_0717 NC_009848.1 797063 797200 R hypothetical protein complement(797063..797200) Bacillus pumilus SAFR-032 5619963 YP_001485965.1 CDS yflI NC_009848.1 797335 797496 R hypothetical protein complement(797335..797496) Bacillus pumilus SAFR-032 5619964 YP_001485966.1 CDS yflG NC_009848.1 797620 798369 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential; methionine aminopeptidase complement(797620..798369) Bacillus pumilus SAFR-032 5619965 YP_001485967.1 CDS nagP NC_009848.1 798551 799921 D PTS family glucose/glucoside (glc) porter component IIBC 798551..799921 Bacillus pumilus SAFR-032 5619966 YP_001485968.1 CDS BPUM_0721 NC_009848.1 799940 800698 R hypothetical protein complement(799940..800698) Bacillus pumilus SAFR-032 5619967 YP_001485969.1 CDS BPUM_0722 NC_009848.1 800893 801396 D hypothetical protein 800893..801396 Bacillus pumilus SAFR-032 5619968 YP_001485970.1 CDS yjgB NC_009848.1 801441 802028 R hypothetical protein complement(801441..802028) Bacillus pumilus SAFR-032 5619969 YP_001485971.1 CDS yflE NC_009848.1 802129 804108 R sulfatase complement(802129..804108) Bacillus pumilus SAFR-032 5619970 YP_001485972.1 CDS BPUM_0725 NC_009848.1 804688 806346 D diaminobutyrate decarboxylase 804688..806346 Bacillus pumilus SAFR-032 5619971 YP_001485973.1 CDS BPUM_0726 NC_009848.1 806378 808102 D sensor histidine kinase 806378..808102 Bacillus pumilus SAFR-032 5619972 YP_001485974.1 CDS BPUM_0727 NC_009848.1 808345 808731 D hypothetical protein 808345..808731 Bacillus pumilus SAFR-032 5619973 YP_001485975.1 CDS treP NC_009848.1 808895 810331 D PTS family trehalose porter component IIBC 808895..810331 Bacillus pumilus SAFR-032 5619974 YP_001485976.1 CDS treA NC_009848.1 810347 812047 D alpha,alpha-phosphotrehalase 810347..812047 Bacillus pumilus SAFR-032 5619975 YP_001485977.1 CDS treR NC_009848.1 812067 812795 D trehalose operon transcriptional repressor; GntR family transcriptional regulator 812067..812795 Bacillus pumilus SAFR-032 5619976 YP_001485978.1 CDS yfkN NC_009848.1 813339 817565 R in Escherichia coli this is a periplasmic enzyme while in gram positive organisms it may be anchored at the cell surface; this protein appears to consist of a dimer fusion; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein complement(813339..817565) Bacillus pumilus SAFR-032 5619978 YP_001485979.1 CDS yfkM NC_009848.1 817883 818401 D C56 family peptidase 817883..818401 Bacillus pumilus SAFR-032 5619979 YP_001485980.1 CDS yfkK NC_009848.1 818499 818714 R hypothetical protein complement(818499..818714) Bacillus pumilus SAFR-032 5619980 YP_001485981.1 CDS yflA NC_009848.1 818792 820147 R AGCS family alanine or glycine:sodium (Na+) or proton (H+) symporter complement(818792..820147) Bacillus pumilus SAFR-032 5619981 YP_001485982.1 CDS yfkJ NC_009848.1 820322 820792 D protein-tyrosine-phosphatase 820322..820792 Bacillus pumilus SAFR-032 5619982 YP_001485983.1 CDS yfkI NC_009848.1 820813 821145 D hypothetical protein 820813..821145 Bacillus pumilus SAFR-032 5619983 YP_001485984.1 CDS yfkH NC_009848.1 821164 821982 D hypothetical protein 821164..821982 Bacillus pumilus SAFR-032 5619984 YP_001485985.1 CDS yfkF NC_009848.1 822192 823373 R major facilitator superfamily transporter complement(822192..823373) Bacillus pumilus SAFR-032 5619985 YP_001485986.1 CDS BPUM_0740 NC_009848.1 823449 823826 D possible stress response protein; hypothetical protein 823449..823826 Bacillus pumilus SAFR-032 5619986 YP_001485987.1 CDS yfkE NC_009848.1 823891 824955 D Ca2+ antiporter 823891..824955 Bacillus pumilus SAFR-032 5619987 YP_001485988.1 CDS yfkD NC_009848.1 825023 825805 D sporulation protein YfkD 825023..825805 Bacillus pumilus SAFR-032 5619988 YP_001485989.1 CDS yeeI NC_009848.1 826318 827037 R hypothetical protein complement(826318..827037) Bacillus pumilus SAFR-032 5619989 YP_001485990.1 CDS BPUM_0744 NC_009848.1 827169 827570 R hypothetical protein complement(827169..827570) Bacillus pumilus SAFR-032 5619990 YP_001485991.1 CDS BPUM_0745 NC_009848.1 827673 828509 R MscS family small conductance mechanosenstive ion channel protein complement(827673..828509) Bacillus pumilus SAFR-032 5619991 YP_001485992.1 CDS yfkA NC_009848.1 828517 829638 R thioredoxin complement(828517..829638) Bacillus pumilus SAFR-032 5619992 YP_001485993.1 CDS yfjT NC_009848.1 829785 829976 D hypothetical protein 829785..829976 Bacillus pumilus SAFR-032 5619993 YP_001485994.1 CDS yfjS NC_009848.1 830079 830870 D poylsaccharide deacetylase 830079..830870 Bacillus pumilus SAFR-032 5619994 YP_001485995.1 CDS BPUM_0749 NC_009848.1 830906 831397 R hypothetical protein complement(830906..831397) Bacillus pumilus SAFR-032 5619995 YP_001485996.1 CDS corA NC_009848.1 831430 832389 R MIT family metal ion transporter CorA complement(831430..832389) Bacillus pumilus SAFR-032 5619996 YP_001485997.1 CDS BPUM_0751 NC_009848.1 832523 833035 R hypothetical protein complement(832523..833035) Bacillus pumilus SAFR-032 5619997 YP_001485998.1 CDS alkA NC_009848.1 833336 834337 D yfjP; DNA-3-methyladenine glycosylase II 833336..834337 Bacillus pumilus SAFR-032 5619998 YP_001485999.1 CDS trmA NC_009848.1 834436 835821 D yfjO; tRNA (uracil-5-)-methyltransferase 834436..835821 Bacillus pumilus SAFR-032 5619999 YP_001486000.1 CDS BPUM_0754 NC_009848.1 835953 836537 D TetR family transcriptional regulator 835953..836537 Bacillus pumilus SAFR-032 5620000 YP_001486001.1 CDS BPUM_0755 NC_009848.1 836595 838481 D bifunctional nucleotide sugar epimerase/hydrolase 836595..838481 Bacillus pumilus SAFR-032 5620001 YP_001486002.1 CDS BPUM_0756 NC_009848.1 838554 838985 D hypothetical protein 838554..838985 Bacillus pumilus SAFR-032 5620002 YP_001486003.1 CDS BPUM_0757 NC_009848.1 838975 839487 D hypothetical protein 838975..839487 Bacillus pumilus SAFR-032 5620003 YP_001486004.1 CDS BPUM_0758 NC_009848.1 839627 840454 D transcriptional regulator 839627..840454 Bacillus pumilus SAFR-032 5620004 YP_001486005.1 CDS ybcL NC_009848.1 840481 841668 D possible chloramphenicol resistance protein; major facilitator superfamily transporter 840481..841668 Bacillus pumilus SAFR-032 5620005 YP_001486006.1 CDS BPUM_0760 NC_009848.1 841924 843108 D hypothetical protein 841924..843108 Bacillus pumilus SAFR-032 5620006 YP_001486007.1 CDS thrZ NC_009848.1 843710 845641 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); Bacillus have two copies of the threonyl-tRNA synthetase, threonine starvation induces both proteins; threonyl-tRNA synthetase 843710..845641 Bacillus pumilus SAFR-032 5620007 YP_001486008.1 CDS BPUM_0762 NC_009848.1 845680 845835 D hypothetical protein 845680..845835 Bacillus pumilus SAFR-032 5620008 YP_001486009.1 CDS BPUM_0763 NC_009848.1 845817 846383 D hypothetical protein 845817..846383 Bacillus pumilus SAFR-032 5620009 YP_001486010.1 CDS BPUM_0764 NC_009848.1 846410 847687 D hypothetical protein 846410..847687 Bacillus pumilus SAFR-032 5620010 YP_001486011.1 CDS BPUM_0765 NC_009848.1 848010 848282 D hypothetical protein 848010..848282 Bacillus pumilus SAFR-032 5620011 YP_001486012.1 CDS BPUM_0766 NC_009848.1 848332 849840 R transcriptional regulator complement(848332..849840) Bacillus pumilus SAFR-032 5620012 YP_001486013.1 CDS BPUM_0767 NC_009848.1 850553 856696 D collagen adhesion protein 850553..856696 Bacillus pumilus SAFR-032 5620013 YP_001486014.1 CDS BPUM_0769 NC_009848.1 856718 857320 D possible sortase; C60A subfamily peptidase 856718..857320 Bacillus pumilus SAFR-032 5620015 YP_001486015.1 CDS BPUM_0770 NC_009848.1 857313 857639 D hypothetical protein 857313..857639 Bacillus pumilus SAFR-032 5620016 YP_001486016.1 CDS BPUM_0771 NC_009848.1 857693 858007 R DMT superfamily drug/metabolite transporter complement(857693..858007) Bacillus pumilus SAFR-032 5620017 YP_001486017.1 CDS BPUM_0772 NC_009848.1 858008 858352 R DMT superfamily drug/metabolite transporter complement(858008..858352) Bacillus pumilus SAFR-032 5620018 YP_001486018.1 CDS BPUM_0773 NC_009848.1 858433 859158 R transcriptional regulator complement(858433..859158) Bacillus pumilus SAFR-032 5620019 YP_001486019.1 CDS vanZ NC_009848.1 859185 859733 D teicoplanin resistance protein VanZ 859185..859733 Bacillus pumilus SAFR-032 5620020 YP_001486020.1 CDS yfjM NC_009848.1 859730 860194 D hypothetical protein 859730..860194 Bacillus pumilus SAFR-032 5620021 YP_001486021.1 CDS yesY NC_009848.1 860345 860974 D rhamnogalacturan acetylesterase 860345..860974 Bacillus pumilus SAFR-032 5620022 YP_001486022.1 CDS ycgT NC_009848.1 861128 862168 D thioredoxin-disulfide reductase 861128..862168 Bacillus pumilus SAFR-032 5620023 YP_001486023.1 CDS BPUM_0779 NC_009848.1 862576 862809 R hypothetical protein complement(862576..862809) Bacillus pumilus SAFR-032 5620025 YP_001486024.1 CDS BPUM_0780 NC_009848.1 862909 863475 D DNA-directed RNA polymerase sigma subunit 862909..863475 Bacillus pumilus SAFR-032 5620026 YP_001486025.1 CDS BPUM_0781 NC_009848.1 863472 864218 D hypothetical protein 863472..864218 Bacillus pumilus SAFR-032 5620027 YP_001486026.1 CDS BPUM_0782 NC_009848.1 864414 864989 D hypothetical protein 864414..864989 Bacillus pumilus SAFR-032 5620028 YP_001486027.1 CDS BPUM_0783 NC_009848.1 865078 866103 D NADPH:quinone reductase 865078..866103 Bacillus pumilus SAFR-032 5620029 YP_001486028.1 CDS yfiT NC_009848.1 866100 866627 D metal-dependent hydrolase 866100..866627 Bacillus pumilus SAFR-032 5620030 YP_001486029.1 CDS BPUM_0785 NC_009848.1 866640 866930 D hypothetical protein 866640..866930 Bacillus pumilus SAFR-032 5620031 YP_001486030.1 CDS yfiV NC_009848.1 866953 867432 R transcriptional regulator complement(866953..867432) Bacillus pumilus SAFR-032 5620032 YP_001486031.1 CDS BPUM_0787 NC_009848.1 867601 870171 D hypothetical protein 867601..870171 Bacillus pumilus SAFR-032 5620033 YP_001486032.1 CDS BPUM_0788 NC_009848.1 870263 870811 D hypothetical protein 870263..870811 Bacillus pumilus SAFR-032 5620034 YP_001486033.1 CDS BPUM_0789 NC_009848.1 871148 871615 D hypothetical protein 871148..871615 Bacillus pumilus SAFR-032 5620035 YP_001486034.1 CDS BPUM_0790 NC_009848.1 871652 872908 R transcriptional activator complement(871652..872908) Bacillus pumilus SAFR-032 5620036 YP_001486035.1 CDS yfhC NC_009848.1 873180 873767 D nitroreductase family protein 873180..873767 Bacillus pumilus SAFR-032 5620037 YP_001486036.1 CDS yfhD NC_009848.1 874013 874168 R sporulation protein YfhD complement(874013..874168) Bacillus pumilus SAFR-032 5620038 YP_001486037.1 CDS BPUM_0793 NC_009848.1 874123 874281 D hypothetical protein 874123..874281 Bacillus pumilus SAFR-032 5620039 YP_001486038.1 CDS yfhF NC_009848.1 874393 875289 R nucleoside diphosphate sugar epimerase complement(874393..875289) Bacillus pumilus SAFR-032 5620040 YP_001486039.1 CDS recX NC_009848.1 875384 876175 D binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX 875384..876175 Bacillus pumilus SAFR-032 5620041 YP_001486040.1 CDS yfhH NC_009848.1 876179 876493 D hypothetical protein 876179..876493 Bacillus pumilus SAFR-032 5620042 YP_001486041.1 CDS BPUM_0797 NC_009848.1 876516 876689 R hypothetical protein complement(876516..876689) Bacillus pumilus SAFR-032 5620043 YP_001486042.1 CDS sspK NC_009848.1 876715 876864 R SASP K; found in the forespore compartment; acid-soluble spore protein K complement(876715..876864) Bacillus pumilus SAFR-032 5620044 YP_001486043.1 CDS yfhJ NC_009848.1 876981 877253 D hypothetical protein 876981..877253 Bacillus pumilus SAFR-032 5620045 YP_001486044.1 CDS csbB NC_009848.1 877544 878527 D possible glycosyltransferase; stress response protein 877544..878527 Bacillus pumilus SAFR-032 5620046 YP_001486045.1 CDS yfhO NC_009848.1 878615 881209 D hypothetical protein 878615..881209 Bacillus pumilus SAFR-032 5620047 YP_001486046.1 CDS BPUM_0802 NC_009848.1 881232 882365 R monooxygenase complement(881232..882365) Bacillus pumilus SAFR-032 5620048 YP_001486047.1 CDS BPUM_0803 NC_009848.1 882587 883039 D hypothetical protein 882587..883039 Bacillus pumilus SAFR-032 5620049 YP_001486048.1 CDS yvrL NC_009848.1 883044 883466 R hypothetical protein complement(883044..883466) Bacillus pumilus SAFR-032 5620050 YP_001486049.1 CDS oxdC NC_009848.1 883535 884698 R oxalate decarboxylase complement(883535..884698) Bacillus pumilus SAFR-032 5620051 YP_001486050.1 CDS BPUM_0806 NC_009848.1 884793 884957 R hypothetical protein complement(884793..884957) Bacillus pumilus SAFR-032 5620052 YP_001486051.1 CDS yvrI NC_009848.1 885124 885726 D DNA-directed RNA polymerase sigma subunit FliA 885124..885726 Bacillus pumilus SAFR-032 5620053 YP_001486052.1 CDS yvrH NC_009848.1 885680 885895 D hypothetical protein 885680..885895 Bacillus pumilus SAFR-032 5620054 YP_001486053.1 CDS yfhP NC_009848.1 885923 886903 R membrane bound metal dependent hydrolase complement(885923..886903) Bacillus pumilus SAFR-032 5620055 YP_001486054.1 CDS mutY NC_009848.1 887095 888195 D YfhQ; adenine glycosylase 887095..888195 Bacillus pumilus SAFR-032 5620056 YP_001486055.1 CDS yfhS NC_009848.1 888182 888406 R hypothetical protein complement(888182..888406) Bacillus pumilus SAFR-032 5620057 YP_001486056.1 CDS fabL NC_009848.1 888488 889240 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 888488..889240 Bacillus pumilus SAFR-032 5620058 YP_001486057.1 CDS sspE NC_009848.1 889301 889465 D small acid-soluble spore protein E 889301..889465 Bacillus pumilus SAFR-032 5620059 YP_001486058.1 CDS BPUM_0814 NC_009848.1 889585 890940 R transposase complement(889585..890940) Bacillus pumilus SAFR-032 5620060 YP_001486059.1 CDS BPUM_0815 NC_009848.1 891080 891328 R hypothetical protein complement(891080..891328) Bacillus pumilus SAFR-032 5620061 YP_001486060.1 CDS BPUM_0816 NC_009848.1 891378 891638 D hypothetical protein 891378..891638 Bacillus pumilus SAFR-032 5620062 YP_001486061.1 CDS BPUM_0817 NC_009848.1 891786 892316 D hypothetical protein 891786..892316 Bacillus pumilus SAFR-032 5620063 YP_001486062.1 CDS BPUM_0818 NC_009848.1 892411 894153 D ABC transporter ATP-binding protein 892411..894153 Bacillus pumilus SAFR-032 5620064 YP_001486063.1 CDS appDC NC_009848.1 894266 895288 D oligopeptide ABC transporter ATP-binding protein 894266..895288 Bacillus pumilus SAFR-032 5620065 YP_001486064.1 CDS appFC NC_009848.1 895257 896234 D oligopeptide ABC transporter ATP-binding protein 895257..896234 Bacillus pumilus SAFR-032 5620066 YP_001486065.1 CDS BPUM_0821 NC_009848.1 896209 897795 D peptide ABC transporter ATP-binding protein 896209..897795 Bacillus pumilus SAFR-032 5620067 YP_001486066.1 CDS appBC NC_009848.1 897812 898858 D peptide ABC transporter membrane protein 897812..898858 Bacillus pumilus SAFR-032 5620068 YP_001486067.1 CDS appCC NC_009848.1 898876 899772 D oligopeptide ABC transporter membrane protein 898876..899772 Bacillus pumilus SAFR-032 5620069 YP_001486068.1 CDS ygaE NC_009848.1 899802 900875 R hypothetical protein complement(899802..900875) Bacillus pumilus SAFR-032 5620070 YP_001486069.1 CDS gsaB NC_009848.1 901122 902417 R converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate; glutamate-1-semialdehyde aminotransferase complement(901122..902417) Bacillus pumilus SAFR-032 5620071 YP_001486070.1 CDS ygaF NC_009848.1 902547 903014 D bacterioferritin comigratory protein (BCP); peroxiredoxin YgaF 902547..903014 Bacillus pumilus SAFR-032 5620072 YP_001486071.1 CDS perR NC_009848.1 903173 903610 D Fur family transcriptional regulator PerR 903173..903610 Bacillus pumilus SAFR-032 5620073 YP_001486072.1 CDS ygzB NC_009848.1 903645 903992 R hypothetical protein complement(903645..903992) Bacillus pumilus SAFR-032 5620074 YP_001486073.1 CDS ygxA NC_009848.1 904182 905060 D hypothetical protein 904182..905060 Bacillus pumilus SAFR-032 5620075 YP_001486074.1 CDS BPUM_0830 NC_009848.1 911983 912438 D hypothetical protein 911983..912438 Bacillus pumilus SAFR-032 5620095 YP_001486075.1 CDS BPUM_0831 NC_009848.1 912848 913657 D aminoglycoside phosphotransferase 912848..913657 Bacillus pumilus SAFR-032 5620096 YP_001486076.1 CDS BPUM_0832 NC_009848.1 913802 914236 D hypothetical protein 913802..914236 Bacillus pumilus SAFR-032 5620097 YP_001486077.1 CDS BPUM_0833 NC_009848.1 914307 915005 D hypothetical protein 914307..915005 Bacillus pumilus SAFR-032 5620098 YP_001486078.1 CDS BPUM_0834 NC_009848.1 915024 915581 R GpmB; fructose-2,6-bisphosphate 2-phosphatase complement(915024..915581) Bacillus pumilus SAFR-032 5620099 YP_001486079.1 CDS BPUM_0835 NC_009848.1 915637 915828 R hypothetical protein complement(915637..915828) Bacillus pumilus SAFR-032 5620100 YP_001486080.1 CDS BPUM_0836 NC_009848.1 915951 916274 R hypothetical protein complement(915951..916274) Bacillus pumilus SAFR-032 5620101 YP_001486081.1 CDS BPUM_0837 NC_009848.1 916286 916975 R hypothetical protein complement(916286..916975) Bacillus pumilus SAFR-032 5620102 YP_001486082.1 CDS BPUM_0838 NC_009848.1 916994 917797 R hypothetical protein complement(916994..917797) Bacillus pumilus SAFR-032 5620103 YP_001486083.1 CDS yfnI NC_009848.1 918331 920271 D MdoB; phosphoglycerol transferase 918331..920271 Bacillus pumilus SAFR-032 5620104 YP_001486084.1 CDS sipP NC_009848.1 920323 921000 D signal peptidase 1 920323..921000 Bacillus pumilus SAFR-032 5620105 YP_001486085.1 CDS BPUM_0841 NC_009848.1 921027 922460 D transposase 921027..922460 Bacillus pumilus SAFR-032 5620106 YP_001486086.1 CDS yrpD NC_009848.1 922570 923322 R hypothetical protein complement(922570..923322) Bacillus pumilus SAFR-032 5620107 YP_001486087.1 CDS cspR NC_009848.1 923448 923921 R rRNA methyltransferase-like protein complement(923448..923921) Bacillus pumilus SAFR-032 5620108 YP_001486088.1 CDS yhbB NC_009848.1 923965 924867 R hypothetical protein complement(923965..924867) Bacillus pumilus SAFR-032 5620109 YP_001486089.1 CDS yhbA NC_009848.1 924929 926080 R hypothetical protein complement(924929..926080) Bacillus pumilus SAFR-032 5620110 YP_001486090.1 CDS yhzB NC_009848.1 926161 926757 D hypothetical protein 926161..926757 Bacillus pumilus SAFR-032 5620111 YP_001486091.1 CDS BPUM_0847 NC_009848.1 927057 927737 R hypothetical protein complement(927057..927737) Bacillus pumilus SAFR-032 5620113 YP_001486092.1 CDS BPUM_0848 NC_009848.1 927818 928099 R hypothetical protein complement(927818..928099) Bacillus pumilus SAFR-032 5620114 YP_001486093.1 CDS BPUM_0849 NC_009848.1 928096 929001 R hypothetical protein complement(928096..929001) Bacillus pumilus SAFR-032 5620115 YP_001486094.1 CDS BPUM_0850 NC_009848.1 928985 930451 R hypothetical protein complement(928985..930451) Bacillus pumilus SAFR-032 5620116 YP_001486095.1 CDS BPUM_0851 NC_009848.1 930429 931196 R ABC transporter ATP-binding protein complement(930429..931196) Bacillus pumilus SAFR-032 5620117 YP_001486096.1 CDS BPUM_0852 NC_009848.1 931291 931503 R hypothetical protein complement(931291..931503) Bacillus pumilus SAFR-032 5620118 YP_001486097.1 CDS BPUM_0853 NC_009848.1 931870 932019 D hypothetical protein 931870..932019 Bacillus pumilus SAFR-032 5620119 YP_001486098.1 CDS BPUM_0854 NC_009848.1 932269 933564 D catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase 932269..933564 Bacillus pumilus SAFR-032 5620120 YP_001486100.1 CDS prkA NC_009848.1 935465 937360 D inner spore coat serine protein kinase 935465..937360 Bacillus pumilus SAFR-032 5620122 YP_001486101.1 CDS yhbH NC_009848.1 937501 938664 D hypothetical protein 937501..938664 Bacillus pumilus SAFR-032 5620123 YP_001486102.1 CDS yhbJ NC_009848.1 939028 939660 D hypothetical protein 939028..939660 Bacillus pumilus SAFR-032 5620124 YP_001486103.1 CDS yhcA NC_009848.1 939700 941319 D major facilitator superfamily transporter 939700..941319 Bacillus pumilus SAFR-032 5620125 YP_001486104.1 CDS yhcB NC_009848.1 941337 941861 D hypothetical protein 941337..941861 Bacillus pumilus SAFR-032 5620126 YP_001486105.1 CDS yhcC NC_009848.1 941875 942234 D hypothetical protein 941875..942234 Bacillus pumilus SAFR-032 5620127 YP_001486106.1 CDS cspB NC_009848.1 942349 942588 R cspA; major cold shock protein complement(942349..942588) Bacillus pumilus SAFR-032 5620128 YP_001486107.1 CDS yhcK NC_009848.1 942767 943852 R ABC transporter ATP-binding protein complement(942767..943852) Bacillus pumilus SAFR-032 5620129 YP_001486108.1 CDS BPUM_0864 NC_009848.1 943933 944331 D hypothetical protein 943933..944331 Bacillus pumilus SAFR-032 5620130 YP_001486109.1 CDS yhcM NC_009848.1 944366 944764 R spore protein YhcM complement(944366..944764) Bacillus pumilus SAFR-032 5620131 YP_001486110.1 CDS yhcN NC_009848.1 944913 945422 D hypothetical protein 944913..945422 Bacillus pumilus SAFR-032 5620132 YP_001486111.1 CDS yhcP NC_009848.1 945558 946454 D hypothetical protein 945558..946454 Bacillus pumilus SAFR-032 5620133 YP_001486112.1 CDS yhcQ NC_009848.1 946480 947124 R possible spore coat protein; hypothetical protein complement(946480..947124) Bacillus pumilus SAFR-032 5620134 YP_001486113.1 CDS BPUM_0869 NC_009848.1 947269 950649 D sensor histidine kinase 947269..950649 Bacillus pumilus SAFR-032 5620135 YP_001486114.1 CDS yhcR NC_009848.1 950736 953627 D endonuclease 950736..953627 Bacillus pumilus SAFR-032 5620136 YP_001486115.1 CDS yhcS2 NC_009848.1 953674 954240 D C60A subfamily peptidase 953674..954240 Bacillus pumilus SAFR-032 5620137 YP_001486116.1 CDS rluA1 NC_009848.1 954276 955184 R 23S rRNA-specific pseudouridylate synthase YhcT; pseudouridylate synthase complement(954276..955184) Bacillus pumilus SAFR-032 5620138 YP_001486117.1 CDS yhcU NC_009848.1 955294 955644 D hypothetical protein 955294..955644 Bacillus pumilus SAFR-032 5620139 YP_001486118.1 CDS BPUM_0874 NC_009848.1 955717 955869 R hypothetical protein complement(955717..955869) Bacillus pumilus SAFR-032 5620140 YP_001486119.1 CDS yhcW NC_009848.1 955953 956618 D HAD family phosphatase 955953..956618 Bacillus pumilus SAFR-032 5620141 YP_001486120.1 CDS yhcX NC_009848.1 956634 958172 D amidohydrolase 956634..958172 Bacillus pumilus SAFR-032 5620142 YP_001486121.1 CDS BPUM_0877 NC_009848.1 958172 958717 D possible glyoxalase; hypothetical protein 958172..958717 Bacillus pumilus SAFR-032 5620143 YP_001486122.1 CDS BPUM_0878 NC_009848.1 958805 959722 D malonate efflux carrier 958805..959722 Bacillus pumilus SAFR-032 5620144 YP_001486123.1 CDS BPUM_0879 NC_009848.1 959755 961347 D possible transcriptional regulator; hypothetical protein 959755..961347 Bacillus pumilus SAFR-032 5620145 YP_001486124.1 CDS bioA NC_009848.1 961592 962932 D aminotransferase 961592..962932 Bacillus pumilus SAFR-032 5620146 YP_001486125.1 CDS glpP NC_009848.1 963104 963661 D glycerol uptake operon antiterminator regulatory protein; glycerol-3-phosphate responsive antiterminator 963104..963661 Bacillus pumilus SAFR-032 5620147 YP_001486126.1 CDS glpF NC_009848.1 963875 964690 D glycerol uptake facilitator protein; MIP family major intrinsic protein channel protein 963875..964690 Bacillus pumilus SAFR-032 5620148 YP_001486127.1 CDS glpK NC_009848.1 964706 966202 D Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase 964706..966202 Bacillus pumilus SAFR-032 5620149 YP_001486128.1 CDS glpD NC_009848.1 966342 968003 D glycerol-3-phosphate dehydrogenase 966342..968003 Bacillus pumilus SAFR-032 5620150 YP_001486129.1 CDS BPUM_0885 NC_009848.1 968337 970082 D YhxB; phosphoglucomutase 968337..970082 Bacillus pumilus SAFR-032 5620151 YP_001486130.1 CDS yhcY NC_009848.1 970216 971379 D possible two-component regulatory protein; spore sensor histidine kinase 970216..971379 Bacillus pumilus SAFR-032 5620152 YP_001486131.1 CDS yhcZ NC_009848.1 971376 972026 D transcriptional regulator 971376..972026 Bacillus pumilus SAFR-032 5620153 YP_001486132.1 CDS BPUM_0888 NC_009848.1 972115 972279 R hypothetical protein complement(972115..972279) Bacillus pumilus SAFR-032 5620154 YP_001486133.1 CDS BPUM_0889 NC_009848.1 972296 973162 D possible GNAT family acetyltransferase; hypothetical protein 972296..973162 Bacillus pumilus SAFR-032 5620155 YP_001486134.1 CDS yhdB NC_009848.1 973198 973479 R hypothetical protein complement(973198..973479) Bacillus pumilus SAFR-032 5620156 YP_001486135.1 CDS yhdC NC_009848.1 973575 973958 D hypothetical protein 973575..973958 Bacillus pumilus SAFR-032 5620157 YP_001486136.1 CDS katX2 NC_009848.1 974102 975577 R catalase KatX2 complement(974102..975577) Bacillus pumilus SAFR-032 5620158 YP_001486137.1 CDS yhdE NC_009848.1 975738 976169 R transcriptional regulator complement(975738..976169) Bacillus pumilus SAFR-032 5620159 YP_001486138.1 CDS hmp NC_009848.1 976353 977552 D nitric oxide dioxygenase 976353..977552 Bacillus pumilus SAFR-032 5620160 YP_001486139.1 CDS spoVR NC_009848.1 977620 979044 D stage V sporulation protein R 977620..979044 Bacillus pumilus SAFR-032 5620161 YP_001486140.1 CDS phoA NC_009848.1 979087 980451 R phoAIV; alkaline phosphatase A complement(979087..980451) Bacillus pumilus SAFR-032 5620162 YP_001486141.1 CDS lytE NC_009848.1 980806 981639 D C40 family murein endopeptidase; gamma-D-glutamate-meso-diaminopimelate muropeptidase CwlF; PapQ phosphatase-associated protein; vegetative cell wall hydrolase 980806..981639 Bacillus pumilus SAFR-032 5620163 YP_001486142.1 CDS orfX NC_009848.1 981746 982069 D transposase 981746..982069 Bacillus pumilus SAFR-032 5620164 YP_001486143.1 CDS BPUM_0899 NC_009848.1 982117 982926 D possible transposase; integrase 982117..982926 Bacillus pumilus SAFR-032 5620165 YP_001486144.1 CDS yhdK NC_009848.1 983079 983369 R possible regulator of SigM operon; hypothetical protein complement(983079..983369) Bacillus pumilus SAFR-032 5620166 YP_001486145.1 CDS yhdL NC_009848.1 983357 984418 R possible regulator of SigM operon; hypothetical protein complement(983357..984418) Bacillus pumilus SAFR-032 5620167 YP_001486146.1 CDS sigM NC_009848.1 984408 984899 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in B. subtilis this protein is activated in response to cell wall antibiotics, ethanol, heat, acid, and superoxide stress; RNA polymerase sigma factor SigM complement(984408..984899) Bacillus pumilus SAFR-032 5620168 YP_001486147.1 CDS plsC NC_009848.1 985271 985873 D YhdO; 1-acylglycerol-3-phosphate O-acyltransferase 985271..985873 Bacillus pumilus SAFR-032 5620169 YP_001486148.1 CDS yhdP NC_009848.1 985913 987244 R TlyC family hemolysin complement(985913..987244) Bacillus pumilus SAFR-032 5620170 YP_001486149.1 CDS cueR NC_009848.1 987303 987743 R MerR family transcriptional regulator complement(987303..987743) Bacillus pumilus SAFR-032 5620171 YP_001486150.1 CDS yhdT NC_009848.1 988078 989460 D TlyC family hemolysin 988078..989460 Bacillus pumilus SAFR-032 5620172 YP_001486151.1 CDS BPUM_0907 NC_009848.1 989550 989942 D hypothetical protein 989550..989942 Bacillus pumilus SAFR-032 5620173 YP_001486152.1 CDS ccrB1 NC_009848.1 989939 990304 R YhdU; camphor resistance protein CrcB1 complement(989939..990304) Bacillus pumilus SAFR-032 5620174 YP_001486153.1 CDS ccrB2 NC_009848.1 990323 990700 R YhdV; camphor resistance protein CrcB2 complement(990323..990700) Bacillus pumilus SAFR-032 5620175 YP_001486154.1 CDS ugpQ NC_009848.1 990706 991422 R YhdW; glycerophosphodiester phosphodiesterase complement(990706..991422) Bacillus pumilus SAFR-032 5620176 YP_001486155.1 CDS BPUM_0911 NC_009848.1 991456 991653 R hypothetical protein complement(991456..991653) Bacillus pumilus SAFR-032 5620177 YP_001486156.1 CDS yhdX NC_009848.1 991704 991805 D hypothetical protein 991704..991805 Bacillus pumilus SAFR-032 5620178 YP_001486157.1 CDS yhdY NC_009848.1 991970 993058 D MscS family small conductance mechanosenstive ion channel protein 991970..993058 Bacillus pumilus SAFR-032 5620179 YP_001486158.1 CDS yhdZ NC_009848.1 993073 993819 D Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 993073..993819 Bacillus pumilus SAFR-032 5620180 YP_001486159.1 CDS yheN1 NC_009848.1 993860 994714 R polysaccharide deacetylase complement(993860..994714) Bacillus pumilus SAFR-032 5620181 YP_001486160.1 CDS dat NC_009848.1 995011 995868 D YheM; D-amino-acid transaminase 995011..995868 Bacillus pumilus SAFR-032 5620182 YP_001486161.1 CDS nhaX NC_009848.1 995915 996439 R YheK; universal stress protein NhaX complement(995915..996439) Bacillus pumilus SAFR-032 5620183 YP_001486162.1 CDS yheI NC_009848.1 996983 998740 D ABC transporter ATP-binding protein 996983..998740 Bacillus pumilus SAFR-032 5620184 YP_001486163.1 CDS yheH NC_009848.1 998737 1000749 D ABC transporter ATP-binding protein 998737..1000749 Bacillus pumilus SAFR-032 5620185 YP_001486164.1 CDS yheG NC_009848.1 1000855 1001472 R NADH-flavin reductase complement(1000855..1001472) Bacillus pumilus SAFR-032 5620186 YP_001486165.1 CDS sspB NC_009848.1 1001759 1001962 R small acid-soluble spore protein B complement(1001759..1001962) Bacillus pumilus SAFR-032 5620187 YP_001486166.1 CDS msmX NC_009848.1 1002195 1003301 R sugar ABC transporter ATP-binding protein complement(1002195..1003301) Bacillus pumilus SAFR-032 5620188 YP_001486167.1 CDS BPUM_0923 NC_009848.1 1003441 1004316 R transcriptional regulator complement(1003441..1004316) Bacillus pumilus SAFR-032 5620189 YP_001486168.1 CDS BPUM_0924 NC_009848.1 1004337 1004546 R hypothetical protein complement(1004337..1004546) Bacillus pumilus SAFR-032 5620190 YP_001486169.1 CDS yheD NC_009848.1 1004700 1006058 R hypothetical protein complement(1004700..1006058) Bacillus pumilus SAFR-032 5620191 YP_001486170.1 CDS yheC NC_009848.1 1006015 1007118 R spore protein YheC complement(1006015..1007118) Bacillus pumilus SAFR-032 5620192 YP_001486171.1 CDS yheB NC_009848.1 1007333 1008466 D hypothetical protein 1007333..1008466 Bacillus pumilus SAFR-032 5620193 YP_001486172.1 CDS yheA NC_009848.1 1008588 1008944 D hypothetical protein 1008588..1008944 Bacillus pumilus SAFR-032 5620194 YP_001486173.1 CDS yhaX NC_009848.1 1009393 1010259 D HAD family phosphatase 1009393..1010259 Bacillus pumilus SAFR-032 5620195 YP_001486174.1 CDS hemZ NC_009848.1 1010373 1011872 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1010373..1011872 Bacillus pumilus SAFR-032 5620196 YP_001486175.1 CDS BPUM_0931 NC_009848.1 1011948 1013222 D lysine/ornithine N-monooxygenase 1011948..1013222 Bacillus pumilus SAFR-032 5620197 YP_001486176.1 CDS BPUM_0932 NC_009848.1 1013389 1014159 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 1013389..1014159 Bacillus pumilus SAFR-032 5620198 YP_001486177.1 CDS BPUM_0933 NC_009848.1 1014386 1014574 R hypothetical protein complement(1014386..1014574) Bacillus pumilus SAFR-032 5620199 YP_001486178.1 CDS yhaO NC_009848.1 1014747 1015961 D hypothetical protein 1014747..1015961 Bacillus pumilus SAFR-032 5620200 YP_001486179.1 CDS yhaN NC_009848.1 1015978 1018767 D hypothetical protein 1015978..1018767 Bacillus pumilus SAFR-032 5620201 YP_001486180.1 CDS yhaM NC_009848.1 1018830 1019774 D catalyzes the exonucleic cleavage of mRNA yielding nucleioside 5'-phosphates; 3'-5' exoribonuclease YhaM 1018830..1019774 Bacillus pumilus SAFR-032 5620202 YP_001486181.1 CDS yhaL NC_009848.1 1019891 1020121 D hypothetical protein 1019891..1020121 Bacillus pumilus SAFR-032 5620203 YP_001486182.1 CDS prsA NC_009848.1 1020175 1021053 R peptidylprolyl isomerase PrsA complement(1020175..1021053) Bacillus pumilus SAFR-032 5620204 YP_001486183.1 CDS BPUM_0939 NC_009848.1 1021187 1021300 D hypothetical protein 1021187..1021300 Bacillus pumilus SAFR-032 5620205 YP_001486185.1 CDS BPUM_0941 NC_009848.1 1021588 1021734 R hypothetical protein complement(1021588..1021734) Bacillus pumilus SAFR-032 5620207 YP_001486186.1 CDS BPUM_0942 NC_009848.1 1021856 1022374 R hypothetical protein complement(1021856..1022374) Bacillus pumilus SAFR-032 5620208 YP_001486187.1 CDS yhaI NC_009848.1 1022608 1022952 D hypothetical protein 1022608..1022952 Bacillus pumilus SAFR-032 5620209 YP_001486188.1 CDS hpr NC_009848.1 1022930 1023550 R hpr; ScoC; MarR family; protease production regulatory protein; transcriptional regulator Hpr complement(1022930..1023550) Bacillus pumilus SAFR-032 5620210 YP_001486189.1 CDS yhaH NC_009848.1 1023738 1024094 R hypothetical protein complement(1023738..1024094) Bacillus pumilus SAFR-032 5620211 YP_001486190.1 CDS BPUM_0946 NC_009848.1 1024223 1024414 D hypothetical protein 1024223..1024414 Bacillus pumilus SAFR-032 5620212 YP_001486191.1 CDS yhaG NC_009848.1 1024466 1024984 R hypothetical protein complement(1024466..1024984) Bacillus pumilus SAFR-032 5620213 YP_001486192.1 CDS serC NC_009848.1 1025110 1026189 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase complement(1025110..1026189) Bacillus pumilus SAFR-032 5620214 YP_001486193.1 CDS hit NC_009848.1 1026349 1026777 R YhaE; histidine triad (HIT) family hydrolase complement(1026349..1026777) Bacillus pumilus SAFR-032 5620215 YP_001486194.1 CDS BPUM_0950 NC_009848.1 1026781 1026933 D hypothetical protein 1026781..1026933 Bacillus pumilus SAFR-032 5620216 YP_001486195.1 CDS ecsA NC_009848.1 1027265 1028005 D ABC transporter ATP-binding protein 1027265..1028005 Bacillus pumilus SAFR-032 5620217 YP_001486196.1 CDS ecsB NC_009848.1 1027998 1029218 D ABC transporter ATP-binding protein 1027998..1029218 Bacillus pumilus SAFR-032 5620218 YP_001486197.1 CDS ecsC NC_009848.1 1029272 1029979 D ABC transporter ATP-binding protein 1029272..1029979 Bacillus pumilus SAFR-032 5620219 YP_001486198.1 CDS amaA NC_009848.1 1030009 1031196 R M20D subfamily metallopeptidase YhaA; aminoacylase complement(1030009..1031196) Bacillus pumilus SAFR-032 5620220 YP_001486199.1 CDS BPUM_0955 NC_009848.1 1031235 1031630 D hypothetical protein 1031235..1031630 Bacillus pumilus SAFR-032 5620221 YP_001486200.1 CDS BPUM_0956 NC_009848.1 1031891 1032376 R hypothetical protein complement(1031891..1032376) Bacillus pumilus SAFR-032 5620222 YP_001486201.1 CDS pbpF NC_009848.1 1032504 1034639 D penicillin-binding protein 2C 1032504..1034639 Bacillus pumilus SAFR-032 5620223 YP_001486202.1 CDS hemE NC_009848.1 1034764 1035822 D catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase 1034764..1035822 Bacillus pumilus SAFR-032 5620224 YP_001486203.1 CDS hemH NC_009848.1 1035855 1036793 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1035855..1036793 Bacillus pumilus SAFR-032 5620225 YP_001486204.1 CDS hemY NC_009848.1 1036816 1038228 D catalyzes the formation of protoporphyrin IX from protoporphyrinogen IX; protoporphyrinogen oxidase 1036816..1038228 Bacillus pumilus SAFR-032 5620226 YP_001486205.1 CDS yhgD NC_009848.1 1038403 1038981 D TetR/AcrR family transcriptional regulator 1038403..1038981 Bacillus pumilus SAFR-032 5620227 YP_001486206.1 CDS yhgE NC_009848.1 1039046 1041355 D possible phage infection protein; hypothetical protein 1039046..1041355 Bacillus pumilus SAFR-032 5620228 YP_001486207.1 CDS yhfE NC_009848.1 1041499 1042548 D spore protease YhfE; M42 family peptidase 1041499..1042548 Bacillus pumilus SAFR-032 5620229 YP_001486208.1 CDS BPUM_0964 NC_009848.1 1042605 1042787 D hypothetical protein 1042605..1042787 Bacillus pumilus SAFR-032 5620230 YP_001486209.1 CDS gltT NC_009848.1 1042784 1044073 R DAACS family dicarboxylate/amino acid:cation symporter complement(1042784..1044073) Bacillus pumilus SAFR-032 5620231 YP_001486210.1 CDS yhfH NC_009848.1 1044413 1044550 R hypothetical protein complement(1044413..1044550) Bacillus pumilus SAFR-032 5620232 YP_001486211.1 CDS yhfI NC_009848.1 1044707 1045450 D metal-dependent hydrolase 1044707..1045450 Bacillus pumilus SAFR-032 5620233 YP_001486212.1 CDS yhfJ NC_009848.1 1045453 1046442 D LplA; lipoate--protein ligase 1045453..1046442 Bacillus pumilus SAFR-032 5620234 YP_001486213.1 CDS lcfA1 NC_009848.1 1046615 1048168 D activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase 1046615..1048168 Bacillus pumilus SAFR-032 5620235 YP_001486214.1 CDS yhfM NC_009848.1 1048249 1048656 R hypothetical protein complement(1048249..1048656) Bacillus pumilus SAFR-032 5620236 YP_001486215.1 CDS yhfN NC_009848.1 1048834 1050114 D possible metalloprotease; M48 family peptidase 1048834..1050114 Bacillus pumilus SAFR-032 5620237 YP_001486216.1 CDS aprE1 NC_009848.1 1050155 1051300 R S8 family serine protease; subtilisin complement(1050155..1051300) Bacillus pumilus SAFR-032 5620238 YP_001486217.1 CDS yhfR NC_009848.1 1051689 1052273 R phosphoglycerate mutase family protein complement(1051689..1052273) Bacillus pumilus SAFR-032 5620239 YP_001486218.1 CDS BPUM_0974 NC_009848.1 1052335 1053630 R haem-based aerotactic transducer HemAT; methyl-accepting chemotaxis protein complement(1052335..1053630) Bacillus pumilus SAFR-032 5620240 YP_001486219.1 CDS yhfW NC_009848.1 1053722 1055254 R dehydrogenase complement(1053722..1055254) Bacillus pumilus SAFR-032 5620241 YP_001486220.1 CDS yhxC NC_009848.1 1055400 1056260 D alcohol dehydrogenase like protein; spore short-chain dehydrogenase 1055400..1056260 Bacillus pumilus SAFR-032 5620242 YP_001486221.1 CDS yhzC NC_009848.1 1056323 1056553 R hypothetical protein complement(1056323..1056553) Bacillus pumilus SAFR-032 5620243 YP_001486222.1 CDS comK NC_009848.1 1056843 1057421 D competence protein K; competence transcription factor CTF 1056843..1057421 Bacillus pumilus SAFR-032 5620244 YP_001486223.1 CDS BPUM_0979 NC_009848.1 1057581 1058687 D possible amino acid aldolase/racemase YncD; alanine racemase 1057581..1058687 Bacillus pumilus SAFR-032 5620245 YP_001486224.1 CDS BPUM_0980 NC_009848.1 1059000 1059482 D hypothetical protein 1059000..1059482 Bacillus pumilus SAFR-032 5620246 YP_001486225.1 CDS ydeL NC_009848.1 1059513 1060952 R GntR family transcriptional regulator complement(1059513..1060952) Bacillus pumilus SAFR-032 5620247 YP_001486226.1 CDS BPUM_0982 NC_009848.1 1061070 1062266 D possible multidrug resistance efflux protein; major facilitator superfamily transporter 1061070..1062266 Bacillus pumilus SAFR-032 5620248 YP_001486227.1 CDS yrdF NC_009848.1 1062332 1062607 D barstar-like protein ribonuclease (barnase) inhibitor 1062332..1062607 Bacillus pumilus SAFR-032 5620249 YP_001486228.1 CDS yclN NC_009848.1 1062773 1063723 D ABC transporter ATP-binding protein 1062773..1063723 Bacillus pumilus SAFR-032 5620250 YP_001486229.1 CDS yclO NC_009848.1 1063716 1064666 D ABC transporter ATP-binding protein 1063716..1064666 Bacillus pumilus SAFR-032 5620251 YP_001486230.1 CDS yclP NC_009848.1 1064657 1065415 D ABC transporter ATP-binding protein 1064657..1065415 Bacillus pumilus SAFR-032 5620252 YP_001486231.1 CDS yclQ NC_009848.1 1065438 1066382 D ABC transporter ATP-binding protein 1065438..1066382 Bacillus pumilus SAFR-032 5620253 YP_001486232.1 CDS BPUM_0988 NC_009848.1 1066523 1067491 D LytR family transcriptional regulator 1066523..1067491 Bacillus pumilus SAFR-032 5620254 YP_001486233.1 CDS BPUM_0989 NC_009848.1 1067560 1067928 R hypothetical protein complement(1067560..1067928) Bacillus pumilus SAFR-032 5620255 YP_001486234.1 CDS yhjE NC_009848.1 1068075 1068692 D hypothetical protein 1068075..1068692 Bacillus pumilus SAFR-032 5620256 YP_001486235.1 CDS yhjN NC_009848.1 1069240 1070385 R ammonia monooxygenase complement(1069240..1070385) Bacillus pumilus SAFR-032 5620257 YP_001486236.1 CDS BPUM_0992 NC_009848.1 1071067 1071906 D M56 family unassigned peptidase 1071067..1071906 Bacillus pumilus SAFR-032 5620258 YP_001486237.1 CDS addB NC_009848.1 1073170 1076691 D recombination initiation protein AddB; ATP-dependent deoxyribonuclease subunit B 1073170..1076691 Bacillus pumilus SAFR-032 5620259 YP_001486238.1 CDS addA NC_009848.1 1076669 1080373 D recombination initiation protein AddA; ATP-dependent deoxyribonuclease subunit A 1076669..1080373 Bacillus pumilus SAFR-032 5620260 YP_001486239.1 CDS sbcD NC_009848.1 1080400 1081575 D DNA repair exonuclease subunit D 1080400..1081575 Bacillus pumilus SAFR-032 5620261 YP_001486240.1 CDS sbcC NC_009848.1 1081572 1084967 D YirY; DNA repair exonuclease subunit C 1081572..1084967 Bacillus pumilus SAFR-032 5620262 YP_001486241.1 CDS yisB NC_009848.1 1084987 1085286 D hypothetical protein 1084987..1085286 Bacillus pumilus SAFR-032 5620263 YP_001486242.1 CDS gerPF NC_009848.1 1085333 1085560 R spore germination protein PF complement(1085333..1085560) Bacillus pumilus SAFR-032 5620264 YP_001486243.1 CDS gerPE NC_009848.1 1085574 1086005 R spore germination protein PE complement(1085574..1086005) Bacillus pumilus SAFR-032 5620265 YP_001486244.1 CDS gerPD NC_009848.1 1086005 1086181 R spore germination protein PD complement(1086005..1086181) Bacillus pumilus SAFR-032 5620266 YP_001486245.1 CDS gerPC NC_009848.1 1086178 1086798 R spore germination protein PC complement(1086178..1086798) Bacillus pumilus SAFR-032 5620267 YP_001486246.1 CDS gerPB NC_009848.1 1086824 1087057 R spore germination protein PB complement(1086824..1087057) Bacillus pumilus SAFR-032 5620268 YP_001486247.1 CDS gerPA NC_009848.1 1087072 1087293 R spore germination protein PA complement(1087072..1087293) Bacillus pumilus SAFR-032 5620269 YP_001486248.1 CDS yisI NC_009848.1 1087421 1087582 R hypothetical protein complement(1087421..1087582) Bacillus pumilus SAFR-032 5620270 YP_001486249.1 CDS cotH NC_009848.1 1087705 1088799 R spore coat assembly protein YwrH; inner spore coat protein H complement(1087705..1088799) Bacillus pumilus SAFR-032 5620271 YP_001486250.1 CDS BPUM_1006 NC_009848.1 1088874 1089590 R possible spore coat protein G; hypothetical protein complement(1088874..1089590) Bacillus pumilus SAFR-032 5620272 YP_001486251.1 CDS yisK NC_009848.1 1089713 1090618 D fumarylacetoacetate hydrolase 1089713..1090618 Bacillus pumilus SAFR-032 5620273 YP_001486252.1 CDS yisL NC_009848.1 1090711 1091079 D hypothetical protein 1090711..1091079 Bacillus pumilus SAFR-032 5620274 YP_001486253.1 CDS yisN NC_009848.1 1091118 1091645 R hypothetical protein complement(1091118..1091645) Bacillus pumilus SAFR-032 5620275 YP_001486254.1 CDS asnO NC_009848.1 1091795 1093642 D asparagine synthase 1091795..1093642 Bacillus pumilus SAFR-032 5620276 YP_001486255.1 CDS BPUM_1011 NC_009848.1 1093790 1095307 D phytoene dehydrogenase 1093790..1095307 Bacillus pumilus SAFR-032 5620277 YP_001486256.1 CDS yisP NC_009848.1 1096772 1097611 D phytoene synthase 1096772..1097611 Bacillus pumilus SAFR-032 5620278 YP_001486257.1 CDS yisQ NC_009848.1 1097637 1099013 R MATE family multi antimicrobial extrusion protein complement(1097637..1099013) Bacillus pumilus SAFR-032 5620279 YP_001486258.1 CDS yisR NC_009848.1 1099127 1099993 D transcriptional regulator 1099127..1099993 Bacillus pumilus SAFR-032 5620280 YP_001486259.1 CDS BPUM_1015 NC_009848.1 1100008 1100565 D acetyltransferase 1100008..1100565 Bacillus pumilus SAFR-032 5620281 YP_001486260.1 CDS BPUM_1016 NC_009848.1 1100629 1100904 D hypothetical protein 1100629..1100904 Bacillus pumilus SAFR-032 5620282 YP_001486261.1 CDS BPUM_1017 NC_009848.1 1100933 1101196 D hypothetical protein 1100933..1101196 Bacillus pumilus SAFR-032 5620283 YP_001486262.1 CDS BPUM_1018 NC_009848.1 1101178 1101726 R serine O-acetyltransferase complement(1101178..1101726) Bacillus pumilus SAFR-032 5620284 YP_001486263.1 CDS BPUM_1019 NC_009848.1 1102113 1103459 D catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 1102113..1103459 Bacillus pumilus SAFR-032 5620285 YP_001486264.1 CDS BPUM_1020 NC_009848.1 1103446 1104942 D diaminobutyrate decarboxylase 1103446..1104942 Bacillus pumilus SAFR-032 5620286 YP_001486265.1 CDS BPUM_1021 NC_009848.1 1104939 1106720 D IucA/IucC family siderophore biosynthesis protein 1104939..1106720 Bacillus pumilus SAFR-032 5620287 YP_001486266.1 CDS BPUM_1022 NC_009848.1 1106717 1107271 D possible acetyltransferase; siderophore biosynthesis protein 1106717..1107271 Bacillus pumilus SAFR-032 5620288 YP_001486267.1 CDS iucD NC_009848.1 1107246 1108595 D possible siderophore biosynthesis protein; L-lysine 6-monooxygenase 1107246..1108595 Bacillus pumilus SAFR-032 5620289 YP_001486268.1 CDS BPUM_1024 NC_009848.1 1108609 1110423 D IucA/IucC family siderophore biosynthesis protein 1108609..1110423 Bacillus pumilus SAFR-032 5620290 YP_001486269.1 CDS yitH NC_009848.1 1110466 1111323 R GNAT family acetyltransferase complement(1110466..1111323) Bacillus pumilus SAFR-032 5620291 YP_001486270.1 CDS BPUM_1026 NC_009848.1 1111491 1114919 R cobalamin-dependent methionine synthase; methionine synthase complement(1111491..1114919) Bacillus pumilus SAFR-032 5620292 YP_001486271.1 CDS yitJ NC_009848.1 1114903 1116744 R catalyzes the formation of 5,10-methylenetetrahydrofolate from 5-methyltetrahydrofolate and S-adenosyl-L-homocysteine and methionine from S-adenosyl-L-methionine and L-homocysteine; expressed in B. subtilis under methionine starvation conditions; bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase complement(1114903..1116744) Bacillus pumilus SAFR-032 5620293 YP_001486272.1 CDS yitK NC_009848.1 1117023 1117514 R putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein complement(1117023..1117514) Bacillus pumilus SAFR-032 5620294 YP_001486273.1 CDS yitL NC_009848.1 1117752 1118600 D possible nucleic acid binding protein; hypothetical protein 1117752..1118600 Bacillus pumilus SAFR-032 5620295 YP_001486274.1 CDS yufN NC_009848.1 1118675 1119799 D lipid ABC transporter substrate-binding protein 1118675..1119799 Bacillus pumilus SAFR-032 5620296 YP_001486275.1 CDS BPUM_1031 NC_009848.1 1119796 1121445 D sensor histidine kinase 1119796..1121445 Bacillus pumilus SAFR-032 5620297 YP_001486276.1 CDS yitS NC_009848.1 1121493 1122347 R DegV family protein YitS; spore protein YitS complement(1121493..1122347) Bacillus pumilus SAFR-032 5620298 YP_001486277.1 CDS yitT NC_009848.1 1122488 1123330 D hypothetical protein 1122488..1123330 Bacillus pumilus SAFR-032 5620299 YP_001486278.1 CDS ipi NC_009848.1 1123441 1123800 D intracellular proteinase inhibitor BsuPI 1123441..1123800 Bacillus pumilus SAFR-032 5620300 YP_001486279.1 CDS BPUM_1035 NC_009848.1 1123861 1124052 R hypothetical protein complement(1123861..1124052) Bacillus pumilus SAFR-032 5620301 YP_001486280.1 CDS BPUM_1036 NC_009848.1 1124049 1124201 R hypothetical protein complement(1124049..1124201) Bacillus pumilus SAFR-032 5620302 YP_001486281.1 CDS yitU NC_009848.1 1124290 1125102 R HAD family phosphatase complement(1124290..1125102) Bacillus pumilus SAFR-032 5620303 YP_001486282.1 CDS yitV NC_009848.1 1125239 1126024 D serine peptidase 1125239..1126024 Bacillus pumilus SAFR-032 5620304 YP_001486283.1 CDS yitW NC_009848.1 1126070 1126378 D hypothetical protein 1126070..1126378 Bacillus pumilus SAFR-032 5620305 YP_001486284.1 CDS yitY NC_009848.1 1126501 1127946 D possible FAD/FMN-containing oxidoreductase GlcD; major facilitator superfamily transporter 1126501..1127946 Bacillus pumilus SAFR-032 5620306 YP_001486285.1 CDS yitZ NC_009848.1 1127943 1128491 D major facilitator superfamily transporter 1127943..1128491 Bacillus pumilus SAFR-032 5620307 YP_001486286.1 CDS argC NC_009848.1 1128623 1129666 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis and the reduction of N-acetyl-gamma-aminoadipyl-phosphate to N-acetyl-L-aminoadipate-semialdehyde in lysine biosynthesis; involved in both the arginine and lysine biosynthetic pathways; lysine is produced via the AAA pathway, lysine from alpha-aminoadipate; N-acetyl-gamma-glutamyl-phosphate reductase 1128623..1129666 Bacillus pumilus SAFR-032 5620308 YP_001486287.1 CDS argJ NC_009848.1 1129687 1130907 D bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 1129687..1130907 Bacillus pumilus SAFR-032 5620309 YP_001486288.1 CDS argB NC_009848.1 1130922 1131698 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 1130922..1131698 Bacillus pumilus SAFR-032 5620310 YP_001486289.1 CDS argD NC_009848.1 1131695 1132846 D acetylornithine aminotransferase 1131695..1132846 Bacillus pumilus SAFR-032 5620311 YP_001486290.1 CDS carA NC_009848.1 1132916 1133977 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1132916..1133977 Bacillus pumilus SAFR-032 5620312 YP_001486291.1 CDS carB NC_009848.1 1133970 1137050 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1133970..1137050 Bacillus pumilus SAFR-032 5620313 YP_001486292.1 CDS argF NC_009848.1 1137047 1137997 D catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 1137047..1137997 Bacillus pumilus SAFR-032 5620314 YP_001486293.1 CDS yjzC NC_009848.1 1138100 1138279 D hypothetical protein 1138100..1138279 Bacillus pumilus SAFR-032 5620315 YP_001486294.1 CDS yvqJ1 NC_009848.1 1138450 1139715 D possible macrolide-efflux protein; major facilitator superfamily transporter 1138450..1139715 Bacillus pumilus SAFR-032 5620316 YP_001486295.1 CDS yjzD NC_009848.1 1139831 1140025 R hypothetical protein complement(1139831..1140025) Bacillus pumilus SAFR-032 5620317 YP_001486296.1 CDS yjaU NC_009848.1 1140237 1140977 D hypothetical protein 1140237..1140977 Bacillus pumilus SAFR-032 5620318 YP_001486297.1 CDS yjaV NC_009848.1 1141053 1141628 D hypothetical protein 1141053..1141628 Bacillus pumilus SAFR-032 5620319 YP_001486298.1 CDS med NC_009848.1 1141719 1142681 D lipoprotein YjaW; positive regulator of comK 1141719..1142681 Bacillus pumilus SAFR-032 5620320 YP_001486299.1 CDS comZ NC_009848.1 1142692 1142889 D late competence protein ComZ 1142692..1142889 Bacillus pumilus SAFR-032 5620321 YP_001486300.1 CDS BPUM_1056 NC_009848.1 1142900 1143133 R hypothetical protein complement(1142900..1143133) Bacillus pumilus SAFR-032 5620322 YP_001486301.1 CDS fabHA NC_009848.1 1143303 1144241 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1143303..1144241 Bacillus pumilus SAFR-032 5620323 YP_001486302.1 CDS fabF NC_009848.1 1144263 1145504 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1144263..1145504 Bacillus pumilus SAFR-032 5620324 YP_001486303.1 CDS yjaZ NC_009848.1 1145582 1146385 D hypothetical protein 1145582..1146385 Bacillus pumilus SAFR-032 5620325 YP_001486304.1 CDS appD NC_009848.1 1146547 1147527 D oligopeptide ABC transporter ATP-binding protein 1146547..1147527 Bacillus pumilus SAFR-032 5620326 YP_001486305.1 CDS appF NC_009848.1 1147524 1148546 D oligopeptide ABC transporter ATP-binding protein 1147524..1148546 Bacillus pumilus SAFR-032 5620327 YP_001486306.1 CDS appA NC_009848.1 1148630 1150261 D oligopeptide ABC transporter substrate-binding protein 1148630..1150261 Bacillus pumilus SAFR-032 5620328 YP_001486307.1 CDS appB NC_009848.1 1150490 1151440 D oligopeptide ABC transporter membrane protein 1150490..1151440 Bacillus pumilus SAFR-032 5620329 YP_001486308.1 CDS appC NC_009848.1 1151474 1152373 D oligopeptide ABC transporter membrane protein 1151474..1152373 Bacillus pumilus SAFR-032 5620330 YP_001486309.1 CDS BPUM_1065 NC_009848.1 1152491 1153243 D methyltransferase 1152491..1153243 Bacillus pumilus SAFR-032 5620331 YP_001486310.1 CDS yfiS NC_009848.1 1153433 1154677 D major facilitator superfamily transporter 1153433..1154677 Bacillus pumilus SAFR-032 5620332 YP_001486311.1 CDS yjbA NC_009848.1 1154750 1155502 D hypothetical protein 1154750..1155502 Bacillus pumilus SAFR-032 5620333 YP_001486312.1 CDS trpS NC_009848.1 1155538 1156533 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(1155538..1156533) Bacillus pumilus SAFR-032 5620334 YP_001486313.1 CDS BPUM_1069 NC_009848.1 1156850 1157209 R hypothetical protein complement(1156850..1157209) Bacillus pumilus SAFR-032 5620335 YP_001486314.1 CDS BPUM_1070 NC_009848.1 1157563 1159221 D oligopeptide ABC transporter substrate-binding protein 1157563..1159221 Bacillus pumilus SAFR-032 5620336 YP_001486315.1 CDS oppB NC_009848.1 1159331 1160260 D sporulation related transporter Spo0KB; oligopeptide ABC transporter membrane protein 1159331..1160260 Bacillus pumilus SAFR-032 5620337 YP_001486316.1 CDS oppC NC_009848.1 1160257 1161288 D oligopeptide ABC transporter membrane protein 1160257..1161288 Bacillus pumilus SAFR-032 5620338 YP_001486317.1 CDS oppD NC_009848.1 1161304 1162368 D oligopeptide ABC transporter ATP-binding protein 1161304..1162368 Bacillus pumilus SAFR-032 5620339 YP_001486318.1 CDS oppF NC_009848.1 1162361 1163290 D ABC transporter ATP-binding protein 1162361..1163290 Bacillus pumilus SAFR-032 5620340 YP_001486319.1 CDS BPUM_1075 NC_009848.1 1163396 1163683 D hypothetical protein 1163396..1163683 Bacillus pumilus SAFR-032 5620341 YP_001486320.1 CDS yjbC NC_009848.1 1163820 1164398 D N-acetyltransferase GCN5 1163820..1164398 Bacillus pumilus SAFR-032 5620342 YP_001486321.1 CDS spxA NC_009848.1 1164592 1164987 D the anti-alpha factor Spx interacts with RNA polymerase alpha subunit C-terminal domain in a region that interacts with the sigma 70 subunit and may interfere with activation of promoters; in Bacillus subtilis this protein is a substrate for ClpXP protease; blocks transcription of the competence regulatory gene encoded by the srf operon; regulates a number of genes involved in thiol homeostasis including trxA and trxB; monomeric member of ArsC family of proteins; does not bind DNA; contains a disulfide bond between C10 and C13 which may sense disulfide stress; transcriptional regulator Spx 1164592..1164987 Bacillus pumilus SAFR-032 5620343 YP_001486322.1 CDS yjbE NC_009848.1 1165028 1165693 R TerC; hypothetical protein complement(1165028..1165693) Bacillus pumilus SAFR-032 5620344 YP_001486323.1 CDS mecA NC_009848.1 1165956 1166621 D enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein 1165956..1166621 Bacillus pumilus SAFR-032 5620345 YP_001486324.1 CDS cls NC_009848.1 1166707 1168227 D catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase 1166707..1168227 Bacillus pumilus SAFR-032 5620346 YP_001486325.1 CDS yjbF NC_009848.1 1168391 1169551 D CoiA; competence protein 1168391..1169551 Bacillus pumilus SAFR-032 5620347 YP_001486326.1 CDS yjbG NC_009848.1 1169532 1171592 D PepF; M03 oligoendopeptidase F 1169532..1171592 Bacillus pumilus SAFR-032 5620348 YP_001486327.1 CDS BPUM_1083 NC_009848.1 1171696 1171869 R hypothetical protein complement(1171696..1171869) Bacillus pumilus SAFR-032 5620349 YP_001486328.1 CDS yjbH NC_009848.1 1172167 1173078 R hypothetical protein complement(1172167..1173078) Bacillus pumilus SAFR-032 5620350 YP_001486329.1 CDS yjbI NC_009848.1 1173075 1173473 R hemoglobin complement(1173075..1173473) Bacillus pumilus SAFR-032 5620351 YP_001486330.1 CDS yjbJ NC_009848.1 1173750 1174520 R ABC transporter ATP-binding protein complement(1173750..1174520) Bacillus pumilus SAFR-032 5620352 YP_001486331.1 CDS yjbK NC_009848.1 1174539 1175117 R hypothetical protein complement(1174539..1175117) Bacillus pumilus SAFR-032 5620353 YP_001486332.1 CDS yjbL NC_009848.1 1175351 1175719 D hypothetical protein 1175351..1175719 Bacillus pumilus SAFR-032 5620354 YP_001486333.1 CDS yjbM NC_009848.1 1175753 1176382 D hypothetical protein 1175753..1176382 Bacillus pumilus SAFR-032 5620355 YP_001486334.1 CDS ppnK NC_009848.1 1176448 1177248 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 1176448..1177248 Bacillus pumilus SAFR-032 5620356 YP_001486335.1 CDS rluA2 NC_009848.1 1177293 1178159 D pseudouridylate synthase 1177293..1178159 Bacillus pumilus SAFR-032 5620357 YP_001486336.1 CDS yjbP NC_009848.1 1178201 1178944 R asymmetrical; catalyzes the formation of NTP and NMP from P(1),P(4)-bis(5'-nucleosyl) tetraphosphate; acts on bis(5'-guanosyl) tetraphosphate, bis(5'-xanthosyl)-tetraphosphate, on bis(5'-adenosyl)-tetraphosphate, and bis(5'-uridyl)-tetraphosphate; bis(5'-nucleosyl)-tetraphosphatase complement(1178201..1178944) Bacillus pumilus SAFR-032 5620358 YP_001486337.1 CDS yjbQ NC_009848.1 1179107 1180948 D CPA2 family monovalent cation:proton (H+) antiporter-2 1179107..1180948 Bacillus pumilus SAFR-032 5620359 YP_001486338.1 CDS tenA NC_009848.1 1181196 1181906 D thiaminase 1181196..1181906 Bacillus pumilus SAFR-032 5620360 YP_001486339.1 CDS tenI NC_009848.1 1181866 1182498 D regulates the production of extracellular enzymes; transcriptional regulator TenI 1181866..1182498 Bacillus pumilus SAFR-032 5620361 YP_001486340.1 CDS goxB NC_009848.1 1182482 1183594 D glycine oxidase 1182482..1183594 Bacillus pumilus SAFR-032 5620362 YP_001486341.1 CDS thiS NC_009848.1 1183591 1183794 D thiamine biosynthesis protein YjbS; hydroxyethylthiazole phosphate biosynthesis protein 1183591..1183794 Bacillus pumilus SAFR-032 5620363 YP_001486342.1 CDS thiG NC_009848.1 1183799 1184566 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 1183799..1184566 Bacillus pumilus SAFR-032 5620364 YP_001486343.1 CDS thiF NC_009848.1 1184563 1185576 D catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways; thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein 1184563..1185576 Bacillus pumilus SAFR-032 5620365 YP_001486344.1 CDS thiDA NC_009848.1 1185593 1186399 D catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 1185593..1186399 Bacillus pumilus SAFR-032 5620366 YP_001486345.1 CDS fabI NC_009848.1 1186550 1187326 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-ACP reductase 1186550..1187326 Bacillus pumilus SAFR-032 5620367 YP_001486346.1 CDS yjbX NC_009848.1 1187441 1188055 D possible spore coat protein CotO; spore protein YjbX 1187441..1188055 Bacillus pumilus SAFR-032 5620368 YP_001486347.1 CDS cotZ NC_009848.1 1188091 1188534 R spore coat protein Z complement(1188091..1188534) Bacillus pumilus SAFR-032 5620369 YP_001486348.1 CDS BPUM_1104 NC_009848.1 1188551 1188712 R hypothetical protein complement(1188551..1188712) Bacillus pumilus SAFR-032 5620370 YP_001486349.1 CDS cotY NC_009848.1 1188740 1189231 R spore coat protein Y complement(1188740..1189231) Bacillus pumilus SAFR-032 5620371 YP_001486350.1 CDS cotX NC_009848.1 1189378 1189857 R spore coat protein X complement(1189378..1189857) Bacillus pumilus SAFR-032 5620372 YP_001486351.1 CDS cotW NC_009848.1 1189946 1190329 R spore coat protein W complement(1189946..1190329) Bacillus pumilus SAFR-032 5620373 YP_001486352.1 CDS cotV NC_009848.1 1190326 1190721 R spore coat protein V complement(1190326..1190721) Bacillus pumilus SAFR-032 5620374 YP_001486353.1 CDS yjcA NC_009848.1 1190902 1191240 D hypothetical protein 1190902..1191240 Bacillus pumilus SAFR-032 5620375 YP_001486354.1 CDS BPUM_1110 NC_009848.1 1191273 1191440 D hypothetical protein 1191273..1191440 Bacillus pumilus SAFR-032 5620376 YP_001486355.1 CDS BPUM_1111 NC_009848.1 1191518 1191748 D hypothetical protein 1191518..1191748 Bacillus pumilus SAFR-032 5620377 YP_001486356.1 CDS yosA NC_009848.1 1191833 1191958 D hypothetical protein 1191833..1191958 Bacillus pumilus SAFR-032 5620378 YP_001486357.1 CDS spoVIF NC_009848.1 1192097 1192354 D spore coat assembly protein YjcC 1192097..1192354 Bacillus pumilus SAFR-032 5620379 YP_001486358.1 CDS yjcD NC_009848.1 1192371 1194683 R UvrD Rep family helicase complement(1192371..1194683) Bacillus pumilus SAFR-032 5620380 YP_001486359.1 CDS BPUM_1115 NC_009848.1 1194807 1195067 D hypothetical protein 1194807..1195067 Bacillus pumilus SAFR-032 5620381 YP_001486360.1 CDS yjcF NC_009848.1 1195148 1195582 R acetyltransferase complement(1195148..1195582) Bacillus pumilus SAFR-032 5620382 YP_001486361.1 CDS ligT NC_009848.1 1195589 1196104 R similar to 2'-5' RNA ligase; hypothetical protein complement(1195589..1196104) Bacillus pumilus SAFR-032 5620383 YP_001486362.1 CDS yjcH NC_009848.1 1196157 1196897 R possible methylumbelliferyl-acetate deacetylase; esterase complement(1196157..1196897) Bacillus pumilus SAFR-032 5620384 YP_001486363.1 CDS yjcI NC_009848.1 1197320 1198438 D catalyzes the formation of cysteine from cystathionine; in B. subtilis also has O-acetylhomoserine thiolyase activity; cystathionine gamma-synthase 1197320..1198438 Bacillus pumilus SAFR-032 5620385 YP_001486364.1 CDS yjcJ NC_009848.1 1198435 1199613 D catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 1198435..1199613 Bacillus pumilus SAFR-032 5620386 YP_001486365.1 CDS BPUM_1121 NC_009848.1 1200154 1200990 D hypothetical protein 1200154..1200990 Bacillus pumilus SAFR-032 5620388 YP_001486366.1 CDS BPUM_1122 NC_009848.1 1201258 1201596 R transcriptional regulator complement(1201258..1201596) Bacillus pumilus SAFR-032 5620389 YP_001486367.1 CDS BPUM_1123 NC_009848.1 1201702 1202085 D hypothetical protein 1201702..1202085 Bacillus pumilus SAFR-032 5620390 YP_001486368.1 CDS BPUM_1124 NC_009848.1 1202320 1202508 D hypothetical protein 1202320..1202508 Bacillus pumilus SAFR-032 5620391 YP_001486369.1 CDS accA1 NC_009848.1 1202715 1203653 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(1202715..1203653) Bacillus pumilus SAFR-032 5620392 YP_001486370.1 CDS BPUM_1126 NC_009848.1 1203686 1204132 R MarR family transcriptional regulator complement(1203686..1204132) Bacillus pumilus SAFR-032 5620393 YP_001486371.1 CDS BPUM_1127 NC_009848.1 1205014 1205409 R hypothetical protein complement(1205014..1205409) Bacillus pumilus SAFR-032 5620394 YP_001486372.1 CDS BPUM_1128 NC_009848.1 1206033 1206221 R hypothetical protein complement(1206033..1206221) Bacillus pumilus SAFR-032 5620395 YP_001486373.1 CDS BPUM_1129 NC_009848.1 1206347 1206766 R hypothetical protein complement(1206347..1206766) Bacillus pumilus SAFR-032 5620396 YP_001486374.1 CDS BPUM_1130 NC_009848.1 1206948 1207778 D acetylxylan esterase 1206948..1207778 Bacillus pumilus SAFR-032 5620397 YP_001486375.1 CDS cat NC_009848.1 1207866 1208528 D chloramphenicol O-acetyltransferase 1207866..1208528 Bacillus pumilus SAFR-032 5620398 YP_001486376.1 CDS rapH NC_009848.1 1208729 1209847 D aspartate phosphatase response regulator H 1208729..1209847 Bacillus pumilus SAFR-032 5620399 YP_001486377.1 CDS phrH NC_009848.1 1209837 1210010 D RapH phosphatase inhibitor 1209837..1210010 Bacillus pumilus SAFR-032 5620400 YP_001486378.1 CDS BPUM_1134 NC_009848.1 1210120 1210947 D hypothetical protein 1210120..1210947 Bacillus pumilus SAFR-032 5620401 YP_001486379.1 CDS BPUM_1135 NC_009848.1 1210989 1211864 R LysR family transcriptional regulator complement(1210989..1211864) Bacillus pumilus SAFR-032 5620402 YP_001486380.1 CDS racX NC_009848.1 1211888 1212586 R aspartate racemase complement(1211888..1212586) Bacillus pumilus SAFR-032 5620403 YP_001486381.1 CDS BPUM_1137 NC_009848.1 1212689 1213252 R acetyltransferase complement(1212689..1213252) Bacillus pumilus SAFR-032 5620404 YP_001486382.1 CDS BPUM_1138 NC_009848.1 1213262 1214158 R LysR family transcriptional regulator complement(1213262..1214158) Bacillus pumilus SAFR-032 5620405 YP_001486383.1 CDS BPUM_1139 NC_009848.1 1214286 1215440 D major facilitator superfamily transporter 1214286..1215440 Bacillus pumilus SAFR-032 5620406 YP_001486384.1 CDS BPUM_1140 NC_009848.1 1215482 1215901 D GNAT family acetyltransferase 1215482..1215901 Bacillus pumilus SAFR-032 5620407 YP_001486385.1 CDS rapA1 NC_009848.1 1216031 1217164 D aspartate phosphatase response regulator 1216031..1217164 Bacillus pumilus SAFR-032 5620408 YP_001486386.1 CDS phrA1 NC_009848.1 1217154 1217291 D RapA phosphatase inhibitor PhrA1 1217154..1217291 Bacillus pumilus SAFR-032 5620409 YP_001486387.1 CDS BPUM_1143 NC_009848.1 1217533 1217823 D hypothetical protein 1217533..1217823 Bacillus pumilus SAFR-032 5620410 YP_001486388.1 CDS yosT NC_009848.1 1217998 1218447 D DNA gyrase inhibitor 1217998..1218447 Bacillus pumilus SAFR-032 5620411 YP_001486389.1 CDS BPUM_1145 NC_009848.1 1218547 1219176 D hypothetical protein 1218547..1219176 Bacillus pumilus SAFR-032 5620412 YP_001486390.1 CDS alr2 NC_009848.1 1219341 1220522 D YncD; alanine racemase 1219341..1220522 Bacillus pumilus SAFR-032 5620413 YP_001486391.1 CDS BPUM_1147 NC_009848.1 1220604 1221716 R alcohol dehydrogenase complement(1220604..1221716) Bacillus pumilus SAFR-032 5620414 YP_001486392.1 CDS BPUM_1148 NC_009848.1 1221929 1222543 D TetR family transcriptional regulator 1221929..1222543 Bacillus pumilus SAFR-032 5620415 YP_001486393.1 CDS hag2 NC_009848.1 1222940 1223842 D structural flagella protein; flagellin 1222940..1223842 Bacillus pumilus SAFR-032 5620416 YP_001486394.1 CDS hag3 NC_009848.1 1224113 1225030 D structural flagella protein; flagellin 1224113..1225030 Bacillus pumilus SAFR-032 5620417 YP_001486395.1 CDS hag4 NC_009848.1 1225229 1226134 D structural flagella protein; flagellin 1225229..1226134 Bacillus pumilus SAFR-032 5620418 YP_001486396.1 CDS hag5 NC_009848.1 1226421 1227320 D structural flagella protein; flagellin 1226421..1227320 Bacillus pumilus SAFR-032 5620419 YP_001486397.1 CDS BPUM_1153 NC_009848.1 1227353 1228813 R FAD dependent dehydrogenase complement(1227353..1228813) Bacillus pumilus SAFR-032 5620420 YP_001486398.1 CDS BPUM_1154 NC_009848.1 1229059 1229862 D possible ABC superfamily ATP binding cassette transporter, binding protein; chemotaxis sensory transducer protein 1229059..1229862 Bacillus pumilus SAFR-032 5620421 YP_001486399.1 CDS BPUM_1155 NC_009848.1 1229899 1230294 R hypothetical protein complement(1229899..1230294) Bacillus pumilus SAFR-032 5620422 YP_001486400.1 CDS BPUM_1156 NC_009848.1 1230514 1231137 D hypothetical protein 1230514..1231137 Bacillus pumilus SAFR-032 5620423 YP_001486401.1 CDS xkdA NC_009848.1 1231154 1231702 R phage PBSX protein; hypothetical protein complement(1231154..1231702) Bacillus pumilus SAFR-032 5620424 YP_001486402.1 CDS xlyA NC_009848.1 1232013 1232912 D N-acetylmuramoyl-L-alanine amidase 1232013..1232912 Bacillus pumilus SAFR-032 5620425 YP_001486403.1 CDS spoIISB NC_009848.1 1233133 1233303 R stage II sporulation membrane protein SB complement(1233133..1233303) Bacillus pumilus SAFR-032 5620426 YP_001486404.1 CDS spoIISA NC_009848.1 1233278 1234048 R stage II sporulation membrane protein SA complement(1233278..1234048) Bacillus pumilus SAFR-032 5620427 YP_001486405.1 CDS pit NC_009848.1 1234185 1235183 R PiT family inorganic phosphate transporter complement(1234185..1235183) Bacillus pumilus SAFR-032 5620428 YP_001486406.1 CDS ykaA NC_009848.1 1235199 1235816 R phosphate transport regulator complement(1235199..1235816) Bacillus pumilus SAFR-032 5620429 YP_001486407.1 CDS BPUM_1163 NC_009848.1 1236023 1236481 R hypothetical protein complement(1236023..1236481) Bacillus pumilus SAFR-032 5620430 YP_001486408.1 CDS ggt NC_009848.1 1236709 1238460 D gamma-glutamyltransferase 1236709..1238460 Bacillus pumilus SAFR-032 5620431 YP_001486409.1 CDS BPUM_1165 NC_009848.1 1238495 1238701 D hypothetical protein 1238495..1238701 Bacillus pumilus SAFR-032 5620432 YP_001486410.1 CDS BPUM_1166 NC_009848.1 1238787 1239254 D PTS family fructose/mannitol porter component IIA 1238787..1239254 Bacillus pumilus SAFR-032 5620433 YP_001486411.1 CDS BPUM_1167 NC_009848.1 1239309 1240682 D PTS system galactitol (gat) transporter subunit IIC 1239309..1240682 Bacillus pumilus SAFR-032 5620434 YP_001486412.1 CDS BPUM_1168 NC_009848.1 1240702 1240980 D PTS family galactitol (gat) porter component IIB 1240702..1240980 Bacillus pumilus SAFR-032 5620435 YP_001486413.1 CDS BPUM_1169 NC_009848.1 1241042 1241488 D hypothetical protein 1241042..1241488 Bacillus pumilus SAFR-032 5620436 YP_001486414.1 CDS gutB NC_009848.1 1241485 1242516 D sorbitol dehydrogenase AdhC; L-iditol 2-dehydrogenase 1241485..1242516 Bacillus pumilus SAFR-032 5620437 YP_001486415.1 CDS BPUM_1171 NC_009848.1 1242699 1243682 D pyruvate/2-oxoglutarate dehydrogenase complex E1 component alpha subunit AcoA; pyruvate dehydrogenase (acetyl-transferring) E1 component alpha subunit 1242699..1243682 Bacillus pumilus SAFR-032 5620438 YP_001486416.1 CDS BPUM_1172 NC_009848.1 1243699 1244694 D pyruvate/2-oxoglutarate dehydrogenase complex, E1 component, beta subunit AcoB; pyruvate dehydrogenase (acetyl-transferring) E1 component beta subunit 1243699..1244694 Bacillus pumilus SAFR-032 5620439 YP_001486417.1 CDS BPUM_1173 NC_009848.1 1244712 1246037 D pyruvate/2-oxoglutarate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase AcoC; branched-chain alpha-keto acid dehydrogenase subunit E2 1244712..1246037 Bacillus pumilus SAFR-032 5620440 YP_001486418.1 CDS BPUM_1174 NC_009848.1 1246050 1247432 D pyruvate/2-oxoglutarate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase AcoL; dihydrolipoyl dehydrogenase 1246050..1247432 Bacillus pumilus SAFR-032 5620441 YP_001486419.1 CDS BPUM_1175 NC_009848.1 1247458 1248159 D short chain dehydrogenase 1247458..1248159 Bacillus pumilus SAFR-032 5620442 YP_001486420.1 CDS ywfD NC_009848.1 1248149 1248904 D bacilysin biosynthesis oxidoreductase BacC; short chain dehydrogenase 1248149..1248904 Bacillus pumilus SAFR-032 5620443 YP_001486421.1 CDS BPUM_1177 NC_009848.1 1249016 1249972 D transcriptional regulator 1249016..1249972 Bacillus pumilus SAFR-032 5620444 YP_001486422.1 CDS BPUM_1178 NC_009848.1 1250052 1250366 D hypothetical protein 1250052..1250366 Bacillus pumilus SAFR-032 5620445 YP_001486423.1 CDS potE NC_009848.1 1250537 1251862 R APC family amino acid-polyamine-organocation transporter complement(1250537..1251862) Bacillus pumilus SAFR-032 5620446 YP_001486424.1 CDS gloA NC_009848.1 1252181 1253137 D YkcA; lactoylglutathione lyase 1252181..1253137 Bacillus pumilus SAFR-032 5620447 YP_001486425.1 CDS htrA NC_009848.1 1253222 1254538 R S1 family serine protease; heat shock protein HtrA complement(1253222..1254538) Bacillus pumilus SAFR-032 5620448 YP_001486426.1 CDS BPUM_1182 NC_009848.1 1254521 1254694 D hypothetical protein 1254521..1254694 Bacillus pumilus SAFR-032 5620449 YP_001486427.1 CDS proC NC_009848.1 1254698 1255519 D catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 1254698..1255519 Bacillus pumilus SAFR-032 5620450 YP_001486428.1 CDS dppA NC_009848.1 1255703 1256533 D M55 family D-aminopeptidase 1255703..1256533 Bacillus pumilus SAFR-032 5620451 YP_001486429.1 CDS dppB NC_009848.1 1256552 1257487 D peptide ABC transporter membrane protein 1256552..1257487 Bacillus pumilus SAFR-032 5620452 YP_001486430.1 CDS dppC NC_009848.1 1257484 1258446 D peptide ABC transporter membrane protein 1257484..1258446 Bacillus pumilus SAFR-032 5620453 YP_001486431.1 CDS dppD NC_009848.1 1258454 1259461 D peptide ABC transporter ATP-binding protein 1258454..1259461 Bacillus pumilus SAFR-032 5620454 YP_001486432.1 CDS dppE NC_009848.1 1259461 1261083 D peptide ABC transporter ATP-binding protein 1259461..1261083 Bacillus pumilus SAFR-032 5620455 YP_001486433.1 CDS ykfA NC_009848.1 1261195 1262136 D U61 family carboxypeptidase 1261195..1262136 Bacillus pumilus SAFR-032 5620456 YP_001486434.1 CDS ykfB NC_009848.1 1262133 1263212 D L-alanine-DL-glutamate epimerase 1262133..1263212 Bacillus pumilus SAFR-032 5620457 YP_001486435.1 CDS ykfC NC_009848.1 1263212 1264129 D hydrolase 1263212..1264129 Bacillus pumilus SAFR-032 5620458 YP_001486436.1 CDS BPUM_1192 NC_009848.1 1264119 1265087 D YkfD; oligopeptide ABC transporter ATP-binding protein 1264119..1265087 Bacillus pumilus SAFR-032 5620459 YP_001486437.1 CDS BPUM_1193 NC_009848.1 1265126 1266007 R N-dimethylarginine dimethylaminohydrolase complement(1265126..1266007) Bacillus pumilus SAFR-032 5620460 YP_001486438.1 CDS BPUM_1194 NC_009848.1 1266184 1266708 D acyl-CoA thioester hydrolase 1266184..1266708 Bacillus pumilus SAFR-032 5620461 YP_001486439.1 CDS BPUM_1195 NC_009848.1 1266823 1267149 D PadR family transcriptional regulator 1266823..1267149 Bacillus pumilus SAFR-032 5620462 YP_001486440.1 CDS BPUM_1196 NC_009848.1 1267663 1267863 R hypothetical protein complement(1267663..1267863) Bacillus pumilus SAFR-032 5620463 YP_001486441.1 CDS BPUM_1197 NC_009848.1 1267931 1268146 D hypothetical protein 1267931..1268146 Bacillus pumilus SAFR-032 5620464 YP_001486442.1 CDS BPUM_1198 NC_009848.1 1268219 1268707 D hypothetical protein 1268219..1268707 Bacillus pumilus SAFR-032 5620465 YP_001486443.1 CDS BPUM_1199 NC_009848.1 1268726 1269271 D acetyltransferase 1268726..1269271 Bacillus pumilus SAFR-032 5620466 YP_001486444.1 CDS ada NC_009848.1 1269286 1270329 R methylated-DNA--protein-cysteine methyltransferase complement(1269286..1270329) Bacillus pumilus SAFR-032 5620467 YP_001486445.1 CDS BPUM_1201 NC_009848.1 1270501 1270635 R hypothetical protein complement(1270501..1270635) Bacillus pumilus SAFR-032 5620468 YP_001486446.1 CDS BPUM_1202 NC_009848.1 1271031 1271360 D DMT superfamily drug/metabolite transporter 1271031..1271360 Bacillus pumilus SAFR-032 5620469 YP_001486447.1 CDS ykkD NC_009848.1 1271357 1271671 D DMT superfamily drug/metabolite transporter 1271357..1271671 Bacillus pumilus SAFR-032 5620470 YP_001486448.1 CDS BPUM_1204 NC_009848.1 1271704 1271925 R hypothetical protein complement(1271704..1271925) Bacillus pumilus SAFR-032 5620471 YP_001486449.1 CDS purU NC_009848.1 1272052 1272954 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1272052..1272954 Bacillus pumilus SAFR-032 5620472 YP_001486450.1 CDS BPUM_1206 NC_009848.1 1273125 1273310 D hypothetical protein 1273125..1273310 Bacillus pumilus SAFR-032 5620473 YP_001486451.1 CDS proB NC_009848.1 1273273 1274370 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 1273273..1274370 Bacillus pumilus SAFR-032 5620474 YP_001486452.1 CDS proA NC_009848.1 1274383 1275633 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1274383..1275633 Bacillus pumilus SAFR-032 5620475 YP_001486453.1 CDS rapA2 NC_009848.1 1275756 1276892 D aspartate phosphatase response regulator 1275756..1276892 Bacillus pumilus SAFR-032 5620476 YP_001486454.1 CDS phrA2 NC_009848.1 1276882 1277016 D phosphatase RapA inhibitor PhrA2 1276882..1277016 Bacillus pumilus SAFR-032 5620477 YP_001486455.1 CDS ohrA NC_009848.1 1277367 1277795 D organic hydroperoxide resistance protein 1277367..1277795 Bacillus pumilus SAFR-032 5620478 YP_001486456.1 CDS ohrR NC_009848.1 1277828 1278274 R transcriptional regulator OhrR complement(1277828..1278274) Bacillus pumilus SAFR-032 5620479 YP_001486457.1 CDS ohrB NC_009848.1 1278437 1278853 D possible redox protein OsmC; organic hydroperoxide resistance protein 1278437..1278853 Bacillus pumilus SAFR-032 5620480 YP_001486458.1 CDS guaD NC_009848.1 1278910 1279380 R guanine deaminase complement(1278910..1279380) Bacillus pumilus SAFR-032 5620481 YP_001486459.1 CDS metE NC_009848.1 1279519 1281807 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(1279519..1281807) Bacillus pumilus SAFR-032 5620482 YP_001486460.1 CDS BPUM_1216 NC_009848.1 1281968 1282123 D hypothetical protein 1281968..1282123 Bacillus pumilus SAFR-032 5620483 YP_001486461.1 CDS ispA NC_009848.1 1282265 1283224 R serine protease complement(1282265..1283224) Bacillus pumilus SAFR-032 5620484 YP_001486462.1 CDS BPUM_1218 NC_009848.1 1283383 1283574 R hypothetical protein complement(1283383..1283574) Bacillus pumilus SAFR-032 5620485 YP_001486463.1 CDS ykoG NC_009848.1 1283671 1284357 D response regulator 1283671..1284357 Bacillus pumilus SAFR-032 5620486 YP_001486464.1 CDS ykoH NC_009848.1 1284361 1285710 D sensor histidine kinase 1284361..1285710 Bacillus pumilus SAFR-032 5620487 YP_001486465.1 CDS ykoI NC_009848.1 1285777 1286466 D hypothetical protein 1285777..1286466 Bacillus pumilus SAFR-032 5620488 YP_001486466.1 CDS ykoJ NC_009848.1 1286560 1287078 D hypothetical protein 1286560..1287078 Bacillus pumilus SAFR-032 5620489 YP_001486467.1 CDS ykzD NC_009848.1 1287364 1287504 D hypothetical protein 1287364..1287504 Bacillus pumilus SAFR-032 5620490 YP_001486468.1 CDS BPUM_1224 NC_009848.1 1287536 1287730 R hypothetical protein complement(1287536..1287730) Bacillus pumilus SAFR-032 5620491 YP_001486469.1 CDS ykoK NC_009848.1 1288009 1289367 D Mg2+/Co2+ transporter 1288009..1289367 Bacillus pumilus SAFR-032 5620492 YP_001486470.1 CDS BPUM_1226 NC_009848.1 1289469 1289867 D hypothetical protein 1289469..1289867 Bacillus pumilus SAFR-032 5620493 YP_001486471.1 CDS BPUM_1227 NC_009848.1 1289937 1290800 R LysR family transcriptional regulator complement(1289937..1290800) Bacillus pumilus SAFR-032 5620494 YP_001486472.1 CDS BPUM_1228 NC_009848.1 1291013 1291384 D hypothetical protein 1291013..1291384 Bacillus pumilus SAFR-032 5620495 YP_001486473.1 CDS tnrA NC_009848.1 1291964 1292293 R transcriptional regulator complement(1291964..1292293) Bacillus pumilus SAFR-032 5620497 YP_001486474.1 CDS ykzB NC_009848.1 1292480 1292638 D hypothetical protein 1292480..1292638 Bacillus pumilus SAFR-032 5620498 YP_001486475.1 CDS BPUM_1232 NC_009848.1 1292678 1292842 D hypothetical protein 1292678..1292842 Bacillus pumilus SAFR-032 5620499 YP_001486476.1 CDS ykoM NC_009848.1 1293201 1293662 D MarR family transcriptional regulator 1293201..1293662 Bacillus pumilus SAFR-032 5620500 YP_001486477.1 CDS ykoW NC_009848.1 1293693 1296116 R cell signaling protein complement(1293693..1296116) Bacillus pumilus SAFR-032 5620501 YP_001486478.1 CDS ykoX NC_009848.1 1296360 1296974 D DedA family membrane protein 1296360..1296974 Bacillus pumilus SAFR-032 5620502 YP_001486479.1 CDS ykoY NC_009848.1 1297257 1298048 D possible tellurium resistance protein TerC; hypothetical protein 1297257..1298048 Bacillus pumilus SAFR-032 5620503 YP_001486480.1 CDS sigI NC_009848.1 1298264 1299019 D Heat shock-induced; putative RNA polymerase sigma factor SigI 1298264..1299019 Bacillus pumilus SAFR-032 5620504 YP_001486481.1 CDS rsgI NC_009848.1 1299016 1300200 D YkrI; SigI regulator RsgI 1299016..1300200 Bacillus pumilus SAFR-032 5620505 YP_001486482.1 CDS sspD NC_009848.1 1300240 1300434 R small acid-soluble spore protein D complement(1300240..1300434) Bacillus pumilus SAFR-032 5620506 YP_001486483.1 CDS BPUM_1240 NC_009848.1 1300557 1301270 R YkrK; hypothetical protein complement(1300557..1301270) Bacillus pumilus SAFR-032 5620507 YP_001486484.1 CDS htpX NC_009848.1 1301551 1302450 D putative metalloprotease; heat shock protein HtpX 1301551..1302450 Bacillus pumilus SAFR-032 5620508 YP_001486485.1 CDS ykrM NC_009848.1 1302594 1303940 D Trk family K+ transporter NAD+ binding protein 1302594..1303940 Bacillus pumilus SAFR-032 5620509 YP_001486486.1 CDS BPUM_1243 NC_009848.1 1304038 1304556 D hypothetical protein 1304038..1304556 Bacillus pumilus SAFR-032 5620510 YP_001486487.1 CDS BPUM_1244 NC_009848.1 1304563 1304727 D hypothetical protein 1304563..1304727 Bacillus pumilus SAFR-032 5620511 YP_001486488.1 CDS BPUM_1245 NC_009848.1 1304720 1304887 D hypothetical protein 1304720..1304887 Bacillus pumilus SAFR-032 5620512 YP_001486489.1 CDS ykrP NC_009848.1 1304915 1305934 R acetyltransferase complement(1304915..1305934) Bacillus pumilus SAFR-032 5620513 YP_001486490.1 CDS kinE NC_009848.1 1306228 1308423 D sporulation sensor histidine kinase E 1306228..1308423 Bacillus pumilus SAFR-032 5620514 YP_001486491.1 CDS ogt NC_009848.1 1308425 1308916 D O-6-methylguanine-DNA-alkyltransferase; methylated-DNA-[protein]-cysteine S-methyltransferase 1308425..1308916 Bacillus pumilus SAFR-032 5620515 YP_001486492.1 CDS mtnA NC_009848.1 1309168 1310229 R isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase complement(1309168..1310229) Bacillus pumilus SAFR-032 5620516 YP_001486493.1 CDS mtnK NC_009848.1 1310236 1311429 R phosphorylates methylthioribose to form methylthioribose-1-phosphate; involved in methionine salvage pathway; methylthioribose kinase complement(1310236..1311429) Bacillus pumilus SAFR-032 5620517 YP_001486494.1 CDS mtnE NC_009848.1 1311833 1313023 D produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however; transaminase 1311833..1313023 Bacillus pumilus SAFR-032 5620518 YP_001486495.1 CDS mtnW NC_009848.1 1313242 1314492 D converts 2,3-diketo-5-methylthiopentyl-1-phosphate into 2-hydroxy 3-keto-5-methylthiopentenyl-1-phosphate; involved in methionine salvage; 2,3-diketo-5-methylthiopentyl-1-phosphate enolase 1313242..1314492 Bacillus pumilus SAFR-032 5620519 YP_001486496.1 CDS mtnX NC_009848.1 1314493 1315188 D converts 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate to 1,2-dihydroxy-3-keto-5-methylthiopentene; involved in methionine salvage; 2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphatase 1314493..1315188 Bacillus pumilus SAFR-032 5620520 YP_001486497.1 CDS mtnB NC_009848.1 1315152 1315790 D converts methylthioribulose-1-phosphate into 2,3-diketo-5-methylthiopentyl-1-phosphate; involved in methionine salvage; methylthioribulose-1-phosphate dehydratase 1315152..1315790 Bacillus pumilus SAFR-032 5620521 YP_001486498.1 CDS mtnZ NC_009848.1 1315807 1316337 D 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1315807..1316337 Bacillus pumilus SAFR-032 5620522 YP_001486499.1 CDS spo0E NC_009848.1 1316639 1316881 D negative sporulation regulatory phosphatase 1316639..1316881 Bacillus pumilus SAFR-032 5620523 YP_001486500.1 CDS kinD NC_009848.1 1316929 1318434 R sporulation sensor histidine kinase D complement(1316929..1318434) Bacillus pumilus SAFR-032 5620524 YP_001486501.1 CDS ykvE NC_009848.1 1318640 1319095 D MarR family transcriptional regulator 1318640..1319095 Bacillus pumilus SAFR-032 5620525 YP_001486502.1 CDS motB NC_009848.1 1319125 1319889 R with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB complement(1319125..1319889) Bacillus pumilus SAFR-032 5620526 YP_001486503.1 CDS motA NC_009848.1 1319882 1320676 R With Mot B forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine.; flagellar motor protein MotA complement(1319882..1320676) Bacillus pumilus SAFR-032 5620527 YP_001486504.1 CDS clpE NC_009848.1 1321051 1323153 R endopeptidase ClpE complement(1321051..1323153) Bacillus pumilus SAFR-032 5620528 YP_001486505.1 CDS ykvI NC_009848.1 1323399 1324442 D hypothetical protein 1323399..1324442 Bacillus pumilus SAFR-032 5620529 YP_001486506.1 CDS BPUM_1263 NC_009848.1 1324718 1325374 D transcriptional regulator ExsB; transcriptional regulator 1324718..1325374 Bacillus pumilus SAFR-032 5620530 YP_001486507.1 CDS queD NC_009848.1 1325375 1325815 D YkvK; 6-pyruvoyl-tetrahydropterin synthase 1325375..1325815 Bacillus pumilus SAFR-032 5620531 YP_001486508.1 CDS queE NC_009848.1 1325808 1326539 D organic radical activating enzyme; queuosine biosynthesis protein 1325808..1326539 Bacillus pumilus SAFR-032 5620532 YP_001486509.1 CDS queF NC_009848.1 1326555 1327052 D NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1326555..1327052 Bacillus pumilus SAFR-032 5620533 YP_001486510.1 CDS BPUM_1267 NC_009848.1 1327277 1327477 D hypothetical protein 1327277..1327477 Bacillus pumilus SAFR-032 5620534 YP_001486511.1 CDS BPUM_1268 NC_009848.1 1327519 1327737 D hypothetical protein 1327519..1327737 Bacillus pumilus SAFR-032 5620535 YP_001486512.1 CDS BPUM_1269 NC_009848.1 1327819 1328343 R acetyltransferase complement(1327819..1328343) Bacillus pumilus SAFR-032 5620536 YP_001486513.1 CDS BPUM_1270 NC_009848.1 1328490 1328678 R hypothetical protein complement(1328490..1328678) Bacillus pumilus SAFR-032 5620537 YP_001486514.1 CDS BPUM_1271 NC_009848.1 1328846 1329040 D hypothetical protein 1328846..1329040 Bacillus pumilus SAFR-032 5620538 YP_001486515.1 CDS ykvT NC_009848.1 1329348 1330001 D hypothetical protein 1329348..1330001 Bacillus pumilus SAFR-032 5620539 YP_001486516.1 CDS BPUM_1273 NC_009848.1 1330313 1331629 D hypothetical protein 1330313..1331629 Bacillus pumilus SAFR-032 5620540 YP_001486517.1 CDS spoIVH NC_009848.1 1331684 1332172 D thiol:disulfide interchange protein YkvV, thiol-disulfide oxidoreductase, StoA; stage IV spore cortex formation protein H 1331684..1332172 Bacillus pumilus SAFR-032 5620541 YP_001486518.1 CDS ykvW NC_009848.1 1332466 1334385 D P-ATPase superfamily P-type ATPase transporter 1332466..1334385 Bacillus pumilus SAFR-032 5620542 YP_001486519.1 CDS ykvY NC_009848.1 1334490 1335584 D M24B subfamily peptidase 1334490..1335584 Bacillus pumilus SAFR-032 5620543 YP_001486520.1 CDS BPUM_1277 NC_009848.1 1335875 1336903 D YkvZ; transcriptional regulator 1335875..1336903 Bacillus pumilus SAFR-032 5620544 YP_001486521.1 CDS glcT NC_009848.1 1336921 1337775 D transcriptional antiterminator 1336921..1337775 Bacillus pumilus SAFR-032 5620545 YP_001486522.1 CDS ptsG NC_009848.1 1337978 1340077 D protein-N(pi)-phosphohistidine--sugar phosphotransferase; PTS family glucose/glucoside (glc) porter component IIABC 1337978..1340077 Bacillus pumilus SAFR-032 5620546 YP_001486523.1 CDS ptsH NC_009848.1 1340171 1340437 D phosphocarrier protein HPr 1340171..1340437 Bacillus pumilus SAFR-032 5620547 YP_001486524.1 CDS ptsI NC_009848.1 1340437 1342155 D PTS family phosphoenolpyruvate (PEP) porter component enzyme I 1340437..1342155 Bacillus pumilus SAFR-032 5620548 YP_001486525.1 CDS splA NC_009848.1 1342268 1342495 D transcriptional regulator 1342268..1342495 Bacillus pumilus SAFR-032 5620549 YP_001486526.1 CDS splB NC_009848.1 1342578 1343606 D spore photoproduct (thymine dimer) lyase; spore photoproduct lyase 1342578..1343606 Bacillus pumilus SAFR-032 5620550 YP_001486527.1 CDS mcpC NC_009848.1 1343724 1345685 D methyl-accepting chemotaxis protein 1343724..1345685 Bacillus pumilus SAFR-032 5620551 YP_001486528.1 CDS BPUM_1285 NC_009848.1 1345760 1346545 D 3-oxoacyl-ACP reductase 1345760..1346545 Bacillus pumilus SAFR-032 5620552 YP_001486529.1 CDS ykwC NC_009848.1 1346559 1347431 D 3-hydroxyisobutyrate dehydrogenase 1346559..1347431 Bacillus pumilus SAFR-032 5620553 YP_001486530.1 CDS BPUM_1287 NC_009848.1 1347738 1349093 R transposase complement(1347738..1349093) Bacillus pumilus SAFR-032 5620554 YP_001486531.1 CDS ykwD NC_009848.1 1349200 1349994 R possible allergen V5/Tpx-1 protein; hypothetical protein complement(1349200..1349994) Bacillus pumilus SAFR-032 5620555 YP_001486532.1 CDS BPUM_1289 NC_009848.1 1350331 1352454 D penicillin-binding protein 1350331..1352454 Bacillus pumilus SAFR-032 5620556 YP_001486533.1 CDS kinA NC_009848.1 1352610 1354439 D sporulation sensor histidine kinase A 1352610..1354439 Bacillus pumilus SAFR-032 5620557 YP_001486534.1 CDS patA NC_009848.1 1354465 1355634 R aminotransferase A complement(1354465..1355634) Bacillus pumilus SAFR-032 5620558 YP_001486535.1 CDS BPUM_1292 NC_009848.1 1355926 1356810 D hypothetical protein 1355926..1356810 Bacillus pumilus SAFR-032 5620559 YP_001486536.1 CDS BPUM_1293 NC_009848.1 1356872 1357024 R hypothetical protein complement(1356872..1357024) Bacillus pumilus SAFR-032 5620560 YP_001486537.1 CDS BPUM_1294 NC_009848.1 1357326 1357865 D RDD family protein 1357326..1357865 Bacillus pumilus SAFR-032 5620561 YP_001486538.1 CDS yxiO NC_009848.1 1357991 1359301 D major facilitator superfamily transporter 1357991..1359301 Bacillus pumilus SAFR-032 5620562 YP_001486539.1 CDS cheV NC_009848.1 1359375 1360283 D chemotaxis protein CheV 1359375..1360283 Bacillus pumilus SAFR-032 5620563 YP_001486540.1 CDS ykyB NC_009848.1 1360317 1360778 R hypothetical protein complement(1360317..1360778) Bacillus pumilus SAFR-032 5620564 YP_001486541.1 CDS BPUM_1298 NC_009848.1 1361279 1361494 R hypothetical protein complement(1361279..1361494) Bacillus pumilus SAFR-032 5620565 YP_001486542.1 CDS BPUM_1299 NC_009848.1 1361661 1361837 D hypothetical protein 1361661..1361837 Bacillus pumilus SAFR-032 5620566 YP_001486543.1 CDS ykuC NC_009848.1 1361902 1363098 R major facilitator superfamily macrolide:cation symporter complement(1361902..1363098) Bacillus pumilus SAFR-032 5620567 YP_001486544.1 CDS ykuD NC_009848.1 1363253 1363750 R peptidoglycan binding protein complement(1363253..1363750) Bacillus pumilus SAFR-032 5620568 YP_001486545.1 CDS ykuE NC_009848.1 1363907 1364764 R phosphoesterase complement(1363907..1364764) Bacillus pumilus SAFR-032 5620569 YP_001486546.1 CDS ykuF NC_009848.1 1364901 1365665 D short chain dehydrogenase 1364901..1365665 Bacillus pumilus SAFR-032 5620570 YP_001486547.1 CDS ykuI NC_009848.1 1365730 1366950 D EAL domain-containing protein 1365730..1366950 Bacillus pumilus SAFR-032 5620571 YP_001486548.1 CDS BPUM_1305 NC_009848.1 1367243 1368139 D manganese (Mn) catalase 1367243..1368139 Bacillus pumilus SAFR-032 5620572 YP_001486549.1 CDS ykuJ NC_009848.1 1368323 1368565 D hypothetical protein 1368323..1368565 Bacillus pumilus SAFR-032 5620573 YP_001486550.1 CDS ykuK NC_009848.1 1368692 1369228 D hypothetical protein 1368692..1369228 Bacillus pumilus SAFR-032 5620574 YP_001486551.1 CDS ykzF NC_009848.1 1369378 1369569 D hypothetical protein 1369378..1369569 Bacillus pumilus SAFR-032 5620575 YP_001486552.1 CDS ykuL NC_009848.1 1369717 1370160 D hypothetical protein 1369717..1370160 Bacillus pumilus SAFR-032 5620576 YP_001486553.1 CDS ccpC NC_009848.1 1370256 1371137 D LysR family transcriptional regulator 1370256..1371137 Bacillus pumilus SAFR-032 5620577 YP_001486554.1 CDS BPUM_1311 NC_009848.1 1371224 1371646 D hypothetical protein 1371224..1371646 Bacillus pumilus SAFR-032 5620578 YP_001486555.1 CDS BPUM_1312 NC_009848.1 1371833 1372309 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 1371833..1372309 Bacillus pumilus SAFR-032 5620579 YP_001486556.1 CDS BPUM_1313 NC_009848.1 1372299 1373192 D BNR repeat-containing protein 1372299..1373192 Bacillus pumilus SAFR-032 5620580 YP_001486557.1 CDS BPUM_1314 NC_009848.1 1373209 1373667 D flavodoxin 1373209..1373667 Bacillus pumilus SAFR-032 5620581 YP_001486558.1 CDS dapD NC_009848.1 1373777 1374487 D 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 1373777..1374487 Bacillus pumilus SAFR-032 5620582 YP_001486559.1 CDS ykuR NC_009848.1 1374568 1375698 D hippurate hydrolase; M20D subfamily peptidase 1374568..1375698 Bacillus pumilus SAFR-032 5620583 YP_001486560.1 CDS ykuS NC_009848.1 1375749 1375991 D hypothetical protein 1375749..1375991 Bacillus pumilus SAFR-032 5620584 YP_001486561.1 CDS ykuT NC_009848.1 1376018 1376827 R MscS family small conductance mechanosenstive ion channel protein complement(1376018..1376827) Bacillus pumilus SAFR-032 5620585 YP_001486562.1 CDS ykuU NC_009848.1 1377099 1377641 D peroxiredoxin YkuU 1377099..1377641 Bacillus pumilus SAFR-032 5620586 YP_001486563.1 CDS ykuV NC_009848.1 1377724 1378182 D thioredoxin 1377724..1378182 Bacillus pumilus SAFR-032 5620587 YP_001486564.1 CDS rok NC_009848.1 1378653 1379234 D comK repressor 1378653..1379234 Bacillus pumilus SAFR-032 5620588 YP_001486565.1 CDS yknT NC_009848.1 1379285 1380202 R sigmaE regulated sporulation protein complement(1379285..1380202) Bacillus pumilus SAFR-032 5620589 YP_001486566.1 CDS mobA NC_009848.1 1380287 1380868 D molybdopterin-guanine dinucleotide biosynthesis protein MobA 1380287..1380868 Bacillus pumilus SAFR-032 5620590 YP_001486567.1 CDS moeB NC_009848.1 1380898 1381914 D catalyzes the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD or ThiS in the molybdopterin or thiamin pyrophosphate biosynthesis pathways; thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein 1380898..1381914 Bacillus pumilus SAFR-032 5620591 YP_001486568.1 CDS moeA NC_009848.1 1381924 1383201 D molybdopterin biosynthesis protein 1381924..1383201 Bacillus pumilus SAFR-032 5620592 YP_001486569.1 CDS mobB NC_009848.1 1383183 1383707 D molybdopterin-guanine dinucleotide biosynthesis protein MobB 1383183..1383707 Bacillus pumilus SAFR-032 5620593 YP_001486570.1 CDS moaE NC_009848.1 1383704 1384195 D molybdopterin converting factor large subunit 1383704..1384195 Bacillus pumilus SAFR-032 5620594 YP_001486571.1 CDS moaD NC_009848.1 1384188 1384421 D molybdopterin converting factor small subunit 1384188..1384421 Bacillus pumilus SAFR-032 5620595 YP_001486572.1 CDS BPUM_1329 NC_009848.1 1384468 1384845 R hypothetical protein complement(1384468..1384845) Bacillus pumilus SAFR-032 5620596 YP_001486573.1 CDS yknW NC_009848.1 1385362 1385988 D hypothetical protein 1385362..1385988 Bacillus pumilus SAFR-032 5620597 YP_001486574.1 CDS yknX NC_009848.1 1385998 1387104 D hypothetical protein 1385998..1387104 Bacillus pumilus SAFR-032 5620598 YP_001486575.1 CDS yknY NC_009848.1 1387101 1387802 D ABC transporter ATP-binding protein 1387101..1387802 Bacillus pumilus SAFR-032 5620599 YP_001486576.1 CDS yknZ NC_009848.1 1387789 1388982 D ABC transporter ATP-binding protein 1387789..1388982 Bacillus pumilus SAFR-032 5620600 YP_001486577.1 CDS fruR NC_009848.1 1389304 1390059 D DeoR family transcriptional regulator 1389304..1390059 Bacillus pumilus SAFR-032 5620601 YP_001486578.1 CDS fruK NC_009848.1 1390056 1390967 D 1-phosphofructokinase 1390056..1390967 Bacillus pumilus SAFR-032 5620602 YP_001486579.1 CDS fruA NC_009848.1 1390981 1392876 D PTS family fructose/mannitol porter component IIBC 1390981..1392876 Bacillus pumilus SAFR-032 5620603 YP_001486580.1 CDS sipT NC_009848.1 1393055 1393660 D signal peptidase I 1393055..1393660 Bacillus pumilus SAFR-032 5620604 YP_001486581.1 CDS ykoA NC_009848.1 1393725 1394000 R hypothetical protein complement(1393725..1394000) Bacillus pumilus SAFR-032 5620605 YP_001486582.1 CDS ykpA NC_009848.1 1394144 1395763 D ABC transporter ATP-binding protein 1394144..1395763 Bacillus pumilus SAFR-032 5620606 YP_001486583.1 CDS BPUM_1340 NC_009848.1 1395788 1396003 D hypothetical protein 1395788..1396003 Bacillus pumilus SAFR-032 5620607 YP_001486584.1 CDS ampS NC_009848.1 1396000 1397232 R aminopeptidase complement(1396000..1397232) Bacillus pumilus SAFR-032 5620608 YP_001486585.1 CDS ykpC NC_009848.1 1397339 1397470 R hypothetical protein complement(1397339..1397470) Bacillus pumilus SAFR-032 5620609 YP_001486586.1 CDS mreBH NC_009848.1 1397545 1398552 R rod-share determining protein MreBH complement(1397545..1398552) Bacillus pumilus SAFR-032 5620610 YP_001486587.1 CDS abh NC_009848.1 1398828 1399106 D transcriptional regulator of stationary/sporulation gene expression YlxT YzaA; SpoVT/AbrB family transcriptional regulator 1398828..1399106 Bacillus pumilus SAFR-032 5620611 YP_001486588.1 CDS kinC NC_009848.1 1399198 1400559 D sensor histidine kinase 1399198..1400559 Bacillus pumilus SAFR-032 5620612 YP_001486589.1 CDS BPUM_1346 NC_009848.1 1400564 1401400 D hypothetical protein 1400564..1401400 Bacillus pumilus SAFR-032 5620613 YP_001486590.1 CDS ktrC NC_009848.1 1401438 1402106 D Trk family K+ transporter NAD+ binding protein 1401438..1402106 Bacillus pumilus SAFR-032 5620614 YP_001486591.1 CDS adeC NC_009848.1 1402369 1404099 D adenine deaminase 1402369..1404099 Bacillus pumilus SAFR-032 5620615 YP_001486592.1 CDS ykqC NC_009848.1 1404199 1405866 R metallo-beta lactamase superfamily hydrolase complement(1404199..1405866) Bacillus pumilus SAFR-032 5620616 YP_001486593.1 CDS ykzG NC_009848.1 1405872 1406081 R hypothetical protein complement(1405872..1406081) Bacillus pumilus SAFR-032 5620617 YP_001486594.1 CDS ykrA NC_009848.1 1406477 1407256 D HAD hydrolase 1406477..1407256 Bacillus pumilus SAFR-032 5620618 YP_001486595.1 CDS def NC_009848.1 1407496 1408053 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(1407496..1408053) Bacillus pumilus SAFR-032 5620619 YP_001486596.1 CDS BPUM_1353 NC_009848.1 1408166 1408534 R hypothetical protein complement(1408166..1408534) Bacillus pumilus SAFR-032 5620620 YP_001486597.1 CDS ykyA NC_009848.1 1408589 1409257 D YkrC; lipoprotein 1408589..1409257 Bacillus pumilus SAFR-032 5620621 YP_001486598.1 CDS pdhA NC_009848.1 1409668 1410783 D pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 1409668..1410783 Bacillus pumilus SAFR-032 5620622 YP_001486599.1 CDS pdhB NC_009848.1 1410787 1411764 D AceB; pyruvate dehydrogenase (acetyl-transferring) E1 beta subunit 1410787..1411764 Bacillus pumilus SAFR-032 5620623 YP_001486600.1 CDS pdhC NC_009848.1 1411872 1413215 D AceC; branched-chain alpha-keto acid dehydrogenase subunit E2 1411872..1413215 Bacillus pumilus SAFR-032 5620624 YP_001486601.1 CDS pdhD NC_009848.1 1413220 1414632 D E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1413220..1414632 Bacillus pumilus SAFR-032 5620625 YP_001486602.1 CDS slp NC_009848.1 1414749 1415102 R Pal; peptidoglycan-associated protein complement(1414749..1415102) Bacillus pumilus SAFR-032 5620626 YP_001486603.1 CDS BPUM_1360 NC_009848.1 1415101 1415334 D hypothetical protein 1415101..1415334 Bacillus pumilus SAFR-032 5620627 YP_001486604.1 CDS speA NC_009848.1 1415609 1417099 R Cad; lysine decarboxylase complement(1415609..1417099) Bacillus pumilus SAFR-032 5620628 YP_001486605.1 CDS yktA NC_009848.1 1417272 1417541 D hypothetical protein 1417272..1417541 Bacillus pumilus SAFR-032 5620629 YP_001486606.1 CDS BPUM_1363 NC_009848.1 1419100 1419735 R YktB; hypothetical protein complement(1419100..1419735) Bacillus pumilus SAFR-032 5620630 YP_001486607.1 CDS BPUM_1364 NC_009848.1 1420024 1420212 D hypothetical protein 1420024..1420212 Bacillus pumilus SAFR-032 5620631 YP_001486608.1 CDS suhB NC_009848.1 1420346 1421152 D inositol-phosphate phosphatase 1420346..1421152 Bacillus pumilus SAFR-032 5620632 YP_001486609.1 CDS ylaE NC_009848.1 1421309 1421944 R hypothetical protein complement(1421309..1421944) Bacillus pumilus SAFR-032 5620633 YP_001486610.1 CDS ylaF NC_009848.1 1422218 1422397 R hypothetical protein complement(1422218..1422397) Bacillus pumilus SAFR-032 5620634 YP_001486611.1 CDS typA NC_009848.1 1422511 1424349 D YlaG; GTP-binding protein 1422511..1424349 Bacillus pumilus SAFR-032 5620635 YP_001486612.1 CDS ylaH NC_009848.1 1424404 1424727 D hypothetical protein 1424404..1424727 Bacillus pumilus SAFR-032 5620636 YP_001486613.1 CDS ylaI NC_009848.1 1424759 1424989 R hypothetical protein complement(1424759..1424989) Bacillus pumilus SAFR-032 5620637 YP_001486614.1 CDS ylaJ NC_009848.1 1425091 1425708 R sporulation lipoprotein YlaJ complement(1425091..1425708) Bacillus pumilus SAFR-032 5620638 YP_001486615.1 CDS phoH1 NC_009848.1 1425879 1427171 D YlaK; phosphate starvation-induced protein PhoH 1425879..1427171 Bacillus pumilus SAFR-032 5620639 YP_001486616.1 CDS ylaL NC_009848.1 1427187 1427666 R hypothetical protein complement(1427187..1427666) Bacillus pumilus SAFR-032 5620640 YP_001486617.1 CDS gls NC_009848.1 1427787 1428716 D catalyzes the formation of glutamate from glutamine; glutaminase 1427787..1428716 Bacillus pumilus SAFR-032 5620641 YP_001486618.1 CDS ylaN NC_009848.1 1428839 1429120 D depletion of this protein in Bacillus subtilis results in defects in cell morphology; crystal structure of Staphylococcus protein shows homodimer; putative ligand binding protein; hypothetical protein 1428839..1429120 Bacillus pumilus SAFR-032 5620642 YP_001486619.1 CDS ftsW NC_009848.1 1429327 1430538 D cell division protein FtsW 1429327..1430538 Bacillus pumilus SAFR-032 5620643 YP_001486620.1 CDS pycA NC_009848.1 1430619 1434065 D biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 1430619..1434065 Bacillus pumilus SAFR-032 5620644 YP_001486621.1 CDS phrB NC_009848.1 1434198 1435598 D deoxyribodipyrimidine photo-lyase 1434198..1435598 Bacillus pumilus SAFR-032 5620645 YP_001486622.1 CDS ctaA NC_009848.1 1435639 1436562 R heme-containing membrane protein; cytochrome c oxidase assembly protein complement(1435639..1436562) Bacillus pumilus SAFR-032 5620646 YP_001486623.1 CDS ctaB NC_009848.1 1436956 1437873 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 1436956..1437873 Bacillus pumilus SAFR-032 5620647 YP_001486624.1 CDS ctaC NC_009848.1 1438152 1439219 D cytochrome-c oxidase subunit II 1438152..1439219 Bacillus pumilus SAFR-032 5620648 YP_001486625.1 CDS ctaD NC_009848.1 1439391 1441262 D cytochrome-c oxidase subunit I 1439391..1441262 Bacillus pumilus SAFR-032 5620649 YP_001486626.1 CDS ctaE NC_009848.1 1441262 1441882 D cytochrome-c oxidase subunit III 1441262..1441882 Bacillus pumilus SAFR-032 5620650 YP_001486627.1 CDS ctaF NC_009848.1 1441885 1442214 D cytochrome-c oxidase subunit IV 1441885..1442214 Bacillus pumilus SAFR-032 5620651 YP_001486628.1 CDS ctaG NC_009848.1 1442245 1443123 D cytochrome c oxidase subunit 1442245..1443123 Bacillus pumilus SAFR-032 5620652 YP_001486629.1 CDS ylbA NC_009848.1 1443155 1443520 R hypothetical protein complement(1443155..1443520) Bacillus pumilus SAFR-032 5620653 YP_001486630.1 CDS ylbB NC_009848.1 1443682 1444104 D cystathionine beta-synthase 1443682..1444104 Bacillus pumilus SAFR-032 5620654 YP_001486631.1 CDS ylbC NC_009848.1 1444229 1445272 D hypothetical protein 1444229..1445272 Bacillus pumilus SAFR-032 5620655 YP_001486632.1 CDS ylbD NC_009848.1 1445381 1445794 D hypothetical protein 1445381..1445794 Bacillus pumilus SAFR-032 5620656 YP_001486633.1 CDS ylbE NC_009848.1 1445814 1446062 D hypothetical protein 1445814..1446062 Bacillus pumilus SAFR-032 5620657 YP_001486634.1 CDS BPUM_1391 NC_009848.1 1446135 1446542 D hypothetical protein 1446135..1446542 Bacillus pumilus SAFR-032 5620658 YP_001486635.1 CDS ylbF NC_009848.1 1446600 1447049 D hypothetical protein 1446600..1447049 Bacillus pumilus SAFR-032 5620659 YP_001486636.1 CDS ylbG NC_009848.1 1447116 1447388 D hypothetical protein 1447116..1447388 Bacillus pumilus SAFR-032 5620660 YP_001486637.1 CDS ylbH NC_009848.1 1447699 1448256 D adenine-specific DNA methylase; site-specific DNA-methyltransferase (adenine-specific) 1447699..1448256 Bacillus pumilus SAFR-032 5620661 YP_001486638.1 CDS coaD NC_009848.1 1448260 1448742 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 1448260..1448742 Bacillus pumilus SAFR-032 5620662 YP_001486639.1 CDS ylbJ NC_009848.1 1448756 1449964 R sporulation integral membrane protein YlbJ complement(1448756..1449964) Bacillus pumilus SAFR-032 5620663 YP_001486640.1 CDS ylbK NC_009848.1 1450123 1450902 D possible MFS family major facilitator transporter; alpha/beta fold family hydrolase 1450123..1450902 Bacillus pumilus SAFR-032 5620664 YP_001486641.1 CDS ylbL NC_009848.1 1450907 1451935 D PDZ domain protein YlbL; peptidase 1450907..1451935 Bacillus pumilus SAFR-032 5620665 YP_001486642.2 CDS ylbM NC_009848.1 1451974 1453218 R hypothetical protein complement(1451974..1453218) Bacillus pumilus SAFR-032 5620666 YP_001486643.1 CDS ylbN NC_009848.1 1453425 1453943 D hypothetical protein 1453425..1453943 Bacillus pumilus SAFR-032 5620667 YP_001486644.1 CDS rpmF NC_009848.1 1453965 1454138 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1453965..1454138 Bacillus pumilus SAFR-032 5620668 YP_001486645.1 CDS gerR NC_009848.1 1454277 1454816 D DNA binding protein YlbO; putative spore coat protein regulator protein YlbO 1454277..1454816 Bacillus pumilus SAFR-032 5620669 YP_001486646.1 CDS ylbP NC_009848.1 1454863 1455342 R hypothetical protein complement(1454863..1455342) Bacillus pumilus SAFR-032 5620670 YP_001486647.1 CDS ylbQ NC_009848.1 1455551 1456450 D ketopantoate reductase; catalyzes the NADPH reduction of ketopantoate to pantoate; functions in pantothenate (vitamin B5) biosynthesis; 2-dehydropantoate 2-reductase 1455551..1456450 Bacillus pumilus SAFR-032 5620671 YP_001486648.1 CDS yllA NC_009848.1 1456515 1458134 D hypothetical protein 1456515..1458134 Bacillus pumilus SAFR-032 5620672 YP_001486649.1 CDS mraZ NC_009848.1 1458308 1458694 D YllB; hypothetical protein 1458308..1458694 Bacillus pumilus SAFR-032 5620673 YP_001486650.1 CDS mraW NC_009848.1 1458761 1459693 D S-adenosyl-methyltransferase MraW 1458761..1459693 Bacillus pumilus SAFR-032 5620674 YP_001486651.1 CDS ftsL NC_009848.1 1459731 1460078 D cell division protein 1459731..1460078 Bacillus pumilus SAFR-032 5620675 YP_001486652.1 CDS ftsI NC_009848.1 1460086 1462236 D penicillin binding protein PbpB; peptidoglycan glycosyltransferase 1460086..1462236 Bacillus pumilus SAFR-032 5620676 YP_001486653.1 CDS spoVD NC_009848.1 1462363 1464282 D stage V sporulation protein D 1462363..1464282 Bacillus pumilus SAFR-032 5620677 YP_001486654.1 CDS murE NC_009848.1 1464489 1465970 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 1464489..1465970 Bacillus pumilus SAFR-032 5620678 YP_001486655.1 CDS mraY NC_009848.1 1466106 1467080 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 1466106..1467080 Bacillus pumilus SAFR-032 5620679 YP_001486656.1 CDS murD NC_009848.1 1467081 1468436 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 1467081..1468436 Bacillus pumilus SAFR-032 5620680 YP_001486657.1 CDS spoVE NC_009848.1 1468496 1469596 D stage V sporulation protein E 1468496..1469596 Bacillus pumilus SAFR-032 5620681 YP_001486658.1 CDS murG NC_009848.1 1469794 1470888 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 1469794..1470888 Bacillus pumilus SAFR-032 5620682 YP_001486659.1 CDS murB NC_009848.1 1470920 1471831 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1470920..1471831 Bacillus pumilus SAFR-032 5620683 YP_001486660.1 CDS divIB NC_009848.1 1471959 1472738 D cell-division initiation protein 1471959..1472738 Bacillus pumilus SAFR-032 5620684 YP_001486661.1 CDS ylxW NC_009848.1 1472735 1473424 D hypothetical protein 1472735..1473424 Bacillus pumilus SAFR-032 5620685 YP_001486662.1 CDS ylxX NC_009848.1 1473445 1474170 D hypothetical protein 1473445..1474170 Bacillus pumilus SAFR-032 5620686 YP_001486663.1 CDS sbp NC_009848.1 1474170 1474538 D hypothetical protein 1474170..1474538 Bacillus pumilus SAFR-032 5620687 YP_001486664.1 CDS ftsA NC_009848.1 1474698 1476020 D cell division ATP-binding protein FtsA 1474698..1476020 Bacillus pumilus SAFR-032 5620688 YP_001486665.1 CDS ftsZ NC_009848.1 1476054 1477199 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 1476054..1477199 Bacillus pumilus SAFR-032 5620689 YP_001486666.1 CDS BPUM_1423 NC_009848.1 1477491 1480967 D bifunctional bacillopeptidase F/hypothetical protein; peptidase 1477491..1480967 Bacillus pumilus SAFR-032 5620690 YP_001486667.1 CDS BPUM_1424 NC_009848.1 1480997 1481188 D hypothetical protein 1480997..1481188 Bacillus pumilus SAFR-032 5620691 YP_001486668.1 CDS spoIIGA NC_009848.1 1481201 1482130 D stage II sporulation U4 family membrane protease 1481201..1482130 Bacillus pumilus SAFR-032 5620692 YP_001486669.1 CDS sigE NC_009848.1 1482189 1482908 D sigma-29; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell at the onset of sporulation; sporulation sigma factor SigE 1482189..1482908 Bacillus pumilus SAFR-032 5620693 YP_001486670.1 CDS sigG NC_009848.1 1483051 1483830 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed after engulfment; this factor is involved in the transcription of small acid-soluble proteins involved in protecting the forespore chromatin; sporulation sigma factor SigG 1483051..1483830 Bacillus pumilus SAFR-032 5620694 YP_001486671.1 CDS BPUM_1428 NC_009848.1 1483982 1484920 D transcriptional regulator 1483982..1484920 Bacillus pumilus SAFR-032 5620695 YP_001486672.1 CDS BPUM_1429 NC_009848.1 1485165 1486409 D homoserine dehydrogenase 1485165..1486409 Bacillus pumilus SAFR-032 5620696 YP_001486673.1 CDS BPUM_1430 NC_009848.1 1486422 1486853 D hypothetical protein 1486422..1486853 Bacillus pumilus SAFR-032 5620697 YP_001486674.1 CDS BPUM_1431 NC_009848.1 1486872 1487402 D PTS family glucitol (Glu) porter component IIC 1486872..1487402 Bacillus pumilus SAFR-032 5620698 YP_001486675.1 CDS BPUM_1432 NC_009848.1 1487416 1488426 D PTS family glucitol (Glu) porter component IIB 1487416..1488426 Bacillus pumilus SAFR-032 5620699 YP_001486676.1 CDS BPUM_1433 NC_009848.1 1488453 1488809 D PTS family glucitol (Glu) porter component IIA 1488453..1488809 Bacillus pumilus SAFR-032 5620700 YP_001486677.1 CDS ylmA NC_009848.1 1488936 1489715 D ABC transporter ATP-binding protein 1488936..1489715 Bacillus pumilus SAFR-032 5620701 YP_001486678.1 CDS ylmC NC_009848.1 1489795 1490031 D hypothetical protein 1489795..1490031 Bacillus pumilus SAFR-032 5620702 YP_001486679.1 CDS ylmD NC_009848.1 1490268 1491107 D hypothetical protein 1490268..1491107 Bacillus pumilus SAFR-032 5620703 YP_001486680.1 CDS ylmE NC_009848.1 1491114 1491803 D possible Class III pyridoxal 5; hypothetical protein 1491114..1491803 Bacillus pumilus SAFR-032 5620704 YP_001486681.1 CDS ylmF NC_009848.1 1491805 1492263 D hypothetical protein 1491805..1492263 Bacillus pumilus SAFR-032 5620705 YP_001486682.1 CDS ylmG NC_009848.1 1492270 1492551 D hypothetical protein 1492270..1492551 Bacillus pumilus SAFR-032 5620706 YP_001486683.1 CDS ylmH NC_009848.1 1492605 1493381 D possible RNA-binding protein; hypothetical protein 1492605..1493381 Bacillus pumilus SAFR-032 5620707 YP_001486684.1 CDS divIVA NC_009848.1 1493408 1493902 D cell-division initiation protein 1493408..1493902 Bacillus pumilus SAFR-032 5620708 YP_001486685.1 CDS ileS NC_009848.1 1494253 1497018 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1494253..1497018 Bacillus pumilus SAFR-032 5620709 YP_001486686.1 CDS ylyA NC_009848.1 1497179 1497553 D possible suppressor protein DnaK; hypothetical protein 1497179..1497553 Bacillus pumilus SAFR-032 5620710 YP_001486687.1 CDS lspA NC_009848.1 1497648 1498115 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1497648..1498115 Bacillus pumilus SAFR-032 5620711 YP_001486688.1 CDS ylyB NC_009848.1 1498112 1499026 D 23S RNA-specific pseudouridylate synthase RluA; pseudouridylate synthase 1498112..1499026 Bacillus pumilus SAFR-032 5620712 YP_001486689.1 CDS pyrR NC_009848.1 1499198 1499740 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR/uracil phosphoribosyltransferase 1499198..1499740 Bacillus pumilus SAFR-032 5620713 YP_001486690.1 CDS pyrP NC_009848.1 1499895 1501223 D NCS2 family nucleobase:cation symporter-2 1499895..1501223 Bacillus pumilus SAFR-032 5620714 YP_001486691.1 CDS pyrB NC_009848.1 1501353 1502276 D catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit 1501353..1502276 Bacillus pumilus SAFR-032 5620715 YP_001486692.1 CDS pyrC NC_009848.1 1502260 1503546 D dihydroorotase 1502260..1503546 Bacillus pumilus SAFR-032 5620716 YP_001486693.1 CDS pyrAA NC_009848.1 1503543 1504637 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 1503543..1504637 Bacillus pumilus SAFR-032 5620717 YP_001486694.1 CDS carB NC_009848.1 1504622 1507837 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 1504622..1507837 Bacillus pumilus SAFR-032 5620718 YP_001486695.1 CDS pyrK NC_009848.1 1507834 1508610 D responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the pyrD subunit to the ultimate electron acceptor NAD(+); dihydroorotate dehydrogenase electron transfer subunit 1507834..1508610 Bacillus pumilus SAFR-032 5620719 YP_001486696.1 CDS pyrD NC_009848.1 1508604 1509536 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway, using a flavin nucleotide as an essential cofactor; subclass 1B is a heterotetramer consisting of two PyrDB subunits, similar to the PyrDA subunits and two PyrK subunits; dihydroorotate dehydrogenase 1B 1508604..1509536 Bacillus pumilus SAFR-032 5620720 YP_001486697.1 CDS pyrF NC_009848.1 1509508 1510212 D type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1509508..1510212 Bacillus pumilus SAFR-032 5620721 YP_001486698.1 CDS pyrE NC_009848.1 1510220 1510858 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 1510220..1510858 Bacillus pumilus SAFR-032 5620722 YP_001486699.1 CDS cysH NC_009848.1 1511336 1512037 D phosphoadenylyl-sulfate reductase (thioredoxin) 1511336..1512037 Bacillus pumilus SAFR-032 5620723 YP_001486700.1 CDS cysP NC_009848.1 1512051 1513115 D PiT family inorganic phosphate transporter 1512051..1513115 Bacillus pumilus SAFR-032 5620724 YP_001486701.1 CDS sat NC_009848.1 1513171 1514307 D ATP sulfurylase; ATPS; converts ATP and sulfate to 5'phosphosulfate and pyrophosphate; in some organisms this enzyme is involved in the incorporation of inorganic sulfate while in others it is involved in the production of ATP in the reverse direction; the enzyme from Thermus thermophilus is dimeric and binds a zinc ion that is coordinated by cysteine and histidine residues that are not found in all related proteins but is found in some thermophilic organisms; sulfate adenylyltransferase 1513171..1514307 Bacillus pumilus SAFR-032 5620725 YP_001486702.1 CDS cysC NC_009848.1 1514322 1514915 D adenylylsulfate kinase 1514322..1514915 Bacillus pumilus SAFR-032 5620726 YP_001486703.1 CDS cysG NC_009848.1 1514945 1515700 D YlnD; uroporphyrin-III C-methyltransferase 1514945..1515700 Bacillus pumilus SAFR-032 5620727 YP_001486704.1 CDS cbiX NC_009848.1 1515776 1516561 D YlnE; sirohydrochlorin cobaltochelatase 1515776..1516561 Bacillus pumilus SAFR-032 5620728 YP_001486705.1 CDS BPUM_1462 NC_009848.1 1516542 1517045 D ylnF; precorrin-2 dehydrogenase 1516542..1517045 Bacillus pumilus SAFR-032 5620729 YP_001486706.1 CDS BPUM_1463 NC_009848.1 1517076 1518785 R YloA; fibronectin binding protein A complement(1517076..1518785) Bacillus pumilus SAFR-032 5620730 YP_001486707.1 CDS yloB NC_009848.1 1518950 1521625 D P-ATPase superfamily P-type ATPase cation transporter 1518950..1521625 Bacillus pumilus SAFR-032 5620731 YP_001486708.1 CDS yloC NC_009848.1 1521709 1522584 D hypothetical protein 1521709..1522584 Bacillus pumilus SAFR-032 5620732 YP_001486709.1 CDS BPUM_1466 NC_009848.1 1522661 1522930 D YlzA; hypothetical protein 1522661..1522930 Bacillus pumilus SAFR-032 5620733 YP_001486710.1 CDS gmk NC_009848.1 1522940 1523554 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1522940..1523554 Bacillus pumilus SAFR-032 5620734 YP_001486711.1 CDS rpoZ NC_009848.1 1523558 1523761 D Promotes RNA polymerase assembly; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 1523558..1523761 Bacillus pumilus SAFR-032 5620735 YP_001486712.1 CDS coaBC NC_009848.1 1523879 1525096 D YloI; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 1523879..1525096 Bacillus pumilus SAFR-032 5620736 YP_001486713.1 CDS priA NC_009848.1 1525093 1527501 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1525093..1527501 Bacillus pumilus SAFR-032 5620737 YP_001486714.1 CDS def NC_009848.1 1527517 1527999 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 1527517..1527999 Bacillus pumilus SAFR-032 5620738 YP_001486715.1 CDS fmt NC_009848.1 1528005 1528958 D methionyl-tRNA formyltransferase 1528005..1528958 Bacillus pumilus SAFR-032 5620739 YP_001486716.1 CDS rsmB NC_009848.1 1528945 1530288 D sun protein YloM; rRNA SAM-dependent methyltransferase RmsB 1528945..1530288 Bacillus pumilus SAFR-032 5620740 YP_001486717.1 CDS BPUM_1474 NC_009848.1 1530292 1531374 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1530292..1531374 Bacillus pumilus SAFR-032 5620741 YP_001486718.1 CDS prpC NC_009848.1 1531378 1532148 D serine/threonine phosphatase 1531378..1532148 Bacillus pumilus SAFR-032 5620742 YP_001486719.1 CDS prkC NC_009848.1 1532142 1534097 D serine/threonine kinase 1532142..1534097 Bacillus pumilus SAFR-032 5620743 YP_001486720.1 CDS yloQ NC_009848.1 1534110 1535006 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 1534110..1535006 Bacillus pumilus SAFR-032 5620744 YP_001486721.1 CDS rpe NC_009848.1 1535010 1535660 D catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase 1535010..1535660 Bacillus pumilus SAFR-032 5620745 YP_001486722.1 CDS yloS NC_009848.1 1535721 1536365 D thiamin pyrophosphokinase 1535721..1536365 Bacillus pumilus SAFR-032 5620746 YP_001486723.1 CDS spoVM NC_009848.1 1536437 1536517 D involved in the production of the spore cortex and coat; stage V sporulation protein M 1536437..1536517 Bacillus pumilus SAFR-032 5620747 YP_001486724.1 CDS rpmB NC_009848.1 1536587 1536775 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(1536587..1536775) Bacillus pumilus SAFR-032 5620748 YP_001486725.1 CDS BPUM_1482 NC_009848.1 1537047 1537409 D hypothetical protein 1537047..1537409 Bacillus pumilus SAFR-032 5620749 YP_001486726.1 CDS BPUM_1483 NC_009848.1 1537425 1539104 D glycerone kinase 1537425..1539104 Bacillus pumilus SAFR-032 5620750 YP_001486727.1 CDS sdaAB NC_009848.1 1539254 1539916 D L-serine ammonia-lyase beta chain 1539254..1539916 Bacillus pumilus SAFR-032 5620751 YP_001486728.1 CDS sdaAA NC_009848.1 1539937 1540839 D L-serine ammonia-lyase alpha chain 1539937..1540839 Bacillus pumilus SAFR-032 5620752 YP_001486729.1 CDS recG NC_009848.1 1540817 1542865 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1540817..1542865 Bacillus pumilus SAFR-032 5620753 YP_001486730.1 CDS ylpC NC_009848.1 1542978 1543544 D negative regulator of genes involved in fatty acid and phospholipid biosynthesis for gram positive bacteria; fatty acid biosynthesis transcriptional regulator 1542978..1543544 Bacillus pumilus SAFR-032 5620754 YP_001486731.1 CDS plsX NC_009848.1 1543560 1544558 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1543560..1544558 Bacillus pumilus SAFR-032 5620755 YP_001486732.1 CDS fabD NC_009848.1 1544574 1545518 D ACP S-malonyltransferase 1544574..1545518 Bacillus pumilus SAFR-032 5620756 YP_001486733.1 CDS fabG1 NC_009848.1 1545518 1546261 D 3-oxoacyl-ACP reductase 1545518..1546261 Bacillus pumilus SAFR-032 5620757 YP_001486734.1 CDS acpP NC_009848.1 1546343 1546576 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1546343..1546576 Bacillus pumilus SAFR-032 5620758 YP_001486735.1 CDS rnc NC_009848.1 1546761 1547504 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1546761..1547504 Bacillus pumilus SAFR-032 5620759 YP_001486736.1 CDS smc NC_009848.1 1547610 1551170 D chromosome segregation protein Smc 1547610..1551170 Bacillus pumilus SAFR-032 5620760 YP_001486737.1 CDS ftsY NC_009848.1 1551193 1552179 D signal recognition particle-docking protein 1551193..1552179 Bacillus pumilus SAFR-032 5620761 YP_001486738.1 CDS ylxM NC_009848.1 1552322 1552654 D putative DNA-binding protein 1552322..1552654 Bacillus pumilus SAFR-032 5620762 YP_001486739.1 CDS ffh NC_009848.1 1552668 1554008 D Sec family Type II general secretory pathway protein SRP54; signal recognition particle protein Ffh 1552668..1554008 Bacillus pumilus SAFR-032 5620763 YP_001486740.1 CDS rpsP NC_009848.1 1554114 1554386 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 1554114..1554386 Bacillus pumilus SAFR-032 5620764 YP_001486741.1 CDS BPUM_1498 NC_009848.1 1554386 1554631 D RNA binding protein 1554386..1554631 Bacillus pumilus SAFR-032 5620765 YP_001486742.1 CDS BPUM_1499 NC_009848.1 1554735 1555121 D hypothetical protein 1554735..1555121 Bacillus pumilus SAFR-032 5620766 YP_001486743.1 CDS rimM NC_009848.1 1555130 1555654 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 1555130..1555654 Bacillus pumilus SAFR-032 5620767 YP_001486744.1 CDS trmD NC_009848.1 1555651 1556385 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 1555651..1556385 Bacillus pumilus SAFR-032 5620768 YP_001486745.1 CDS rplS NC_009848.1 1556523 1556870 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 1556523..1556870 Bacillus pumilus SAFR-032 5620769 YP_001486746.1 CDS rbgA NC_009848.1 1556959 1557807 D essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 1556959..1557807 Bacillus pumilus SAFR-032 5620770 YP_001486747.1 CDS rnhB NC_009848.1 1557883 1558647 D RNH2; RNase HII; binds manganese; endonuclease which specifically degrades the RNA of RNA-DNA hybrids; ribonuclease HII 1557883..1558647 Bacillus pumilus SAFR-032 5620771 YP_001486748.1 CDS BPUM_1505 NC_009848.1 1558675 1560411 D hypothetical protein 1558675..1560411 Bacillus pumilus SAFR-032 5620772 YP_001486749.1 CDS ylqH NC_009848.1 1560408 1560683 D flagellar biosynthesis protein FlhB 1560408..1560683 Bacillus pumilus SAFR-032 5620773 YP_001486750.1 CDS sucC NC_009848.1 1560860 1562020 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 1560860..1562020 Bacillus pumilus SAFR-032 5620774 YP_001486751.1 CDS sucD NC_009848.1 1562043 1562945 D Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha 1562043..1562945 Bacillus pumilus SAFR-032 5620775 YP_001486752.1 CDS smf NC_009848.1 1563009 1563911 D Smf family DNA processing protein 1563009..1563911 Bacillus pumilus SAFR-032 5620776 YP_001486753.1 CDS topA NC_009848.1 1564105 1566180 D catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1564105..1566180 Bacillus pumilus SAFR-032 5620777 YP_001486754.1 CDS gidA1 NC_009848.1 1566251 1567555 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 1566251..1567555 Bacillus pumilus SAFR-032 5620778 YP_001486755.1 CDS xerC NC_009848.1 1567618 1568535 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 1567618..1568535 Bacillus pumilus SAFR-032 5620779 YP_001486756.1 CDS clpQ NC_009848.1 1568550 1569095 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 1568550..1569095 Bacillus pumilus SAFR-032 5620780 YP_001486757.1 CDS hslU NC_009848.1 1569112 1570512 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 1569112..1570512 Bacillus pumilus SAFR-032 5620781 YP_001486758.1 CDS codY NC_009848.1 1570547 1571326 D CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase (By similarity). It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; transcriptional repressor CodY 1570547..1571326 Bacillus pumilus SAFR-032 5620782 YP_001486759.1 CDS flgB NC_009848.1 1571613 1572002 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Vibrio parahaemolyticus protein is associated with the polar flagella; flagellar basal body rod protein FlgB 1571613..1572002 Bacillus pumilus SAFR-032 5620783 YP_001486760.1 CDS flgC NC_009848.1 1572002 1572454 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 1572002..1572454 Bacillus pumilus SAFR-032 5620784 YP_001486761.1 CDS fliE NC_009848.1 1572466 1572783 D forms a junction between the M-ring and FlgB during flagella biosynthesis; flagellar hook-basal body protein FliE 1572466..1572783 Bacillus pumilus SAFR-032 5620785 YP_001486762.1 CDS fliF NC_009848.1 1572833 1574425 D the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein 1572833..1574425 Bacillus pumilus SAFR-032 5620786 YP_001486763.1 CDS fliG NC_009848.1 1574437 1575453 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G 1574437..1575453 Bacillus pumilus SAFR-032 5620787 YP_001486764.1 CDS fliH NC_009848.1 1575446 1576210 D binds to and inhibits the function of flagella specific ATPase FliI; flagellar assembly protein H 1575446..1576210 Bacillus pumilus SAFR-032 5620788 YP_001486765.1 CDS fliI NC_009848.1 1576207 1577523 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 1576207..1577523 Bacillus pumilus SAFR-032 5620789 YP_001486766.1 CDS fliJ NC_009848.1 1577520 1577975 D rod/hook and filament chaperone; flagellar biosynthesis chaperone 1577520..1577975 Bacillus pumilus SAFR-032 5620790 YP_001486767.1 CDS ylxF NC_009848.1 1577988 1578686 D possible flagellar motor switch protein FliG; hypothetical protein 1577988..1578686 Bacillus pumilus SAFR-032 5620791 YP_001486768.1 CDS fliK NC_009848.1 1578687 1580018 D flagellar hook-length control protein 1578687..1580018 Bacillus pumilus SAFR-032 5620792 YP_001486769.1 CDS flgD NC_009848.1 1580018 1580464 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; flagellar basal body rod modification protein 1580018..1580464 Bacillus pumilus SAFR-032 5620793 YP_001486770.1 CDS flgG NC_009848.1 1580482 1581273 D makes up the distal portion of the flagellar basal body rod; flagellar basal body rod protein FlgG 1580482..1581273 Bacillus pumilus SAFR-032 5620794 YP_001486771.1 CDS BPUM_1528 NC_009848.1 1581311 1581526 D hypothetical protein 1581311..1581526 Bacillus pumilus SAFR-032 5620795 YP_001486772.1 CDS fliL NC_009848.1 1581523 1581951 D interacts with the cytoplasmic MS ring of the basal body and may act to stabilize the MotAB complexes which surround the MS ring; flagellar basal body-associated protein FliL 1581523..1581951 Bacillus pumilus SAFR-032 5620796 YP_001486773.1 CDS fliM NC_009848.1 1581984 1582982 D with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; flagellar motor switch protein FliM 1581984..1582982 Bacillus pumilus SAFR-032 5620797 YP_001486774.1 CDS fliY NC_009848.1 1582972 1584096 D One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein 1582972..1584096 Bacillus pumilus SAFR-032 5620798 YP_001486775.1 CDS cheY NC_009848.1 1584124 1584486 D chemotaxis protein CheB; response regulator CheY 1584124..1584486 Bacillus pumilus SAFR-032 5620799 YP_001486776.1 CDS fliZ NC_009848.1 1584505 1585164 D possible structural component of the flagellum that anchors the rod to the membrane; flagella biosynthesis protein FliZ 1584505..1585164 Bacillus pumilus SAFR-032 5620800 YP_001486777.1 CDS fliP NC_009848.1 1585157 1585822 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 1585157..1585822 Bacillus pumilus SAFR-032 5620801 YP_001486778.1 CDS fliQ NC_009848.1 1585839 1586108 D with proteins FliP and FliR forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliQ 1585839..1586108 Bacillus pumilus SAFR-032 5620802 YP_001486779.1 CDS fliR NC_009848.1 1586115 1586894 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 1586115..1586894 Bacillus pumilus SAFR-032 5620803 YP_001486780.1 CDS flhB NC_009848.1 1586891 1587979 D membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB 1586891..1587979 Bacillus pumilus SAFR-032 5620804 YP_001486781.1 CDS flhA NC_009848.1 1588009 1590042 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 1588009..1590042 Bacillus pumilus SAFR-032 5620805 YP_001486782.1 CDS flhF NC_009848.1 1590042 1591157 D positive regulator of class III flagellar genes; flagellar biosynthesis regulator FlhF 1590042..1591157 Bacillus pumilus SAFR-032 5620806 YP_001486783.1 CDS ylxH NC_009848.1 1591154 1592059 D possible ParA ATPase; ATPase 1591154..1592059 Bacillus pumilus SAFR-032 5620807 YP_001486784.1 CDS cheB NC_009848.1 1592056 1593129 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 1592056..1593129 Bacillus pumilus SAFR-032 5620808 YP_001486785.1 CDS cheA NC_009848.1 1593135 1595165 D sensor histidine kinase CheA 1593135..1595165 Bacillus pumilus SAFR-032 5620809 YP_001486786.1 CDS cheW NC_009848.1 1595190 1595651 D chemotaxis protein CheW 1595190..1595651 Bacillus pumilus SAFR-032 5620810 YP_001486787.1 CDS cheC NC_009848.1 1595664 1596290 D chemotaxis protein CheC 1595664..1596290 Bacillus pumilus SAFR-032 5620811 YP_001486788.1 CDS cheD NC_009848.1 1596290 1596790 D catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD 1596290..1596790 Bacillus pumilus SAFR-032 5620812 YP_001486789.1 CDS sigD NC_009848.1 1596815 1597582 D expressed in late exponential phase; controls the expression of genes coding cell surface proteins involved in chemotaxis, flagellar assembly, and autolysis; RNA polymerase sigma factor SigD 1596815..1597582 Bacillus pumilus SAFR-032 5620813 YP_001486790.1 CDS ylxL NC_009848.1 1597604 1598143 D hypothetical protein 1597604..1598143 Bacillus pumilus SAFR-032 5620814 YP_001486791.1 CDS tsf NC_009848.1 1599124 1600005 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1599124..1600005 Bacillus pumilus SAFR-032 5620816 YP_001486792.1 CDS pyrH NC_009848.1 1600210 1600863 D UMP kinase 1600210..1600863 Bacillus pumilus SAFR-032 5620817 YP_001486793.1 CDS frr NC_009848.1 1600865 1601422 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1600865..1601422 Bacillus pumilus SAFR-032 5620818 YP_001486794.1 CDS uppS NC_009848.1 1601552 1602334 D catalyzes the formation of undecaprenyl pyrophosphate from isopentenyl pyrophosphate; undecaprenyl pyrophosphate synthase 1601552..1602334 Bacillus pumilus SAFR-032 5620819 YP_001486795.1 CDS cdsA NC_009848.1 1602443 1603141 D phosphatidate cytidylyltransferase 1602443..1603141 Bacillus pumilus SAFR-032 5620820 YP_001486796.1 CDS dxr NC_009848.1 1603180 1604331 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1603180..1604331 Bacillus pumilus SAFR-032 5620821 YP_001486797.1 CDS yluC NC_009848.1 1604338 1605603 D RseP; M50 family peptidase 1604338..1605603 Bacillus pumilus SAFR-032 5620822 YP_001486798.1 CDS proS1 NC_009848.1 1605683 1607380 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1605683..1607380 Bacillus pumilus SAFR-032 5620823 YP_001486799.1 CDS polC NC_009848.1 1607456 1611769 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; required for leading strand synthesis; PolC exhibits 3' to 5' exonuclease activity; DNA polymerase III PolC 1607456..1611769 Bacillus pumilus SAFR-032 5620824 YP_001486800.1 CDS bglC NC_009848.1 1612188 1614038 D Family 9 glycoside hydrolase CelA; cellulase 1612188..1614038 Bacillus pumilus SAFR-032 5620825 YP_001486801.1 CDS celB NC_009848.1 1614069 1616174 D Family 48 glycoside hydrolase; cellulose 1,4-beta-cellobiosidase 1614069..1616174 Bacillus pumilus SAFR-032 5620826 YP_001486802.1 CDS BPUM_1560 NC_009848.1 1616259 1617488 D glycoside hydrolase 1616259..1617488 Bacillus pumilus SAFR-032 5620827 YP_001486803.1 CDS BPUM_1561 NC_009848.1 1617507 1618640 D Family 5 glycoside hydrolase YdhT; mannan endo-1,4-beta-mannosidase 1617507..1618640 Bacillus pumilus SAFR-032 5620828 YP_001486804.1 CDS ylxS NC_009848.1 1618879 1619352 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1618879..1619352 Bacillus pumilus SAFR-032 5620829 YP_001486805.1 CDS nusA NC_009848.1 1619385 1620500 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1619385..1620500 Bacillus pumilus SAFR-032 5620830 YP_001486806.1 CDS ylxR NC_009848.1 1620507 1620806 D hypothetical protein 1620507..1620806 Bacillus pumilus SAFR-032 5620831 YP_001486807.1 CDS ylxQ NC_009848.1 1620793 1621095 D hypothetical protein 1620793..1621095 Bacillus pumilus SAFR-032 5620832 YP_001486808.1 CDS infB NC_009848.1 1621115 1623235 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1621115..1623235 Bacillus pumilus SAFR-032 5620833 YP_001486809.1 CDS BPUM_1567 NC_009848.1 1623232 1623510 D hypothetical protein 1623232..1623510 Bacillus pumilus SAFR-032 5620834 YP_001486810.1 CDS rbfA NC_009848.1 1623528 1623878 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1623528..1623878 Bacillus pumilus SAFR-032 5620835 YP_001486811.1 CDS truB NC_009848.1 1623947 1624876 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1623947..1624876 Bacillus pumilus SAFR-032 5620836 YP_001486812.1 CDS ribC NC_009848.1 1624895 1625860 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 1624895..1625860 Bacillus pumilus SAFR-032 5620837 YP_001486813.1 CDS rpsO NC_009848.1 1626001 1626270 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1626001..1626270 Bacillus pumilus SAFR-032 5620838 YP_001486814.1 CDS pnpA NC_009848.1 1626451 1628568 D polynucleotide phosphorylase/polyadenylase 1626451..1628568 Bacillus pumilus SAFR-032 5620839 YP_001486815.1 CDS ylxY NC_009848.1 1628683 1629636 D polysaccharide deacetylase 1628683..1629636 Bacillus pumilus SAFR-032 5620840 YP_001486816.1 CDS mlpA NC_009848.1 1629670 1630899 D M16B subfamily peptidase 1629670..1630899 Bacillus pumilus SAFR-032 5620841 YP_001486817.1 CDS aph NC_009848.1 1630973 1631896 D aminoglycoside phosphotransferase; kanamycin kinase 1630973..1631896 Bacillus pumilus SAFR-032 5620842 YP_001486818.1 CDS ymxH NC_009848.1 1631967 1632239 D possible PRC-barrel domain protein; hypothetical protein 1631967..1632239 Bacillus pumilus SAFR-032 5620843 YP_001486819.1 CDS spoVFA NC_009848.1 1632363 1633265 D catalyzes the synthesis of dipicolinic acid from dihydroxydipicolinic acid; plays a role in spore heat resistance; dipicolinate synthase subunit A 1632363..1633265 Bacillus pumilus SAFR-032 5620844 YP_001486820.1 CDS spoVFB NC_009848.1 1633262 1633855 D involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme; dipicolinate synthase subunit B 1633262..1633855 Bacillus pumilus SAFR-032 5620845 YP_001486821.1 CDS asd NC_009848.1 1633995 1635014 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1633995..1635014 Bacillus pumilus SAFR-032 5620846 YP_001486822.1 CDS dapG NC_009848.1 1635107 1636321 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; diaminopimelate sensitive; aspartate kinase I 1635107..1636321 Bacillus pumilus SAFR-032 5620847 YP_001486823.1 CDS dapA2 NC_009848.1 1636352 1637218 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1636352..1637218 Bacillus pumilus SAFR-032 5620848 YP_001486824.1 CDS BPUM_1582 NC_009848.1 1637390 1639057 D metallo beta lactamase 1637390..1639057 Bacillus pumilus SAFR-032 5620849 YP_001486825.1 CDS clpP1 NC_009848.1 1639161 1639910 D TepA; endopeptidase ClpP 1639161..1639910 Bacillus pumilus SAFR-032 5620850 YP_001486826.1 CDS BPUM_1584 NC_009848.1 1639907 1640143 D hypothetical protein 1639907..1640143 Bacillus pumilus SAFR-032 5620851 YP_001486827.1 CDS spoIIIE NC_009848.1 1640254 1642626 D stage III sporulation DNA translocase E 1640254..1642626 Bacillus pumilus SAFR-032 5620852 YP_001486828.1 CDS ymfC NC_009848.1 1642792 1643517 D GntR family transcriptional regulator 1642792..1643517 Bacillus pumilus SAFR-032 5620853 YP_001486829.1 CDS BPUM_1587 NC_009848.1 1645167 1648283 D YdgH; resistance-nodulation-cell division acriflavin:proton (H+) antiporter 1645167..1648283 Bacillus pumilus SAFR-032 5620854 YP_001486830.1 CDS BPUM_1588 NC_009848.1 1648429 1649709 D YmfG; M16 family metallopeptidase 1648429..1649709 Bacillus pumilus SAFR-032 5620855 YP_001486831.1 CDS BPUM_1589 NC_009848.1 1649706 1650998 D YmfH; M16C subfamily metallopeptidase 1649706..1650998 Bacillus pumilus SAFR-032 5620856 YP_001486832.1 CDS BPUM_1590 NC_009848.1 1651149 1651625 D MarR family transcriptional regulator 1651149..1651625 Bacillus pumilus SAFR-032 5620857 YP_001486833.1 CDS ydgH NC_009848.1 1651603 1654722 D resistance-nodulation-cell division acriflavin:proton (H+) antiporter 1651603..1654722 Bacillus pumilus SAFR-032 5620858 YP_001486834.1 CDS fabG NC_009848.1 1654754 1655482 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1654754..1655482 Bacillus pumilus SAFR-032 5620859 YP_001486835.1 CDS ymfJ NC_009848.1 1655556 1655813 D hypothetical protein 1655556..1655813 Bacillus pumilus SAFR-032 5620860 YP_001486836.1 CDS BPUM_1594 NC_009848.1 1655945 1656736 D YmfK; hypothetical protein 1655945..1656736 Bacillus pumilus SAFR-032 5620861 YP_001486837.1 CDS ymfM NC_009848.1 1656751 1657671 D transcriptional regulation protein 1656751..1657671 Bacillus pumilus SAFR-032 5620862 YP_001486838.1 CDS pgsA NC_009848.1 1657747 1658328 D CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1657747..1658328 Bacillus pumilus SAFR-032 5620863 YP_001486839.1 CDS cinA NC_009848.1 1658345 1659595 D competence damage-inducible protein A 1658345..1659595 Bacillus pumilus SAFR-032 5620864 YP_001486840.1 CDS recA NC_009848.1 1659772 1660812 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1659772..1660812 Bacillus pumilus SAFR-032 5620865 YP_001486841.1 CDS ymdA NC_009848.1 1661118 1662680 D protein from Staphylococcus aureus has phosphodiesterase activity against 2'-3'-cAMP and 2'-3'-cGMP; phosphodiesterase 1661118..1662680 Bacillus pumilus SAFR-032 5620866 YP_001486842.1 CDS ymdB NC_009848.1 1662768 1663562 D hypothetical protein 1662768..1663562 Bacillus pumilus SAFR-032 5620867 YP_001486843.1 CDS spoVS NC_009848.1 1663764 1664024 D stage V sporulation protein S 1663764..1664024 Bacillus pumilus SAFR-032 5620868 YP_001486844.1 CDS yerP NC_009848.1 1664227 1667271 D resistance-nodulation-cell division acriflavin:proton (H+) antiporter 1664227..1667271 Bacillus pumilus SAFR-032 5620869 YP_001486845.1 CDS tdh NC_009848.1 1667446 1668510 D converts threonine and NAD to 1,2-amino-3-oxobutanoate and NADH; functions in threonine catabolism; L-threonine 3-dehydrogenase 1667446..1668510 Bacillus pumilus SAFR-032 5620870 YP_001486846.1 CDS kbl NC_009848.1 1668507 1669688 D catalyzes the formation of 2-amino-3-oxobutanoate from acetyl-CoA and glycine; 2-amino-3-ketobutyrate coenzyme A ligase 1668507..1669688 Bacillus pumilus SAFR-032 5620871 YP_001486847.1 CDS ymcB NC_009848.1 1669847 1671373 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 1669847..1671373 Bacillus pumilus SAFR-032 5620872 YP_001486848.1 CDS ymcA NC_009848.1 1671375 1671809 D hypothetical protein 1671375..1671809 Bacillus pumilus SAFR-032 5620873 YP_001486849.1 CDS cotE NC_009848.1 1672261 1672806 D outer spore coat protein E 1672261..1672806 Bacillus pumilus SAFR-032 5620874 YP_001486850.1 CDS mutS1 NC_009848.1 1672931 1675507 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1672931..1675507 Bacillus pumilus SAFR-032 5620875 YP_001486851.1 CDS mutL NC_009848.1 1675528 1677429 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 1675528..1677429 Bacillus pumilus SAFR-032 5620876 YP_001486852.1 CDS yuaB NC_009848.1 1677505 1678038 R hypothetical protein complement(1677505..1678038) Bacillus pumilus SAFR-032 5620877 YP_001486853.1 CDS BPUM_1611 NC_009848.1 1678164 1678574 R hypothetical protein complement(1678164..1678574) Bacillus pumilus SAFR-032 5620878 YP_001486854.1 CDS BPUM_1612 NC_009848.1 1678682 1678867 R hypothetical protein complement(1678682..1678867) Bacillus pumilus SAFR-032 5620879 YP_001486855.1 CDS carD NC_009848.1 1679131 1679607 D transcription factor CarD 1679131..1679607 Bacillus pumilus SAFR-032 5620880 YP_001486856.1 CDS ymaC NC_009848.1 1679919 1680668 D phage-related protein YmaC 1679919..1680668 Bacillus pumilus SAFR-032 5620881 YP_001486857.1 CDS BPUM_1615 NC_009848.1 1680834 1681982 D aspartate phosphatase response regulator; response regulator 1680834..1681982 Bacillus pumilus SAFR-032 5620882 YP_001486858.1 CDS aprX NC_009848.1 1682075 1683400 R protease complement(1682075..1683400) Bacillus pumilus SAFR-032 5620883 YP_001486859.1 CDS BPUM_1617 NC_009848.1 1683986 1684720 D hypothetical protein 1683986..1684720 Bacillus pumilus SAFR-032 5620884 YP_001486860.1 CDS ymaD NC_009848.1 1684798 1685247 D osmotic stress regulator 1684798..1685247 Bacillus pumilus SAFR-032 5620885 YP_001486861.1 CDS ebrB NC_009848.1 1685294 1685662 R DMT superfamily drug/metabolite transporter complement(1685294..1685662) Bacillus pumilus SAFR-032 5620886 YP_001486862.1 CDS ebrA NC_009848.1 1685676 1685993 R DMT superfamily drug/metabolite transporter complement(1685676..1685993) Bacillus pumilus SAFR-032 5620887 YP_001486863.1 CDS BPUM_1621 NC_009848.1 1685993 1686538 R TetR family transcriptional regulator complement(1685993..1686538) Bacillus pumilus SAFR-032 5620888 YP_001486864.1 CDS ymaG NC_009848.1 1686651 1686902 R spore protein YmaG complement(1686651..1686902) Bacillus pumilus SAFR-032 5620889 YP_001486865.1 CDS ymaF NC_009848.1 1687007 1687408 D hypothetical protein 1687007..1687408 Bacillus pumilus SAFR-032 5620890 YP_001486866.1 CDS miaA NC_009848.1 1687439 1688434 D IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase 1687439..1688434 Bacillus pumilus SAFR-032 5620891 YP_001486867.1 CDS hfq NC_009848.1 1688460 1688681 D Stimulates the elongation of poly(A) tails; RNA-binding protein Hfq 1688460..1688681 Bacillus pumilus SAFR-032 5620892 YP_001486868.1 CDS ymzC NC_009848.1 1688839 1689168 D hypothetical protein 1688839..1689168 Bacillus pumilus SAFR-032 5620893 YP_001486869.1 CDS ymzA NC_009848.1 1689248 1689460 D hypothetical protein 1689248..1689460 Bacillus pumilus SAFR-032 5620894 YP_001486870.1 CDS nrdI NC_009848.1 1689721 1690119 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 1689721..1690119 Bacillus pumilus SAFR-032 5620895 YP_001486871.1 CDS nrdE NC_009848.1 1690079 1692181 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1690079..1692181 Bacillus pumilus SAFR-032 5620896 YP_001486872.1 CDS nrdF NC_009848.1 1692199 1693179 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 1692199..1693179 Bacillus pumilus SAFR-032 5620897 YP_001486873.1 CDS ymaB NC_009848.1 1693264 1693881 D MutT/NUDIX family hydrolase 1693264..1693881 Bacillus pumilus SAFR-032 5620898 YP_001486874.1 CDS cwlC NC_009848.1 1693948 1694706 R N-acetylmuramoyl-L-alanine amidase complement(1693948..1694706) Bacillus pumilus SAFR-032 5620899 YP_001486875.1 CDS spoVK NC_009848.1 1695027 1695986 D SpoVJ; stage V sporulation protein K 1695027..1695986 Bacillus pumilus SAFR-032 5620900 YP_001486876.1 CDS BPUM_1634 NC_009848.1 1696108 1697370 D YnbA; HflX family GTP-binding protein 1696108..1697370 Bacillus pumilus SAFR-032 5620901 YP_001486877.1 CDS ynbB NC_009848.1 1697389 1698669 D aluminum resistance protein 1697389..1698669 Bacillus pumilus SAFR-032 5620902 YP_001486878.1 CDS glnR NC_009848.1 1698760 1699170 D glutamine synthetase 1698760..1699170 Bacillus pumilus SAFR-032 5620903 YP_001486879.1 CDS glnA NC_009848.1 1699230 1700564 D glutamate--ammonia ligase 1699230..1700564 Bacillus pumilus SAFR-032 5620904 YP_001486880.1 CDS BPUM_1638 NC_009848.1 1701045 1701197 D hypothetical protein 1701045..1701197 Bacillus pumilus SAFR-032 5620905 YP_001486881.1 CDS BPUM_1639 NC_009848.1 1701404 1702471 D patatin phospholipase 1701404..1702471 Bacillus pumilus SAFR-032 5620906 YP_001486882.1 CDS BPUM_1640 NC_009848.1 1703198 1703776 D hypothetical protein 1703198..1703776 Bacillus pumilus SAFR-032 5620907 YP_001486883.1 CDS BPUM_1641 NC_009848.1 1703943 1704146 D hypothetical protein 1703943..1704146 Bacillus pumilus SAFR-032 5620908 YP_001486884.1 CDS BPUM_1642 NC_009848.1 1704147 1704380 D hypothetical protein 1704147..1704380 Bacillus pumilus SAFR-032 5620909 YP_001486885.1 CDS BPUM_1643 NC_009848.1 1704344 1704493 D hypothetical protein 1704344..1704493 Bacillus pumilus SAFR-032 5620910 YP_001486886.1 CDS yjcP NC_009848.1 1705102 1705584 D hypothetical protein 1705102..1705584 Bacillus pumilus SAFR-032 5620912 YP_001486887.1 CDS BPUM_1646 NC_009848.1 1705664 1705870 D hypothetical protein 1705664..1705870 Bacillus pumilus SAFR-032 5620913 YP_001486888.1 CDS yobJ NC_009848.1 1707586 1708482 D membrane protein 1707586..1708482 Bacillus pumilus SAFR-032 5620916 YP_001486889.1 CDS BPUM_1650 NC_009848.1 1708517 1708795 D hypothetical protein 1708517..1708795 Bacillus pumilus SAFR-032 5620917 YP_001486890.1 CDS BPUM_1651 NC_009848.1 1709199 1710332 D aspartate phosphatase response regulator 1709199..1710332 Bacillus pumilus SAFR-032 5620918 YP_001486891.1 CDS BPUM_1652 NC_009848.1 1710723 1712648 D hypothetical protein 1710723..1712648 Bacillus pumilus SAFR-032 5620919 YP_001486892.1 CDS BPUM_1653 NC_009848.1 1712654 1713136 D hypothetical protein 1712654..1713136 Bacillus pumilus SAFR-032 5620920 YP_001486893.1 CDS BPUM_1654 NC_009848.1 1713310 1714032 D hypothetical protein 1713310..1714032 Bacillus pumilus SAFR-032 5620921 YP_001486894.1 CDS BPUM_1655 NC_009848.1 1714032 1714505 D hypothetical protein 1714032..1714505 Bacillus pumilus SAFR-032 5620922 YP_001486895.1 CDS BPUM_1656 NC_009848.1 1714770 1715219 R hypothetical protein complement(1714770..1715219) Bacillus pumilus SAFR-032 5620923 YP_001486896.1 CDS BPUM_1657 NC_009848.1 1715432 1715974 D GNAT family acetyltransferase 1715432..1715974 Bacillus pumilus SAFR-032 5620924 YP_001486897.1 CDS BPUM_1658 NC_009848.1 1716115 1716696 D phosphatidate phosphatase 1716115..1716696 Bacillus pumilus SAFR-032 5620925 YP_001486898.1 CDS ydhG NC_009848.1 1716749 1717120 R hypothetical protein complement(1716749..1717120) Bacillus pumilus SAFR-032 5620926 YP_001486899.1 CDS BPUM_1660 NC_009848.1 1717512 1718180 D hypothetical protein 1717512..1718180 Bacillus pumilus SAFR-032 5620927 YP_001486900.1 CDS BPUM_1661 NC_009848.1 1718255 1718599 D hypothetical protein 1718255..1718599 Bacillus pumilus SAFR-032 5620928 YP_001486901.1 CDS BPUM_1662 NC_009848.1 1718644 1719681 D collagen triple helix protein; hypothetical protein 1718644..1719681 Bacillus pumilus SAFR-032 5620929 YP_001486902.1 CDS BPUM_1663 NC_009848.1 1719939 1721051 D aspartate phosphatase response regulator 1719939..1721051 Bacillus pumilus SAFR-032 5620930 YP_001486903.1 CDS BPUM_1664 NC_009848.1 1721511 1721744 D hypothetical protein 1721511..1721744 Bacillus pumilus SAFR-032 5620931 YP_001486904.1 CDS yoaK NC_009848.1 1721785 1722480 R hypothetical protein complement(1721785..1722480) Bacillus pumilus SAFR-032 5620932 YP_001486905.1 CDS ligD NC_009848.1 1722515 1724380 R catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase complement(1722515..1724380) Bacillus pumilus SAFR-032 5620933 YP_001486906.1 CDS ykoV NC_009848.1 1724497 1725345 D Ku; Ku-like DNA end-binding protein 1724497..1725345 Bacillus pumilus SAFR-032 5620934 YP_001486907.1 CDS ydaT NC_009848.1 1725369 1725812 R hypothetical protein complement(1725369..1725812) Bacillus pumilus SAFR-032 5620935 YP_001486908.1 CDS BPUM_1669 NC_009848.1 1725976 1726446 D possible fosfomycin resistance protein; glutathione transferase 1725976..1726446 Bacillus pumilus SAFR-032 5620936 YP_001486909.1 CDS BPUM_1670 NC_009848.1 1726495 1726908 D possible rrf2 transcriptional regulator; transcriptional regulator 1726495..1726908 Bacillus pumilus SAFR-032 5620937 YP_001486910.1 CDS BPUM_1671 NC_009848.1 1727010 1727861 D nucleoside diphosphate glycosyl epimerase 1727010..1727861 Bacillus pumilus SAFR-032 5620938 YP_001486911.1 CDS yvfV NC_009848.1 1728028 1728744 D (S)-2-hydroxy-acid oxidase 1728028..1728744 Bacillus pumilus SAFR-032 5620939 YP_001486912.1 CDS yvfW NC_009848.1 1728766 1730187 D iron-sulfur cluster-binding protein 1728766..1730187 Bacillus pumilus SAFR-032 5620940 YP_001486913.1 CDS BPUM_1674 NC_009848.1 1730187 1730909 D hypothetical protein 1730187..1730909 Bacillus pumilus SAFR-032 5620941 YP_001486914.1 CDS BPUM_1675 NC_009848.1 1731056 1731964 D DMT superfamily drug/metabolite transporter 1731056..1731964 Bacillus pumilus SAFR-032 5620942 YP_001486915.1 CDS BPUM_1676 NC_009848.1 1731977 1732168 R hypothetical protein complement(1731977..1732168) Bacillus pumilus SAFR-032 5620943 YP_001486916.1 CDS BPUM_1677 NC_009848.1 1732279 1734495 D possible PP2A phosphatase; phosphoprotein phosphatase 1732279..1734495 Bacillus pumilus SAFR-032 5620944 YP_001486917.1 CDS yrhI NC_009848.1 1735497 1736075 D possible AcrR family transcriptional regulator; transcriptional regulator 1735497..1736075 Bacillus pumilus SAFR-032 5620946 YP_001486918.1 CDS yrhJ NC_009848.1 1736097 1739240 D NADPH--hemoprotein reductase 1736097..1739240 Bacillus pumilus SAFR-032 5620947 YP_001486919.1 CDS mpr NC_009848.1 1739432 1740343 D extracellular metalloprotease; glutamyl endopeptidase 1739432..1740343 Bacillus pumilus SAFR-032 5620948 YP_001486920.1 CDS nucB NC_009848.1 1740557 1740985 D sporulation-specific nuclease 1740557..1740985 Bacillus pumilus SAFR-032 5620949 YP_001486921.1 CDS yojH NC_009848.1 1741124 1741972 D hypothetical protein 1741124..1741972 Bacillus pumilus SAFR-032 5620950 YP_001486922.1 CDS yoeB NC_009848.1 1742004 1742546 R hypothetical protein complement(1742004..1742546) Bacillus pumilus SAFR-032 5620951 YP_001486923.1 CDS BPUM_1685 NC_009848.1 1742841 1743275 D hypothetical protein 1742841..1743275 Bacillus pumilus SAFR-032 5620952 YP_001486924.1 CDS lexA NC_009848.1 1743321 1743941 R Represses a number of genes involved in the response to DNA damage; LexA repressor complement(1743321..1743941) Bacillus pumilus SAFR-032 5620953 YP_001486925.1 CDS yneA NC_009848.1 1744101 1744412 D cell division suppressor protein YneA 1744101..1744412 Bacillus pumilus SAFR-032 5620954 YP_001486926.1 CDS yneB NC_009848.1 1744430 1745077 D possible resolvase; recombinase 1744430..1745077 Bacillus pumilus SAFR-032 5620955 YP_001486927.1 CDS ynzC NC_009848.1 1745147 1745377 D hypothetical protein 1745147..1745377 Bacillus pumilus SAFR-032 5620956 YP_001486928.1 CDS tkt NC_009848.1 1745565 1747568 D transketolase 1745565..1747568 Bacillus pumilus SAFR-032 5620957 YP_001486929.1 CDS yneE NC_009848.1 1747766 1748212 D YoxF; hypothetical protein 1747766..1748212 Bacillus pumilus SAFR-032 5620958 YP_001486930.1 CDS yneF NC_009848.1 1748297 1748515 D YoxG; hypothetical protein 1748297..1748515 Bacillus pumilus SAFR-032 5620959 YP_001486931.1 CDS ynzD NC_009848.1 1748779 1748967 R hypothetical protein complement(1748779..1748967) Bacillus pumilus SAFR-032 5620960 YP_001486932.1 CDS ccdA NC_009848.1 1749161 1749868 D stage V sporulation thiol-disulfide oxidoreductase CcdA, DsbD family membrane protein; stage V sporulation cytochrome c-type biogenesis protein 1749161..1749868 Bacillus pumilus SAFR-032 5620961 YP_001486933.1 CDS yneJ NC_009848.1 1749963 1750445 D cytochrome c defective protein YoxI CcdC; hypothetical protein 1749963..1750445 Bacillus pumilus SAFR-032 5620962 YP_001486934.1 CDS yneK NC_009848.1 1750466 1750894 R hypothetical protein complement(1750466..1750894) Bacillus pumilus SAFR-032 5620963 YP_001486935.1 CDS sspP NC_009848.1 1751659 1751805 R CotL; small acid-soluble spore protein P complement(1751659..1751805) Bacillus pumilus SAFR-032 5620964 YP_001486936.1 CDS sspO NC_009848.1 1751822 1751968 R SASP O; found in forespore compartment; acid-soluble spore protein O complement(1751822..1751968) Bacillus pumilus SAFR-032 5620965 YP_001486937.1 CDS citB NC_009848.1 1752189 1754918 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1752189..1754918 Bacillus pumilus SAFR-032 5620966 YP_001486938.1 CDS yneN NC_009848.1 1754993 1755496 D possible thioredoxin; hypothetical protein 1754993..1755496 Bacillus pumilus SAFR-032 5620967 YP_001486939.1 CDS BPUM_1701 NC_009848.1 1755559 1755693 D hypothetical protein 1755559..1755693 Bacillus pumilus SAFR-032 5620968 YP_001486940.1 CDS sspN NC_009848.1 1755742 1755888 D SASP N; found in forespore compartment; acid-soluble spore protein N 1755742..1755888 Bacillus pumilus SAFR-032 5620969 YP_001486941.1 CDS tlp NC_009848.1 1755902 1756144 D small acid-soluble spore protein Tlp 1755902..1756144 Bacillus pumilus SAFR-032 5620970 YP_001486942.1 CDS yneP NC_009848.1 1756248 1756670 D 4-hydroxybenzoyl-CoA thioesterase 1756248..1756670 Bacillus pumilus SAFR-032 5620971 YP_001486943.1 CDS yneQ NC_009848.1 1756674 1756985 D hypothetical protein 1756674..1756985 Bacillus pumilus SAFR-032 5620972 YP_001486944.1 CDS yneR NC_009848.1 1757025 1757312 R hypothetical protein complement(1757025..1757312) Bacillus pumilus SAFR-032 5620973 YP_001486945.1 CDS yneS NC_009848.1 1757414 1758001 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY complement(1757414..1758001) Bacillus pumilus SAFR-032 5620974 YP_001486946.1 CDS yneT NC_009848.1 1758150 1758563 D CoA-binding protein 1758150..1758563 Bacillus pumilus SAFR-032 5620975 YP_001486947.1 CDS parE NC_009848.1 1758954 1760921 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1758954..1760921 Bacillus pumilus SAFR-032 5620976 YP_001486948.1 CDS parC NC_009848.1 1760924 1763362 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1760924..1763362 Bacillus pumilus SAFR-032 5620977 YP_001486949.1 CDS BPUM_1711 NC_009848.1 1763414 1763539 R hypothetical protein complement(1763414..1763539) Bacillus pumilus SAFR-032 5620978 YP_001486950.1 CDS ynfC NC_009848.1 1763583 1763918 R hypothetical protein complement(1763583..1763918) Bacillus pumilus SAFR-032 5620979 YP_001486951.1 CDS BPUM_1713 NC_009848.1 1764113 1765291 R major facilitator superfamily transporter complement(1764113..1765291) Bacillus pumilus SAFR-032 5620980 YP_001486952.1 CDS BPUM_1714 NC_009848.1 1765343 1765492 R hypothetical protein complement(1765343..1765492) Bacillus pumilus SAFR-032 5620981 YP_001486953.1 CDS BPUM_1716 NC_009848.1 1766349 1767383 R NADH-dependent flavin dehydrogenase complement(1766349..1767383) Bacillus pumilus SAFR-032 5620983 YP_001486954.1 CDS BPUM_1717 NC_009848.1 1767502 1767933 R MarR family transcriptional regulator complement(1767502..1767933) Bacillus pumilus SAFR-032 5620984 YP_001486955.1 CDS BPUM_1721 NC_009848.1 1770270 1770851 R possible NAD(P)H dehydrogenase (quinone); flavodoxin complement(1770270..1770851) Bacillus pumilus SAFR-032 5620988 YP_001486956.1 CDS ydzF NC_009848.1 1770975 1771319 D MarR family transcriptional regulator 1770975..1771319 Bacillus pumilus SAFR-032 5620989 YP_001486957.1 CDS thrC2 NC_009848.1 1771472 1772575 R threonine synthase complement(1771472..1772575) Bacillus pumilus SAFR-032 5620990 YP_001486958.1 CDS yabJA NC_009848.1 1772648 1773022 R YjgH; endoribonuclease L-PSP complement(1772648..1773022) Bacillus pumilus SAFR-032 5620991 YP_001486959.1 CDS BPUM_1725 NC_009848.1 1773034 1773684 R transcriptional regulator complement(1773034..1773684) Bacillus pumilus SAFR-032 5620992 YP_001486960.1 CDS BPUM_1727 NC_009848.1 1774351 1774539 D hypothetical protein 1774351..1774539 Bacillus pumilus SAFR-032 5620994 YP_001486961.1 CDS BPUM_1728 NC_009848.1 1774610 1774957 R hypothetical protein complement(1774610..1774957) Bacillus pumilus SAFR-032 5620995 YP_001486962.1 CDS BPUM_1729 NC_009848.1 1775036 1775461 R MarR family transcriptional regulator complement(1775036..1775461) Bacillus pumilus SAFR-032 5620996 YP_001486963.1 CDS BPUM_1730 NC_009848.1 1775534 1776103 R TetR family transcriptional regulator complement(1775534..1776103) Bacillus pumilus SAFR-032 5620997 YP_001486964.1 CDS BPUM_1731 NC_009848.1 1776284 1776844 D flavin reductase 1776284..1776844 Bacillus pumilus SAFR-032 5620998 YP_001486965.1 CDS BPUM_1732 NC_009848.1 1776886 1777797 D hypothetical protein 1776886..1777797 Bacillus pumilus SAFR-032 5620999 YP_001486966.1 CDS BPUM_1733 NC_009848.1 1777809 1778126 D hypothetical protein 1777809..1778126 Bacillus pumilus SAFR-032 5621000 YP_001486967.1 CDS BPUM_1735 NC_009848.1 1778641 1778802 D hypothetical protein 1778641..1778802 Bacillus pumilus SAFR-032 5621002 YP_001486968.1 CDS BPUM_1736 NC_009848.1 1778900 1779667 D hypothetical protein 1778900..1779667 Bacillus pumilus SAFR-032 5621003 YP_001486969.1 CDS BPUM_1737 NC_009848.1 1779711 1780133 R blasticidin S deaminase; hypothetical protein complement(1779711..1780133) Bacillus pumilus SAFR-032 5621004 YP_001486970.1 CDS BPUM_1738 NC_009848.1 1780252 1780524 R hypothetical protein complement(1780252..1780524) Bacillus pumilus SAFR-032 5621005 YP_001486971.1 CDS BPUM_1739 NC_009848.1 1780727 1781653 R esterase complement(1780727..1781653) Bacillus pumilus SAFR-032 5621006 YP_001486972.1 CDS BPUM_1740 NC_009848.1 1781684 1782082 R transcriptional regulator complement(1781684..1782082) Bacillus pumilus SAFR-032 5621007 YP_001486973.1 CDS BPUM_1741 NC_009848.1 1782310 1783776 R possible beta-glucosidase; glycosyl hydrolase complement(1782310..1783776) Bacillus pumilus SAFR-032 5621008 YP_001486974.1 CDS BPUM_1742 NC_009848.1 1783800 1785692 R PTS family glucose/glucoside (glc) porter component IIBCA complement(1783800..1785692) Bacillus pumilus SAFR-032 5621009 YP_001486975.1 CDS BPUM_1743 NC_009848.1 1785812 1786654 R transcription antiterminator complement(1785812..1786654) Bacillus pumilus SAFR-032 5621010 YP_001486976.1 CDS BPUM_1744 NC_009848.1 1787029 1787337 D hypothetical protein 1787029..1787337 Bacillus pumilus SAFR-032 5621011 YP_001486977.1 CDS BPUM_1745 NC_009848.1 1787392 1788795 R sensor histidine kinase complement(1787392..1788795) Bacillus pumilus SAFR-032 5621012 YP_001486978.1 CDS BPUM_1746 NC_009848.1 1788798 1789505 R response regulator complement(1788798..1789505) Bacillus pumilus SAFR-032 5621013 YP_001486979.1 CDS ynfF NC_009848.1 1789638 1790903 R glycosyl hydrolase complement(1789638..1790903) Bacillus pumilus SAFR-032 5621014 YP_001486980.1 CDS xynD NC_009848.1 1790938 1792473 R xylanase D; endo-1,4-beta-xylanase complement(1790938..1792473) Bacillus pumilus SAFR-032 5621015 YP_001486981.1 CDS mmsA NC_009848.1 1792697 1794157 R methylmalonate-semialdehyde dehydrogenase complement(1792697..1794157) Bacillus pumilus SAFR-032 5621016 YP_001486982.1 CDS melA NC_009848.1 1794496 1795836 R alpha-galactosidase complement(1794496..1795836) Bacillus pumilus SAFR-032 5621017 YP_001486983.1 CDS amyC NC_009848.1 1795870 1796700 R sugar ABC transporter ATP-binding protein complement(1795870..1796700) Bacillus pumilus SAFR-032 5621018 YP_001486984.1 CDS amyD NC_009848.1 1796700 1797632 R sugar ABC transporter ATP-binding protein complement(1796700..1797632) Bacillus pumilus SAFR-032 5621019 YP_001486985.1 CDS msmE NC_009848.1 1797663 1798919 R sugar ABC transporter ATP-binding protein complement(1797663..1798919) Bacillus pumilus SAFR-032 5621020 YP_001486986.1 CDS msmR NC_009848.1 1799138 1800178 R transcriptional regulator complement(1799138..1800178) Bacillus pumilus SAFR-032 5621021 YP_001486987.1 CDS BPUM_1755 NC_009848.1 1800360 1801052 R allulose-6-phosphate 3-epimerase complement(1800360..1801052) Bacillus pumilus SAFR-032 5621022 YP_001486988.1 CDS ulaA NC_009848.1 1801070 1802332 R membrane component; functions with enzymes IIB (sgaB; ulaB) and IIA (sgaA; ulaC) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; PTS system ascorbate-specific transporter subunit IIC complement(1801070..1802332) Bacillus pumilus SAFR-032 5621023 YP_001486989.1 CDS sgaB NC_009848.1 1802358 1802624 R PTS system, lactose/cellobiose specific IIB subunit; PTS family L-ascorbate (L-asc) porter component IIB complement(1802358..1802624) Bacillus pumilus SAFR-032 5621024 YP_001486990.1 CDS BPUM_1758 NC_009848.1 1802640 1804676 R PTS family L-ascorbate (L-asc) porter component IIA complement(1802640..1804676) Bacillus pumilus SAFR-032 5621025 YP_001486991.1 CDS BPUM_1759 NC_009848.1 1804997 1805437 R hypothetical protein complement(1804997..1805437) Bacillus pumilus SAFR-032 5621026 YP_001486992.1 CDS BPUM_1760 NC_009848.1 1805787 1806011 D hypothetical protein 1805787..1806011 Bacillus pumilus SAFR-032 5621027 YP_001486993.1 CDS BPUM_1761 NC_009848.1 1806077 1806535 R hypothetical protein complement(1806077..1806535) Bacillus pumilus SAFR-032 5621028 YP_001486994.1 CDS BPUM_1762 NC_009848.1 1806628 1806990 R hypothetical protein complement(1806628..1806990) Bacillus pumilus SAFR-032 5621029 YP_001486995.1 CDS BPUM_1763 NC_009848.1 1807141 1807473 R hypothetical protein complement(1807141..1807473) Bacillus pumilus SAFR-032 5621030 YP_001486996.1 CDS BPUM_1764 NC_009848.1 1807520 1809148 R hypothetical protein complement(1807520..1809148) Bacillus pumilus SAFR-032 5621031 YP_001486997.1 CDS BPUM_1765 NC_009848.1 1809524 1809994 R MarR family transcriptional regulator complement(1809524..1809994) Bacillus pumilus SAFR-032 5621032 YP_001486998.1 CDS BPUM_1766 NC_009848.1 1810041 1811633 D major facilitator superfamily transporter 1810041..1811633 Bacillus pumilus SAFR-032 5621033 YP_001486999.1 CDS BPUM_1767 NC_009848.1 1811673 1812542 R fructose-bisphosphate aldolase complement(1811673..1812542) Bacillus pumilus SAFR-032 5621034 YP_001487000.1 CDS BPUM_1768 NC_009848.1 1812545 1813003 R PTS family fructose/mannitol porter component IIA complement(1812545..1813003) Bacillus pumilus SAFR-032 5621035 YP_001487001.1 CDS fruAA NC_009848.1 1813019 1814434 R PTS system, fructose-specific enzyme II, BC component; PTS family fructose porter component IIBC complement(1813019..1814434) Bacillus pumilus SAFR-032 5621036 YP_001487002.1 CDS BPUM_1770 NC_009848.1 1814447 1815361 R 1-phosphofructokinase complement(1814447..1815361) Bacillus pumilus SAFR-032 5621037 YP_001487003.1 CDS BPUM_1771 NC_009848.1 1815492 1816268 R transcriptional regulator complement(1815492..1816268) Bacillus pumilus SAFR-032 5621038 YP_001487004.1 CDS BPUM_1772 NC_009848.1 1816425 1817834 D phospholipase D 1816425..1817834 Bacillus pumilus SAFR-032 5621039 YP_001487005.1 CDS BPUM_1773 NC_009848.1 1817845 1818330 R hypothetical protein complement(1817845..1818330) Bacillus pumilus SAFR-032 5621040 YP_001487006.1 CDS BPUM_1774 NC_009848.1 1818352 1819032 R Crp family transcriptional regulator complement(1818352..1819032) Bacillus pumilus SAFR-032 5621041 YP_001487007.1 CDS BPUM_1775 NC_009848.1 1819046 1819471 R hypothetical protein complement(1819046..1819471) Bacillus pumilus SAFR-032 5621042 YP_001487008.1 CDS BPUM_1776 NC_009848.1 1819683 1821110 D aldehyde dehydrogenase 1819683..1821110 Bacillus pumilus SAFR-032 5621043 YP_001487009.1 CDS cysJ NC_009848.1 1821322 1823142 D YvgR; sulfite reductase (NADPH) alpha subunit 1821322..1823142 Bacillus pumilus SAFR-032 5621044 YP_001487010.1 CDS cysI NC_009848.1 1823180 1824898 D hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta 1823180..1824898 Bacillus pumilus SAFR-032 5621045 YP_001487011.1 CDS acsA2 NC_009848.1 1824928 1826859 R acetate--CoA ligase complement(1824928..1826859) Bacillus pumilus SAFR-032 5621046 YP_001487012.1 CDS yngE NC_009848.1 1826877 1828406 R acetyl-CoA carboxylase complement(1826877..1828406) Bacillus pumilus SAFR-032 5621047 YP_001487013.1 CDS yngF NC_009848.1 1828419 1829201 R enoyl-CoA hydratase complement(1828419..1829201) Bacillus pumilus SAFR-032 5621048 YP_001487014.1 CDS yngG NC_009848.1 1829216 1830124 R catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; hydroxymethylglutaryl-CoA lyase complement(1829216..1830124) Bacillus pumilus SAFR-032 5621049 YP_001487015.1 CDS pycAA NC_009848.1 1830136 1830351 R acetyl-CoA carboxylase complement(1830136..1830351) Bacillus pumilus SAFR-032 5621050 YP_001487016.1 CDS yngH NC_009848.1 1830348 1831697 R acetyl-CoA carboxylase alpha subunit complement(1830348..1831697) Bacillus pumilus SAFR-032 5621051 YP_001487017.1 CDS yngI NC_009848.1 1831706 1833343 R long-chain-fatty-acid--CoA ligase complement(1831706..1833343) Bacillus pumilus SAFR-032 5621052 YP_001487018.1 CDS yngJ NC_009848.1 1833386 1834528 R acyl-CoA dehydrogenase complement(1833386..1834528) Bacillus pumilus SAFR-032 5621053 YP_001487019.1 CDS BPUM_1787 NC_009848.1 1834671 1836089 R hypothetical protein complement(1834671..1836089) Bacillus pumilus SAFR-032 5621054 YP_001487020.1 CDS ptp NC_009848.1 1836234 1837040 R protein-tyrosine-phosphatase complement(1836234..1837040) Bacillus pumilus SAFR-032 5621055 YP_001487021.1 CDS iolR NC_009848.1 1837163 1837927 D DeoR family transcriptional regulator 1837163..1837927 Bacillus pumilus SAFR-032 5621056 YP_001487022.1 CDS BPUM_1790 NC_009848.1 1837947 1838552 R hypothetical protein complement(1837947..1838552) Bacillus pumilus SAFR-032 5621057 YP_001487023.1 CDS BPUM_1791 NC_009848.1 1838660 1839784 D carbohydrate diacid transcriptional regulator 1838660..1839784 Bacillus pumilus SAFR-032 5621058 YP_001487024.1 CDS glcD NC_009848.1 1839856 1841271 D (S)-2-hydroxy-acid oxidase subunit D 1839856..1841271 Bacillus pumilus SAFR-032 5621059 YP_001487025.1 CDS glcF NC_009848.1 1841268 1842611 D (S)-2-hydroxy-acid oxidase subunit F 1841268..1842611 Bacillus pumilus SAFR-032 5621060 YP_001487026.1 CDS gerA NC_009848.1 1842676 1844169 D spore germination protein A 1842676..1844169 Bacillus pumilus SAFR-032 5621061 YP_001487027.1 CDS gerB NC_009848.1 1844182 1845282 D spore germination protein B; APC family amino acid-polyamine-organocation transporter 1844182..1845282 Bacillus pumilus SAFR-032 5621062 YP_001487028.1 CDS gerC NC_009848.1 1845261 1846379 D spore germination protein C 1845261..1846379 Bacillus pumilus SAFR-032 5621063 YP_001487029.1 CDS BPUM_1797 NC_009848.1 1846392 1846574 R hypothetical protein complement(1846392..1846574) Bacillus pumilus SAFR-032 5621064 YP_001487030.1 CDS BPUM_1799 NC_009848.1 1847189 1847419 R hypothetical protein complement(1847189..1847419) Bacillus pumilus SAFR-032 5621066 YP_001487031.1 CDS BPUM_1800 NC_009848.1 1847690 1848292 D hypothetical protein 1847690..1848292 Bacillus pumilus SAFR-032 5621067 YP_001487032.1 CDS hemD NC_009848.1 1848333 1849154 R catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; functions in tetrapyrrole and heme biosynthesis; uroporphyrinogen-III synthase complement(1848333..1849154) Bacillus pumilus SAFR-032 5621068 YP_001487033.1 CDS BPUM_1802 NC_009848.1 1849298 1849918 D GPR1/FUN34/yaaH family protein; hypothetical protein 1849298..1849918 Bacillus pumilus SAFR-032 5621069 YP_001487034.1 CDS yvbT NC_009848.1 1849957 1850991 R flavine monooxygenase complement(1849957..1850991) Bacillus pumilus SAFR-032 5621070 YP_001487035.1 CDS BPUM_1804 NC_009848.1 1851151 1856748 D triple helix repeat-containing collagen 1851151..1856748 Bacillus pumilus SAFR-032 5621071 YP_001487036.1 CDS cat86 NC_009848.1 1856768 1857328 R chloramphenicol O-acetyltransferase complement(1856768..1857328) Bacillus pumilus SAFR-032 5621072 YP_001487037.1 CDS BPUM_1806 NC_009848.1 1857393 1858760 R yoeA; MATE family multi-antimicrobial extrusion protein complement(1857393..1858760) Bacillus pumilus SAFR-032 5621073 YP_001487038.1 CDS dacC NC_009848.1 1858780 1860264 R S13 family carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase complement(1858780..1860264) Bacillus pumilus SAFR-032 5621074 YP_001487039.1 CDS pme NC_009848.1 1860392 1861372 R pectinesterase complement(1860392..1861372) Bacillus pumilus SAFR-032 5621075 YP_001487040.1 CDS yetF NC_009848.1 1861467 1862201 R hypothetical protein complement(1861467..1862201) Bacillus pumilus SAFR-032 5621076 YP_001487041.1 CDS nasE NC_009848.1 1862229 1862552 R nitrite reductase (NAD(P)H) small subunit complement(1862229..1862552) Bacillus pumilus SAFR-032 5621077 YP_001487042.1 CDS nasD NC_009848.1 1862567 1864987 R nitrite reductase (NAD(P)H) large subunit complement(1862567..1864987) Bacillus pumilus SAFR-032 5621078 YP_001487043.1 CDS BPUM_1812 NC_009848.1 1865497 1866852 D transposase 1865497..1866852 Bacillus pumilus SAFR-032 5621079 YP_001487044.1 CDS gltD NC_009848.1 1866990 1868474 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(1866990..1868474) Bacillus pumilus SAFR-032 5621080 YP_001487045.1 CDS gltA NC_009848.1 1868491 1873062 R glutamate synthase (NADPH) large subunit complement(1868491..1873062) Bacillus pumilus SAFR-032 5621081 YP_001487046.1 CDS gltC NC_009848.1 1873216 1874118 D LysR family transcriptional regulator 1873216..1874118 Bacillus pumilus SAFR-032 5621082 YP_001487047.1 CDS yfiB NC_009848.1 1874213 1875946 D ABC transporter ATP-binding protein 1874213..1875946 Bacillus pumilus SAFR-032 5621083 YP_001487048.1 CDS yfiC NC_009848.1 1875955 1877772 D ABC transporter ATP-binding protein 1875955..1877772 Bacillus pumilus SAFR-032 5621084 YP_001487049.1 CDS bltR NC_009848.1 1877819 1878640 R multidrug-efflux transporter 2 regulator bmr2R bmtR; MerR family transcriptional regulator complement(1877819..1878640) Bacillus pumilus SAFR-032 5621085 YP_001487050.1 CDS yrkN NC_009848.1 1878691 1879296 D acetyltransferase 1878691..1879296 Bacillus pumilus SAFR-032 5621086 YP_001487051.1 CDS BPUM_1820 NC_009848.1 1879416 1880771 R transposase complement(1879416..1880771) Bacillus pumilus SAFR-032 5621087 YP_001487052.1 CDS yjcK NC_009848.1 1880869 1881429 R ribosomal-protein-alanine N-acetyltransferase complement(1880869..1881429) Bacillus pumilus SAFR-032 5621088 YP_001487053.1 CDS proA2 NC_009848.1 1881514 1882782 R glutamate-5-semialdehyde dehydrogenase complement(1881514..1882782) Bacillus pumilus SAFR-032 5621089 YP_001487054.1 CDS proJ NC_009848.1 1882796 1883914 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(1882796..1883914) Bacillus pumilus SAFR-032 5621090 YP_001487055.1 CDS proH NC_009848.1 1883942 1884739 R YoxE; pyrroline-5-carboxylate reductase 1 complement(1883942..1884739) Bacillus pumilus SAFR-032 5621091 YP_001487056.1 CDS BPUM_1825 NC_009848.1 1885211 1886407 D YjiB; cytochrome P450 1885211..1886407 Bacillus pumilus SAFR-032 5621092 YP_001487057.1 CDS yoaE NC_009848.1 1886529 1888571 D molybdopterin dehydrogenase 1886529..1888571 Bacillus pumilus SAFR-032 5621093 YP_001487058.1 CDS BPUM_1827 NC_009848.1 1888816 1889502 R glycoside hydrolase complement(1888816..1889502) Bacillus pumilus SAFR-032 5621094 YP_001487059.1 CDS xylB NC_009848.1 1889593 1891092 R xylulokinase complement(1889593..1891092) Bacillus pumilus SAFR-032 5621095 YP_001487060.1 CDS xylA NC_009848.1 1891128 1892465 R catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase complement(1891128..1892465) Bacillus pumilus SAFR-032 5621096 YP_001487061.1 CDS xylR NC_009848.1 1892679 1893839 D transcriptional regulator 1892679..1893839 Bacillus pumilus SAFR-032 5621097 YP_001487062.1 CDS xynB NC_009848.1 1893889 1895493 R xylan 1,4-beta-xylosidase complement(1893889..1895493) Bacillus pumilus SAFR-032 5621098 YP_001487063.1 CDS xynP NC_009848.1 1895517 1896908 R GPH family glycoside-pentoside-hexuronide:cation symporter complement(1895517..1896908) Bacillus pumilus SAFR-032 5621099 YP_001487064.1 CDS csaA NC_009848.1 1897423 1897755 R secretion chaperone CsaA complement(1897423..1897755) Bacillus pumilus SAFR-032 5621100 YP_001487065.1 CDS ywmF NC_009848.1 1897985 1898464 D hypothetical protein 1897985..1898464 Bacillus pumilus SAFR-032 5621101 YP_001487066.1 CDS BPUM_1835 NC_009848.1 1898454 1900085 R YndJ; hypothetical protein complement(1898454..1900085) Bacillus pumilus SAFR-032 5621102 YP_001487067.1 CDS BPUM_1836 NC_009848.1 1900078 1900683 R hypothetical protein complement(1900078..1900683) Bacillus pumilus SAFR-032 5621103 YP_001487068.1 CDS BPUM_1837 NC_009848.1 1900646 1901527 R hypothetical protein complement(1900646..1901527) Bacillus pumilus SAFR-032 5621104 YP_001487069.1 CDS yobS NC_009848.1 1901676 1902248 R TetR family transcriptional regulator complement(1901676..1902248) Bacillus pumilus SAFR-032 5621105 YP_001487070.1 CDS BPUM_1839 NC_009848.1 1902252 1902971 R zinc (Zn2+)-dependent hydrolase complement(1902252..1902971) Bacillus pumilus SAFR-032 5621106 YP_001487071.1 CDS BPUM_1840 NC_009848.1 1903009 1903482 R hypothetical protein complement(1903009..1903482) Bacillus pumilus SAFR-032 5621107 YP_001487072.1 CDS yobV NC_009848.1 1903537 1904469 R transcriptional regulator complement(1903537..1904469) Bacillus pumilus SAFR-032 5621108 YP_001487073.1 CDS BPUM_1842 NC_009848.1 1904588 1905112 D hypothetical protein 1904588..1905112 Bacillus pumilus SAFR-032 5621109 YP_001487074.1 CDS yozA NC_009848.1 1905348 1905677 R transcription regulator ArsR complement(1905348..1905677) Bacillus pumilus SAFR-032 5621110 YP_001487075.1 CDS BPUM_1844 NC_009848.1 1905864 1907189 D APC family amino acid-polyamine-organocation transporter 1905864..1907189 Bacillus pumilus SAFR-032 5621111 YP_001487076.1 CDS yocA NC_009848.1 1907287 1907949 D hypothetical protein 1907287..1907949 Bacillus pumilus SAFR-032 5621112 YP_001487077.1 CDS yqiQ NC_009848.1 1908183 1909100 R carboxyvinyl-carboxyphosphonate phosphorylmutase complement(1908183..1909100) Bacillus pumilus SAFR-032 5621113 YP_001487078.1 CDS prpD NC_009848.1 1909113 1910549 R functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase complement(1909113..1910549) Bacillus pumilus SAFR-032 5621114 YP_001487079.1 CDS mmgD NC_009848.1 1910552 1911694 R forms citrate from oxaloacetate and acetyl-CoA; functions in TCA cycle, glyoxylate cycle and respiration; citrate synthase 3 complement(1910552..1911694) Bacillus pumilus SAFR-032 5621115 YP_001487080.1 CDS yozB NC_009848.1 1911863 1912402 R hypothetical protein complement(1911863..1912402) Bacillus pumilus SAFR-032 5621116 YP_001487081.1 CDS yocC NC_009848.1 1912529 1913113 D hypothetical protein 1912529..1913113 Bacillus pumilus SAFR-032 5621117 YP_001487082.1 CDS yocH NC_009848.1 1913267 1914058 R cell wall protein complement(1913267..1914058) Bacillus pumilus SAFR-032 5621118 YP_001487083.1 CDS yocI NC_009848.1 1914315 1916096 R ATP-dependent helicase complement(1914315..1916096) Bacillus pumilus SAFR-032 5621119 YP_001487084.1 CDS yocK NC_009848.1 1916548 1916955 R general stress protein complement(1916548..1916955) Bacillus pumilus SAFR-032 5621121 YP_001487085.1 CDS yhfK NC_009848.1 1917140 1917787 R hypothetical protein complement(1917140..1917787) Bacillus pumilus SAFR-032 5621122 YP_001487086.1 CDS yozO NC_009848.1 1917965 1918303 R hypothetical protein complement(1917965..1918303) Bacillus pumilus SAFR-032 5621123 YP_001487087.1 CDS yozC NC_009848.1 1918770 1918982 R hypothetical protein complement(1918770..1918982) Bacillus pumilus SAFR-032 5621124 YP_001487088.1 CDS dhaS NC_009848.1 1919196 1920680 D aldehyde dehydrogenase 1919196..1920680 Bacillus pumilus SAFR-032 5621125 YP_001487089.1 CDS sqhC NC_009848.1 1920783 1922657 D squalene-hopene cyclase 1920783..1922657 Bacillus pumilus SAFR-032 5621126 YP_001487090.1 CDS sodF NC_009848.1 1922650 1923471 D iron (Fe) superoxide dismutase 1922650..1923471 Bacillus pumilus SAFR-032 5621127 YP_001487091.1 CDS yocS NC_009848.1 1923622 1924572 D BASS family bile acid:sodium (Na+) symporter 1923622..1924572 Bacillus pumilus SAFR-032 5621128 YP_001487092.1 CDS odhB NC_009848.1 1924607 1925863 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(1924607..1925863) Bacillus pumilus SAFR-032 5621129 YP_001487093.1 CDS sucA NC_009848.1 1925878 1928712 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(1925878..1928712) Bacillus pumilus SAFR-032 5621130 YP_001487094.1 CDS yojO NC_009848.1 1928938 1930854 R regulator of nitric oxide reductase complement(1928938..1930854) Bacillus pumilus SAFR-032 5621131 YP_001487095.1 CDS BPUM_1864 NC_009848.1 1930866 1931744 R nitric oxide reductase complement(1930866..1931744) Bacillus pumilus SAFR-032 5621132 YP_001487096.1 CDS yojM NC_009848.1 1931834 1932454 R copper/zinc (Cu/Zn) superoxide dismutase complement(1931834..1932454) Bacillus pumilus SAFR-032 5621133 YP_001487097.1 CDS BPUM_1867 NC_009848.1 1934235 1934849 R YojJ; hypothetical protein complement(1934235..1934849) Bacillus pumilus SAFR-032 5621135 YP_001487098.1 CDS BPUM_1868 NC_009848.1 1935113 1936474 D NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein 1935113..1936474 Bacillus pumilus SAFR-032 5621136 YP_001487099.1 CDS BPUM_1869 NC_009848.1 1936520 1937185 R hypothetical protein complement(1936520..1937185) Bacillus pumilus SAFR-032 5621137 YP_001487100.1 CDS BPUM_1870 NC_009848.1 1937204 1937554 R YojF; hypothetical protein complement(1937204..1937554) Bacillus pumilus SAFR-032 5621138 YP_001487101.1 CDS BPUM_1871 NC_009848.1 1937551 1937832 R hypothetical protein complement(1937551..1937832) Bacillus pumilus SAFR-032 5621139 YP_001487102.1 CDS rarD NC_009848.1 1937911 1938816 R YojE; DMT superfamily drug/metabolite transporter complement(1937911..1938816) Bacillus pumilus SAFR-032 5621140 YP_001487103.1 CDS yozR NC_009848.1 1938912 1939385 D hypothetical protein 1938912..1939385 Bacillus pumilus SAFR-032 5621141 YP_001487104.1 CDS BPUM_1874 NC_009848.1 1939426 1939644 R hypothetical protein complement(1939426..1939644) Bacillus pumilus SAFR-032 5621142 YP_001487105.1 CDS yodB NC_009848.1 1939720 1940052 R transcriptional regulator complement(1939720..1940052) Bacillus pumilus SAFR-032 5621143 YP_001487106.1 CDS BPUM_1876 NC_009848.1 1940192 1940809 D nitroreductase 1940192..1940809 Bacillus pumilus SAFR-032 5621144 YP_001487107.1 CDS BPUM_1877 NC_009848.1 1941046 1941249 D hypothetical protein 1941046..1941249 Bacillus pumilus SAFR-032 5621145 YP_001487108.1 CDS yodF NC_009848.1 1941249 1942742 D SSS family solute/sodium (Na+) symporter 1941249..1942742 Bacillus pumilus SAFR-032 5621146 YP_001487109.1 CDS BPUM_1879 NC_009848.1 1942821 1943735 R O-methyltransferase complement(1942821..1943735) Bacillus pumilus SAFR-032 5621147 YP_001487110.1 CDS ctpA NC_009848.1 1944081 1945466 R peptidase complement(1944081..1945466) Bacillus pumilus SAFR-032 5621148 YP_001487111.1 CDS BPUM_1881 NC_009848.1 1945618 1946316 D YodH; hypothetical protein 1945618..1946316 Bacillus pumilus SAFR-032 5621149 YP_001487112.1 CDS yodI NC_009848.1 1946409 1946660 D spore protein YodI 1946409..1946660 Bacillus pumilus SAFR-032 5621150 YP_001487113.1 CDS yodJ NC_009848.1 1946711 1947541 R M15 family peptidase; serine-type D-Ala-D-Ala carboxypeptidase complement(1946711..1947541) Bacillus pumilus SAFR-032 5621151 YP_001487114.1 CDS deoD NC_009848.1 1947610 1948305 R catalyzes the reversible phosphorolysis of ribonucleosides and 2'- deoxyribonucleosides to the free base and (2'-deoxy)ribose-1- phosphate; purine nucleoside phosphorylase complement(1947610..1948305) Bacillus pumilus SAFR-032 5621152 YP_001487115.1 CDS BPUM_1885 NC_009848.1 1948419 1948736 R hypothetical protein complement(1948419..1948736) Bacillus pumilus SAFR-032 5621153 YP_001487116.1 CDS BPUM_1886 NC_009848.1 1948791 1949399 R phosphatase complement(1948791..1949399) Bacillus pumilus SAFR-032 5621154 YP_001487117.1 CDS yozD NC_009848.1 1949448 1949618 R hypothetical protein complement(1949448..1949618) Bacillus pumilus SAFR-032 5621155 YP_001487118.1 CDS BPUM_1888 NC_009848.1 1949639 1949872 D hypothetical protein 1949639..1949872 Bacillus pumilus SAFR-032 5621156 YP_001487119.1 CDS yodN NC_009848.1 1949869 1950549 R hypothetical protein complement(1949869..1950549) Bacillus pumilus SAFR-032 5621157 YP_001487120.1 CDS yozE NC_009848.1 1950694 1950918 R hypothetical protein complement(1950694..1950918) Bacillus pumilus SAFR-032 5621158 YP_001487121.1 CDS BPUM_1891 NC_009848.1 1950997 1951278 R hypothetical protein complement(1950997..1951278) Bacillus pumilus SAFR-032 5621159 YP_001487122.1 CDS kamA NC_009848.1 1951281 1952681 R lysine 2,3-aminomutase complement(1951281..1952681) Bacillus pumilus SAFR-032 5621160 YP_001487123.1 CDS BPUM_1893 NC_009848.1 1952799 1954175 R transcriptional regulator complement(1952799..1954175) Bacillus pumilus SAFR-032 5621161 YP_001487124.1 CDS cgeD NC_009848.1 1954334 1955629 R spore maturation protein CgeD complement(1954334..1955629) Bacillus pumilus SAFR-032 5621162 YP_001487125.1 CDS cgeC NC_009848.1 1955647 1955967 R spore maturation protein CgeC complement(1955647..1955967) Bacillus pumilus SAFR-032 5621163 YP_001487126.1 CDS cgeA NC_009848.1 1956175 1956576 D spore maturation protein CgeA 1956175..1956576 Bacillus pumilus SAFR-032 5621164 YP_001487127.1 CDS cgeB NC_009848.1 1956592 1957554 D spore maturation protein CgeB 1956592..1957554 Bacillus pumilus SAFR-032 5621165 YP_001487128.1 CDS neuA NC_009848.1 1957589 1958305 R N-acylneuraminate cytidylyltransferase complement(1957589..1958305) Bacillus pumilus SAFR-032 5621166 YP_001487129.1 CDS capD NC_009848.1 1958549 1959577 D capsular polysaccharide biosynthesis protein D 1958549..1959577 Bacillus pumilus SAFR-032 5621167 YP_001487130.1 CDS msrB NC_009848.1 1959628 1960059 R this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B complement(1959628..1960059) Bacillus pumilus SAFR-032 5621168 YP_001487131.1 CDS msrA NC_009848.1 1960056 1960592 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(1960056..1960592) Bacillus pumilus SAFR-032 5621169 YP_001487132.1 CDS BPUM_1902 NC_009848.1 1960730 1961161 D MarR family transcriptional regulator 1960730..1961161 Bacillus pumilus SAFR-032 5621170 YP_001487133.1 CDS BPUM_1903 NC_009848.1 1961216 1961476 D hypothetical protein 1961216..1961476 Bacillus pumilus SAFR-032 5621171 YP_001487134.1 CDS BPUM_1904 NC_009848.1 1961597 1962262 D hypothetical protein 1961597..1962262 Bacillus pumilus SAFR-032 5621172 YP_001487135.1 CDS ypmT NC_009848.1 1962295 1962492 R hypothetical protein complement(1962295..1962492) Bacillus pumilus SAFR-032 5621173 YP_001487136.1 CDS ypmS NC_009848.1 1962515 1963081 R hypothetical protein complement(1962515..1963081) Bacillus pumilus SAFR-032 5621174 YP_001487137.1 CDS ypmR NC_009848.1 1963091 1963852 R lipase complement(1963091..1963852) Bacillus pumilus SAFR-032 5621175 YP_001487138.1 CDS ypmQ NC_009848.1 1963922 1964512 R electron transport protein complement(1963922..1964512) Bacillus pumilus SAFR-032 5621176 YP_001487139.1 CDS BPUM_1909 NC_009848.1 1964537 1965379 R DegV family protein complement(1964537..1965379) Bacillus pumilus SAFR-032 5621177 YP_001487140.1 CDS ypmP NC_009848.1 1965567 1965818 R hypothetical protein complement(1965567..1965818) Bacillus pumilus SAFR-032 5621178 YP_001487141.1 CDS ilvA NC_009848.1 1965855 1967123 R catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic; threonine dehydratase complement(1965855..1967123) Bacillus pumilus SAFR-032 5621179 YP_001487142.1 CDS yplP NC_009848.1 1967305 1968273 D sigma L dependent transcriptional regulator 1967305..1968273 Bacillus pumilus SAFR-032 5621180 YP_001487143.1 CDS BPUM_1913 NC_009848.1 1968288 1968926 D hemolysin III 1968288..1968926 Bacillus pumilus SAFR-032 5621181 YP_001487144.1 CDS ypkP NC_009848.1 1968961 1969584 R hypothetical protein complement(1968961..1969584) Bacillus pumilus SAFR-032 5621182 YP_001487145.1 CDS dfrA NC_009848.1 1969604 1970089 R dihydrofolate reductase complement(1969604..1970089) Bacillus pumilus SAFR-032 5621183 YP_001487146.1 CDS thyA NC_009848.1 1970086 1970880 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(1970086..1970880) Bacillus pumilus SAFR-032 5621184 YP_001487147.1 CDS BPUM_1917 NC_009848.1 1970984 1971523 R YpjQ; phosphatidylglycerophosphatase A complement(1970984..1971523) Bacillus pumilus SAFR-032 5621185 YP_001487148.1 CDS ypjP NC_009848.1 1971530 1972147 R hypothetical protein complement(1971530..1972147) Bacillus pumilus SAFR-032 5621186 YP_001487149.1 CDS BPUM_1919 NC_009848.1 1972301 1972375 D hypothetical protein 1972301..1972375 Bacillus pumilus SAFR-032 5621187 YP_001487150.1 CDS ypiP NC_009848.1 1972579 1973367 R hypothetical protein complement(1972579..1973367) Bacillus pumilus SAFR-032 5621188 YP_001487151.1 CDS yphP NC_009848.1 1973434 1973868 R hypothetical protein complement(1973434..1973868) Bacillus pumilus SAFR-032 5621189 YP_001487152.1 CDS ilvD NC_009848.1 1973950 1975626 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(1973950..1975626) Bacillus pumilus SAFR-032 5621190 YP_001487153.1 CDS ypgR NC_009848.1 1975934 1977070 R hypothetical protein complement(1975934..1977070) Bacillus pumilus SAFR-032 5621191 YP_001487154.1 CDS ypgQ NC_009848.1 1977101 1977712 R HD family metal dependent phosphohydrolase complement(1977101..1977712) Bacillus pumilus SAFR-032 5621192 YP_001487155.1 CDS bsaA NC_009848.1 1977726 1978208 R glutathione peroxidase complement(1977726..1978208) Bacillus pumilus SAFR-032 5621193 YP_001487156.1 CDS fhs NC_009848.1 1978283 1979965 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(1978283..1979965) Bacillus pumilus SAFR-032 5621194 YP_001487157.1 CDS metA NC_009848.1 1980103 1981011 D catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase 1980103..1981011 Bacillus pumilus SAFR-032 5621195 YP_001487158.1 CDS ugtP NC_009848.1 1981240 1982391 D processive; catalyzes the formation of mono-, di- and tri-glucosyldiacylglycerol by the progressive transfer of glucosyl residues to diacylglycerol; involved in the formation of membrane glycolipids; diacylglycerol glucosyltransferase 1981240..1982391 Bacillus pumilus SAFR-032 5621196 YP_001487159.1 CDS BPUM_1929 NC_009848.1 1982425 1983126 R hypothetical protein complement(1982425..1983126) Bacillus pumilus SAFR-032 5621197 YP_001487160.1 CDS cspD NC_009848.1 1983385 1983585 D cold shock protein 1983385..1983585 Bacillus pumilus SAFR-032 5621198 YP_001487161.1 CDS degR NC_009848.1 1983631 1983813 R regulatory protein DegR complement(1983631..1983813) Bacillus pumilus SAFR-032 5621199 YP_001487162.1 CDS ypeQ NC_009848.1 1983983 1984165 R hypothetical protein complement(1983983..1984165) Bacillus pumilus SAFR-032 5621200 YP_001487163.1 CDS ypeP NC_009848.1 1984167 1984838 R hypothetical protein complement(1984167..1984838) Bacillus pumilus SAFR-032 5621201 YP_001487164.1 CDS ypdP NC_009848.1 1984933 1985622 D hypothetical protein 1984933..1985622 Bacillus pumilus SAFR-032 5621202 YP_001487165.1 CDS rnhA NC_009848.1 1985624 1986019 D ribonuclease H 1985624..1986019 Bacillus pumilus SAFR-032 5621203 YP_001487166.1 CDS sspL NC_009848.1 1986064 1986189 D small acid-soluble spore protein L 1986064..1986189 Bacillus pumilus SAFR-032 5621204 YP_001487167.1 CDS ypcP NC_009848.1 1986206 1987093 R 5'-3' exonuclease complement(1986206..1987093) Bacillus pumilus SAFR-032 5621205 YP_001487168.1 CDS ypbS NC_009848.1 1987368 1987631 R hypothetical protein complement(1987368..1987631) Bacillus pumilus SAFR-032 5621206 YP_001487169.1 CDS BPUM_1939 NC_009848.1 1987673 1991272 R YpbR; hypothetical protein complement(1987673..1991272) Bacillus pumilus SAFR-032 5621207 YP_001487170.1 CDS ypbQ NC_009848.1 1991577 1992086 R isoprenylcysteine carboxyl methyltransferase complement(1991577..1992086) Bacillus pumilus SAFR-032 5621208 YP_001487171.1 CDS bcsA NC_009848.1 1992083 1993183 R naringenin-chalcone synthase complement(1992083..1993183) Bacillus pumilus SAFR-032 5621209 YP_001487172.1 CDS yheN2 NC_009848.1 1993753 1994556 D polysaccharide deacetylase 1993753..1994556 Bacillus pumilus SAFR-032 5621210 YP_001487173.1 CDS pbuX NC_009848.1 1994748 1996067 R xanthine permease; NCS2 family uracil:xanthine symporter-2 complement(1994748..1996067) Bacillus pumilus SAFR-032 5621211 YP_001487174.1 CDS xpt NC_009848.1 1996064 1996648 R xanthine phosphoribosyltransferase complement(1996064..1996648) Bacillus pumilus SAFR-032 5621212 YP_001487175.1 CDS ypwA NC_009848.1 1997002 1998507 R carboxypeptidase Taq; M32 family carboxypeptidase complement(1997002..1998507) Bacillus pumilus SAFR-032 5621213 YP_001487176.1 CDS ypvA NC_009848.1 1998635 2000572 R ATP-dependent helicase complement(1998635..2000572) Bacillus pumilus SAFR-032 5621214 YP_001487177.1 CDS BPUM_1947 NC_009848.1 2000634 2000846 D hypothetical protein 2000634..2000846 Bacillus pumilus SAFR-032 5621215 YP_001487178.1 CDS BPUM_1948 NC_009848.1 2000974 2001774 R integrase complement(2000974..2001774) Bacillus pumilus SAFR-032 5621216 YP_001487179.1 CDS BPUM_1949 NC_009848.1 2001792 2002124 R transposase complement(2001792..2002124) Bacillus pumilus SAFR-032 5621217 YP_001487180.1 CDS BPUM_1950 NC_009848.1 2002240 2003394 R YpsC; site-specific DNA-methyltransferase (adenine-specific) complement(2002240..2003394) Bacillus pumilus SAFR-032 5621218 YP_001487181.1 CDS ypsB NC_009848.1 2003949 2004254 R GpsB; guiding PBP1 shuttling; similar to DivIVA; cell division protein GpsB complement(2003949..2004254) Bacillus pumilus SAFR-032 5621220 YP_001487182.1 CDS ypsA NC_009848.1 2004312 2004944 R hypothetical protein complement(2004312..2004944) Bacillus pumilus SAFR-032 5621221 YP_001487183.1 CDS yprB NC_009848.1 2005474 2006721 R possible exonuclease; hypothetical protein complement(2005474..2006721) Bacillus pumilus SAFR-032 5621222 YP_001487184.1 CDS yprA NC_009848.1 2006745 2008991 R ATP-dependent helicase complement(2006745..2008991) Bacillus pumilus SAFR-032 5621223 YP_001487185.1 CDS yqiG NC_009848.1 2009236 2010270 D FMN reductase 2009236..2010270 Bacillus pumilus SAFR-032 5621224 YP_001487186.1 CDS ypqE NC_009848.1 2010319 2010825 R PTS family glucose/sucrose porter component IIA complement(2010319..2010825) Bacillus pumilus SAFR-032 5621225 YP_001487187.1 CDS BPUM_1957 NC_009848.1 2010994 2011413 D hypothetical protein 2010994..2011413 Bacillus pumilus SAFR-032 5621226 YP_001487188.1 CDS yppG NC_009848.1 2011434 2011886 R hypothetical protein complement(2011434..2011886) Bacillus pumilus SAFR-032 5621227 YP_001487189.1 CDS yppE NC_009848.1 2011993 2012364 R hypothetical protein complement(2011993..2012364) Bacillus pumilus SAFR-032 5621228 YP_001487190.1 CDS BPUM_1960 NC_009848.1 2012436 2012756 D hypothetical protein 2012436..2012756 Bacillus pumilus SAFR-032 5621229 YP_001487191.1 CDS sspM NC_009848.1 2012852 2012956 D small acid-soluble spore protein M 2012852..2012956 Bacillus pumilus SAFR-032 5621230 YP_001487192.1 CDS yppC NC_009848.1 2012979 2013935 R hypothetical protein complement(2012979..2013935) Bacillus pumilus SAFR-032 5621231 YP_001487193.1 CDS recU NC_009848.1 2013982 2014599 D functions in homologous recombination, DNA repair, and chromosome segregation; binds preferentially to three- and four-stranded DNA intermediates; introduces specific nick sites in four-stranded DNA substrates; functions similarly to Escherichia coli RuvC; Holliday junction-specific endonuclease 2013982..2014599 Bacillus pumilus SAFR-032 5621232 YP_001487194.1 CDS ponA NC_009848.1 2014637 2017348 D penicillin-binding proteins 1A and 1B 2014637..2017348 Bacillus pumilus SAFR-032 5621233 YP_001487195.1 CDS ypoC NC_009848.1 2017383 2017892 R hypothetical protein complement(2017383..2017892) Bacillus pumilus SAFR-032 5621234 YP_001487196.1 CDS nth NC_009848.1 2017889 2018551 R DNA-(apurinic or apyrimidinic site) lyase complement(2017889..2018551) Bacillus pumilus SAFR-032 5621235 YP_001487197.1 CDS dnaD NC_009848.1 2018569 2019273 R DNA replication protein DnaD complement(2018569..2019273) Bacillus pumilus SAFR-032 5621236 YP_001487198.1 CDS asnC NC_009848.1 2019371 2020729 R catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase complement(2019371..2020729) Bacillus pumilus SAFR-032 5621237 YP_001487199.1 CDS ypmB NC_009848.1 2020779 2021264 R hypothetical protein complement(2020779..2021264) Bacillus pumilus SAFR-032 5621238 YP_001487200.1 CDS ypmA NC_009848.1 2021277 2021447 R hypothetical protein complement(2021277..2021447) Bacillus pumilus SAFR-032 5621239 YP_001487201.1 CDS dinG NC_009848.1 2021580 2024372 R unwinds DNA; bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon complement(2021580..2024372) Bacillus pumilus SAFR-032 5621240 YP_001487202.1 CDS panD NC_009848.1 2024486 2024869 R Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase complement(2024486..2024869) Bacillus pumilus SAFR-032 5621241 YP_001487203.1 CDS panC NC_009848.1 2024862 2025728 R pantoate--beta-alanine ligase complement(2024862..2025728) Bacillus pumilus SAFR-032 5621242 YP_001487204.1 CDS panB NC_009848.1 2025725 2026564 R catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(2025725..2026564) Bacillus pumilus SAFR-032 5621243 YP_001487205.1 CDS birA NC_009848.1 2026762 2027745 R bifunctional biotin repressor/biotin--[acetyl-CoA-carboxylase] ligase; bifunctional transcriptional regulator/biotin--[acetyl-CoA-carboxylase] ligase complement(2026762..2027745) Bacillus pumilus SAFR-032 5621244 YP_001487206.1 CDS cca NC_009848.1 2027718 2028920 R catalyzes the addition and repair of the 3'-terminal CCA sequence in tRNA; these proteins belong to the CCA-adding enzyme subfamily 2 which does not have phosphohydrolase activity; tRNA CCA-pyrophosphorylase complement(2027718..2028920) Bacillus pumilus SAFR-032 5621245 YP_001487207.1 CDS BPUM_1977 NC_009848.1 2028913 2030058 R YpjH; glycosyltransferase complement(2028913..2030058) Bacillus pumilus SAFR-032 5621246 YP_001487208.1 CDS ypjG NC_009848.1 2030061 2030765 R hypothetical protein complement(2030061..2030765) Bacillus pumilus SAFR-032 5621247 YP_001487209.1 CDS mgsA NC_009848.1 2030752 2031171 R methylglyoxal synthase complement(2030752..2031171) Bacillus pumilus SAFR-032 5621248 YP_001487210.1 CDS dapB NC_009848.1 2031189 2031992 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(2031189..2031992) Bacillus pumilus SAFR-032 5621249 YP_001487211.1 CDS ypjD NC_009848.1 2031998 2032333 R pyrophosphatase complement(2031998..2032333) Bacillus pumilus SAFR-032 5621250 YP_001487212.1 CDS ypjC NC_009848.1 2032471 2033343 D hypothetical protein 2032471..2033343 Bacillus pumilus SAFR-032 5621251 YP_001487213.1 CDS ypjB NC_009848.1 2033374 2034177 R sporulation protein YpjB complement(2033374..2034177) Bacillus pumilus SAFR-032 5621252 YP_001487214.1 CDS ypjA NC_009848.1 2034243 2034800 R hypothetical protein complement(2034243..2034800) Bacillus pumilus SAFR-032 5621253 YP_001487215.1 CDS qcrC NC_009848.1 2034938 2035705 R menaquinol:cytochrome c dehydrogenase cytochrome b/c subunit complement(2034938..2035705) Bacillus pumilus SAFR-032 5621254 YP_001487216.1 CDS qcrB NC_009848.1 2035748 2036422 R electron transport protein; cytochrome b6 complement(2035748..2036422) Bacillus pumilus SAFR-032 5621255 YP_001487217.1 CDS qcrA NC_009848.1 2036425 2036931 R menaquinol:cytochrome c dehydrogenase iron-sulfur subunit complement(2036425..2036931) Bacillus pumilus SAFR-032 5621256 YP_001487218.1 CDS ypiF NC_009848.1 2037076 2037522 R hypothetical protein complement(2037076..2037522) Bacillus pumilus SAFR-032 5621257 YP_001487219.1 CDS ypiB NC_009848.1 2037584 2038123 R hypothetical protein complement(2037584..2038123) Bacillus pumilus SAFR-032 5621258 YP_001487220.1 CDS ypiA NC_009848.1 2038199 2039497 R hypothetical protein complement(2038199..2039497) Bacillus pumilus SAFR-032 5621259 YP_001487221.1 CDS aroE NC_009848.1 2039762 2041048 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(2039762..2041048) Bacillus pumilus SAFR-032 5621260 YP_001487222.1 CDS tyrA NC_009848.1 2041059 2042213 R catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate; prephenate dehydrogenase complement(2041059..2042213) Bacillus pumilus SAFR-032 5621261 YP_001487223.1 CDS hisC NC_009848.1 2042288 2043385 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(2042288..2043385) Bacillus pumilus SAFR-032 5621262 YP_001487224.1 CDS trpA NC_009848.1 2043396 2044199 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(2043396..2044199) Bacillus pumilus SAFR-032 5621263 YP_001487225.1 CDS trpB NC_009848.1 2044196 2045395 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(2044196..2045395) Bacillus pumilus SAFR-032 5621264 YP_001487226.1 CDS trpF NC_009848.1 2045376 2046035 R catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase complement(2045376..2046035) Bacillus pumilus SAFR-032 5621265 YP_001487227.1 CDS trpC NC_009848.1 2046041 2046793 R involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; Indole-3-glycerol phosphate synthase complement(2046041..2046793) Bacillus pumilus SAFR-032 5621266 YP_001487228.1 CDS trpD NC_009848.1 2046786 2047808 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(2046786..2047808) Bacillus pumilus SAFR-032 5621267 YP_001487229.1 CDS trpE NC_009848.1 2047780 2049327 R with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I complement(2047780..2049327) Bacillus pumilus SAFR-032 5621268 YP_001487230.1 CDS aroH NC_009848.1 2049560 2049943 R chorismate mutase complement(2049560..2049943) Bacillus pumilus SAFR-032 5621269 YP_001487231.1 CDS aroB NC_009848.1 2049940 2051031 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(2049940..2051031) Bacillus pumilus SAFR-032 5621270 YP_001487232.1 CDS aroF NC_009848.1 2051031 2052203 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(2051031..2052203) Bacillus pumilus SAFR-032 5621271 YP_001487233.1 CDS cheR NC_009848.1 2052277 2053056 R protein-glutamate O-methyltransferase complement(2052277..2053056) Bacillus pumilus SAFR-032 5621272 YP_001487234.1 CDS ndk NC_009848.1 2053201 2053647 R nucleoside diphosphate kinase complement(2053201..2053647) Bacillus pumilus SAFR-032 5621273 YP_001487235.1 CDS hepT NC_009848.1 2053778 2054740 R heptaprenyl diphosphate synthase component II complement(2053778..2054740) Bacillus pumilus SAFR-032 5621274 YP_001487236.1 CDS ubiE NC_009848.1 2054765 2055469 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(2054765..2055469) Bacillus pumilus SAFR-032 5621275 YP_001487237.1 CDS hepS NC_009848.1 2055473 2056240 R GerCA, HepA; trans-hexaprenyltranstransferase subunit 1 complement(2055473..2056240) Bacillus pumilus SAFR-032 5621276 YP_001487238.1 CDS mtrB NC_009848.1 2056355 2056555 R tryptophan RNA-binding attenuator protein; binds leader Trp transcript causing transcription termination; transcription attenuation protein MtrB complement(2056355..2056555) Bacillus pumilus SAFR-032 5621277 YP_001487239.1 CDS folE NC_009848.1 2056610 2057179 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(2056610..2057179) Bacillus pumilus SAFR-032 5621278 YP_001487240.1 CDS hbs NC_009848.1 2057370 2057648 R signal recognition particle-like (SRP) component DbpA HupA HbsU; non-specific DNA-binding protein HBsu complement(2057370..2057648) Bacillus pumilus SAFR-032 5621279 YP_001487241.1 CDS spoIVA NC_009848.1 2058023 2059501 R stage IV sporulation protein A SpoVP; spore cortex-coat assembly protein complement(2058023..2059501) Bacillus pumilus SAFR-032 5621280 YP_001487242.1 CDS yphF NC_009848.1 2059706 2060431 R JohF; hypothetical protein complement(2059706..2060431) Bacillus pumilus SAFR-032 5621281 YP_001487243.1 CDS yphE NC_009848.1 2060449 2060652 R hypothetical protein complement(2060449..2060652) Bacillus pumilus SAFR-032 5621282 YP_001487244.1 CDS gpsA NC_009848.1 2060918 2061955 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(2060918..2061955) Bacillus pumilus SAFR-032 5621283 YP_001487245.1 CDS engA NC_009848.1 2061970 2063280 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(2061970..2063280) Bacillus pumilus SAFR-032 5621284 YP_001487246.1 CDS BPUM_2016 NC_009848.1 2063440 2063634 R hypothetical protein complement(2063440..2063634) Bacillus pumilus SAFR-032 5621285 YP_001487247.1 CDS seaA NC_009848.1 2063641 2064525 R YphB; spore envelope protein complement(2063641..2064525) Bacillus pumilus SAFR-032 5621286 YP_001487248.1 CDS yphA NC_009848.1 2064522 2065124 R hypothetical protein complement(2064522..2065124) Bacillus pumilus SAFR-032 5621287 YP_001487249.1 CDS BPUM_2019 NC_009848.1 2065197 2065376 D hypothetical protein 2065197..2065376 Bacillus pumilus SAFR-032 5621288 YP_001487250.1 CDS fni NC_009848.1 2065428 2066495 R catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; isopentenyl pyrophosphate isomerase complement(2065428..2066495) Bacillus pumilus SAFR-032 5621289 YP_001487251.1 CDS rpsA NC_009848.1 2066510 2067661 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(2066510..2067661) Bacillus pumilus SAFR-032 5621290 YP_001487252.1 CDS cmk NC_009848.1 2067885 2068562 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(2067885..2068562) Bacillus pumilus SAFR-032 5621291 YP_001487253.1 CDS ypfB NC_009848.1 2068634 2068816 R JofB; hypothetical protein complement(2068634..2068816) Bacillus pumilus SAFR-032 5621292 YP_001487254.1 CDS ypfA NC_009848.1 2068880 2069527 R possible glycosyltransferase JofA; hypothetical protein complement(2068880..2069527) Bacillus pumilus SAFR-032 5621293 YP_001487255.1 CDS ypeB NC_009848.1 2069629 2070978 R JoeB YzuA; hypothetical protein complement(2069629..2070978) Bacillus pumilus SAFR-032 5621294 YP_001487256.1 CDS sleB NC_009848.1 2070995 2071906 R YpeA; spore cortex-lytic protein complement(2070995..2071906) Bacillus pumilus SAFR-032 5621295 YP_001487257.1 CDS ypdC NC_009848.1 2072035 2072691 R hypothetical protein complement(2072035..2072691) Bacillus pumilus SAFR-032 5621296 YP_001487258.1 CDS ypdA NC_009848.1 2072846 2073817 R possible FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase complement(2072846..2073817) Bacillus pumilus SAFR-032 5621297 YP_001487259.1 CDS gudB NC_009848.1 2073940 2075214 R NAD-specific glutamate dehydrogenase YpcA; glutamate dehydrogenase complement(2073940..2075214) Bacillus pumilus SAFR-032 5621298 YP_001487260.1 CDS ypbH NC_009848.1 2075409 2075990 R enables recognition and targeting of proteins for proteolysis, involved in negative regulation of competence; adaptor protein complement(2075409..2075990) Bacillus pumilus SAFR-032 5621299 YP_001487261.1 CDS ypbG NC_009848.1 2076156 2076944 R metallophosphoesterase complement(2076156..2076944) Bacillus pumilus SAFR-032 5621300 YP_001487262.1 CDS ypbF NC_009848.1 2077093 2077485 R hypothetical protein complement(2077093..2077485) Bacillus pumilus SAFR-032 5621301 YP_001487263.1 CDS ypbE NC_009848.1 2077550 2078311 R possible LysM family protein; hypothetical protein complement(2077550..2078311) Bacillus pumilus SAFR-032 5621302 YP_001487264.1 CDS ypbD NC_009848.1 2078256 2078897 R possible prenyl protease; hypothetical protein complement(2078256..2078897) Bacillus pumilus SAFR-032 5621303 YP_001487265.1 CDS recQ NC_009848.1 2078894 2080402 R RecS, YpbC; ATP-dependent helicase RecQ complement(2078894..2080402) Bacillus pumilus SAFR-032 5621304 YP_001487266.1 CDS ypbB NC_009848.1 2080395 2081447 R hypothetical protein complement(2080395..2081447) Bacillus pumilus SAFR-032 5621305 YP_001487267.1 CDS fer NC_009848.1 2081715 2081963 D ferredoxin 2081715..2081963 Bacillus pumilus SAFR-032 5621306 YP_001487268.1 CDS ypaA NC_009848.1 2081998 2082579 R hypothetical protein complement(2081998..2082579) Bacillus pumilus SAFR-032 5621307 YP_001487269.1 CDS serA NC_009848.1 2083143 2084717 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 2083143..2084717 Bacillus pumilus SAFR-032 5621308 YP_001487270.1 CDS BPUM_2040 NC_009848.1 2084752 2085396 R M23 family peptidase complement(2084752..2085396) Bacillus pumilus SAFR-032 5621309 YP_001487271.1 CDS rsiX NC_009848.1 2085497 2086540 R sigma X negative regulator complement(2085497..2086540) Bacillus pumilus SAFR-032 5621310 YP_001487272.1 CDS sigX NC_009848.1 2086518 2087126 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; in B. subtilis has been shown to regulate cell envelope modification and may effect antibiotic resistance; RNA polymerase sigma factor SigX complement(2086518..2087126) Bacillus pumilus SAFR-032 5621311 YP_001487273.1 CDS BPUM_2043 NC_009848.1 2087237 2087446 R hypothetical protein complement(2087237..2087446) Bacillus pumilus SAFR-032 5621312 YP_001487274.1 CDS resE NC_009848.1 2087532 2089313 R sensor histidine kinase complement(2087532..2089313) Bacillus pumilus SAFR-032 5621313 YP_001487275.1 CDS resD NC_009848.1 2089310 2090032 R response regulator complement(2089310..2090032) Bacillus pumilus SAFR-032 5621314 YP_001487276.1 CDS resC NC_009848.1 2090120 2091298 R cytochrome c biogenesis protein ResC complement(2090120..2091298) Bacillus pumilus SAFR-032 5621315 YP_001487277.1 CDS resB NC_009848.1 2091282 2092961 R cytochrome c biogenesis protein ResB complement(2091282..2092961) Bacillus pumilus SAFR-032 5621316 YP_001487278.1 CDS resA NC_009848.1 2092963 2093493 R catalyzes the reduction of the disulfide bonds in the heme binding site of apocytochrome c; thiol-disulfide oxidoreductase complement(2092963..2093493) Bacillus pumilus SAFR-032 5621317 YP_001487279.1 CDS rluB NC_009848.1 2093584 2094429 R pseudouridylate synthase complement(2093584..2094429) Bacillus pumilus SAFR-032 5621318 YP_001487280.1 CDS spmB NC_009848.1 2094456 2094992 R spore maturation protein B complement(2094456..2094992) Bacillus pumilus SAFR-032 5621319 YP_001487281.1 CDS spmA NC_009848.1 2094997 2095584 R spore maturation protein A complement(2094997..2095584) Bacillus pumilus SAFR-032 5621320 YP_001487282.1 CDS dacB NC_009848.1 2095572 2096729 R serine-type D-Ala-D-Ala carboxypeptidase complement(2095572..2096729) Bacillus pumilus SAFR-032 5621321 YP_001487283.1 CDS ypuI NC_009848.1 2096835 2097314 R hypothetical protein complement(2096835..2097314) Bacillus pumilus SAFR-032 5621322 YP_001487284.1 CDS scpB NC_009848.1 2097428 2098021 R segregation and condensation protein B complement(2097428..2098021) Bacillus pumilus SAFR-032 5621323 YP_001487285.1 CDS scpA NC_009848.1 2098011 2098769 R functions during chromosome segregation; may form a condensin-like structure with SMC and ScpB; segregation and condensation protein A complement(2098011..2098769) Bacillus pumilus SAFR-032 5621324 YP_001487286.1 CDS BPUM_2056 NC_009848.1 2098978 2099070 D hypothetical protein 2098978..2099070 Bacillus pumilus SAFR-032 5621325 YP_001487287.1 CDS ypuF NC_009848.1 2099158 2099682 D hypothetical protein 2099158..2099682 Bacillus pumilus SAFR-032 5621326 YP_001487288.1 CDS ribT NC_009848.1 2099707 2100060 R reductase complement(2099707..2100060) Bacillus pumilus SAFR-032 5621327 YP_001487289.1 CDS ribH NC_009848.1 2100174 2100638 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase complement(2100174..2100638) Bacillus pumilus SAFR-032 5621328 YP_001487290.1 CDS ribA NC_009848.1 2100666 2101292 R bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase complement(2100666..2101292) Bacillus pumilus SAFR-032 5621329 YP_001487291.1 CDS ribE NC_009848.1 2101304 2101954 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(2101304..2101954) Bacillus pumilus SAFR-032 5621330 YP_001487292.1 CDS ypuD NC_009848.1 2102455 2102799 R lipoprotein complement(2102455..2102799) Bacillus pumilus SAFR-032 5621331 YP_001487293.1 CDS BPUM_2063 NC_009848.1 2103024 2103257 R hypothetical protein complement(2103024..2103257) Bacillus pumilus SAFR-032 5621332 YP_001487294.1 CDS yezE NC_009848.1 2103470 2104051 R AcrR; TetR family transcriptional regulator complement(2103470..2104051) Bacillus pumilus SAFR-032 5621333 YP_001487295.1 CDS BPUM_2065 NC_009848.1 2104292 2105551 D major facilitator superfamily transporter 2104292..2105551 Bacillus pumilus SAFR-032 5621334 YP_001487296.1 CDS ppiB NC_009848.1 2105596 2106033 R peptidyl-prolyl isomerase complement(2105596..2106033) Bacillus pumilus SAFR-032 5621335 YP_001487297.1 CDS ypuA NC_009848.1 2106339 2107238 D hypothetical protein 2106339..2107238 Bacillus pumilus SAFR-032 5621336 YP_001487298.1 CDS lysA NC_009848.1 2107278 2108609 R diaminopimelate decarboxylase complement(2107278..2108609) Bacillus pumilus SAFR-032 5621337 YP_001487299.1 CDS spoVAF NC_009848.1 2108719 2110191 R stage V sporulation protein AF complement(2108719..2110191) Bacillus pumilus SAFR-032 5621338 YP_001487300.1 CDS spoVAEA NC_009848.1 2110145 2110753 R stage V sporulation protein AEA complement(2110145..2110753) Bacillus pumilus SAFR-032 5621339 YP_001487301.1 CDS spoVAEB NC_009848.1 2110760 2111110 R stage V sporulation protein AEB complement(2110760..2111110) Bacillus pumilus SAFR-032 5621340 YP_001487302.1 CDS spoVAD NC_009848.1 2111110 2112126 R stage V sporulation protein AD complement(2111110..2112126) Bacillus pumilus SAFR-032 5621341 YP_001487303.1 CDS spoVAC NC_009848.1 2112139 2112591 R stage V sporulation protein AC complement(2112139..2112591) Bacillus pumilus SAFR-032 5621342 YP_001487304.1 CDS spoVAB NC_009848.1 2112611 2113027 R stage V sporulation protein AB complement(2112611..2113027) Bacillus pumilus SAFR-032 5621343 YP_001487305.1 CDS spoVAA NC_009848.1 2113017 2113637 R stage V sporulation protein AA complement(2113017..2113637) Bacillus pumilus SAFR-032 5621344 YP_001487306.1 CDS sigF NC_009848.1 2113752 2114519 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the prespore at the onset of sporulation. Interaction with spoIIAB inhibits sigma F activity throughout the cell before the formation of the asymmetric septum; after septation the interaction is confined to the mother cell, and sigma F activity is released in the prespore.; sporulation sigma factor SigF complement(2113752..2114519) Bacillus pumilus SAFR-032 5621345 YP_001487307.1 CDS spoIIAB NC_009848.1 2114533 2114973 R binds to sigma F preventing its association with RNA polymerase during sporulation; anti-sigma F factor complement(2114533..2114973) Bacillus pumilus SAFR-032 5621346 YP_001487308.1 CDS spoIIAA NC_009848.1 2114970 2115323 R stage II sporulation protein AA, antagonist of SpoIIAB; stage II sporulation anti-anti-sigma factor complement(2114970..2115323) Bacillus pumilus SAFR-032 5621347 YP_001487309.1 CDS dacF NC_009848.1 2115485 2116687 R S11 family D-Ala-D-Ala serine carboxypeptidase; serine-type D-Ala-D-Ala carboxypeptidase complement(2115485..2116687) Bacillus pumilus SAFR-032 5621348 YP_001487310.1 CDS punA NC_009848.1 2116797 2117609 R DeoD YqkO Pnp; purine-nucleoside phosphorylase complement(2116797..2117609) Bacillus pumilus SAFR-032 5621349 YP_001487311.1 CDS drm NC_009848.1 2117621 2118805 R catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase complement(2117621..2118805) Bacillus pumilus SAFR-032 5621350 YP_001487312.1 CDS xerD NC_009848.1 2118957 2119847 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD complement(2118957..2119847) Bacillus pumilus SAFR-032 5621351 YP_001487313.1 CDS BPUM_2083 NC_009848.1 2119854 2120090 R hypothetical protein complement(2119854..2120090) Bacillus pumilus SAFR-032 5621352 YP_001487314.1 CDS fur NC_009848.1 2120199 2120651 R Fur family transcriptional regulator Fur complement(2120199..2120651) Bacillus pumilus SAFR-032 5621353 YP_001487315.1 CDS spoIIM NC_009848.1 2120770 2121417 R stage II sporulation protein M complement(2120770..2121417) Bacillus pumilus SAFR-032 5621354 YP_001487316.1 CDS yqkK NC_009848.1 2122774 2122995 R hypothetical protein complement(2122774..2122995) Bacillus pumilus SAFR-032 5621356 YP_001487317.1 CDS yybD NC_009848.1 2123064 2123516 R acetyltransferase complement(2123064..2123516) Bacillus pumilus SAFR-032 5621357 YP_001487318.1 CDS yqxK NC_009848.1 2123503 2124684 R hypothetical protein complement(2123503..2124684) Bacillus pumilus SAFR-032 5621358 YP_001487319.1 CDS nudF NC_009848.1 2124681 2125238 R ADP-ribose diphosphatase complement(2124681..2125238) Bacillus pumilus SAFR-032 5621359 YP_001487320.1 CDS yqkF NC_009848.1 2125406 2126329 D Tas family dehydrogenase 2125406..2126329 Bacillus pumilus SAFR-032 5621360 YP_001487321.1 CDS BPUM_2092 NC_009848.1 2126487 2126876 R hypothetical protein complement(2126487..2126876) Bacillus pumilus SAFR-032 5621361 YP_001487322.1 CDS BPUM_2093 NC_009848.1 2127048 2127197 R hypothetical protein complement(2127048..2127197) Bacillus pumilus SAFR-032 5621362 YP_001487323.1 CDS BPUM_2094 NC_009848.1 2127249 2127398 D hypothetical protein 2127249..2127398 Bacillus pumilus SAFR-032 5621363 YP_001487324.1 CDS yqkD NC_009848.1 2127395 2128327 D serine peptidase 2127395..2128327 Bacillus pumilus SAFR-032 5621364 YP_001487325.1 CDS rapA3 NC_009848.1 2128354 2129616 R aspartate phosphatase response regulator complement(2128354..2129616) Bacillus pumilus SAFR-032 5621365 YP_001487326.1 CDS yqkC NC_009848.1 2129922 2130161 R hypothetical protein complement(2129922..2130161) Bacillus pumilus SAFR-032 5621366 YP_001487327.1 CDS yqkB NC_009848.1 2130174 2130500 R hypothetical protein complement(2130174..2130500) Bacillus pumilus SAFR-032 5621367 YP_001487328.1 CDS yqkA NC_009848.1 2130616 2131593 R possible GrpB family protein; hypothetical protein complement(2130616..2131593) Bacillus pumilus SAFR-032 5621368 YP_001487329.1 CDS yqjY NC_009848.1 2131590 2132090 R possible GNAT family acetyltransferase; hypothetical protein complement(2131590..2132090) Bacillus pumilus SAFR-032 5621369 YP_001487330.1 CDS yfmQ NC_009848.1 2132344 2132793 D hypothetical protein 2132344..2132793 Bacillus pumilus SAFR-032 5621370 YP_001487331.1 CDS polY2 NC_009848.1 2132943 2134175 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 2132943..2134175 Bacillus pumilus SAFR-032 5621371 YP_001487332.1 CDS BPUM_2103 NC_009848.1 2134191 2134535 D YqjX; hypothetical protein 2134191..2134535 Bacillus pumilus SAFR-032 5621372 YP_001487333.1 CDS BPUM_2104 NC_009848.1 2134725 2135960 D YqjV; major facilitator superfamily sugar:cation symporter 2134725..2135960 Bacillus pumilus SAFR-032 5621373 YP_001487334.1 CDS coaA NC_009848.1 2135991 2136872 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(2135991..2136872) Bacillus pumilus SAFR-032 5621374 YP_001487335.1 CDS BPUM_2106 NC_009848.1 2137137 2138465 D FAD-dependent pyridine nucleotide-disulfide oxidoreductase/NADH dehydrogenase; NADH dehydrogenase 2137137..2138465 Bacillus pumilus SAFR-032 5621375 YP_001487336.1 CDS yqjQ NC_009848.1 2138531 2139307 R dehydrogenase complement(2138531..2139307) Bacillus pumilus SAFR-032 5621376 YP_001487337.1 CDS yqjP NC_009848.1 2139320 2140270 R zinc metallohydrolase complement(2139320..2140270) Bacillus pumilus SAFR-032 5621377 YP_001487338.1 CDS proI NC_009848.1 2140693 2141520 D pyrroline-5-carboxylate reductase 2 2140693..2141520 Bacillus pumilus SAFR-032 5621378 YP_001487339.1 CDS BPUM_2110 NC_009848.1 2141674 2141946 D hypothetical protein 2141674..2141946 Bacillus pumilus SAFR-032 5621379 YP_001487340.1 CDS yqjN NC_009848.1 2142101 2143714 R possible arginine degradation protein RocB; M20A subfamily peptidase complement(2142101..2143714) Bacillus pumilus SAFR-032 5621380 YP_001487341.1 CDS yqjM NC_009848.1 2143856 2144872 D catalyzes the reduction of alpha, beta-unsaturated aldehydes and ketones; reduces the nitro group nitroester and nitroaromatic compounds; NADPH dehydrogenase NamA 2143856..2144872 Bacillus pumilus SAFR-032 5621381 YP_001487342.1 CDS yqjL NC_009848.1 2144993 2145757 D hydrolase 2144993..2145757 Bacillus pumilus SAFR-032 5621382 YP_001487343.1 CDS BPUM_2114 NC_009848.1 2145803 2147110 R aminotransferase complement(2145803..2147110) Bacillus pumilus SAFR-032 5621383 YP_001487344.1 CDS rnz NC_009848.1 2147250 2148179 R member of metallo-beta-lactamase family; the purified enzyme from Escherichia coli forms dimeric zinc phosphodiesterase; in Bacillus subtilis this protein is a 3'-tRNA processing endoribonuclease and is essential while in Escherichia coli it is not; associates with two zinc ions; ribonuclease Z complement(2147250..2148179) Bacillus pumilus SAFR-032 5621384 YP_001487345.1 CDS zwf NC_009848.1 2148402 2149877 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2148402..2149877 Bacillus pumilus SAFR-032 5621385 YP_001487346.1 CDS ydhQ NC_009848.1 2149924 2150646 R transcriptional regulator complement(2149924..2150646) Bacillus pumilus SAFR-032 5621386 YP_001487347.1 CDS ydhP NC_009848.1 2150800 2152206 R 6-phospho-beta-glucosidase complement(2150800..2152206) Bacillus pumilus SAFR-032 5621387 YP_001487348.1 CDS ydhO NC_009848.1 2152190 2153536 R spore transporter YdhO; PTS family cellobiose porter component IIC complement(2152190..2153536) Bacillus pumilus SAFR-032 5621388 YP_001487349.1 CDS ydhN NC_009848.1 2153562 2153894 R PTS system cellobiose transporter subunit IIA complement(2153562..2153894) Bacillus pumilus SAFR-032 5621389 YP_001487350.1 CDS ydhM NC_009848.1 2153898 2154209 R PTS family cellobiose porter component IIB complement(2153898..2154209) Bacillus pumilus SAFR-032 5621390 YP_001487351.1 CDS gdh NC_009848.1 2154352 2155137 R Converts glucose to D-glucono-1,5 lactone; glucose-1-dehydrogenase complement(2154352..2155137) Bacillus pumilus SAFR-032 5621391 YP_001487352.1 CDS glcU NC_009848.1 2155150 2155998 R glucose uptake protein YcxE; DMT superfamily drug/metabolite transporter complement(2155150..2155998) Bacillus pumilus SAFR-032 5621392 YP_001487353.1 CDS yqjI NC_009848.1 2156116 2157525 R catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase complement(2156116..2157525) Bacillus pumilus SAFR-032 5621393 YP_001487354.1 CDS polY1 NC_009848.1 2157624 2158868 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(2157624..2158868) Bacillus pumilus SAFR-032 5621394 YP_001487355.1 CDS cynD NC_009848.1 2159014 2160021 R cyanide dihydratase complement(2159014..2160021) Bacillus pumilus SAFR-032 5621395 YP_001487356.1 CDS yqzJ NC_009848.1 2160187 2160468 D hypothetical protein 2160187..2160468 Bacillus pumilus SAFR-032 5621396 YP_001487357.1 CDS oxaA2 NC_009848.1 2160496 2161314 D involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site; OxaA-like protein precursor 2160496..2161314 Bacillus pumilus SAFR-032 5621397 YP_001487358.1 CDS BPUM_2129 NC_009848.1 2161555 2162019 R chemotaxis signal transduction protein complement(2161555..2162019) Bacillus pumilus SAFR-032 5621398 YP_001487359.1 CDS yqjE NC_009848.1 2162034 2163155 R M20B subfamily peptidase complement(2162034..2163155) Bacillus pumilus SAFR-032 5621399 YP_001487360.1 CDS yqjD NC_009848.1 2163172 2164641 R propionyl-CoA carboxylase subunit beta complement(2163172..2164641) Bacillus pumilus SAFR-032 5621400 YP_001487361.1 CDS yqjC NC_009848.1 2164628 2165050 R glyoxalase/bleomycin resistance protein/dioxygenase family protein complement(2164628..2165050) Bacillus pumilus SAFR-032 5621401 YP_001487362.1 CDS BPUM_2133 NC_009848.1 2165042 2165245 D hypothetical protein 2165042..2165245 Bacillus pumilus SAFR-032 5621402 YP_001487363.1 CDS BPUM_2134 NC_009848.1 2165284 2165793 R hypothetical protein complement(2165284..2165793) Bacillus pumilus SAFR-032 5621403 YP_001487364.1 CDS yqjA NC_009848.1 2165846 2166799 R hypothetical protein complement(2165846..2166799) Bacillus pumilus SAFR-032 5621404 YP_001487365.1 CDS yqiZ NC_009848.1 2166921 2167643 R ABC transporter ATP-binding protein complement(2166921..2167643) Bacillus pumilus SAFR-032 5621405 YP_001487366.1 CDS yqiY NC_009848.1 2167636 2168328 R ABC transporter ATP-binding protein complement(2167636..2168328) Bacillus pumilus SAFR-032 5621406 YP_001487367.1 CDS yqiX NC_009848.1 2168419 2169183 R amino acid ABC transporter ATP-binding protein complement(2168419..2169183) Bacillus pumilus SAFR-032 5621407 YP_001487368.1 CDS yqiW NC_009848.1 2169379 2169816 R hypothetical protein complement(2169379..2169816) Bacillus pumilus SAFR-032 5621408 YP_001487369.1 CDS bmrU NC_009848.1 2169987 2170880 D diacylglycerol kinase 2169987..2170880 Bacillus pumilus SAFR-032 5621409 YP_001487370.1 CDS yesK NC_009848.1 2170896 2171288 R hypothetical protein complement(2170896..2171288) Bacillus pumilus SAFR-032 5621410 YP_001487371.1 CDS bfmBB NC_009848.1 2171254 2172510 R BkdB; branched-chain alpha-keto acid dehydrogenase subunit E2 complement(2171254..2172510) Bacillus pumilus SAFR-032 5621411 YP_001487372.1 CDS bfmBAB NC_009848.1 2172529 2173512 R BkdA2; 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) beta subunit complement(2172529..2173512) Bacillus pumilus SAFR-032 5621412 YP_001487373.1 CDS bfmBAA NC_009848.1 2173525 2174517 R BkdA1; 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) alpha subunit complement(2173525..2174517) Bacillus pumilus SAFR-032 5621413 YP_001487374.1 CDS bfmBC NC_009848.1 2174535 2175959 R E3 component of the branched-chain alpha-keto acid dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(2174535..2175959) Bacillus pumilus SAFR-032 5621414 YP_001487375.1 CDS buk NC_009848.1 2175949 2177070 R catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; butyrate kinase complement(2175949..2177070) Bacillus pumilus SAFR-032 5621415 YP_001487376.1 CDS bcd NC_009848.1 2177104 2178198 R YqiT; leucine dehydrogenase complement(2177104..2178198) Bacillus pumilus SAFR-032 5621416 YP_001487377.1 CDS BPUM_2148 NC_009848.1 2178224 2179117 R catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate; phosphate butyryltransferase complement(2178224..2179117) Bacillus pumilus SAFR-032 5621417 YP_001487378.1 CDS rocR NC_009848.1 2179244 2181316 R sigma L-dependent transcriptional regulator; transcriptional regulator complement(2179244..2181316) Bacillus pumilus SAFR-032 5621418 YP_001487379.1 CDS yqzF NC_009848.1 2181466 2181702 D hypothetical protein 2181466..2181702 Bacillus pumilus SAFR-032 5621419 YP_001487380.1 CDS glpQ NC_009848.1 2181738 2182475 R glycerophosphodiester phosphodiesterase complement(2181738..2182475) Bacillus pumilus SAFR-032 5621420 YP_001487381.1 CDS BPUM_2152 NC_009848.1 2182706 2183806 R hypothetical protein complement(2182706..2183806) Bacillus pumilus SAFR-032 5621421 YP_001487382.1 CDS BPUM_2153 NC_009848.1 2183794 2184084 R hypothetical protein complement(2183794..2184084) Bacillus pumilus SAFR-032 5621422 YP_001487383.1 CDS spo0A NC_009848.1 2184263 2185066 R stage 0 sporulation protein A complement(2184263..2185066) Bacillus pumilus SAFR-032 5621423 YP_001487384.1 CDS spoIVB NC_009848.1 2185352 2186629 R stage IV sporulation S55 family serine peptidase complement(2185352..2186629) Bacillus pumilus SAFR-032 5621424 YP_001487385.1 CDS recN NC_009848.1 2186828 2188564 R DNA repair protein RecN complement(2186828..2188564) Bacillus pumilus SAFR-032 5621425 YP_001487386.1 CDS ahrC NC_009848.1 2188598 2189047 R regulates arginine biosynthesis when complexed with arginine by binding at site that overlap the promotors of the arginine biosynthesis genes; arginine repressor complement(2188598..2189047) Bacillus pumilus SAFR-032 5621426 YP_001487387.1 CDS yqxC NC_009848.1 2189208 2190062 R hemolysin A complement(2189208..2190062) Bacillus pumilus SAFR-032 5621427 YP_001487388.1 CDS dxs NC_009848.1 2190059 2191960 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(2190059..2191960) Bacillus pumilus SAFR-032 5621428 YP_001487389.1 CDS yqiD NC_009848.1 2192111 2193001 R geranyltranstransferase complement(2192111..2193001) Bacillus pumilus SAFR-032 5621429 YP_001487390.1 CDS xseB NC_009848.1 2192991 2193251 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(2192991..2193251) Bacillus pumilus SAFR-032 5621430 YP_001487391.1 CDS xseA NC_009848.1 2193248 2194594 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(2193248..2194594) Bacillus pumilus SAFR-032 5621431 YP_001487392.1 CDS folD NC_009848.1 2194665 2195516 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(2194665..2195516) Bacillus pumilus SAFR-032 5621432 YP_001487393.1 CDS nusB NC_009848.1 2195528 2195923 R Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB complement(2195528..2195923) Bacillus pumilus SAFR-032 5621433 YP_001487394.1 CDS yqhY NC_009848.1 2196134 2196541 R hypothetical protein complement(2196134..2196541) Bacillus pumilus SAFR-032 5621434 YP_001487395.1 CDS accC NC_009848.1 2196567 2197916 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(2196567..2197916) Bacillus pumilus SAFR-032 5621435 YP_001487396.1 CDS accB NC_009848.1 2197928 2198410 R composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit complement(2197928..2198410) Bacillus pumilus SAFR-032 5621436 YP_001487397.1 CDS spoIIIAH NC_009848.1 2198607 2199242 R stage III sporulation protein AH complement(2198607..2199242) Bacillus pumilus SAFR-032 5621437 YP_001487398.1 CDS spoIIIAG NC_009848.1 2199239 2199910 R stage III sporulation protein AG complement(2199239..2199910) Bacillus pumilus SAFR-032 5621438 YP_001487399.1 CDS spoIIIAF NC_009848.1 2199903 2200535 R stage III sporulation protein AF complement(2199903..2200535) Bacillus pumilus SAFR-032 5621439 YP_001487400.1 CDS spoIIIAE NC_009848.1 2200550 2201743 R stage III sporulation protein AE complement(2200550..2201743) Bacillus pumilus SAFR-032 5621440 YP_001487401.1 CDS spoIIIAD NC_009848.1 2201763 2202071 R stage III sporulation protein AD complement(2201763..2202071) Bacillus pumilus SAFR-032 5621441 YP_001487402.1 CDS spoIIIAC NC_009848.1 2202173 2202379 R stage III sporulation protein AC complement(2202173..2202379) Bacillus pumilus SAFR-032 5621442 YP_001487403.1 CDS spoIIIAB NC_009848.1 2202399 2202914 R necessary for complete engulfment of forespore; stage III sporulation protein SpoAB complement(2202399..2202914) Bacillus pumilus SAFR-032 5621443 YP_001487404.1 CDS spoIIIAA NC_009848.1 2202908 2203831 R stage III sporulation protein AA complement(2202908..2203831) Bacillus pumilus SAFR-032 5621444 YP_001487405.1 CDS yqhV NC_009848.1 2203898 2204179 R hypothetical protein complement(2203898..2204179) Bacillus pumilus SAFR-032 5621445 YP_001487406.1 CDS efp NC_009848.1 2204559 2205116 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(2204559..2205116) Bacillus pumilus SAFR-032 5621446 YP_001487407.1 CDS yqhT NC_009848.1 2205142 2206203 R M24B subfamily peptidase complement(2205142..2206203) Bacillus pumilus SAFR-032 5621447 YP_001487408.1 CDS aroQ NC_009848.1 2206200 2206643 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(2206200..2206643) Bacillus pumilus SAFR-032 5621448 YP_001487409.1 CDS yqhR NC_009848.1 2206752 2207279 R hypothetical protein complement(2206752..2207279) Bacillus pumilus SAFR-032 5621449 YP_001487410.1 CDS yqhQ NC_009848.1 2207502 2208458 D hypothetical protein 2207502..2208458 Bacillus pumilus SAFR-032 5621450 YP_001487411.1 CDS yqhP NC_009848.1 2208497 2208892 D hypothetical protein 2208497..2208892 Bacillus pumilus SAFR-032 5621451 YP_001487412.1 CDS yqhO NC_009848.1 2208889 2209764 R esterase complement(2208889..2209764) Bacillus pumilus SAFR-032 5621452 YP_001487413.1 CDS BPUM_2184 NC_009848.1 2209868 2210302 R involved in manganese homeostasis; activates the transcription of the mntABCD operon; manganese transport transcriptional regulator complement(2209868..2210302) Bacillus pumilus SAFR-032 5621453 YP_001487414.1 CDS BPUM_2185 NC_009848.1 2210389 2211225 R YqhM; lipoate protein ligase A complement(2210389..2211225) Bacillus pumilus SAFR-032 5621454 YP_001487415.1 CDS yqhL NC_009848.1 2211440 2211826 D possible rhodanese homology domain containing protein; hypothetical protein 2211440..2211826 Bacillus pumilus SAFR-032 5621455 YP_001487416.1 CDS gcvPB NC_009848.1 2211870 2213360 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 complement(2211870..2213360) Bacillus pumilus SAFR-032 5621456 YP_001487417.1 CDS gcvPA NC_009848.1 2213320 2214666 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 complement(2213320..2214666) Bacillus pumilus SAFR-032 5621457 YP_001487418.1 CDS gcvT NC_009848.1 2214683 2215780 R glycine cleavage system protein T; aminomethyltransferase complement(2214683..2215780) Bacillus pumilus SAFR-032 5621458 YP_001487419.1 CDS yqhH NC_009848.1 2216342 2218012 D possible DEAD/DEAH box helicase; SNF2 family helicase 2216342..2218012 Bacillus pumilus SAFR-032 5621459 YP_001487420.1 CDS yqhG NC_009848.1 2218027 2218824 D hypothetical protein 2218027..2218824 Bacillus pumilus SAFR-032 5621460 YP_001487421.1 CDS sinI NC_009848.1 2219007 2219171 D SinR antagonist 2219007..2219171 Bacillus pumilus SAFR-032 5621461 YP_001487422.1 CDS sinR NC_009848.1 2219205 2219540 D transcriptional regulator SinR 2219205..2219540 Bacillus pumilus SAFR-032 5621462 YP_001487423.1 CDS cotN NC_009848.1 2219608 2220408 R spore coat-associated protein TasA,YqhF; translocation-dependent anti spore component complement(2219608..2220408) Bacillus pumilus SAFR-032 5621463 YP_001487424.1 CDS sipW NC_009848.1 2220466 2221038 R signal peptidase complement(2220466..2221038) Bacillus pumilus SAFR-032 5621464 YP_001487425.1 CDS yqxM NC_009848.1 2221090 2221617 R hypothetical protein complement(2221090..2221617) Bacillus pumilus SAFR-032 5621465 YP_001487426.1 CDS yqzG NC_009848.1 2221869 2222195 D hypothetical protein 2221869..2222195 Bacillus pumilus SAFR-032 5621466 YP_001487427.1 CDS yqzE NC_009848.1 2222230 2222424 R hypothetical protein complement(2222230..2222424) Bacillus pumilus SAFR-032 5621467 YP_001487428.1 CDS BPUM_2199 NC_009848.1 2222484 2222867 R hypothetical protein complement(2222484..2222867) Bacillus pumilus SAFR-032 5621468 YP_001487429.1 CDS comGF NC_009848.1 2222864 2223313 R competence protein GF complement(2222864..2223313) Bacillus pumilus SAFR-032 5621469 YP_001487430.1 CDS comGE NC_009848.1 2223303 2223620 R competence protein GE complement(2223303..2223620) Bacillus pumilus SAFR-032 5621470 YP_001487431.1 CDS comGD NC_009848.1 2223604 2223999 R competence protein GD complement(2223604..2223999) Bacillus pumilus SAFR-032 5621471 YP_001487432.1 CDS comGC NC_009848.1 2224043 2224336 R exogenous DNA-binding protein; competence protein GC complement(2224043..2224336) Bacillus pumilus SAFR-032 5621472 YP_001487433.1 CDS comGB NC_009848.1 2224353 2225393 R competence protein GB complement(2224353..2225393) Bacillus pumilus SAFR-032 5621473 YP_001487434.1 CDS comGA NC_009848.1 2225374 2226444 R competence protein GA complement(2225374..2226444) Bacillus pumilus SAFR-032 5621474 YP_001487435.1 CDS yqhA NC_009848.1 2226622 2227494 R possible stage II sporulation anti-anti-sigma factor SpoIIAA; hypothetical protein complement(2226622..2227494) Bacillus pumilus SAFR-032 5621475 YP_001487436.1 CDS yqgZ NC_009848.1 2227717 2228097 R ArsC family transcription regulator complement(2227717..2228097) Bacillus pumilus SAFR-032 5621477 YP_001487437.1 CDS yqgY NC_009848.1 2228311 2228553 D hypothetical protein 2228311..2228553 Bacillus pumilus SAFR-032 5621478 YP_001487438.1 CDS yqgX NC_009848.1 2228600 2229244 R possible zinc (Zn) dependent hydrolase; hypothetical protein complement(2228600..2229244) Bacillus pumilus SAFR-032 5621479 YP_001487439.1 CDS yqgW NC_009848.1 2229372 2229569 D hypothetical protein 2229372..2229569 Bacillus pumilus SAFR-032 5621480 YP_001487440.1 CDS yqgV NC_009848.1 2229794 2230108 R hypothetical protein complement(2229794..2230108) Bacillus pumilus SAFR-032 5621481 YP_001487441.1 CDS yvqJ2 NC_009848.1 2230187 2231641 R major facilitator superfamily transporter complement(2230187..2231641) Bacillus pumilus SAFR-032 5621482 YP_001487442.1 CDS yqgT NC_009848.1 2231598 2232722 R possible zinc (Zn) peptidase; M14 family gamma-D-glutamyl-{L}-meso-diaminopimelate peptidase 1 complement(2231598..2232722) Bacillus pumilus SAFR-032 5621483 YP_001487443.1 CDS yqgS NC_009848.1 2232809 2234728 R MdoB; phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase complement(2232809..2234728) Bacillus pumilus SAFR-032 5621484 YP_001487444.1 CDS glcK NC_009848.1 2234942 2235895 R transcriptional regulator NagC; glucokinase complement(2234942..2235895) Bacillus pumilus SAFR-032 5621485 YP_001487445.1 CDS yqgQ NC_009848.1 2235909 2236124 R hypothetical protein complement(2235909..2236124) Bacillus pumilus SAFR-032 5621486 YP_001487446.1 CDS yqgP NC_009848.1 2236183 2237721 R possible rhomboid family protease; peptidase complement(2236183..2237721) Bacillus pumilus SAFR-032 5621487 YP_001487447.1 CDS yqgO NC_009848.1 2237808 2237984 R hypothetical protein complement(2237808..2237984) Bacillus pumilus SAFR-032 5621488 YP_001487448.1 CDS yqgN NC_009848.1 2238218 2238778 R 5-formyltetrahydrofolate cyclo-ligase complement(2238218..2238778) Bacillus pumilus SAFR-032 5621489 YP_001487449.1 CDS rpmG NC_009848.1 2238827 2238976 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(2238827..2238976) Bacillus pumilus SAFR-032 5621490 YP_001487450.1 CDS yqzD NC_009848.1 2239396 2239743 D hypothetical protein 2239396..2239743 Bacillus pumilus SAFR-032 5621491 YP_001487451.1 CDS yqzC NC_009848.1 2239740 2240240 D hypothetical protein 2239740..2240240 Bacillus pumilus SAFR-032 5621492 YP_001487452.1 CDS pstBB NC_009848.1 2240283 2241074 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein complement(2240283..2241074) Bacillus pumilus SAFR-032 5621493 YP_001487453.1 CDS pstBA NC_009848.1 2241080 2241892 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate ABC transporter ATP-binding protein complement(2241080..2241892) Bacillus pumilus SAFR-032 5621494 YP_001487454.1 CDS pstA NC_009848.1 2241916 2242800 R phosphate ABC transporter ATP-binding protein complement(2241916..2242800) Bacillus pumilus SAFR-032 5621495 YP_001487455.1 CDS pstC NC_009848.1 2242800 2243726 R phosphate ABC transporter ATP-binding protein complement(2242800..2243726) Bacillus pumilus SAFR-032 5621496 YP_001487456.1 CDS pstS NC_009848.1 2243806 2244723 R phosphate ABC transporter ATP-binding protein complement(2243806..2244723) Bacillus pumilus SAFR-032 5621497 YP_001487457.1 CDS pbpA NC_009848.1 2244938 2247139 R cell division protein FtsI; penicillin-binding protein 2A complement(2244938..2247139) Bacillus pumilus SAFR-032 5621498 YP_001487458.1 CDS yqgE NC_009848.1 2247196 2248482 R major facilitator superfamily sugar transporter complement(2247196..2248482) Bacillus pumilus SAFR-032 5621499 YP_001487459.1 CDS sodA NC_009848.1 2248605 2249213 R manganese (Mn) superoxide dismutase SodA complement(2248605..2249213) Bacillus pumilus SAFR-032 5621500 YP_001487460.1 CDS yqgC NC_009848.1 2249400 2249885 R hypothetical protein complement(2249400..2249885) Bacillus pumilus SAFR-032 5621501 YP_001487461.1 CDS yqgB NC_009848.1 2250029 2250799 D hypothetical protein 2250029..2250799 Bacillus pumilus SAFR-032 5621502 YP_001487462.1 CDS BPUM_2233 NC_009848.1 2250855 2251484 R ribosomal-protein-alanine N-acetyltransferase complement(2250855..2251484) Bacillus pumilus SAFR-032 5621503 YP_001487463.1 CDS yqfZ NC_009848.1 2251590 2251892 D possible LysM family peptidoglycan catabolism protein; hypothetical protein 2251590..2251892 Bacillus pumilus SAFR-032 5621504 YP_001487464.1 CDS ispG NC_009848.1 2251998 2253110 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 2251998..2253110 Bacillus pumilus SAFR-032 5621505 YP_001487465.1 CDS yqfX NC_009848.1 2253157 2253519 R hypothetical protein complement(2253157..2253519) Bacillus pumilus SAFR-032 5621506 YP_001487466.1 CDS yqfW NC_009848.1 2253659 2254237 D hypothetical protein 2253659..2254237 Bacillus pumilus SAFR-032 5621507 YP_001487467.1 CDS BPUM_2238 NC_009848.1 2254457 2255374 R NagC/XylR family transcriptional regulator complement(2254457..2255374) Bacillus pumilus SAFR-032 5621508 YP_001487468.1 CDS BPUM_2239 NC_009848.1 2255596 2256210 R internalin G complement(2255596..2256210) Bacillus pumilus SAFR-032 5621509 YP_001487469.1 CDS BPUM_2240 NC_009848.1 2256247 2256408 R hypothetical protein complement(2256247..2256408) Bacillus pumilus SAFR-032 5621510 YP_001487470.1 CDS zur NC_009848.1 2256646 2257074 R zinc-specific metalloregulatory protein YqfV; Fur family transcriptional regulator Zur complement(2256646..2257074) Bacillus pumilus SAFR-032 5621511 YP_001487471.1 CDS yceA NC_009848.1 2257052 2257912 R ABC transporter ATP-binding protein complement(2257052..2257912) Bacillus pumilus SAFR-032 5621512 YP_001487472.1 CDS ycdI NC_009848.1 2257912 2258688 R iron ABC transporter permease complement(2257912..2258688) Bacillus pumilus SAFR-032 5621513 YP_001487473.1 CDS yqfU NC_009848.1 2258824 2259702 R hypothetical protein complement(2258824..2259702) Bacillus pumilus SAFR-032 5621514 YP_001487474.1 CDS yqfT NC_009848.1 2259842 2260096 D hypothetical protein 2259842..2260096 Bacillus pumilus SAFR-032 5621515 YP_001487475.1 CDS nfo NC_009848.1 2260145 2261035 R Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; endonuclease IV complement(2260145..2261035) Bacillus pumilus SAFR-032 5621516 YP_001487476.1 CDS yqfR NC_009848.1 2261049 2262368 R ATP-dependent RNA helicase complement(2261049..2262368) Bacillus pumilus SAFR-032 5621517 YP_001487477.1 CDS yqfQ NC_009848.1 2262524 2263225 D spore protein YqfQ 2262524..2263225 Bacillus pumilus SAFR-032 5621518 YP_001487478.1 CDS ispH NC_009848.1 2263383 2264327 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2263383..2264327 Bacillus pumilus SAFR-032 5621519 YP_001487479.1 CDS yqfO NC_009848.1 2264366 2265487 R hypothetical protein complement(2264366..2265487) Bacillus pumilus SAFR-032 5621520 YP_001487480.1 CDS yqfN NC_009848.1 2265480 2266196 R possible S-adenosylmethionine (SAM)-dependent methyltransferase; hypothetical protein complement(2265480..2266196) Bacillus pumilus SAFR-032 5621521 YP_001487481.1 CDS cccA NC_009848.1 2266307 2266594 R cytochrome c550 complement(2266307..2266594) Bacillus pumilus SAFR-032 5621522 YP_001487482.1 CDS sigA NC_009848.1 2266970 2268091 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; primary sigma factor of bacterium; RNA polymerase sigma factor RpoD complement(2266970..2268091) Bacillus pumilus SAFR-032 5621523 YP_001487483.1 CDS dnaG NC_009848.1 2268293 2270122 R synthesizes RNA primers at the replication forks; DNA primase complement(2268293..2270122) Bacillus pumilus SAFR-032 5621524 YP_001487484.1 CDS yqxD NC_009848.1 2270156 2270656 R YqfM; hypothetical protein complement(2270156..2270656) Bacillus pumilus SAFR-032 5621525 YP_001487485.1 CDS yqfL NC_009848.1 2270918 2271739 R hypothetical protein complement(2270918..2271739) Bacillus pumilus SAFR-032 5621526 YP_001487486.1 CDS yqzB NC_009848.1 2271765 2272502 R possible CBS domain protein; transcriptional regulator complement(2271765..2272502) Bacillus pumilus SAFR-032 5621527 YP_001487487.1 CDS glyS NC_009848.1 2272570 2274615 R glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta complement(2272570..2274615) Bacillus pumilus SAFR-032 5621528 YP_001487488.1 CDS glyQ NC_009848.1 2274608 2275495 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(2274608..2275495) Bacillus pumilus SAFR-032 5621529 YP_001487489.1 CDS recO NC_009848.1 2275825 2276595 R involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO complement(2275825..2276595) Bacillus pumilus SAFR-032 5621530 YP_001487490.1 CDS BPUM_2261 NC_009848.1 2276631 2276774 R hypothetical protein complement(2276631..2276774) Bacillus pumilus SAFR-032 5621531 YP_001487491.1 CDS era NC_009848.1 2276924 2277829 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(2276924..2277829) Bacillus pumilus SAFR-032 5621532 YP_001487492.1 CDS cdd NC_009848.1 2277822 2278220 R cytidine deaminase complement(2277822..2278220) Bacillus pumilus SAFR-032 5621533 YP_001487493.1 CDS yqfG NC_009848.1 2278698 2279177 R putative metalloprotease complement(2278698..2279177) Bacillus pumilus SAFR-032 5621534 YP_001487494.1 CDS yqfF NC_009848.1 2279178 2281370 R possible metal-dependent phosphohydrolase; HD family hydrolase complement(2279178..2281370) Bacillus pumilus SAFR-032 5621535 YP_001487495.1 CDS phoH2 NC_009848.1 2281404 2282363 R YqfE; phosphate starvation-induced protein complement(2281404..2282363) Bacillus pumilus SAFR-032 5621536 YP_001487496.1 CDS yqfD NC_009848.1 2282367 2283557 R stage IV sporulation protein complement(2282367..2283557) Bacillus pumilus SAFR-032 5621537 YP_001487497.1 CDS yqfC NC_009848.1 2283576 2283857 R sporulation protein YqfC complement(2283576..2283857) Bacillus pumilus SAFR-032 5621538 YP_001487498.1 CDS BPUM_2269 NC_009848.1 2284074 2285123 R hypothetical protein complement(2284074..2285123) Bacillus pumilus SAFR-032 5621539 YP_001487499.1 CDS yqfB NC_009848.1 2285180 2285653 R hypothetical protein complement(2285180..2285653) Bacillus pumilus SAFR-032 5621540 YP_001487500.1 CDS yqfA NC_009848.1 2285685 2286677 R hypothetical protein complement(2285685..2286677) Bacillus pumilus SAFR-032 5621541 YP_001487501.1 CDS yqeZ NC_009848.1 2286705 2288018 R possible membrane-bound ClpP family serine protease; serine peptidase complement(2286705..2288018) Bacillus pumilus SAFR-032 5621542 YP_001487502.1 CDS yqeY NC_009848.1 2288160 2288609 R hypothetical protein complement(2288160..2288609) Bacillus pumilus SAFR-032 5621543 YP_001487503.1 CDS rpsU NC_009848.1 2288624 2288797 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(2288624..2288797) Bacillus pumilus SAFR-032 5621544 YP_001487504.1 CDS yqeW NC_009848.1 2288980 2289909 D PnaS family phosphate:sodium (Na+) symporter 2288980..2289909 Bacillus pumilus SAFR-032 5621545 YP_001487505.1 CDS miaB NC_009848.1 2289950 2291311 R YqeV; 2-methylthioadenine synthetase complement(2289950..2291311) Bacillus pumilus SAFR-032 5621546 YP_001487506.1 CDS yqeU NC_009848.1 2291308 2292078 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(2291308..2292078) Bacillus pumilus SAFR-032 5621547 YP_001487507.1 CDS prmA NC_009848.1 2292102 2293037 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; 50S ribosomal protein L11 methyltransferase complement(2292102..2293037) Bacillus pumilus SAFR-032 5621548 YP_001487508.1 CDS dnaJ NC_009848.1 2293060 2294193 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(2293060..2294193) Bacillus pumilus SAFR-032 5621549 YP_001487509.1 CDS dnaK NC_009848.1 2294359 2296200 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(2294359..2296200) Bacillus pumilus SAFR-032 5621550 YP_001487510.1 CDS grpE NC_009848.1 2296225 2296782 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(2296225..2296782) Bacillus pumilus SAFR-032 5621551 YP_001487511.1 CDS hrcA NC_009848.1 2296846 2297877 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(2296846..2297877) Bacillus pumilus SAFR-032 5621552 YP_001487512.1 CDS hemN NC_009848.1 2297959 2299098 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(2297959..2299098) Bacillus pumilus SAFR-032 5621553 YP_001487513.1 CDS lepA NC_009848.1 2299216 2301054 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(2299216..2301054) Bacillus pumilus SAFR-032 5621554 YP_001487514.1 CDS yqeP NC_009848.1 2301186 2301518 R YqxA; hypothetical protein complement(2301186..2301518) Bacillus pumilus SAFR-032 5621555 YP_001487515.1 CDS spoIIP NC_009848.1 2301533 2302741 R stage II sporulation protein P complement(2301533..2302741) Bacillus pumilus SAFR-032 5621556 YP_001487516.1 CDS gpr NC_009848.1 2302808 2303923 R Initiates the rapid degradation of small, acid-soluble proteins during spore germination; germination protease complement(2302808..2303923) Bacillus pumilus SAFR-032 5621557 YP_001487517.1 CDS rpsT NC_009848.1 2304122 2304388 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 2304122..2304388 Bacillus pumilus SAFR-032 5621558 YP_001487518.1 CDS holA NC_009848.1 2304524 2305543 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(2304524..2305543) Bacillus pumilus SAFR-032 5621559 YP_001487519.1 CDS BPUM_2290 NC_009848.1 2305780 2305914 D hypothetical protein 2305780..2305914 Bacillus pumilus SAFR-032 5621560 YP_001487520.1 CDS comEC NC_009848.1 2305954 2308281 R possible integral membrane protein; competence protein EC complement(2305954..2308281) Bacillus pumilus SAFR-032 5621561 YP_001487521.1 CDS comEB NC_009848.1 2308274 2308843 R competence protein EB; dCMP deaminase complement(2308274..2308843) Bacillus pumilus SAFR-032 5621562 YP_001487522.1 CDS comEA NC_009848.1 2308909 2309538 R competence protein EA complement(2308909..2309538) Bacillus pumilus SAFR-032 5621563 YP_001487523.1 CDS comER NC_009848.1 2309629 2310477 D may be involved in regulation of competence genes; late competence protein ComER 2309629..2310477 Bacillus pumilus SAFR-032 5621564 YP_001487524.1 CDS yqeM NC_009848.1 2310525 2311268 R UbiE; SAM dependent methyltransferase complement(2310525..2311268) Bacillus pumilus SAFR-032 5621565 YP_001487525.1 CDS BPUM_2296 NC_009848.1 2311265 2311621 R hypothetical protein complement(2311265..2311621) Bacillus pumilus SAFR-032 5621566 YP_001487526.1 CDS yqeK NC_009848.1 2311634 2312197 R hypothetical protein complement(2311634..2312197) Bacillus pumilus SAFR-032 5621567 YP_001487527.1 CDS nadD NC_009848.1 2312187 2312756 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(2312187..2312756) Bacillus pumilus SAFR-032 5621568 YP_001487528.1 CDS yqeI NC_009848.1 2312770 2313060 R RNA binding protein complement(2312770..2313060) Bacillus pumilus SAFR-032 5621569 YP_001487529.1 CDS aroE NC_009848.1 2313054 2313896 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(2313054..2313896) Bacillus pumilus SAFR-032 5621570 YP_001487530.1 CDS yqeH NC_009848.1 2313918 2315018 R in Bacillus subtilis this enzyme appears to be involved in 30S ribosomal RNA subunit biogenesis; GTP-binding protein YqeH complement(2313918..2315018) Bacillus pumilus SAFR-032 5621571 YP_001487531.1 CDS yqeG NC_009848.1 2315021 2315371 R HAD family phosphatase complement(2315021..2315371) Bacillus pumilus SAFR-032 5621572 YP_001487532.1 CDS BPUM_2303 NC_009848.1 2315490 2315642 D hypothetical protein 2315490..2315642 Bacillus pumilus SAFR-032 5621573 YP_001487533.1 CDS sda NC_009848.1 2315905 2316045 D sporulation inhibitor Sda 2315905..2316045 Bacillus pumilus SAFR-032 5621574 YP_001487534.1 CDS BPUM_2305 NC_009848.1 2316181 2316330 R hypothetical protein complement(2316181..2316330) Bacillus pumilus SAFR-032 5621575 YP_001487535.1 CDS yqeF NC_009848.1 2316409 2317137 R lipoprotein complement(2316409..2317137) Bacillus pumilus SAFR-032 5621576 YP_001487536.1 CDS BPUM_2307 NC_009848.1 2317220 2317981 R polysaccharide deacetylase complement(2317220..2317981) Bacillus pumilus SAFR-032 5621577 YP_001487537.1 CDS rapA4 NC_009848.1 2318137 2319348 R aspartate phosphatase response regulator complement(2318137..2319348) Bacillus pumilus SAFR-032 5621578 YP_001487538.1 CDS spoIIIC NC_009848.1 2319349 2320218 D sigma-28; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this sigma factor is responsible for the expression of sporulation specific genes and is expressed in the mother cell after engulfment; sporulation sigma factor SigK 2319349..2320218 Bacillus pumilus SAFR-032 5621579 YP_001487539.1 CDS BPUM_2310 NC_009848.1 2320335 2321690 D transposase 2320335..2321690 Bacillus pumilus SAFR-032 5621580 YP_001487540.1 CDS BPUM_2312 NC_009848.1 2321873 2322388 R hypothetical protein complement(2321873..2322388) Bacillus pumilus SAFR-032 5621581 YP_001487541.1 CDS BPUM_2313 NC_009848.1 2322788 2322991 D hypothetical protein 2322788..2322991 Bacillus pumilus SAFR-032 5621582 YP_001487542.1 CDS BPUM_2314 NC_009848.1 2323091 2323750 D lipoprotein 2323091..2323750 Bacillus pumilus SAFR-032 5621583 YP_001487543.1 CDS BPUM_2316 NC_009848.1 2324275 2324526 R hypothetical protein complement(2324275..2324526) Bacillus pumilus SAFR-032 5621585 YP_001487544.1 CDS BPUM_2317 NC_009848.1 2324581 2324997 R hypothetical protein complement(2324581..2324997) Bacillus pumilus SAFR-032 5621586 YP_001487545.1 CDS BPUM_2319 NC_009848.1 2325786 2325977 R hypothetical protein complement(2325786..2325977) Bacillus pumilus SAFR-032 5621588 YP_001487546.1 CDS yjeA NC_009848.1 2326084 2327487 R polysaccharide deacetylase complement(2326084..2327487) Bacillus pumilus SAFR-032 5621589 YP_001487547.1 CDS BPUM_2321 NC_009848.1 2327656 2328210 R hypothetical protein complement(2327656..2328210) Bacillus pumilus SAFR-032 5621590 YP_001487548.1 CDS BPUM_2322 NC_009848.1 2328227 2328643 R GNAT family acetyltransferase complement(2328227..2328643) Bacillus pumilus SAFR-032 5621591 YP_001487549.1 CDS BPUM_2323 NC_009848.1 2328847 2329134 R hypothetical protein complement(2328847..2329134) Bacillus pumilus SAFR-032 5621592 YP_001487550.1 CDS BPUM_2324 NC_009848.1 2329281 2329565 D hypothetical protein 2329281..2329565 Bacillus pumilus SAFR-032 5621593 YP_001487551.1 CDS BPUM_2325 NC_009848.1 2329545 2329733 R hypothetical protein complement(2329545..2329733) Bacillus pumilus SAFR-032 5621594 YP_001487552.1 CDS BPUM_2326 NC_009848.1 2329807 2331147 R major facilitator superfamily transporter complement(2329807..2331147) Bacillus pumilus SAFR-032 5621595 YP_001487553.1 CDS araA NC_009848.1 2331229 2332650 R catalyzes the formation of L-ribulose from L-arabinose in L-arabinose catabolism; L-arabinose isomerase complement(2331229..2332650) Bacillus pumilus SAFR-032 5621596 YP_001487554.1 CDS araD NC_009848.1 2332668 2333372 R catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase complement(2332668..2333372) Bacillus pumilus SAFR-032 5621597 YP_001487555.1 CDS BPUM_2329 NC_009848.1 2333366 2334991 R xylulokinase complement(2333366..2334991) Bacillus pumilus SAFR-032 5621598 YP_001487556.1 CDS BPUM_2330 NC_009848.1 2335265 2336365 D transcriptional regulator 2335265..2336365 Bacillus pumilus SAFR-032 5621599 YP_001487557.1 CDS BPUM_2331 NC_009848.1 2336613 2337338 R protein disulfide-isomerase complement(2336613..2337338) Bacillus pumilus SAFR-032 5621600 YP_001487558.1 CDS hxlB NC_009848.1 2337480 2338037 R 3-hexulose-6-phosphate isomerase complement(2337480..2338037) Bacillus pumilus SAFR-032 5621601 YP_001487559.1 CDS hxlA NC_009848.1 2338034 2338666 R 3-hexulose-6-phosphate synthase complement(2338034..2338666) Bacillus pumilus SAFR-032 5621602 YP_001487560.1 CDS hxlR NC_009848.1 2338917 2339273 R transcriptional regulator complement(2338917..2339273) Bacillus pumilus SAFR-032 5621603 YP_001487561.1 CDS BPUM_2335 NC_009848.1 2339350 2340219 R possible lipase/esterase; peptidase complement(2339350..2340219) Bacillus pumilus SAFR-032 5621604 YP_001487562.1 CDS yxiJ NC_009848.1 2340466 2340813 R hypothetical protein complement(2340466..2340813) Bacillus pumilus SAFR-032 5621605 YP_001487563.1 CDS BPUM_2337 NC_009848.1 2340984 2341154 R hypothetical protein complement(2340984..2341154) Bacillus pumilus SAFR-032 5621606 YP_001487564.1 CDS BPUM_2338 NC_009848.1 2341348 2342001 R hypothetical protein complement(2341348..2342001) Bacillus pumilus SAFR-032 5621607 YP_001487565.1 CDS wapA NC_009848.1 2342031 2349053 R cell wall-associated protein complement(2342031..2349053) Bacillus pumilus SAFR-032 5621608 YP_001487566.1 CDS BPUM_2340 NC_009848.1 2349222 2350097 R penicillin binding protein transpeptidase; beta-lactamase complement(2349222..2350097) Bacillus pumilus SAFR-032 5621609 YP_001487567.1 CDS ydbM NC_009848.1 2350137 2351300 R acyl-CoA dehydrogenase complement(2350137..2351300) Bacillus pumilus SAFR-032 5621610 YP_001487568.1 CDS BPUM_2342 NC_009848.1 2351421 2352209 D amino acid ABC transporter ATP-binding protein 2351421..2352209 Bacillus pumilus SAFR-032 5621611 YP_001487569.1 CDS BPUM_2343 NC_009848.1 2352206 2353066 D amino acid ABC transporter ATP-binding protein 2352206..2353066 Bacillus pumilus SAFR-032 5621612 YP_001487570.1 CDS BPUM_2344 NC_009848.1 2353063 2353761 D amino acid ABC transporter ATP-binding protein 2353063..2353761 Bacillus pumilus SAFR-032 5621613 YP_001487571.1 CDS BPUM_2345 NC_009848.1 2353774 2354487 D amino acid ABC transporter ATP-binding protein 2353774..2354487 Bacillus pumilus SAFR-032 5621614 YP_001487572.1 CDS yjqC NC_009848.1 2354524 2355354 R sporulation related manganese (Mn) catalase complement(2354524..2355354) Bacillus pumilus SAFR-032 5621615 YP_001487573.1 CDS ydjL NC_009848.1 2355483 2356523 R zinc (Zn) alcohol dehydrogenase complement(2355483..2356523) Bacillus pumilus SAFR-032 5621616 YP_001487574.1 CDS BPUM_2348 NC_009848.1 2356595 2357815 R major facilitator superfamily transporter complement(2356595..2357815) Bacillus pumilus SAFR-032 5621617 YP_001487575.1 CDS BPUM_2349 NC_009848.1 2358188 2358937 R short chain dehydrogenase/reductase complement(2358188..2358937) Bacillus pumilus SAFR-032 5621618 YP_001487576.1 CDS dhaT NC_009848.1 2359067 2360230 R class IV alcohol dehydrogenase, iron-containing alcohol dehydrogenase, GbsB EutG; 1,3-propanediol dehydrogenase complement(2359067..2360230) Bacillus pumilus SAFR-032 5621619 YP_001487577.1 CDS BPUM_2351 NC_009848.1 2360227 2361678 R AGCS family alanine or glycine:sodium (Na+) or proton (H+) symporter complement(2360227..2361678) Bacillus pumilus SAFR-032 5621620 YP_001487578.1 CDS ywqM NC_009848.1 2361818 2362711 D LysR family transcriptional regulator 2361818..2362711 Bacillus pumilus SAFR-032 5621621 YP_001487579.1 CDS BPUM_2353 NC_009848.1 2363168 2364886 R multidrug ABC transporter ATP-binding protein complement(2363168..2364886) Bacillus pumilus SAFR-032 5621622 YP_001487580.1 CDS BPUM_2354 NC_009848.1 2364886 2365449 R YrkN; hypothetical protein complement(2364886..2365449) Bacillus pumilus SAFR-032 5621623 YP_001487581.1 CDS yycR NC_009848.1 2366166 2367380 R zinc (Zn) alcohol dehydrogenase complement(2366166..2367380) Bacillus pumilus SAFR-032 5621624 YP_001487582.1 CDS yrhH NC_009848.1 2367801 2368403 R methyltransferase complement(2367801..2368403) Bacillus pumilus SAFR-032 5621625 YP_001487583.1 CDS BPUM_2357 NC_009848.1 2368671 2368796 D hypothetical protein 2368671..2368796 Bacillus pumilus SAFR-032 5621626 YP_001487584.1 CDS yrzI NC_009848.1 2369162 2369296 R hypothetical protein complement(2369162..2369296) Bacillus pumilus SAFR-032 5621627 YP_001487585.1 CDS yrhC NC_009848.1 2369743 2369982 R hypothetical protein complement(2369743..2369982) Bacillus pumilus SAFR-032 5621628 YP_001487586.1 CDS yrhB NC_009848.1 2370046 2371194 R catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase complement(2370046..2371194) Bacillus pumilus SAFR-032 5621629 YP_001487587.1 CDS yrhA NC_009848.1 2371196 2372119 R cysteine synthase complement(2371196..2372119) Bacillus pumilus SAFR-032 5621630 YP_001487588.1 CDS mtnN NC_009848.1 2372166 2372861 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(2372166..2372861) Bacillus pumilus SAFR-032 5621631 YP_001487589.1 CDS yrrT NC_009848.1 2372877 2373518 R S-adenosylmethionine(SAM)-dependent methyltransferase complement(2372877..2373518) Bacillus pumilus SAFR-032 5621632 YP_001487590.1 CDS yrzA NC_009848.1 2373675 2373908 D hypothetical protein 2373675..2373908 Bacillus pumilus SAFR-032 5621633 YP_001487591.1 CDS yrrS NC_009848.1 2373944 2374609 R hypothetical protein complement(2373944..2374609) Bacillus pumilus SAFR-032 5621634 YP_001487592.1 CDS BPUM_2366 NC_009848.1 2374677 2376419 R penicillin-binding protein complement(2374677..2376419) Bacillus pumilus SAFR-032 5621635 YP_001487593.1 CDS greA NC_009848.1 2376470 2376943 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(2376470..2376943) Bacillus pumilus SAFR-032 5621636 YP_001487594.1 CDS BPUM_2368 NC_009848.1 2377652 2379007 D transposase 2377652..2379007 Bacillus pumilus SAFR-032 5621637 YP_001487595.1 CDS udk NC_009848.1 2379124 2379756 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(2379124..2379756) Bacillus pumilus SAFR-032 5621638 YP_001487596.1 CDS yrrO NC_009848.1 2379764 2381032 R U32 family peptidase complement(2379764..2381032) Bacillus pumilus SAFR-032 5621639 YP_001487597.1 CDS yrrN NC_009848.1 2381053 2381982 R U32 family peptidase complement(2381053..2381982) Bacillus pumilus SAFR-032 5621640 YP_001487598.1 CDS yrrM NC_009848.1 2381979 2382644 R O-methyltransferase complement(2381979..2382644) Bacillus pumilus SAFR-032 5621641 YP_001487599.1 CDS yrrL NC_009848.1 2382855 2383937 R aminodeoxychorismate lyase complement(2382855..2383937) Bacillus pumilus SAFR-032 5621642 YP_001487600.1 CDS yhfS NC_009848.1 2384011 2385099 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(2384011..2385099) Bacillus pumilus SAFR-032 5621643 YP_001487601.1 CDS yhfT NC_009848.1 2385087 2386550 R activates fatty acids by binding to coenzyme A; acyl-CoA synthetase complement(2385087..2386550) Bacillus pumilus SAFR-032 5621644 YP_001487602.1 CDS yhfU NC_009848.1 2386547 2387113 R BioY family protein; hypothetical protein complement(2386547..2387113) Bacillus pumilus SAFR-032 5621645 YP_001487603.1 CDS yrzB NC_009848.1 2387268 2387555 R hypothetical protein complement(2387268..2387555) Bacillus pumilus SAFR-032 5621646 YP_001487604.1 CDS yrrK NC_009848.1 2387572 2387988 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(2387572..2387988) Bacillus pumilus SAFR-032 5621647 YP_001487605.1 CDS yrzL NC_009848.1 2387992 2388270 R hypothetical protein complement(2387992..2388270) Bacillus pumilus SAFR-032 5621648 YP_001487606.1 CDS alaS NC_009848.1 2388349 2390985 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(2388349..2390985) Bacillus pumilus SAFR-032 5621649 YP_001487607.1 CDS yrrI NC_009848.1 2391322 2392386 R possible permease; hypothetical protein complement(2391322..2392386) Bacillus pumilus SAFR-032 5621650 YP_001487608.1 CDS glnQ1 NC_009848.1 2392552 2393280 D glutamine ABC transporter ATP-binding protein 2392552..2393280 Bacillus pumilus SAFR-032 5621651 YP_001487609.1 CDS glnH NC_009848.1 2393294 2394103 D glutamine ABC transporter binding protein 2393294..2394103 Bacillus pumilus SAFR-032 5621652 YP_001487610.1 CDS glnM NC_009848.1 2394171 2394824 D glutamine ABC transporter membrane protein 2394171..2394824 Bacillus pumilus SAFR-032 5621653 YP_001487611.1 CDS glnP NC_009848.1 2394840 2395490 D glutamine ABC transporter membrane protein 2394840..2395490 Bacillus pumilus SAFR-032 5621654 YP_001487612.1 CDS BPUM_2386 NC_009848.1 2395724 2395855 R hypothetical protein complement(2395724..2395855) Bacillus pumilus SAFR-032 5621655 YP_001487613.1 CDS BPUM_2387 NC_009848.1 2395876 2396067 R hypothetical protein complement(2395876..2396067) Bacillus pumilus SAFR-032 5621656 YP_001487614.1 CDS yrrD NC_009848.1 2396081 2396599 R hypothetical protein complement(2396081..2396599) Bacillus pumilus SAFR-032 5621657 YP_001487615.1 CDS recD NC_009848.1 2396675 2399059 R YrrC; exodeoxyribonuclease V subunit alpha complement(2396675..2399059) Bacillus pumilus SAFR-032 5621658 YP_001487616.1 CDS yrrB NC_009848.1 2399079 2399732 R hypothetical protein complement(2399079..2399732) Bacillus pumilus SAFR-032 5621659 YP_001487617.1 CDS mnmA NC_009848.1 2399793 2400911 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(2399793..2400911) Bacillus pumilus SAFR-032 5621660 YP_001487618.1 CDS yrvO NC_009848.1 2401007 2402149 R bifunctional protein cysteine desulfurase/selenocysteine lyase complement(2401007..2402149) Bacillus pumilus SAFR-032 5621661 YP_001487619.1 CDS yrzC NC_009848.1 2402168 2402587 R transcriptional regulator complement(2402168..2402587) Bacillus pumilus SAFR-032 5621662 YP_001487620.1 CDS yrvN NC_009848.1 2402797 2404062 D recombination factor protein RarA 2402797..2404062 Bacillus pumilus SAFR-032 5621663 YP_001487621.1 CDS yrvM NC_009848.1 2404292 2405056 R ThiF/MoeB/HesA family protein complement(2404292..2405056) Bacillus pumilus SAFR-032 5621664 YP_001487622.1 CDS aspS NC_009848.1 2405407 2407191 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(2405407..2407191) Bacillus pumilus SAFR-032 5621665 YP_004777017.1 CDS hisS NC_009848.1 2407361 2408500 R histidyl-tRNA synthetase complement(2407361..2408500) Bacillus pumilus SAFR-032 5621666 YP_001487623.1 CDS BPUM_2398 NC_009848.1 2408851 2409021 R hypothetical protein complement(2408851..2409021) Bacillus pumilus SAFR-032 5621667 YP_001487624.1 CDS blyA NC_009848.1 2409231 2410739 D YrvJ; N-acetylmuramoyl-L-alanine amidase 2409231..2410739 Bacillus pumilus SAFR-032 5621668 YP_001487625.1 CDS BPUM_2400 NC_009848.1 2410836 2411279 R D-tyrosyl-tRNA deacylase complement(2410836..2411279) Bacillus pumilus SAFR-032 5621669 YP_001487626.1 CDS relA NC_009848.1 2411298 2413508 R GTP diphosphokinase complement(2411298..2413508) Bacillus pumilus SAFR-032 5621670 YP_001487627.1 CDS apt NC_009848.1 2413651 2414163 R catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase complement(2413651..2414163) Bacillus pumilus SAFR-032 5621671 YP_001487628.1 CDS recJ NC_009848.1 2414187 2416511 R yrvE; recombination protein J complement(2414187..2416511) Bacillus pumilus SAFR-032 5621672 YP_001487629.1 CDS yrvD NC_009848.1 2416593 2416946 R hypothetical protein complement(2416593..2416946) Bacillus pumilus SAFR-032 5621673 YP_001487630.1 CDS secDF NC_009848.1 2417472 2419700 R part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF complement(2417472..2419700) Bacillus pumilus SAFR-032 5621675 YP_001487631.1 CDS yrzD NC_009848.1 2419742 2420038 R hypothetical protein complement(2419742..2420038) Bacillus pumilus SAFR-032 5621676 YP_001487632.1 CDS spoVB NC_009848.1 2420142 2421704 D stage V sporulation protein B 2420142..2421704 Bacillus pumilus SAFR-032 5621677 YP_001487633.1 CDS yrbG NC_009848.1 2421706 2422368 R hypothetical protein complement(2421706..2422368) Bacillus pumilus SAFR-032 5621678 YP_001487634.1 CDS yrzE NC_009848.1 2422534 2422911 D hypothetical protein 2422534..2422911 Bacillus pumilus SAFR-032 5621679 YP_001487635.1 CDS yajC NC_009848.1 2422963 2423229 R member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC complement(2422963..2423229) Bacillus pumilus SAFR-032 5621680 YP_001487636.1 CDS tgt NC_009848.1 2423277 2424422 R Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase complement(2423277..2424422) Bacillus pumilus SAFR-032 5621681 YP_001487637.1 CDS queA NC_009848.1 2424453 2425481 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(2424453..2425481) Bacillus pumilus SAFR-032 5621682 YP_001487638.1 CDS BPUM_2414 NC_009848.1 2425516 2425716 R hypothetical protein complement(2425516..2425716) Bacillus pumilus SAFR-032 5621683 YP_001487639.1 CDS ruvB NC_009848.1 2425709 2426713 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(2425709..2426713) Bacillus pumilus SAFR-032 5621684 YP_001487640.1 CDS ruvA NC_009848.1 2426725 2427330 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(2426725..2427330) Bacillus pumilus SAFR-032 5621685 YP_001487641.1 CDS bofC NC_009848.1 2427479 2427991 R forespore regulator of the sigma-K checkpoint; bypass-of-forespore protein C complement(2427479..2427991) Bacillus pumilus SAFR-032 5621686 YP_001487642.1 CDS yrzF NC_009848.1 2428217 2428861 D hypothetical protein 2428217..2428861 Bacillus pumilus SAFR-032 5621687 YP_001487643.1 CDS BPUM_2419 NC_009848.1 2429092 2429295 R hypothetical protein complement(2429092..2429295) Bacillus pumilus SAFR-032 5621688 YP_001487644.1 CDS BPUM_2420 NC_009848.1 2429472 2429618 D hypothetical protein 2429472..2429618 Bacillus pumilus SAFR-032 5621689 YP_001487645.1 CDS thiC NC_009848.1 2429642 2431399 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(2429642..2431399) Bacillus pumilus SAFR-032 5621690 YP_001487646.1 CDS BPUM_2422 NC_009848.1 2431874 2432506 D homoserine/threonine resistance transporter 2431874..2432506 Bacillus pumilus SAFR-032 5621691 YP_001487647.1 CDS coxA NC_009848.1 2432555 2433232 R spore cortex protein CoxA complement(2432555..2433232) Bacillus pumilus SAFR-032 5621692 YP_001487648.1 CDS safA NC_009848.1 2433306 2434550 R spore coat assembly protein YrbA; SpoVID-associated morphogenetic protein complement(2433306..2434550) Bacillus pumilus SAFR-032 5621693 YP_001487649.1 CDS nadA NC_009848.1 2434682 2435791 R 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase complement(2434682..2435791) Bacillus pumilus SAFR-032 5621694 YP_001487650.1 CDS nadC NC_009848.1 2435778 2436641 R catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase complement(2435778..2436641) Bacillus pumilus SAFR-032 5621695 YP_001487651.1 CDS nadB NC_009848.1 2436623 2438197 R catalyzes the formation of oxaloacetate from L-aspartate; L-aspartate oxidase complement(2436623..2438197) Bacillus pumilus SAFR-032 5621696 YP_001487652.1 CDS yrxA NC_009848.1 2439434 2439976 D hypothetical protein 2439434..2439976 Bacillus pumilus SAFR-032 5621698 YP_001487653.1 CDS pheA NC_009848.1 2440203 2441081 R catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; prephenate dehydratase complement(2440203..2441081) Bacillus pumilus SAFR-032 5621699 YP_001487654.1 CDS pheB NC_009848.1 2441100 2441543 R hypothetical protein complement(2441100..2441543) Bacillus pumilus SAFR-032 5621700 YP_001487655.1 CDS obgE NC_009848.1 2441599 2442885 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(2441599..2442885) Bacillus pumilus SAFR-032 5621701 YP_001487656.1 CDS spo0B NC_009848.1 2442916 2443500 R stage 0 sporulation initiation phosphotransferase B complement(2442916..2443500) Bacillus pumilus SAFR-032 5621702 YP_001487657.1 CDS rpmA NC_009848.1 2443756 2444040 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(2443756..2444040) Bacillus pumilus SAFR-032 5621703 YP_001487658.1 CDS ysxB NC_009848.1 2444053 2444334 R hypothetical protein complement(2444053..2444334) Bacillus pumilus SAFR-032 5621704 YP_001487659.1 CDS rplU NC_009848.1 2444406 2444714 R 50S ribosomal protein L21 complement(2444406..2444714) Bacillus pumilus SAFR-032 5621705 YP_001487660.1 CDS spoIVFB NC_009848.1 2444866 2445735 R stage IV sporulation M50 family membrane metalloprotease FB complement(2444866..2445735) Bacillus pumilus SAFR-032 5621706 YP_001487661.1 CDS spoIVFA NC_009848.1 2445728 2446519 R inhibitor of stage IV sporulation protein FB; stage IV sporulation protein FA complement(2445728..2446519) Bacillus pumilus SAFR-032 5621707 YP_001487662.1 CDS minD NC_009848.1 2446632 2447435 R ATPase activator of MinC; septum site determining protein complement(2446632..2447435) Bacillus pumilus SAFR-032 5621708 YP_001487663.1 CDS minC NC_009848.1 2447438 2448121 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(2447438..2448121) Bacillus pumilus SAFR-032 5621709 YP_001487664.1 CDS mreD NC_009848.1 2448176 2448694 R cell-shape determining protein complement(2448176..2448694) Bacillus pumilus SAFR-032 5621710 YP_001487665.1 CDS mreC NC_009848.1 2448691 2449590 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(2448691..2449590) Bacillus pumilus SAFR-032 5621711 YP_001487666.1 CDS mreB NC_009848.1 2449618 2450637 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(2449618..2450637) Bacillus pumilus SAFR-032 5621712 YP_001487667.1 CDS radC NC_009848.1 2450728 2451426 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(2450728..2451426) Bacillus pumilus SAFR-032 5621713 YP_001487668.1 CDS maf NC_009848.1 2451451 2452020 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(2451451..2452020) Bacillus pumilus SAFR-032 5621714 YP_001487669.1 CDS spoIIB NC_009848.1 2452198 2453211 R stage II sporulation protein B complement(2452198..2453211) Bacillus pumilus SAFR-032 5621715 YP_001487670.1 CDS BPUM_2447 NC_009848.1 2453386 2454105 R ComC protein; A24 unassigned peptidase family protein complement(2453386..2454105) Bacillus pumilus SAFR-032 5621716 YP_001487671.1 CDS folC NC_009848.1 2454253 2455557 R tetrahydrofolate synthase complement(2454253..2455557) Bacillus pumilus SAFR-032 5621717 YP_001487672.1 CDS valS NC_009848.1 2455623 2458265 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(2455623..2458265) Bacillus pumilus SAFR-032 5621718 YP_001487673.1 CDS BPUM_2450 NC_009848.1 2458723 2458911 D hypothetical protein 2458723..2458911 Bacillus pumilus SAFR-032 5621719 YP_001487674.1 CDS ysxE NC_009848.1 2458958 2459989 R hypothetical protein complement(2458958..2459989) Bacillus pumilus SAFR-032 5621720 YP_001487675.1 CDS spoVID NC_009848.1 2460027 2461304 R stage VI sporulation protein D; spore coat assembly protein SpoVID complement(2460027..2461304) Bacillus pumilus SAFR-032 5621721 YP_001487676.1 CDS hemL NC_009848.1 2461627 2462919 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(2461627..2462919) Bacillus pumilus SAFR-032 5621722 YP_001487677.1 CDS hemB NC_009848.1 2462947 2463918 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(2462947..2463918) Bacillus pumilus SAFR-032 5621723 YP_001487678.1 CDS hemD NC_009848.1 2463915 2464706 R uroporphyrinogen III synthase complement(2463915..2464706) Bacillus pumilus SAFR-032 5621724 YP_001487679.1 CDS hemC NC_009848.1 2464703 2465638 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(2464703..2465638) Bacillus pumilus SAFR-032 5621725 YP_001487680.1 CDS hemX NC_009848.1 2465680 2466510 R cytochrome C biogenesis protein complement(2465680..2466510) Bacillus pumilus SAFR-032 5621726 YP_001487681.1 CDS hemA NC_009848.1 2466518 2467885 R catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase complement(2466518..2467885) Bacillus pumilus SAFR-032 5621727 YP_001487682.1 CDS ysxD NC_009848.1 2468128 2468613 D hypothetical protein 2468128..2468613 Bacillus pumilus SAFR-032 5621728 YP_001487683.1 CDS engB NC_009848.1 2468657 2469244 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(2468657..2469244) Bacillus pumilus SAFR-032 5621729 YP_001487684.1 CDS lonA NC_009848.1 2469241 2471565 R class III heat-shock ATP-dependent Lon protease complement(2469241..2471565) Bacillus pumilus SAFR-032 5621730 YP_001487685.1 CDS lonB NC_009848.1 2471737 2473398 R ATP-dependent protease complement(2471737..2473398) Bacillus pumilus SAFR-032 5621731 YP_001487686.1 CDS clpX NC_009848.1 2473535 2474800 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(2473535..2474800) Bacillus pumilus SAFR-032 5621732 YP_001487687.1 CDS tig NC_009848.1 2475052 2476326 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(2475052..2476326) Bacillus pumilus SAFR-032 5621733 YP_001487688.1 CDS ysoA NC_009848.1 2476566 2477573 R hypothetical protein complement(2476566..2477573) Bacillus pumilus SAFR-032 5621734 YP_001487689.1 CDS leuD NC_009848.1 2477699 2478298 R catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit complement(2477699..2478298) Bacillus pumilus SAFR-032 5621735 YP_001487690.1 CDS leuC NC_009848.1 2478312 2479727 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(2478312..2479727) Bacillus pumilus SAFR-032 5621736 YP_001487691.1 CDS leuB NC_009848.1 2479768 2480865 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(2479768..2480865) Bacillus pumilus SAFR-032 5621737 YP_001487692.1 CDS leuA NC_009848.1 2480884 2482437 R catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase complement(2480884..2482437) Bacillus pumilus SAFR-032 5621738 YP_001487693.1 CDS ilvC NC_009848.1 2482424 2483452 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(2482424..2483452) Bacillus pumilus SAFR-032 5621739 YP_001487694.1 CDS ilvH NC_009848.1 2483471 2483989 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(2483471..2483989) Bacillus pumilus SAFR-032 5621740 YP_001487695.1 CDS ilvB NC_009848.1 2483986 2485710 R catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase catalytic subunit complement(2483986..2485710) Bacillus pumilus SAFR-032 5621741 YP_001487696.1 CDS BPUM_2473 NC_009848.1 2486088 2487002 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(2486088..2487002) Bacillus pumilus SAFR-032 5621742 YP_001487697.1 CDS BPUM_2474 NC_009848.1 2487437 2488480 D 6-phosphogluconolactonase 2487437..2488480 Bacillus pumilus SAFR-032 5621743 YP_001487698.1 CDS BPUM_2475 NC_009848.1 2488711 2489130 R hypothetical protein complement(2488711..2489130) Bacillus pumilus SAFR-032 5621744 YP_001487699.1 CDS dltD NC_009848.1 2489226 2490392 R D-alanine esterification of lipoteichoic acid and wall teichoic protein; D-alanine esterase DltD complement(2489226..2490392) Bacillus pumilus SAFR-032 5621745 YP_001487700.1 CDS dltC NC_009848.1 2490392 2490628 R D-alanyl carrier protein subunit; involved in the incorporation of D-alanine into membrane-associated D-alanyl-lipoteichoic acid; D-alanyl carrier protein is the acceptor of activated D-alanine which it donates to a membrane acceptor(D-alanyl transferase) for incorporation into membrane lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 2 complement(2490392..2490628) Bacillus pumilus SAFR-032 5621746 YP_001487701.1 CDS dltB NC_009848.1 2490650 2491834 R D-alanine esterification of lipoteichoic acid and wall teichoic protein; D-alanine esterase DltB complement(2490650..2491834) Bacillus pumilus SAFR-032 5621747 YP_001487702.1 CDS dltA NC_009848.1 2491831 2493336 R transfers D-alanine to the D-alanyl carrier protein during the incorporation of D-alanine into lipoteichoic acid; D-alanine--poly(phosphoribitol) ligase subunit 1 complement(2491831..2493336) Bacillus pumilus SAFR-032 5621748 YP_001487703.1 CDS BPUM_2480 NC_009848.1 2493351 2493494 R D-Ala-teichoic acid biosynthesis protein complement(2493351..2493494) Bacillus pumilus SAFR-032 5621749 YP_001487704.1 CDS BPUM_2481 NC_009848.1 2493834 2494229 D glyoxalase 2493834..2494229 Bacillus pumilus SAFR-032 5621750 YP_001487705.1 CDS BPUM_2482 NC_009848.1 2494460 2494639 R hypothetical protein complement(2494460..2494639) Bacillus pumilus SAFR-032 5621751 YP_001487706.1 CDS BPUM_2483 NC_009848.1 2494814 2495002 D hypothetical protein 2494814..2495002 Bacillus pumilus SAFR-032 5621752 YP_001487707.1 CDS BPUM_2484 NC_009848.1 2495174 2496715 D transposase 2495174..2496715 Bacillus pumilus SAFR-032 5621753 YP_001487708.1 CDS BPUM_2485 NC_009848.1 2496741 2497076 D hypothetical protein 2496741..2497076 Bacillus pumilus SAFR-032 5621754 YP_001487709.1 CDS BPUM_2487 NC_009848.1 2497413 2497610 D hypothetical protein 2497413..2497610 Bacillus pumilus SAFR-032 5621756 YP_001487710.1 CDS BPUM_2488 NC_009848.1 2497974 2498954 D short-chain alcohol dehydrogenase; dehydrogenase 2497974..2498954 Bacillus pumilus SAFR-032 5621757 YP_001487711.1 CDS ysnB NC_009848.1 2499582 2500106 R phosphoesterase complement(2499582..2500106) Bacillus pumilus SAFR-032 5621759 YP_001487712.1 CDS ysnA NC_009848.1 2500121 2500714 R hydrolyzes non-standard nucleotides such as xanthine and inosine; nucleoside-triphosphatase complement(2500121..2500714) Bacillus pumilus SAFR-032 5621760 YP_001487713.1 CDS rph NC_009848.1 2500734 2501462 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(2500734..2501462) Bacillus pumilus SAFR-032 5621761 YP_001487714.1 CDS gerM NC_009848.1 2501614 2502675 R spore germination protein M complement(2501614..2502675) Bacillus pumilus SAFR-032 5621762 YP_001487715.1 CDS racE NC_009848.1 2502777 2503595 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(2502777..2503595) Bacillus pumilus SAFR-032 5621763 YP_001487716.1 CDS ysmB NC_009848.1 2503603 2504043 R MarR family transcriptional regulator complement(2503603..2504043) Bacillus pumilus SAFR-032 5621764 YP_001487717.1 CDS gerE NC_009848.1 2504192 2504416 R transcriptional regulator of spore coat genes; spore germination protein E complement(2504192..2504416) Bacillus pumilus SAFR-032 5621765 YP_001487718.1 CDS BPUM_2496 NC_009848.1 2504622 2505938 R YraO; CitMHS family citrate-magnesium (Mg2+):proton (H+) citrate-calcium (Ca2+): proton (H+) symporter complement(2504622..2505938) Bacillus pumilus SAFR-032 5621766 YP_001487719.1 CDS yraN NC_009848.1 2506091 2506951 R LysR family transcriptional regulator complement(2506091..2506951) Bacillus pumilus SAFR-032 5621767 YP_001487720.1 CDS yraM NC_009848.1 2507087 2508217 D DUF485/possible polyaromatic hydrocarbon fluorene degradation protein; hypothetical protein 2507087..2508217 Bacillus pumilus SAFR-032 5621768 YP_001487721.1 CDS BPUM_2499 NC_009848.1 2508245 2508964 R biotin-(acetyl-CoA carboxylase) ligase complement(2508245..2508964) Bacillus pumilus SAFR-032 5621769 YP_001487722.1 CDS ysmA NC_009848.1 2509043 2509504 R possible 4-hydroxybenzoyl-CoA thioesterase; thioesterase complement(2509043..2509504) Bacillus pumilus SAFR-032 5621770 YP_001487723.1 CDS sdhB NC_009848.1 2509625 2510389 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(2509625..2510389) Bacillus pumilus SAFR-032 5621771 YP_001487724.1 CDS sdhA NC_009848.1 2510391 2512151 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(2510391..2512151) Bacillus pumilus SAFR-032 5621772 YP_001487725.1 CDS sdhC NC_009848.1 2512189 2512797 R succinate dehydrogenase cytochrome b558 subunit complement(2512189..2512797) Bacillus pumilus SAFR-032 5621773 YP_001487726.1 CDS yslB NC_009848.1 2513078 2513521 D hypothetical protein 2513078..2513521 Bacillus pumilus SAFR-032 5621774 YP_001487727.1 CDS lysC NC_009848.1 2513689 2514918 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(2513689..2514918) Bacillus pumilus SAFR-032 5621775 YP_001487728.1 CDS uvrC NC_009848.1 2515300 2517072 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(2515300..2517072) Bacillus pumilus SAFR-032 5621776 YP_001487729.1 CDS trxA NC_009848.1 2517212 2517526 R thioredoxin complement(2517212..2517526) Bacillus pumilus SAFR-032 5621777 YP_001487730.1 CDS abfA NC_009848.1 2517772 2519250 R alpha-N-arabinofuranosidase complement(2517772..2519250) Bacillus pumilus SAFR-032 5621778 YP_001487731.1 CDS etfA NC_009848.1 2519326 2520303 R electron transfer flavoprotein subunit alpha complement(2519326..2520303) Bacillus pumilus SAFR-032 5621779 YP_001487732.1 CDS etfB NC_009848.1 2520348 2521121 R electron transfer flavoprotein subunit beta complement(2520348..2521121) Bacillus pumilus SAFR-032 5621780 YP_001487733.1 CDS ysiB NC_009848.1 2521152 2521931 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(2521152..2521931) Bacillus pumilus SAFR-032 5621781 YP_001487734.1 CDS ysiA NC_009848.1 2521958 2522542 R transcriptional regulator complement(2521958..2522542) Bacillus pumilus SAFR-032 5621782 YP_001487735.1 CDS lcfA2 NC_009848.1 2522708 2524429 R long-chain-fatty-acid--CoA ligase complement(2522708..2524429) Bacillus pumilus SAFR-032 5621783 YP_001487736.1 CDS BPUM_2514 NC_009848.1 2524531 2524986 R hypothetical protein complement(2524531..2524986) Bacillus pumilus SAFR-032 5621784 YP_001487737.1 CDS yshE NC_009848.1 2525150 2525554 R hypothetical protein complement(2525150..2525554) Bacillus pumilus SAFR-032 5621785 YP_001487738.1 CDS mutS2 NC_009848.1 2525569 2527929 R MutS2; MutS-II; involved in blocking homologous and homeologous recombination; has ATPase activity stimulated by recombination intermediates; inhibits DNA strand exchange; recombination and DNA strand exchange inhibitor protein complement(2525569..2527929) Bacillus pumilus SAFR-032 5621786 YP_001487739.1 CDS yshC NC_009848.1 2527948 2529660 R hypothetical protein complement(2527948..2529660) Bacillus pumilus SAFR-032 5621787 YP_001487740.1 CDS yshB NC_009848.1 2529775 2530308 R possible Colicin V production protein; hypothetical protein complement(2529775..2530308) Bacillus pumilus SAFR-032 5621788 YP_001487741.1 CDS yshA NC_009848.1 2530316 2530573 R cell division protein ZapA complement(2530316..2530573) Bacillus pumilus SAFR-032 5621789 YP_001487742.1 CDS rnhC NC_009848.1 2530708 2531631 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease HIII 2530708..2531631 Bacillus pumilus SAFR-032 5621790 YP_001487743.1 CDS pheT NC_009848.1 2531670 2534084 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(2531670..2534084) Bacillus pumilus SAFR-032 5621791 YP_001487744.1 CDS pheS NC_009848.1 2534100 2535134 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(2534100..2535134) Bacillus pumilus SAFR-032 5621792 YP_001487745.1 CDS ysgA NC_009848.1 2535511 2536254 R SpoU rRNA methylase family complement(2535511..2536254) Bacillus pumilus SAFR-032 5621793 YP_001487746.1 CDS sspI NC_009848.1 2536368 2536589 D small acid-soluble spore protein SspI 2536368..2536589 Bacillus pumilus SAFR-032 5621794 YP_001487747.1 CDS cstA NC_009848.1 2536631 2538427 R carbon starvation-induced protein complement(2536631..2538427) Bacillus pumilus SAFR-032 5621795 YP_001487748.1 CDS BPUM_2526 NC_009848.1 2538457 2538612 R hypothetical protein complement(2538457..2538612) Bacillus pumilus SAFR-032 5621796 YP_001487749.1 CDS ysdC NC_009848.1 2538779 2539867 R M42 family glutamyl aminopeptidase complement(2538779..2539867) Bacillus pumilus SAFR-032 5621797 YP_001487750.1 CDS ysdB NC_009848.1 2540047 2540451 D hypothetical protein 2540047..2540451 Bacillus pumilus SAFR-032 5621798 YP_001487751.1 CDS ysdA NC_009848.1 2540469 2540732 R hypothetical protein complement(2540469..2540732) Bacillus pumilus SAFR-032 5621799 YP_001487752.1 CDS rplT NC_009848.1 2540796 2541155 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(2540796..2541155) Bacillus pumilus SAFR-032 5621800 YP_001487753.1 CDS rpmI NC_009848.1 2541187 2541387 R 50S ribosomal protein L35 complement(2541187..2541387) Bacillus pumilus SAFR-032 5621801 YP_001487754.1 CDS ysbB NC_009848.1 2542260 2542955 R in conjunction with LrgA this protein inhibits the expression or activity of extracellular murein hydrolases; antiholin-like protein LrgB complement(2542260..2542955) Bacillus pumilus SAFR-032 5621803 YP_001487755.1 CDS ysbA NC_009848.1 2542970 2543413 R negatively regulates murein hydrolase activity; murein hydrolase regulator LrgA complement(2542970..2543413) Bacillus pumilus SAFR-032 5621804 YP_001487756.1 CDS lytT NC_009848.1 2543550 2544287 R response regulator complement(2543550..2544287) Bacillus pumilus SAFR-032 5621805 YP_001487757.1 CDS lytS NC_009848.1 2544284 2546041 R sensor histidine kinase complement(2544284..2546041) Bacillus pumilus SAFR-032 5621806 YP_001487758.1 CDS ysaA NC_009848.1 2546217 2546996 D HAD family phosphatase 2546217..2546996 Bacillus pumilus SAFR-032 5621807 YP_001487759.1 CDS BPUM_2538 NC_009848.1 2547055 2547984 R methyl-accepting chemotaxis protein complement(2547055..2547984) Bacillus pumilus SAFR-032 5621808 YP_001487760.1 CDS thrS NC_009848.1 2548144 2550084 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(2548144..2550084) Bacillus pumilus SAFR-032 5621809 YP_001487761.1 CDS ytxC NC_009848.1 2550421 2551290 R hypothetical protein complement(2550421..2551290) Bacillus pumilus SAFR-032 5621810 YP_001487762.1 CDS ytxB NC_009848.1 2551351 2551989 R hypothetical protein complement(2551351..2551989) Bacillus pumilus SAFR-032 5621811 YP_001487763.1 CDS dnaI NC_009848.1 2552023 2552952 R Primosomal protein that may act to load helicase DnaC during DNA replication; primosomal protein DnaI complement(2552023..2552952) Bacillus pumilus SAFR-032 5621812 YP_001487764.1 CDS dnaB NC_009848.1 2552970 2554394 R replication initiation and membrane attachment protein; replicative DNA helicase complement(2552970..2554394) Bacillus pumilus SAFR-032 5621813 YP_001487765.1 CDS BPUM_2545 NC_009848.1 2554959 2555345 R hypothetical protein complement(2554959..2555345) Bacillus pumilus SAFR-032 5621815 YP_001487766.1 CDS speD NC_009848.1 2555532 2555915 R Decarboxylation of S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase complement(2555532..2555915) Bacillus pumilus SAFR-032 5621816 YP_001487767.1 CDS gapB NC_009848.1 2556147 2557169 R NADP-dependent; catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; active during gluconeogenesis; glyceraldehyde-3-phosphate dehydrogenase complement(2556147..2557169) Bacillus pumilus SAFR-032 5621817 YP_001487768.1 CDS coaE NC_009848.1 2557342 2557947 R catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase complement(2557342..2557947) Bacillus pumilus SAFR-032 5621818 YP_001487769.1 CDS ytaF NC_009848.1 2557962 2558594 R hypothetical protein complement(2557962..2558594) Bacillus pumilus SAFR-032 5621819 YP_001487770.1 CDS mutM NC_009848.1 2558771 2559601 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(2558771..2559601) Bacillus pumilus SAFR-032 5621820 YP_001487771.1 CDS polA NC_009848.1 2559630 2562269 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(2559630..2562269) Bacillus pumilus SAFR-032 5621821 YP_001487772.1 CDS phoR NC_009848.1 2562523 2564265 R sensor histidine kinase PhoR complement(2562523..2564265) Bacillus pumilus SAFR-032 5621822 YP_001487773.1 CDS phoP NC_009848.1 2564258 2564986 R response regulator PhoP complement(2564258..2564986) Bacillus pumilus SAFR-032 5621823 YP_001487774.1 CDS mdh NC_009848.1 2565174 2566112 R Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase complement(2565174..2566112) Bacillus pumilus SAFR-032 5621824 YP_001487775.1 CDS icd NC_009848.1 2566147 2567418 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(2566147..2567418) Bacillus pumilus SAFR-032 5621825 YP_001487776.1 CDS citZ NC_009848.1 2567566 2568684 R catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase complement(2567566..2568684) Bacillus pumilus SAFR-032 5621826 YP_001487777.1 CDS BPUM_2557 NC_009848.1 2568838 2569071 D hypothetical protein 2568838..2569071 Bacillus pumilus SAFR-032 5621827 YP_001487778.1 CDS ytwI NC_009848.1 2569061 2569525 R hypothetical protein complement(2569061..2569525) Bacillus pumilus SAFR-032 5621828 YP_001487779.1 CDS ytvI NC_009848.1 2569626 2570744 D sporulation integral membrane protein YtvI 2569626..2570744 Bacillus pumilus SAFR-032 5621829 YP_001487780.1 CDS fxsA NC_009848.1 2570770 2571159 R F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA protein complement(2570770..2571159) Bacillus pumilus SAFR-032 5621830 YP_001487781.1 CDS pyk NC_009848.1 2571262 2573022 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(2571262..2573022) Bacillus pumilus SAFR-032 5621831 YP_001487782.1 CDS pfkA NC_009848.1 2573050 2574009 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(2573050..2574009) Bacillus pumilus SAFR-032 5621832 YP_001487783.1 CDS accA2 NC_009848.1 2574351 2575328 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(2574351..2575328) Bacillus pumilus SAFR-032 5621833 YP_001487784.1 CDS accD NC_009848.1 2575313 2576188 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta complement(2575313..2576188) Bacillus pumilus SAFR-032 5621834 YP_001487785.1 CDS BPUM_2565 NC_009848.1 2576493 2577725 R malate dehydrogenase complement(2576493..2577725) Bacillus pumilus SAFR-032 5621835 YP_001487786.1 CDS dnaE NC_009848.1 2577867 2581202 R catalyzes DNA-template-directed extension of the 3'-end of a DNA strand by one nucleotide at a time. Proposed to be responsible for the synthesis of the lagging strand. In the low GC gram positive bacteria this enzyme is less processive and more error prone than its counterpart in other bacteria.; DNA polymerase III DnaE complement(2577867..2581202) Bacillus pumilus SAFR-032 5621836 YP_001487787.1 CDS ytrH NC_009848.1 2581340 2581681 D sporulation protein YtrH 2581340..2581681 Bacillus pumilus SAFR-032 5621837 YP_001487788.1 CDS ytrI NC_009848.1 2581678 2582181 D sporulation protein YtrI 2581678..2582181 Bacillus pumilus SAFR-032 5621838 YP_001487789.1 CDS BPUM_2569 NC_009848.1 2582291 2582476 D hypothetical protein 2582291..2582476 Bacillus pumilus SAFR-032 5621839 YP_001487790.1 CDS ytqI NC_009848.1 2582527 2583468 R hypothetical protein complement(2582527..2583468) Bacillus pumilus SAFR-032 5621840 YP_001487791.1 CDS ytpI NC_009848.1 2583616 2583918 D hypothetical protein 2583616..2583918 Bacillus pumilus SAFR-032 5621841 YP_001487792.1 CDS ytoI NC_009848.1 2583986 2585308 R hypothetical protein complement(2583986..2585308) Bacillus pumilus SAFR-032 5621842 YP_001487793.1 CDS ytkL NC_009848.1 2585455 2586138 R catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins; metal-dependent hydrolase complement(2585455..2586138) Bacillus pumilus SAFR-032 5621843 YP_001487794.1 CDS fabG NC_009848.1 2586205 2586960 R catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(2586205..2586960) Bacillus pumilus SAFR-032 5621844 YP_001487795.1 CDS BPUM_2575 NC_009848.1 2587067 2587969 R hypothetical protein complement(2587067..2587969) Bacillus pumilus SAFR-032 5621845 YP_001487796.1 CDS argH NC_009848.1 2588090 2589463 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(2588090..2589463) Bacillus pumilus SAFR-032 5621846 YP_001487797.1 CDS argG NC_009848.1 2589460 2590671 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(2589460..2590671) Bacillus pumilus SAFR-032 5621847 YP_001487798.1 CDS ackA NC_009848.1 2591466 2592650 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(2591466..2592650) Bacillus pumilus SAFR-032 5621849 YP_001487799.1 CDS ytxK NC_009848.1 2592880 2593854 R adenine specific DNA methyltransferase complement(2592880..2593854) Bacillus pumilus SAFR-032 5621850 YP_001487800.1 CDS tpx NC_009848.1 2593944 2594444 R antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase complement(2593944..2594444) Bacillus pumilus SAFR-032 5621851 YP_001487801.1 CDS ytfJ NC_009848.1 2594557 2595009 R sporulation protein YtfJ complement(2594557..2595009) Bacillus pumilus SAFR-032 5621852 YP_001487802.1 CDS ytfI NC_009848.1 2595024 2595731 R hypothetical protein complement(2595024..2595731) Bacillus pumilus SAFR-032 5621853 YP_001487803.1 CDS yteJ NC_009848.1 2595830 2596351 R hypothetical protein complement(2595830..2596351) Bacillus pumilus SAFR-032 5621854 YP_001487804.1 CDS sppA NC_009848.1 2596366 2597367 R periplasmic serine protease; peptidase complement(2596366..2597367) Bacillus pumilus SAFR-032 5621855 YP_001487805.1 CDS ppnK NC_009848.1 2597813 2598616 D catalyzes the phosphorylation of NAD to NADP; inorganic polyphosphate/ATP-NAD kinase 2597813..2598616 Bacillus pumilus SAFR-032 5621856 YP_001487806.1 CDS BPUM_2587 NC_009848.1 2598868 2600310 D DEAD/DEAH box helicase 2598868..2600310 Bacillus pumilus SAFR-032 5621857 YP_001487807.1 CDS des NC_009848.1 2600498 2601553 D fatty acid desaturase 2600498..2601553 Bacillus pumilus SAFR-032 5621858 YP_001487808.1 CDS desK NC_009848.1 2601670 2602806 D YocF; sensor histidine kinase 2601670..2602806 Bacillus pumilus SAFR-032 5621859 YP_001487809.1 CDS desR NC_009848.1 2602803 2603402 D response regulator 2602803..2603402 Bacillus pumilus SAFR-032 5621860 YP_001487810.1 CDS BPUM_2591 NC_009848.1 2603603 2604523 D YxeB; iron ABC transporter binding protein 2603603..2604523 Bacillus pumilus SAFR-032 5621861 YP_001487811.1 CDS ytsA NC_009848.1 2604547 2605323 D response regulator 2604547..2605323 Bacillus pumilus SAFR-032 5621862 YP_001487812.1 CDS ytsB NC_009848.1 2605323 2606327 D sensor histidine kinase 2605323..2606327 Bacillus pumilus SAFR-032 5621863 YP_001487813.1 CDS ytsC NC_009848.1 2606433 2607194 D BceA; ABC transporter ATP-binding protein 2606433..2607194 Bacillus pumilus SAFR-032 5621864 YP_001487814.1 CDS ytsD NC_009848.1 2607184 2609121 D BceB; ABC transporter ATP-binding protein 2607184..2609121 Bacillus pumilus SAFR-032 5621865 YP_001487815.1 CDS BPUM_2596 NC_009848.1 2609161 2610513 R hypothetical protein complement(2609161..2610513) Bacillus pumilus SAFR-032 5621866 YP_001487816.1 CDS BPUM_2597 NC_009848.1 2610616 2611203 R NAD(P)H dehydrogenase (quinone) complement(2610616..2611203) Bacillus pumilus SAFR-032 5621867 YP_001487817.1 CDS BPUM_2598 NC_009848.1 2611321 2611767 D transcriptional regulator 2611321..2611767 Bacillus pumilus SAFR-032 5621868 YP_001487818.1 CDS yisU NC_009848.1 2611839 2612453 R LysE family L-lysine exporter complement(2611839..2612453) Bacillus pumilus SAFR-032 5621869 YP_001487819.1 CDS ytcI NC_009848.1 2612584 2614164 R bifunctional AMP-dependent acyl-coenzyme A synthetase/ligase complement(2612584..2614164) Bacillus pumilus SAFR-032 5621870 YP_001487820.1 CDS sspA NC_009848.1 2614390 2614602 R small acid-soluble spore protein A complement(2614390..2614602) Bacillus pumilus SAFR-032 5621871 YP_001487821.1 CDS thiI NC_009848.1 2614692 2615897 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(2614692..2615897) Bacillus pumilus SAFR-032 5621872 YP_001487822.1 CDS braB1 NC_009848.1 2617247 2618590 D LIVCS family branched chain amino acid:cation symporter 2617247..2618590 Bacillus pumilus SAFR-032 5621874 YP_001487823.1 CDS braB2 NC_009848.1 2618805 2620148 D LIVCS family branched chain amino acid:cation symporter 2618805..2620148 Bacillus pumilus SAFR-032 5621875 YP_001487824.1 CDS ezrA NC_009848.1 2620189 2621892 R acts to negatively regulates ftsZ ring formation by modulating the frequency and position of the ftsZ ring formation; septation ring formation regulator EzrA complement(2620189..2621892) Bacillus pumilus SAFR-032 5621876 YP_001487825.1 CDS hisK NC_009848.1 2622233 2623048 D catalyzes the formation of L-histidinol from L-histidinol phosphate; histidinol-phosphatase 2622233..2623048 Bacillus pumilus SAFR-032 5621877 YP_001487826.1 CDS yttP NC_009848.1 2623018 2623683 R transcriptional regulator complement(2623018..2623683) Bacillus pumilus SAFR-032 5621878 YP_001487827.1 CDS ytsP NC_009848.1 2623810 2624307 D hypothetical protein 2623810..2624307 Bacillus pumilus SAFR-032 5621879 YP_001487828.1 CDS rpsD NC_009848.1 2624606 2625208 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 2624606..2625208 Bacillus pumilus SAFR-032 5621880 YP_001487829.1 CDS BPUM_2611 NC_009848.1 2625361 2625969 D hypothetical protein 2625361..2625969 Bacillus pumilus SAFR-032 5621881 YP_001487830.1 CDS yrdC NC_009848.1 2626012 2626575 R amidohydrolase complement(2626012..2626575) Bacillus pumilus SAFR-032 5621882 YP_001487831.1 CDS lip NC_009848.1 2626791 2627438 R triacylglycerol lipase complement(2626791..2627438) Bacillus pumilus SAFR-032 5621883 YP_001487832.1 CDS BPUM_2614 NC_009848.1 2627640 2627942 D antibiotic biosynthesis monooxygenase 2627640..2627942 Bacillus pumilus SAFR-032 5621884 YP_001487833.1 CDS tyrS NC_009848.1 2628110 2629378 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(2628110..2629378) Bacillus pumilus SAFR-032 5621885 YP_001487834.1 CDS acsA1 NC_009848.1 2629728 2631452 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(2629728..2631452) Bacillus pumilus SAFR-032 5621886 YP_001487835.1 CDS acuA NC_009848.1 2631608 2632240 D acetoin dehydrogenase AcuA 2631608..2632240 Bacillus pumilus SAFR-032 5621887 YP_001487836.1 CDS acuB NC_009848.1 2632280 2632921 D acetoin dehydrogenase AcuB 2632280..2632921 Bacillus pumilus SAFR-032 5621888 YP_001487837.1 CDS acuC NC_009848.1 2632918 2634078 D acetoin dehydrogenase AcuC 2632918..2634078 Bacillus pumilus SAFR-032 5621889 YP_001487838.1 CDS ccpA NC_009848.1 2634121 2635122 R catabolite control protein A; PurR family transcriptional regulator complement(2634121..2635122) Bacillus pumilus SAFR-032 5621890 YP_001487839.1 CDS aroA NC_009848.1 2635575 2636651 R catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase complement(2635575..2636651) Bacillus pumilus SAFR-032 5621891 YP_001487840.1 CDS BPUM_2622 NC_009848.1 2636641 2636805 D hypothetical protein 2636641..2636805 Bacillus pumilus SAFR-032 5621892 YP_001487841.1 CDS ytxJ NC_009848.1 2636869 2637192 R hypothetical protein complement(2636869..2637192) Bacillus pumilus SAFR-032 5621893 YP_001487842.1 CDS ytxH NC_009848.1 2637226 2637696 R hypothetical protein complement(2637226..2637696) Bacillus pumilus SAFR-032 5621894 YP_001487843.1 CDS ytxG NC_009848.1 2637723 2638142 R hypothetical protein complement(2637723..2638142) Bacillus pumilus SAFR-032 5621895 YP_001487844.1 CDS murC NC_009848.1 2638367 2639665 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(2638367..2639665) Bacillus pumilus SAFR-032 5621896 YP_001487845.1 CDS ytpT NC_009848.1 2639969 2642650 R FtsK/SpoIIIE family cell division protein complement(2639969..2642650) Bacillus pumilus SAFR-032 5621897 YP_001487846.1 CDS ytpR NC_009848.1 2642912 2643517 R PheRS aminoacylate phenylalanine transfer RNA complement(2642912..2643517) Bacillus pumilus SAFR-032 5621898 YP_001487847.1 CDS ytpQ NC_009848.1 2643534 2644346 R hypothetical protein complement(2643534..2644346) Bacillus pumilus SAFR-032 5621899 YP_001487848.1 CDS ytpP NC_009848.1 2644366 2644686 R thioredoxin protein complement(2644366..2644686) Bacillus pumilus SAFR-032 5621900 YP_001487849.1 CDS BPUM_2631 NC_009848.1 2644673 2645701 R possible PfoR family toxin regulator; toxin regulator complement(2644673..2645701) Bacillus pumilus SAFR-032 5621901 YP_001487850.1 CDS ytoQ NC_009848.1 2645902 2646348 D hypothetical protein 2645902..2646348 Bacillus pumilus SAFR-032 5621902 YP_001487851.1 CDS ytoP NC_009848.1 2646562 2647635 R M42 family peptidase; glutamyl aminopeptidase complement(2646562..2647635) Bacillus pumilus SAFR-032 5621903 YP_001487852.1 CDS ytzB NC_009848.1 2647835 2648149 D hypothetical protein 2647835..2648149 Bacillus pumilus SAFR-032 5621904 YP_001487853.1 CDS malS NC_009848.1 2648193 2649890 R malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase complement(2648193..2649890) Bacillus pumilus SAFR-032 5621905 YP_001487854.1 CDS ytnP NC_009848.1 2649964 2650812 R metal dependent hydrolase complement(2649964..2650812) Bacillus pumilus SAFR-032 5621906 YP_001487855.1 CDS trmB NC_009848.1 2650927 2651568 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(2650927..2651568) Bacillus pumilus SAFR-032 5621907 YP_001487856.1 CDS ytzH NC_009848.1 2651757 2652032 D hypothetical protein 2651757..2652032 Bacillus pumilus SAFR-032 5621908 YP_001487857.1 CDS ytmP NC_009848.1 2652029 2652841 R choline kinase complement(2652029..2652841) Bacillus pumilus SAFR-032 5621909 YP_001487858.1 CDS ytlR NC_009848.1 2653115 2654044 R sphingosine kinase complement(2653115..2654044) Bacillus pumilus SAFR-032 5621910 YP_001487859.1 CDS ytlQ NC_009848.1 2654093 2655028 R hypothetical protein complement(2654093..2655028) Bacillus pumilus SAFR-032 5621911 YP_001487860.1 CDS ytlP NC_009848.1 2655054 2655605 R 2'-5' RNA ligase complement(2655054..2655605) Bacillus pumilus SAFR-032 5621912 YP_001487861.1 CDS ytkP NC_009848.1 2655700 2656629 D cysteine synthase 2655700..2656629 Bacillus pumilus SAFR-032 5621913 YP_001487862.1 CDS BPUM_2644 NC_009848.1 2656681 2657307 R S51 peptidase complement(2656681..2657307) Bacillus pumilus SAFR-032 5621914 YP_001487863.1 CDS ytjP NC_009848.1 2657331 2658740 R divalent metal ion-dependent extracellular dipeptidase; able to hydrolyze a broad range of dipeptides but no tri-, tetra-, or larger oligopeptides; differences in the amino acid specificity of the cleavage site varies between species; similar to succinyl-diaminopimelate desuccinylases; dipeptidase PepV complement(2657331..2658740) Bacillus pumilus SAFR-032 5621915 YP_001487864.1 CDS ytiP NC_009848.1 2658827 2660125 D NCS2 family nucleobase:cation symporter-2 2658827..2660125 Bacillus pumilus SAFR-032 5621916 YP_001487865.1 CDS ytzE NC_009848.1 2660497 2660718 D hypothetical protein 2660497..2660718 Bacillus pumilus SAFR-032 5621917 YP_001487866.1 CDS rsuA NC_009848.1 2660915 2661631 R pseudouridylate synthase complement(2660915..2661631) Bacillus pumilus SAFR-032 5621918 YP_001487867.1 CDS ytgP NC_009848.1 2661649 2663286 R PST family polysaccharide transporter complement(2661649..2663286) Bacillus pumilus SAFR-032 5621919 YP_001487868.1 CDS ytfP NC_009848.1 2663447 2664718 D flavoprotein 2663447..2664718 Bacillus pumilus SAFR-032 5621920 YP_001487869.1 CDS BPUM_2651 NC_009848.1 2664715 2664912 D hypothetical protein 2664715..2664912 Bacillus pumilus SAFR-032 5621921 YP_001487870.1 CDS opuD NC_009848.1 2665053 2666585 D BCCT family betaine transporter 2665053..2666585 Bacillus pumilus SAFR-032 5621922 YP_001487871.1 CDS cbrC NC_009848.1 2666688 2667236 D hypothetical protein 2666688..2667236 Bacillus pumilus SAFR-032 5621923 YP_001487872.1 CDS yteV NC_009848.1 2667279 2667470 R hypothetical protein complement(2667279..2667470) Bacillus pumilus SAFR-032 5621924 YP_001487873.1 CDS ytwF NC_009848.1 2667563 2667874 R rhodanese protein complement(2667563..2667874) Bacillus pumilus SAFR-032 5621925 YP_001487874.1 CDS yteU NC_009848.1 2667929 2668612 R integral membrane protein complement(2667929..2668612) Bacillus pumilus SAFR-032 5621926 YP_001487875.1 CDS yteT NC_009848.1 2668634 2669926 R dehydrogenase complement(2668634..2669926) Bacillus pumilus SAFR-032 5621927 YP_001487876.1 CDS yteS NC_009848.1 2669944 2670468 R hypothetical protein complement(2669944..2670468) Bacillus pumilus SAFR-032 5621928 YP_001487877.1 CDS yteR NC_009848.1 2670465 2671577 R unsaturated glucuronyl hydrolase complement(2670465..2671577) Bacillus pumilus SAFR-032 5621929 YP_001487878.1 CDS lplBA NC_009848.1 2671596 2672561 R ABC transporter ATP-binding protein complement(2671596..2672561) Bacillus pumilus SAFR-032 5621930 YP_001487879.1 CDS ytdP NC_009848.1 2672781 2675093 D transcriptional regulator 2672781..2675093 Bacillus pumilus SAFR-032 5621931 YP_001487880.1 CDS ytcD NC_009848.1 2675129 2675533 R transcriptional regulator complement(2675129..2675533) Bacillus pumilus SAFR-032 5621932 YP_001487881.1 CDS BPUM_2663 NC_009848.1 2675656 2676861 D major facilitator superfamily transporter 2675656..2676861 Bacillus pumilus SAFR-032 5621933 YP_001487882.1 CDS ytbE NC_009848.1 2676858 2677697 D Ara1; aldo/keto reductase 2676858..2677697 Bacillus pumilus SAFR-032 5621934 YP_001487883.1 CDS ytcQ NC_009848.1 2677743 2679242 R ABC transporter ATP-binding protein complement(2677743..2679242) Bacillus pumilus SAFR-032 5621935 YP_001487884.1 CDS ytcP NC_009848.1 2679268 2680146 R ABC transporter ATP-binding protein complement(2679268..2680146) Bacillus pumilus SAFR-032 5621936 YP_001487885.1 CDS ytbQ NC_009848.1 2680348 2681097 R hypothetical protein complement(2680348..2681097) Bacillus pumilus SAFR-032 5621937 YP_001487886.1 CDS ytaP NC_009848.1 2681147 2682076 R possible S09C acylaminoacyl peptidase; hypothetical protein complement(2681147..2682076) Bacillus pumilus SAFR-032 5621938 YP_001487887.1 CDS leuS NC_009848.1 2682179 2684728 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(2682179..2684728) Bacillus pumilus SAFR-032 5621939 YP_001487888.1 CDS ytvB NC_009848.1 2685016 2685432 R hypothetical protein complement(2685016..2685432) Bacillus pumilus SAFR-032 5621940 YP_001487889.1 CDS ytvA1 NC_009848.1 2685771 2686574 D hypothetical protein 2685771..2686574 Bacillus pumilus SAFR-032 5621941 YP_001487890.1 CDS yttA NC_009848.1 2686664 2687362 D hypothetical protein 2686664..2687362 Bacillus pumilus SAFR-032 5621942 YP_001487891.1 CDS ytrF NC_009848.1 2687426 2688736 R ABC transporter ATP-binding protein complement(2687426..2688736) Bacillus pumilus SAFR-032 5621943 YP_001487892.1 CDS ytrE NC_009848.1 2688726 2689424 R ABC transporter ATP-binding protein complement(2688726..2689424) Bacillus pumilus SAFR-032 5621944 YP_001487893.1 CDS ytrC NC_009848.1 2689445 2690437 R ABC transporter ATP-binding protein complement(2689445..2690437) Bacillus pumilus SAFR-032 5621945 YP_001487894.1 CDS ytrB NC_009848.1 2690431 2691327 R possible CcmAABC superfamily ATP binding cassette transporter, ABC protein; ABC transporter ATP-binding protein complement(2690431..2691327) Bacillus pumilus SAFR-032 5621946 YP_001487895.1 CDS ytrA NC_009848.1 2691302 2691715 R transcriptional regulator complement(2691302..2691715) Bacillus pumilus SAFR-032 5621947 YP_001487896.1 CDS BPUM_2678 NC_009848.1 2691712 2691891 R hypothetical protein complement(2691712..2691891) Bacillus pumilus SAFR-032 5621948 YP_001487897.1 CDS ytzC NC_009848.1 2692033 2692332 R hypothetical protein complement(2692033..2692332) Bacillus pumilus SAFR-032 5621949 YP_001487898.1 CDS BPUM_2680 NC_009848.1 2692461 2693426 D hypothetical protein 2692461..2693426 Bacillus pumilus SAFR-032 5621950 YP_001487899.1 CDS ytqB NC_009848.1 2693423 2693998 D rRNA methyltransferase 2693423..2693998 Bacillus pumilus SAFR-032 5621951 YP_001487900.1 CDS ytpB NC_009848.1 2694014 2695093 R hypothetical protein complement(2694014..2695093) Bacillus pumilus SAFR-032 5621952 YP_001487901.1 CDS ytpA NC_009848.1 2695124 2695903 R possible PldB family lysophospholipase; lysophospholipase complement(2695124..2695903) Bacillus pumilus SAFR-032 5621953 YP_001487902.1 CDS ytoA NC_009848.1 2695949 2696464 D possible PaaY family carbonic anhydrase; acetyltransferase 2695949..2696464 Bacillus pumilus SAFR-032 5621954 YP_001487903.1 CDS asnB NC_009848.1 2696606 2698504 R asparagine synthase complement(2696606..2698504) Bacillus pumilus SAFR-032 5621955 YP_001487904.1 CDS metK NC_009848.1 2698653 2699855 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(2698653..2699855) Bacillus pumilus SAFR-032 5621956 YP_001487905.1 CDS pckA NC_009848.1 2700412 2701998 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 2700412..2701998 Bacillus pumilus SAFR-032 5621957 YP_001487906.1 CDS BPUM_2688 NC_009848.1 2702041 2702283 R hypothetical protein complement(2702041..2702283) Bacillus pumilus SAFR-032 5621958 YP_001487907.1 CDS ytmA NC_009848.1 2702323 2703117 R peptidase complement(2702323..2703117) Bacillus pumilus SAFR-032 5621959 YP_001487908.1 CDS BPUM_2690 NC_009848.1 2703144 2704625 R phytoene dehydrogenase complement(2703144..2704625) Bacillus pumilus SAFR-032 5621960 YP_001487909.1 CDS BPUM_2691 NC_009848.1 2704622 2705749 R glycosyltransferase complement(2704622..2705749) Bacillus pumilus SAFR-032 5621961 YP_001487910.1 CDS BPUM_2692 NC_009848.1 2705734 2706390 R phospholipid/glycerol acyltransferase complement(2705734..2706390) Bacillus pumilus SAFR-032 5621962 YP_001487911.1 CDS BPUM_2693 NC_009848.1 2706449 2707177 R hypothetical protein complement(2706449..2707177) Bacillus pumilus SAFR-032 5621963 YP_001487912.1 CDS BPUM_2694 NC_009848.1 2707351 2708352 D ABC transporter ATP-binding protein 2707351..2708352 Bacillus pumilus SAFR-032 5621964 YP_001487913.1 CDS ytlC NC_009848.1 2708368 2709138 D ABC transporter ATP-binding protein 2708368..2709138 Bacillus pumilus SAFR-032 5621965 YP_001487914.1 CDS ytlD NC_009848.1 2709125 2709919 D ABC transporter ATP-binding protein 2709125..2709919 Bacillus pumilus SAFR-032 5621966 YP_001487915.1 CDS ytkD NC_009848.1 2709952 2710428 R MutT/NUDIX family phosphohydrolase complement(2709952..2710428) Bacillus pumilus SAFR-032 5621967 YP_001487916.1 CDS BPUM_2698 NC_009848.1 2710677 2711330 D stress protein 2710677..2711330 Bacillus pumilus SAFR-032 5621968 YP_001487917.1 CDS BPUM_2699 NC_009848.1 2711353 2712144 D hypothetical protein 2711353..2712144 Bacillus pumilus SAFR-032 5621969 YP_001487918.1 CDS BPUM_2700 NC_009848.1 2712174 2712482 R possible hydrolase; hypothetical protein complement(2712174..2712482) Bacillus pumilus SAFR-032 5621970 YP_001487919.1 CDS ytkC NC_009848.1 2712526 2712930 R possible phage holin; hypothetical protein complement(2712526..2712930) Bacillus pumilus SAFR-032 5621971 YP_001487920.1 CDS BPUM_2702 NC_009848.1 2713068 2713259 R hypothetical protein complement(2713068..2713259) Bacillus pumilus SAFR-032 5621972 YP_001487921.1 CDS dpsA NC_009848.1 2713385 2713822 R YtkB; DNA-binding protein DpsA complement(2713385..2713822) Bacillus pumilus SAFR-032 5621973 YP_001487922.1 CDS ytkA NC_009848.1 2714109 2714543 R hypothetical protein complement(2714109..2714543) Bacillus pumilus SAFR-032 5621974 YP_001487923.1 CDS luxS NC_009848.1 2714658 2715131 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(2714658..2715131) Bacillus pumilus SAFR-032 5621975 YP_001487924.1 CDS ytjA NC_009848.1 2715258 2715482 D hypothetical protein 2715258..2715482 Bacillus pumilus SAFR-032 5621976 YP_001487925.1 CDS ytiB NC_009848.1 2715484 2716047 R carbonate dehydratase complement(2715484..2716047) Bacillus pumilus SAFR-032 5621977 YP_001487926.1 CDS BPUM_2708 NC_009848.1 2716262 2717251 D ABC transporter ATP-binding protein 2716262..2717251 Bacillus pumilus SAFR-032 5621978 YP_001487927.1 CDS rpmE2 NC_009848.1 2717345 2717587 R RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(2717345..2717587) Bacillus pumilus SAFR-032 5621979 YP_001487928.1 CDS BPUM_2710 NC_009848.1 2717763 2719094 D YthA; cytochrome bd ubiquinol oxidase, subunit I 2717763..2719094 Bacillus pumilus SAFR-032 5621980 YP_001487929.1 CDS BPUM_2711 NC_009848.1 2719110 2720162 D cytochrome bd quinol oxidase, subunit II 2719110..2720162 Bacillus pumilus SAFR-032 5621981 YP_001487930.1 CDS BPUM_2712 NC_009848.1 2720231 2720389 D hypothetical protein 2720231..2720389 Bacillus pumilus SAFR-032 5621982 YP_001487931.1 CDS BPUM_2713 NC_009848.1 2720415 2720606 D hypothetical protein 2720415..2720606 Bacillus pumilus SAFR-032 5621983 YP_001487932.1 CDS menC NC_009848.1 2720713 2721837 R o-succinylbenzoate-CoA synthase complement(2720713..2721837) Bacillus pumilus SAFR-032 5621984 YP_001487933.1 CDS menE NC_009848.1 2721824 2723284 R converts O-succinylbenzoate to O-succinylbenzoyl-CoA; O-succinylbenzoic acid--CoA ligase complement(2721824..2723284) Bacillus pumilus SAFR-032 5621985 YP_001487934.1 CDS menB NC_009848.1 2723356 2724174 R catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase complement(2723356..2724174) Bacillus pumilus SAFR-032 5621986 YP_001487935.1 CDS ytxM NC_009848.1 2724189 2725013 R hydrolase complement(2724189..2725013) Bacillus pumilus SAFR-032 5621987 YP_001487936.1 CDS menD NC_009848.1 2724998 2726740 R SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase complement(2724998..2726740) Bacillus pumilus SAFR-032 5621988 YP_001487937.1 CDS menF NC_009848.1 2726733 2728151 R isochorismate synthase complement(2726733..2728151) Bacillus pumilus SAFR-032 5621989 YP_001487938.1 CDS menA NC_009848.1 2728533 2729471 D catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 2728533..2729471 Bacillus pumilus SAFR-032 5621990 YP_001487939.1 CDS BPUM_2721 NC_009848.1 2729464 2729586 D hypothetical protein 2729464..2729586 Bacillus pumilus SAFR-032 5621991 YP_001487940.1 CDS dksA NC_009848.1 2729595 2730326 D YteA; DnaK suppressor protein 2729595..2730326 Bacillus pumilus SAFR-032 5621992 YP_001487941.1 CDS BPUM_2723 NC_009848.1 2730412 2730888 D YtaB; hypothetical protein 2730412..2730888 Bacillus pumilus SAFR-032 5621993 YP_001487942.1 CDS BPUM_2725 NC_009848.1 2738885 2739460 D YuaJ; PTT family thiamin transporter 2738885..2739460 Bacillus pumilus SAFR-032 5622018 YP_001487943.1 CDS BPUM_2726 NC_009848.1 2739553 2739741 D hypothetical protein 2739553..2739741 Bacillus pumilus SAFR-032 5622019 YP_001487944.1 CDS BPUM_2727 NC_009848.1 2739701 2740255 R YuaI; acetyltransferase complement(2739701..2740255) Bacillus pumilus SAFR-032 5622020 YP_001487945.1 CDS BPUM_2728 NC_009848.1 2740424 2741059 D hypothetical protein 2740424..2741059 Bacillus pumilus SAFR-032 5622021 YP_001487946.1 CDS BPUM_2729 NC_009848.1 2741074 2742228 D possible stage V sporulation protein E SpoVE; FtsW/RodA/SpoVE family cell division protein 2741074..2742228 Bacillus pumilus SAFR-032 5622022 YP_001487947.1 CDS BPUM_2731 NC_009848.1 2743396 2744943 R flotillin complement(2743396..2744943) Bacillus pumilus SAFR-032 5622024 YP_001487948.1 CDS yuaF NC_009848.1 2744955 2745485 R hypothetical protein complement(2744955..2745485) Bacillus pumilus SAFR-032 5622025 YP_001487949.1 CDS yuaE NC_009848.1 2745660 2746169 D hypothetical protein 2745660..2746169 Bacillus pumilus SAFR-032 5622026 YP_001487950.1 CDS gbsB NC_009848.1 2746209 2747417 R alcohol dehydrogenase complement(2746209..2747417) Bacillus pumilus SAFR-032 5622027 YP_001487951.1 CDS gbsA NC_009848.1 2747445 2748914 R betaine aldehyde dehydrogenase complement(2747445..2748914) Bacillus pumilus SAFR-032 5622028 YP_001487952.1 CDS yuaC NC_009848.1 2749122 2749679 D transcriptional regulator 2749122..2749679 Bacillus pumilus SAFR-032 5622029 YP_001487953.1 CDS BPUM_2737 NC_009848.1 2749879 2750067 R hypothetical protein complement(2749879..2750067) Bacillus pumilus SAFR-032 5622031 YP_001487954.1 CDS BPUM_2738 NC_009848.1 2750182 2751006 R M15C subfamily peptidase complement(2750182..2751006) Bacillus pumilus SAFR-032 5622032 YP_001487955.1 CDS BPUM_2739 NC_009848.1 2751063 2752133 R YkrP; acyltransferase complement(2751063..2752133) Bacillus pumilus SAFR-032 5622033 YP_001487956.1 CDS xhlB NC_009848.1 2752196 2752459 R holin XhlB complement(2752196..2752459) Bacillus pumilus SAFR-032 5622034 YP_001487957.1 CDS bhlA NC_009848.1 2752471 2752683 R possible bacteriocin precursor; holin BhlA complement(2752471..2752683) Bacillus pumilus SAFR-032 5622035 YP_001487958.1 CDS BPUM_2742 NC_009848.1 2752818 2753903 R hypothetical protein complement(2752818..2753903) Bacillus pumilus SAFR-032 5622036 YP_001487959.1 CDS BPUM_2743 NC_009848.1 2754046 2754156 R hypothetical protein complement(2754046..2754156) Bacillus pumilus SAFR-032 5622037 YP_001487960.1 CDS BPUM_2744 NC_009848.1 2754157 2754252 R hypothetical protein complement(2754157..2754252) Bacillus pumilus SAFR-032 5622038 YP_001487961.1 CDS BPUM_2745 NC_009848.1 2754320 2755534 R hypothetical protein complement(2754320..2755534) Bacillus pumilus SAFR-032 5622039 YP_001487962.1 CDS BPUM_2746 NC_009848.1 2755874 2756047 R hypothetical protein complement(2755874..2756047) Bacillus pumilus SAFR-032 5622040 YP_001487963.1 CDS BPUM_2747 NC_009848.1 2756044 2756373 R hypothetical protein complement(2756044..2756373) Bacillus pumilus SAFR-032 5622041 YP_001487964.1 CDS BPUM_2748 NC_009848.1 2756383 2757261 R hypothetical protein complement(2756383..2757261) Bacillus pumilus SAFR-032 5622042 YP_001487965.1 CDS BPUM_2749 NC_009848.1 2757276 2757659 R hypothetical protein complement(2757276..2757659) Bacillus pumilus SAFR-032 5622043 YP_001487966.1 CDS xkdU NC_009848.1 2757671 2758594 R hypothetical protein complement(2757671..2758594) Bacillus pumilus SAFR-032 5622044 YP_001487967.1 CDS xkdT NC_009848.1 2758578 2759627 R bacteriophage baseplate assembly protein J complement(2758578..2759627) Bacillus pumilus SAFR-032 5622045 YP_001487968.1 CDS xkdS NC_009848.1 2759620 2760042 R hypothetical protein complement(2759620..2760042) Bacillus pumilus SAFR-032 5622046 YP_001487969.1 CDS xkdR NC_009848.1 2760057 2760323 R hypothetical protein complement(2760057..2760323) Bacillus pumilus SAFR-032 5622047 YP_001487970.1 CDS yqbQ NC_009848.1 2760320 2761330 R XkdQ; hypothetical protein complement(2760320..2761330) Bacillus pumilus SAFR-032 5622048 YP_001487971.1 CDS xkdP NC_009848.1 2761342 2762010 R hypothetical protein complement(2761342..2762010) Bacillus pumilus SAFR-032 5622049 YP_001487972.1 CDS xkdO NC_009848.1 2762003 2766136 R hypothetical protein complement(2762003..2766136) Bacillus pumilus SAFR-032 5622050 YP_001487973.1 CDS xkdN2 NC_009848.1 2766137 2766292 R hypothetical protein complement(2766137..2766292) Bacillus pumilus SAFR-032 5622051 YP_001487974.1 CDS xkdN1 NC_009848.1 2766316 2766756 R hypothetical protein complement(2766316..2766756) Bacillus pumilus SAFR-032 5622052 YP_001487976.1 CDS xkdM NC_009848.1 2767284 2767727 R hypothetical protein complement(2767284..2767727) Bacillus pumilus SAFR-032 5622054 YP_001487977.1 CDS xkdK NC_009848.1 2767729 2769075 R hypothetical protein complement(2767729..2769075) Bacillus pumilus SAFR-032 5622055 YP_001487978.1 CDS BPUM_2762 NC_009848.1 2769079 2769291 R hypothetical protein complement(2769079..2769291) Bacillus pumilus SAFR-032 5622056 YP_001487979.1 CDS yqbJ NC_009848.1 2769278 2769733 R XkdJ; hypothetical protein complement(2769278..2769733) Bacillus pumilus SAFR-032 5622057 YP_001487980.1 CDS yqbI NC_009848.1 2769738 2770235 R XkdI; hypothetical protein complement(2769738..2770235) Bacillus pumilus SAFR-032 5622058 YP_001487981.1 CDS yqbH NC_009848.1 2770232 2770588 R hypothetical protein complement(2770232..2770588) Bacillus pumilus SAFR-032 5622059 YP_001487982.1 CDS yqbG NC_009848.1 2770585 2770968 R hypothetical protein complement(2770585..2770968) Bacillus pumilus SAFR-032 5622060 YP_001487983.1 CDS xkdG NC_009848.1 2770982 2771905 R hypothetical protein complement(2770982..2771905) Bacillus pumilus SAFR-032 5622061 YP_001487984.1 CDS yqbD NC_009848.1 2771928 2773016 R XkdF; hypothetical protein complement(2771928..2773016) Bacillus pumilus SAFR-032 5622062 YP_001487985.1 CDS yqbA NC_009848.1 2773055 2774512 R XkdE; capsid portal protein complement(2773055..2774512) Bacillus pumilus SAFR-032 5622063 YP_001487986.1 CDS yqaT NC_009848.1 2774509 2775822 R terminase large subunit complement(2774509..2775822) Bacillus pumilus SAFR-032 5622064 YP_001487987.1 CDS yqaS NC_009848.1 2775819 2776463 R terminase small subunit complement(2775819..2776463) Bacillus pumilus SAFR-032 5622065 YP_001487988.1 CDS xpf NC_009848.1 2776616 2777134 R Positive regulatory protein that acts at the late promoter PL; positive control sigma-like factor complement(2776616..2777134) Bacillus pumilus SAFR-032 5622066 YP_001487989.1 CDS yqaO NC_009848.1 2777260 2777466 R hypothetical protein complement(2777260..2777466) Bacillus pumilus SAFR-032 5622067 YP_001487990.1 CDS yqaN NC_009848.1 2777479 2777865 R hypothetical protein complement(2777479..2777865) Bacillus pumilus SAFR-032 5622068 YP_001487991.1 CDS BPUM_2775 NC_009848.1 2777916 2778158 R hypothetical protein complement(2777916..2778158) Bacillus pumilus SAFR-032 5622069 YP_001487992.1 CDS BPUM_2776 NC_009848.1 2778285 2778548 R hypothetical protein complement(2778285..2778548) Bacillus pumilus SAFR-032 5622070 YP_001487993.1 CDS xre NC_009848.1 2778707 2779084 D transcriptional regulator 2778707..2779084 Bacillus pumilus SAFR-032 5622071 YP_001487994.1 CDS BPUM_2778 NC_009848.1 2779282 2779632 D hypothetical protein 2779282..2779632 Bacillus pumilus SAFR-032 5622072 YP_001487995.1 CDS bioB NC_009848.1 2779837 2780832 D catalyzes the formation of biotin from dethiobiotin and sulfur 2 S-adenosyl-L-methionine; biotin synthase 2779837..2780832 Bacillus pumilus SAFR-032 5622073 YP_001487996.1 CDS BPUM_2780 NC_009848.1 2780874 2781347 R hypothetical protein complement(2780874..2781347) Bacillus pumilus SAFR-032 5622074 YP_001487997.1 CDS uppP NC_009848.1 2783045 2783923 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(2783045..2783923) Bacillus pumilus SAFR-032 5622076 YP_001487998.1 CDS yubA NC_009848.1 2784006 2785148 R hypothetical protein complement(2784006..2785148) Bacillus pumilus SAFR-032 5622077 YP_001487999.1 CDS BPUM_2784 NC_009848.1 2785214 2785606 R hypothetical protein complement(2785214..2785606) Bacillus pumilus SAFR-032 5622078 YP_001488000.1 CDS BPUM_2785 NC_009848.1 2785808 2786791 D YulF; dehydrogenase 2785808..2786791 Bacillus pumilus SAFR-032 5622079 YP_001488001.1 CDS BPUM_2786 NC_009848.1 2786875 2787399 R C56 family peptidase complement(2786875..2787399) Bacillus pumilus SAFR-032 5622080 YP_001488002.1 CDS BPUM_2787 NC_009848.1 2787490 2789478 R sensor histidine kinase complement(2787490..2789478) Bacillus pumilus SAFR-032 5622081 YP_001488003.1 CDS BPUM_2788 NC_009848.1 2789644 2791620 R sensor histidine kinase complement(2789644..2791620) Bacillus pumilus SAFR-032 5622082 YP_001488004.1 CDS BPUM_2789 NC_009848.1 2791798 2793789 R methyl-accepting chemotaxis protein complement(2791798..2793789) Bacillus pumilus SAFR-032 5622083 YP_001488005.1 CDS BPUM_2790 NC_009848.1 2793915 2795906 R methyl-accepting chemotaxis protein complement(2793915..2795906) Bacillus pumilus SAFR-032 5622084 YP_001488006.1 CDS BPUM_2791 NC_009848.1 2795932 2796033 R hypothetical protein complement(2795932..2796033) Bacillus pumilus SAFR-032 5622085 YP_001488007.1 CDS tgl NC_009848.1 2796063 2796803 D involved in assembly of spore coat proteins such as GerQ by catalyzing epsilon-(gamma-glutamyl)lysine cross links; transglutaminase 2796063..2796803 Bacillus pumilus SAFR-032 5622086 YP_001488008.1 CDS BPUM_2793 NC_009848.1 2796825 2797073 R hypothetical protein complement(2796825..2797073) Bacillus pumilus SAFR-032 5622087 YP_001488009.1 CDS BPUM_2794 NC_009848.1 2797098 2798129 R 2-nitropropane dioxygenase complement(2797098..2798129) Bacillus pumilus SAFR-032 5622088 YP_001488010.1 CDS BPUM_2795 NC_009848.1 2798146 2798547 R hypothetical protein complement(2798146..2798547) Bacillus pumilus SAFR-032 5622089 YP_001488011.1 CDS BPUM_2796 NC_009848.1 2798681 2799973 R YugS; HCC family HlyC/CorC transporter complement(2798681..2799973) Bacillus pumilus SAFR-032 5622090 YP_001488012.1 CDS BPUM_2797 NC_009848.1 2800022 2800699 R hypothetical protein complement(2800022..2800699) Bacillus pumilus SAFR-032 5622091 YP_001488013.1 CDS BPUM_2798 NC_009848.1 2800778 2801002 R hypothetical protein complement(2800778..2801002) Bacillus pumilus SAFR-032 5622092 YP_001488014.1 CDS BPUM_2799 NC_009848.1 2801120 2802106 D YugO; VIC family voltage gated ion channel 2801120..2802106 Bacillus pumilus SAFR-032 5622093 YP_001488015.1 CDS yugN NC_009848.1 2802103 2802504 R hypothetical protein complement(2802103..2802504) Bacillus pumilus SAFR-032 5622094 YP_001488016.1 CDS BPUM_2801 NC_009848.1 2802537 2802755 R hypothetical protein complement(2802537..2802755) Bacillus pumilus SAFR-032 5622095 YP_001488017.1 CDS pgi NC_009848.1 2802868 2804223 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(2802868..2804223) Bacillus pumilus SAFR-032 5622096 YP_001488018.1 CDS yugK NC_009848.1 2804351 2805523 R alcohol dehydrogenase complement(2804351..2805523) Bacillus pumilus SAFR-032 5622097 YP_001488019.1 CDS yugJ NC_009848.1 2805645 2806808 R alcohol dehydrogenase complement(2805645..2806808) Bacillus pumilus SAFR-032 5622098 YP_001488020.1 CDS BPUM_2805 NC_009848.1 2806953 2807189 D YuzA; hypothetical protein 2806953..2807189 Bacillus pumilus SAFR-032 5622099 YP_001488021.1 CDS yugI NC_009848.1 2807258 2807650 R induced by heat shock, salt stress, oxidative stress, glucose limitation and oxygen limitation; general stress protein 13 complement(2807258..2807650) Bacillus pumilus SAFR-032 5622100 YP_001488022.1 CDS BPUM_2807 NC_009848.1 2807849 2809042 R hypothetical protein complement(2807849..2809042) Bacillus pumilus SAFR-032 5622101 YP_001488023.1 CDS BPUM_2808 NC_009848.1 2809043 2809543 R YugG; hypothetical protein complement(2809043..2809543) Bacillus pumilus SAFR-032 5622102 YP_001488024.1 CDS BPUM_2809 NC_009848.1 2809720 2810544 D YugF; alpha/beta hydrolase 2809720..2810544 Bacillus pumilus SAFR-032 5622103 YP_001488025.1 CDS yugE NC_009848.1 2810541 2810801 R hypothetical protein complement(2810541..2810801) Bacillus pumilus SAFR-032 5622104 YP_001488026.1 CDS BPUM_2811 NC_009848.1 2810885 2812060 D aminotransferase 2810885..2812060 Bacillus pumilus SAFR-032 5622105 YP_001488027.1 CDS BPUM_2812 NC_009848.1 2812194 2813486 D sensor histidine kinase 2812194..2813486 Bacillus pumilus SAFR-032 5622106 YP_001488028.1 CDS BPUM_2813 NC_009848.1 2813487 2813666 R hypothetical protein complement(2813487..2813666) Bacillus pumilus SAFR-032 5622107 YP_001488029.1 CDS kapB NC_009848.1 2813758 2814150 D kinase associated protein B 2813758..2814150 Bacillus pumilus SAFR-032 5622108 YP_001488030.1 CDS kapD NC_009848.1 2814147 2814767 R inhibitor of the KinA pathway of sporulation; sporulation inhibitor KapD complement(2814147..2814767) Bacillus pumilus SAFR-032 5622109 YP_001488031.1 CDS BPUM_2816 NC_009848.1 2814974 2816161 D major facilitator superfamily transporter 2814974..2816161 Bacillus pumilus SAFR-032 5622110 YP_001488032.1 CDS pbpD NC_009848.1 2816270 2818171 D penicillin binding protein 4 2816270..2818171 Bacillus pumilus SAFR-032 5622111 YP_001488033.1 CDS BPUM_2818 NC_009848.1 2818190 2818600 D thiol-disulfide dehydrogenase 2818190..2818600 Bacillus pumilus SAFR-032 5622112 YP_001488034.1 CDS BPUM_2819 NC_009848.1 2818645 2819202 R hypothetical protein complement(2818645..2819202) Bacillus pumilus SAFR-032 5622113 YP_001488035.1 CDS BPUM_2820 NC_009848.1 2819389 2820990 D C4-dicarboxylate-sensing histidine kinase; part of two-component regulatory system with DcuR; regulates anaerobic fumarate respiration; sensory histidine kinase DcuS 2819389..2820990 Bacillus pumilus SAFR-032 5622114 YP_001488036.1 CDS BPUM_2821 NC_009848.1 2820983 2821690 D response regulator 2820983..2821690 Bacillus pumilus SAFR-032 5622115 YP_001488037.1 CDS BPUM_2822 NC_009848.1 2821692 2821850 D hypothetical protein 2821692..2821850 Bacillus pumilus SAFR-032 5622116 YP_001488038.1 CDS BPUM_2823 NC_009848.1 2822085 2823167 D ABC transporter ATP-binding protein 2822085..2823167 Bacillus pumilus SAFR-032 5622117 YP_001488039.1 CDS BPUM_2824 NC_009848.1 2823327 2824862 D ABC transporter ATP-binding protein 2823327..2824862 Bacillus pumilus SAFR-032 5622118 YP_001488040.1 CDS BPUM_2825 NC_009848.1 2824855 2825901 D ABC transporter ATP-binding protein 2824855..2825901 Bacillus pumilus SAFR-032 5622119 YP_001488041.1 CDS BPUM_2826 NC_009848.1 2825902 2826861 D ABC transporter ATP-binding protein 2825902..2826861 Bacillus pumilus SAFR-032 5622120 YP_001488042.1 CDS BPUM_2827 NC_009848.1 2827037 2828374 D CCS family citrate:cation symporter 2827037..2828374 Bacillus pumilus SAFR-032 5622121 YP_001488043.1 CDS yufS NC_009848.1 2828446 2828655 R hypothetical protein complement(2828446..2828655) Bacillus pumilus SAFR-032 5622122 YP_001488044.1 CDS mrpA NC_009848.1 2828875 2831280 D subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit A 2828875..2831280 Bacillus pumilus SAFR-032 5622123 YP_001488045.1 CDS mrpB NC_009848.1 2831277 2831708 D subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in the case of S. meliloti it was proved to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit B 2831277..2831708 Bacillus pumilus SAFR-032 5622124 YP_001488046.1 CDS mrpC NC_009848.1 2831708 2832049 D subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C 2831708..2832049 Bacillus pumilus SAFR-032 5622125 YP_001488047.1 CDS mrpD NC_009848.1 2832033 2833520 D subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D 2832033..2833520 Bacillus pumilus SAFR-032 5622126 YP_001488048.1 CDS mrpE NC_009848.1 2833527 2834006 D subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit E 2833527..2834006 Bacillus pumilus SAFR-032 5622127 YP_001488049.1 CDS mrpF NC_009848.1 2834006 2834287 D subunit F of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit F 2834006..2834287 Bacillus pumilus SAFR-032 5622128 YP_001488050.1 CDS mrpG NC_009848.1 2834271 2834645 D subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G 2834271..2834645 Bacillus pumilus SAFR-032 5622129 YP_001488051.1 CDS BPUM_2836 NC_009848.1 2834731 2835120 R thioesterase complement(2834731..2835120) Bacillus pumilus SAFR-032 5622130 YP_001488052.1 CDS comA NC_009848.1 2835144 2835785 R response regulator ComA complement(2835144..2835785) Bacillus pumilus SAFR-032 5622131 YP_001488053.1 CDS comP NC_009848.1 2835866 2838172 R sensor histidine kinase ComP complement(2835866..2838172) Bacillus pumilus SAFR-032 5622132 YP_001488054.1 CDS comX NC_009848.1 2838186 2838356 R competence pheromone precursor ComX complement(2838186..2838356) Bacillus pumilus SAFR-032 5622133 YP_001488055.1 CDS BPUM_2840 NC_009848.1 2838334 2839257 R hypothetical protein complement(2838334..2839257) Bacillus pumilus SAFR-032 5622134 YP_001488056.1 CDS degQ NC_009848.1 2839409 2839549 R degradation enzyme regulation protein DegQ complement(2839409..2839549) Bacillus pumilus SAFR-032 5622135 YP_001488057.1 CDS BPUM_2842 NC_009848.1 2840055 2840408 D YuzC; hypothetical protein 2840055..2840408 Bacillus pumilus SAFR-032 5622136 YP_001488058.1 CDS BPUM_2843 NC_009848.1 2840440 2841666 R metal-dependent hydrolase complement(2840440..2841666) Bacillus pumilus SAFR-032 5622137 YP_001488059.1 CDS pncB NC_009848.1 2841806 2843275 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase complement(2841806..2843275) Bacillus pumilus SAFR-032 5622138 YP_001488060.1 CDS pncA NC_009848.1 2843293 2843844 R nicotinamidase complement(2843293..2843844) Bacillus pumilus SAFR-032 5622139 YP_001488061.1 CDS BPUM_2846 NC_009848.1 2843905 2844312 R hypothetical protein complement(2843905..2844312) Bacillus pumilus SAFR-032 5622140 YP_001488062.1 CDS BPUM_2847 NC_009848.1 2844339 2844677 R YueF; hypothetical protein complement(2844339..2844677) Bacillus pumilus SAFR-032 5622141 YP_001488063.1 CDS yueG1 NC_009848.1 2844684 2844905 R spore germination protein YueG1 complement(2844684..2844905) Bacillus pumilus SAFR-032 5622142 YP_001488064.1 CDS yueG2 NC_009848.1 2845005 2845226 R spore germination protein YueG2 complement(2845005..2845226) Bacillus pumilus SAFR-032 5622143 YP_001488065.1 CDS BPUM_2850 NC_009848.1 2845293 2846396 R hypothetical protein complement(2845293..2846396) Bacillus pumilus SAFR-032 5622144 YP_001488066.1 CDS BPUM_2851 NC_009848.1 2846582 2846818 R hypothetical protein complement(2846582..2846818) Bacillus pumilus SAFR-032 5622145 YP_001488067.1 CDS BPUM_2852 NC_009848.1 2847001 2848485 D hypothetical protein 2847001..2848485 Bacillus pumilus SAFR-032 5622146 YP_001488068.1 CDS BPUM_2853 NC_009848.1 2848482 2849015 R metal-dependent phosphohydrolase complement(2848482..2849015) Bacillus pumilus SAFR-032 5622147 YP_001488069.1 CDS BPUM_2854 NC_009848.1 2849161 2849853 R short chain dehydrogenase complement(2849161..2849853) Bacillus pumilus SAFR-032 5622148 YP_001488070.1 CDS BPUM_2855 NC_009848.1 2850003 2850488 R hypothetical protein complement(2850003..2850488) Bacillus pumilus SAFR-032 5622149 YP_001488071.1 CDS BPUM_2856 NC_009848.1 2850478 2853375 R hypothetical protein complement(2850478..2853375) Bacillus pumilus SAFR-032 5622150 YP_001488072.1 CDS BPUM_2857 NC_009848.1 2853372 2857847 R FtsK/SpoIIIE family cell division protein YukA complement(2853372..2857847) Bacillus pumilus SAFR-032 5622151 YP_001488073.1 CDS BPUM_2858 NC_009848.1 2857899 2859215 R hypothetical protein complement(2857899..2859215) Bacillus pumilus SAFR-032 5622152 YP_001488074.1 CDS yukD NC_009848.1 2859230 2859469 R hypothetical protein complement(2859230..2859469) Bacillus pumilus SAFR-032 5622153 YP_001488075.1 CDS BPUM_2860 NC_009848.1 2859565 2859858 R hypothetical protein complement(2859565..2859858) Bacillus pumilus SAFR-032 5622154 YP_001488076.1 CDS BPUM_2861 NC_009848.1 2860263 2861492 D hypothetical protein 2860263..2861492 Bacillus pumilus SAFR-032 5622155 YP_001488077.1 CDS ald NC_009848.1 2861603 2862739 D stage V sporulation protein N SpoVN; alanine dehydrogenase 2861603..2862739 Bacillus pumilus SAFR-032 5622156 YP_001488078.1 CDS bioY NC_009848.1 2862855 2863451 D YuiG; biotin synthase 2862855..2863451 Bacillus pumilus SAFR-032 5622157 YP_001488079.1 CDS spo0M NC_009848.1 2863509 2864285 R stage 0 sporulation control protein M complement(2863509..2864285) Bacillus pumilus SAFR-032 5622158 YP_001488080.1 CDS BPUM_2865 NC_009848.1 2864463 2865791 R YuiF; GntP family gluconate:proton (H+) symporter complement(2864463..2865791) Bacillus pumilus SAFR-032 5622159 YP_001488081.1 CDS pepA NC_009848.1 2865933 2867423 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(2865933..2867423) Bacillus pumilus SAFR-032 5622160 YP_001488082.1 CDS BPUM_2867 NC_009848.1 2867463 2867576 D hypothetical protein 2867463..2867576 Bacillus pumilus SAFR-032 5622161 YP_001488083.1 CDS BPUM_2868 NC_009848.1 2867749 2868225 D YuiD; acid phosphatase/vanadium-dependent haloperoxidase 2867749..2868225 Bacillus pumilus SAFR-032 5622162 YP_001488084.1 CDS BPUM_2869 NC_009848.1 2868269 2868913 R YuiC; lipoprotein complement(2868269..2868913) Bacillus pumilus SAFR-032 5622163 YP_001488085.1 CDS BPUM_2870 NC_009848.1 2869014 2869334 R YuiB; hypothetical protein complement(2869014..2869334) Bacillus pumilus SAFR-032 5622164 YP_001488086.1 CDS BPUM_2871 NC_009848.1 2869416 2869643 R YuiA; hypothetical protein complement(2869416..2869643) Bacillus pumilus SAFR-032 5622165 YP_001488087.1 CDS BPUM_2872 NC_009848.1 2869672 2870883 R NADH dehydrogenase complement(2869672..2870883) Bacillus pumilus SAFR-032 5622166 YP_001488088.1 CDS BPUM_2873 NC_009848.1 2871280 2872278 D YumC; ferredoxin--NAD(+) reductase 2871280..2872278 Bacillus pumilus SAFR-032 5622167 YP_001488089.1 CDS BPUM_2874 NC_009848.1 2872325 2872531 R hypothetical protein complement(2872325..2872531) Bacillus pumilus SAFR-032 5622168 YP_001488090.1 CDS BPUM_2875 NC_009848.1 2872727 2873143 D hypothetical protein 2872727..2873143 Bacillus pumilus SAFR-032 5622169 YP_001488091.1 CDS BPUM_2876 NC_009848.1 2873264 2873626 R iron sulfur assembly protein complement(2873264..2873626) Bacillus pumilus SAFR-032 5622170 YP_001488092.1 CDS dapF NC_009848.1 2873700 2874554 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(2873700..2874554) Bacillus pumilus SAFR-032 5622171 YP_001488093.1 CDS BPUM_2878 NC_009848.1 2874573 2874737 D hypothetical protein 2874573..2874737 Bacillus pumilus SAFR-032 5622172 YP_001488094.1 CDS BPUM_2879 NC_009848.1 2874825 2875061 R YuzB; hypothetical protein complement(2874825..2875061) Bacillus pumilus SAFR-032 5622173 YP_001488095.1 CDS BPUM_2880 NC_009848.1 2875063 2875230 D hypothetical protein 2875063..2875230 Bacillus pumilus SAFR-032 5622174 YP_001488096.1 CDS BPUM_2881 NC_009848.1 2875317 2876384 D YutJ; NADH dehydrogenase 2875317..2876384 Bacillus pumilus SAFR-032 5622175 YP_001488097.1 CDS BPUM_2882 NC_009848.1 2876434 2876664 R hypothetical protein complement(2876434..2876664) Bacillus pumilus SAFR-032 5622176 YP_001488098.1 CDS BPUM_2883 NC_009848.1 2876765 2877094 R YuzD; hypothetical protein complement(2876765..2877094) Bacillus pumilus SAFR-032 5622177 YP_001488099.1 CDS BPUM_2884 NC_009848.1 2877279 2877515 D YutI; iron-sulfur assembly protein 2877279..2877515 Bacillus pumilus SAFR-032 5622178 YP_001488100.1 CDS BPUM_2885 NC_009848.1 2877559 2879529 R Dipeptidyl aminopeptidase/acylaminoacyl-peptidase Dap2; peptidase complement(2877559..2879529) Bacillus pumilus SAFR-032 5622179 YP_001488101.1 CDS thrB NC_009848.1 2879833 2880765 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(2879833..2880765) Bacillus pumilus SAFR-032 5622180 YP_001488102.1 CDS thrC1 NC_009848.1 2880762 2881823 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(2880762..2881823) Bacillus pumilus SAFR-032 5622181 YP_001488103.1 CDS thrA NC_009848.1 2881823 2883124 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(2881823..2883124) Bacillus pumilus SAFR-032 5622182 YP_001488104.1 CDS BPUM_2889 NC_009848.1 2883333 2884316 R D-isomer specific 2-hydroxyacid dehydrogenase complement(2883333..2884316) Bacillus pumilus SAFR-032 5622183 YP_001488105.1 CDS cotS NC_009848.1 2884402 2885430 R YutH; spore coat protein complement(2884402..2885430) Bacillus pumilus SAFR-032 5622184 YP_001488106.1 CDS pgpA NC_009848.1 2885545 2886045 D YutG; phosphatidylglycerophosphatase 2885545..2886045 Bacillus pumilus SAFR-032 5622185 YP_001488107.1 CDS BPUM_2892 NC_009848.1 2886087 2886857 R YutF; HAD family hydrolase complement(2886087..2886857) Bacillus pumilus SAFR-032 5622186 YP_001488108.1 CDS BPUM_2893 NC_009848.1 2886879 2887313 R YutE; hypothetical protein complement(2886879..2887313) Bacillus pumilus SAFR-032 5622187 YP_001488109.1 CDS BPUM_2894 NC_009848.1 2887333 2887608 R YutD; hypothetical protein complement(2887333..2887608) Bacillus pumilus SAFR-032 5622188 YP_001488110.1 CDS BPUM_2895 NC_009848.1 2887729 2888364 D YutC; lipoprotein 2887729..2888364 Bacillus pumilus SAFR-032 5622189 YP_001488111.1 CDS lipA NC_009848.1 2888404 2889300 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(2888404..2889300) Bacillus pumilus SAFR-032 5622190 YP_001488112.1 CDS BPUM_2897 NC_009848.1 2889591 2890571 D M23B subfamily peptidase 2889591..2890571 Bacillus pumilus SAFR-032 5622191 YP_001488113.1 CDS BPUM_2898 NC_009848.1 2890628 2890858 R hypothetical protein complement(2890628..2890858) Bacillus pumilus SAFR-032 5622192 YP_001488114.1 CDS yunB NC_009848.1 2890985 2891755 R sporulation protein YunB complement(2890985..2891755) Bacillus pumilus SAFR-032 5622193 YP_001488115.1 CDS BPUM_2900 NC_009848.1 2891825 2892130 R YunC; hypothetical protein complement(2891825..2892130) Bacillus pumilus SAFR-032 5622194 YP_001488116.1 CDS ushA NC_009848.1 2892198 2893571 R YunD; bifunctional 5'-nucleotidase/2',3'-cyclic phosphodiesterase complement(2892198..2893571) Bacillus pumilus SAFR-032 5622195 YP_001488117.1 CDS BPUM_2902 NC_009848.1 2893635 2894486 R YunF; hypothetical protein complement(2893635..2894486) Bacillus pumilus SAFR-032 5622196 YP_001488118.1 CDS BPUM_2903 NC_009848.1 2894805 2895965 D transcriptional regulator 2894805..2895965 Bacillus pumilus SAFR-032 5622197 YP_001488119.1 CDS BPUM_2904 NC_009848.1 2896030 2897190 D hypothetical protein 2896030..2897190 Bacillus pumilus SAFR-032 5622198 YP_001488120.1 CDS BPUM_2905 NC_009848.1 2897242 2898432 R major facilitator superfamily multidrug:cation symporter complement(2897242..2898432) Bacillus pumilus SAFR-032 5622199 YP_001488121.1 CDS BPUM_2906 NC_009848.1 2898593 2899846 R YurG; aminotransferase complement(2898593..2899846) Bacillus pumilus SAFR-032 5622200 YP_001488122.1 CDS end1 NC_009848.1 2899997 2900875 D deoxyribonuclease I 2899997..2900875 Bacillus pumilus SAFR-032 5622201 YP_001488123.1 CDS BPUM_2908 NC_009848.1 2900890 2901633 R hypothetical protein complement(2900890..2901633) Bacillus pumilus SAFR-032 5622202 YP_001488124.1 CDS BPUM_2909 NC_009848.1 2901656 2902693 R YfhA; iron ABC transporter membrane protein complement(2901656..2902693) Bacillus pumilus SAFR-032 5622203 YP_001488125.1 CDS BPUM_2910 NC_009848.1 2902686 2903702 R YfiZ; iron ABC transporter membrane protein complement(2902686..2903702) Bacillus pumilus SAFR-032 5622204 YP_001488126.1 CDS BPUM_2911 NC_009848.1 2903773 2904726 R YfiY; iron ABC transporter complement(2903773..2904726) Bacillus pumilus SAFR-032 5622205 YP_001488127.1 CDS BPUM_2912 NC_009848.1 2904866 2905774 R lysophospholipase complement(2904866..2905774) Bacillus pumilus SAFR-032 5622206 YP_001488128.1 CDS BPUM_2913 NC_009848.1 2905840 2906739 R hydrolase complement(2905840..2906739) Bacillus pumilus SAFR-032 5622207 YP_001488129.1 CDS psiE NC_009848.1 2907047 2907475 R phosphate-starvation-inducible protein PsiE complement(2907047..2907475) Bacillus pumilus SAFR-032 5622208 YP_001488130.1 CDS BPUM_2915 NC_009848.1 2907513 2908820 R YrkQ; sensor histidine kinase complement(2907513..2908820) Bacillus pumilus SAFR-032 5622209 YP_001488131.1 CDS BPUM_2916 NC_009848.1 2908807 2909502 R YrkP; response regulator complement(2908807..2909502) Bacillus pumilus SAFR-032 5622210 YP_001488132.1 CDS BPUM_2917 NC_009848.1 2909601 2909699 D hypothetical protein 2909601..2909699 Bacillus pumilus SAFR-032 5622211 YP_001488133.1 CDS BPUM_2918 NC_009848.1 2909755 2910963 D YrkO; hypothetical protein 2909755..2910963 Bacillus pumilus SAFR-032 5622212 YP_001488134.1 CDS BPUM_2919 NC_009848.1 2911073 2913076 R hypothetical protein complement(2911073..2913076) Bacillus pumilus SAFR-032 5622213 YP_001488135.1 CDS BPUM_2921 NC_009848.1 2914129 2915061 R hypothetical protein complement(2914129..2915061) Bacillus pumilus SAFR-032 5622215 YP_001488136.1 CDS acpH NC_009848.1 2915146 2915796 D [acyl-carrier-protein] phosphodiesterase 2915146..2915796 Bacillus pumilus SAFR-032 5622216 YP_001488137.1 CDS sufB NC_009848.1 2915861 2917258 R FeS cluster assembly protein; ABC transporter ATP-binding protein complement(2915861..2917258) Bacillus pumilus SAFR-032 5622217 YP_001488138.1 CDS nifU NC_009848.1 2917276 2917722 R Fe-S cluster assembly protein NifU complement(2917276..2917722) Bacillus pumilus SAFR-032 5622218 YP_001488139.1 CDS csd NC_009848.1 2917712 2918932 R cysteine desulfurase complement(2917712..2918932) Bacillus pumilus SAFR-032 5622219 YP_001488140.1 CDS sufD NC_009848.1 2918932 2920245 R FeS cluster assembly protein YurX; iron ABC transporter membrane protein complement(2918932..2920245) Bacillus pumilus SAFR-032 5622220 YP_001488141.1 CDS sufC NC_009848.1 2920264 2921049 R FeS cluster assembly protein YurY; iron ABC transporter ATP-binding protein complement(2920264..2921049) Bacillus pumilus SAFR-032 5622221 YP_001488142.1 CDS BPUM_2928 NC_009848.1 2921261 2921428 R hypothetical protein complement(2921261..2921428) Bacillus pumilus SAFR-032 5622222 YP_001488143.1 CDS BPUM_2929 NC_009848.1 2921614 2921982 R YurZ; carboxymuconolactone decarboxylase complement(2921614..2921982) Bacillus pumilus SAFR-032 5622223 YP_001488144.1 CDS BPUM_2930 NC_009848.1 2922087 2922908 R YusA; ABC transporter ATP-binding protein complement(2922087..2922908) Bacillus pumilus SAFR-032 5622224 YP_001488145.1 CDS BPUM_2931 NC_009848.1 2922923 2923591 R YusB; ABC transporter ATP-binding protein complement(2922923..2923591) Bacillus pumilus SAFR-032 5622225 YP_001488146.1 CDS BPUM_2932 NC_009848.1 2923584 2924609 R YusC; ABC transporter ATP-binding protein complement(2923584..2924609) Bacillus pumilus SAFR-032 5622226 YP_001488147.1 CDS BPUM_2933 NC_009848.1 2924645 2924797 D hypothetical protein 2924645..2924797 Bacillus pumilus SAFR-032 5622227 YP_001488148.1 CDS BPUM_2934 NC_009848.1 2924975 2925316 R YusD; hypothetical protein complement(2924975..2925316) Bacillus pumilus SAFR-032 5622228 YP_001488149.1 CDS BPUM_2935 NC_009848.1 2925437 2925739 R YusE; thioredoxin complement(2925437..2925739) Bacillus pumilus SAFR-032 5622229 YP_001488150.1 CDS BPUM_2936 NC_009848.1 2925752 2926105 R TOPRIM domain-containing protein complement(2925752..2926105) Bacillus pumilus SAFR-032 5622230 YP_001488151.1 CDS BPUM_2937 NC_009848.1 2926225 2926470 R YusG; hypothetical protein complement(2926225..2926470) Bacillus pumilus SAFR-032 5622231 YP_001488152.1 CDS gcvH NC_009848.1 2926506 2926889 R glycine cleavage system protein H complement(2926506..2926889) Bacillus pumilus SAFR-032 5622232 YP_001488153.1 CDS arsC NC_009848.1 2926956 2927315 R YusI; arsenate reductase (glutaredoxin) complement(2926956..2927315) Bacillus pumilus SAFR-032 5622233 YP_001488154.1 CDS BPUM_2940 NC_009848.1 2927485 2929266 R YusJ; acyl-CoA dehydrogenase complement(2927485..2929266) Bacillus pumilus SAFR-032 5622234 YP_001488155.1 CDS BPUM_2941 NC_009848.1 2929281 2930456 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(2929281..2930456) Bacillus pumilus SAFR-032 5622235 YP_001488156.1 CDS BPUM_2942 NC_009848.1 2930469 2932856 R YusL; 3-hydroxyacyl-CoA dehydrogenase complement(2930469..2932856) Bacillus pumilus SAFR-032 5622236 YP_001488157.1 CDS BPUM_2943 NC_009848.1 2933056 2933193 D hypothetical protein 2933056..2933193 Bacillus pumilus SAFR-032 5622237 YP_001488158.1 CDS BPUM_2944 NC_009848.1 2933223 2933471 D hypothetical protein 2933223..2933471 Bacillus pumilus SAFR-032 5622238 YP_001488159.1 CDS BPUM_2945 NC_009848.1 2933484 2933831 D YusN; hypothetical protein 2933484..2933831 Bacillus pumilus SAFR-032 5622239 YP_001488160.1 CDS BPUM_2946 NC_009848.1 2934035 2934898 D hypothetical protein 2934035..2934898 Bacillus pumilus SAFR-032 5622240 YP_001488161.1 CDS BPUM_2947 NC_009848.1 2934917 2935180 D hypothetical protein 2934917..2935180 Bacillus pumilus SAFR-032 5622241 YP_001488162.1 CDS BPUM_2948 NC_009848.1 2935225 2935479 R YusU; hypothetical protein complement(2935225..2935479) Bacillus pumilus SAFR-032 5622242 YP_001488163.1 CDS BPUM_2949 NC_009848.1 2935552 2936382 R YusV; iron ABC transporter complement(2935552..2936382) Bacillus pumilus SAFR-032 5622243 YP_001488164.1 CDS BPUM_2950 NC_009848.1 2936531 2936977 R YusW; hypothetical protein complement(2936531..2936977) Bacillus pumilus SAFR-032 5622244 YP_001488165.1 CDS BPUM_2951 NC_009848.1 2937092 2937934 D YusZ; short chain dehydrogenase 2937092..2937934 Bacillus pumilus SAFR-032 5622245 YP_001488166.1 CDS BPUM_2952 NC_009848.1 2937981 2939351 R YvtA; peptidase complement(2937981..2939351) Bacillus pumilus SAFR-032 5622246 YP_001488167.1 CDS cssR NC_009848.1 2939688 2940365 D response regulator 2939688..2940365 Bacillus pumilus SAFR-032 5622247 YP_001488168.1 CDS cssS NC_009848.1 2940362 2941693 D sensor histidine kinase 2940362..2941693 Bacillus pumilus SAFR-032 5622248 YP_001488169.1 CDS BPUM_2955 NC_009848.1 2941714 2941878 R hypothetical protein complement(2941714..2941878) Bacillus pumilus SAFR-032 5622249 YP_001488170.1 CDS BPUM_2956 NC_009848.1 2942071 2942949 D YuxN; TetR family transcriptional regulator 2942071..2942949 Bacillus pumilus SAFR-032 5622250 YP_001488171.1 CDS fumC NC_009848.1 2943029 2944423 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(2943029..2944423) Bacillus pumilus SAFR-032 5622251 YP_001488172.1 CDS BPUM_2958 NC_009848.1 2944513 2944680 R hypothetical protein complement(2944513..2944680) Bacillus pumilus SAFR-032 5622252 YP_001488173.1 CDS gerAA NC_009848.1 2944795 2946219 D spore germination protein AA 2944795..2946219 Bacillus pumilus SAFR-032 5622253 YP_001488174.1 CDS gerAB NC_009848.1 2946206 2947300 D spore germination protein AB 2946206..2947300 Bacillus pumilus SAFR-032 5622254 YP_001488175.1 CDS gerAC NC_009848.1 2947297 2948418 D spore germination protein AC 2947297..2948418 Bacillus pumilus SAFR-032 5622255 YP_001488176.1 CDS BPUM_2962 NC_009848.1 2948456 2948824 D hypothetical protein 2948456..2948824 Bacillus pumilus SAFR-032 5622256 YP_001488177.1 CDS BPUM_2963 NC_009848.1 2948872 2949507 R YvqC; response regulator complement(2948872..2949507) Bacillus pumilus SAFR-032 5622257 YP_001488178.1 CDS BPUM_2964 NC_009848.1 2949504 2950568 R YvqE; sensor histidine kinase complement(2949504..2950568) Bacillus pumilus SAFR-032 5622258 YP_001488179.1 CDS BPUM_2965 NC_009848.1 2950565 2951290 R YvqF; hypothetical protein complement(2950565..2951290) Bacillus pumilus SAFR-032 5622259 YP_001488180.1 CDS BPUM_2966 NC_009848.1 2951360 2952229 R YvqG; hypothetical protein complement(2951360..2952229) Bacillus pumilus SAFR-032 5622260 YP_001488181.1 CDS BPUM_2967 NC_009848.1 2952341 2953006 R YvqH; bacteriophage shock protein A complement(2952341..2953006) Bacillus pumilus SAFR-032 5622261 YP_001488182.1 CDS BPUM_2968 NC_009848.1 2953022 2953414 R YvqI; hypothetical protein complement(2953022..2953414) Bacillus pumilus SAFR-032 5622262 YP_001488183.1 CDS BPUM_2969 NC_009848.1 2953749 2954318 R YvqK; cob(I)yrinic acid a,c-diamide adenosyltransferase complement(2953749..2954318) Bacillus pumilus SAFR-032 5622263 YP_001488184.1 CDS BPUM_2970 NC_009848.1 2954367 2954489 D hypothetical protein 2954367..2954489 Bacillus pumilus SAFR-032 5622264 YP_001488185.1 CDS BPUM_2971 NC_009848.1 2954508 2955254 D 3-oxoacyl-ACP reductase 2954508..2955254 Bacillus pumilus SAFR-032 5622265 YP_001488186.1 CDS pdxA NC_009848.1 2955272 2956297 R 4-hydroxythreonine-4-phosphate dehydrogenase complement(2955272..2956297) Bacillus pumilus SAFR-032 5622266 YP_001488187.1 CDS BPUM_2973 NC_009848.1 2956273 2957616 R hypothetical protein complement(2956273..2957616) Bacillus pumilus SAFR-032 5622267 YP_001488188.1 CDS BPUM_2974 NC_009848.1 2957642 2959423 R possible sigma-L-dependent transcriptional regulator; transcriptional regulator complement(2957642..2959423) Bacillus pumilus SAFR-032 5622268 YP_001488189.1 CDS BPUM_2975 NC_009848.1 2959570 2960745 R hypothetical protein complement(2959570..2960745) Bacillus pumilus SAFR-032 5622269 YP_001488190.1 CDS BPUM_2976 NC_009848.1 2960742 2962148 R SSS family solute/sodium (Na+) symporter complement(2960742..2962148) Bacillus pumilus SAFR-032 5622270 YP_001488191.1 CDS BPUM_2977 NC_009848.1 2962222 2963394 R alcohol dehydrogenase complement(2962222..2963394) Bacillus pumilus SAFR-032 5622271 YP_001488192.1 CDS dapA3 NC_009848.1 2963402 2964301 R dihydrodipicolinate synthase complement(2963402..2964301) Bacillus pumilus SAFR-032 5622272 YP_001488193.1 CDS BPUM_2979 NC_009848.1 2964483 2965766 R YvrA; iron ABC transporter ATP-binding protein complement(2964483..2965766) Bacillus pumilus SAFR-032 5622273 YP_001488194.1 CDS BPUM_2980 NC_009848.1 2965763 2966821 R YvrB; iron ABC transporter membrane protein complement(2965763..2966821) Bacillus pumilus SAFR-032 5622274 YP_001488195.1 CDS BPUM_2981 NC_009848.1 2966787 2967737 R YvrC; iron ABC transporter binding protein complement(2966787..2967737) Bacillus pumilus SAFR-032 5622275 YP_001488196.1 CDS BPUM_2982 NC_009848.1 2967814 2967906 R hypothetical protein complement(2967814..2967906) Bacillus pumilus SAFR-032 5622276 YP_001488197.1 CDS BPUM_2983 NC_009848.1 2967912 2969303 R glycoside hydrolase complement(2967912..2969303) Bacillus pumilus SAFR-032 5622277 YP_001488198.1 CDS uxaA NC_009848.1 2969324 2970817 R mannonate dehydratase complement(2969324..2970817) Bacillus pumilus SAFR-032 5622278 YP_001488199.1 CDS uxaB NC_009848.1 2970814 2972271 R catalyzes the formation of D-tagaturonate from D-altronate; altronate oxidoreductase complement(2970814..2972271) Bacillus pumilus SAFR-032 5622279 YP_001488200.1 CDS BPUM_2986 NC_009848.1 2972331 2973341 R LacI family transcriptional regulator complement(2972331..2973341) Bacillus pumilus SAFR-032 5622280 YP_001488201.1 CDS uxaC NC_009848.1 2973410 2974846 R catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase complement(2973410..2974846) Bacillus pumilus SAFR-032 5622281 YP_001488202.1 CDS BPUM_2988 NC_009848.1 2974983 2976737 R YvrG; sensor histidine kinase complement(2974983..2976737) Bacillus pumilus SAFR-032 5622282 YP_001488203.1 CDS BPUM_2989 NC_009848.1 2976741 2977463 R YvrH; response regulator complement(2976741..2977463) Bacillus pumilus SAFR-032 5622283 YP_001488204.1 CDS fhuC NC_009848.1 2977640 2978455 R ferrichrome ABC transporter complement(2977640..2978455) Bacillus pumilus SAFR-032 5622284 YP_001488205.1 CDS fhuG NC_009848.1 2978475 2979497 R ferrichrome ABC transporter membrane protein complement(2978475..2979497) Bacillus pumilus SAFR-032 5622285 YP_001488206.1 CDS fhuB NC_009848.1 2979498 2980550 R ferrichrome ABC transporter membrane protein complement(2979498..2980550) Bacillus pumilus SAFR-032 5622286 YP_001488207.1 CDS BPUM_2993 NC_009848.1 2980625 2980702 R hypothetical protein complement(2980625..2980702) Bacillus pumilus SAFR-032 5622287 YP_001488208.1 CDS BPUM_2994 NC_009848.1 2980810 2981748 D ferrichrome ABC transporter 2980810..2981748 Bacillus pumilus SAFR-032 5622288 YP_001488209.1 CDS BPUM_2995 NC_009848.1 2981784 2983190 R YvsH; APC family amino acid-polyamine-organocation transporter complement(2981784..2983190) Bacillus pumilus SAFR-032 5622289 YP_001488210.1 CDS BPUM_2996 NC_009848.1 2983322 2983522 R hypothetical protein complement(2983322..2983522) Bacillus pumilus SAFR-032 5622290 YP_001488211.1 CDS sspJ NC_009848.1 2983680 2983823 R small acid-soluble spore protein J complement(2983680..2983823) Bacillus pumilus SAFR-032 5622291 YP_001488212.1 CDS BPUM_2998 NC_009848.1 2983906 2984334 R MarR family transcriptional regulator complement(2983906..2984334) Bacillus pumilus SAFR-032 5622292 YP_001488213.1 CDS BPUM_2999 NC_009848.1 2984380 2984526 R hypothetical protein complement(2984380..2984526) Bacillus pumilus SAFR-032 5622293 YP_001488214.1 CDS BPUM_3000 NC_009848.1 2984507 2985007 D YvsG; hypothetical protein 2984507..2985007 Bacillus pumilus SAFR-032 5622294 YP_001488215.1 CDS BPUM_3001 NC_009848.1 2985124 2986974 D YvgJ; sulfatase 2985124..2986974 Bacillus pumilus SAFR-032 5622295 YP_001488216.1 CDS BPUM_3002 NC_009848.1 2987108 2987902 D YvgL; molybdenum ABC transporter ATP-binding protein 2987108..2987902 Bacillus pumilus SAFR-032 5622296 YP_001488217.1 CDS BPUM_3003 NC_009848.1 2987902 2988564 D molybdenum ABC transporter membrane protein 2987902..2988564 Bacillus pumilus SAFR-032 5622297 YP_001488218.1 CDS BPUM_3004 NC_009848.1 2988605 2989450 R YvgN; aldo/keto reductase complement(2988605..2989450) Bacillus pumilus SAFR-032 5622298 YP_001488219.1 CDS BPUM_3005 NC_009848.1 2989520 2990389 R ROK family protein complement(2989520..2990389) Bacillus pumilus SAFR-032 5622299 YP_001488220.1 CDS BPUM_3006 NC_009848.1 2990453 2992468 R YvgP; CPA1 family monovalent cation:proton (H+) antiporter-1 complement(2990453..2992468) Bacillus pumilus SAFR-032 5622300 YP_001488221.1 CDS BPUM_3007 NC_009848.1 2992787 2993398 R YvgT; hypothetical protein complement(2992787..2993398) Bacillus pumilus SAFR-032 5622301 YP_001488222.1 CDS bdbC NC_009848.1 2993545 2993958 R disulfide dehydrogenase C complement(2993545..2993958) Bacillus pumilus SAFR-032 5622302 YP_001488223.1 CDS bdbD NC_009848.1 2993955 2994641 R disulfide dehydrogenase D complement(2993955..2994641) Bacillus pumilus SAFR-032 5622303 YP_001488224.1 CDS BPUM_3010 NC_009848.1 2994786 2996885 R P-ATPase superfamily P-type ATPase metal transporter complement(2994786..2996885) Bacillus pumilus SAFR-032 5622304 YP_001488225.1 CDS mntB NC_009848.1 2997311 2998054 D metal cation ABC transporter ATP-binding protein 2997311..2998054 Bacillus pumilus SAFR-032 5622305 YP_001488226.1 CDS mntD NC_009848.1 2998054 2998926 D metal cation ABC transporter membrane protein 2998054..2998926 Bacillus pumilus SAFR-032 5622306 YP_001488227.1 CDS mntA NC_009848.1 2998940 2999878 D metal cation ABC transporter ATP-binding protein 2998940..2999878 Bacillus pumilus SAFR-032 5622307 YP_001488228.1 CDS BPUM_3014 NC_009848.1 2999913 3000461 R YmcC; hypothetical protein complement(2999913..3000461) Bacillus pumilus SAFR-032 5622308 YP_001488229.1 CDS pksA NC_009848.1 3000551 3001159 D transcriptional regulator 3000551..3001159 Bacillus pumilus SAFR-032 5622309 YP_001488230.1 CDS BPUM_3016 NC_009848.1 3001175 3002107 R response regulator complement(3001175..3002107) Bacillus pumilus SAFR-032 5622310 YP_001488231.1 CDS BPUM_3017 NC_009848.1 3002104 3003420 R sensor histidine kinase complement(3002104..3003420) Bacillus pumilus SAFR-032 5622311 YP_001488232.1 CDS ansB1 NC_009848.1 3003537 3004982 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(3003537..3004982) Bacillus pumilus SAFR-032 5622312 YP_001488233.1 CDS BPUM_3019 NC_009848.1 3004999 3006276 R DAACS family dicarboxylate/amino acid:sodium or proton symporter complement(3004999..3006276) Bacillus pumilus SAFR-032 5622313 YP_001488234.1 CDS BPUM_3020 NC_009848.1 3006453 3006587 R hypothetical protein complement(3006453..3006587) Bacillus pumilus SAFR-032 5622314 YP_001488235.1 CDS BPUM_3021 NC_009848.1 3006584 3009019 R P-ATPase superfamily P-type ATPase heavy metal transporter complement(3006584..3009019) Bacillus pumilus SAFR-032 5622315 YP_001488236.1 CDS merP NC_009848.1 3009296 3009502 R CopZ; MerTP family mercury (Hg2+) permease, binding protein MerP complement(3009296..3009502) Bacillus pumilus SAFR-032 5622316 YP_001488237.1 CDS BPUM_3023 NC_009848.1 3009575 3009880 R YvgZ; hypothetical protein complement(3009575..3009880) Bacillus pumilus SAFR-032 5622317 YP_001488238.1 CDS BPUM_3024 NC_009848.1 3009982 3010437 R YybP; hypothetical protein complement(3009982..3010437) Bacillus pumilus SAFR-032 5622318 YP_001488239.1 CDS BPUM_3025 NC_009848.1 3010444 3010596 R hypothetical protein complement(3010444..3010596) Bacillus pumilus SAFR-032 5622319 YP_001488240.1 CDS BPUM_3026 NC_009848.1 3010716 3012305 R GGDEF domain containing protein; diguanylate cyclase complement(3010716..3012305) Bacillus pumilus SAFR-032 5622320 YP_001488241.1 CDS BPUM_3027 NC_009848.1 3012550 3012789 D hypothetical protein 3012550..3012789 Bacillus pumilus SAFR-032 5622321 YP_001488242.1 CDS BPUM_3028 NC_009848.1 3012927 3013478 R hypothetical protein complement(3012927..3013478) Bacillus pumilus SAFR-032 5622322 YP_001488243.1 CDS BPUM_3029 NC_009848.1 3014188 3015018 D hypothetical protein 3014188..3015018 Bacillus pumilus SAFR-032 5622323 YP_001488244.1 CDS smpB NC_009848.1 3015643 3016113 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(3015643..3016113) Bacillus pumilus SAFR-032 5622324 YP_001488245.1 CDS rnr NC_009848.1 3016253 3018595 R ribonuclease R complement(3016253..3018595) Bacillus pumilus SAFR-032 5622325 YP_001488246.1 CDS bioH NC_009848.1 3018615 3019361 R carboxylesterase complement(3018615..3019361) Bacillus pumilus SAFR-032 5622326 YP_001488247.1 CDS secG NC_009848.1 3019486 3019719 R preprotein translocase subunit SecG complement(3019486..3019719) Bacillus pumilus SAFR-032 5622327 YP_001488248.1 CDS BPUM_3034 NC_009848.1 3019714 3019932 D hypothetical protein 3019714..3019932 Bacillus pumilus SAFR-032 5622328 YP_001488249.1 CDS abhA NC_009848.1 3019906 3020196 R transcriptional regulator complement(3019906..3020196) Bacillus pumilus SAFR-032 5622329 YP_001488250.1 CDS yvzC NC_009848.1 3020223 3020456 R transcriptional regulator complement(3020223..3020456) Bacillus pumilus SAFR-032 5622330 YP_001488251.1 CDS BPUM_3037 NC_009848.1 3020610 3021014 D transcriptional regulator 3020610..3021014 Bacillus pumilus SAFR-032 5622331 YP_001488252.1 CDS BPUM_3038 NC_009848.1 3021145 3021543 D hypothetical protein 3021145..3021543 Bacillus pumilus SAFR-032 5622332 YP_001488253.1 CDS BPUM_3039 NC_009848.1 3021626 3021946 D hypothetical protein 3021626..3021946 Bacillus pumilus SAFR-032 5622333 YP_001488254.1 CDS opuCD NC_009848.1 3022027 3022716 R glycine betaine/carnitine/choline ABC transporter membrane protein complement(3022027..3022716) Bacillus pumilus SAFR-032 5622334 YP_001488255.1 CDS opuCC NC_009848.1 3022738 3023655 R glycine betaine/carnitine/choline ABC transporter binding protein complement(3022738..3023655) Bacillus pumilus SAFR-032 5622335 YP_001488256.1 CDS opuCB NC_009848.1 3023669 3024322 R glycine betaine/carnitine/choline ABC transporter membrane protein complement(3023669..3024322) Bacillus pumilus SAFR-032 5622336 YP_001488257.1 CDS opuCA NC_009848.1 3024336 3025484 R glycine betaine/carnitine/choline ABC transporter ATP-binding protein complement(3024336..3025484) Bacillus pumilus SAFR-032 5622337 YP_001488258.1 CDS BPUM_3044 NC_009848.1 3025754 3026290 D transcriptional regulator 3025754..3026290 Bacillus pumilus SAFR-032 5622338 YP_001488259.1 CDS BPUM_3045 NC_009848.1 3026346 3026978 R hypothetical protein complement(3026346..3026978) Bacillus pumilus SAFR-032 5622339 YP_001488260.1 CDS BPUM_3046 NC_009848.1 3027096 3027560 D hypothetical protein 3027096..3027560 Bacillus pumilus SAFR-032 5622340 YP_001488261.1 CDS yvbK NC_009848.1 3027576 3028040 D GNAT family acetyltransferase 3027576..3028040 Bacillus pumilus SAFR-032 5622341 YP_001488262.1 CDS BPUM_3048 NC_009848.1 3028060 3028341 R hypothetical protein complement(3028060..3028341) Bacillus pumilus SAFR-032 5622342 YP_001488263.1 CDS BPUM_3049 NC_009848.1 3028338 3028706 R hypothetical protein complement(3028338..3028706) Bacillus pumilus SAFR-032 5622343 YP_001488264.1 CDS BPUM_3050 NC_009848.1 3028703 3030100 R hypothetical protein complement(3028703..3030100) Bacillus pumilus SAFR-032 5622344 YP_001488265.1 CDS BPUM_3051 NC_009848.1 3030072 3030839 R ABC transporter ATP-binding protein complement(3030072..3030839) Bacillus pumilus SAFR-032 5622345 YP_001488266.1 CDS BPUM_3052 NC_009848.1 3030898 3031167 R hypothetical protein complement(3030898..3031167) Bacillus pumilus SAFR-032 5622346 YP_001488267.1 CDS eno NC_009848.1 3031425 3032717 R enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase complement(3031425..3032717) Bacillus pumilus SAFR-032 5622347 YP_001488268.1 CDS gpmI NC_009848.1 3032747 3034282 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(3032747..3034282) Bacillus pumilus SAFR-032 5622348 YP_001488269.1 CDS tpiA NC_009848.1 3034275 3035036 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(3034275..3035036) Bacillus pumilus SAFR-032 5622349 YP_001488270.1 CDS pgk NC_009848.1 3035067 3036251 R Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase complement(3035067..3036251) Bacillus pumilus SAFR-032 5622350 YP_001488271.1 CDS gapA NC_009848.1 3036465 3037472 R glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) complement(3036465..3037472) Bacillus pumilus SAFR-032 5622351 YP_001488272.1 CDS cggR NC_009848.1 3037504 3038541 R transcriptional regulator complement(3037504..3038541) Bacillus pumilus SAFR-032 5622352 YP_001488273.1 CDS rocC NC_009848.1 3038855 3040270 R APC family amino acid-polyamine-organocation transporter complement(3038855..3040270) Bacillus pumilus SAFR-032 5622353 YP_001488274.1 CDS rocD NC_009848.1 3040377 3041570 R ornithine--oxo-acid transaminase complement(3040377..3041570) Bacillus pumilus SAFR-032 5622354 YP_001488275.1 CDS BPUM_3061 NC_009848.1 3041780 3043222 D transcriptional regulator 3041780..3043222 Bacillus pumilus SAFR-032 5622355 YP_001488276.1 CDS BPUM_3062 NC_009848.1 3043250 3043987 R YvfI; GntR family transcriptional regulator complement(3043250..3043987) Bacillus pumilus SAFR-032 5622356 YP_001488277.1 CDS sigL NC_009848.1 3044159 3045463 R DNA-directed RNA polymerase sigma subunit SigL complement(3044159..3045463) Bacillus pumilus SAFR-032 5622357 YP_001488278.1 CDS BPUM_3064 NC_009848.1 3045534 3045749 D YvfG; hypothetical protein 3045534..3045749 Bacillus pumilus SAFR-032 5622358 YP_001488279.1 CDS BPUM_3065 NC_009848.1 3045770 3047095 R MATE family multi antimicrobial extrusion protein complement(3045770..3047095) Bacillus pumilus SAFR-032 5622359 YP_001488280.1 CDS BPUM_3066 NC_009848.1 3047158 3047973 R oligopeptide ABC transporter ATP-binding protein complement(3047158..3047973) Bacillus pumilus SAFR-032 5622360 YP_001488281.1 CDS appDB NC_009848.1 3047987 3048829 R oligopeptide ABC transporter ATP-binding protein complement(3047987..3048829) Bacillus pumilus SAFR-032 5622361 YP_001488282.1 CDS appCB NC_009848.1 3048807 3049640 R oligopeptide ABC transporter membrane protein complement(3048807..3049640) Bacillus pumilus SAFR-032 5622362 YP_001488283.1 CDS appBB NC_009848.1 3049637 3050581 R oligopeptide ABC transporter membrane protein complement(3049637..3050581) Bacillus pumilus SAFR-032 5622363 YP_001488284.1 CDS appAB NC_009848.1 3050600 3052222 R oligopeptide ABC transporter substrate-binding protein complement(3050600..3052222) Bacillus pumilus SAFR-032 5622364 YP_001488285.1 CDS BPUM_3071 NC_009848.1 3052372 3053553 R polysaccharide biosynthesis protein YvfE; pyridoxal-phosphate-dependent aminotransferase complement(3052372..3053553) Bacillus pumilus SAFR-032 5622365 YP_001488286.1 CDS BPUM_3072 NC_009848.1 3053550 3054239 R YvfD; hypothetical protein complement(3053550..3054239) Bacillus pumilus SAFR-032 5622366 YP_001488287.1 CDS BPUM_3073 NC_009848.1 3054202 3054795 R YvfC; sugar transferase complement(3054202..3054795) Bacillus pumilus SAFR-032 5622367 YP_001488288.1 CDS BPUM_3074 NC_009848.1 3054816 3056330 R polysaccharide biosynthesis protein complement(3054816..3056330) Bacillus pumilus SAFR-032 5622368 YP_001488289.1 CDS BPUM_3075 NC_009848.1 3056359 3057381 R YveS; polysaccharide biosynthesis protein complement(3056359..3057381) Bacillus pumilus SAFR-032 5622369 YP_001488290.1 CDS BPUM_3076 NC_009848.1 3057393 3058415 R YveR; glycosyltransferase complement(3057393..3058415) Bacillus pumilus SAFR-032 5622370 YP_001488291.1 CDS BPUM_3077 NC_009848.1 3058443 3059546 R YveQ; hypothetical protein complement(3058443..3059546) Bacillus pumilus SAFR-032 5622371 YP_001488292.1 CDS BPUM_3078 NC_009848.1 3059561 3060691 R YveP; glycosyltransferase complement(3059561..3060691) Bacillus pumilus SAFR-032 5622372 YP_001488293.1 CDS BPUM_3079 NC_009848.1 3060684 3061529 R YveO; glycosyltransferase complement(3060684..3061529) Bacillus pumilus SAFR-032 5622373 YP_001488294.1 CDS BPUM_3080 NC_009848.1 3061526 3062665 R YveN; glycosyltransferase complement(3061526..3062665) Bacillus pumilus SAFR-032 5622374 YP_001488295.1 CDS BPUM_3081 NC_009848.1 3062631 3064505 R YveM; capsular polysaccharide biosynthesis protein complement(3062631..3064505) Bacillus pumilus SAFR-032 5622375 YP_001488296.1 CDS BPUM_3082 NC_009848.1 3064670 3065353 R YveL; capsular polysaccharide biosynthesis protein complement(3064670..3065353) Bacillus pumilus SAFR-032 5622376 YP_001488297.1 CDS BPUM_3083 NC_009848.1 3065343 3066074 R YveK; capsular polysaccharide biosynthesis protein complement(3065343..3066074) Bacillus pumilus SAFR-032 5622377 YP_001488298.1 CDS BPUM_3084 NC_009848.1 3066332 3066802 D transcriptional regulator 3066332..3066802 Bacillus pumilus SAFR-032 5622378 YP_001488299.1 CDS BPUM_3085 NC_009848.1 3066891 3067115 R holin complement(3066891..3067115) Bacillus pumilus SAFR-032 5622379 YP_001488300.1 CDS BPUM_3086 NC_009848.1 3067255 3068157 R ferrichrome ABC transporter complement(3067255..3068157) Bacillus pumilus SAFR-032 5622380 YP_001488301.1 CDS BPUM_3087 NC_009848.1 3068178 3069179 R ferrichrome ABC transporter membrane protein complement(3068178..3069179) Bacillus pumilus SAFR-032 5622381 YP_001488302.1 CDS BPUM_3088 NC_009848.1 3069176 3070204 R ferrichrome ABC transporter membrane protein complement(3069176..3070204) Bacillus pumilus SAFR-032 5622382 YP_001488303.1 CDS BPUM_3089 NC_009848.1 3070194 3070295 R hypothetical protein complement(3070194..3070295) Bacillus pumilus SAFR-032 5622383 YP_001488304.1 CDS BPUM_3090 NC_009848.1 3070514 3071923 D YjeA; polysaccharide deacetylase 3070514..3071923 Bacillus pumilus SAFR-032 5622384 YP_001488305.1 CDS BPUM_3091 NC_009848.1 3071938 3073527 R ABC transporter ATP-binding protein complement(3071938..3073527) Bacillus pumilus SAFR-032 5622385 YP_001488306.1 CDS BPUM_3092 NC_009848.1 3073830 3074600 R ABC transporter ATP-binding protein complement(3073830..3074600) Bacillus pumilus SAFR-032 5622386 YP_001488307.1 CDS BPUM_3093 NC_009848.1 3074594 3075409 R ABC transporter ATP-binding protein complement(3074594..3075409) Bacillus pumilus SAFR-032 5622387 YP_001488308.1 CDS BPUM_3094 NC_009848.1 3075372 3076262 R ABC transporter ATP-binding protein complement(3075372..3076262) Bacillus pumilus SAFR-032 5622388 YP_001488309.1 CDS BPUM_3095 NC_009848.1 3076265 3077194 R ABC transporter ATP-binding protein complement(3076265..3077194) Bacillus pumilus SAFR-032 5622389 YP_001488310.1 CDS BPUM_3096 NC_009848.1 3077210 3078841 R ABC transporter ATP-binding protein complement(3077210..3078841) Bacillus pumilus SAFR-032 5622390 YP_001488311.1 CDS BPUM_3097 NC_009848.1 3078965 3080134 R YdhE; glucuronosyltransferase complement(3078965..3080134) Bacillus pumilus SAFR-032 5622391 YP_001488312.1 CDS BPUM_3098 NC_009848.1 3080378 3080929 R hypothetical protein complement(3080378..3080929) Bacillus pumilus SAFR-032 5622392 YP_001488313.1 CDS BPUM_3099 NC_009848.1 3081030 3081212 D hypothetical protein 3081030..3081212 Bacillus pumilus SAFR-032 5622393 YP_001488314.1 CDS BPUM_3100 NC_009848.1 3081597 3081902 R hypothetical protein complement(3081597..3081902) Bacillus pumilus SAFR-032 5622395 YP_001488315.1 CDS BPUM_3101 NC_009848.1 3081872 3082090 R hypothetical protein complement(3081872..3082090) Bacillus pumilus SAFR-032 5622396 YP_001488316.1 CDS clpP NC_009848.1 3082130 3082726 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 3082130..3082726 Bacillus pumilus SAFR-032 5622397 YP_001488317.1 CDS BPUM_3103 NC_009848.1 3082786 3083379 R YvdD; lysine decarboxylase complement(3082786..3083379) Bacillus pumilus SAFR-032 5622398 YP_001488318.1 CDS mazG NC_009848.1 3083502 3083831 D YvdC; nucleotide pyrophosphohydrolase 3083502..3083831 Bacillus pumilus SAFR-032 5622399 YP_001488319.1 CDS BPUM_3105 NC_009848.1 3083860 3085482 R YvdB; SulP family sulfate permease complement(3083860..3085482) Bacillus pumilus SAFR-032 5622400 YP_001488320.1 CDS BPUM_3106 NC_009848.1 3085520 3086173 R YvdA; carbonate dehydratase complement(3085520..3086173) Bacillus pumilus SAFR-032 5622401 YP_001488321.1 CDS BPUM_3107 NC_009848.1 3086372 3086446 R hypothetical protein complement(3086372..3086446) Bacillus pumilus SAFR-032 5622402 YP_001488322.1 CDS BPUM_3108 NC_009848.1 3086655 3087626 D YvcT; gluconate 2-dehydrogenase 3086655..3087626 Bacillus pumilus SAFR-032 5622403 YP_001488323.1 CDS BPUM_3109 NC_009848.1 3087623 3087712 D hypothetical protein 3087623..3087712 Bacillus pumilus SAFR-032 5622404 YP_001488324.1 CDS BPUM_3110 NC_009848.1 3087817 3088305 D barnase; guanine-specific ribonuclease 3087817..3088305 Bacillus pumilus SAFR-032 5622405 YP_001488325.1 CDS BPUM_3111 NC_009848.1 3088352 3089098 R YvcN; N-hydroxyarylamine O-acetyltransferase complement(3088352..3089098) Bacillus pumilus SAFR-032 5622406 YP_001488326.1 CDS BPUM_3112 NC_009848.1 3089136 3089393 R phosphocarrier protein Chr complement(3089136..3089393) Bacillus pumilus SAFR-032 5622407 YP_001488327.1 CDS BPUM_3113 NC_009848.1 3089420 3090370 R YvcL; hypothetical protein complement(3089420..3090370) Bacillus pumilus SAFR-032 5622408 YP_001488328.1 CDS BPUM_3114 NC_009848.1 3090388 3091347 R YvcK; hypothetical protein complement(3090388..3091347) Bacillus pumilus SAFR-032 5622409 YP_001488329.1 CDS BPUM_3115 NC_009848.1 3091348 3092271 R YvcJ; hypothetical protein complement(3091348..3092271) Bacillus pumilus SAFR-032 5622410 YP_001488330.1 CDS BPUM_3116 NC_009848.1 3092275 3092739 R NUDIX family hydrolase complement(3092275..3092739) Bacillus pumilus SAFR-032 5622411 YP_001488331.1 CDS trxB NC_009848.1 3093097 3094047 R thioredoxin-disulfide reductase complement(3093097..3094047) Bacillus pumilus SAFR-032 5622412 YP_001488332.1 CDS BPUM_3118 NC_009848.1 3094102 3094233 D hypothetical protein 3094102..3094233 Bacillus pumilus SAFR-032 5622413 YP_001488333.1 CDS BPUM_3119 NC_009848.1 3094281 3095672 R YvcE; C40 family peptidase complement(3094281..3095672) Bacillus pumilus SAFR-032 5622414 YP_001488334.1 CDS BPUM_3120 NC_009848.1 3096036 3097493 R transcriptional regulator complement(3096036..3097493) Bacillus pumilus SAFR-032 5622415 YP_001488335.1 CDS hisI NC_009848.1 3097625 3098254 R catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase complement(3097625..3098254) Bacillus pumilus SAFR-032 5622416 YP_001488336.1 CDS hisF NC_009848.1 3098251 3099009 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(3098251..3099009) Bacillus pumilus SAFR-032 5622417 YP_001488337.1 CDS hisA NC_009848.1 3099006 3099743 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(3099006..3099743) Bacillus pumilus SAFR-032 5622418 YP_001488338.1 CDS hisH NC_009848.1 3099740 3100378 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(3099740..3100378) Bacillus pumilus SAFR-032 5622419 YP_001488339.1 CDS hisB NC_009848.1 3100378 3100962 R catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase complement(3100378..3100962) Bacillus pumilus SAFR-032 5622420 YP_001488340.1 CDS hisD NC_009848.1 3100959 3102248 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(3100959..3102248) Bacillus pumilus SAFR-032 5622421 YP_001488341.1 CDS hisG NC_009848.1 3102245 3102886 R short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit complement(3102245..3102886) Bacillus pumilus SAFR-032 5622422 YP_001488342.1 CDS hisZ NC_009848.1 3102879 3104054 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit complement(3102879..3104054) Bacillus pumilus SAFR-032 5622423 YP_001488343.1 CDS BPUM_3129 NC_009848.1 3104288 3105082 D hypothetical protein 3104288..3105082 Bacillus pumilus SAFR-032 5622424 YP_001488344.1 CDS BPUM_3130 NC_009848.1 3105143 3105781 R thioredoxin complement(3105143..3105781) Bacillus pumilus SAFR-032 5622425 YP_001488345.1 CDS BPUM_3131 NC_009848.1 3105826 3106467 R FMN reductase complement(3105826..3106467) Bacillus pumilus SAFR-032 5622426 YP_001488346.1 CDS BPUM_3132 NC_009848.1 3106553 3106981 R transcriptional regulator complement(3106553..3106981) Bacillus pumilus SAFR-032 5622427 YP_001488347.1 CDS BPUM_3133 NC_009848.1 3107051 3107569 R hypothetical protein complement(3107051..3107569) Bacillus pumilus SAFR-032 5622428 YP_001488348.1 CDS BPUM_3134 NC_009848.1 3107571 3108221 R hydrolyzes pyrophosphate formed during serine-46-phosphorylated HPr dephosphorylation; pyrophosphatase PpaX complement(3107571..3108221) Bacillus pumilus SAFR-032 5622429 YP_001488349.1 CDS BPUM_3135 NC_009848.1 3108218 3109162 R YvoD; hypothetical protein complement(3108218..3109162) Bacillus pumilus SAFR-032 5622430 YP_001488350.1 CDS lgt NC_009848.1 3109182 3110006 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(3109182..3110006) Bacillus pumilus SAFR-032 5622431 YP_001488351.1 CDS hprK NC_009848.1 3110018 3110950 R catalyzes the phosphorylation of the phosphocarrier protein HPr of the bacterial phosphotransferase system; HPr kinase/phosphorylase complement(3110018..3110950) Bacillus pumilus SAFR-032 5622432 YP_001488352.1 CDS nagA NC_009848.1 3111128 3112315 D N-acetylglucosamine-6-phosphate deacetylase 3111128..3112315 Bacillus pumilus SAFR-032 5622433 YP_001488353.1 CDS nagB NC_009848.1 3112315 3113040 D glucosamine-6-phosphate deaminase 3112315..3113040 Bacillus pumilus SAFR-032 5622434 YP_001488354.1 CDS BPUM_3140 NC_009848.1 3113065 3113790 D YvoA; transcriptional regulator 3113065..3113790 Bacillus pumilus SAFR-032 5622435 YP_001488355.1 CDS BPUM_3141 NC_009848.1 3113820 3117677 R YvnB; metallophosphoesterase complement(3113820..3117677) Bacillus pumilus SAFR-032 5622436 YP_001488356.1 CDS BPUM_3142 NC_009848.1 3117772 3118158 R YvlD; hypothetical protein complement(3117772..3118158) Bacillus pumilus SAFR-032 5622437 YP_001488357.1 CDS pspC NC_009848.1 3118159 3118353 R YvlC; bacteriophage shock protein C complement(3118159..3118353) Bacillus pumilus SAFR-032 5622438 YP_001488358.1 CDS BPUM_3144 NC_009848.1 3118360 3119451 R YvlB; hypothetical protein complement(3118360..3119451) Bacillus pumilus SAFR-032 5622439 YP_001488359.1 CDS BPUM_3145 NC_009848.1 3119463 3119798 R YvlA; hypothetical protein complement(3119463..3119798) Bacillus pumilus SAFR-032 5622440 YP_001488360.1 CDS BPUM_3146 NC_009848.1 3119996 3120226 D YkvN; hypothetical protein 3119996..3120226 Bacillus pumilus SAFR-032 5622441 YP_001488361.1 CDS uvrA NC_009848.1 3120456 3123332 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(3120456..3123332) Bacillus pumilus SAFR-032 5622442 YP_001488362.1 CDS uvrB NC_009848.1 3123340 3125325 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(3123340..3125325) Bacillus pumilus SAFR-032 5622443 YP_001488363.1 CDS BPUM_3149 NC_009848.1 3125437 3125601 R hypothetical protein complement(3125437..3125601) Bacillus pumilus SAFR-032 5622444 YP_001488364.1 CDS BPUM_3150 NC_009848.1 3125620 3125865 R hypothetical protein complement(3125620..3125865) Bacillus pumilus SAFR-032 5622445 YP_001488365.1 CDS ppsA NC_009848.1 3126150 3128681 D YvkC; pyruvate, water dikinase 3126150..3128681 Bacillus pumilus SAFR-032 5622446 YP_001488366.1 CDS BPUM_3152 NC_009848.1 3128762 3129334 D YvkB; TetR family transcriptional regulator 3128762..3129334 Bacillus pumilus SAFR-032 5622447 YP_001488367.1 CDS BPUM_3153 NC_009848.1 3129375 3130709 D YvkA; major facilitator superfamily transporter 3129375..3130709 Bacillus pumilus SAFR-032 5622448 YP_001488368.1 CDS BPUM_3154 NC_009848.1 3130986 3131969 D lipoprotein 3130986..3131969 Bacillus pumilus SAFR-032 5622449 YP_001488369.1 CDS BPUM_3155 NC_009848.1 3131966 3132652 D YclJ; response regulator 3131966..3132652 Bacillus pumilus SAFR-032 5622450 YP_001488370.1 CDS BPUM_3156 NC_009848.1 3132649 3134067 D sensor histidine kinase 3132649..3134067 Bacillus pumilus SAFR-032 5622451 YP_001488371.1 CDS BPUM_3157 NC_009848.1 3134211 3136334 D YkcB; glycosyltransferase 3134211..3136334 Bacillus pumilus SAFR-032 5622452 YP_001488372.1 CDS BPUM_3158 NC_009848.1 3136365 3137357 D YkcC; glycosyltransferase 3136365..3137357 Bacillus pumilus SAFR-032 5622453 YP_001488373.1 CDS BPUM_3159 NC_009848.1 3137404 3138753 R YvbW; APC family amino acid-polyamine-organocation transporter complement(3137404..3138753) Bacillus pumilus SAFR-032 5622454 YP_001488374.1 CDS BPUM_3160 NC_009848.1 3138933 3139061 R hypothetical protein complement(3138933..3139061) Bacillus pumilus SAFR-032 5622455 YP_001488375.1 CDS BPUM_3161 NC_009848.1 3139145 3139819 R YfkO; nitroreductase complement(3139145..3139819) Bacillus pumilus SAFR-032 5622456 YP_001488376.1 CDS BPUM_3162 NC_009848.1 3140051 3140416 D YdeP; hypothetical protein 3140051..3140416 Bacillus pumilus SAFR-032 5622457 YP_001488377.1 CDS BPUM_3163 NC_009848.1 3140426 3141613 R hypothetical protein complement(3140426..3141613) Bacillus pumilus SAFR-032 5622458 YP_001488378.1 CDS BPUM_3164 NC_009848.1 3141682 3142035 R possible swarming motility protein YvzD; hypothetical protein complement(3141682..3142035) Bacillus pumilus SAFR-032 5622459 YP_001488379.1 CDS BPUM_3165 NC_009848.1 3142023 3142136 D hypothetical protein 3142023..3142136 Bacillus pumilus SAFR-032 5622460 YP_001488380.1 CDS BPUM_3166 NC_009848.1 3142380 3143828 R YvjB; peptidase complement(3142380..3143828) Bacillus pumilus SAFR-032 5622461 YP_001488381.1 CDS BPUM_3167 NC_009848.1 3143982 3144722 D YdhB; hypothetical protein 3143982..3144722 Bacillus pumilus SAFR-032 5622462 YP_001488382.1 CDS BPUM_3168 NC_009848.1 3144773 3146038 R M23B subfamily peptidase complement(3144773..3146038) Bacillus pumilus SAFR-032 5622463 YP_001488383.1 CDS ftsX NC_009848.1 3146151 3147041 R cell division protein FtsX complement(3146151..3147041) Bacillus pumilus SAFR-032 5622464 YP_001488384.1 CDS ftsE NC_009848.1 3147034 3147720 R cell-division ATP-binding protein complement(3147034..3147720) Bacillus pumilus SAFR-032 5622465 YP_001488385.1 CDS BPUM_3171 NC_009848.1 3147796 3147951 D hypothetical protein 3147796..3147951 Bacillus pumilus SAFR-032 5622466 YP_001488386.1 CDS cccB NC_009848.1 3148101 3148430 R cytochrome c551 complement(3148101..3148430) Bacillus pumilus SAFR-032 5622467 YP_001488387.1 CDS BPUM_3173 NC_009848.1 3148479 3149327 R YvjA; hypothetical protein complement(3148479..3149327) Bacillus pumilus SAFR-032 5622468 YP_001488388.1 CDS BPUM_3174 NC_009848.1 3149429 3149539 R hypothetical protein complement(3149429..3149539) Bacillus pumilus SAFR-032 5622469 YP_001488389.1 CDS BPUM_3175 NC_009848.1 3149517 3150251 D hypothetical protein 3149517..3150251 Bacillus pumilus SAFR-032 5622470 YP_001488390.1 CDS yusX NC_009848.1 3150268 3152061 R M3B subfamily peptidase complement(3150268..3152061) Bacillus pumilus SAFR-032 5622471 YP_001488391.1 CDS prfB NC_009848.1 3152186 3153169 R peptide chain release factor RF2 complement(3152186..3153169) Bacillus pumilus SAFR-032 5622472 YP_001488392.1 CDS secA NC_009848.1 3153355 3155880 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(3153355..3155880) Bacillus pumilus SAFR-032 5622473 YP_001488393.1 CDS raiA NC_009848.1 3156067 3156630 R Protein Y; ribosome-associated inhibitor A complement(3156067..3156630) Bacillus pumilus SAFR-032 5622474 YP_001488394.1 CDS BPUM_3180 NC_009848.1 3156820 3158505 R methyl-accepting chemotaxis protein complement(3156820..3158505) Bacillus pumilus SAFR-032 5622475 YP_001488395.1 CDS BPUM_3181 NC_009848.1 3158538 3158918 R hypothetical protein complement(3158538..3158918) Bacillus pumilus SAFR-032 5622476 YP_001488396.1 CDS fliT NC_009848.1 3158932 3159273 R flagellar protein FliT complement(3158932..3159273) Bacillus pumilus SAFR-032 5622477 YP_001488397.1 CDS fliS NC_009848.1 3159270 3159674 R flagellin specific chaperone; flagellar protein FliS complement(3159270..3159674) Bacillus pumilus SAFR-032 5622478 YP_001488398.1 CDS fliD NC_009848.1 3159692 3161206 R involved in flagellin assembly; flagellar capping protein complement(3159692..3161206) Bacillus pumilus SAFR-032 5622479 YP_001488399.1 CDS flaG NC_009848.1 3161227 3161568 R possibly involved in flagella export; flagellar protein FlaG complement(3161227..3161568) Bacillus pumilus SAFR-032 5622480 YP_001488400.1 CDS csrA NC_009848.1 3161730 3161954 R affects carbohydrate metabolism; has regulatory role in many processes; carbon storage regulator complement(3161730..3161954) Bacillus pumilus SAFR-032 5622481 YP_001488401.1 CDS BPUM_3187 NC_009848.1 3161948 3162382 R binds to flagellin and appears to stabilize flagellin during flagella assembly; flagellar assembly protein FliW complement(3161948..3162382) Bacillus pumilus SAFR-032 5622482 YP_001488402.1 CDS BPUM_3188 NC_009848.1 3162411 3162989 R YviE; hypothetical protein complement(3162411..3162989) Bacillus pumilus SAFR-032 5622483 YP_001488403.1 CDS flgL NC_009848.1 3163038 3163949 R with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgL complement(3163038..3163949) Bacillus pumilus SAFR-032 5622484 YP_001488404.1 CDS flgK NC_009848.1 3163959 3165479 R with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK complement(3163959..3165479) Bacillus pumilus SAFR-032 5622485 YP_001488405.1 CDS yvyG NC_009848.1 3165495 3165977 R hypothetical protein complement(3165495..3165977) Bacillus pumilus SAFR-032 5622486 YP_001488406.1 CDS flgM NC_009848.1 3165996 3166259 R anti-sigma-28 factor; transcriptional repressor FlgM complement(3165996..3166259) Bacillus pumilus SAFR-032 5622487 YP_001488407.1 CDS BPUM_3193 NC_009848.1 3166339 3166758 R YvyF; flagellar protein complement(3166339..3166758) Bacillus pumilus SAFR-032 5622488 YP_001488408.1 CDS comFC NC_009848.1 3166815 3167501 R competence protein FC complement(3166815..3167501) Bacillus pumilus SAFR-032 5622489 YP_001488409.1 CDS comFB NC_009848.1 3167498 3167791 R competence protein FB complement(3167498..3167791) Bacillus pumilus SAFR-032 5622490 YP_001488410.1 CDS comFA NC_009848.1 3167858 3169237 R competence protein FA complement(3167858..3169237) Bacillus pumilus SAFR-032 5622491 YP_001488411.1 CDS degV NC_009848.1 3169357 3170199 R YviA; hypothetical protein complement(3169357..3170199) Bacillus pumilus SAFR-032 5622492 YP_001488412.1 CDS degU NC_009848.1 3170417 3171106 R response regulator DegU complement(3170417..3171106) Bacillus pumilus SAFR-032 5622493 YP_001488413.1 CDS degS NC_009848.1 3171171 3172346 R sensor histidine kinase DegS complement(3171171..3172346) Bacillus pumilus SAFR-032 5622494 YP_001488414.1 CDS BPUM_3200 NC_009848.1 3172568 3173236 D YvyE; hypothetical protein 3172568..3173236 Bacillus pumilus SAFR-032 5622495 YP_001488415.1 CDS BPUM_3201 NC_009848.1 3173221 3174312 D YvhJ; transcriptional attenuator 3173221..3174312 Bacillus pumilus SAFR-032 5622496 YP_001488416.1 CDS mraY2 NC_009848.1 3174348 3175415 R TagO; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(3174348..3175415) Bacillus pumilus SAFR-032 5622497 YP_001488417.1 CDS tuaH NC_009848.1 3175546 3176745 R glycosyltransferase complement(3175546..3176745) Bacillus pumilus SAFR-032 5622498 YP_001488418.1 CDS tuaG NC_009848.1 3176762 3177517 R YvhG; family 2 glycosyltransferase complement(3176762..3177517) Bacillus pumilus SAFR-032 5622499 YP_001488419.1 CDS tuaF NC_009848.1 3177542 3178219 R hypothetical protein complement(3177542..3178219) Bacillus pumilus SAFR-032 5622500 YP_001488420.1 CDS BPUM_3206 NC_009848.1 3178292 3179749 R possible lipopolysaccharide biosynthesis protein TuaE; hypothetical protein complement(3178292..3179749) Bacillus pumilus SAFR-032 5622501 YP_001488421.1 CDS galE2 NC_009848.1 3179789 3180718 R UDP-glucose 4-epimerase complement(3179789..3180718) Bacillus pumilus SAFR-032 5622502 YP_001488422.1 CDS tuaD NC_009848.1 3180737 3182071 R UDP-glucose 6-dehydrogenase complement(3180737..3182071) Bacillus pumilus SAFR-032 5622503 YP_001488423.1 CDS tuaC NC_009848.1 3182151 3183335 R glycosyltransferase complement(3182151..3183335) Bacillus pumilus SAFR-032 5622504 YP_001488424.1 CDS tuaB NC_009848.1 3183332 3184783 R colanic acid exporter complement(3183332..3184783) Bacillus pumilus SAFR-032 5622505 YP_001488425.1 CDS tuaA NC_009848.1 3184802 3185461 R sugar transferase complement(3184802..3185461) Bacillus pumilus SAFR-032 5622506 YP_001488426.1 CDS BPUM_3213 NC_009848.1 3185815 3186246 R hypothetical protein complement(3185815..3186246) Bacillus pumilus SAFR-032 5622508 YP_001488427.1 CDS lytC NC_009848.1 3186470 3187960 R major autolysin LytC; N-acetylmuramoyl-L-alanine amidase complement(3186470..3187960) Bacillus pumilus SAFR-032 5622509 YP_001488428.1 CDS lytB NC_009848.1 3187983 3190091 R stage II sporulation protein complement(3187983..3190091) Bacillus pumilus SAFR-032 5622510 YP_001488429.1 CDS BPUM_3216 NC_009848.1 3190113 3190436 R lipoprotein complement(3190113..3190436) Bacillus pumilus SAFR-032 5622511 YP_001488430.1 CDS lytR NC_009848.1 3190619 3191539 D attenuator function for control of operon expression; membrane-bound transcriptional regulator LytR 3190619..3191539 Bacillus pumilus SAFR-032 5622512 YP_001488431.1 CDS mnaA NC_009848.1 3191622 3192761 R YvyH; UDP-N-acetylglucosamine 2-epimerase complement(3191622..3192761) Bacillus pumilus SAFR-032 5622513 YP_001488432.1 CDS gtaB NC_009848.1 3193001 3193882 D UTP--glucose-1-phosphate uridylyltransferase 3193001..3193882 Bacillus pumilus SAFR-032 5622514 YP_001488433.1 CDS tagH NC_009848.1 3193909 3195510 R with TagG is involved in the export of teichoic acids; teichoic acids export protein ATP-binding subunit complement(3193909..3195510) Bacillus pumilus SAFR-032 5622515 YP_001488434.1 CDS tagG NC_009848.1 3195530 3196357 R ABC transporter ATP-binding protein complement(3195530..3196357) Bacillus pumilus SAFR-032 5622516 YP_001488435.1 CDS BPUM_3222 NC_009848.1 3196510 3198342 R glycosyltransferase complement(3196510..3198342) Bacillus pumilus SAFR-032 5622517 YP_001488436.1 CDS BPUM_3223 NC_009848.1 3198329 3199507 R aminotransferase complement(3198329..3199507) Bacillus pumilus SAFR-032 5622518 YP_001488437.1 CDS BPUM_3224 NC_009848.1 3199508 3200788 R carbamoylphosphate synthase large subunit short form complement(3199508..3200788) Bacillus pumilus SAFR-032 5622519 YP_001488438.1 CDS BPUM_3225 NC_009848.1 3200801 3202804 R teichoic acid biosynthesis protein F; CDP-glycerol glycerophosphotransferase complement(3200801..3202804) Bacillus pumilus SAFR-032 5622520 YP_001488439.1 CDS rfbB NC_009848.1 3202901 3203962 R dTDP-glucose 4,6-dehydratase complement(3202901..3203962) Bacillus pumilus SAFR-032 5622521 YP_001488440.1 CDS BPUM_3227 NC_009848.1 3203982 3204866 R glucose-1-phosphate thymidylyltransferase complement(3203982..3204866) Bacillus pumilus SAFR-032 5622522 YP_001488441.1 CDS tagF NC_009848.1 3205081 3207336 R CDP-glycerol glycerophosphotransferase complement(3205081..3207336) Bacillus pumilus SAFR-032 5622523 YP_001488442.1 CDS tagE NC_009848.1 3207424 3209454 R poly(glycerol-phosphate) alpha-glucosyltransferase complement(3207424..3209454) Bacillus pumilus SAFR-032 5622524 YP_001488443.1 CDS tagD NC_009848.1 3209547 3209945 R teichoic acid synthase; glycerol-3-phosphate cytidylyltransferase complement(3209547..3209945) Bacillus pumilus SAFR-032 5622525 YP_001488444.1 CDS tagA NC_009848.1 3210306 3211076 D teichoic acid synthase; N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D- mannosaminyltransferase 3210306..3211076 Bacillus pumilus SAFR-032 5622526 YP_001488445.1 CDS tagB NC_009848.1 3211088 3212275 D teichoic acid synthase; CDP-glycerol glycerophosphotransferase 3211088..3212275 Bacillus pumilus SAFR-032 5622527 YP_001488446.1 CDS lytD NC_009848.1 3212293 3214923 R beta-N-acetylhexosaminidase complement(3212293..3214923) Bacillus pumilus SAFR-032 5622528 YP_001488447.1 CDS tagFA NC_009848.1 3215244 3218858 D glycosyltransferase 3215244..3218858 Bacillus pumilus SAFR-032 5622529 YP_001488448.1 CDS pmi NC_009848.1 3218924 3219874 R mannose-6-phosphate isomerase complement(3218924..3219874) Bacillus pumilus SAFR-032 5622530 YP_001488449.1 CDS BPUM_3236 NC_009848.1 3220021 3220842 R sugar ABC transporter ATP-binding protein complement(3220021..3220842) Bacillus pumilus SAFR-032 5622531 YP_001488450.1 CDS BPUM_3237 NC_009848.1 3220839 3221810 R sugar ABC transporter ATP-binding protein complement(3220839..3221810) Bacillus pumilus SAFR-032 5622532 YP_001488451.1 CDS BPUM_3238 NC_009848.1 3221866 3223131 R sugar ABC transporter ATP-binding protein complement(3221866..3223131) Bacillus pumilus SAFR-032 5622533 YP_001488452.1 CDS BPUM_3239 NC_009848.1 3223234 3224652 R response regulator complement(3223234..3224652) Bacillus pumilus SAFR-032 5622534 YP_001488453.1 CDS BPUM_3240 NC_009848.1 3224646 3225920 R sensor histidine kinase complement(3224646..3225920) Bacillus pumilus SAFR-032 5622535 YP_001488454.1 CDS BPUM_3241 NC_009848.1 3226085 3227089 R sugar ABC transporter ATP-binding protein complement(3226085..3227089) Bacillus pumilus SAFR-032 5622536 YP_001488455.1 CDS ysnE NC_009848.1 3227154 3227621 R GNAT family acetyltransferase complement(3227154..3227621) Bacillus pumilus SAFR-032 5622537 YP_001488456.1 CDS kdgA NC_009848.1 3227731 3228330 R 2-keto-3-deoxygluconate-6-phosphate aldolase complement(3227731..3228330) Bacillus pumilus SAFR-032 5622538 YP_001488457.1 CDS kdgK NC_009848.1 3228302 3229318 R 2-dehydro-3-deoxygluconokinase complement(3228302..3229318) Bacillus pumilus SAFR-032 5622539 YP_001488458.1 CDS kdgR NC_009848.1 3229405 3230415 R PurR family transcriptional regulator complement(3229405..3230415) Bacillus pumilus SAFR-032 5622540 YP_001488459.1 CDS kduI NC_009848.1 3230678 3231505 D 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 3230678..3231505 Bacillus pumilus SAFR-032 5622541 YP_001488460.1 CDS kduD NC_009848.1 3231510 3232283 D Involved in the metabolism of 2-deoxyglucose; 2-deoxy-D-gluconate 3-dehydrogenase 3231510..3232283 Bacillus pumilus SAFR-032 5622542 YP_001488461.1 CDS gerBA NC_009848.1 3232389 3233855 D spore germination protein B1; spore germination protein BA 3232389..3233855 Bacillus pumilus SAFR-032 5622543 YP_001488462.1 CDS gerBB NC_009848.1 3233859 3234959 D spore germination protein BB 3233859..3234959 Bacillus pumilus SAFR-032 5622544 YP_001488463.1 CDS gerBC NC_009848.1 3234956 3236101 D spore germination protein BC 3234956..3236101 Bacillus pumilus SAFR-032 5622545 YP_001488464.1 CDS BPUM_3251 NC_009848.1 3236114 3237652 R glycosyltransferase complement(3236114..3237652) Bacillus pumilus SAFR-032 5622546 YP_001488465.1 CDS ywtG NC_009848.1 3237649 3239013 R sugar transporter; major facilitator superfamily transporter complement(3237649..3239013) Bacillus pumilus SAFR-032 5622547 YP_001488466.1 CDS ywtF NC_009848.1 3239284 3240249 D LytR family transcriptional regulator 3239284..3240249 Bacillus pumilus SAFR-032 5622548 YP_001488467.1 CDS ywtE NC_009848.1 3240418 3241320 D HAD family hydrolase 3240418..3241320 Bacillus pumilus SAFR-032 5622549 YP_001488468.1 CDS ywtD NC_009848.1 3241377 3242600 R gamma-glutamyl DD-amidohydrolase, poly-gamma-glutamate hydrolase PgdS; C40 family peptidase complement(3241377..3242600) Bacillus pumilus SAFR-032 5622550 YP_001488469.1 CDS ywtC NC_009848.1 3242708 3242878 R poly-gamma-glutamate synthesis protein YwtC complement(3242708..3242878) Bacillus pumilus SAFR-032 5622551 YP_001488470.1 CDS ywtB NC_009848.1 3242875 3244041 R PgsA; poly-gamma-glutamate synthesis protein YwtB complement(3242875..3244041) Bacillus pumilus SAFR-032 5622552 YP_001488471.1 CDS ywtA NC_009848.1 3244060 3244509 R PgsC; poly-gamma-glutamate synthesis protein YwtA complement(3244060..3244509) Bacillus pumilus SAFR-032 5622553 YP_001488472.1 CDS ywsC NC_009848.1 3244525 3245706 R gamma-polyglutamic acid synthetase PgsB CapB; capsule biosynthesis protein YwsC complement(3244525..3245706) Bacillus pumilus SAFR-032 5622554 YP_001488473.1 CDS gerKA NC_009848.1 3246452 3247933 D spore germination protein KA 3246452..3247933 Bacillus pumilus SAFR-032 5622555 YP_001488474.1 CDS gerKB NC_009848.1 3247923 3249020 D spore germination protein KB 3247923..3249020 Bacillus pumilus SAFR-032 5622556 YP_001488475.1 CDS gerKC NC_009848.1 3249010 3250152 D spore germination protein KC 3249010..3250152 Bacillus pumilus SAFR-032 5622557 YP_001488476.1 CDS rbsR NC_009848.1 3250270 3251256 D LacI family transcriptional regulator 3250270..3251256 Bacillus pumilus SAFR-032 5622558 YP_001488477.1 CDS rbsK NC_009848.1 3251253 3252131 D ribokinase 3251253..3252131 Bacillus pumilus SAFR-032 5622559 YP_001488478.1 CDS rbsD NC_009848.1 3252128 3252520 D ribose ABC transporter ATP-binding protein 3252128..3252520 Bacillus pumilus SAFR-032 5622560 YP_001488479.1 CDS rbsA NC_009848.1 3252536 3254017 D ribose ABC transporter ATP-binding protein 3252536..3254017 Bacillus pumilus SAFR-032 5622561 YP_001488480.1 CDS rbsC NC_009848.1 3254019 3254972 D ribose ABC transporter ATP-binding protein 3254019..3254972 Bacillus pumilus SAFR-032 5622562 YP_001488481.1 CDS rbsB NC_009848.1 3254986 3255903 D ribose ABC transporter ATP-binding protein 3254986..3255903 Bacillus pumilus SAFR-032 5622563 YP_001488482.1 CDS ywrF NC_009848.1 3256142 3256744 R hypothetical protein complement(3256142..3256744) Bacillus pumilus SAFR-032 5622564 YP_001488483.1 CDS alsR NC_009848.1 3256810 3257706 R LysR family transcriptional regulator complement(3256810..3257706) Bacillus pumilus SAFR-032 5622565 YP_001488484.1 CDS alsS NC_009848.1 3257857 3259557 D catalyzes the formation of 2-acetolactate from pyruvate in stationary phase; acetolactate synthase 3257857..3259557 Bacillus pumilus SAFR-032 5622566 YP_001488485.1 CDS alsD NC_009848.1 3259593 3260363 D acetolactate decarboxylase 3259593..3260363 Bacillus pumilus SAFR-032 5622567 YP_001488486.1 CDS ywrC NC_009848.1 3260481 3260993 D Lrp/AsnC family transcriptional regulator 3260481..3260993 Bacillus pumilus SAFR-032 5622568 YP_001488487.1 CDS ywrB NC_009848.1 3261040 3261591 D CHR family chromate ion transporter 3261040..3261591 Bacillus pumilus SAFR-032 5622569 YP_001488488.1 CDS ywrA NC_009848.1 3261588 3262124 D CHR family chromate ion transporter 3261588..3262124 Bacillus pumilus SAFR-032 5622570 YP_001488489.1 CDS ywqF NC_009848.1 3262160 3263479 R UDP-glucose 6-dehydrogenase complement(3262160..3263479) Bacillus pumilus SAFR-032 5622571 YP_001488490.1 CDS BPUM_3277 NC_009848.1 3263596 3263739 R hypothetical protein complement(3263596..3263739) Bacillus pumilus SAFR-032 5622572 YP_001488491.1 CDS ywqB NC_009848.1 3263926 3265533 D hypothetical protein 3263926..3265533 Bacillus pumilus SAFR-032 5622573 YP_001488492.1 CDS ywqA NC_009848.1 3265520 3268297 D HepA; SNF2 family helicase 3265520..3268297 Bacillus pumilus SAFR-032 5622574 YP_001488493.1 CDS ytvA2 NC_009848.1 3268368 3269156 R hypothetical protein complement(3268368..3269156) Bacillus pumilus SAFR-032 5622575 YP_001488494.1 CDS ywpJ NC_009848.1 3269310 3270134 R HAD family hydrolase complement(3269310..3270134) Bacillus pumilus SAFR-032 5622576 YP_001488495.1 CDS BPUM_3282 NC_009848.1 3270241 3270396 D hypothetical protein 3270241..3270396 Bacillus pumilus SAFR-032 5622577 YP_001488496.1 CDS ywpG NC_009848.1 3270541 3270918 R hypothetical protein complement(3270541..3270918) Bacillus pumilus SAFR-032 5622578 YP_001488497.1 CDS ywpF NC_009848.1 3271015 3271425 D hypothetical protein 3271015..3271425 Bacillus pumilus SAFR-032 5622579 YP_001488498.1 CDS mscL NC_009848.1 3271615 3272010 R large conductance mechanosensitive channel protein YwpC; MscL family large conductance mechanosensitive ion channel protein complement(3271615..3272010) Bacillus pumilus SAFR-032 5622580 YP_001488499.1 CDS fabZ NC_009848.1 3272137 3272571 R 3-hydroxydecanoyl-ACP dehydratase complement(3272137..3272571) Bacillus pumilus SAFR-032 5622581 YP_001488500.1 CDS rapD1 NC_009848.1 3272790 3273845 D aspartate phosphatase response regulator 3272790..3273845 Bacillus pumilus SAFR-032 5622582 YP_001488501.1 CDS flhP NC_009848.1 3273860 3274678 R flagellar hook-basal body protein complement(3273860..3274678) Bacillus pumilus SAFR-032 5622583 YP_001488502.1 CDS flhO NC_009848.1 3274709 3275548 R flagellar basal-body rod protein complement(3274709..3275548) Bacillus pumilus SAFR-032 5622584 YP_001488503.1 CDS mbl NC_009848.1 3275673 3276674 R rod shape-determining protein Mbl complement(3275673..3276674) Bacillus pumilus SAFR-032 5622585 YP_001488504.1 CDS spoIIID NC_009848.1 3276859 3277137 R stage III sporulation protein D complement(3276859..3277137) Bacillus pumilus SAFR-032 5622586 YP_001488505.1 CDS ywoH NC_009848.1 3277476 3277889 D MarR family transcriptional regulator 3277476..3277889 Bacillus pumilus SAFR-032 5622587 YP_001488506.1 CDS ywoG NC_009848.1 3277903 3279090 D possible quinolone resistance protein; major facilitator superfamily transporter 3277903..3279090 Bacillus pumilus SAFR-032 5622588 YP_001488507.1 CDS ywoA NC_009848.1 3279165 3279794 D possible acid phosphatase/vanadium-dependent haloperoxidase BcrC; phosphatase 3279165..3279794 Bacillus pumilus SAFR-032 5622589 YP_001488508.1 CDS ywoD NC_009848.1 3279832 3281220 R major facilitator superfamily transporter complement(3279832..3281220) Bacillus pumilus SAFR-032 5622590 YP_001488509.1 CDS BPUM_3296 NC_009848.1 3281399 3282286 D PbpB; amino acid ABC transporter ATP-binding protein 3281399..3282286 Bacillus pumilus SAFR-032 5622591 YP_001488510.1 CDS BPUM_3297 NC_009848.1 3282327 3283004 D amino acid ABC transporter ATP-binding protein 3282327..3283004 Bacillus pumilus SAFR-032 5622592 YP_001488511.1 CDS glnQ2 NC_009848.1 3282958 3283755 D glutamine ABC transporter ATP-binding protein 3282958..3283755 Bacillus pumilus SAFR-032 5622593 YP_001488512.1 CDS BPUM_3299 NC_009848.1 3283777 3283962 D hypothetical protein 3283777..3283962 Bacillus pumilus SAFR-032 5622594 YP_001488513.1 CDS nrgA NC_009848.1 3283949 3285157 D ammonium transporter 3283949..3285157 Bacillus pumilus SAFR-032 5622595 YP_001488514.1 CDS nrgB NC_009848.1 3285176 3285523 D nitrogen-regulated PII-like protein 3285176..3285523 Bacillus pumilus SAFR-032 5622596 YP_001488515.1 CDS spoIIQ NC_009848.1 3285603 3286499 R stage II sporulation membrane protein Q complement(3285603..3286499) Bacillus pumilus SAFR-032 5622597 YP_001488516.1 CDS ywnH NC_009848.1 3286631 3287125 D phosphinothricin acetyltransferase; acetyltransferase 3286631..3287125 Bacillus pumilus SAFR-032 5622598 YP_001488517.1 CDS BPUM_3304 NC_009848.1 3287360 3287890 R hypothetical protein complement(3287360..3287890) Bacillus pumilus SAFR-032 5622599 YP_001488518.1 CDS BPUM_3305 NC_009848.1 3287887 3288444 R possible methylamine utilisation protein MauE; hypothetical protein complement(3287887..3288444) Bacillus pumilus SAFR-032 5622600 YP_001488519.1 CDS ygaD NC_009848.1 3288446 3290257 R ABC transporter ATP-binding protein complement(3288446..3290257) Bacillus pumilus SAFR-032 5622601 YP_001488520.1 CDS BPUM_3307 NC_009848.1 3290302 3290853 D hypothetical protein 3290302..3290853 Bacillus pumilus SAFR-032 5622602 YP_001488521.1 CDS BPUM_3308 NC_009848.1 3290899 3291303 R hypothetical protein complement(3290899..3291303) Bacillus pumilus SAFR-032 5622603 YP_001488522.1 CDS ywnG NC_009848.1 3291831 3292253 D hypothetical protein 3291831..3292253 Bacillus pumilus SAFR-032 5622604 YP_001488523.1 CDS rpmG NC_009848.1 3292396 3292545 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 3292396..3292545 Bacillus pumilus SAFR-032 5622605 YP_001488524.1 CDS yciC NC_009848.1 3292627 3293823 D cobalamin synthesis protein 3292627..3293823 Bacillus pumilus SAFR-032 5622606 YP_001488525.1 CDS rpsN2 NC_009848.1 3293840 3294109 D YhzA; 30S ribosomal protein S14 3293840..3294109 Bacillus pumilus SAFR-032 5622607 YP_001488526.1 CDS BPUM_3313 NC_009848.1 3294184 3294363 R hypothetical protein complement(3294184..3294363) Bacillus pumilus SAFR-032 5622608 YP_001488527.1 CDS moaA NC_009848.1 3294363 3295370 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(3294363..3295370) Bacillus pumilus SAFR-032 5622609 YP_001488528.1 CDS fdhD NC_009848.1 3295381 3296169 R involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein complement(3295381..3296169) Bacillus pumilus SAFR-032 5622610 YP_001488529.1 CDS ybfB NC_009848.1 3296304 3297569 D major facilitator superfamily oxalate:formate antiporter 3296304..3297569 Bacillus pumilus SAFR-032 5622611 YP_001488530.1 CDS BPUM_3317 NC_009848.1 3297652 3300000 D dehydrogenase alpha (molybdopterin) subunit 3297652..3300000 Bacillus pumilus SAFR-032 5622612 YP_001488531.1 CDS ywmD NC_009848.1 3300053 3300730 R possible D-amino acid dehydrogenase, large subunit; hypothetical protein complement(3300053..3300730) Bacillus pumilus SAFR-032 5622613 YP_001488532.1 CDS ywmC NC_009848.1 3300813 3301514 R possible D-amino acid dehydrogenase, large subunit; hypothetical protein complement(3300813..3301514) Bacillus pumilus SAFR-032 5622614 YP_001488533.1 CDS spoIID NC_009848.1 3301837 3302862 R stage II sporulation protein D complement(3301837..3302862) Bacillus pumilus SAFR-032 5622615 YP_001488534.1 CDS murAA NC_009848.1 3303118 3304425 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3303118..3304425) Bacillus pumilus SAFR-032 5622616 YP_001488535.1 CDS ywmB NC_009848.1 3304458 3305192 R hypothetical protein complement(3304458..3305192) Bacillus pumilus SAFR-032 5622617 YP_001488536.1 CDS ywzB NC_009848.1 3305321 3305551 R hypothetical protein complement(3305321..3305551) Bacillus pumilus SAFR-032 5622618 YP_001488537.1 CDS ywmA NC_009848.1 3305689 3306195 D hypothetical protein 3305689..3306195 Bacillus pumilus SAFR-032 5622619 YP_001488538.1 CDS atpC NC_009848.1 3306237 3306632 R proton (H+) translocating F-type ATPase (F-ATPase), F(1) epsilon subunit; H(+)-transporting two-sector ATPase, F(1) epsilon subunit complement(3306237..3306632) Bacillus pumilus SAFR-032 5622620 YP_001488539.1 CDS atpD NC_009848.1 3306657 3308078 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta complement(3306657..3308078) Bacillus pumilus SAFR-032 5622621 YP_001488540.1 CDS atpG NC_009848.1 3308103 3308969 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(3308103..3308969) Bacillus pumilus SAFR-032 5622622 YP_001488541.1 CDS atpA NC_009848.1 3309058 3310566 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(3309058..3310566) Bacillus pumilus SAFR-032 5622623 YP_001488542.1 CDS atpH NC_009848.1 3310583 3311128 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(3310583..3311128) Bacillus pumilus SAFR-032 5622624 YP_001488543.1 CDS atpF NC_009848.1 3311125 3311637 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B complement(3311125..3311637) Bacillus pumilus SAFR-032 5622625 YP_001488544.1 CDS atpE NC_009848.1 3311758 3311970 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C complement(3311758..3311970) Bacillus pumilus SAFR-032 5622626 YP_001488545.1 CDS atpB NC_009848.1 3312019 3312753 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(3312019..3312753) Bacillus pumilus SAFR-032 5622627 YP_001488546.1 CDS atpI NC_009848.1 3312761 3313144 R proton (H+) translocating F-type ATPase (F-ATPase), F(0) subunit I; H(+)-transporting two-sector ATPase, F(0) subunit I complement(3312761..3313144) Bacillus pumilus SAFR-032 5622628 YP_001488547.1 CDS upp NC_009848.1 3313641 3314270 R Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase complement(3313641..3314270) Bacillus pumilus SAFR-032 5622629 YP_001488548.1 CDS glyA NC_009848.1 3314418 3315665 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(3314418..3315665) Bacillus pumilus SAFR-032 5622630 YP_001488549.1 CDS ywlG NC_009848.1 3315842 3316381 R hypothetical protein complement(3315842..3316381) Bacillus pumilus SAFR-032 5622631 YP_001488550.1 CDS ywlF NC_009848.1 3316394 3316843 R catalyzes the interconversion of ribose 5-phosphate to ribulose 5-phosphate; enzyme from E. coli shows allose 6-phosphate isomerase activity; ribose-5-phosphate isomerase B complement(3316394..3316843) Bacillus pumilus SAFR-032 5622632 YP_001488551.1 CDS ywlE NC_009848.1 3316984 3317442 R protein-tyrosine-phosphatase YwlE complement(3316984..3317442) Bacillus pumilus SAFR-032 5622633 YP_001488552.1 CDS ywlD NC_009848.1 3317506 3318060 R hypothetical protein complement(3317506..3318060) Bacillus pumilus SAFR-032 5622634 YP_001488553.1 CDS ywlC NC_009848.1 3318121 3319176 R possible translation protein YwlC; hypothetical protein complement(3318121..3319176) Bacillus pumilus SAFR-032 5622635 YP_001488554.1 CDS ywlB NC_009848.1 3319335 3319778 R possible acyl-CoA N-acyltransferase; hypothetical protein complement(3319335..3319778) Bacillus pumilus SAFR-032 5622636 YP_001488555.1 CDS spoIIR NC_009848.1 3319842 3320498 R stage II sporulation protein R complement(3319842..3320498) Bacillus pumilus SAFR-032 5622637 YP_001488556.1 CDS BPUM_3343 NC_009848.1 3320618 3321097 R hypothetical protein complement(3320618..3321097) Bacillus pumilus SAFR-032 5622638 YP_001488557.1 CDS hemK NC_009848.1 3321236 3322123 R YwkE; polypeptide chain release factor methyltransferase complement(3321236..3322123) Bacillus pumilus SAFR-032 5622639 YP_001488558.1 CDS prfA NC_009848.1 3322113 3323180 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(3322113..3323180) Bacillus pumilus SAFR-032 5622640 YP_001488559.1 CDS racA NC_009848.1 3323391 3323939 D remodeling and anchoring of the chromosome protein; in Bacillus subtilis this protein functions in polar chromosome segregation during sporulation; binds inverted sequence motifs called ram along the chromosome; condenses DNA via RacA-RacA interactions; polar chromosome segregation protein 3323391..3323939 Bacillus pumilus SAFR-032 5622641 YP_001488560.1 CDS ywkB NC_009848.1 3323974 3324930 R malonate efflux carrier complement(3323974..3324930) Bacillus pumilus SAFR-032 5622642 YP_001488561.1 CDS ywkA NC_009848.1 3325023 3326723 R malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase complement(3325023..3326723) Bacillus pumilus SAFR-032 5622643 YP_001488562.1 CDS tdk NC_009848.1 3327003 3327605 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(3327003..3327605) Bacillus pumilus SAFR-032 5622644 YP_001488563.1 CDS rpmE NC_009848.1 3327693 3327893 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(3327693..3327893) Bacillus pumilus SAFR-032 5622645 YP_001488564.1 CDS BPUM_3352 NC_009848.1 3329455 3329610 D hypothetical protein 3329455..3329610 Bacillus pumilus SAFR-032 5622647 YP_001488565.1 CDS glpX NC_009848.1 3329673 3330638 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(3329673..3330638) Bacillus pumilus SAFR-032 5622648 YP_001488566.1 CDS murAB NC_009848.1 3330671 3331960 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(3330671..3331960) Bacillus pumilus SAFR-032 5622649 YP_001488567.1 CDS BPUM_3355 NC_009848.1 3332043 3332207 R hypothetical protein complement(3332043..3332207) Bacillus pumilus SAFR-032 5622650 YP_001488568.1 CDS ywjH NC_009848.1 3332208 3332846 R similar to novel fructose-6-phosphate aldolase from Escherichia coli; enzyme from Methanocaldococcus janaschii shows transaldolase activity; putative translaldolase complement(3332208..3332846) Bacillus pumilus SAFR-032 5622651 YP_001488569.1 CDS fbaA NC_009848.1 3332958 3333815 R catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; induced by anaerobic conditions in Bacillus subtilis; fructose-bisphosphate aldolase complement(3332958..3333815) Bacillus pumilus SAFR-032 5622652 YP_001488570.1 CDS spo0F NC_009848.1 3333994 3334368 R stage 0 sporulation initiation phosphotransferase F complement(3333994..3334368) Bacillus pumilus SAFR-032 5622653 YP_001488571.1 CDS ywjG NC_009848.1 3334549 3335079 D hypothetical protein 3334549..3335079 Bacillus pumilus SAFR-032 5622654 YP_001488572.1 CDS pyrG NC_009848.1 3335122 3336729 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(3335122..3336729) Bacillus pumilus SAFR-032 5622655 YP_001488573.1 CDS BPUM_3361 NC_009848.1 3336968 3337507 R participates in both the initiation and recycling phases of transcription; in the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; DNA-directed RNA polymerase subunit delta complement(3336968..3337507) Bacillus pumilus SAFR-032 5622656 YP_001488574.1 CDS BPUM_3362 NC_009848.1 3337947 3338450 R hypothetical protein complement(3337947..3338450) Bacillus pumilus SAFR-032 5622657 YP_001488575.1 CDS lanH NC_009848.1 3338429 3339043 R lantibiotic immunity protein LanH; ABC transporter ATP-binding protein complement(3338429..3339043) Bacillus pumilus SAFR-032 5622658 YP_001488576.1 CDS BPUM_3364 NC_009848.1 3339074 3339604 R hypothetical protein complement(3339074..3339604) Bacillus pumilus SAFR-032 5622659 YP_001488577.1 CDS BPUM_3365 NC_009848.1 3339618 3340751 R hypothetical protein complement(3339618..3340751) Bacillus pumilus SAFR-032 5622660 YP_001488578.1 CDS BPUM_3366 NC_009848.1 3340760 3340936 R hypothetical protein complement(3340760..3340936) Bacillus pumilus SAFR-032 5622661 YP_001488579.1 CDS BPUM_3367 NC_009848.1 3341088 3341303 R hypothetical protein complement(3341088..3341303) Bacillus pumilus SAFR-032 5622662 YP_001488580.1 CDS BPUM_3368 NC_009848.1 3341601 3341756 R hypothetical protein complement(3341601..3341756) Bacillus pumilus SAFR-032 5622663 YP_001488581.1 CDS BPUM_3369 NC_009848.1 3342380 3342571 R hypothetical protein complement(3342380..3342571) Bacillus pumilus SAFR-032 5622664 YP_001488582.1 CDS BPUM_3370 NC_009848.1 3342879 3344021 R acyl-CoA dehydrogenase (NADP(+)) complement(3342879..3344021) Bacillus pumilus SAFR-032 5622665 YP_001488583.1 CDS mmgC NC_009848.1 3344038 3345150 R acyl-CoA dehydrogenase (NADP(+)) complement(3344038..3345150) Bacillus pumilus SAFR-032 5622666 YP_001488584.1 CDS mmgB NC_009848.1 3345162 3346025 R 3-hydroxybutyryl-CoA dehydrogenase complement(3345162..3346025) Bacillus pumilus SAFR-032 5622667 YP_001488585.1 CDS mmgA NC_009848.1 3346045 3347220 R acetyl-CoA C-acetyltransferase complement(3346045..3347220) Bacillus pumilus SAFR-032 5622668 YP_001488586.1 CDS ywjF NC_009848.1 3347323 3349434 R Fe-S dehydrogenase complement(3347323..3349434) Bacillus pumilus SAFR-032 5622669 YP_001488587.1 CDS ywjE NC_009848.1 3349578 3350774 D phospholipase D 3349578..3350774 Bacillus pumilus SAFR-032 5622670 YP_001488588.1 CDS uvsE NC_009848.1 3350787 3351749 D YwjD; putative UV damage endonuclease 3350787..3351749 Bacillus pumilus SAFR-032 5622671 YP_001488589.1 CDS ywjC NC_009848.1 3351823 3352077 D hypothetical protein 3351823..3352077 Bacillus pumilus SAFR-032 5622672 YP_001488590.1 CDS BPUM_3378 NC_009848.1 3352104 3353102 R microcin immunity protein complement(3352104..3353102) Bacillus pumilus SAFR-032 5622673 YP_001488591.1 CDS ywjA NC_009848.1 3353373 3355088 R ABC transporter ATP-binding protein complement(3353373..3355088) Bacillus pumilus SAFR-032 5622674 YP_001488592.1 CDS ywiE NC_009848.1 3355194 3356696 R cardiolipin synthetase complement(3355194..3356696) Bacillus pumilus SAFR-032 5622675 YP_001488593.1 CDS BPUM_3381 NC_009848.1 3356853 3357824 D possible microcin immunity protein; U61 family carboxypeptidase 3356853..3357824 Bacillus pumilus SAFR-032 5622676 YP_001488594.1 CDS yozM NC_009848.1 3358215 3358493 D hypothetical protein 3358215..3358493 Bacillus pumilus SAFR-032 5622677 YP_001488595.1 CDS argS NC_009848.1 3358544 3360217 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(3358544..3360217) Bacillus pumilus SAFR-032 5622678 YP_001488596.1 CDS ywiB NC_009848.1 3360214 3360636 R hypothetical protein complement(3360214..3360636) Bacillus pumilus SAFR-032 5622679 YP_001488597.1 CDS BPUM_3385 NC_009848.1 3360761 3361108 R hypothetical protein complement(3360761..3361108) Bacillus pumilus SAFR-032 5622680 YP_001488598.1 CDS speB NC_009848.1 3361185 3362057 R agmatinase complement(3361185..3362057) Bacillus pumilus SAFR-032 5622681 YP_001488599.1 CDS speE NC_009848.1 3362127 3362957 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(3362127..3362957) Bacillus pumilus SAFR-032 5622682 YP_001488600.1 CDS ywhE NC_009848.1 3363182 3365251 D penicillin-binding protein 3363182..3365251 Bacillus pumilus SAFR-032 5622683 YP_001488601.1 CDS ywhD NC_009848.1 3365385 3365903 R hypothetical protein complement(3365385..3365903) Bacillus pumilus SAFR-032 5622684 YP_001488602.1 CDS ywhC NC_009848.1 3365916 3366578 R M50 family membrane metalloprotease complement(3365916..3366578) Bacillus pumilus SAFR-032 5622685 YP_001488603.1 CDS ywhB NC_009848.1 3366686 3366871 D 4-oxalocrotonate tautomerase 3366686..3366871 Bacillus pumilus SAFR-032 5622686 YP_001488604.1 CDS BPUM_3392 NC_009848.1 3366921 3367733 R hypothetical protein complement(3366921..3367733) Bacillus pumilus SAFR-032 5622687 YP_001488605.1 CDS ywgA NC_009848.1 3367959 3368459 R hypothetical protein complement(3367959..3368459) Bacillus pumilus SAFR-032 5622688 YP_001488606.1 CDS ywfO NC_009848.1 3368490 3369791 R HD superfamily phosphohydrolase complement(3368490..3369791) Bacillus pumilus SAFR-032 5622689 YP_001488607.1 CDS ywzC NC_009848.1 3369962 3370249 R hypothetical protein complement(3369962..3370249) Bacillus pumilus SAFR-032 5622690 YP_001488608.1 CDS rsfA NC_009848.1 3370422 3371222 D prespore-specific transcriptional regulator; transcriptional regulator 3370422..3371222 Bacillus pumilus SAFR-032 5622691 YP_001488609.1 CDS BPUM_3397 NC_009848.1 3371257 3371490 R hypothetical protein complement(3371257..3371490) Bacillus pumilus SAFR-032 5622692 YP_001488610.1 CDS BPUM_3398 NC_009848.1 3371487 3373763 R glycosyltransferase complement(3371487..3373763) Bacillus pumilus SAFR-032 5622693 YP_001488611.1 CDS BPUM_3399 NC_009848.1 3373883 3374416 R hypothetical protein complement(3373883..3374416) Bacillus pumilus SAFR-032 5622694 YP_001488612.1 CDS BPUM_3400 NC_009848.1 3374397 3375242 R YwfL; lipoate--protein ligase complement(3374397..3375242) Bacillus pumilus SAFR-032 5622695 YP_001488613.1 CDS BPUM_3401 NC_009848.1 3375399 3375785 R hypothetical protein complement(3375399..3375785) Bacillus pumilus SAFR-032 5622696 YP_001488614.1 CDS BPUM_3402 NC_009848.1 3376046 3376363 R hypothetical protein complement(3376046..3376363) Bacillus pumilus SAFR-032 5622697 YP_001488615.1 CDS BPUM_3403 NC_009848.1 3376385 3376660 R hypothetical protein complement(3376385..3376660) Bacillus pumilus SAFR-032 5622698 YP_001488616.1 CDS BPUM_3404 NC_009848.1 3376641 3376826 R hypothetical protein complement(3376641..3376826) Bacillus pumilus SAFR-032 5622699 YP_001488617.1 CDS BPUM_3405 NC_009848.1 3377115 3377510 R hypothetical protein complement(3377115..3377510) Bacillus pumilus SAFR-032 5622700 YP_001488618.1 CDS BPUM_3406 NC_009848.1 3377799 3378125 R hypothetical protein complement(3377799..3378125) Bacillus pumilus SAFR-032 5622701 YP_001488619.1 CDS BPUM_3407 NC_009848.1 3378141 3379664 R transposase complement(3378141..3379664) Bacillus pumilus SAFR-032 5622702 YP_001488620.1 CDS BPUM_3408 NC_009848.1 3379676 3379954 R hypothetical protein complement(3379676..3379954) Bacillus pumilus SAFR-032 5622703 YP_001488621.1 CDS BPUM_3410 NC_009848.1 3380532 3380798 R hypothetical protein complement(3380532..3380798) Bacillus pumilus SAFR-032 5622705 YP_001488622.1 CDS BPUM_3411 NC_009848.1 3380812 3382146 R TRAP-T family tripartite ATP-independent periplasmic membrane protein complement(3380812..3382146) Bacillus pumilus SAFR-032 5622706 YP_001488623.1 CDS BPUM_3412 NC_009848.1 3382188 3383063 R 3-hydroxyisobutyrate dehydrogenase complement(3382188..3383063) Bacillus pumilus SAFR-032 5622707 YP_001488624.1 CDS BPUM_3413 NC_009848.1 3383076 3383747 R dimethylmenaquinone methyltransferase complement(3383076..3383747) Bacillus pumilus SAFR-032 5622708 YP_001488625.1 CDS BPUM_3414 NC_009848.1 3383892 3384743 R transcriptional regulator complement(3383892..3384743) Bacillus pumilus SAFR-032 5622709 YP_001488626.1 CDS eutD NC_009848.1 3384859 3385830 R in Salmonella this enzyme is required for ethanolamine catabolism; has higher affinity for CoA than Pta; phosphotransacetylase complement(3384859..3385830) Bacillus pumilus SAFR-032 5622710 YP_001488627.1 CDS ywfI NC_009848.1 3386071 3386841 D putative heme peroxidase 3386071..3386841 Bacillus pumilus SAFR-032 5622711 YP_001488628.1 CDS BPUM_3417 NC_009848.1 3386908 3388068 D major facilitator superfamily transporter 3386908..3388068 Bacillus pumilus SAFR-032 5622712 YP_001488629.1 CDS BPUM_3418 NC_009848.1 3388082 3388627 R Lrp/Asn family transcriptional regulator complement(3388082..3388627) Bacillus pumilus SAFR-032 5622713 YP_001488630.1 CDS ywfA NC_009848.1 3388707 3389939 D major facilitator superfamily transporter 3388707..3389939 Bacillus pumilus SAFR-032 5622714 YP_001488631.1 CDS bacA NC_009848.1 3390089 3390691 D ywfB; bacilysin biosynthesis protein BacA 3390089..3390691 Bacillus pumilus SAFR-032 5622715 YP_001488632.1 CDS bacB NC_009848.1 3390693 3391400 D ywfC; bacilysin biosynthesis protein BacB 3390693..3391400 Bacillus pumilus SAFR-032 5622716 YP_001488633.1 CDS bacC NC_009848.1 3391397 3392158 D oxidoreductase YwfD; bacilysin biosynthesis protein BacC 3391397..3392158 Bacillus pumilus SAFR-032 5622717 YP_001488634.1 CDS bacD NC_009848.1 3392174 3393595 D alanine-anticapsin ligase YwfE; bacilysin biosynthesis protein BacD 3392174..3393595 Bacillus pumilus SAFR-032 5622718 YP_001488635.1 CDS ywfG NC_009848.1 3393611 3394807 D produces methionine from 2-keto-4-methylthiobutyrate and glutamine in vitro; mutations do not affect methionine salvage in vivo however; transaminase 3393611..3394807 Bacillus pumilus SAFR-032 5622719 YP_001488636.1 CDS ywfH NC_009848.1 3394822 3395658 R short chain dehydrogenase complement(3394822..3395658) Bacillus pumilus SAFR-032 5622720 YP_001488637.1 CDS spsL NC_009848.1 3395715 3396170 R dTDP-4-dehydrorhamnose 3,5-epimerase RfbC; spore coat polysaccharide biosynthesis protein SpsL complement(3395715..3396170) Bacillus pumilus SAFR-032 5622721 YP_001488638.1 CDS spsK NC_009848.1 3396163 3397017 R dTDP-4-dehydrorhamnose reductase RfbD; spore coat polysaccharide biosynthesis protein SpsK complement(3396163..3397017) Bacillus pumilus SAFR-032 5622722 YP_001488639.1 CDS spsJ NC_009848.1 3397021 3397986 R dTDP-D-glucose 4,6-dehydratase RfbB; spore coat polysaccharide biosynthesis protein SpsJ complement(3397021..3397986) Bacillus pumilus SAFR-032 5622723 YP_001488640.1 CDS spsI NC_009848.1 3397983 3398723 R spore coat polysaccharide biosynthesis protein SpsI complement(3397983..3398723) Bacillus pumilus SAFR-032 5622724 YP_001488641.1 CDS spsG NC_009848.1 3398726 3399754 R spore coat polysaccharide biosynthesis protein SpsG complement(3398726..3399754) Bacillus pumilus SAFR-032 5622725 YP_001488642.1 CDS spsF NC_009848.1 3399751 3400491 R spore coat polysaccharide biosynthesis protein SpsF complement(3399751..3400491) Bacillus pumilus SAFR-032 5622726 YP_001488643.1 CDS spsE NC_009848.1 3400481 3401605 R sialic acid synthase; spore coat polysaccharide biosynthesis protein SpsE complement(3400481..3401605) Bacillus pumilus SAFR-032 5622727 YP_001488644.1 CDS spsD NC_009848.1 3401607 3402482 R spore coat polysaccharide biosynthesis protein SpsD complement(3401607..3402482) Bacillus pumilus SAFR-032 5622728 YP_001488645.1 CDS spsC NC_009848.1 3402479 3403657 R spore coat polysaccharide biosynthesis protein SpsC complement(3402479..3403657) Bacillus pumilus SAFR-032 5622729 YP_001488646.1 CDS spsB NC_009848.1 3403679 3405091 R spore coat polysaccharide biosynthesis protein SpsB complement(3403679..3405091) Bacillus pumilus SAFR-032 5622730 YP_001488647.1 CDS spsA NC_009848.1 3405098 3405877 R spore coat polysaccharide biosynthesis protein SpsA complement(3405098..3405877) Bacillus pumilus SAFR-032 5622731 YP_001488648.1 CDS BPUM_3437 NC_009848.1 3406044 3406718 D hypothetical protein 3406044..3406718 Bacillus pumilus SAFR-032 5622732 YP_001488649.1 CDS gerQ NC_009848.1 3406942 3407484 D YwdL; spore coat protein GerQ 3406942..3407484 Bacillus pumilus SAFR-032 5622733 YP_001488650.1 CDS BPUM_3439 NC_009848.1 3407614 3408231 D possible cupin family protein; hypothetical protein 3407614..3408231 Bacillus pumilus SAFR-032 5622734 YP_001488651.1 CDS ywdK NC_009848.1 3408272 3408643 R hypothetical protein complement(3408272..3408643) Bacillus pumilus SAFR-032 5622735 YP_001488652.1 CDS ywdJ NC_009848.1 3408714 3410021 R NCS2 family nucleobase:cation symporter-2 complement(3408714..3410021) Bacillus pumilus SAFR-032 5622736 YP_001488653.1 CDS ywdI NC_009848.1 3410055 3410387 R hypothetical protein complement(3410055..3410387) Bacillus pumilus SAFR-032 5622737 YP_001488654.1 CDS ung NC_009848.1 3411951 3412631 R Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine; uracil-DNA glycosylase complement(3411951..3412631) Bacillus pumilus SAFR-032 5622739 YP_001488655.1 CDS ywdF NC_009848.1 3412628 3413455 R glycosyltransferase complement(3412628..3413455) Bacillus pumilus SAFR-032 5622740 YP_001488656.1 CDS BPUM_3446 NC_009848.1 3413584 3413763 D hypothetical protein 3413584..3413763 Bacillus pumilus SAFR-032 5622741 YP_001488657.1 CDS BPUM_3447 NC_009848.1 3413760 3413924 D hypothetical protein 3413760..3413924 Bacillus pumilus SAFR-032 5622742 YP_001488658.1 CDS thiD NC_009848.1 3414051 3414860 D catalyzes the phosphorylation of three vitamin B6 precursors, pyridoxal, pyridoxine and pyridoxamine; pyridoxal kinase 3414051..3414860 Bacillus pumilus SAFR-032 5622743 YP_001488659.1 CDS BPUM_3449 NC_009848.1 3414906 3415982 R peptidase complement(3414906..3415982) Bacillus pumilus SAFR-032 5622744 YP_001488660.1 CDS ywdA NC_009848.1 3416131 3416469 R hypothetical protein complement(3416131..3416469) Bacillus pumilus SAFR-032 5622745 YP_001488661.1 CDS sacA NC_009848.1 3416575 3418044 R sucrose-6-phosphate hydrolase O-Glycosyl hydrolase; beta-fructofuranosidase complement(3416575..3418044) Bacillus pumilus SAFR-032 5622746 YP_001488662.1 CDS sacP NC_009848.1 3418052 3419440 R protein-N(pi)-phosphohistidine--sugar phosphotransferase; PTS family sucrose (suc) porter component IIBC complement(3418052..3419440) Bacillus pumilus SAFR-032 5622747 YP_001488663.1 CDS sacT NC_009848.1 3419695 3420528 R possible PTS family fructose/mannitol (fru) porter component II; transcriptional antiterminator complement(3419695..3420528) Bacillus pumilus SAFR-032 5622748 YP_001488664.1 CDS BPUM_3454 NC_009848.1 3420581 3420859 R hypothetical protein complement(3420581..3420859) Bacillus pumilus SAFR-032 5622749 YP_001488665.1 CDS vpr NC_009848.1 3421360 3423786 D subtilisin-like extracellular serine protease AprE; endopeptidase 3421360..3423786 Bacillus pumilus SAFR-032 5622750 YP_001488666.1 CDS BPUM_3456 NC_009848.1 3423774 3423941 R hypothetical protein complement(3423774..3423941) Bacillus pumilus SAFR-032 5622751 YP_001488667.1 CDS ywcH NC_009848.1 3424111 3425112 R flavin utilizing monoxygenase complement(3424111..3425112) Bacillus pumilus SAFR-032 5622752 YP_001488668.1 CDS nfrA NC_009848.1 3425168 3425917 R FMN-containing NADPH-linked nitro/flavin reductase; flavin reductase complement(3425168..3425917) Bacillus pumilus SAFR-032 5622753 YP_001488669.1 CDS rodA NC_009848.1 3426028 3427239 R YwcF; cell wall protein complement(3426028..3427239) Bacillus pumilus SAFR-032 5622754 YP_001488670.1 CDS ywcE NC_009848.1 3427716 3427982 D spore morphogenesis and germination protein YwcE 3427716..3427982 Bacillus pumilus SAFR-032 5622755 YP_001488671.1 CDS qoxD NC_009848.1 3428061 3428441 R cytochrome aa3 quinol oxidase subunit IV complement(3428061..3428441) Bacillus pumilus SAFR-032 5622756 YP_001488672.1 CDS qoxC NC_009848.1 3428443 3429060 R cytochrome aa3 quinol oxidase subunit III complement(3428443..3429060) Bacillus pumilus SAFR-032 5622757 YP_001488673.1 CDS qoxB NC_009848.1 3429060 3431018 R cytochrome aa3 quinol oxidase subunit I complement(3429060..3431018) Bacillus pumilus SAFR-032 5622758 YP_001488674.1 CDS qoxA NC_009848.1 3431046 3432005 R cytochrome aa3 quinol oxidase subunit II complement(3431046..3432005) Bacillus pumilus SAFR-032 5622759 YP_001488675.1 CDS BPUM_3465 NC_009848.1 3432519 3433601 R M24 family peptidase-like protein complement(3432519..3433601) Bacillus pumilus SAFR-032 5622760 YP_001488676.1 CDS galT NC_009848.1 3433606 3435126 R catalyzes the formation of alpha-D-glucose 1-phosphate and UDP-galactose from UDP-glucose and alpha-D-galactose 1-phosphate in galactose metabolism; galactose-1-phosphate uridylyltransferase complement(3433606..3435126) Bacillus pumilus SAFR-032 5622761 YP_001488677.1 CDS galE1 NC_009848.1 3435161 3436153 R cell envelope biogenesis protein; UDP-glucose 4-epimerase complement(3435161..3436153) Bacillus pumilus SAFR-032 5622762 YP_001488678.1 CDS galK NC_009848.1 3436153 3437337 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase complement(3436153..3437337) Bacillus pumilus SAFR-032 5622763 YP_001488679.1 CDS yesS NC_009848.1 3437514 3438359 D possible arabinose operon control protein; AraC family transcription regulator 3437514..3438359 Bacillus pumilus SAFR-032 5622764 YP_001488680.1 CDS BPUM_3470 NC_009848.1 3438395 3438652 R hypothetical protein complement(3438395..3438652) Bacillus pumilus SAFR-032 5622765 YP_001488681.1 CDS ywcD NC_009848.1 3438680 3439063 R GtrA family integral membrane protein complement(3438680..3439063) Bacillus pumilus SAFR-032 5622766 YP_001488682.1 CDS BPUM_3472 NC_009848.1 3439959 3440648 D O-antigen biosynthesis protein 3439959..3440648 Bacillus pumilus SAFR-032 5622767 YP_001488683.1 CDS BPUM_3473 NC_009848.1 3440641 3441309 D StrF; streptomycin biosynthesis protein 3440641..3441309 Bacillus pumilus SAFR-032 5622768 YP_001488684.1 CDS BPUM_3474 NC_009848.1 3441589 3441834 R hypothetical protein complement(3441589..3441834) Bacillus pumilus SAFR-032 5622769 YP_001488685.1 CDS rapE NC_009848.1 3441824 3442951 R aspartate phosphatase response regulator Rap40 YqcH; aspartate phosphatase response regulator complement(3441824..3442951) Bacillus pumilus SAFR-032 5622770 YP_001488686.1 CDS BPUM_3476 NC_009848.1 3443413 3443658 R hypothetical protein complement(3443413..3443658) Bacillus pumilus SAFR-032 5622771 YP_001488687.1 CDS BPUM_3477 NC_009848.1 3443692 3444360 D hypothetical protein 3443692..3444360 Bacillus pumilus SAFR-032 5622772 YP_001488688.1 CDS ywcB NC_009848.1 3444786 3445100 D hypothetical protein 3444786..3445100 Bacillus pumilus SAFR-032 5622773 YP_001488689.1 CDS ywcA NC_009848.1 3445097 3446638 D SSS family solute/sodium (Na+) symporter 3445097..3446638 Bacillus pumilus SAFR-032 5622774 YP_001488690.1 CDS BPUM_3480 NC_009848.1 3446633 3446788 R hypothetical protein complement(3446633..3446788) Bacillus pumilus SAFR-032 5622775 YP_001488691.1 CDS BPUM_3481 NC_009848.1 3447130 3447468 D hypothetical protein 3447130..3447468 Bacillus pumilus SAFR-032 5622776 YP_001488692.1 CDS BPUM_3482 NC_009848.1 3447494 3447868 R hypothetical protein complement(3447494..3447868) Bacillus pumilus SAFR-032 5622777 YP_001488693.1 CDS thiE NC_009848.1 3448003 3448671 R Condenses 4-methyl-5-(beta-hydroxyethyl)-thiazole monophosphate and 4-amino-5-hydroxymethyl pyrimidine pyrophosphate to form thiamine monophosphate; thiamine-phosphate pyrophosphorylase complement(3448003..3448671) Bacillus pumilus SAFR-032 5622778 YP_001488694.1 CDS thiM NC_009848.1 3448668 3449483 R catalyzes the formation of 4-methyl-5-(2-phosphoethyl)-thiazole and ADP from 4-methyl-5-(2-hydroxyethyl)-thiazole and ATP; hydroxyethylthiazole kinase complement(3448668..3449483) Bacillus pumilus SAFR-032 5622779 YP_001488695.1 CDS ywbI NC_009848.1 3449501 3450388 R transcriptional regulator complement(3449501..3450388) Bacillus pumilus SAFR-032 5622780 YP_001488696.1 CDS lrgA NC_009848.1 3450554 3450937 D increases the activity of extracellular murein hydrolases possibly by mediating their export via hole formation; inhibited by the antiholin-like proteins lrgAB; holin-like protein 3450554..3450937 Bacillus pumilus SAFR-032 5622781 YP_001488697.1 CDS lrgB NC_009848.1 3450931 3451611 D possible peptidoglycan hydrolase; murein hydrolase LrgB 3450931..3451611 Bacillus pumilus SAFR-032 5622782 YP_001488698.1 CDS ywbD NC_009848.1 3451649 3452830 R S-adenosylmethionine (SAM)-dependent methyltransferase complement(3451649..3452830) Bacillus pumilus SAFR-032 5622783 YP_001488699.1 CDS ywbC NC_009848.1 3452948 3453331 D glyoxalase 3452948..3453331 Bacillus pumilus SAFR-032 5622784 YP_001488700.1 CDS BPUM_3490 NC_009848.1 3453411 3454139 R glutamine ABC transporter ATP-binding protein complement(3453411..3454139) Bacillus pumilus SAFR-032 5622785 YP_001488701.1 CDS BPUM_3493 NC_009848.1 3455774 3455947 R hypothetical protein complement(3455774..3455947) Bacillus pumilus SAFR-032 5622787 YP_001488702.1 CDS rapD2 NC_009848.1 3456142 3457227 D aspartate phosphatase response regulator 3456142..3457227 Bacillus pumilus SAFR-032 5622788 YP_001488703.1 CDS ywaC NC_009848.1 3457436 3458068 R hypothetical protein complement(3457436..3458068) Bacillus pumilus SAFR-032 5622789 YP_001488704.1 CDS BPUM_3496 NC_009848.1 3458163 3459176 R possible AraH ABC superfamily ATP binding cassette transporter, membrane protein; sugar ABC transporter ATP-binding protein complement(3458163..3459176) Bacillus pumilus SAFR-032 5622790 YP_001488705.1 CDS BPUM_3497 NC_009848.1 3459173 3460669 R sugar ABC transporter ATP-binding protein complement(3459173..3460669) Bacillus pumilus SAFR-032 5622791 YP_001488706.1 CDS BPUM_3498 NC_009848.1 3460739 3461857 R sugar ABC transporter ATP-binding protein complement(3460739..3461857) Bacillus pumilus SAFR-032 5622792 YP_001488707.1 CDS BPUM_3499 NC_009848.1 3462252 3463679 R YwoF; hypothetical protein complement(3462252..3463679) Bacillus pumilus SAFR-032 5622793 YP_001488708.1 CDS ywaA NC_009848.1 3464046 3465137 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 3464046..3465137 Bacillus pumilus SAFR-032 5622794 YP_001488709.1 CDS BPUM_3501 NC_009848.1 3465242 3465430 D hypothetical protein 3465242..3465430 Bacillus pumilus SAFR-032 5622795 YP_001488710.1 CDS BPUM_3502 NC_009848.1 3465456 3465908 R hypothetical protein complement(3465456..3465908) Bacillus pumilus SAFR-032 5622796 YP_001488711.1 CDS licH2 NC_009848.1 3465973 3467301 R 6-phospho-beta-glucosidase complement(3465973..3467301) Bacillus pumilus SAFR-032 5622797 YP_001488712.1 CDS licA NC_009848.1 3467298 3467624 R protein-N(pi)-phosphohistidine--sugar phosphotransferase; PTS family oligomeric beta-glucoside porter component IIA complement(3467298..3467624) Bacillus pumilus SAFR-032 5622798 YP_001488713.1 CDS licC NC_009848.1 3467651 3469000 R PTS family oligomeric beta-glucoside porter component IIC complement(3467651..3469000) Bacillus pumilus SAFR-032 5622799 YP_001488714.1 CDS licB NC_009848.1 3469015 3469320 R protein-N(pi)-phosphohistidine--sugar phosphotransferase; PTS family oligomeric beta-glucoside porter component IIB complement(3469015..3469320) Bacillus pumilus SAFR-032 5622800 YP_001488715.1 CDS BPUM_3507 NC_009848.1 3469440 3471386 R transcription antiterminator BglG complement(3469440..3471386) Bacillus pumilus SAFR-032 5622801 YP_001488716.1 CDS BPUM_3508 NC_009848.1 3471624 3472238 R C60 family sortase A complement(3471624..3472238) Bacillus pumilus SAFR-032 5622802 YP_001488717.1 CDS BPUM_3509 NC_009848.1 3472308 3473690 R hypothetical protein complement(3472308..3473690) Bacillus pumilus SAFR-032 5622803 YP_001488718.1 CDS yxzF NC_009848.1 3473816 3473929 R hypothetical protein complement(3473816..3473929) Bacillus pumilus SAFR-032 5622804 YP_001488719.1 CDS gdhA NC_009848.1 3474013 3475383 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(3474013..3475383) Bacillus pumilus SAFR-032 5622805 YP_001488720.1 CDS yxlD NC_009848.1 3475698 3475910 R hypothetical protein complement(3475698..3475910) Bacillus pumilus SAFR-032 5622806 YP_001488721.1 CDS yxlC NC_009848.1 3475907 3476218 R hypothetical protein complement(3475907..3476218) Bacillus pumilus SAFR-032 5622807 YP_001488722.1 CDS sigY NC_009848.1 3476218 3476748 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor SigY complement(3476218..3476748) Bacillus pumilus SAFR-032 5622808 YP_001488723.1 CDS pelB NC_009848.1 3477232 3478260 D pectate lyase 3477232..3478260 Bacillus pumilus SAFR-032 5622809 YP_001488724.1 CDS cydD NC_009848.1 3478318 3480051 R ABC transporter ATP-binding protein complement(3478318..3480051) Bacillus pumilus SAFR-032 5622810 YP_001488725.1 CDS cydC NC_009848.1 3480041 3481777 R ABC transporter ATP-binding protein complement(3480041..3481777) Bacillus pumilus SAFR-032 5622811 YP_001488726.1 CDS cydB NC_009848.1 3481777 3482793 R cytochrome bd ubiquinol oxidase subunit II complement(3481777..3482793) Bacillus pumilus SAFR-032 5622812 YP_001488727.1 CDS cydA NC_009848.1 3482780 3484195 R cytochrome bd ubiquinol oxidase subunit I complement(3482780..3484195) Bacillus pumilus SAFR-032 5622813 YP_001488728.1 CDS BPUM_3520 NC_009848.1 3484527 3485648 R iron ABC transporter ATP-binding protein complement(3484527..3485648) Bacillus pumilus SAFR-032 5622814 YP_001488729.1 CDS BPUM_3521 NC_009848.1 3485650 3486663 R iron ABC transporter membrane protein complement(3485650..3486663) Bacillus pumilus SAFR-032 5622815 YP_001488730.1 CDS BPUM_3522 NC_009848.1 3486660 3487598 R iron ABC transporter binding protein complement(3486660..3487598) Bacillus pumilus SAFR-032 5622816 YP_001488731.1 CDS BPUM_3523 NC_009848.1 3487617 3488369 R C60 family sortase B complement(3487617..3488369) Bacillus pumilus SAFR-032 5622817 YP_001488732.1 CDS BPUM_3524 NC_009848.1 3488396 3489166 R iron ABC transporter ATP-binding protein complement(3488396..3489166) Bacillus pumilus SAFR-032 5622818 YP_001488733.1 CDS BPUM_3525 NC_009848.1 3489153 3490139 R iron ABC transporter membrane protein complement(3489153..3490139) Bacillus pumilus SAFR-032 5622819 YP_001488734.1 CDS BPUM_3526 NC_009848.1 3490173 3491060 R iron ABC transporter binding protein complement(3490173..3491060) Bacillus pumilus SAFR-032 5622820 YP_001488735.1 CDS BPUM_3529 NC_009848.1 3494480 3494812 R hypothetical protein complement(3494480..3494812) Bacillus pumilus SAFR-032 5622823 YP_001488736.1 CDS BPUM_3530 NC_009848.1 3494988 3495881 D glyoxalase family protein 3494988..3495881 Bacillus pumilus SAFR-032 5622824 YP_001488737.1 CDS ribAB NC_009848.1 3495859 3496620 D bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II 3495859..3496620 Bacillus pumilus SAFR-032 5622825 YP_001488738.1 CDS ribD1 NC_009848.1 3496607 3497698 D bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 3496607..3497698 Bacillus pumilus SAFR-032 5622826 YP_001488739.1 CDS BPUM_3534 NC_009848.1 3498161 3498316 D hypothetical protein 3498161..3498316 Bacillus pumilus SAFR-032 5622828 YP_001488740.1 CDS yxkH NC_009848.1 3498932 3499792 R polysaccharide deacetylase complement(3498932..3499792) Bacillus pumilus SAFR-032 5622829 YP_001488741.1 CDS ptcA NC_009848.1 3499858 3500202 R PTS system cellobiose transporter subunit IIA complement(3499858..3500202) Bacillus pumilus SAFR-032 5622830 YP_001488742.1 CDS BPUM_3537 NC_009848.1 3500207 3500530 R PTS family cellobiose porter component IIB complement(3500207..3500530) Bacillus pumilus SAFR-032 5622831 YP_001488743.1 CDS BPUM_3538 NC_009848.1 3500543 3501976 R YdhP; beta-glucosidase complement(3500543..3501976) Bacillus pumilus SAFR-032 5622832 YP_001488744.1 CDS BPUM_3540 NC_009848.1 3502546 3503856 R PTS system transporter subunit IIC complement(3502546..3503856) Bacillus pumilus SAFR-032 5622834 YP_001488745.1 CDS BPUM_3541 NC_009848.1 3503946 3505904 R possible LicABCH operon regulator CelR; transcriptional regulator complement(3503946..3505904) Bacillus pumilus SAFR-032 5622835 YP_001488746.1 CDS BPUM_3542 NC_009848.1 3506011 3506256 D hypothetical protein 3506011..3506256 Bacillus pumilus SAFR-032 5622836 YP_001488747.1 CDS BPUM_3543 NC_009848.1 3506301 3506726 R hypothetical protein complement(3506301..3506726) Bacillus pumilus SAFR-032 5622837 YP_001488748.1 CDS ywqIA NC_009848.1 3507009 3507272 R hypothetical protein complement(3507009..3507272) Bacillus pumilus SAFR-032 5622838 YP_001488749.1 CDS BPUM_3545 NC_009848.1 3507310 3507735 R hypothetical protein complement(3507310..3507735) Bacillus pumilus SAFR-032 5622839 YP_001488750.1 CDS mleN NC_009848.1 3508034 3509443 R NhaC family H(+)/lactate-Na(+) antiporter complement(3508034..3509443) Bacillus pumilus SAFR-032 5622840 YP_001488751.1 CDS ansB2 NC_009848.1 3509587 3511008 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(3509587..3511008) Bacillus pumilus SAFR-032 5622841 YP_001488752.1 CDS ansA NC_009848.1 3511037 3512026 R asparaginase complement(3511037..3512026) Bacillus pumilus SAFR-032 5622842 YP_001488753.1 CDS ansR NC_009848.1 3512234 3512581 D ans operon repressor protein; transcriptional regulator 3512234..3512581 Bacillus pumilus SAFR-032 5622843 YP_001488754.1 CDS BPUM_3550 NC_009848.1 3512635 3513102 R helix-turn-helix domain protein; DNA-binding protein complement(3512635..3513102) Bacillus pumilus SAFR-032 5622844 YP_001488755.1 CDS yfjD NC_009848.1 3513201 3513728 R hypothetical protein complement(3513201..3513728) Bacillus pumilus SAFR-032 5622845 YP_001488756.1 CDS yfjC NC_009848.1 3513750 3514508 R hypothetical protein complement(3513750..3514508) Bacillus pumilus SAFR-032 5622846 YP_001488757.1 CDS yfjB NC_009848.1 3514521 3515717 R hypothetical protein complement(3514521..3515717) Bacillus pumilus SAFR-032 5622847 YP_001488758.1 CDS yfjA NC_009848.1 3515722 3516054 R hypothetical protein complement(3515722..3516054) Bacillus pumilus SAFR-032 5622848 YP_001488759.1 CDS pepT NC_009848.1 3516272 3517504 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 3516272..3517504 Bacillus pumilus SAFR-032 5622849 YP_001488760.1 CDS BPUM_3556 NC_009848.1 3517778 3517972 D hypothetical protein 3517778..3517972 Bacillus pumilus SAFR-032 5622850 YP_001488761.1 CDS BPUM_3557 NC_009848.1 3518057 3518749 R hypothetical protein complement(3518057..3518749) Bacillus pumilus SAFR-032 5622851 YP_001488762.1 CDS BPUM_3558 NC_009848.1 3518896 3519756 D transcriptional regulator 3518896..3519756 Bacillus pumilus SAFR-032 5622852 YP_001488763.1 CDS garR NC_009848.1 3519955 3520848 D catalyzes the reduction of tartronate semialdehyde to glycerate; tartronate semialdehyde reductase 3519955..3520848 Bacillus pumilus SAFR-032 5622853 YP_001488764.1 CDS BPUM_3560 NC_009848.1 3520850 3522277 D hypothetical protein 3520850..3522277 Bacillus pumilus SAFR-032 5622854 YP_001488765.1 CDS BPUM_3561 NC_009848.1 3522329 3523648 D GntP family gluconate:proton (H+) symporter 3522329..3523648 Bacillus pumilus SAFR-032 5622855 YP_001488766.1 CDS BPUM_3562 NC_009848.1 3523929 3525050 D YxjG; hypothetical protein 3523929..3525050 Bacillus pumilus SAFR-032 5622856 YP_001488767.1 CDS BPUM_3563 NC_009848.1 3525317 3526432 R hypothetical protein complement(3525317..3526432) Bacillus pumilus SAFR-032 5622857 YP_001488768.1 CDS mglA NC_009848.1 3526429 3527082 R ABC transporter ATP-binding protein complement(3526429..3527082) Bacillus pumilus SAFR-032 5622858 YP_001488769.1 CDS bglH NC_009848.1 3527444 3528880 R beta-glucosidase complement(3527444..3528880) Bacillus pumilus SAFR-032 5622859 YP_001488770.1 CDS BPUM_3566 NC_009848.1 3528834 3530741 R PTS family glucose/glucoside (glc) porter component IIABC complement(3528834..3530741) Bacillus pumilus SAFR-032 5622860 YP_001488771.1 CDS licT1 NC_009848.1 3531069 3531902 R transcription antiterminator complement(3531069..3531902) Bacillus pumilus SAFR-032 5622861 YP_001488772.1 CDS BPUM_3568 NC_009848.1 3532189 3533544 D transposase 3532189..3533544 Bacillus pumilus SAFR-032 5622862 YP_001488773.1 CDS ywqG NC_009848.1 3533664 3534479 R hypothetical protein complement(3533664..3534479) Bacillus pumilus SAFR-032 5622863 YP_001488774.1 CDS BPUM_3570 NC_009848.1 3534653 3535492 R chemotaxis sensory transducer protein complement(3534653..3535492) Bacillus pumilus SAFR-032 5622864 YP_001488775.1 CDS ykoC NC_009848.1 3535645 3536379 R cobalt ABC transporter complement(3535645..3536379) Bacillus pumilus SAFR-032 5622865 YP_001488776.1 CDS BPUM_3572 NC_009848.1 3536369 3537967 R ABC transporter ATP-binding protein complement(3536369..3537967) Bacillus pumilus SAFR-032 5622866 YP_001488777.1 CDS ykoE NC_009848.1 3537942 3538541 R ABC transporter ATP-binding protein complement(3537942..3538541) Bacillus pumilus SAFR-032 5622867 YP_001488778.1 CDS BPUM_3574 NC_009848.1 3538538 3539224 R thiaminase complement(3538538..3539224) Bacillus pumilus SAFR-032 5622868 YP_001488779.1 CDS BPUM_3575 NC_009848.1 3539472 3540599 R hypothetical protein complement(3539472..3540599) Bacillus pumilus SAFR-032 5622869 YP_001488780.1 CDS yraA NC_009848.1 3540741 3541397 R C56 family peptidase complement(3540741..3541397) Bacillus pumilus SAFR-032 5622870 YP_001488781.1 CDS BPUM_3577 NC_009848.1 3541652 3541816 D hypothetical protein 3541652..3541816 Bacillus pumilus SAFR-032 5622871 YP_001488782.1 CDS BPUM_3578 NC_009848.1 3541851 3542222 R hypothetical protein complement(3541851..3542222) Bacillus pumilus SAFR-032 5622872 YP_001488783.1 CDS BPUM_3579 NC_009848.1 3542228 3542482 R hypothetical protein complement(3542228..3542482) Bacillus pumilus SAFR-032 5622873 YP_001488784.1 CDS BPUM_3580 NC_009848.1 3542690 3545071 R M6 family metalloendopeptidase complement(3542690..3545071) Bacillus pumilus SAFR-032 5622874 YP_001488785.1 CDS ycnE NC_009848.1 3545261 3545554 R possible antibiotic biosynthesis monooxygenase; hypothetical protein complement(3545261..3545554) Bacillus pumilus SAFR-032 5622875 YP_001488786.1 CDS ydgI NC_009848.1 3545580 3546218 R NAD(P)H nitroreductase complement(3545580..3546218) Bacillus pumilus SAFR-032 5622876 YP_001488787.1 CDS ydgJ NC_009848.1 3546233 3546676 R MarR family transcriptional regulator complement(3546233..3546676) Bacillus pumilus SAFR-032 5622877 YP_001488788.1 CDS BPUM_3584 NC_009848.1 3546704 3546859 D hypothetical protein 3546704..3546859 Bacillus pumilus SAFR-032 5622878 YP_001488789.1 CDS pdp NC_009848.1 3546884 3548185 R Catalyzes the reversible phosphorolysis of pyrimidines in the nucleotide synthesis salvage pathway; pyrimidine-nucleoside phosphorylase complement(3546884..3548185) Bacillus pumilus SAFR-032 5622879 YP_001488790.1 CDS nupC NC_009848.1 3548211 3549392 R CNT family concentrative nucleoside transporter complement(3548211..3549392) Bacillus pumilus SAFR-032 5622880 YP_001488791.1 CDS deoC NC_009848.1 3549559 3550230 R Dra; deoxyribose-phosphate aldolase complement(3549559..3550230) Bacillus pumilus SAFR-032 5622881 YP_001488792.1 CDS deoR NC_009848.1 3550314 3551258 R YxxC; DeoR family transcriptional regulator complement(3550314..3551258) Bacillus pumilus SAFR-032 5622882 YP_001488793.1 CDS BPUM_3589 NC_009848.1 3551319 3552329 R aldose 1-epimerase complement(3551319..3552329) Bacillus pumilus SAFR-032 5622883 YP_001488794.1 CDS yrhL NC_009848.1 3552436 3554259 D acyltransferase 3552436..3554259 Bacillus pumilus SAFR-032 5622884 YP_001488795.1 CDS ydeG NC_009848.1 3554398 3555669 R major facilitator superfamily transporter complement(3554398..3555669) Bacillus pumilus SAFR-032 5622885 YP_001488796.1 CDS BPUM_3592 NC_009848.1 3555914 3557011 R hypothetical protein complement(3555914..3557011) Bacillus pumilus SAFR-032 5622886 YP_001488797.1 CDS BPUM_3593 NC_009848.1 3557008 3557715 R possible UbiE family methyltransferase; SAM-dependent methyltransferase complement(3557008..3557715) Bacillus pumilus SAFR-032 5622887 YP_001488798.1 CDS BPUM_3594 NC_009848.1 3557845 3558852 D LuxR family transcriptional regulator 3557845..3558852 Bacillus pumilus SAFR-032 5622888 YP_001488799.1 CDS yxeH NC_009848.1 3559094 3559906 R possible HAD superfamily hydrolase; HAD family hydrolase complement(3559094..3559906) Bacillus pumilus SAFR-032 5622889 YP_001488800.1 CDS yyaN NC_009848.1 3560216 3560575 D transcriptional regulator 3560216..3560575 Bacillus pumilus SAFR-032 5622890 YP_001488801.1 CDS BPUM_3597 NC_009848.1 3560685 3561701 D YulF; dehydrogenase 3560685..3561701 Bacillus pumilus SAFR-032 5622891 YP_001488802.1 CDS BPUM_3598 NC_009848.1 3561744 3563258 R sensor histidine kinase complement(3561744..3563258) Bacillus pumilus SAFR-032 5622892 YP_001488803.1 CDS BPUM_3599 NC_009848.1 3563578 3564915 D amino acid APC transporter 3563578..3564915 Bacillus pumilus SAFR-032 5622893 YP_001488804.1 CDS yhaZ NC_009848.1 3564949 3566055 R DNA alkylation repair protein complement(3564949..3566055) Bacillus pumilus SAFR-032 5622894 YP_001488805.1 CDS BPUM_3601 NC_009848.1 3566146 3567474 R GntP family gluconate:proton (H+) symporter complement(3566146..3567474) Bacillus pumilus SAFR-032 5622895 YP_001488806.1 CDS gntK NC_009848.1 3567499 3569043 R gluconokinase complement(3567499..3569043) Bacillus pumilus SAFR-032 5622896 YP_001488807.1 CDS ybbH NC_009848.1 3569228 3570085 R transcriptional regulator complement(3569228..3570085) Bacillus pumilus SAFR-032 5622897 YP_001488808.1 CDS BPUM_3604 NC_009848.1 3570177 3571112 R purine nucleosidase complement(3570177..3571112) Bacillus pumilus SAFR-032 5622898 YP_001488809.1 CDS BPUM_3605 NC_009848.1 3571207 3571689 R hypothetical protein complement(3571207..3571689) Bacillus pumilus SAFR-032 5622899 YP_001488810.1 CDS BPUM_3606 NC_009848.1 3571772 3572254 R hypothetical protein complement(3571772..3572254) Bacillus pumilus SAFR-032 5622900 YP_001488811.1 CDS BPUM_3607 NC_009848.1 3572338 3572835 R hypothetical protein complement(3572338..3572835) Bacillus pumilus SAFR-032 5622901 YP_001488812.1 CDS BPUM_3608 NC_009848.1 3572960 3574450 D hypothetical protein 3572960..3574450 Bacillus pumilus SAFR-032 5622902 YP_001488813.1 CDS BPUM_3609 NC_009848.1 3574463 3574873 D hypothetical protein 3574463..3574873 Bacillus pumilus SAFR-032 5622903 YP_001488814.1 CDS BPUM_3610 NC_009848.1 3574956 3576632 D hypothetical protein 3574956..3576632 Bacillus pumilus SAFR-032 5622904 YP_001488815.1 CDS ywfK NC_009848.1 3576648 3577547 R LysR family transcriptional regulator complement(3576648..3577547) Bacillus pumilus SAFR-032 5622905 YP_001488816.1 CDS lacR NC_009848.1 3577720 3578715 D LacI family transcriptional regulator LacR 3577720..3578715 Bacillus pumilus SAFR-032 5622906 YP_001488817.1 CDS cycB NC_009848.1 3578886 3580151 D YvfK; cyclodextrin ABC transporter binding protein 3578886..3580151 Bacillus pumilus SAFR-032 5622907 YP_001488818.1 CDS yvfL NC_009848.1 3580290 3581528 D cyclodextrin ABC transporter membrane protein 3580290..3581528 Bacillus pumilus SAFR-032 5622908 YP_001488819.1 CDS yvfM NC_009848.1 3581530 3582372 D cyclodextrin ABC transporter membrane protein 3581530..3582372 Bacillus pumilus SAFR-032 5622909 YP_001488820.1 CDS yvfO NC_009848.1 3582384 3583592 D arabinogalactan endo-1,4-beta-galactosidase 3582384..3583592 Bacillus pumilus SAFR-032 5622910 YP_001488821.1 CDS lacA NC_009848.1 3583616 3585682 D beta-galactosidase 3583616..3585682 Bacillus pumilus SAFR-032 5622911 YP_001488822.1 CDS BPUM_3618 NC_009848.1 3585981 3587309 D CitMHS family citrate-divalent cation:proton (H+) symporter 3585981..3587309 Bacillus pumilus SAFR-032 5622912 YP_001488823.1 CDS BPUM_3619 NC_009848.1 3587351 3587779 R hypothetical protein complement(3587351..3587779) Bacillus pumilus SAFR-032 5622913 YP_001488824.1 CDS yhcI NC_009848.1 3587807 3588760 R ABC transporter ATP-binding protein complement(3587807..3588760) Bacillus pumilus SAFR-032 5622914 YP_001488825.1 CDS yhcH NC_009848.1 3588757 3589686 R spore transporter YhcH; ABC transporter ATP-binding protein complement(3588757..3589686) Bacillus pumilus SAFR-032 5622915 YP_001488826.1 CDS BPUM_3622 NC_009848.1 3589877 3590797 R ABC transporter ATP-binding protein complement(3589877..3590797) Bacillus pumilus SAFR-032 5622916 YP_001488827.1 CDS BPUM_3623 NC_009848.1 3590800 3591693 R ABC transporter ATP-binding protein complement(3590800..3591693) Bacillus pumilus SAFR-032 5622917 YP_001488828.1 CDS BPUM_3624 NC_009848.1 3591686 3592036 R response regulator complement(3591686..3592036) Bacillus pumilus SAFR-032 5622918 YP_001488829.1 CDS BPUM_3625 NC_009848.1 3592046 3592567 R hypothetical protein complement(3592046..3592567) Bacillus pumilus SAFR-032 5622919 YP_001488830.1 CDS BPUM_3626 NC_009848.1 3592570 3593094 R hypothetical protein complement(3592570..3593094) Bacillus pumilus SAFR-032 5622920 YP_001488831.1 CDS BPUM_3627 NC_009848.1 3593113 3593334 R hypothetical protein complement(3593113..3593334) Bacillus pumilus SAFR-032 5622921 YP_001488832.1 CDS BPUM_3628 NC_009848.1 3593574 3593858 D hypothetical protein 3593574..3593858 Bacillus pumilus SAFR-032 5622922 YP_001488833.1 CDS phnA NC_009848.1 3594054 3594392 R alkylphosphonate uptake protein complement(3594054..3594392) Bacillus pumilus SAFR-032 5622923 YP_001488834.1 CDS glxK NC_009848.1 3594485 3595624 R YxaA; glycerate kinase complement(3594485..3595624) Bacillus pumilus SAFR-032 5622924 YP_001488835.1 CDS yojA NC_009848.1 3595656 3596942 R GntP family gluconate:proton (H+) symporter complement(3595656..3596942) Bacillus pumilus SAFR-032 5622925 YP_001488836.1 CDS ysfB NC_009848.1 3597045 3598157 R possible transcriptional regulator CdaR; sugar diacid utilization regulator complement(3597045..3598157) Bacillus pumilus SAFR-032 5622926 YP_001488837.1 CDS ydgC NC_009848.1 3598319 3598969 D AcrR family transcriptional regulator; TetR family transcriptional regulator 3598319..3598969 Bacillus pumilus SAFR-032 5622927 YP_001488838.1 CDS BPUM_3634 NC_009848.1 3599030 3600292 D major facilitator superfamily macrolide:cation symporter (or antiporter or uniporter) 3599030..3600292 Bacillus pumilus SAFR-032 5622928 YP_001488839.1 CDS BPUM_3635 NC_009848.1 3600289 3602616 D ABC transporter ATP-binding protein 3600289..3602616 Bacillus pumilus SAFR-032 5622929 YP_001488840.1 CDS BPUM_3636 NC_009848.1 3602621 3603391 D ABC transporter ATP-binding protein 3602621..3603391 Bacillus pumilus SAFR-032 5622930 YP_001488841.1 CDS BPUM_3637 NC_009848.1 3603423 3603635 R hypothetical protein complement(3603423..3603635) Bacillus pumilus SAFR-032 5622931 YP_001488842.1 CDS BPUM_3638 NC_009848.1 3604335 3604529 D hypothetical protein 3604335..3604529 Bacillus pumilus SAFR-032 5622932 YP_001488843.1 CDS BPUM_3639 NC_009848.1 3604540 3605283 D hypothetical protein 3604540..3605283 Bacillus pumilus SAFR-032 5622933 YP_001488844.1 CDS BPUM_3640 NC_009848.1 3605471 3605659 R hypothetical protein complement(3605471..3605659) Bacillus pumilus SAFR-032 5622934 YP_001488845.1 CDS rapK NC_009848.1 3606160 3607338 D aspartate phosphatase response regulator K 3606160..3607338 Bacillus pumilus SAFR-032 5622935 YP_001488846.1 CDS licT2 NC_009848.1 3607438 3608286 R transcription antiterminator complement(3607438..3608286) Bacillus pumilus SAFR-032 5622936 YP_001488847.1 CDS BPUM_3643 NC_009848.1 3608317 3609783 R beta-glucosidase complement(3608317..3609783) Bacillus pumilus SAFR-032 5622937 YP_001488848.1 CDS BPUM_3644 NC_009848.1 3609788 3611647 R protein-N(pi)-phosphohistidine--sugar phosphotransferase SytA; PTS family beta-glucoside (glc) porter component IIBCA complement(3609788..3611647) Bacillus pumilus SAFR-032 5622938 YP_001488849.1 CDS BPUM_3645 NC_009848.1 3611995 3612960 R hypothetical protein complement(3611995..3612960) Bacillus pumilus SAFR-032 5622939 YP_001488850.1 CDS BPUM_3646 NC_009848.1 3612989 3613882 R hypothetical protein complement(3612989..3613882) Bacillus pumilus SAFR-032 5622940 YP_001488851.1 CDS BPUM_3647 NC_009848.1 3614062 3614613 D transcriptional regulator 3614062..3614613 Bacillus pumilus SAFR-032 5622941 YP_001488852.1 CDS BPUM_3648 NC_009848.1 3614618 3615100 D hypothetical protein 3614618..3615100 Bacillus pumilus SAFR-032 5622942 YP_001488853.1 CDS BPUM_3649 NC_009848.1 3615112 3615735 R nucleoside diphosphate hydrolase complement(3615112..3615735) Bacillus pumilus SAFR-032 5622943 YP_001488854.1 CDS BPUM_3650 NC_009848.1 3615906 3616112 D transcriptional regulator 3615906..3616112 Bacillus pumilus SAFR-032 5622944 YP_001488855.1 CDS BPUM_3651 NC_009848.1 3616109 3616789 D hypothetical protein 3616109..3616789 Bacillus pumilus SAFR-032 5622945 YP_001488856.1 CDS aapA NC_009848.1 3616838 3618184 R AnsP YdgF; APC family amino acid-polyamine-organocation transporter complement(3616838..3618184) Bacillus pumilus SAFR-032 5622946 YP_001488857.1 CDS degA NC_009848.1 3618691 3619713 D PurR; LacI family transcriptional regulator 3618691..3619713 Bacillus pumilus SAFR-032 5622947 YP_001488858.1 CDS BPUM_3654 NC_009848.1 3619710 3620006 D hypothetical protein 3619710..3620006 Bacillus pumilus SAFR-032 5622948 YP_001488859.1 CDS yfkL1 NC_009848.1 3620158 3621339 D major facilitator superfamily transporter 3620158..3621339 Bacillus pumilus SAFR-032 5622949 YP_001488860.1 CDS BPUM_3656 NC_009848.1 3621358 3622260 D shikimate dehydrogenase 3621358..3622260 Bacillus pumilus SAFR-032 5622950 YP_001488861.1 CDS yfkL2 NC_009848.1 3622489 3623682 R major facilitator superfamily transporter complement(3622489..3623682) Bacillus pumilus SAFR-032 5622951 YP_001488862.1 CDS BPUM_3658 NC_009848.1 3624015 3624629 R hypothetical protein complement(3624015..3624629) Bacillus pumilus SAFR-032 5622952 YP_001488863.1 CDS BPUM_3659 NC_009848.1 3625067 3626302 R tellurium resistance protein complement(3625067..3626302) Bacillus pumilus SAFR-032 5622953 YP_001488864.1 CDS BPUM_3660 NC_009848.1 3626464 3626625 D hypothetical protein 3626464..3626625 Bacillus pumilus SAFR-032 5622954 YP_001488865.1 CDS BPUM_3661 NC_009848.1 3626630 3627610 R hypothetical protein complement(3626630..3627610) Bacillus pumilus SAFR-032 5622955 YP_001488866.1 CDS bglA NC_009848.1 3627766 3629202 R 6-phospho-beta-glucosidase complement(3627766..3629202) Bacillus pumilus SAFR-032 5622956 YP_001488867.1 CDS yydK NC_009848.1 3629391 3630101 D PhnF; transcriptional regulator 3629391..3630101 Bacillus pumilus SAFR-032 5622957 YP_001488868.1 CDS BPUM_3664 NC_009848.1 3630151 3631161 R hypothetical protein complement(3630151..3631161) Bacillus pumilus SAFR-032 5622958 YP_001488869.1 CDS BPUM_3665 NC_009848.1 3631243 3633354 R hypothetical protein complement(3631243..3633354) Bacillus pumilus SAFR-032 5622959 YP_001488870.1 CDS BPUM_3666 NC_009848.1 3633667 3634563 D phenazine biosynthesis protein 3633667..3634563 Bacillus pumilus SAFR-032 5622960 YP_001488871.1 CDS yvbU NC_009848.1 3634607 3635479 R LysR family transcriptional regulator complement(3634607..3635479) Bacillus pumilus SAFR-032 5622961 YP_001488872.1 CDS yxjI NC_009848.1 3635485 3635994 R hypothetical protein complement(3635485..3635994) Bacillus pumilus SAFR-032 5622962 YP_001488873.1 CDS BPUM_3669 NC_009848.1 3636100 3636345 R hypothetical protein complement(3636100..3636345) Bacillus pumilus SAFR-032 5622963 YP_001488874.1 CDS BPUM_3670 NC_009848.1 3636512 3637057 R hypothetical protein complement(3636512..3637057) Bacillus pumilus SAFR-032 5622964 YP_001488875.1 CDS BPUM_3671 NC_009848.1 3637140 3637406 D hypothetical protein 3637140..3637406 Bacillus pumilus SAFR-032 5622965 YP_001488876.1 CDS BPUM_3672 NC_009848.1 3637403 3637663 D hypothetical protein 3637403..3637663 Bacillus pumilus SAFR-032 5622966 YP_001488877.1 CDS BPUM_3673 NC_009848.1 3637721 3638569 R Zn-dependent hydrolase complement(3637721..3638569) Bacillus pumilus SAFR-032 5622967 YP_001488878.1 CDS BPUM_3674 NC_009848.1 3638676 3641123 R DNA helicase complement(3638676..3641123) Bacillus pumilus SAFR-032 5622968 YP_001488879.1 CDS BPUM_3675 NC_009848.1 3641133 3641894 R hypothetical protein complement(3641133..3641894) Bacillus pumilus SAFR-032 5622969 YP_001488880.1 CDS yydA NC_009848.1 3642589 3643068 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(3642589..3643068) Bacillus pumilus SAFR-032 5622970 YP_001488881.1 CDS cbiQ NC_009848.1 3643481 3644311 R YbaF; cobalt ABC transporter complement(3643481..3644311) Bacillus pumilus SAFR-032 5622971 YP_001488882.1 CDS ykoD NC_009848.1 3644302 3646017 R cobalt ABC transporter ATP-binding protein complement(3644302..3646017) Bacillus pumilus SAFR-032 5622972 YP_001488883.1 CDS BPUM_3679 NC_009848.1 3646037 3646594 R hypothetical protein complement(3646037..3646594) Bacillus pumilus SAFR-032 5622973 YP_001488884.1 CDS BPUM_3680 NC_009848.1 3646609 3647469 R hypothetical protein complement(3646609..3647469) Bacillus pumilus SAFR-032 5622974 YP_001488885.1 CDS BPUM_3681 NC_009848.1 3648043 3648732 D hypothetical protein 3648043..3648732 Bacillus pumilus SAFR-032 5622975 YP_001488886.1 CDS BPUM_3682 NC_009848.1 3648733 3649614 D multidrug ABC transporter ATP-binding protein 3648733..3649614 Bacillus pumilus SAFR-032 5622976 YP_001488887.1 CDS yycN NC_009848.1 3649654 3650190 R GNAT family acetyltransferase complement(3649654..3650190) Bacillus pumilus SAFR-032 5622977 YP_001488888.1 CDS yyxA NC_009848.1 3650187 3651374 R YycK; peptidase complement(3650187..3651374) Bacillus pumilus SAFR-032 5622978 YP_001488889.1 CDS yycJ NC_009848.1 3651456 3652250 R metallo-beta-lactamase family protein complement(3651456..3652250) Bacillus pumilus SAFR-032 5622979 YP_001488890.1 CDS yycI NC_009848.1 3652257 3653120 R hypothetical protein complement(3652257..3653120) Bacillus pumilus SAFR-032 5622980 YP_001488891.1 CDS yycH NC_009848.1 3653107 3654495 R hypothetical protein complement(3653107..3654495) Bacillus pumilus SAFR-032 5622981 YP_001488892.1 CDS yycG NC_009848.1 3654476 3656314 R sensor histidine kinase complement(3654476..3656314) Bacillus pumilus SAFR-032 5622982 YP_001488893.1 CDS yycF NC_009848.1 3656322 3657029 R response regulator complement(3656322..3657029) Bacillus pumilus SAFR-032 5622983 YP_001488894.1 CDS BPUM_3690 NC_009848.1 3658119 3658643 D peroxiredoxin 3658119..3658643 Bacillus pumilus SAFR-032 5622988 YP_001488895.1 CDS BPUM_3691 NC_009848.1 3658874 3659083 R hypothetical protein complement(3658874..3659083) Bacillus pumilus SAFR-032 5622989 YP_001488896.1 CDS BPUM_3692 NC_009848.1 3659099 3660232 R hypothetical protein complement(3659099..3660232) Bacillus pumilus SAFR-032 5622990 YP_001488897.1 CDS purA NC_009848.1 3660369 3661658 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(3660369..3661658) Bacillus pumilus SAFR-032 5622991 YP_001488898.1 CDS BPUM_3694 NC_009848.1 3661875 3662486 R TetR family transcriptional regulator complement(3661875..3662486) Bacillus pumilus SAFR-032 5622992 YP_001488899.1 CDS BPUM_3695 NC_009848.1 3662593 3663798 D YjiB; cytochrome P450 3662593..3663798 Bacillus pumilus SAFR-032 5622993 YP_001488900.1 CDS yycE NC_009848.1 3663829 3664242 R possible glyoxalase; hypothetical protein complement(3663829..3664242) Bacillus pumilus SAFR-032 5622994 YP_001488901.1 CDS dnaC NC_009848.1 3664372 3665736 R unwinds double stranded DNA; replicative DNA helicase complement(3664372..3665736) Bacillus pumilus SAFR-032 5622995 YP_001488902.1 CDS ybdO NC_009848.1 3665947 3666912 R hypothetical protein complement(3665947..3666912) Bacillus pumilus SAFR-032 5622996 YP_001488903.1 CDS ybdN NC_009848.1 3667022 3667879 D hypothetical protein 3667022..3667879 Bacillus pumilus SAFR-032 5622997 YP_001488904.1 CDS ybbB NC_009848.1 3668226 3669842 D AraC family transcription regulator 3668226..3669842 Bacillus pumilus SAFR-032 5622998 YP_001488905.1 CDS feuA NC_009848.1 3669941 3670912 D iron-binding ABC transporter ATP-binding protein 3669941..3670912 Bacillus pumilus SAFR-032 5622999 YP_001488906.1 CDS ybbA NC_009848.1 3670959 3671690 D esterase 3670959..3671690 Bacillus pumilus SAFR-032 5623000 YP_001488907.1 CDS yycC NC_009848.1 3671757 3671927 D hypothetical protein 3671757..3671927 Bacillus pumilus SAFR-032 5623001 YP_001488908.1 CDS BPUM_3704 NC_009848.1 3671949 3673157 D YycB; major facilitator superfamily transporter 3671949..3673157 Bacillus pumilus SAFR-032 5623002 YP_001488909.1 CDS rplI NC_009848.1 3673203 3673652 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(3673203..3673652) Bacillus pumilus SAFR-032 5623003 YP_001488910.1 CDS yybT NC_009848.1 3673649 3675637 R DHH family phosphoesterase complement(3673649..3675637) Bacillus pumilus SAFR-032 5623004 YP_001488911.1 CDS yybS NC_009848.1 3675659 3676615 R hypothetical protein complement(3675659..3676615) Bacillus pumilus SAFR-032 5623005 YP_001488912.1 CDS ppaC NC_009848.1 3676900 3677826 D catalyzes the hydrolysis of pyrophosphate to phosphate; putative manganese-dependent inorganic pyrophosphatase 3676900..3677826 Bacillus pumilus SAFR-032 5623006 YP_001488913.1 CDS yrhM NC_009848.1 3677874 3678731 R anti-SigV factor complement(3677874..3678731) Bacillus pumilus SAFR-032 5623007 YP_001488914.1 CDS sigV NC_009848.1 3678732 3679226 R ECF family DNA-directed RNA polymerase sigma subunit SigV complement(3678732..3679226) Bacillus pumilus SAFR-032 5623008 YP_001488915.1 CDS BPUM_3711 NC_009848.1 3679375 3680031 R hypothetical protein complement(3679375..3680031) Bacillus pumilus SAFR-032 5623009 YP_001488916.1 CDS katX1 NC_009848.1 3680119 3681726 D YxlI; catalase KatX1 3680119..3681726 Bacillus pumilus SAFR-032 5623010 YP_001488917.1 CDS BPUM_3713 NC_009848.1 3681775 3682398 R trp repressor binding protein complement(3681775..3682398) Bacillus pumilus SAFR-032 5623011 YP_001488918.1 CDS BPUM_3714 NC_009848.1 3682462 3683070 R phospholipase/carboxylesterase family protein complement(3682462..3683070) Bacillus pumilus SAFR-032 5623012 YP_001488919.1 CDS BPUM_3715 NC_009848.1 3683067 3684059 R glyoxalase/bleomycin resistance protein; lactoylglutathione lyase complement(3683067..3684059) Bacillus pumilus SAFR-032 5623013 YP_001488920.1 CDS BPUM_3716 NC_009848.1 3684229 3685746 R glycine betaine/L-proline ABC transporter binding protein complement(3684229..3685746) Bacillus pumilus SAFR-032 5623014 YP_001488921.1 CDS BPUM_3717 NC_009848.1 3685739 3686704 R glycine betaine/L-proline ABC transporter ATP-binding protein complement(3685739..3686704) Bacillus pumilus SAFR-032 5623015 YP_001488922.1 CDS rpsR NC_009848.1 3686906 3687145 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(3686906..3687145) Bacillus pumilus SAFR-032 5623016 YP_001488923.1 CDS ssb NC_009848.1 3687189 3687734 R single-strand DNA-binding protein complement(3687189..3687734) Bacillus pumilus SAFR-032 5623017 YP_001488924.1 CDS rpsF NC_009848.1 3687771 3688058 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(3687771..3688058) Bacillus pumilus SAFR-032 5623018 YP_001488925.1 CDS yyaF NC_009848.1 3688167 3689267 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(3688167..3689267) Bacillus pumilus SAFR-032 5623019 YP_001488926.1 CDS BPUM_3722 NC_009848.1 3689484 3689690 R hypothetical protein complement(3689484..3689690) Bacillus pumilus SAFR-032 5623020 YP_001488927.1 CDS BPUM_3723 NC_009848.1 3689952 3691295 D hypothetical protein 3689952..3691295 Bacillus pumilus SAFR-032 5623021 YP_001488928.1 CDS BPUM_3724 NC_009848.1 3691311 3691721 D hypothetical protein 3691311..3691721 Bacillus pumilus SAFR-032 5623022 YP_001488929.1 CDS yyaD NC_009848.1 3691747 3692805 R hypothetical protein complement(3691747..3692805) Bacillus pumilus SAFR-032 5623023 YP_001488930.1 CDS yyaC NC_009848.1 3692827 3693501 D hypothetical protein 3692827..3693501 Bacillus pumilus SAFR-032 5623024 YP_001488931.1 CDS spo0J NC_009848.1 3693527 3694387 R stage 0 DNA-binding protein complement(3693527..3694387) Bacillus pumilus SAFR-032 5623025 YP_001488932.1 CDS soj NC_009848.1 3694374 3695174 R chromosome partitioning protein transcriptional regulator complement(3694374..3695174) Bacillus pumilus SAFR-032 5623026 YP_001488933.1 CDS BPUM_3729 NC_009848.1 3695369 3696193 R hypothetical protein complement(3695369..3696193) Bacillus pumilus SAFR-032 5623027 YP_001488934.1 CDS spoOJ NC_009848.1 3696312 3697187 R stage 0 sporulation protein J; stage 0 DNA-binding protein complement(3696312..3697187) Bacillus pumilus SAFR-032 5623028 YP_001488935.1 CDS gidB NC_009848.1 3697293 3698012 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(3697293..3698012) Bacillus pumilus SAFR-032 5623029 YP_001488936.1 CDS gidA2 NC_009848.1 3698026 3699912 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(3698026..3699912) Bacillus pumilus SAFR-032 5623030 YP_001488937.1 CDS trmE NC_009848.1 3699930 3701309 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(3699930..3701309) Bacillus pumilus SAFR-032 5623031 YP_001488938.1 CDS jag NC_009848.1 3701713 3702336 R SpoIIIJ-associated protein complement(3701713..3702336) Bacillus pumilus SAFR-032 5623032 YP_001488939.1 CDS spoIIIJ NC_009848.1 3702333 3703124 R involved in biogenesis of membrane proteins; Firmicutes specific proteins are shorter than other bacterial counterparts and have a signal peptide and lipid attachment site; necessary for sporulation; OxaA-like protein precursor complement(3702333..3703124) Bacillus pumilus SAFR-032 5623033 YP_001488940.1 CDS rnpA NC_009848.1 3703273 3703632 R protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P complement(3703273..3703632) Bacillus pumilus SAFR-032 5623034 YP_001488941.1 CDS rpmH NC_009848.1 3703711 3703845 R 50S ribosomal protein L34 complement(3703711..3703845) Bacillus pumilus SAFR-032 5623035 BPUM_t0001 tRNA BPUM_t0001 NC_009848.1 49313 49386 D tRNA-Met 49313..49386 Bacillus pumilus SAFR-032 5619261 BPUM_t0002 tRNA BPUM_t0002 NC_009848.1 49413 49484 D tRNA-Glu 49413..49484 Bacillus pumilus SAFR-032 5619262 BPUM_t0003 tRNA BPUM_t0003 NC_009848.1 143187 143261 D tRNA-Asn 143187..143261 Bacillus pumilus SAFR-032 5619370 BPUM_t0004 tRNA BPUM_t0004 NC_009848.1 156050 156124 D tRNA-Glu 156050..156124 Bacillus pumilus SAFR-032 5619381 BPUM_t0005 tRNA BPUM_t0005 NC_009848.1 156132 156207 D tRNA-Val 156132..156207 Bacillus pumilus SAFR-032 5619382 BPUM_t0006 tRNA BPUM_t0006 NC_009848.1 156211 156283 D tRNA-Thr 156211..156283 Bacillus pumilus SAFR-032 5619383 BPUM_t0007 tRNA BPUM_t0007 NC_009848.1 156311 156395 D tRNA-Tyr 156311..156395 Bacillus pumilus SAFR-032 5619384 BPUM_t0008 tRNA BPUM_t0008 NC_009848.1 156400 156471 D tRNA-Gln 156400..156471 Bacillus pumilus SAFR-032 5619385 BPUM_t0009 tRNA BPUM_t0009 NC_009848.1 497357 497431 D tRNA-Asn 497357..497431 Bacillus pumilus SAFR-032 5619683 BPUM_t0010 tRNA BPUM_t0010 NC_009848.1 497436 497526 D tRNA-Ser 497436..497526 Bacillus pumilus SAFR-032 5619684 BPUM_t0011 tRNA BPUM_t0011 NC_009848.1 497536 497607 D tRNA-Glu 497536..497607 Bacillus pumilus SAFR-032 5619685 BPUM_t0012 tRNA BPUM_t0012 NC_009848.1 497630 497704 D tRNA-Gln 497630..497704 Bacillus pumilus SAFR-032 5619686 BPUM_t0013 tRNA BPUM_t0013 NC_009848.1 497735 497810 D tRNA-Lys 497735..497810 Bacillus pumilus SAFR-032 5619687 BPUM_t0014 tRNA BPUM_t0014 NC_009848.1 497818 497900 D tRNA-Leu 497818..497900 Bacillus pumilus SAFR-032 5619688 BPUM_t0015 tRNA BPUM_t0015 NC_009848.1 497949 498032 D tRNA-Leu 497949..498032 Bacillus pumilus SAFR-032 5619689 BPUM_t0016 tRNA BPUM_t0016 NC_009848.1 531669 531745 D tRNA-Arg 531669..531745 Bacillus pumilus SAFR-032 5619737 BPUM_t0017 tRNA BPUM_t0017 NC_009848.1 531757 531830 D tRNA-Gly 531757..531830 Bacillus pumilus SAFR-032 5619738 BPUM_t0018 tRNA BPUM_t0018 NC_009848.1 533656 533732 D tRNA-Ile 533656..533732 Bacillus pumilus SAFR-032 5619740 BPUM_t0019 tRNA BPUM_t0019 NC_009848.1 533747 533822 D tRNA-Ala 533747..533822 Bacillus pumilus SAFR-032 5619741 BPUM_t0020 tRNA BPUM_t0020 NC_009848.1 546998 547090 D tRNA-Ser 546998..547090 Bacillus pumilus SAFR-032 5619752 BPUM_t0021 tRNA BPUM_t0021 NC_009848.1 560096 560172 D tRNA-Met 560096..560172 Bacillus pumilus SAFR-032 5619767 BPUM_t0022 tRNA BPUM_t0022 NC_009848.1 560177 560253 D tRNA-Asp 560177..560253 Bacillus pumilus SAFR-032 5619768 BPUM_t0023 tRNA BPUM_t0023 NC_009848.1 910276 910350 D tRNA-Asn 910276..910350 Bacillus pumilus SAFR-032 5620079 BPUM_t0024 tRNA BPUM_t0024 NC_009848.1 910355 910445 D tRNA-Ser 910355..910445 Bacillus pumilus SAFR-032 5620080 BPUM_t0025 tRNA BPUM_t0025 NC_009848.1 910463 910537 D tRNA-Glu 910463..910537 Bacillus pumilus SAFR-032 5620081 BPUM_t0026 tRNA BPUM_t0026 NC_009848.1 910570 910645 D tRNA-Val 910570..910645 Bacillus pumilus SAFR-032 5620082 BPUM_t0027 tRNA BPUM_t0027 NC_009848.1 910661 910737 D tRNA-Met 910661..910737 Bacillus pumilus SAFR-032 5620083 BPUM_t0028 tRNA BPUM_t0028 NC_009848.1 910760 910836 D tRNA-Asp 910760..910836 Bacillus pumilus SAFR-032 5620084 BPUM_t0029 tRNA BPUM_t0029 NC_009848.1 910855 910930 D tRNA-Phe 910855..910930 Bacillus pumilus SAFR-032 5620085 BPUM_t0030 tRNA BPUM_t0030 NC_009848.1 910937 911009 D tRNA-Thr 910937..911009 Bacillus pumilus SAFR-032 5620086 BPUM_t0031 tRNA BPUM_t0031 NC_009848.1 911025 911109 D tRNA-Tyr 911025..911109 Bacillus pumilus SAFR-032 5620087 BPUM_t0032 tRNA BPUM_t0032 NC_009848.1 911119 911192 D tRNA-Trp 911119..911192 Bacillus pumilus SAFR-032 5620088 BPUM_t0033 tRNA BPUM_t0033 NC_009848.1 911223 911298 D tRNA-His 911223..911298 Bacillus pumilus SAFR-032 5620089 BPUM_t0034 tRNA BPUM_t0034 NC_009848.1 911308 911379 D tRNA-Gln 911308..911379 Bacillus pumilus SAFR-032 5620090 BPUM_t0035 tRNA BPUM_t0035 NC_009848.1 911387 911461 D tRNA-Gly 911387..911461 Bacillus pumilus SAFR-032 5620091 BPUM_t0036 tRNA BPUM_t0036 NC_009848.1 911467 911537 D tRNA-Cys 911467..911537 Bacillus pumilus SAFR-032 5620092 BPUM_t0037 tRNA BPUM_t0037 NC_009848.1 911551 911639 D tRNA-Leu 911551..911639 Bacillus pumilus SAFR-032 5620093 BPUM_t0038 tRNA BPUM_t0038 NC_009848.1 911676 911757 D tRNA-Leu 911676..911757 Bacillus pumilus SAFR-032 5620094 BPUM_t0039 tRNA BPUM_t0039 NC_009848.1 926856 926929 R tRNA-Gly complement(926856..926929) Bacillus pumilus SAFR-032 5620112 BPUM_t0040 tRNA BPUM_t0040 NC_009848.1 1199742 1199814 D tRNA-Val 1199742..1199814 Bacillus pumilus SAFR-032 5620387 BPUM_t0041 tRNA BPUM_t0041 NC_009848.1 2227593 2227666 D tRNA-Gln 2227593..2227666 Bacillus pumilus SAFR-032 5621476 BPUM_t0042 tRNA BPUM_t0042 NC_009848.1 2499387 2499460 R tRNA-Arg complement(2499387..2499460) Bacillus pumilus SAFR-032 5621758 BPUM_t0043 tRNA BPUM_t0043 NC_009848.1 2730967 2731038 R tRNA-Glu complement(2730967..2731038) Bacillus pumilus SAFR-032 5621994 BPUM_t0044 tRNA BPUM_t0044 NC_009848.1 2731046 2731136 R tRNA-Ser complement(2731046..2731136) Bacillus pumilus SAFR-032 5621995 BPUM_t0045 tRNA BPUM_t0045 NC_009848.1 2731140 2731214 R tRNA-Asn complement(2731140..2731214) Bacillus pumilus SAFR-032 5621996 BPUM_t0046 tRNA BPUM_t0046 NC_009848.1 2731221 2731297 R tRNA-Ile complement(2731221..2731297) Bacillus pumilus SAFR-032 5621997 BPUM_t0047 tRNA BPUM_t0047 NC_009848.1 2731315 2731388 R tRNA-Gly complement(2731315..2731388) Bacillus pumilus SAFR-032 5621998 BPUM_t0048 tRNA BPUM_t0048 NC_009848.1 2731398 2731473 R tRNA-His complement(2731398..2731473) Bacillus pumilus SAFR-032 5621999 BPUM_t0049 tRNA BPUM_t0049 NC_009848.1 2731501 2731573 R tRNA-Phe complement(2731501..2731573) Bacillus pumilus SAFR-032 5622000 BPUM_t0050 tRNA BPUM_t0050 NC_009848.1 2731592 2731668 R tRNA-Asp complement(2731592..2731668) Bacillus pumilus SAFR-032 5622001 BPUM_t0051 tRNA BPUM_t0051 NC_009848.1 2731691 2731768 R tRNA-Met complement(2731691..2731768) Bacillus pumilus SAFR-032 5622002 BPUM_t0052 tRNA BPUM_t0052 NC_009848.1 2731798 2731890 R tRNA-Ser complement(2731798..2731890) Bacillus pumilus SAFR-032 5622003 BPUM_t0053 tRNA BPUM_t0053 NC_009848.1 2731898 2731974 R tRNA-Met complement(2731898..2731974) Bacillus pumilus SAFR-032 5622004 BPUM_t0054 tRNA BPUM_t0054 NC_009848.1 2731979 2732052 R tRNA-Met complement(2731979..2732052) Bacillus pumilus SAFR-032 5622005 BPUM_t0055 tRNA BPUM_t0055 NC_009848.1 2732077 2732149 R tRNA-Ala complement(2732077..2732149) Bacillus pumilus SAFR-032 5622006 BPUM_t0056 tRNA BPUM_t0056 NC_009848.1 2732158 2732234 R tRNA-Pro complement(2732158..2732234) Bacillus pumilus SAFR-032 5622007 BPUM_t0057 tRNA BPUM_t0057 NC_009848.1 2732242 2732318 R tRNA-Arg complement(2732242..2732318) Bacillus pumilus SAFR-032 5622008 BPUM_t0058 tRNA BPUM_t0058 NC_009848.1 2732329 2732414 R tRNA-Leu complement(2732329..2732414) Bacillus pumilus SAFR-032 5622009 BPUM_t0059 tRNA BPUM_t0059 NC_009848.1 2732427 2732498 R tRNA-Gly complement(2732427..2732498) Bacillus pumilus SAFR-032 5622010 BPUM_t0060 tRNA BPUM_t0060 NC_009848.1 2732529 2732611 R tRNA-Leu complement(2732529..2732611) Bacillus pumilus SAFR-032 5622011 BPUM_t0061 tRNA BPUM_t0061 NC_009848.1 2732620 2732695 R tRNA-Lys complement(2732620..2732695) Bacillus pumilus SAFR-032 5622012 BPUM_t0062 tRNA BPUM_t0062 NC_009848.1 2732733 2732808 R tRNA-Thr complement(2732733..2732808) Bacillus pumilus SAFR-032 5622013 BPUM_t0063 tRNA BPUM_t0063 NC_009848.1 2732842 2732917 R tRNA-Val complement(2732842..2732917) Bacillus pumilus SAFR-032 5622014 BPUM_t0064 tRNA BPUM_t0064 NC_009848.1 2749752 2749824 D tRNA-Ala 2749752..2749824 Bacillus pumilus SAFR-032 5622030 BPUM_t0065 tRNA BPUM_t0065 NC_009848.1 3081404 3081479 R tRNA-Arg complement(3081404..3081479) Bacillus pumilus SAFR-032 5622394 BPUM_t0066 tRNA BPUM_t0066 NC_009848.1 3657378 3657450 R tRNA-Phe complement(3657378..3657450) Bacillus pumilus SAFR-032 5622984 BPUM_t0067 tRNA BPUM_t0067 NC_009848.1 3657478 3657554 R tRNA-Asp complement(3657478..3657554) Bacillus pumilus SAFR-032 5622985 BPUM_t0068 tRNA BPUM_t0068 NC_009848.1 3657636 3657707 R tRNA-Glu complement(3657636..3657707) Bacillus pumilus SAFR-032 5622986 BPUM_t0069 tRNA BPUM_t0069 NC_009848.1 3657714 3657789 R tRNA-Lys complement(3657714..3657789) Bacillus pumilus SAFR-032 5622987 BPUM_r0001 rRNA BPUM_r0001 NC_009848.1 9570 11120 D 16S ribosomal RNA 9570..11120 Bacillus pumilus SAFR-032 5619218 BPUM_r0002 rRNA BPUM_r0002 NC_009848.1 11300 14230 D 23S ribosomal RNA 11300..14230 Bacillus pumilus SAFR-032 5619219 BPUM_r0003 rRNA BPUM_r0003 NC_009848.1 14292 14410 D 5S ribosomal RNA 14292..14410 Bacillus pumilus SAFR-032 5619220 BPUM_r0004 rRNA BPUM_r0004 NC_009848.1 71178 72730 D 16S ribosomal RNA 71178..72730 Bacillus pumilus SAFR-032 5619283 BPUM_r0005 rRNA BPUM_r0005 NC_009848.1 72910 75840 D 23S ribosomal RNA 72910..75840 Bacillus pumilus SAFR-032 5619284 BPUM_r0006 rRNA BPUM_r0006 NC_009848.1 75902 76020 D 5S ribosomal RNA 75902..76020 Bacillus pumilus SAFR-032 5619285 BPUM_r0007 rRNA BPUM_r0007 NC_009848.1 138304 139854 D 16S ribosomal RNA 138304..139854 Bacillus pumilus SAFR-032 5619367 BPUM_r0008 rRNA BPUM_r0008 NC_009848.1 140034 142967 D 23S ribosomal RNA 140034..142967 Bacillus pumilus SAFR-032 5619368 BPUM_r0009 rRNA BPUM_r0009 NC_009848.1 143029 143147 D 5S ribosomal RNA 143029..143147 Bacillus pumilus SAFR-032 5619369 BPUM_r0010 rRNA BPUM_r0010 NC_009848.1 532013 533563 D 16S ribosomal RNA 532013..533563 Bacillus pumilus SAFR-032 5619739 BPUM_r0011 rRNA BPUM_r0011 NC_009848.1 533921 536851 D 23S ribosomal RNA 533921..536851 Bacillus pumilus SAFR-032 5619742 BPUM_r0012 rRNA BPUM_r0012 NC_009848.1 536913 537031 D 5S ribosomal RNA 536913..537031 Bacillus pumilus SAFR-032 5619743 BPUM_r0013 rRNA BPUM_r0013 NC_009848.1 555236 556786 D 16S ribosomal RNA 555236..556786 Bacillus pumilus SAFR-032 5619764 BPUM_r0014 rRNA BPUM_r0014 NC_009848.1 556966 559896 D 23S ribosomal RNA 556966..559896 Bacillus pumilus SAFR-032 5619765 BPUM_r0015 rRNA BPUM_r0015 NC_009848.1 559958 560076 D 5S ribosomal RNA 559958..560076 Bacillus pumilus SAFR-032 5619766 BPUM_r0016 rRNA BPUM_r0016 NC_009848.1 905382 906932 D 16S ribosomal RNA 905382..906932 Bacillus pumilus SAFR-032 5620076 BPUM_r0017 rRNA BPUM_r0017 NC_009848.1 907112 910041 D 23S ribosomal RNA 907112..910041 Bacillus pumilus SAFR-032 5620077 BPUM_r0018 rRNA BPUM_r0018 NC_009848.1 910153 910266 D 5S ribosomal RNA 910153..910266 Bacillus pumilus SAFR-032 5620078 BPUM_r0019 rRNA BPUM_r0019 NC_009848.1 2733406 2733524 R 5S ribosomal RNA complement(2733406..2733524) Bacillus pumilus SAFR-032 5622015 BPUM_r0020 rRNA BPUM_r0020 NC_009848.1 2733586 2736516 R 23S ribosomal RNA complement(2733586..2736516) Bacillus pumilus SAFR-032 5622016 BPUM_r0021 rRNA BPUM_r0021 NC_009848.1 2736696 2738247 R 16S ribosomal RNA complement(2736696..2738247) Bacillus pumilus SAFR-032 5622017